Citrus Sinensis ID: 014354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDREARIRAAMMDEDEVQEEDIDEDDDFERLSEEEDVIDEDEDEVTLHEKDIGGMVQPRETMN
Secondary Structure (PSIPRED)
ccccccHHcccccccccccccccccHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEccccHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccHHcccccccHHHHHHHHHcccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHccccccHHcccccccHcccccHcccccccHHcccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEEccHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHccccEccccccc
Coil and Loop (DISEMBL)
mdidsglkilnskpteesghtqmeseessalkandKEKEEITESMDKLHieesssglagsssinfkrkpVIIIVVGMAGSGKTTFMHRLVCHtqsrnirgyvmnldpavmtlpfaanidirdTIRYKEVMKQfnlgpnggiltslnlfttKFDEVISLIERRADHLdyvlvdtpgqieifTWSASGAIITEAFASTFPTVVTYVvdtprsanpmtfmSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAissdhsytstLTNSLSLALDEFYKNLKSvgvssvsgaGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDmekskgdtVVLNTGLKDREARIRAAMmdedevqeedidedddferlseeedvidededevtlhekdiggmvqpretmn
Flexible Loop (DISEMBL)
mdidsglkilnskpteesghtqmeseessalkandKEKEEITESMDKLHIEesssglagsssinfkrKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAekqrleeerqkeninklrkdmekskgdtvvlntglkdreARIRAammdedevqeedidedddferlseeedvidededevtlhekdiggmvqpretmn
Low Complexity Region (SEG)
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEEsssglagsssINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYtstltnslslALDEFYKNLKsvgvssvsgagIEAYFKAVEESAQEFMETYKADLDkrraekqrleeerqkeNINKLRKDMEKSKGDTVVLNTGLKDREARIRAAMMdedevqeedidedddfeRLSeeedvidededevTLHEKDIGGMVQPRETMN
Disordered region (IsUnstruct)
***************************************************************NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE*********************************************************************************************************************
Disordered Region (DISOPRED)
**********************************************************************IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRR*********************************************************IDEDDDF***********************************
Disordered Region (DISEMBL)
MDIDSGLKILNSK******************************SMDKLHI*********SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDREARIRAAMMDE***************RLSEEEDVIDEDEDEVTLHEKDIGGMVQPRETMN
Disordered Region (DISPRO)
****************************************************************FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEER*****NKLRKDMEK***************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTVVLNTGLKDREARIRAAMMDEDEVQEEDIDEDDDFERxxxxxxxxxxxxxxxxxxxxxIGGMVQPRETMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q54C25	396	GPN-loop GTPase 1 homolog	yes	no	0.680	0.732	0.593	1e-107
Q9HCN4	374	GPN-loop GTPase 1 OS=Homo	yes	no	0.664	0.756	0.586	2e-98
A4FUD1	373	GPN-loop GTPase 1 OS=Bos	yes	no	0.683	0.780	0.560	3e-97
O42906	367	GTPase npa3 OS=Schizosacc	yes	no	0.762	0.885	0.517	4e-97
Q8VCE2	372	GPN-loop GTPase 1 OS=Mus	yes	no	0.664	0.760	0.579	5e-97
P47122	385	GTPase NPA3 OS=Saccharomy	yes	no	0.737	0.815	0.498	2e-96
P46577	355	GPN-loop GTPase 1 homolog	yes	no	0.631	0.757	0.549	1e-85
Q6CQA6	271	GPN-loop GTPase 3 homolog	no	no	0.406	0.638	0.329	2e-20
Q5A0W6	273	GPN-loop GTPase 3 homolog	N/A	no	0.427	0.666	0.303	5e-20
Q6FSS0	271	GPN-loop GTPase 3 homolog	no	no	0.431	0.678	0.310	1e-19

>sp|Q54C25|GPN1_DICDI GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 172/290 (59%), Positives = 229/290 (78%)

Query: 68  KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK 127
           +P+ IIV+GMAGSGKTT + R+  H     I GY++NLDPAV  LP+  NIDIRDT+ YK
Sbjct: 33  QPINIIVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNYK 92

Query: 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187
           EVMKQFNLGPNGGI+TSLNLF+TKFD+V+ ++E+R+  LDY+++DTPGQIE+FTWSASG 
Sbjct: 93  EVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSASGT 152

Query: 188 IITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247
           IITE  AS+FPTV+ YVVDTPR+ +P TFMSNMLYACSI+YK++LP+V+AFNK D+  H 
Sbjct: 153 IITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITNHR 212

Query: 248 FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307
           FA EWM DF+ FQ A+++D +Y   LT SLSL L+EFY  L+SVGVS+V G+GI+ +F+ 
Sbjct: 213 FAEEWMSDFDSFQDALTNDPTYMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFFEK 272

Query: 308 VEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTV 357
           +  +AQ++ + YKADL+K + +K   E+    +N  KL++D+E+SKG  V
Sbjct: 273 IGLAAQDYHKYYKADLEKIKKQKSDKEQAEANKNWEKLKRDLEESKGAKV 322

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HCN4|GPN1_HUMAN GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 166/283 (58%), Positives = 216/283 (76%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G++  F 
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query: 307 AVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDM 349
            V  +A+E+   Y+ + ++ +      E ++Q+E + +LRKDM
Sbjct: 257 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDM 299

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Homo sapiens (taxid: 9606)

>sp|A4FUD1|GPN1_BOVIN GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1

 Score =  355 bits (912), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 166/296 (56%), Positives = 220/296 (74%), Gaps = 5/296 (1%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           R P  ++V+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  RPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G++  F 
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query: 307 AVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG 362
            V  + +E+   Y+ + ++ +      + ++QKE + +L+KDM      +V L+TG
Sbjct: 257 QVASATEEYEREYRPEYERLKKSLASAQSQQQKEQLERLQKDM-----GSVALDTG 307

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Bos taurus (taxid: 9913)

>sp|O42906|NPA3_SCHPO GTPase npa3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=npa3 PE=1 SV=1

 Score =  355 bits (910), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/348 (51%), Positives = 241/348 (69%), Gaps = 23/348 (6%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           +KP  IIVVGMAGSGKTTFM +L  H  S+N   Y++NLDPAV  LP+ ANIDIRDTI Y
Sbjct: 6   KKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINY 65

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+NLGPNGGI+TSLNLF TKFD+V+ ++E+RA  +D++L+DTPGQIEIF WSASG
Sbjct: 66  KEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASG 125

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
           +II +  AS++PT + YVVDTPR+ +  T+MS+MLYACS+LYK +LPL++ +NK DV   
Sbjct: 126 SIICDTLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQDS 185

Query: 247 EFALEWMQDFEVFQAAISSDH---------SYTSTLTNSLSLALDEFYKNLKSVGVSSVS 297
           EFA +WM DFE FQ A++ D           Y  +L NS+SL L+EFY++L  V  SSV+
Sbjct: 186 EFAKKWMTDFEEFQQAVTKDEGMSSEGATSGYMGSLVNSMSLMLEEFYRHLDFVSCSSVT 245

Query: 298 GAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKE-NINKLRKDMEKSKGDT 356
           G G++ + +AV+   +E+ E Y  +++ R  E QR  +ERQKE  ++KL KDM  SK   
Sbjct: 246 GEGMDDFLEAVKAKVKEYEEEYVPEME-RMKEIQRQTKERQKEAQLSKLMKDMHVSKDKE 304

Query: 357 VVLNTGLKDREARIRAAMMDEDEVQEEDIDEDDDFERLSEE-EDVIDE 403
              + GL   +A        EDE   E +D D+D    +E+ ED+I +
Sbjct: 305 ---DVGLTVSDA--------EDEYNGELVDPDEDDGLTAEDREDMIKQ 341

GTPase that may have a role in mitotic exit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q8VCE2|GPN1_MOUSE GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=1

 Score =  355 bits (910), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 164/283 (57%), Positives = 213/283 (75%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           + PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  QPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G +    
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVVGTGFDELCT 256

Query: 307 AVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDM 349
            V  +A+E+   Y+ + ++ +      +  +QKE + +LRKDM
Sbjct: 257 QVTSAAEEYEREYRPEYERLKKSLANAQSNQQKEQLERLRKDM 299

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Mus musculus (taxid: 10090)

>sp|P47122|NPA3_YEAST GTPase NPA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPA3 PE=1 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/347 (49%), Positives = 237/347 (68%), Gaps = 33/347 (9%)

Query: 72  IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK 131
           II +GMAGSGKTTFM RL  H ++     YV+NLDPAV+ +P+ ANIDIRD+I+YK+VM+
Sbjct: 6   IICIGMAGSGKTTFMQRLNSHLRAEKTPPYVINLDPAVLRVPYGANIDIRDSIKYKKVME 65

Query: 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE 191
            + LGPNG I+TSLNLF+TK D+VI L+E++ D     ++DTPGQIE F WSASGAIITE
Sbjct: 66  NYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAIITE 125

Query: 192 AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE 251
           +FAS+FPTV+ Y+VDTPR+++P TFMSNMLYACSILYKT+LP+++ FNKTDV + +FA E
Sbjct: 126 SFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVCKADFAKE 185

Query: 252 WMQDFEVFQAAISSDH----------SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301
           WM DFE FQAAI  D            Y S+L NS+SL L+EFY  L  VGVSS +G G 
Sbjct: 186 WMTDFESFQAAIKEDQDLNGDNGLGSGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGF 245

Query: 302 EAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT 361
           + + + V++   E+ + YK + +K    K++ EE R+++++N L KD+            
Sbjct: 246 DEFMQCVDKKVDEYDQYYKQEREKALNLKKKKEEMRKQKSLNGLMKDL------------ 293

Query: 362 GLKDREARIRAAMMDEDEVQE-EDIDEDDDFERLSEEEDVIDEDEDE 407
           GL ++ +   AA  D D +    D++ED +       + ++D DEDE
Sbjct: 294 GLNEKSS---AAASDNDSIDAISDLEEDAN-------DGLVDRDEDE 330

GTPase essential for viability. May have a role in mitotic exit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|P46577|GPN1_CAEEL GPN-loop GTPase 1 homolog OS=Caenorhabditis elegans GN=gop-2 PE=1 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/271 (54%), Positives = 195/271 (71%), Gaps = 2/271 (0%)

Query: 64  NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDT 123
           N  +KP I+ V+GMAGSGKTTF+ RL     +R    YV+NLDPAV  +P+  N+DIRDT
Sbjct: 26  NVNQKPSIL-VLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDT 84

Query: 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183
           ++YKEVMK+F +GPNG I+T LNL  T+FD+VI LI +R+      L+DTPGQIE FTWS
Sbjct: 85  VKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWS 144

Query: 184 ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243
           ASG+IIT++ AS+ PTVV Y+VD+ R+ NP TFMSNMLYACSILY+T+LP ++ FNK D+
Sbjct: 145 ASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKLPFIVVFNKADI 204

Query: 244 AQHEFALEWMQDFEVFQAAI-SSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE 302
            +  FAL+WMQDFE F  A+  +  SY + L+ SLSL LDEFY  LK+V VSS +G G E
Sbjct: 205 VKPTFALKWMQDFERFDEALEDARSSYMNDLSRSLSLVLDEFYCGLKTVCVSSATGEGFE 264

Query: 303 AYFKAVEESAQEFMETYKADLDKRRAEKQRL 333
               A++ES + + + Y    +K  AEK+ L
Sbjct: 265 DVMTAIDESVEAYKKEYVPMYEKVLAEKKLL 295

Caenorhabditis elegans (taxid: 6239)

>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 6/179 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           V ++V+G AG+GK+TF + ++ H QS   R +++NLDPA     +   IDIRD I  ++V
Sbjct: 4   VGVLVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTIDIRDLISLEDV 63

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAI 188
           M++F LGPNG ++          D    L E   D+ D Y++ D PGQIE++T       
Sbjct: 64  MEEFGLGPNGSLIYCFEYLLNNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPT 120

Query: 189 ITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245
           I     +   F    TY+++ P   +   F S  L A S +    LP +   +K D+ +
Sbjct: 121 IVRHLQNQLNFNLCATYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINILSKLDLVK 179

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642 PE=3 SV=2

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 6/188 (3%)

Query: 72  IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK 131
           ++V+G AG GK+TF + ++ + QS   R +++NLDPA     +   ID++D I  ++VM+
Sbjct: 6   VLVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVME 65

Query: 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAIIT 190
           +  LGPNGG++          D    L E   D+ D Y++ D PGQIE++T       I 
Sbjct: 66  EMELGPNGGLVYCFEFLLNNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPTIV 122

Query: 191 EAFAST--FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
               ++  F    TY+++ P   +   F S  L A S +    LP +   +K D+ + E+
Sbjct: 123 RHLQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEY 182

Query: 249 ALEWMQDF 256
           + + ++ F
Sbjct: 183 SKKQLKKF 190

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           V ++V+G AG+GK+TF + ++ H Q+   R +++NLDPA     +   IDIRD I   +V
Sbjct: 4   VGLLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTIDIRDLISLDDV 63

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAI 188
           M++ +LGPNG ++          D    L E   D+ D Y++ D PGQIE++T       
Sbjct: 64  MEELDLGPNGALIYCFEYLMKNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPN 120

Query: 189 ITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
           I         F    TY+++ P   +   F S  L A S +    LP +   +K D+ + 
Sbjct: 121 IVRHLQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKD 180

Query: 247 EFALEWMQDF 256
           E+  + ++ F
Sbjct: 181 EYGKKKLKRF 190

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
255542247	407	xpa-binding protein, putative [Ricinus c	0.863	0.904	0.778	1e-172
296083223	412	unnamed protein product [Vitis vinifera]	0.873	0.902	0.794	1e-171
147818685	414	hypothetical protein VITISV_029075 [Viti	0.873	0.898	0.794	1e-171
359477206	435	PREDICTED: GPN-loop GTPase 1 homolog [Vi	0.873	0.855	0.794	1e-170
224108772	399	predicted protein [Populus trichocarpa]	0.840	0.897	0.748	1e-161
357443887	396	GPN-loop GTPase [Medicago truncatula] gi	0.830	0.893	0.773	1e-161
224101525	407	predicted protein [Populus trichocarpa]	0.842	0.882	0.743	1e-161
356565240	389	PREDICTED: GPN-loop GTPase 1 homolog [Gl	0.793	0.868	0.812	1e-161
388503674	396	unknown [Medicago truncatula]	0.830	0.893	0.770	1e-160
363807634	405	uncharacterized protein LOC100797318 [Gl	0.805	0.846	0.795	1e-160

>gi|255542247|ref|XP_002512187.1| xpa-binding protein, putative [Ricinus communis] gi|223548731|gb|EEF50221.1| xpa-binding protein, putative [Ricinus communis]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/375 (77%), Positives = 334/375 (89%), Gaps = 7/375 (1%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDID+    +N K  +E    Q++S      K    EKEE++ESMDKL+I++S S  AGS
Sbjct: 1   MDIDTEFDKMNIKSADEGLSMQLDS------KGALGEKEELSESMDKLNIKQSPSEQAGS 54

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI FKRKPV+IIVVGMAGSGKTTF+HRL+ HTQ+ NIRGYV+NLDPAVMTLPF ANIDI
Sbjct: 55  SSITFKRKPVVIIVVGMAGSGKTTFLHRLISHTQATNIRGYVLNLDPAVMTLPFGANIDI 114

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RA+ LDYVLVDTPGQIEIF
Sbjct: 115 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSVIEKRANQLDYVLVDTPGQIEIF 174

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+ YVVDTPRS++P TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 175 TWSASGAIITEAFASTFPTVIAYVVDTPRSSSPTTFMSNMLYACSILYKTRLPLVLAFNK 234

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
           TDVAQH+FALEWM+DFE FQAA+SSDHSY+STLT SLSL LDEFYKNLKSVGVS+VSGAG
Sbjct: 235 TDVAQHQFALEWMEDFEAFQAAVSSDHSYSSTLTQSLSLVLDEFYKNLKSVGVSAVSGAG 294

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           +EA+FKAVE SA+E+METYKA+LDKRR EKQRLE+ER++E++ +LRKDMEKSKG+TVVL+
Sbjct: 295 MEAFFKAVEASAEEYMETYKAELDKRREEKQRLEDERRRESMERLRKDMEKSKGETVVLS 354

Query: 361 TGLKDREARIRAAMM 375
           TGLKD+EA  R AMM
Sbjct: 355 TGLKDKEAS-RDAMM 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083223|emb|CBI22859.3| unnamed protein product [Vitis vinifera]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/374 (79%), Positives = 339/374 (90%), Gaps = 2/374 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           +E +FKA+E SA+E+M +YKADLDKRRAEKQRLEEER +EN+++LRKDMEKS G+T+VL+
Sbjct: 299 MEEFFKAIEASAEEYMTSYKADLDKRRAEKQRLEEERMRENMDRLRKDMEKSGGETMVLS 358

Query: 361 TGLKDREARIRAAM 374
           TGLKD+ A  +  M
Sbjct: 359 TGLKDKNAGGKTTM 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818685|emb|CAN71805.1| hypothetical protein VITISV_029075 [Vitis vinifera]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 297/374 (79%), Positives = 339/374 (90%), Gaps = 2/374 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           +E +FKA+E SA+E+M +YKADLDKRRAEKQRLEEER +EN+++LRKDMEKS G+T+VL+
Sbjct: 299 MEEFFKAIEASAEEYMTSYKADLDKRRAEKQRLEEERMRENMDRLRKDMEKSGGETMVLS 358

Query: 361 TGLKDREARIRAAM 374
           TGLKD+ A  +  M
Sbjct: 359 TGLKDKNAGGKTTM 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477206|ref|XP_002279592.2| PREDICTED: GPN-loop GTPase 1 homolog [Vitis vinifera]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/374 (79%), Positives = 339/374 (90%), Gaps = 2/374 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           +E +FKA+E SA+E+M +YKADLDKRRAEKQRLEEER +EN+++LRKDMEKS G+T+VL+
Sbjct: 299 MEEFFKAIEASAEEYMTSYKADLDKRRAEKQRLEEERMRENMDRLRKDMEKSGGETMVLS 358

Query: 361 TGLKDREARIRAAM 374
           TGLKD+ A  +  M
Sbjct: 359 TGLKDKNAGGKTTM 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108772|ref|XP_002314963.1| predicted protein [Populus trichocarpa] gi|222864003|gb|EEF01134.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/366 (74%), Positives = 320/366 (87%), Gaps = 8/366 (2%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS L   + K  +E G + M+ +     K   +EK+E+T+SM+KL++E SSSG AG 
Sbjct: 1   MDIDSKLDKFDVKSGDE-GSSSMQVDS----KGTAEEKDELTDSMNKLNVEASSSGQAGH 55

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           S   F+RKPVIIIVVGMAGSGKTTF+HRLVCHTQ+  IRGYV+NLDPAVMTLP+ ANIDI
Sbjct: 56  S---FRRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLDPAVMTLPYGANIDI 112

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVI +IE RAD LDYVLVDTPGQIEIF
Sbjct: 113 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIENRADQLDYVLVDTPGQIEIF 172

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 173 TWSASGAIITEAFASTFPTVVAYVVDTPRSSSPVTFMSNMLYACSILYKTRLPLVLAFNK 232

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
           TDVAQH+FALEWM+DFE FQAA+ SD SY ST + SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 233 TDVAQHQFALEWMEDFEAFQAAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGAG 292

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           ++A+FKA+E SA+E+METYK+DLDKRRAEKQ++EEE++K N+ KLR+DME+S G +VVL+
Sbjct: 293 MDAFFKAIEASAEEYMETYKSDLDKRRAEKQQMEEEQRKHNMEKLRRDMEQSGGQSVVLS 352

Query: 361 TGLKDR 366
           T LKD+
Sbjct: 353 TDLKDK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443887|ref|XP_003592221.1| GPN-loop GTPase [Medicago truncatula] gi|355481269|gb|AES62472.1| GPN-loop GTPase [Medicago truncatula]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/366 (77%), Positives = 315/366 (86%), Gaps = 12/366 (3%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MD D+  K  N+ P +    T ME E   + + N K+KEE++ESM KL IE SSSG    
Sbjct: 1   MDADNASK--NANPDD----TPMEMEAGDSQEKN-KQKEELSESMKKLDIEGSSSG---- 49

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
            S NFKRKPVIIIVVGMAGSGKTT MHRLV HT   NIRGYVMNLDPAVMTLP+A+NIDI
Sbjct: 50  -SPNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDI 108

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 109 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIF 168

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPR+ NP TFMSNMLYACSILYKTRLPL+LAFNK
Sbjct: 169 TWSASGAIITEAFASTFPTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNK 228

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQHEFALEWM+DFEVFQAA SSD SYTS LT SLSLALDEFY NL+S GVS+V+GAG
Sbjct: 229 VDVAQHEFALEWMKDFEVFQAAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAG 288

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           IE +FKAVE SA+E+METYKADLDKRR EKQ LEE R+KEN++KLR++MEKS G+TVVL+
Sbjct: 289 IEGFFKAVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLS 348

Query: 361 TGLKDR 366
           TGLK++
Sbjct: 349 TGLKNK 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101525|ref|XP_002312316.1| predicted protein [Populus trichocarpa] gi|222852136|gb|EEE89683.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/367 (74%), Positives = 317/367 (86%), Gaps = 8/367 (2%)

Query: 1   MDIDSGLKILNSKPTEE-SGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAG 59
           MDIDS L  L+    +E S  TQ++ +     K   ++K+E+ +SM+ L++E SSSG  G
Sbjct: 1   MDIDSKLNKLDINSGDEASSSTQVQVDS----KGTAEDKDELADSMNNLNVEASSSGQVG 56

Query: 60  SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID 119
            +   FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+  IRGYV+NLDPAVMTLP+ ANID
Sbjct: 57  PT---FKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLDPAVMTLPYGANID 113

Query: 120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179
           IRDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVI +IE+RAD LDYVLVDTPGQIEI
Sbjct: 114 IRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIEKRADQLDYVLVDTPGQIEI 173

Query: 180 FTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239
           FTWSASGAIITEAFASTFPTVV YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVL FN
Sbjct: 174 FTWSASGAIITEAFASTFPTVVAYVVDTPRSSSPVTFMSNMLYACSILYKTRLPLVLVFN 233

Query: 240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299
           KTDVAQH+FA+EWM+DFE FQ A+ SD SY ST + SLSL LDEFYKNL+SVGVS+VSGA
Sbjct: 234 KTDVAQHQFAIEWMEDFEAFQGAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGA 293

Query: 300 GIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVL 359
           G++A+FKA+E SA+E+METYKADLDKRR EKQRLEEE+QK+N+ KLRKDME S G +VVL
Sbjct: 294 GMDAFFKAIEASAEEYMETYKADLDKRRVEKQRLEEEQQKQNMEKLRKDMENSGGQSVVL 353

Query: 360 NTGLKDR 366
           +TGLKD+
Sbjct: 354 STGLKDK 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565240|ref|XP_003550850.1| PREDICTED: GPN-loop GTPase 1 homolog [Glycine max]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/341 (81%), Positives = 310/341 (90%), Gaps = 3/341 (0%)

Query: 28  SSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMH 87
            S LKA DKEKEE+TE+M+KLHIE SSSG   S S +F+RKPVIIIVVGMAGSGKTT MH
Sbjct: 7   CSILKAKDKEKEELTENMNKLHIEGSSSG---SGSSSFRRKPVIIIVVGMAGSGKTTLMH 63

Query: 88  RLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147
           RLVCHT  ++IRGYV+NLDPAVMTLP+AANID+RDT++YKEVMKQFNLGPNGGILTSLNL
Sbjct: 64  RLVCHTHLKDIRGYVVNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGGILTSLNL 123

Query: 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207
           F TKFDEVIS+IE+RAD LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVV YVVDT
Sbjct: 124 FATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDT 183

Query: 208 PRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH 267
           PRS +P TFMSNMLYACSILYKTRLPL+L FNK DVA H+FALEWM+DFE FQ A SSDH
Sbjct: 184 PRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQTAASSDH 243

Query: 268 SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRR 327
           SY+STLT SLSL LDEFY NLKSVGVS+VSG G+EA+F AVE SA+E+METYKADLDKRR
Sbjct: 244 SYSSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYKADLDKRR 303

Query: 328 AEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDREA 368
            EKQRLEE+R+KE+++KLR+DMEKS G+TVVL+TGLKD+EA
Sbjct: 304 EEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEA 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503674|gb|AFK39903.1| unknown [Medicago truncatula]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/366 (77%), Positives = 314/366 (85%), Gaps = 12/366 (3%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MD D+  K  N+ P +    T ME E   + + N K+KEE++ESM KL IE SSSG    
Sbjct: 1   MDADNASK--NANPDD----TPMEMEAGDSQEKN-KQKEELSESMKKLDIEGSSSG---- 49

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
            S NFKRKPVIIIVVGMAGSGKTT MHRLV HT   NIRGYVMNLDPAVMTLP+A+NIDI
Sbjct: 50  -SPNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDI 108

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 109 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIF 168

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPR+ NP TFMSNMLYACSILYKTRLPL+LAFNK
Sbjct: 169 TWSASGAIITEAFASTFPTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNK 228

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQHEFAL WM+DFEVFQAA SSD SYTS LT SLSLALDEFY NL+S GVS+V+GAG
Sbjct: 229 VDVAQHEFALVWMKDFEVFQAAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAG 288

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           IE +FKAVE SA+E+METYKADLDKRR EKQ LEE R+KEN++KLR++MEKS G+TVVL+
Sbjct: 289 IEGFFKAVEASAEEYMETYKADLDKRREEKQLLEENRRKENMDKLRREMEKSGGETVVLS 348

Query: 361 TGLKDR 366
           TGLK++
Sbjct: 349 TGLKNK 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807634|ref|NP_001242414.1| uncharacterized protein LOC100797318 [Glycine max] gi|255635299|gb|ACU18003.1| unknown [Glycine max]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/348 (79%), Positives = 312/348 (89%), Gaps = 5/348 (1%)

Query: 21  TQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGS 80
           TQM+S+  S  +A DKEKEE+TE M+KLHIE SSS   GS S N +RKPVII+VVGMAGS
Sbjct: 17  TQMDSD--SGAQAKDKEKEELTEKMNKLHIEGSSS---GSGSSNIRRKPVIILVVGMAGS 71

Query: 81  GKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140
           GKTT MHRLVCHT  ++IRGYVMNLDPAVMTLP+AANID+RDT++YKEVMKQFNLGPNGG
Sbjct: 72  GKTTLMHRLVCHTHLKDIRGYVMNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGG 131

Query: 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 200
           ILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV
Sbjct: 132 ILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 191

Query: 201 VTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ 260
           V YVVDTPRS +P TFMSNMLYACSILYKTRLPL+L FNK DVA H+FALEWM+DFE FQ
Sbjct: 192 VAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQ 251

Query: 261 AAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320
            A SSD SYTSTLT SLSL LDEFY NLKSVGVS+VSG G+EA+F AVE SA+E+METYK
Sbjct: 252 TAASSDQSYTSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYK 311

Query: 321 ADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDREA 368
           ADLDKRR EKQRLEE+R++E+++KLR+DMEKS G+TVVL+TGLK++EA
Sbjct: 312 ADLDKRREEKQRLEEDRRRESMDKLRRDMEKSGGETVVLSTGLKNKEA 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2119093	379	QQT2 "quatre-quart2" [Arabidop	0.798	0.897	0.658	2.9e-119
DICTYBASE|DDB_G0293220	396	gpn1 "GPN-loop GTPase 1" [Dict	0.685	0.737	0.530	8e-85
ZFIN|ZDB-GENE-040801-154	400	zgc:100927 "zgc:100927" [Danio	0.661	0.705	0.542	2e-81
UNIPROTKB|E2RNQ3	390	LOC475707 "Uncharacterized pro	0.683	0.746	0.527	6.6e-81
UNIPROTKB|B4DQM4	388	GPN1 "cDNA FLJ61157, highly si	0.664	0.729	0.530	6e-80
UNIPROTKB|Q9HCN4	374	GPN1 "GPN-loop GTPase 1" [Homo	0.664	0.756	0.530	6e-80
UNIPROTKB|F1SEE2	384	GPN1 "Uncharacterized protein"	0.680	0.755	0.517	7.6e-80
UNIPROTKB|F1NUD1	383	XAB1 "Uncharacterized protein"	0.659	0.733	0.526	1.2e-79
MGI|MGI:1921504	372	Gpn1 "GPN-loop GTPase 1" [Mus	0.659	0.755	0.526	8.7e-79
UNIPROTKB|A4FUD1	373	GPN1 "GPN-loop GTPase 1" [Bos	0.683	0.780	0.506	1.1e-78

TAIR|locus:2119093 QQT2 "quatre-quart2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 228/346 (65%), Positives = 269/346 (77%)

Query:    23 MESEESSALKANDKEKEEITESMDKLHIEEXXXXXXXXXXINFKRKPVIIIVVGMAGSGK 82
             M+  ESS+ +   +E +++ +S+DKL +             NFK+KP+IIIVVGMAGSGK
Sbjct:     1 MDPMESSSEQDIVEESQKLVDSLDKLRVSAASSSS------NFKKKPIIIIVVGMAGSGK 54

Query:    83 TTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142
             T+F+HRLVCHT      GYV+NLDPAVM+LPF ANIDIRDT++YKEVMKQ+NLGPNGGIL
Sbjct:    55 TSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYKEVMKQYNLGPNGGIL 114

Query:   143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT 202
             TSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT
Sbjct:   115 TSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT 174

Query:   203 YVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAA 262
             YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVLAFNKTDVA H+FALEWM+DFEVFQAA
Sbjct:   175 YVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDVADHKFALEWMEDFEVFQAA 234

Query:   263 ISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKAVEESAQEFMETYKAD 322
             I SD+SY          +L EFY+N++           ++ +FKA+E SA+E+METYKAD
Sbjct:   235 IQSDNSYTATLANSLSLSLYEFYRNIRSVGVSAISGAGMDGFFKAIEASAEEYMETYKAD 294

Query:   323 LDXXXXXXXXXXXXXXXXNINKLRKDMEKSKGDTVVLNTGLKDREA 368
             LD                 + KLRKDME S+G TVVLNTGLKDR+A
Sbjct:   295 LDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNTGLKDRDA 340

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

DICTYBASE|DDB_G0293220 gpn1 "GPN-loop GTPase 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 155/292 (53%), Positives = 208/292 (71%)

Query:    66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
             +++P+ IIV+GMAGSGKTT + R+  H     I GY++NLDPAV  LP+  NIDIRDT+ 
Sbjct:    31 EKQPINIIVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVN 90

Query:   126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185
             YKEVMKQFNLGPNGGI+TSLNLF+TKFD+V+ ++E+R+  LDY+++DTPGQIE+FTWSAS
Sbjct:    91 YKEVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSAS 150

Query:   186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245
             G IITE  AS+FPTV+ YVVDTPR+ +P TFMSNMLYACSI+YK++LP+V+AFNK D+  
Sbjct:   151 GTIITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITN 210

Query:   246 HEFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYF 305
             H FA EWM DF+ FQ A+++D +Y           L+EFY  L+           I+ +F
Sbjct:   211 HRFAEEWMSDFDSFQDALTNDPTYMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFF 270

Query:   306 KAVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDMEKSKGDTV 357
             + +  +AQ++ + YKADL+                N  KL++D+E+SKG  V
Sbjct:   271 EKIGLAAQDYHKYYKADLEKIKKQKSDKEQAEANKNWEKLKRDLEESKGAKV 322

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040801-154 zgc:100927 "zgc:100927" [Danio rerio (taxid:7955)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 153/282 (54%), Positives = 195/282 (69%)

Query:    68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK 127
             KPV +IV+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT+ YK
Sbjct:    43 KPVCLIVLGMAGSGKTTFVQRLTAYLHSKKTPPYVINLDPAVHEVPFPANIDIRDTVNYK 102

Query:   128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187
             EVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE++  + +YVL+DTPGQIE+FTWSASG 
Sbjct:   103 EVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKKQSNHEYVLIDTPGQIEVFTWSASGT 162

Query:   188 IITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247
             IITEA AS+FP VV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H 
Sbjct:   163 IITEALASSFPCVVIYVMDTSRSVNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHS 222

Query:   248 FALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKA 307
             FA+EWMQDFEVFQ A++ + SY           LDEFY NL+           ++  F  
Sbjct:   223 FAVEWMQDFEVFQDALNQETSYISNLTRSMSLVLDEFYTNLRVVGVSAVTGSGLDELFVQ 282

Query:   308 VEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDM 349
             V ++A+E+   Y+ + +                 + +LRKDM
Sbjct:   283 VADAAKEYETEYRPEYERLHRELAEAQSQKQQEQLERLRKDM 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RNQ3 LOC475707 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 156/296 (52%), Positives = 199/296 (67%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  SR    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    33 RPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVHEVPFPANIDIRDTVKY 92

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    93 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 152

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   153 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 212

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   213 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 272

Query:   307 AVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDMEKSKGDTVVLNTG 362
              V  +A+E+   Y+ + +                 + +LRKDM      +V L+TG
Sbjct:   273 QVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQLERLRKDM-----GSVALDTG 323

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|B4DQM4 GPN1 "cDNA FLJ61157, highly similar to XPA-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 150/283 (53%), Positives = 193/283 (68%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    31 RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 90

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    91 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 150

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   151 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 210

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   211 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 270

Query:   307 AVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDM 349
              V  +A+E+   Y+ + +                 + +LRKDM
Sbjct:   271 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDM 313

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9HCN4 GPN1 "GPN-loop GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 150/283 (53%), Positives = 193/283 (68%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    17 RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    77 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query:   307 AVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDM 349
              V  +A+E+   Y+ + +                 + +LRKDM
Sbjct:   257 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDM 299

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1SEE2 GPN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 150/290 (51%), Positives = 195/290 (67%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R P  ++V+GMAGSGKTTF+ RL  H  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    28 RAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKY 87

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    88 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASG 147

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   148 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 207

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++ +F 
Sbjct:   208 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFV 267

Query:   307 AVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDMEKSKGDT 356
              V  +A+E+   Y+ + +                 + +L+KDM     DT
Sbjct:   268 QVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDT 317

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1NUD1 XAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 148/281 (52%), Positives = 192/281 (68%)

Query:    69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             PV ++V+GMAGSGKTTF+  L  H   +    YV+NLDPAV  LPF ANIDIRDT++YKE
Sbjct:    25 PVCVLVLGMAGSGKTTFVQCLAAHLHGQRCPPYVINLDPAVHELPFPANIDIRDTVKYKE 84

Query:   129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
             VMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+R +   YV++DTPGQIE+FTWSASG I
Sbjct:    85 VMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKRQNASKYVIIDTPGQIEVFTWSASGTI 144

Query:   189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
             ITEA AS+FP+VV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H F
Sbjct:   145 ITEALASSFPSVVVYVMDTSRSTNPITFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSF 204

Query:   249 ALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKAV 308
             A+EWMQDFE FQ A++ + SY           LDEFY +LK           ++ +F  +
Sbjct:   205 AVEWMQDFETFQDALNQETSYVSNLTRSMSLVLDEFYSSLKVVGVSAVLGTGLDDFFVQL 264

Query:   309 EESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDM 349
              ++ +E+   Y+ + +                 + +LRKDM
Sbjct:   265 SKAVEEYEREYRPEYERLRKTLEKAQNKQKKDQLERLRKDM 305

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

MGI|MGI:1921504 Gpn1 "GPN-loop GTPase 1" [Mus musculus (taxid:10090)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 148/281 (52%), Positives = 190/281 (67%)

Query:    69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++YKE
Sbjct:    19 PVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDIRDTVKYKE 78

Query:   129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
             VMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG I
Sbjct:    79 VMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASGTI 138

Query:   189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
             ITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H F
Sbjct:   139 ITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSF 198

Query:   249 ALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKAV 308
             A+EWMQDFE FQ A++ + +Y           LDEFY +L+            +     V
Sbjct:   199 AVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVVGTGFDELCTQV 258

Query:   309 EESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDM 349
               +A+E+   Y+ + +                 + +LRKDM
Sbjct:   259 TSAAEEYEREYRPEYERLKKSLANAQSNQQKEQLERLRKDM 299

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|A4FUD1 GPN1 "GPN-loop GTPase 1" [Bos taurus (taxid:9913)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 150/296 (50%), Positives = 197/296 (66%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R P  ++V+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    17 RPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    77 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   137 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query:   307 AVEESAQEFMETYKADLDXXXXXXXXXXXXXXXXNINKLRKDMEKSKGDTVVLNTG 362
              V  + +E+   Y+ + +                 + +L+KDM      +V L+TG
Sbjct:   257 QVASATEEYEREYRPEYERLKKSLASAQSQQQKEQLERLQKDM-----GSVALDTG 307

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46577	GPN1_CAEEL	No assigned EC number	0.5498	0.6314	0.7577	yes	no
Q9HCN4	GPN1_HUMAN	No assigned EC number	0.5865	0.6643	0.7566	yes	no
A4FUD1	GPN1_BOVIN	No assigned EC number	0.5608	0.6830	0.7801	yes	no
Q54C25	GPN1_DICDI	No assigned EC number	0.5931	0.6807	0.7323	yes	no
Q8VCE2	GPN1_MOUSE	No assigned EC number	0.5795	0.6643	0.7607	yes	no
O42906	NPA3_SCHPO	3, ., 6, ., -, ., -	0.5172	0.7629	0.8855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	1e-93
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	1e-51
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-21
COG1763	161	COG1763, MobB, Molybdopterin-guanine dinucleotide	0.001

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score =  281 bits (720), Expect = 1e-93
 Identities = 91/241 (37%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 74  VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF 133
           VVG AGSGKTTF+  L           YV+NLDPA   LP+ A+IDIR+ I   +VM+  
Sbjct: 1   VVGPAGSGKTTFVGALSEILPLLGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDD 60

Query: 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF 193
            LGPNG +  +++      D ++  +E   D   Y L DTPGQIE+FT   S A   EA 
Sbjct: 61  GLGPNGALTVAMDFLRITLDWLLEELEYEDD---YYLFDTPGQIELFTHWESLARGVEAL 117

Query: 194 ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWM 253
            ++      Y+VDT R  +P  F S +LYA SI+ +  LP V+A NK D+   EFAL+W 
Sbjct: 118 EASLRLGAVYLVDTRRLTDPSDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLEFALKWF 177

Query: 254 QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313
            D +  Q  +  D S    L  ++  ALD FY   + +  +  +G  +E     ++E+ Q
Sbjct: 178 TDPDDLQLLLELDPSK---LNEAIREALDLFYLVPRFLPDARETGESMEDLLTLIDEALQ 234

Query: 314 E 314
            
Sbjct: 235 Y 235

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score =  173 bits (442), Expect = 1e-51
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 5/245 (2%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             I+  +G AGSGKTT    L    + +     ++NLDPAV  LP+  + D+RD +  +E
Sbjct: 2   MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTARE 61

Query: 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
           +MK++ LGPNG ++ S++L  TK DE+   IE      DYVLVDTPGQ+E+F +  SG  
Sbjct: 62  IMKKYGLGPNGALIASVDLLLTKADEIKEEIESLDA--DYVLVDTPGQMELFAFRESGRK 119

Query: 189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
           + E  + +  +VV +++D   +  P  F+S +L A S+  +  LP +   NK D+   E 
Sbjct: 120 LVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEE 179

Query: 249 ---ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305
               L+W++D E     +  +      L+  L  AL+E    ++ + VS+ +G G +  +
Sbjct: 180 LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY 239

Query: 306 KAVEE 310
            A++E
Sbjct: 240 AAIQE 244

Length = 253

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 90.4 bits (224), Expect = 6e-21
 Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 14/189 (7%)

Query: 65  FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-----D 119
              K   I+V+G  G GKTT ++RLV           + NLDPA    P+  NI     D
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQ 176
                 Y+ +  ++  G NG ++   +      DE+          L   D  ++    +
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 177 IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVL 236
           I++F   +S   I           V  +V  P++  P       L   S    T  P V 
Sbjct: 121 IDLFDEQSSSEEILN----QLNREVVLLVLAPKAVLPEVANP-ALLETSAKSLT-GPNVN 174

Query: 237 AFNKTDVAQ 245
              K  + +
Sbjct: 175 ELFKELLRK 183

Length = 219

>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           I+ +VG   SGKTT + +LV   ++R  R   +        L        +DT R+++  
Sbjct: 4   ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPG----KDTYRHRKAG 59

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLV 171
               +  +        +  T   ++ +++ R    LD VLV
Sbjct: 60  ADQVVVASDHRTAL--MTRTPDRDLDAVLSRLDPLLDLVLV 98

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	100.0
COG1159	298	Era GTPase [General function prediction only]	100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	100.0
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.97
PRK15494	339	era GTPase Era; Provisional	99.97
PRK00089	292	era GTPase Era; Reviewed	99.97
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.96
PRK13768	253	GTPase; Provisional	99.94
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
KOG1533	290	consensus Predicted GTPase [General function predi	99.9
KOG1534	273	consensus Putative transcription factor FET5 [Tran	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.84
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.83
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.81
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.78
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.78
PRK03003	472	GTP-binding protein Der; Reviewed	99.78
PRK12296	500	obgE GTPase CgtA; Reviewed	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.77
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.77
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.77
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.77
PRK00093	435	GTP-binding protein Der; Reviewed	99.76
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.76
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.76
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.75
PRK12297	424	obgE GTPase CgtA; Reviewed	99.75
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.74
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.74
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.74
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.74
KOG1145	683	consensus Mitochondrial translation initiation fac	99.74
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.74
COG0536	369	Obg Predicted GTPase [General function prediction	99.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.73
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.73
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.73
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.73
PRK03003	472	GTP-binding protein Der; Reviewed	99.73
PRK04213	201	GTP-binding protein; Provisional	99.72
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.72
PRK09866	741	hypothetical protein; Provisional	99.72
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.72
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.72
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.72
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.72
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.72
PRK11058	426	GTPase HflX; Provisional	99.72
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.71
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.71
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.71
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.71
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.71
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.71
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.71
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.71
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.71
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.71
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.7
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.7
PRK05306	787	infB translation initiation factor IF-2; Validated	99.7
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.7
PRK09602	396	translation-associated GTPase; Reviewed	99.7
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.7
CHL00189	742	infB translation initiation factor 2; Provisional	99.7
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.7
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.7
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.7
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.7
COG0523	323	Putative GTPases (G3E family) [General function pr	99.69
PRK04004	586	translation initiation factor IF-2; Validated	99.69
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.69
COG2262	411	HflX GTPases [General function prediction only]	99.69
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.69
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.69
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.69
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.69
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.68
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.68
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.68
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.68
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.68
PLN03118	211	Rab family protein; Provisional	99.68
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.68
PRK00093	435	GTP-binding protein Der; Reviewed	99.68
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.68
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.68
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.68
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.68
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.68
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.68
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.67
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.67
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.67
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.67
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.67
PTZ00369	189	Ras-like protein; Provisional	99.67
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.67
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.67
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.67
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.67
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.67
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.67
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.66
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.66
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.66
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.66
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.66
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.66
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	99.66
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.66
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.66
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.66
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.66
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.66
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.66
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.66
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.66
PLN00223	181	ADP-ribosylation factor; Provisional	99.66
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.66
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.66
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.66
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.65
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.65
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.65
PTZ00133	182	ADP-ribosylation factor; Provisional	99.65
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.65
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.65
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.65
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.65
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.65
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.65
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.65
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.64
PRK12736	394	elongation factor Tu; Reviewed	99.64
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.64
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.64
COG0218	200	Predicted GTPase [General function prediction only	99.64
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.64
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.64
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.64
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.64
CHL00071	409	tufA elongation factor Tu	99.63
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.63
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.63
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.63
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.63
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.63
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.63
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.63
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.63
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.63
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.62
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.62
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.62
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.62
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.62
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.61
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.61
KOG0394	210	consensus Ras-related GTPase [General function pre	99.61
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.61
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.61
PRK12317	425	elongation factor 1-alpha; Reviewed	99.61
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.61
PRK12735	396	elongation factor Tu; Reviewed	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.6
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.6
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.6
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.6
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.6
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.6
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.6
PLN03110	216	Rab GTPase; Provisional	99.6
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.6
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.59
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.59
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.59
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.59
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.59
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.59
PRK00049	396	elongation factor Tu; Reviewed	99.58
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.58
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.58
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.58
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.58
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.57
PRK05433	600	GTP-binding protein LepA; Provisional	99.57
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.57
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.57
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.56
PLN03108	210	Rab family protein; Provisional	99.56
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.55
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.55
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.55
PRK12739	691	elongation factor G; Reviewed	99.55
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.54
PLN03126	478	Elongation factor Tu; Provisional	99.54
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	99.54
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.54
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.54
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	99.54
PRK00007	693	elongation factor G; Reviewed	99.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.53
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.52
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.52
PTZ00141	446	elongation factor 1- alpha; Provisional	99.51
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.51
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.51
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.51
PRK10218	607	GTP-binding protein; Provisional	99.51
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.51
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.51
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.51
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.5
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.5
PRK11537	318	putative GTP-binding protein YjiA; Provisional	99.5
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.47
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.47
PRK13351	687	elongation factor G; Reviewed	99.47
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.47
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.47
cd03112	158	CobW_like The function of this protein family is u	99.46
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.46
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.46
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.46
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.45
COG1100	219	GTPase SAR1 and related small G proteins [General	99.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.44
PLN00043	447	elongation factor 1-alpha; Provisional	99.44
COG2229	187	Predicted GTPase [General function prediction only	99.4
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.4
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.39
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.38
COG3596	296	Predicted GTPase [General function prediction only	99.37
PRK14845	1049	translation initiation factor IF-2; Provisional	99.36
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.36
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.36
PRK12740	668	elongation factor G; Reviewed	99.36
PTZ00258	390	GTP-binding protein; Provisional	99.36
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.35
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.35
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.3
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.3
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.28
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.28
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.28
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.27
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.27
PRK07560	731	elongation factor EF-2; Reviewed	99.27
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.26
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.24
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.24
PRK10416	318	signal recognition particle-docking protein FtsY;	99.23
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.23
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.22
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.22
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.22
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.22
PRK14974	336	cell division protein FtsY; Provisional	99.21
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.21
PRK09601	364	GTP-binding protein YchF; Reviewed	99.2
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.2
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.19
PTZ00416	836	elongation factor 2; Provisional	99.19
KOG0410	410	consensus Predicted GTP binding protein [General f	99.19
KOG0395	196	consensus Ras-related GTPase [General function pre	99.19
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.18
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.18
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.18
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.16
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.15
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.15
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.13
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.13
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.13
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.13
cd03114	148	ArgK-like The function of this protein family is u	99.13
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.12
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.11
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.1
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.09
KOG0090	238	consensus Signal recognition particle receptor, be	99.09
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.09
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.08
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.08
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.07
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.07
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.07
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.06
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.06
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.06
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.05
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.05
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.05
PTZ00099	176	rab6; Provisional	99.03
KOG1143	591	consensus Predicted translation elongation factor	99.02
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.01
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.01
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.99
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.99
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.98
PLN00023	334	GTP-binding protein; Provisional	98.97
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.95
COG4181	228	Predicted ABC-type transport system involved in ly	98.94
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.94
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.93
PRK10867	433	signal recognition particle protein; Provisional	98.92
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.91
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.91
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.89
COG4559	259	ABC-type hemin transport system, ATPase component	98.89
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.88
TIGR00959	428	ffh signal recognition particle protein. This mode	98.87
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.87
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.86
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.86
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.85
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.85
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.83
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.82
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.82
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.81
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.81
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.79
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.79
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.79
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.79
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.79
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.78
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.78
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.78
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.78
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.78
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.77
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.77
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.77
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.77
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.77
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.77
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.77
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.77
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.77
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.77
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.76
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.76
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.76
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.76
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.76
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.75
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.75
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.75
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.75
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.74
KOG2486	320	consensus Predicted GTPase [General function predi	98.74
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.74
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.74
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.74
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.74
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.74
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.74
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.73
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.73
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.72
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.72
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.72
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.72
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.72
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.71
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.71
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.71
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.71
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.71
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.71
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.7
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.7
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.7
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.7
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.7
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.69
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.69
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.69
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.69
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.69
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.69
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.68
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.68
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.68
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.67
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.67
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.67
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.67
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.67
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.67
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.66
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.66
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.66
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.66
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.66
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.66
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.65
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.65
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.65
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.65
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.65
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.65
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.65
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.64
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.64
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.64
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.64
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.64
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.64
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.64
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK10938	490	putative molybdenum transport ATP-binding protein	98.63
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.63
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.63
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.63
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.63
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.63
COG4988	559	CydD ABC-type transport system involved in cytochr	98.63
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.63
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.62
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.62
PRK10908	222	cell division protein FtsE; Provisional	98.62
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.62
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.62
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.62
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.62
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.61
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.61
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.61
COG0488	530	Uup ATPase components of ABC transporters with dup	98.61
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.61
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.61
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.61
KOG0781	587	consensus Signal recognition particle receptor, al	98.61
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.61
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.6
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.6
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.6
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.6
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.6
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.6
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.6
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.6
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.59
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.59
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.59
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.59
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.59
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.59
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.59
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.59
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.59
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.59
KOG0460	449	consensus Mitochondrial translation elongation fac	98.59
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.59
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.59
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.58
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.58
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.58

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=100.00  E-value=6.3e-55  Score=403.35  Aligned_cols=299  Identities=64%  Similarity=1.049  Sum_probs=284.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+++..|+++|..|||||||+.+|..+....+.+++++|+||+|.+.|+..|||||+.++|+++|++++|+|||||++++
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            55778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      ++|.+.+++.+.++......++++||||||+++.|+|.+.|.++.+.+++.++.+++||||..+..++.+|+++++++|+
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcc-ccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS-DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ++.+.++|+|+|+||+|+.+...+.+|+.+++.|+.++.+ ..+|++.+.+++++.+++||...+.|.||+.+|.|+++|
T Consensus       176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf  255 (366)
T KOG1532|consen  176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF  255 (366)
T ss_pred             HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence            9999999999999999999999999999999999999986 789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccC-ceeeeccccc
Q 014354          305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKG-DTVVLNTGLK  364 (426)
Q Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~-~~~~~~~~~~  364 (426)
                      +.++.+.+.++...|.+.....+..+...++..+++-++++.+++.-+.. ..+...++.+
T Consensus       256 ~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~~~d~~~~~~~~  316 (366)
T KOG1532|consen  256 FTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPLKNDVPLATGDS  316 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccccCCCCCCCCcH
Confidence            99999999999999999999999999999999999999999999977666 3344444433

>COG1159 Era GTPase [General function prediction only]

Probab=100.00  E-value=2e-37  Score=293.31  Aligned_cols=215  Identities=24%  Similarity=0.303  Sum_probs=184.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+|+|+|.||||||||+|+|+|...+.            ++..|+||    |+.+              .||.+.  
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------------vS~k~QTT----R~~I--------------~GI~t~--   51 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RNRI--------------RGIVTT--   51 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEe------------ecCCcchh----hhhe--------------eEEEEc--
Confidence            467899999999999999999999999875            89999999    8777              488875  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                       ++.|++|+||||++++  .+.++..+.+....  ..+|+++||||+.+++...+     ..++
T Consensus        52 -----------------~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-----~~il  107 (298)
T COG1159          52 -----------------DNAQIIFVDTPGIHKP--KHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-----EFIL  107 (298)
T ss_pred             -----------------CCceEEEEeCCCCCCc--chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-----HHHH
Confidence                             5689999999999997  67788888777765  45899999999999888765     3456


Q ss_pred             HHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..++..+.|+|+++||+|.+.+.. +..+.+.+.                         ...+|..+||+||++|.|++.
T Consensus       108 ~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~-------------------------~~~~f~~ivpiSA~~g~n~~~  162 (298)
T COG1159         108 EQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK-------------------------KLLPFKEIVPISALKGDNVDT  162 (298)
T ss_pred             HHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH-------------------------hhCCcceEEEeeccccCCHHH
Confidence            666677789999999999999876 333333222                         234667899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      |.+.+...+|+++|+||.+..++.+++|++.|++||+++..+++|+||+....+-.+..
T Consensus       163 L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~  221 (298)
T COG1159         163 LLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE  221 (298)
T ss_pred             HHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999998887776653

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=100.00  E-value=4.1e-33  Score=264.05  Aligned_cols=235  Identities=38%  Similarity=0.624  Sum_probs=181.9

Q ss_pred             EEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHH
Q 014354           74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD  153 (426)
Q Consensus        74 iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~  153 (426)
                      |+|++||||||+++.+.......++.++++|+||++...||...+|+|+.+.++++|++++++|||+++.+++++...++
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d   80 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID   80 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC
Q 014354          154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP  233 (426)
Q Consensus       154 ~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P  233 (426)
                      |+....... . .+|+|+|||||.+.++++.....+.+.+.....-++|+++|+....++..|.+..+.++..+.+.+.|
T Consensus        81 ~l~~~i~~~-~-~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP  158 (238)
T PF03029_consen   81 WLDEEIEKY-E-DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP  158 (238)
T ss_dssp             HHHHHHHHH-H--SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHhhc-C-CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence            998888765 2 49999999999999999999888888887655679999999998888999999999999989999999


Q ss_pred             eEEEEecCCCCC--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          234 LVLAFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       234 ~IlVlNKiDl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      .|.|+||+|+.+  .....+|..+...+...+...   ...+.++++.++++++...+++++|+.+++|+.+|+..+.+.
T Consensus       159 ~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  159 HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            999999999999  455567777777666655433   678888999998887665599999999999999999998876


Q ss_pred             HH
Q 014354          312 AQ  313 (426)
Q Consensus       312 ~~  313 (426)
                      ..
T Consensus       236 ~~  237 (238)
T PF03029_consen  236 NQ  237 (238)
T ss_dssp             HH
T ss_pred             hc
Confidence            53

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00436 era GTP-binding protein Era

Probab=99.97  E-value=2.1e-31  Score=257.84  Aligned_cols=210  Identities=18%  Similarity=0.217  Sum_probs=159.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|+||||||||+|+|++...+.            ++..|++|    ++.+              .|+..       
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~------------vs~~~~TT----r~~i--------------~~i~~-------   44 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISI------------TSPKAQTT----RNRI--------------SGIHT-------   44 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEee------------cCCCCCcc----cCcE--------------EEEEE-------
Confidence            68999999999999999999987542            67777777    3322              13332       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                  ..+.+++||||||+.+..  ..+...+.+....  ..+|++++|+|+........      .++..+.
T Consensus        45 ------------~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~------~i~~~l~  104 (270)
T TIGR00436        45 ------------TGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGE------FVLTKLQ  104 (270)
T ss_pred             ------------cCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHH------HHHHHHH
Confidence                        234689999999997752  2233333332222  45899999999987544321      2334455


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+..+.........+.                         ..+.+.+++++||++|.|+++|+++|
T Consensus       105 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~v~~iSA~~g~gi~~L~~~l  159 (270)
T TIGR00436       105 NLKRPVVLTRNKLDNKFKDKLLPLIDKYA-------------------------ILEDFKDIVPISALTGDNTSFLAAFI  159 (270)
T ss_pred             hcCCCEEEEEECeeCCCHHHHHHHHHHHH-------------------------hhcCCCceEEEecCCCCCHHHHHHHH
Confidence            67899999999999986553322221111                         12344579999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          309 EESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      .+.+++.+|+||.+..++.+.+|.+.|++||++|+++++|+||+....+..|..
T Consensus       160 ~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~  213 (270)
T TIGR00436       160 EVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF  213 (270)
T ss_pred             HHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999888763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.97  E-value=1.8e-30  Score=258.75  Aligned_cols=214  Identities=19%  Similarity=0.190  Sum_probs=158.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.||||||||+|+|++..++.            ++..+++|    ++.+              .+++.   
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------vs~k~~tT----r~~~--------------~~~~~---   96 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------VTPKVQTT----RSII--------------TGIIT---   96 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee------------ccCCCCCc----cCcE--------------EEEEE---
Confidence            355699999999999999999999886532            45555555    2211              12222   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-H-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                      ..+.+++||||||+.+++  ..+...+.+.. . ...+|++|+|+|+..++....     ..++
T Consensus        97 ----------------~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~-----~~il  153 (339)
T PRK15494         97 ----------------LKDTQVILYDTPGIFEPK--GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDIT-----HNIL  153 (339)
T ss_pred             ----------------eCCeEEEEEECCCcCCCc--ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHH-----HHHH
Confidence                            245689999999997652  22333333322 1 245899999999987765543     1233


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...+.|.|+|+||+|+.... .....+.+.                         ....+..++++||++|.|++++
T Consensus       154 ~~l~~~~~p~IlViNKiDl~~~~-~~~~~~~l~-------------------------~~~~~~~i~~iSAktg~gv~eL  207 (339)
T PRK15494        154 DKLRSLNIVPIFLLNKIDIESKY-LNDIKAFLT-------------------------ENHPDSLLFPISALSGKNIDGL  207 (339)
T ss_pred             HHHHhcCCCEEEEEEhhcCcccc-HHHHHHHHH-------------------------hcCCCcEEEEEeccCccCHHHH
Confidence            44555678999999999986531 111111111                         1223467999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      +++|...+++++|+||.+..|+++.+|++.|++||++|+++++|+||+....+..|..
T Consensus       208 ~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~  265 (339)
T PRK15494        208 LEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWED  265 (339)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999988873

>PRK00089 era GTPase Era; Reviewed

Probab=99.97  E-value=7.1e-30  Score=249.88  Aligned_cols=214  Identities=23%  Similarity=0.298  Sum_probs=161.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|+||||||||+|+|++...+.            ++..|+++    +..+              .++++    
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------vs~~~~tt----~~~i--------------~~i~~----   49 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RHRI--------------RGIVT----   49 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceee------------cCCCCCcc----cccE--------------EEEEE----
Confidence            56789999999999999999999886542            45556555    2221              12332    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+.+++||||||+.++.  ..++..+.....  ...+|++++|+|+...+....     ..++.
T Consensus        50 ---------------~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~-----~~i~~  107 (292)
T PRK00089         50 ---------------EDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD-----EFILE  107 (292)
T ss_pred             ---------------cCCceEEEEECCCCCCch--hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH-----HHHHH
Confidence                           134789999999997752  333333333322  245899999999988554332     23344


Q ss_pred             HHhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .+...+.|+++|+||+|+.. ..........+.                         ..+++.+++++||++|.|+.+|
T Consensus       108 ~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~-------------------------~~~~~~~i~~iSA~~~~gv~~L  162 (292)
T PRK00089        108 KLKKVKTPVILVLNKIDLVKDKEELLPLLEELS-------------------------ELMDFAEIVPISALKGDNVDEL  162 (292)
T ss_pred             HHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHH-------------------------hhCCCCeEEEecCCCCCCHHHH
Confidence            45556789999999999984 343333322221                         1234678999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          305 FKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       305 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      +++|...+++.+|+||.+..++.+.++++.|++||++|.++++|+||+....+..|..
T Consensus       163 ~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~  220 (292)
T PRK00089        163 LDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEE  220 (292)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999888863

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-29  Score=238.16  Aligned_cols=242  Identities=18%  Similarity=0.218  Sum_probs=173.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+...|+|+|+||+|||||.|.++|..++            +++.++.||    |..+              .|++|+ 
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~------------~vS~K~~TT----r~~i--------------lgi~ts-  117 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS------------AVSRKVHTT----RHRI--------------LGIITS-  117 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccc------------cccccccce----eeee--------------eEEEec-
Confidence            456789999999999999999999999977            388888888    5544              588885 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh--chHHH-HHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~--~~~~~-l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                        ++.|++|+||||+......+  .+... +.....+ ..+|++++|+|+...-.+   ++.. 
T Consensus       118 ------------------~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~---l~p~-  175 (379)
T KOG1423|consen  118 ------------------GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTP---LHPR-  175 (379)
T ss_pred             ------------------CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCc---cChH-
Confidence                              67999999999998863211  11121 2222222 458999999999842111   1110 


Q ss_pred             HHHHHH-hhccCCeEEEEecCCCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhh--------HhhhhcCCceE
Q 014354          222 YACSIL-YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLA--------LDEFYKNLKSV  291 (426)
Q Consensus       222 ~~~~~l-~~~~~P~IlVlNKiDl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~vv  291 (426)
                       .++.+ .-.++|.|+|+||+|..+...+ ......+.  +..+..   ...++.++....        ...|..|.++|
T Consensus       176 -vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt--~g~l~~---~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF  249 (379)
T KOG1423|consen  176 -VLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLT--NGELAK---LKLEVQEKFTDVPSDEKWRTICGWSHFERVF  249 (379)
T ss_pred             -HHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhcc--ccccch---hhhhHHHHhccCCcccccccccCcccceeEE
Confidence             11112 2457899999999999987643 22222111  000000   000111111110        11244567899


Q ss_pred             EeecccCCCHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecccccch
Q 014354          292 GVSSVSGAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDR  366 (426)
Q Consensus       292 ~vSA~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~~~~~  366 (426)
                      +|||++|+||.++.++|...++.++|.||.+..+....++++.+++|+++|+++++|+||..+..+.+|.-..++
T Consensus       250 ~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~~g  324 (379)
T KOG1423|consen  250 MVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERPAG  324 (379)
T ss_pred             EEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999866543

>PRK13768 GTPase; Provisional

Probab=99.94  E-value=2.9e-25  Score=212.78  Aligned_cols=242  Identities=33%  Similarity=0.557  Sum_probs=192.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+++++|++|+||||++..+.......+.++.+++.||+....|+...+++++.+...++|...+++||+..+.+..++.
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~   82 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL   82 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence            57899999999999999999998888889999999999999889888888999999999999999999999887776677


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      ....++...+..  .+.+++||||||+.+++.++..+..+.+.+....++++++|+|+.....+.++....+..+....+
T Consensus        83 ~~~~~l~~~l~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~  160 (253)
T PRK13768         83 TKADEIKEEIES--LDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR  160 (253)
T ss_pred             HHHHHHHHHHHh--cCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH
Confidence            778887777764  346999999999999877777777777777654489999999998877776655443333333336


Q ss_pred             ccCCeEEEEecCCCCChHhHHH---HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALE---WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      .++|+|+|+||+|+.+......   +......+...+.....+...+.++++..+..+..+.+++++||++++|+++|++
T Consensus       161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~  240 (253)
T PRK13768        161 LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYA  240 (253)
T ss_pred             cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHH
Confidence            7899999999999998754433   3333333444444433444677778887777776667899999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      +|.+.++
T Consensus       241 ~I~~~l~  247 (253)
T PRK13768        241 AIQEVFC  247 (253)
T ss_pred             HHHHHcC
Confidence            9988764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=5.8e-24  Score=214.99  Aligned_cols=196  Identities=19%  Similarity=0.198  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .-|+|+|+||||||||||+|++...             .++.+|+||    +..              +-|++..     
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~-------------~vs~~p~TT----~~p--------------~~Giv~~-----  203 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKP-------------KVADYPFTT----LVP--------------NLGVVRV-----  203 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcc-------------cccCCCCCc----cCc--------------EEEEEEe-----
Confidence            3799999999999999999998752             378889888    322              2354432     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   .....++|+||||+.+.... ..++..+.+.+  ..++++++|||+...... ........+...+.
T Consensus       204 -------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~radvlL~VVD~s~~~~~-d~~e~~~~l~~eL~  267 (390)
T PRK12298        204 -------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ERCRVLLHLIDIAPIDGS-DPVENARIIINELE  267 (390)
T ss_pred             -------------CCCcEEEEEeCCCccccccchhhHHHHHHHHH--HhCCEEEEEeccCccccc-ChHHHHHHHHHHHH
Confidence                         11235999999999875321 12343344333  457999999998632111 11111111222222


Q ss_pred             h-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC-CceEEeecccCCCHH
Q 014354          229 K-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIE  302 (426)
Q Consensus       229 ~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~vv~vSA~~g~gv~  302 (426)
                      .     .++|.|||+||+|+.....+......+.                         ..+.+ .+++++||+++.|+.
T Consensus       268 ~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-------------------------~~~~~~~~Vi~ISA~tg~GId  322 (390)
T PRK12298        268 KYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-------------------------EALGWEGPVYLISAASGLGVK  322 (390)
T ss_pred             hhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-------------------------HHhCCCCCEEEEECCCCcCHH
Confidence            2     3689999999999986654322222211                         11122 369999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENI  342 (426)
Q Consensus       303 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~  342 (426)
                      +|+++|.+.+++.+++||.+..++.+.+|.+.|++||++.
T Consensus       323 eLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~  362 (390)
T PRK12298        323 ELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE  362 (390)
T ss_pred             HHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999997653

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=99.90  E-value=2.8e-23  Score=189.46  Aligned_cols=238  Identities=24%  Similarity=0.408  Sum_probs=194.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      -.+|||||||||||..+.+..-....++.++++|.||+-...||...++|++.+.++++|++++++|||+..+++.+|..
T Consensus         4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~   83 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA   83 (290)
T ss_pred             ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      +++|+...++.  ....|+++|.|||.+.++++..-..+.+.+.. ...-++|-++|+.-..++..|.+..+..+.-|..
T Consensus        84 ~idwl~~~l~~--~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~  161 (290)
T KOG1533|consen   84 NIDWLLEKLKP--LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH  161 (290)
T ss_pred             hhHHHHHHhhh--ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence            99999888875  34689999999999998877665555555543 4467889999998888899999999988888999


Q ss_pred             ccCCeEEEEecCCCCChHhH----HHH---HHHHHHHHHHhccccc--hhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          230 TRLPLVLAFNKTDVAQHEFA----LEW---MQDFEVFQAAISSDHS--YTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~----~~~---~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      .+.|.|-|+.|+|+.+....    ...   .+++..|...+..++.  .++++...++.+++.| +-+.+.++..-..+.
T Consensus       162 melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~-~LVSF~~L~v~nkeS  240 (290)
T KOG1533|consen  162 MELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDF-NLVSFEVLDVDNKES  240 (290)
T ss_pred             hcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhcc-CceeeEEeeccCHHH
Confidence            99999999999999876431    122   3344455555555543  4788888888888664 556677776666666


Q ss_pred             HHHHHHHHHHH
Q 014354          301 IEAYFKAVEES  311 (426)
Q Consensus       301 v~~l~~~l~~~  311 (426)
                      +-.|...|.++
T Consensus       241 ml~l~~~IDkA  251 (290)
T KOG1533|consen  241 MLRLQQTIDKA  251 (290)
T ss_pred             HHHHHHHHHhc
Confidence            66666666543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=99.90  E-value=3.3e-23  Score=186.11  Aligned_cols=243  Identities=26%  Similarity=0.405  Sum_probs=196.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .-+.++|+.||||||+.+.|..+....|+...++|+||+.....+...+++|+.+.++++|+.+.++||||.+.++.++-
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~   83 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLL   83 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHH
Confidence            34689999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      ..++|+-.-.  ..-+-+|+++|.||+++.++|-..-..+.+.+.. .+.-+++|++|+.--.+...|.+..+.++..+.
T Consensus        84 ~NldwL~~~~--Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi  161 (273)
T KOG1534|consen   84 ENLDWLEEEI--GDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI  161 (273)
T ss_pred             HHHHHHHhhc--cCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence            9999987622  2335699999999999999988888888888766 567899999999888888999999999999999


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHH----HHHHH--hccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQAA--ISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~----~l~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ..++|.|-|+.|+|+.+.....++...+.    .+...  +......+..+++.++..+++ |+.+.++|+-....+.|.
T Consensus       162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d-~~Mv~FlPl~~~~eeSi~  240 (273)
T KOG1534|consen  162 SLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDD-YSMVNFLPLDSSDEESIN  240 (273)
T ss_pred             HhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcc-ccceeeeecCCCCHHHHH
Confidence            99999999999999998743222211111    11110  000112466777777777655 466889999888888888


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      .++..|..+.+.+
T Consensus       241 ~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  241 IILSYIDDAIQYG  253 (273)
T ss_pred             HHHHHHHHHHHhc
Confidence            8877777666544

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=1.1e-22  Score=179.56  Aligned_cols=155  Identities=26%  Similarity=0.335  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+++|.||+|||||+|+|+|....             ++++|++|    .+..              .|.+.       
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~-------------v~n~pG~T----v~~~--------------~g~~~-------   43 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQK-------------VGNWPGTT----VEKK--------------EGIFK-------   43 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEE-------------EEESTTSS----SEEE--------------EEEEE-------
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCce-------------ecCCCCCC----eeee--------------eEEEE-------
Confidence            6899999999999999999999833             66777766    2111              23333       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  ..+.++.|+||||+..............+++....+|++++|+|+++.       ..-++.+..+...
T Consensus        44 ------------~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l-------~r~l~l~~ql~e~  104 (156)
T PF02421_consen   44 ------------LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL-------ERNLYLTLQLLEL  104 (156)
T ss_dssp             ------------ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH-------HHHHHHHHHHHHT
T ss_pred             ------------ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH-------HHHHHHHHHHHHc
Confidence                        134789999999998865444445555566666779999999999652       1224555667788


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ++|+|+|+||+|........-   +...|.                      +.. ++|+|++||++|.|+++|+++|
T Consensus       105 g~P~vvvlN~~D~a~~~g~~i---d~~~Ls----------------------~~L-g~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  105 GIPVVVVLNKMDEAERKGIEI---DAEKLS----------------------ERL-GVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TSSEEEEEETHHHHHHTTEEE----HHHHH----------------------HHH-TS-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCCEEEEEeCHHHHHHcCCEE---CHHHHH----------------------HHh-CCCEEEEEeCCCcCHHHHHhhC
Confidence            999999999999776543211   111111                      111 3689999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.86  E-value=1.3e-20  Score=185.95  Aligned_cols=235  Identities=18%  Similarity=0.177  Sum_probs=156.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-----CC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-----GG  140 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-----g~  140 (426)
                      ..++.+|+|+|+||||||||+++|.......+.++.|+..||... ...+..+  .++++    |+.+...|+     .+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~-~~~gall--gd~~r----~~~~~~~~~~~~r~~~  125 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST-RTGGSIL--GDKTR----MERLSRHPNAFIRPSP  125 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-ccchhhh--chHhH----HHhhcCCCCeEEEecC
Confidence            346789999999999999999999999888889999999999643 2222222  23333    333433333     11


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                      -+|.+.-++....+.+.++.  ..+++++||||+|+...      ...+     ...+|++++|++...+.+-+...   
T Consensus       126 ~~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs------~~~i-----~~~aD~vlvv~~p~~gd~iq~~k---  189 (332)
T PRK09435        126 SSGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQS------ETAV-----AGMVDFFLLLQLPGAGDELQGIK---  189 (332)
T ss_pred             CcccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccc------hhHH-----HHhCCEEEEEecCCchHHHHHHH---
Confidence            13333223445555555554  45799999999999642      1111     23479999998744333222211   


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA  299 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~  299 (426)
                            ....+++.|+|+||+|+............+......+.                 ... ....+++++||++|.
T Consensus       190 ------~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~-----------------~~~~~w~~pVi~vSA~~g~  246 (332)
T PRK09435        190 ------KGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLR-----------------PKDPGWQPPVLTCSALEGE  246 (332)
T ss_pred             ------hhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhccc-----------------ccccCCCCCEEEEECCCCC
Confidence                  11345667999999999976544334333332211100                 000 112589999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhHHHhH---HHHHHHHHHHHHHHHHHHHHhhh
Q 014354          300 GIEAYFKAVEESAQEFMETYKADLDKR---RAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       300 gv~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      |+++|++.|.++.+   +.|+.+..+.   .+.++++.+.+|+++++++.+..
T Consensus       247 GIdeL~~~I~~~~~---~l~~sg~l~~~r~~~~~~~v~elire~l~~~~~~~~  296 (332)
T PRK09435        247 GIDEIWQAIEDHRA---ALTASGEFAARRREQQVDWMWEMVEEGLLDRLFADP  296 (332)
T ss_pred             CHHHHHHHHHHHHH---HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            99999999999887   6677777766   77899999999999999997655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=4.8e-21  Score=191.38  Aligned_cols=160  Identities=26%  Similarity=0.281  Sum_probs=120.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.||+|||||+|+|++...+.            |+.+|+.|    ||++.              +.+.      
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI------------V~D~pGvT----RDr~y--------------~~~~------   47 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAI------------VSDTPGVT----RDRIY--------------GDAE------   47 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeE------------eecCCCCc----cCCcc--------------ceeE------
Confidence            689999999999999999999998664            77778777    77762              1111      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   +.+..+.+|||+|+.... ...+...+.+...  ...+|++|||||+..|+++.+     ..+...+
T Consensus        48 -------------~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D-----~~ia~~L  108 (444)
T COG1160          48 -------------WLGREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPAD-----EEIAKIL  108 (444)
T ss_pred             -------------EcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-----HHHHHHH
Confidence                         344679999999997642 1233343433322  245899999999999999987     4466677


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      +..++|+|+|+||+|-...+.   ...++.                          .+++.+++++||.+|.|+.+|+++
T Consensus       109 r~~~kpviLvvNK~D~~~~e~---~~~efy--------------------------slG~g~~~~ISA~Hg~Gi~dLld~  159 (444)
T COG1160         109 RRSKKPVILVVNKIDNLKAEE---LAYEFY--------------------------SLGFGEPVPISAEHGRGIGDLLDA  159 (444)
T ss_pred             HhcCCCEEEEEEcccCchhhh---hHHHHH--------------------------hcCCCCceEeehhhccCHHHHHHH
Confidence            778899999999999874432   111111                          135678999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      +.+.++
T Consensus       160 v~~~l~  165 (444)
T COG1160         160 VLELLP  165 (444)
T ss_pred             HHhhcC
Confidence            999985

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=7.3e-21  Score=190.04  Aligned_cols=182  Identities=20%  Similarity=0.288  Sum_probs=134.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ..+.+|+|+|.||+|||||+|+|++..+..            ++..++||    |+.+..                 ...
T Consensus       176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I------------v~~~aGTT----RD~I~~-----------------~~e  222 (444)
T COG1160         176 TDPIKIAIIGRPNVGKSSLINAILGEERVI------------VSDIAGTT----RDSIDI-----------------EFE  222 (444)
T ss_pred             CCceEEEEEeCCCCCchHHHHHhccCceEE------------ecCCCCcc----ccceee-----------------eEE
Confidence            357899999999999999999999998764            78888888    665521                 100


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--hHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                      .++..|.||||+|+.....-..  .-..+.+.+ +...++++++|+|+..++..++     ..+
T Consensus       223 ----------------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-----~~i  281 (444)
T COG1160         223 ----------------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-----LRI  281 (444)
T ss_pred             ----------------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-----HHH
Confidence                            3567899999999977521000  001222222 2356899999999999998887     557


Q ss_pred             HHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +.++...+.|+|||+||||+...  .....+...+....                      .|..+++++++||++|.|+
T Consensus       282 a~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------------------~~l~~a~i~~iSA~~~~~i  339 (444)
T COG1160         282 AGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------------------PFLDFAPIVFISALTGQGL  339 (444)
T ss_pred             HHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHh----------------------ccccCCeEEEEEecCCCCh
Confidence            77788999999999999999886  33334444443221                      3457899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHH
Q 014354          302 EAYFKAVEESAQEFMETYKADLD  324 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~~~~~~~~  324 (426)
                      ..+++++...........+....
T Consensus       340 ~~l~~~i~~~~~~~~~ri~Ts~L  362 (444)
T COG1160         340 DKLFEAIKEIYECATRRISTSLL  362 (444)
T ss_pred             HHHHHHHHHHHHHhccccCHHHH
Confidence            99999999988876666655543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.84  E-value=5.1e-21  Score=190.79  Aligned_cols=176  Identities=19%  Similarity=0.210  Sum_probs=123.5

Q ss_pred             CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354           63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL  142 (426)
Q Consensus        63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~  142 (426)
                      +......++++|+|+||+|||||+|.++.....             |.++++||                          
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradve-------------vqpYaFTT--------------------------  202 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-------------VQPYAFTT--------------------------  202 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccc-------------cCCccccc--------------------------
Confidence            344667889999999999999999999988633             66666665                          


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH----hcCCcEEEEEEeCCCCCCchhhhh
Q 014354          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA----STFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~----~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                        ..+|.++++.         +...|+++||||+.+.   ........++.+    +++..+|+|++|.+..|+..--.+
T Consensus       203 --ksL~vGH~dy---------kYlrwQViDTPGILD~---plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Q  268 (620)
T KOG1490|consen  203 --KLLLVGHLDY---------KYLRWQVIDTPGILDR---PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQ  268 (620)
T ss_pred             --chhhhhhhhh---------heeeeeecCCccccCc---chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHH
Confidence              2234555544         3368999999999885   233333333332    255778999999999888754444


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHH-HHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      ..++........++|+|+|+||||+..++.+.+-. +.++.+..                       -++++++.+|+.+
T Consensus       269 vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~-----------------------~~~v~v~~tS~~~  325 (620)
T KOG1490|consen  269 VKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIID-----------------------DGNVKVVQTSCVQ  325 (620)
T ss_pred             HHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHh-----------------------ccCceEEEecccc
Confidence            44555555668899999999999999987543222 11211111                       1457899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 014354          298 GAGIEAYFKAVEESAQE  314 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~  314 (426)
                      .+||.++....++.+..
T Consensus       326 eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  326 EEGVMDVRTTACEALLA  342 (620)
T ss_pred             hhceeeHHHHHHHHHHH
Confidence            99999998777765443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.83  E-value=5.9e-19  Score=165.58  Aligned_cols=232  Identities=19%  Similarity=0.297  Sum_probs=141.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc-----
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL-----  142 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~-----  142 (426)
                      +..+|+|.|+||||||||+++|.......+.+++|+..||.. .+.++..+  .|+++..    .+...++-=|-     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlL--GDRiRM~----~~~~d~~vfIRS~atR  100 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALL--GDRIRMQ----ELSRDPGVFIRSMATR  100 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS----GGGCH----HHHTSTTEEEEEE---
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCccc--ccHHHhc----CcCCCCCEEEeecCcC
Confidence            568999999999999999999999999999999999999954 44444433  4555432    33333320000     


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      .++.-++......+.++.  .-+++++||+|.|+...      +..+.     ..+|++++|+-+..|-+-+.....++ 
T Consensus       101 G~lGGls~~t~~~v~ll~--aaG~D~IiiETVGvGQs------E~~I~-----~~aD~~v~v~~Pg~GD~iQ~~KaGim-  166 (266)
T PF03308_consen  101 GSLGGLSRATRDAVRLLD--AAGFDVIIIETVGVGQS------EVDIA-----DMADTVVLVLVPGLGDEIQAIKAGIM-  166 (266)
T ss_dssp             SSHHHHHHHHHHHHHHHH--HTT-SEEEEEEESSSTH------HHHHH-----TTSSEEEEEEESSTCCCCCTB-TTHH-
T ss_pred             CCCCCccHhHHHHHHHHH--HcCCCEEEEeCCCCCcc------HHHHH-----HhcCeEEEEecCCCccHHHHHhhhhh-
Confidence            011113445556666666  35699999999997442      12222     45799999998887777777665554 


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                              +++.|+|+||.|+...+   ....+++.........                .-....|++.+||.+|.|++
T Consensus       167 --------EiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~----------------~~~W~ppV~~tsA~~~~Gi~  219 (266)
T PF03308_consen  167 --------EIADIFVVNKADRPGAD---RTVRDLRSMLHLLRER----------------EDGWRPPVLKTSALEGEGID  219 (266)
T ss_dssp             --------HH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTS----------------CTSB--EEEEEBTTTTBSHH
T ss_pred             --------hhccEEEEeCCChHHHH---HHHHHHHHHHhhcccc----------------ccCCCCCEEEEEeCCCCCHH
Confidence                    45779999999944333   3333443332221100                00112589999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 014354          303 AYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRK  347 (426)
Q Consensus       303 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~  347 (426)
                      +|+++|.++.......-........+.+.++.+.+++.+++++.+
T Consensus       220 eL~~~i~~~~~~l~~sg~~~~rr~~q~~~~~~~~~~~~l~~~~~~  264 (266)
T PF03308_consen  220 ELWEAIDEHRDYLKESGELEERRREQARREMWELIEEELLERLRA  264 (266)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988766555433333444556777888888888887764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.81  E-value=2.6e-18  Score=163.13  Aligned_cols=235  Identities=20%  Similarity=0.275  Sum_probs=158.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-------
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-------  138 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-------  138 (426)
                      ..+..+|+|.|.||||||||+.+|.......+.+|+|+..||.. .+.+++.  +.|+++    |..+...||       
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGsi--LGDRiR----M~~~~~~~~vFiRs~~  120 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGSI--LGDRIR----MQRLAVDPGVFIRSSP  120 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCccc--cccHhh----HHhhccCCCeEEeecC
Confidence            45677999999999999999999999999999999999999954 4444433  355565    334443443       


Q ss_pred             -CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh
Q 014354          139 -GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       139 -g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                       .|....   +|......+.++.  ..++|++||+|.|....      ...+.     ..+|++++|.-+..|-+.+...
T Consensus       121 srG~lGG---lS~at~~~i~~ld--AaG~DvIIVETVGvGQs------ev~I~-----~~aDt~~~v~~pg~GD~~Q~iK  184 (323)
T COG1703         121 SRGTLGG---LSRATREAIKLLD--AAGYDVIIVETVGVGQS------EVDIA-----NMADTFLVVMIPGAGDDLQGIK  184 (323)
T ss_pred             CCccchh---hhHHHHHHHHHHH--hcCCCEEEEEecCCCcc------hhHHh-----hhcceEEEEecCCCCcHHHHHH
Confidence             333332   5566666777776  45699999999987442      22232     2358999988877766666655


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      ..++         ++..|+|+||.|+...+...   ..+...++...              ..........+++.+||.+
T Consensus       185 ~Gim---------EiaDi~vINKaD~~~A~~a~---r~l~~al~~~~--------------~~~~~~~W~ppv~~t~A~~  238 (323)
T COG1703         185 AGIM---------EIADIIVINKADRKGAEKAA---RELRSALDLLR--------------EVWRENGWRPPVVTTSALE  238 (323)
T ss_pred             hhhh---------hhhheeeEeccChhhHHHHH---HHHHHHHHhhc--------------ccccccCCCCceeEeeecc
Confidence            5444         56779999999955443222   12221111100              0011122346899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354          298 GAGIEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      |+|+++|+++|..+........-..-....+.+.++...++..+..++.+..
T Consensus       239 g~Gi~~L~~ai~~h~~~~~~sg~~~~~rr~q~~~~~~~~v~~~v~~~~~~~~  290 (323)
T COG1703         239 GEGIDELWDAIEDHRKFLTESGLFTEKRRTQYVEWIRTLVRDEVLDRLEANP  290 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHcch
Confidence            9999999999998877765544333344556677777888888887777554

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=3.5e-19  Score=178.53  Aligned_cols=164  Identities=19%  Similarity=0.283  Sum_probs=120.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ..+.+..|+|+|.||||||||||+|++...++            |+.+|+||    ||.+.              ..+. 
T Consensus       213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------VTdI~GTT----RDvie--------------e~i~-  261 (454)
T COG0486         213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAI------------VTDIAGTT----RDVIE--------------EDIN-  261 (454)
T ss_pred             hhhcCceEEEECCCCCcHHHHHHHHhcCCceE------------ecCCCCCc----cceEE--------------EEEE-
Confidence            35678999999999999999999999999875            89999999    77652              0011 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                                        -.++.+.++||+|+.+-  ....++. +.+.+.. ..+|+++||+|++......+..     
T Consensus       262 ------------------i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-----  316 (454)
T COG0486         262 ------------------LNGIPVRLVDTAGIRET--DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-----  316 (454)
T ss_pred             ------------------ECCEEEEEEecCCcccC--ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-----
Confidence                              25688999999999874  2333322 2223322 4589999999998875554422     


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ... ....++|+++|+||+|+..+......                              ......+++.+||++|+|++
T Consensus       317 ~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------~~~~~~~~i~iSa~t~~Gl~  365 (454)
T COG0486         317 LIE-LLPKKKPIIVVLNKADLVSKIELESE------------------------------KLANGDAIISISAKTGEGLD  365 (454)
T ss_pred             HHH-hcccCCCEEEEEechhcccccccchh------------------------------hccCCCceEEEEecCccCHH
Confidence            122 34567899999999999987642111                              01233469999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      .|.++|...+...
T Consensus       366 ~L~~~i~~~~~~~  378 (454)
T COG0486         366 ALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.81  E-value=9.4e-20  Score=166.90  Aligned_cols=183  Identities=19%  Similarity=0.276  Sum_probs=109.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+++|+.|+|||||+++|++..........       ..  ......+   ..   ..-...+...+.+....   
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~-------~~--~~~~~~~---~~---~~e~~~~~ti~~~~~~~---   63 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGI-------EE--TKNAFLD---KH---PEERERGITIDLSFISF---   63 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHH-------HH--HHHCHHH---SS---HHHHHCTSSSSSEEEEE---
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccc-------cc--ccccccc---cc---chhhhcccccccccccc---
Confidence            4578999999999999999999988643211000       00  0000000   00   00111222222111110   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .           .......+.||||||+.++.      ..+...  ...+|++|+|||+..+...++     ...+..+
T Consensus        64 -~-----------~~~~~~~i~~iDtPG~~~f~------~~~~~~--~~~~D~ailvVda~~g~~~~~-----~~~l~~~  118 (188)
T PF00009_consen   64 -E-----------KNENNRKITLIDTPGHEDFI------KEMIRG--LRQADIAILVVDANDGIQPQT-----EEHLKIL  118 (188)
T ss_dssp             -E-----------BTESSEEEEEEEESSSHHHH------HHHHHH--HTTSSEEEEEEETTTBSTHHH-----HHHHHHH
T ss_pred             -c-----------ccccccceeeccccccccee------ecccce--ecccccceeeeeccccccccc-----ccccccc
Confidence             0           01345789999999997642      112222  246899999999999887765     3455667


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHH-HHHHHhccccchhhhHHHHhhhhHhhhh--cCCceEEeecccCCCHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vv~vSA~~g~gv~~l  304 (426)
                      ...++|.|+|+||+|+. .....+..+.+. .|...              .     .+.  ...++|++||++|.|+..|
T Consensus       119 ~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~--------------~-----~~~~~~~~~vi~~Sa~~g~gi~~L  178 (188)
T PF00009_consen  119 RELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKE--------------Y-----GENGEEIVPVIPISALTGDGIDEL  178 (188)
T ss_dssp             HHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHH--------------T-----TSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred             cccccceEEeeeeccch-hhhHHHHHHHHHHHhccc--------------c-----ccCccccceEEEEecCCCCCHHHH
Confidence            78899999999999999 332333333332 22111              0     111  2468999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          305 FKAVEESAQ  313 (426)
Q Consensus       305 ~~~l~~~~~  313 (426)
                      +++|.+.+|
T Consensus       179 l~~l~~~~P  187 (188)
T PF00009_consen  179 LEALVELLP  187 (188)
T ss_dssp             HHHHHHHS-
T ss_pred             HHHHHHhCc
Confidence            999998876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=2.5e-18  Score=170.87  Aligned_cols=167  Identities=23%  Similarity=0.297  Sum_probs=106.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..-|+|+|+||||||||||+|++..             |.++.+|++|                  +.|+-|++..    
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~-------------~~va~ypfTT------------------~~p~~G~v~~----  202 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAK-------------PKIADYPFTT------------------LHPNLGVVRV----  202 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCC-------------CccCCCCCce------------------eCceEEEEEe----
Confidence            3579999999999999999999865             2367778777                  1222333321    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    .....++||||||+.+.... ..++....+.+  ..++++|+|+|++.......+    ..+...+
T Consensus       203 --------------~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~a~vlI~ViD~s~~~s~e~~----~~~~~EL  262 (335)
T PRK12299        203 --------------DDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRLLLHLVDIEAVDPVEDY----KTIRNEL  262 (335)
T ss_pred             --------------CCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hhcCEEEEEEcCCCCCCHHHH----HHHHHHH
Confidence                          13357999999999874221 12333333333  347899999999754321111    1111222


Q ss_pred             hh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          228 YK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       228 ~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ..     .++|.|||+||+|+.........  ....+..                     .  ...+++++||++|+|+.
T Consensus       263 ~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~~---------------------~--~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        263 EKYSPELADKPRILVLNKIDLLDEEEEREK--RAALELA---------------------A--LGGPVFLISAVTGEGLD  317 (335)
T ss_pred             HHhhhhcccCCeEEEEECcccCCchhHHHH--HHHHHHH---------------------h--cCCCEEEEEcCCCCCHH
Confidence            21     36899999999999865432111  1110000                     1  12579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+.+.
T Consensus       318 eL~~~L~~~l~~~  330 (335)
T PRK12299        318 ELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998877653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.78  E-value=4.4e-18  Score=151.88  Aligned_cols=162  Identities=17%  Similarity=0.274  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+++|++|||||||+|+|++....             +...++++    ....              -+...      
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------~~~~~~~t----~~~~--------------~~~~~------   43 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------VAPYPFTT----KSLF--------------VGHFD------   43 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc-------------cCCCCCcc----ccee--------------EEEEc------
Confidence            46999999999999999999987542             12223322    0000              00000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--hHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSI  226 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~  226 (426)
                                   ..+..+.||||||+.+...+..  ......... ...+|++++|+|+...... ....   ...+..
T Consensus        44 -------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~v~d~~~~~~~~~~~~---~~~~~~  106 (168)
T cd01897          44 -------------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-AHLRAAVLFLFDPSETCGYSLEEQ---LSLFEE  106 (168)
T ss_pred             -------------cCceEEEEEECCCcCCccccCCchHHHHHHHHH-HhccCcEEEEEeCCcccccchHHH---HHHHHH
Confidence                         1346899999999864311111  001111111 2336899999999764331 1111   122233


Q ss_pred             Hhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +...  +.|+|+|+||+|+........    ...+.                      . ....+++++||++|.|+.++
T Consensus       107 l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l  159 (168)
T cd01897         107 IKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEE----------------------E-LEGEEVLKISTLTEEGVDEV  159 (168)
T ss_pred             HHhhcCcCCeEEEEEccccCchhhHHH----HHHhh----------------------h-hccCceEEEEecccCCHHHH
Confidence            3333  799999999999987553322    11110                      1 13467999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      +++|.+.+
T Consensus       160 ~~~l~~~~  167 (168)
T cd01897         160 KNKACELL  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.78  E-value=5e-18  Score=150.29  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=69.7

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccC-CeEEEEecCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiDl  243 (426)
                      +..+.||||||+.++.      ..+...  ...+|++++|+|+..+.....+     ..+..+...+. |+++|+||+|+
T Consensus        50 ~~~~~~~DtpG~~~~~------~~~~~~--~~~ad~ii~V~d~~~~~~~~~~-----~~~~~~~~~~~~~~ilv~NK~Dl  116 (164)
T cd04171          50 GKRLGFIDVPGHEKFI------KNMLAG--AGGIDLVLLVVAADEGIMPQTR-----EHLEILELLGIKRGLVVLTKADL  116 (164)
T ss_pred             CcEEEEEECCChHHHH------HHHHhh--hhcCCEEEEEEECCCCccHhHH-----HHHHHHHHhCCCcEEEEEECccc
Confidence            3578999999986541      111111  2458999999999775443321     11222333344 99999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ............+......                    ..+...+++++||++|.|++++++.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         117 VDEDWLELVEEEIRELLAG--------------------TFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            8754222222222211100                    0113468999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.78  E-value=6.6e-18  Score=175.92  Aligned_cols=178  Identities=19%  Similarity=0.255  Sum_probs=113.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.||||||||+|+|++..+..            ++..++++    ++.+              ...+.    
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------~s~~~gtT----~d~~--------------~~~~~----  255 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------VDDVAGTT----VDPV--------------DSLIE----  255 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----CCcc--------------eEEEE----
Confidence            45899999999999999999999876432            34445444    2211              01111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                     ..+..+.||||||+.+... ...+..    +........+|++|+|+|+..+.+.+..     .+
T Consensus       256 ---------------~~~~~~~l~DTaG~~~~~~-~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-----~~  314 (472)
T PRK03003        256 ---------------LGGKTWRFVDTAGLRRRVK-QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-----RV  314 (472)
T ss_pred             ---------------ECCEEEEEEECCCcccccc-ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-----HH
Confidence                           1345788999999865321 111111    1111112458999999999987765442     23


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..+...++|+|||+||+|+............+..                 .+     ....+.+++++||++|.|+.+
T Consensus       315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-----------------~l-----~~~~~~~~~~~SAk~g~gv~~  372 (472)
T PRK03003        315 LSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-----------------EL-----AQVPWAPRVNISAKTGRAVDK  372 (472)
T ss_pred             HHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-----------------hc-----ccCCCCCEEEEECCCCCCHHH
Confidence            44455678999999999999864422111111110                 00     112346899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q 014354          304 YFKAVEESAQEFMETYKAD  322 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~  322 (426)
                      ++..+.+.+......++..
T Consensus       373 lf~~i~~~~~~~~~~i~t~  391 (472)
T PRK03003        373 LVPALETALESWDTRIPTG  391 (472)
T ss_pred             HHHHHHHHHHHhcccCCHH
Confidence            9999998877665554443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=3.9e-18  Score=175.93  Aligned_cols=170  Identities=21%  Similarity=0.274  Sum_probs=107.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|+|+|+||||||||||+|++..             |.++.+|++|                  +.|+-|++.     
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak-------------pkIadypfTT------------------l~P~lGvv~-----  202 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK-------------PKIADYPFTT------------------LVPNLGVVQ-----  202 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC-------------ccccccCccc------------------ccceEEEEE-----
Confidence            4589999999999999999999874             2366778877                  223334433     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC---CchhhhhhHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA---NPMTFMSNMLYAC  224 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~---~~~~~~~~~l~~~  224 (426)
                                    ..+.+++|+||||+++.... ..++....+.+  ..++++|+|||++...   ++..-.......+
T Consensus       203 --------------~~~~~f~laDtPGliegas~g~gLg~~fLrhi--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL  266 (500)
T PRK12296        203 --------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ERCAVLVHVVDCATLEPGRDPLSDIDALEAEL  266 (500)
T ss_pred             --------------ECCeEEEEEECCCCccccchhhHHHHHHHHHH--HhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence                          23468999999999764211 11222222222  4579999999997532   2211111111111


Q ss_pred             HHH-----------hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEe
Q 014354          225 SIL-----------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGV  293 (426)
Q Consensus       225 ~~l-----------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~v  293 (426)
                      ...           ...++|.|||+||+|+.....+.++.   ....                     ...  ..++++|
T Consensus       267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l---~~~l---------------------~~~--g~~Vf~I  320 (500)
T PRK12296        267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFV---RPEL---------------------EAR--GWPVFEV  320 (500)
T ss_pred             HHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHH---HHHH---------------------HHc--CCeEEEE
Confidence            111           12468999999999997554322221   1000                     011  2579999


Q ss_pred             ecccCCCHHHHHHHHHHHHHHHH
Q 014354          294 SSVSGAGIEAYFKAVEESAQEFM  316 (426)
Q Consensus       294 SA~~g~gv~~l~~~l~~~~~~~~  316 (426)
                      ||+++.|+.+|+.+|.+.+...+
T Consensus       321 SA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        321 SAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999998877654

>cd04163 Era Era subfamily

Probab=99.78  E-value=6.8e-18  Score=148.76  Aligned_cols=162  Identities=23%  Similarity=0.363  Sum_probs=100.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|++|||||||+|+|++....      ++.      ..+.++    +..              ..+++.     
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~------~~~------~~~~~~----~~~--------------~~~~~~-----   47 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKIS------IVS------PKPQTT----RNR--------------IRGIYT-----   47 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceE------ecc------CCCCce----ece--------------EEEEEE-----
Confidence            468999999999999999999987532      111      111111    000              011111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    ..+..+.+|||||+......  ....+....  ....+|++++|+|+........     ......
T Consensus        48 --------------~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~-----~~~~~~  106 (168)
T cd04163          48 --------------DDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSALKDVDLVLFVVDASEPIGEGD-----EFILEL  106 (168)
T ss_pred             --------------cCCeEEEEEECCCCCcchHH--HHHHHHHHHHHHHHhCCEEEEEEECCCccCchH-----HHHHHH
Confidence                          13468999999999765321  111121111  1244799999999987643322     122333


Q ss_pred             HhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +...+.|.++|+||+|+.. ......+...+.                         ......+++++|++++.|+++++
T Consensus       107 ~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~~~~~l~  161 (168)
T cd04163         107 LKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK-------------------------ELGPFAEIFPISALKGENVDELL  161 (168)
T ss_pred             HHHhCCCEEEEEEchhccccHHHHHHHHHHHH-------------------------hccCCCceEEEEeccCCChHHHH
Confidence            4455799999999999984 433333332222                         12234679999999999999999


Q ss_pred             HHHHHH
Q 014354          306 KAVEES  311 (426)
Q Consensus       306 ~~l~~~  311 (426)
                      ++|.+.
T Consensus       162 ~~l~~~  167 (168)
T cd04163         162 EEIVKY  167 (168)
T ss_pred             HHHHhh
Confidence            998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.77  E-value=1.3e-17  Score=171.71  Aligned_cols=178  Identities=20%  Similarity=0.294  Sum_probs=113.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|.+|+|||||+|+|++.....            ++..++++    ++.+              ...+.    
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~----  216 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVI------------VSDIAGTT----RDSI--------------DIPFE----  216 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeee------------cCCCCCce----ECcE--------------eEEEE----
Confidence            45789999999999999999999875321            33344443    1111              00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chH-HHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASG-AIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~-~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                     ..+..+.||||||+.+..... ... ....+.. ....+|++|+|+|+..+...++     ..++
T Consensus       217 ---------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~-----~~~~  276 (429)
T TIGR03594       217 ---------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD-----LRIA  276 (429)
T ss_pred             ---------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH-----HHHH
Confidence                           133579999999997653211 011 1112222 1245899999999998876655     2344


Q ss_pred             HHHhhccCCeEEEEecCCCC-ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..+...++|+|+|+||+|+. .......+...+..   .              +     .+..+.+++++||++|.|+.+
T Consensus       277 ~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~--------------~-----~~~~~~~vi~~SA~~g~~v~~  334 (429)
T TIGR03594       277 GLILEAGKALVIVVNKWDLVKDEKTREEFKKELRR---K--------------L-----PFLDFAPIVFISALTGQGVDK  334 (429)
T ss_pred             HHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHH---h--------------c-----ccCCCCceEEEeCCCCCCHHH
Confidence            55566789999999999998 33322223222221   0              0     123457899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 014354          304 YFKAVEESAQEFMETYKA  321 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~  321 (426)
                      +++++...........+.
T Consensus       335 l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       335 LLDAIDEVYENANRRIST  352 (429)
T ss_pred             HHHHHHHHHHHhcCcCCH
Confidence            999999877665444443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.77  E-value=7.5e-18  Score=167.20  Aligned_cols=167  Identities=20%  Similarity=0.329  Sum_probs=104.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..-|+|+|+||||||||||+|++..             |.++.+|++|                  +.|+-|++..    
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~-------------~~va~y~fTT------------------~~p~ig~v~~----  201 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAK-------------PKIADYPFTT------------------LVPNLGVVRV----  201 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCC-------------ccccCCCCCc------------------cCCEEEEEEe----
Confidence            3579999999999999999999865             2366777776                  1122233221    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~  225 (426)
                                    ....+++|+||||+.+.... ..++....+.+  ..++++|+|+|+...-  .+..........+.
T Consensus       202 --------------~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~  265 (329)
T TIGR02729       202 --------------DDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELK  265 (329)
T ss_pred             --------------CCceEEEEEeCCCcccCCcccccHHHHHHHHH--HhhCEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence                          12368999999999865321 12333333333  3478999999987531  12111111111111


Q ss_pred             HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ...  ..++|.|||+||+|+........+.+.+.                         ..+ ..+++++||++|+|+.+
T Consensus       266 ~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~-------------------------~~~-~~~vi~iSAktg~GI~e  319 (329)
T TIGR02729       266 KYSPELAEKPRIVVLNKIDLLDEEELAELLKELK-------------------------KAL-GKPVFPISALTGEGLDE  319 (329)
T ss_pred             HhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH-------------------------HHc-CCcEEEEEccCCcCHHH
Confidence            111  14789999999999987643322222111                         011 24699999999999999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      ++++|.+.+
T Consensus       320 L~~~I~~~l  328 (329)
T TIGR02729       320 LLYALAELL  328 (329)
T ss_pred             HHHHHHHHh
Confidence            999998654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01898 Obg Obg subfamily

Probab=99.77  E-value=1.1e-17  Score=149.36  Aligned_cols=165  Identities=19%  Similarity=0.311  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|.+|||||||+|+|.+....             ++..|+++    +..              .-+.+..      
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-------------v~~~~~~t----~~~--------------~~~~~~~------   44 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-------------IADYPFTT----LVP--------------NLGVVRV------   44 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-------------ccCCCccc----cCC--------------cceEEEc------
Confidence            4899999999999999999975421             33333333    100              0111110      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  .....+.||||||+.+..... .+.....+.+  ..+|++++|+|++...............+.... 
T Consensus        45 ------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~  110 (170)
T cd01898          45 ------------DDGRSFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNP  110 (170)
T ss_pred             ------------CCCCeEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCc
Confidence                        112388999999986532111 1222222222  347999999999865222121111111111111 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|.++|+||+|+........+...+.   .                     . ....+++++||++|.|+.+++++
T Consensus       111 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~---------------------~-~~~~~~~~~Sa~~~~gi~~l~~~  165 (170)
T cd01898         111 ELLEKPRIVVLNKIDLLDEEELFELLKELL---K---------------------E-LWGKPVFPISALTGEGLDELLRK  165 (170)
T ss_pred             cccccccEEEEEchhcCCchhhHHHHHHHH---h---------------------h-CCCCCEEEEecCCCCCHHHHHHH
Confidence             13689999999999987654333322211   0                     1 02356999999999999999999


Q ss_pred             HHHH
Q 014354          308 VEES  311 (426)
Q Consensus       308 l~~~  311 (426)
                      |.+.
T Consensus       166 i~~~  169 (170)
T cd01898         166 LAEL  169 (170)
T ss_pred             HHhh
Confidence            8764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=7.8e-18  Score=161.54  Aligned_cols=174  Identities=21%  Similarity=0.332  Sum_probs=115.8

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc-ccchhhhHHHHHHHHHcCCCCCC
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNG  139 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng  139 (426)
                      ..+......++|+|.|+||||||||+++|++..             |-+..+|+|| .+.+                   
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-------------pEvA~YPFTTK~i~v-------------------  207 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-------------PEVAPYPFTTKGIHV-------------------  207 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-------------CccCCCCccccceeE-------------------
Confidence            344456678899999999999999999999987             4589999998 2211                   


Q ss_pred             CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhh
Q 014354          140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                      |          ++.         .+...|++|||||+.+.. ...++.+-.++..  .+..++|+|++|++..+...-..
T Consensus       208 G----------hfe---------~~~~R~QvIDTPGlLDRP-l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~  267 (346)
T COG1084         208 G----------HFE---------RGYLRIQVIDTPGLLDRP-LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEE  267 (346)
T ss_pred             e----------eee---------cCCceEEEecCCcccCCC-hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHH
Confidence            1          111         245699999999998851 1222222222222  25689999999999888764333


Q ss_pred             hhHHHHHHHHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc
Q 014354          218 SNMLYACSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV  296 (426)
Q Consensus       218 ~~~l~~~~~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~  296 (426)
                      +..++  ..++ ....|+++|+||+|....+.+.+....+.   .                       -+....+.+++.
T Consensus       268 Q~~L~--~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~---~-----------------------~~~~~~~~~~~~  319 (346)
T COG1084         268 QISLL--EEIKELFKAPIVVVINKIDIADEEKLEEIEASVL---E-----------------------EGGEEPLKISAT  319 (346)
T ss_pred             HHHHH--HHHHHhcCCCeEEEEecccccchhHHHHHHHHHH---h-----------------------hccccccceeee
Confidence            32221  1222 33489999999999998775544432221   1                       012235668889


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 014354          297 SGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       297 ~g~gv~~l~~~l~~~~~~  314 (426)
                      .+.+++.+...+...+.+
T Consensus       320 ~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         320 KGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ehhhHHHHHHHHHHHhhc
Confidence            999999888777766544

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.77  E-value=5.4e-18  Score=153.65  Aligned_cols=186  Identities=20%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-CCccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSLNLFT  149 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-g~i~~~~~~ls  149 (426)
                      .|+|+|.+|||||||+|+|++.........++....           .+....      ....+..-. ......     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~~~~~~~~-----   58 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF-----------LDVLKE------ERERGITIKSGVATFE-----   58 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc-----------ccCCHH------HHHcCCCeecceEEEe-----
Confidence            389999999999999999999876543322211100           000000      000000000 000010     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   ....++.||||||+.++.      ......+  ..+|++++|+|+..+.....     ...+..+..
T Consensus        59 -------------~~~~~~~liDtpG~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~  112 (189)
T cd00881          59 -------------WPDRRVNFIDTPGHEDFS------SEVIRGL--SVSDGAILVVDANEGVQPQT-----REHLRIARE  112 (189)
T ss_pred             -------------eCCEEEEEEeCCCcHHHH------HHHHHHH--HhcCEEEEEEECCCCCcHHH-----HHHHHHHHH
Confidence                         124689999999986641      1111222  34799999999987664432     222334455


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|+++|+||+|+............+..+.........+        ...+ ......+++++||++|.|+.+++.+|.
T Consensus       113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~v~~~Sa~~g~gi~~l~~~l~  183 (189)
T cd00881         113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK--------EEGT-RNGLLVPIVPGSALTGIGVEELLEAIV  183 (189)
T ss_pred             CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh--------hhhc-ccCCcceEEEEecccCcCHHHHHHHHH
Confidence            7899999999999997544333333332221110000000        0000 012357899999999999999999998


Q ss_pred             HHHH
Q 014354          310 ESAQ  313 (426)
Q Consensus       310 ~~~~  313 (426)
                      ..++
T Consensus       184 ~~l~  187 (189)
T cd00881         184 EHLP  187 (189)
T ss_pred             hhCC
Confidence            8764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.77  E-value=1.3e-17  Score=181.71  Aligned_cols=178  Identities=18%  Similarity=0.219  Sum_probs=115.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++|+|+|.||||||||+|+|++..+..            ++..++++    ++.+              ...+.    
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------v~~~~gtT----~d~~--------------~~~~~----  494 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------VNDLAGTT----RDPV--------------DEIVE----  494 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccc------------cCCCCCCC----cCcc--------------eeEEE----
Confidence            34789999999999999999999886432            44555555    2221              01111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH---HHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                     ..+.++.||||||+.+.... ..+...   .+.. ....+|++++|+|+..+.+.++.     .+
T Consensus       495 ---------------~~~~~~~liDTaG~~~~~~~-~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~-----~i  553 (712)
T PRK09518        495 ---------------IDGEDWLFIDTAGIKRRQHK-LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL-----KV  553 (712)
T ss_pred             ---------------ECCCEEEEEECCCcccCccc-chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH-----HH
Confidence                           23467889999998654211 111111   1111 12458999999999988766542     23


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..+...++|+|||+||+|+........+...+..   .                  + .+..+.+++++||++|.|+.+
T Consensus       554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~---~------------------l-~~~~~~~ii~iSAktg~gv~~  611 (712)
T PRK09518        554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT---E------------------F-DRVTWARRVNLSAKTGWHTNR  611 (712)
T ss_pred             HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH---h------------------c-cCCCCCCEEEEECCCCCCHHH
Confidence            44455678999999999999875432222111110   0                  0 122457899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhH
Q 014354          304 YFKAVEESAQEFMETYKAD  322 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~  322 (426)
                      |++.+.+..+.+....+..
T Consensus       612 L~~~i~~~~~~~~~~i~T~  630 (712)
T PRK09518        612 LAPAMQEALESWDQRIPTG  630 (712)
T ss_pred             HHHHHHHHHHHhcccCChH
Confidence            9999999888765555543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.77  E-value=1.6e-17  Score=156.37  Aligned_cols=215  Identities=13%  Similarity=0.123  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|++++|||||+++|+...+..+......+.+-.......+.+        ..-....+|+...|.+.+...  ..
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t--------~~~~~~~~g~~~~~~~~~~~~--~~   70 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRT--------SSVSNEILGFDSDGEVVNYPD--NH   70 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCch--------hhhhhhhcccCCCCceecCCC--Cc
Confidence            37899999999999999999766655433333222211110000000        000112344444333222100  00


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                      ....-....  ...+..+.|+||||+.++.      ..+...+....+|++++|||+..+....+     ...+..+...
T Consensus        71 ~~~~~~~~~--~~~~~~i~liDtpG~~~~~------~~~~~~~~~~~~D~~llVvda~~g~~~~d-----~~~l~~l~~~  137 (224)
T cd04165          71 LSESDIEIC--EKSSKLVTFIDLAGHERYL------KTTLFGLTGYAPDYAMLVVAANAGIIGMT-----KEHLGLALAL  137 (224)
T ss_pred             cccccceee--eeCCcEEEEEECCCcHHHH------HHHHHhhcccCCCEEEEEEECCCCCcHHH-----HHHHHHHHHc
Confidence            000000011  1235678999999996642      22233333335899999999998876655     3445566778


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcccc-ch----hhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH-SY----TSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ++|+|+|+||+|+.+..........+..+........ .+    ....... +. ...+...+|+|++||.+|+|++.|+
T Consensus       138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~-~~-~~~~~~~~pi~~vSavtg~Gi~~L~  215 (224)
T cd04165         138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLA-AS-NFSSERIVPIFQVSNVTGEGLDLLH  215 (224)
T ss_pred             CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeeh-hh-cCCccccCcEEEeeCCCccCHHHHH
Confidence            8999999999999877655445544443322100000 00    0000000 00 0012334699999999999999998


Q ss_pred             HHHHH
Q 014354          306 KAVEE  310 (426)
Q Consensus       306 ~~l~~  310 (426)
                      ..|..
T Consensus       216 ~~L~~  220 (224)
T cd04165         216 AFLNL  220 (224)
T ss_pred             HHHHh
Confidence            87753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=1.5e-17  Score=171.74  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=114.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|+||+|||||+|+|++.....            ++..++++    ++.+.              ..+.    
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------~~~~~gtt----~~~~~--------------~~~~----  217 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------VSDIAGTT----RDSID--------------TPFE----  217 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCce----EEEEE--------------EEEE----
Confidence            46899999999999999999999875321            33334343    11110              0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-hH-HHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG-AIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-~~-~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                     ..+.++.||||||+........ .. ......+. ...+|++|+|+|+..+...++     ..++
T Consensus       218 ---------------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~-----~~i~  277 (435)
T PRK00093        218 ---------------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD-----LRIA  277 (435)
T ss_pred             ---------------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-----HHHH
Confidence                           1346799999999876422111 11 11122221 245799999999998876655     2344


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...++|+|+|+||+|+........+...+....                      .+..+.+++++||++|.|+.++
T Consensus       278 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l----------------------~~~~~~~i~~~SA~~~~gv~~l  335 (435)
T PRK00093        278 GLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL----------------------PFLDYAPIVFISALTGQGVDKL  335 (435)
T ss_pred             HHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc----------------------ccccCCCEEEEeCCCCCCHHHH
Confidence            555667899999999999986553333333222111                      1234678999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 014354          305 FKAVEESAQEFMETYK  320 (426)
Q Consensus       305 ~~~l~~~~~~~~~~~~  320 (426)
                      ++.+...........+
T Consensus       336 ~~~i~~~~~~~~~~i~  351 (435)
T PRK00093        336 LEAIDEAYENANRRIS  351 (435)
T ss_pred             HHHHHHHHHHHcCcCC
Confidence            9999887766544444

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.76  E-value=1.5e-17  Score=166.45  Aligned_cols=162  Identities=21%  Similarity=0.238  Sum_probs=98.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++|+|+|+||||||||+|+|++....             +...+++|    ++..              ...+.    
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-------------v~~~~~tT----~d~~--------------~~~i~----  232 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVY-------------AADQLFAT----LDPT--------------TRRLD----  232 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCccc----cCCE--------------EEEEE----
Confidence            4579999999999999999999987521             33444444    1111              00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    ...+..++||||||+.+..++..... +...+. ...+|++++|+|+++...... .......+..
T Consensus       233 --------------~~~~~~i~l~DT~G~~~~l~~~lie~-f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~  296 (351)
T TIGR03156       233 --------------LPDGGEVLLTDTVGFIRDLPHELVAA-FRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEE  296 (351)
T ss_pred             --------------eCCCceEEEEecCcccccCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHH
Confidence                          01346899999999854211111111 111221 235899999999976543221 1111222333


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +...++|+|+|+||+|+.......    ...                           ....++|++||++|.|+++|++
T Consensus       297 l~~~~~piIlV~NK~Dl~~~~~v~----~~~---------------------------~~~~~~i~iSAktg~GI~eL~~  345 (351)
T TIGR03156       297 LGAEDIPQLLVYNKIDLLDEPRIE----RLE---------------------------EGYPEAVFVSAKTGEGLDLLLE  345 (351)
T ss_pred             hccCCCCEEEEEEeecCCChHhHH----HHH---------------------------hCCCCEEEEEccCCCCHHHHHH
Confidence            333478999999999997643211    000                           0123589999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      +|.+.
T Consensus       346 ~I~~~  350 (351)
T TIGR03156       346 AIAER  350 (351)
T ss_pred             HHHhh
Confidence            98754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01878 HflX HflX subfamily

Probab=99.76  E-value=1.6e-17  Score=153.71  Aligned_cols=163  Identities=20%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++|+|+|++|||||||+|+|++.....             ...++++ ++   .              .-+.+..   
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~-------------~~~~~~t-~~---~--------------~~~~~~~---   85 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYA-------------EDQLFAT-LD---P--------------TTRRLRL---   85 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhcc-------------CCcccee-cc---c--------------eeEEEEe---
Confidence            45799999999999999999999975321             1111111 00   0              0000000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     .....+.||||||+.+..... ....+...+. ...+|++++|+|+......... ......+..
T Consensus        86 ---------------~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~  148 (204)
T cd01878          86 ---------------PDGREVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKE  148 (204)
T ss_pred             ---------------cCCceEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHH
Confidence                           122489999999986532111 1111111111 2357999999999765433221 111122222


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +...++|+++|+||+|+.......   ...                           .....+++++||++|.|+.++++
T Consensus       149 ~~~~~~~viiV~NK~Dl~~~~~~~---~~~---------------------------~~~~~~~~~~Sa~~~~gi~~l~~  198 (204)
T cd01878         149 LGAEDIPMILVLNKIDLLDDEELE---ERL---------------------------EAGRPDAVFISAKTGEGLDELLE  198 (204)
T ss_pred             cCcCCCCEEEEEEccccCChHHHH---HHh---------------------------hcCCCceEEEEcCCCCCHHHHHH
Confidence            233468999999999998765322   000                           11245799999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      +|...
T Consensus       199 ~L~~~  203 (204)
T cd01878         199 AIEEL  203 (204)
T ss_pred             HHHhh
Confidence            98764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01895 EngA2 EngA2 subfamily

Probab=99.76  E-value=4.1e-17  Score=145.20  Aligned_cols=167  Identities=22%  Similarity=0.340  Sum_probs=101.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+|+++|.+|+|||||+|+|++.....            ....+.++    +...              ...+.     
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~-----   46 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------VSDIAGTT----RDSI--------------DVPFE-----   46 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccee------------ccCCCCCc----cCce--------------eeEEE-----
Confidence            4679999999999999999999875321            11122222    0000              00000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HH-HHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GA-IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~-~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                    ..+.++.+|||||+.+....... .. .....+ ....+|++++|+|+........     ..++.
T Consensus        47 --------------~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~  107 (174)
T cd01895          47 --------------YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQD-----LRIAG  107 (174)
T ss_pred             --------------ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhH-----HHHHH
Confidence                          13357899999998765211111 11 111112 1245799999999987665433     22334


Q ss_pred             HHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+...+.|+++|+||+|+...  .....+.+.+..   .              +     ......+++++||++|.|+.+
T Consensus       108 ~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~--------------~-----~~~~~~~~~~~Sa~~~~~i~~  165 (174)
T cd01895         108 LILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRR---K--------------L-----PFLDYAPIVFISALTGQGVDK  165 (174)
T ss_pred             HHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHh---h--------------c-----ccccCCceEEEeccCCCCHHH
Confidence            445568999999999999876  322222222221   0              0     112346899999999999999


Q ss_pred             HHHHHHHH
Q 014354          304 YFKAVEES  311 (426)
Q Consensus       304 l~~~l~~~  311 (426)
                      +++++.+.
T Consensus       166 ~~~~l~~~  173 (174)
T cd01895         166 LFDAIDEV  173 (174)
T ss_pred             HHHHHHHh
Confidence            99988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.3e-18  Score=171.65  Aligned_cols=169  Identities=22%  Similarity=0.323  Sum_probs=122.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++|+|+++|+...||||||..|.+..+..+..+.|-..-                                |+....++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI--------------------------------GA~~v~~~   50 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI--------------------------------GAYQVPLD   50 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe--------------------------------eeEEEEec
Confidence            4778999999999999999999999987765443332111                                11111100


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                         .            .....+.|+|||||.-|.+.++.|.        ..+|++++||++.+++.+++     ..+...
T Consensus        51 ---~------------~~~~~itFiDTPGHeAFt~mRaRGa--------~vtDIaILVVa~dDGv~pQT-----iEAI~h  102 (509)
T COG0532          51 ---V------------IKIPGITFIDTPGHEAFTAMRARGA--------SVTDIAILVVAADDGVMPQT-----IEAINH  102 (509)
T ss_pred             ---c------------CCCceEEEEcCCcHHHHHHHHhcCC--------ccccEEEEEEEccCCcchhH-----HHHHHH
Confidence               0            0236899999999977643333333        45799999999999999998     556777


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ++..+.|+|+++||+|+....-- .....   |+               +.+...+.|.....+||+||++|+|+++|+.
T Consensus       103 ak~a~vP~iVAiNKiDk~~~np~-~v~~e---l~---------------~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~  163 (509)
T COG0532         103 AKAAGVPIVVAINKIDKPEANPD-KVKQE---LQ---------------EYGLVPEEWGGDVIFVPVSAKTGEGIDELLE  163 (509)
T ss_pred             HHHCCCCEEEEEecccCCCCCHH-HHHHH---HH---------------HcCCCHhhcCCceEEEEeeccCCCCHHHHHH
Confidence            88999999999999999954311 12211   11               2266667888889999999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      .+.....-
T Consensus       164 ~ill~aev  171 (509)
T COG0532         164 LILLLAEV  171 (509)
T ss_pred             HHHHHHHH
Confidence            88765544

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.75  E-value=1.5e-17  Score=148.16  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +.++.||||||+..+.       .+.. .....+|++++|+|+..+.....+     ..+..+...++|+++|+||+|+.
T Consensus        49 ~~~~~iiDtpG~~~~~-------~~~~-~~~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv~NK~Dl~  115 (168)
T cd01887          49 IPGITFIDTPGHEAFT-------NMRA-RGASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVALNKIDKP  115 (168)
T ss_pred             cceEEEEeCCCcHHHH-------HHHH-HHHhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEEEEceecc
Confidence            4789999999986542       1111 112457999999999876544332     23344556789999999999987


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      .... ..+...+..+...                 ....+....+++++||++|.|+.+++++|.+...
T Consensus       116 ~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         116 NANP-ERVKNELSELGLQ-----------------GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cccH-HHHHHHHHHhhcc-----------------ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            5321 1122222111000                 0001223467999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=2.5e-17  Score=167.78  Aligned_cols=164  Identities=24%  Similarity=0.334  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      -|+|+|.||||||||||+|++..             |.++.+|++|                  +.|+-|++..      
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak-------------~kIa~ypfTT------------------l~PnlG~v~~------  202 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK-------------PKIANYHFTT------------------LVPNLGVVET------  202 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC-------------CccccCCcce------------------eceEEEEEEE------
Confidence            89999999999999999999875             2356677776                  1223333321      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHHHH
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~~l  227 (426)
                                  ..+..++|+||||+.+...+ ..++....+.+  ..++++|+|||++...  .+..-.   ..+...+
T Consensus       203 ------------~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er~~llI~VID~s~~~~~dp~e~~---~~i~~EL  265 (424)
T PRK12297        203 ------------DDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ERTRVIVHVIDMSGSEGRDPIEDY---EKINKEL  265 (424)
T ss_pred             ------------eCCceEEEEECCCCcccccccchHHHHHHHHH--hhCCEEEEEEeCCccccCChHHHH---HHHHHHH
Confidence                        12468999999999764221 12233222222  3479999999986531  221111   1122222


Q ss_pred             h-----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          228 Y-----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       228 ~-----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .     ..++|.|||+||+|+.....   ..+.+.   .                      .+. .+++++||++|+|+.
T Consensus       266 ~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~---~----------------------~l~-~~i~~iSA~tgeGI~  316 (424)
T PRK12297        266 KLYNPRLLERPQIVVANKMDLPEAEE---NLEEFK---E----------------------KLG-PKVFPISALTGQGLD  316 (424)
T ss_pred             hhhchhccCCcEEEEEeCCCCcCCHH---HHHHHH---H----------------------HhC-CcEEEEeCCCCCCHH
Confidence            2     24789999999999843321   111111   1                      112 469999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 014354          303 AYFKAVEESAQEFME  317 (426)
Q Consensus       303 ~l~~~l~~~~~~~~~  317 (426)
                      +|+++|.+.+...++
T Consensus       317 eL~~~L~~~l~~~~~  331 (424)
T PRK12297        317 ELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHhCcc
Confidence            999999988776543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.74  E-value=4.3e-17  Score=147.96  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=96.4

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      .+..+.+.|+|+|++|+|||||+|+|++.....           .++..++++    ++                 ..+.
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------~~~~~~~~t----~~-----------------~~~~   60 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------RTSKTPGRT----QL-----------------INFF   60 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------cccCCCCcc----eE-----------------EEEE
Confidence            344677899999999999999999999874211           122222221    00                 0000


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhh
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                           .              .+.++.||||||+......    ......+...++. ..++++++|+|+..+......  
T Consensus        61 -----~--------------~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--  119 (179)
T TIGR03598        61 -----E--------------VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--  119 (179)
T ss_pred             -----E--------------eCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--
Confidence                 0              0136899999997543110    0111112223332 236899999999876655442  


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g  298 (426)
                         ..+..+...++|+++|+||+|+............++....                     ......++|++||++|
T Consensus       120 ---~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~---------------------~~~~~~~v~~~Sa~~g  175 (179)
T TIGR03598       120 ---EMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALK---------------------KDADDPSVQLFSSLKK  175 (179)
T ss_pred             ---HHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHh---------------------hccCCCceEEEECCCC
Confidence               2234455678999999999999876544333333322111                     1222357999999999


Q ss_pred             CCHH
Q 014354          299 AGIE  302 (426)
Q Consensus       299 ~gv~  302 (426)
                      +|++
T Consensus       176 ~gi~  179 (179)
T TIGR03598       176 TGID  179 (179)
T ss_pred             CCCC
Confidence            9973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.74  E-value=2.6e-17  Score=144.98  Aligned_cols=113  Identities=22%  Similarity=0.317  Sum_probs=72.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+.++.............+....+|++++|+|+.......       .....+...++|+|+|+||+|+..
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-------~~~~~~~~~~~~~iiv~NK~Dl~~  115 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL-------YLTLQLLELGLPVVVALNMIDEAE  115 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH-------HHHHHHHHcCCCEEEEEehhhhcc
Confidence            5789999999987643322222222223224689999999997632211       122234456899999999999976


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ..........+.   .                      . ...+++++||++|.|+..++.+|...
T Consensus       116 ~~~~~~~~~~~~---~----------------------~-~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         116 KRGIKIDLDKLS---E----------------------L-LGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             cccchhhHHHHH---H----------------------h-hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            543221111111   0                      0 13579999999999999999998765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.74  E-value=1.1e-17  Score=149.21  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi  241 (426)
                      +..+.+|||||+..+.       .+...+ ...++++++|+|+.....   +..........+.   ..++|+++|+||+
T Consensus        49 ~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~~~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  117 (167)
T cd04160          49 NARLKFWDLGGQESLR-------SLWDKY-YAECHAIIYVIDSTDRER---FEESKSALEKVLRNEALEGVPLLILANKQ  117 (167)
T ss_pred             CEEEEEEECCCChhhH-------HHHHHH-hCCCCEEEEEEECchHHH---HHHHHHHHHHHHhChhhcCCCEEEEEEcc
Confidence            4789999999997642       111111 245799999999865321   1111111111111   2479999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      |+............+.....              .      ......+++++||++|.|+++++++|.+
T Consensus       118 D~~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         118 DLPDALSVEEIKEVFQDKAE--------------E------IGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ccccCCCHHHHHHHhccccc--------------c------ccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            98764322222111110000              0      0012357999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01894 EngA1 EngA1 subfamily

Probab=99.74  E-value=2.4e-17  Score=144.70  Aligned_cols=111  Identities=24%  Similarity=0.276  Sum_probs=73.7

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD  242 (426)
                      +..+.||||||+.+...  .....+....  ....+|++++|+|+.........     .....+...+.|+++|+||+|
T Consensus        44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~nK~D  116 (157)
T cd01894          44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVNKVD  116 (157)
T ss_pred             CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEECcc
Confidence            46789999999987521  1222222221  12447999999999876554331     233445566899999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      +......   ...+.                         . ....+++++||++|.|+++++++|.+.
T Consensus       117 ~~~~~~~---~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         117 NIKEEDE---AAEFY-------------------------S-LGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             cCChHHH---HHHHH-------------------------h-cCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            9876532   11110                         0 122368999999999999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.2e-17  Score=166.48  Aligned_cols=168  Identities=20%  Similarity=0.309  Sum_probs=122.4

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ...+++|+|.|+|+...||||||.+|.+..++.+..+.|-..-                                |+...
T Consensus       148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI--------------------------------GAF~V  195 (683)
T KOG1145|consen  148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI--------------------------------GAFTV  195 (683)
T ss_pred             hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee--------------------------------ceEEE
Confidence            4567899999999999999999999999886643322221111                                11111


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      +       +          ..+..+.|+|||||.-|...++.|.        .-.|++|+||-+..|+-+++     +.+
T Consensus       196 ~-------~----------p~G~~iTFLDTPGHaAF~aMRaRGA--------~vtDIvVLVVAadDGVmpQT-----~Ea  245 (683)
T KOG1145|consen  196 T-------L----------PSGKSITFLDTPGHAAFSAMRARGA--------NVTDIVVLVVAADDGVMPQT-----LEA  245 (683)
T ss_pred             e-------c----------CCCCEEEEecCCcHHHHHHHHhccC--------ccccEEEEEEEccCCccHhH-----HHH
Confidence            1       1          2346889999999977643333333        33699999999999999988     566


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ....+..+.|+|+++||||..... ..+.+   +.|..               .+.+.+.+.+.+++|++||++|+|++.
T Consensus       246 IkhAk~A~VpiVvAinKiDkp~a~-pekv~---~eL~~---------------~gi~~E~~GGdVQvipiSAl~g~nl~~  306 (683)
T KOG1145|consen  246 IKHAKSANVPIVVAINKIDKPGAN-PEKVK---RELLS---------------QGIVVEDLGGDVQVIPISALTGENLDL  306 (683)
T ss_pred             HHHHHhcCCCEEEEEeccCCCCCC-HHHHH---HHHHH---------------cCccHHHcCCceeEEEeecccCCChHH
Confidence            677888999999999999977543 11222   22222               266777888999999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      |.+++.-.+
T Consensus       307 L~eaill~A  315 (683)
T KOG1145|consen  307 LEEAILLLA  315 (683)
T ss_pred             HHHHHHHHH
Confidence            999886554

>cd01889 SelB_euk SelB subfamily

Probab=99.74  E-value=1e-16  Score=147.12  Aligned_cols=120  Identities=21%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD  242 (426)
                      .+..+.||||||+..+         +...+. ...+|++++|+|+..+.......     .+......++|+++|+||+|
T Consensus        66 ~~~~~~i~DtpG~~~~---------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~D  131 (192)
T cd01889          66 ENLQITLVDCPGHASL---------IRTIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKID  131 (192)
T ss_pred             cCceEEEEECCCcHHH---------HHHHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcc
Confidence            3578999999998442         122222 23479999999998876544321     11122334789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +..........+.+....                 ...+.. .+...+++++||++|.|+.+|+++|....+.
T Consensus       132 l~~~~~~~~~~~~~~~~l-----------------~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         132 LIPEEERERKIEKMKKKL-----------------QKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCCHHHHHHHHHHHHHHH-----------------HHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            986543322222222110                 110101 1235789999999999999999999887653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.9e-17  Score=158.25  Aligned_cols=170  Identities=21%  Similarity=0.263  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .-|+++|+|||||||||++++..+             |.+..+|+||                  +.||-|++..     
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~Ak-------------PKIadYpFTT------------------L~PnLGvV~~-----  203 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAK-------------PKIADYPFTT------------------LVPNLGVVRV-----  203 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcC-------------CcccCCcccc------------------ccCcccEEEe-----
Confidence            358999999999999999999987             5589999999                  6678887763     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-  227 (426)
                                   ..+..+++-|.||+++..... .++..+.+.+.  .+-++++|||.+..-.. +.......+...+ 
T Consensus       204 -------------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE--Rt~vL~hviD~s~~~~~-dp~~~~~~i~~EL~  267 (369)
T COG0536         204 -------------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE--RTRVLLHVIDLSPIDGR-DPIEDYQTIRNELE  267 (369)
T ss_pred             -------------cCCCcEEEecCcccccccccCCCccHHHHHHHH--hhheeEEEEecCcccCC-CHHHHHHHHHHHHH
Confidence                         244679999999999974322 25565655553  35799999998754321 1111111122222 


Q ss_pred             ----hhccCCeEEEEecCCCCChH-hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          228 ----YKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       228 ----~~~~~P~IlVlNKiDl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                          .-.++|.+||+||+|+...+ .+..+.+.+.                         ....+...++|||.+++|++
T Consensus       268 ~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-------------------------~~~~~~~~~~ISa~t~~g~~  322 (369)
T COG0536         268 KYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-------------------------EALGWEVFYLISALTREGLD  322 (369)
T ss_pred             HhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH-------------------------HhcCCCcceeeehhcccCHH
Confidence                23578999999999966554 3333322222                         11222233339999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEFM  316 (426)
Q Consensus       303 ~l~~~l~~~~~~~~  316 (426)
                      +|...+.+.+....
T Consensus       323 ~L~~~~~~~l~~~~  336 (369)
T COG0536         323 ELLRALAELLEETK  336 (369)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999888877654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.73  E-value=6.1e-17  Score=149.27  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      ++.++.|+||||+.++.      ..+...  ...+|++++|||+..+...++     ..++..+...++| +|+|+||+|
T Consensus        63 ~~~~i~~iDtPG~~~~~------~~~~~~--~~~~D~~ilVvda~~g~~~~~-----~~~~~~~~~~~~~~iIvviNK~D  129 (195)
T cd01884          63 ANRHYAHVDCPGHADYI------KNMITG--AAQMDGAILVVSATDGPMPQT-----REHLLLARQVGVPYIVVFLNKAD  129 (195)
T ss_pred             CCeEEEEEECcCHHHHH------HHHHHH--hhhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCcEEEEEeCCC
Confidence            45789999999986531      112111  245899999999998877655     3345556677888 678999999


Q ss_pred             CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      +.......+ +.+.+..+...+              +.    ...++++|++||++|.++.
T Consensus       130 ~~~~~~~~~~~~~~i~~~l~~~--------------g~----~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         130 MVDDEELLELVEMEVRELLSKY--------------GF----DGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHh--------------cc----cccCCeEEEeeCccccCCC
Confidence            975443222 223333222210              00    0135889999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01890 LepA LepA subfamily

Probab=99.73  E-value=3.3e-17  Score=147.85  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=72.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ....+.||||||+.++.      ..+...+  ..+|++|+|+|+..+.....+     ..+..+...++|+|+|+||+|+
T Consensus        65 ~~~~~~l~Dt~G~~~~~------~~~~~~~--~~ad~~i~v~D~~~~~~~~~~-----~~~~~~~~~~~~iiiv~NK~Dl  131 (179)
T cd01890          65 QEYLLNLIDTPGHVDFS------YEVSRSL--AACEGALLLVDATQGVEAQTL-----ANFYLALENNLEIIPVINKIDL  131 (179)
T ss_pred             CcEEEEEEECCCChhhH------HHHHHHH--HhcCeEEEEEECCCCccHhhH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            44678899999997752      1222222  347999999999876554332     1122234568999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      ..... ......+.   ..              ++      .....++++||++|.|+++++++|...++
T Consensus       132 ~~~~~-~~~~~~~~---~~--------------~~------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         132 PSADP-ERVKQQIE---DV--------------LG------LDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             CcCCH-HHHHHHHH---HH--------------hC------CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            65321 11111111   10              00      12235899999999999999999987653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.73  E-value=5.4e-17  Score=171.65  Aligned_cols=136  Identities=21%  Similarity=0.324  Sum_probs=80.3

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+..+.       .+... ....+|++++|+|+..+..++++     ..+..+...++|.|+|+||+|+..
T Consensus        69 ~~l~~iDTpG~e~f~-------~l~~~-~~~~aD~~IlVvD~~~g~~~qt~-----e~i~~l~~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        69 PGLLFIDTPGHEAFT-------NLRKR-GGALADLAILIVDINEGFKPQTQ-----EALNILRMYKTPFVVAANKIDRIP  135 (590)
T ss_pred             CcEEEEECCCcHhHH-------HHHHH-HHhhCCEEEEEEECCcCCCHhHH-----HHHHHHHHcCCCEEEEEECCCccc
Confidence            468999999997652       11111 12457999999999988777663     234455667899999999999975


Q ss_pred             hHhH---HHHHHHHHHHHHHhccc-cchhhhHH---HHhhh------hHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          246 HEFA---LEWMQDFEVFQAAISSD-HSYTSTLT---NSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       246 ~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~------~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      ....   ..+.+........++.+ ...+..+.   ...+.      .+.+|+...++|++||++|+|+++|+.+|....
T Consensus       136 ~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       136 GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            2110   01111111111000000 00000000   11111      123566778999999999999999999887654


Q ss_pred             HH
Q 014354          313 QE  314 (426)
Q Consensus       313 ~~  314 (426)
                      ..
T Consensus       216 ~~  217 (590)
T TIGR00491       216 QQ  217 (590)
T ss_pred             HH
Confidence            43

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.73  E-value=5.4e-17  Score=150.62  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=73.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCC-CCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ..+.||||||+.++         +..++.. ..+|++++|+|+..+ .....+.     .+..+...+ .|+|||+||+|
T Consensus        83 ~~i~~iDtPG~~~~---------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-----~l~~~~~~~~~~iiivvNK~D  148 (203)
T cd01888          83 RHVSFVDCPGHEIL---------MATMLSGAAVMDGALLLIAANEPCPQPQTSE-----HLAALEIMGLKHIIIVQNKID  148 (203)
T ss_pred             cEEEEEECCChHHH---------HHHHHHhhhcCCEEEEEEECCCCCCCcchHH-----HHHHHHHcCCCcEEEEEEchh
Confidence            67899999997543         1122221 347999999999874 3333321     122233334 36899999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +..........+.++.+...                    ......++|++||++|.|+++|+++|.+.+++
T Consensus       149 l~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         149 LVKEEQALENYEQIKKFVKG--------------------TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             ccCHHHHHHHHHHHHHHHhc--------------------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            98755333333333221110                    01124679999999999999999999887765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=4.1e-17  Score=169.99  Aligned_cols=162  Identities=23%  Similarity=0.254  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++|+|+|.||||||||+|+|++.....            +...|+.+    ++.+.              +.+.    
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------v~~~~gvT----~d~~~--------------~~~~----   82 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------VEDVPGVT----RDRVS--------------YDAE----   82 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------ccCCCCCC----EeeEE--------------EEEE----
Confidence            44789999999999999999999865321            23333332    21110              0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.||||||+....  ..+...+....  ....+|++|+|+|+..+.....     ..+..
T Consensus        83 ---------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-----~~i~~  140 (472)
T PRK03003         83 ---------------WNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-----EAVAR  140 (472)
T ss_pred             ---------------ECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHHH
Confidence                           234578999999986421  11222222221  1235899999999998765433     22344


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+...++|+|+|+||+|+.....  ... .+.   .                       .+...++++||++|.|+.+|+
T Consensus       141 ~l~~~~~piilV~NK~Dl~~~~~--~~~-~~~---~-----------------------~g~~~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        141 VLRRSGKPVILAANKVDDERGEA--DAA-ALW---S-----------------------LGLGEPHPVSALHGRGVGDLL  191 (472)
T ss_pred             HHHHcCCCEEEEEECccCCccch--hhH-HHH---h-----------------------cCCCCeEEEEcCCCCCcHHHH
Confidence            55667899999999999865321  010 000   0                       122346899999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ++|...+++
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999987755

>PRK04213 GTP-binding protein; Provisional

Probab=99.72  E-value=9.8e-17  Score=148.04  Aligned_cols=171  Identities=21%  Similarity=0.207  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+++|.+|||||||+|+|++....             +...|+++    +...                 ..    
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-------------~~~~~~~t----~~~~-----------------~~----   49 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-------------VGKRPGVT----RKPN-----------------HY----   49 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCcee----eCce-----------------EE----
Confidence            4568999999999999999999986532             22223222    0000                 00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-----hHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhh--
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-----SGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMS--  218 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-----~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~--  218 (426)
                                      ...++.+|||||+........     ....+...+.  ...++++++|+|+.........|.  
T Consensus        50 ----------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~  113 (201)
T PRK04213         50 ----------------DWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR  113 (201)
T ss_pred             ----------------eecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence                            012689999999743211111     1111122222  134689999999865432211110  


Q ss_pred             ----hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc--CCceEE
Q 014354          219 ----NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVG  292 (426)
Q Consensus       219 ----~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~vv~  292 (426)
                          ........+...++|+++|+||+|+....  ......+.   .              .++.  ...+.  ..++++
T Consensus       114 ~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~---~--------------~~~~--~~~~~~~~~~~~~  172 (201)
T PRK04213        114 GEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIA---E--------------RLGL--YPPWRQWQDIIAP  172 (201)
T ss_pred             CCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHH---H--------------HhcC--CccccccCCcEEE
Confidence                01122333445689999999999997644  11111111   1              1110  00010  136899


Q ss_pred             eecccCCCHHHHHHHHHHHHHH
Q 014354          293 VSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       293 vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +||++| |+++++++|...+++
T Consensus       173 ~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        173 ISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             EecccC-CHHHHHHHHHHhhcC
Confidence            999999 999999999887654

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.72  E-value=5.5e-17  Score=167.64  Aligned_cols=157  Identities=21%  Similarity=0.263  Sum_probs=102.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +.+++|+|+|.||||||||+|+|++.....            ++..|++|    ++...              ..+.   
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~--------------~~i~---  259 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAI------------VTDIAGTT----RDVIE--------------EHIN---  259 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcc----cccEE--------------EEEE---
Confidence            355789999999999999999999875432            44455554    22110              0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                      ..+..+.||||||+.++.  ...... +...+ ....+|++++|+|++.......     ...+
T Consensus       260 ----------------~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-----~~~l  316 (449)
T PRK05291        260 ----------------LDGIPLRLIDTAGIRETD--DEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-----DEIL  316 (449)
T ss_pred             ----------------ECCeEEEEEeCCCCCCCc--cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-----HHHH
Confidence                            134678999999997642  111111 11111 1245799999999977654322     1112


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..  ..+.|+++|+||+|+.......      .                           ....+++++||++|.|+++|
T Consensus       317 ~~--~~~~piiiV~NK~DL~~~~~~~------~---------------------------~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        317 EE--LKDKPVIVVLNKADLTGEIDLE------E---------------------------ENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             Hh--cCCCCcEEEEEhhhccccchhh------h---------------------------ccCCceEEEEeeCCCCHHHH
Confidence            11  4578999999999997643211      0                           12346899999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>PRK09866 hypothetical protein; Provisional

Probab=99.72  E-value=2.4e-16  Score=163.74  Aligned_cols=118  Identities=16%  Similarity=0.064  Sum_probs=79.1

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc--CCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR--LPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~--~P~IlVlNKiD  242 (426)
                      ..+++|+||||+..+.. ..++..+.+.+  ..+|+|+||||+.......+     ..++..+.+.+  .|+++|+||+|
T Consensus       229 ~~QIIFVDTPGIhk~~~-~~L~k~M~eqL--~eADvVLFVVDat~~~s~~D-----eeIlk~Lkk~~K~~PVILVVNKID  300 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQ-PHLQKMLNQQL--ARASAVLAVLDYTQLKSISD-----EEVREAILAVGQSVPLYVLVNKFD  300 (741)
T ss_pred             cCCEEEEECCCCCCccc-hHHHHHHHHHH--hhCCEEEEEEeCCCCCChhH-----HHHHHHHHhcCCCCCEEEEEEccc
Confidence            47999999999987521 22444555543  45799999999988766554     23445566666  49999999999


Q ss_pred             CCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          243 VAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       243 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      +.+...  ...+...+.....                    .....+..+|||||++|.|+..|++.|..
T Consensus       301 l~dreeddkE~Lle~V~~~L~--------------------q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        301 QQDRNSDDADQVRALISGTLM--------------------KGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCcccchHHHHHHHHHHHHH--------------------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            975321  1122222211100                    01234678999999999999999999976

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.72  E-value=6.6e-17  Score=142.64  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.+|||||+.++.       .+...+. ..++++++|+|.....+......-...+.......++|+++|+||+|+..
T Consensus        49 ~~~~i~Dt~G~~~~~-------~l~~~~~-~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~  120 (162)
T cd04138          49 CLLDILDTAGQEEYS-------AMRDQYM-RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             EEEEEEECCCCcchH-------HHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            457789999987652       2222221 23688888888764321111100001111111235789999999999976


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ....   ......+..                     .  ...+++++||++|.|+.+++.+|.+.
T Consensus       121 ~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         121 RTVS---SRQGQDLAK---------------------S--YGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             ceec---HHHHHHHHH---------------------H--hCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            3211   111111110                     1  12479999999999999999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00157 Rho Rho (Ras homology) family

Probab=99.72  E-value=4.5e-17  Score=145.48  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|||||||+++|++..........+....        ...                       +...      
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--------~~~-----------------------~~~~------   44 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY--------SAT-----------------------VTVD------   44 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee--------EEE-----------------------EEEC------
Confidence            689999999999999999999875322111110000        000                       0000      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                  .....+.+|||||+.++.....        .....+|++++|+|+....   .+......++..+.  
T Consensus        45 ------------~~~~~l~~~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~  101 (171)
T cd00157          45 ------------GKQVNLGLWDTAGQEEYDRLRP--------LSYPNTDVFLICFSVDSPS---SFENVKTKWIPEIRHY  101 (171)
T ss_pred             ------------CEEEEEEEEeCCCcccccccch--------hhcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhh
Confidence                        1335789999999987521111        1113579999999987532   22222222222222  


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+........+.   .       .   ....+....+..+...++..+++++||++|.|+.+++.+|
T Consensus       102 ~~~~p~ivv~nK~Dl~~~~~~~~~~---~-------~---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  168 (171)
T cd00157         102 CPNVPIILVGTKIDLRDDENTLKKL---E-------K---GKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEA  168 (171)
T ss_pred             CCCCCEEEEEccHHhhhchhhhhhc---c-------c---CCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHH
Confidence            2369999999999998765332111   0       0   0000001111112233444589999999999999999988


Q ss_pred             HH
Q 014354          309 EE  310 (426)
Q Consensus       309 ~~  310 (426)
                      .+
T Consensus       169 ~~  170 (171)
T cd00157         169 IR  170 (171)
T ss_pred             hh
Confidence            64

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=4.3e-17  Score=167.91  Aligned_cols=159  Identities=25%  Similarity=0.273  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.||||||||+|+|++...+.            +...|+.+    ++..              .+.+.       
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~t----~d~~--------------~~~~~-------   43 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------VSDTPGVT----RDRK--------------YGDAE-------   43 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcce------------ecCCCCcc----cCce--------------EEEEE-------
Confidence            48999999999999999999876331            33334333    2221              01111       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                  ..+..+.||||||+....  ......+.....  ...+|++++|+|+..+....+     ..+...+.
T Consensus        44 ------------~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-----~~i~~~l~  104 (429)
T TIGR03594        44 ------------WGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-----EEIAKWLR  104 (429)
T ss_pred             ------------ECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-----HHHHHHHH
Confidence                        234579999999985431  111122222221  144899999999998776654     23445566


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      +.++|+++|+||+|+......  . ..+.                          ..++.+++++||++|.|+.++++++
T Consensus       105 ~~~~piilVvNK~D~~~~~~~--~-~~~~--------------------------~lg~~~~~~vSa~~g~gv~~ll~~i  155 (429)
T TIGR03594       105 KSGKPVILVANKIDGKKEDAV--A-AEFY--------------------------SLGFGEPIPISAEHGRGIGDLLDAI  155 (429)
T ss_pred             HhCCCEEEEEECccCCccccc--H-HHHH--------------------------hcCCCCeEEEeCCcCCChHHHHHHH
Confidence            778999999999998865421  1 1110                          1234579999999999999999999


Q ss_pred             HHHHHH
Q 014354          309 EESAQE  314 (426)
Q Consensus       309 ~~~~~~  314 (426)
                      ...++.
T Consensus       156 ~~~l~~  161 (429)
T TIGR03594       156 LELLPE  161 (429)
T ss_pred             HHhcCc
Confidence            887754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=6.9e-17  Score=154.50  Aligned_cols=169  Identities=20%  Similarity=0.245  Sum_probs=115.0

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG  140 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~  140 (426)
                      ........-..|+++|+|++|||||||+|++...             .+..+||||                  +.+..|
T Consensus        55 gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s-------------eva~y~FTT------------------l~~VPG  103 (365)
T COG1163          55 GFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS-------------EVADYPFTT------------------LEPVPG  103 (365)
T ss_pred             cceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc-------------cccccCcee------------------cccccc
Confidence            3344445567999999999999999999999873             478889988                  233356


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhh
Q 014354          141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN  219 (426)
Q Consensus       141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~  219 (426)
                      ++.                   .++.+++|+|+||+++..+.+ ..|.++....  ..||++++|+|+.......+....
T Consensus       104 ~l~-------------------Y~ga~IQild~Pgii~gas~g~grG~~vlsv~--R~ADlIiiVld~~~~~~~~~~i~~  162 (365)
T COG1163         104 MLE-------------------YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA--RNADLIIIVLDVFEDPHHRDIIER  162 (365)
T ss_pred             eEe-------------------ecCceEEEEcCcccccCcccCCCCcceeeeee--ccCCEEEEEEecCCChhHHHHHHH
Confidence            655                   377999999999999864322 2344444333  337999999999865542111111


Q ss_pred             HH---------------------------------------------------------------HHHHHHh--hccCCe
Q 014354          220 ML---------------------------------------------------------------YACSILY--KTRLPL  234 (426)
Q Consensus       220 ~l---------------------------------------------------------------~~~~~l~--~~~~P~  234 (426)
                      .+                                                               .+.+.+.  ..-+|.
T Consensus       163 ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~  242 (365)
T COG1163         163 ELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPA  242 (365)
T ss_pred             HHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeee
Confidence            10                                                               0111111  235799


Q ss_pred             EEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       235 IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      ++|+||+|+...+.+..+.+                             .   ...+++||..|.|+++|.+.|...+.
T Consensus       243 l~v~NKiD~~~~e~~~~l~~-----------------------------~---~~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         243 LYVVNKIDLPGLEELERLAR-----------------------------K---PNSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEEEecccccCHHHHHHHHh-----------------------------c---cceEEEecccCCCHHHHHHHHHHhhC
Confidence            99999999998654322211                             1   25999999999999999999988754

>cd04112 Rab26 Rab26 subfamily

Probab=99.72  E-value=4.9e-17  Score=149.17  Aligned_cols=170  Identities=19%  Similarity=0.223  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||++++++..+..+             ..+.+...+...                 ..+.    +. 
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-------------~~~~t~~~~~~~-----------------~~~~----~~-   46 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-------------NFIATVGIDFRN-----------------KVVT----VD-   46 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcc-------------CcCCcccceeEE-----------------EEEE----EC-
Confidence            689999999999999999988764321             111111110000                 0000    00 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  ....++.||||||+..+.       .+...+ ...+|++|+|+|+....+.... ...+..+......
T Consensus        47 ------------~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~ad~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~  105 (191)
T cd04112          47 ------------GVKVKLQIWDTAGQERFR-------SVTHAY-YRDAHALLLLYDITNKASFDNI-RAWLTEIKEYAQE  105 (191)
T ss_pred             ------------CEEEEEEEEeCCCcHHHH-------HhhHHH-ccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCC
Confidence                        123578999999986541       111111 1347999999999764322111 1111112222234


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ++|+++|+||+|+.......  ......+..                     . + ..+++++||++|.|+.+++.+|.+
T Consensus       106 ~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~---------------------~-~-~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112         106 DVVIMLLGNKADMSGERVVK--REDGERLAK---------------------E-Y-GVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             CCcEEEEEEcccchhccccC--HHHHHHHHH---------------------H-c-CCeEEEEeCCCCCCHHHHHHHHHH
Confidence            78999999999997532110  011111110                     1 1 257999999999999999999999


Q ss_pred             HHHHHHhhhhh
Q 014354          311 SAQEFMETYKA  321 (426)
Q Consensus       311 ~~~~~~~~~~~  321 (426)
                      .+......+|.
T Consensus       161 ~~~~~~~~~~~  171 (191)
T cd04112         161 ELKHRKYEQPD  171 (191)
T ss_pred             HHHHhccccCC
Confidence            98887665543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.72  E-value=7.4e-17  Score=143.34  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|++|||||||++++++..+....              +.+.    .+...            ....+.       
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--------------~~t~----~~~~~------------~~~~~~-------   44 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--------------DPTI----EDSYR------------KQIEID-------   44 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccc--------------CCch----hhhEE------------EEEEEC-------
Confidence            6899999999999999999987643211              1111    00000            000000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  .....+.+|||||+.++.       .+...+ ...++.+++|+|+....+......-...+.......
T Consensus        45 ------------~~~~~l~i~Dt~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  104 (164)
T smart00173       45 ------------GEVCLLDILDTAGQEEFS-------AMRDQY-MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD  104 (164)
T ss_pred             ------------CEEEEEEEEECCCcccch-------HHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                        123578899999997752       111111 123688999999865322111110001111222234


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ++|+|+|+||+|+.......  ......+.                      ..+ ..+++++||++|.|+.+++++|.+
T Consensus       105 ~~pii~v~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      105 DVPIVLVGNKCDLESERVVS--TEEGKELA----------------------RQW-GCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             CCCEEEEEECccccccceEc--HHHHHHHH----------------------HHc-CCEEEEeecCCCCCHHHHHHHHHH
Confidence            78999999999987642110  00111110                      111 267999999999999999999987


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.72  E-value=1e-16  Score=143.68  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=71.8

Q ss_pred             CCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCC-----CchhhhhhHHHHHHHHh-------hcc
Q 014354          165 HLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILY-------KTR  231 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-----~~~~~~~~~l~~~~~l~-------~~~  231 (426)
                      +..+.||||||+.+.... ......+...+  ..+|++++|+|+....     ............+....       ..+
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA  120 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHH--hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence            578999999998653211 11111222222  3479999999997763     22111111111111111       147


Q ss_pred             CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          232 LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       232 ~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      +|+++|+||+|+........+.  ...                       .......+++++||++|.|+.++++++...
T Consensus       121 ~p~ivv~NK~Dl~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         121 KPVIYVLNKIDLDDAEELEEEL--VRE-----------------------LALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             CCeEEEEEchhcCchhHHHHHH--HHH-----------------------HhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999998766443332  000                       012234679999999999999999988653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.72  E-value=8.8e-17  Score=142.59  Aligned_cols=160  Identities=13%  Similarity=0.127  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+..              ..+.+.......                .+.+.      
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~--------------~~~~t~~~~~~~----------------~~~~~------   46 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVT--------------DYDPTIEDSYTK----------------QCEID------   46 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCc--------------ccCCCccceEEE----------------EEEEC------
Confidence            589999999999999999999865322              111111000000                00000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH-HHHHh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSILY  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~l~  228 (426)
                                   .....+.+|||||+.++.      ......+  ..++++++|+|+....+... ....... .....
T Consensus        47 -------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  104 (164)
T cd04145          47 -------------GQWAILDILDTAGQEEFS------AMREQYM--RTGEGFLLVFSVTDRGSFEE-VDKFHTQILRVKD  104 (164)
T ss_pred             -------------CEEEEEEEEECCCCcchh------HHHHHHH--hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhC
Confidence                         123578899999987752      1111222  23689999999875332111 1111111 11112


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+|||+||+|+.......  ......+.                      ..+ ..+++++||++|.|+.+++++|
T Consensus       105 ~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145         105 RDEFPMILVGNKADLEHQRKVS--REEGQELA----------------------RKL-KIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             CCCCCEEEEeeCccccccceec--HHHHHHHH----------------------HHc-CCcEEEeeCCCCCCHHHHHHHH
Confidence            3478999999999987643211  00111110                      011 2579999999999999999999


Q ss_pred             HHHH
Q 014354          309 EESA  312 (426)
Q Consensus       309 ~~~~  312 (426)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            7653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PRK11058 GTPase HflX; Provisional

Probab=99.72  E-value=1.9e-16  Score=162.21  Aligned_cols=166  Identities=22%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .+.|+|+|.||||||||+|+|++..+.             +...+++|    ++..              ...+.     
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------v~~~~~tT----ld~~--------------~~~i~-----  240 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------AADQLFAT----LDPT--------------LRRID-----  240 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCCCC----cCCc--------------eEEEE-----
Confidence            368999999999999999999986532             33344443    1111              00000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   ......++||||||+.+..++..... +...+. ...+|++|+|+|+++...... .......+..+
T Consensus       241 -------------l~~~~~~~l~DTaG~~r~lp~~lve~-f~~tl~~~~~ADlIL~VvDaS~~~~~e~-l~~v~~iL~el  305 (426)
T PRK11058        241 -------------VADVGETVLADTVGFIRHLPHDLVAA-FKATLQETRQATLLLHVVDAADVRVQEN-IEAVNTVLEEI  305 (426)
T ss_pred             -------------eCCCCeEEEEecCcccccCCHHHHHH-HHHHHHHhhcCCEEEEEEeCCCccHHHH-HHHHHHHHHHh
Confidence                         01223788999999855311221111 222222 245899999999976432211 11111223333


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+++|+||+|+......  .   +.. .                      . .+...++.+||++|.|+++|+++
T Consensus       306 ~~~~~pvIiV~NKiDL~~~~~~--~---~~~-~----------------------~-~~~~~~v~ISAktG~GIdeL~e~  356 (426)
T PRK11058        306 DAHEIPTLLVMNKIDMLDDFEP--R---IDR-D----------------------E-ENKPIRVWLSAQTGAGIPLLFQA  356 (426)
T ss_pred             ccCCCCEEEEEEcccCCCchhH--H---HHH-H----------------------h-cCCCceEEEeCCCCCCHHHHHHH
Confidence            3457999999999999753210  0   100 0                      0 11112588999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      |.+.+..
T Consensus       357 I~~~l~~  363 (426)
T PRK11058        357 LTERLSG  363 (426)
T ss_pred             HHHHhhh
Confidence            9988754

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.71  E-value=1.5e-15  Score=149.25  Aligned_cols=235  Identities=17%  Similarity=0.201  Sum_probs=132.2

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...++.+|+|+|+||||||||+++|.......+.++.++..||... ......+  .+.++.    ..+...+. ..+..
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~-~~~~~~~--~~~~~~----~~~~~~~~-~~~~~  101 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP-FTGGSIL--GDRTRM----QRLATDPG-AFIRS  101 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC-cchhhhc--ccchhh----hhcccCCC-ceeee
Confidence            3456789999999999999999999998888889999999997541 1111111  122211    11111111 11111


Q ss_pred             cc------cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354          145 LN------LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       145 ~~------~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      +.      .++......+.++.  ..+++++||||||.....      ..+     ...+|.++++.+...+..-..+. 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~--~~g~D~viidT~G~~~~e------~~i-----~~~aD~i~vv~~~~~~~el~~~~-  167 (300)
T TIGR00750       102 MPTRGHLGGLSQATRELILLLD--AAGYDVIIVETVGVGQSE------VDI-----ANMADTFVVVTIPGTGDDLQGIK-  167 (300)
T ss_pred             cCccccccchhHHHHHHHHHHH--hCCCCEEEEeCCCCchhh------hHH-----HHhhceEEEEecCCccHHHHHHH-
Confidence            10      11223344444443  357999999999975421      111     12357888776543221111111 


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc-CCceEEeeccc
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVS  297 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~vv~vSA~~  297 (426)
                            .  ...++|.++|+||+|+............+..-...                 ....... ..+++++||++
T Consensus       168 ------~--~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~-----------------l~~~~~~~~~~v~~iSA~~  222 (300)
T TIGR00750       168 ------A--GLMEIADIYVVNKADGEGATNVTIARLMLALALEE-----------------IRRREDGWRPPVLTTSAVE  222 (300)
T ss_pred             ------H--HHhhhccEEEEEcccccchhHHHHHHHHHHHHHhh-----------------ccccccCCCCCEEEEEccC
Confidence                  1  12478899999999998765322111111100000                 0000001 24699999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhHHH---hHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354          298 GAGIEAYFKAVEESAQEFMETYKADLD---KRRAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      |.|+.+|+++|.+......   .....   .......++.+.+++.++..+.+..
T Consensus       223 g~Gi~~L~~~i~~~~~~~~---~~~~l~~~R~~~~l~~a~~~l~~~l~~~~~~~~  274 (300)
T TIGR00750       223 GRGIDELWDAIEEHKTFLT---ASGLLQEKRRQRSVEWLKKLVEEEVLKKVFANE  274 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            9999999999988754331   22222   2234455566677777777776544

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.71  E-value=7.9e-17  Score=151.30  Aligned_cols=193  Identities=20%  Similarity=0.269  Sum_probs=117.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+++|.+|||||||+++++...+.....       |.+       .++                      ....+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~-------~ti-------g~~----------------------~~~~~   54 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-------PTI-------GVE----------------------VHPLD   54 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccC-------Ccc-------cee----------------------EEEEE
Confidence            456799999999999999999988765432111       111       000                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      +..            ......+.||||||+..+.       .+...+ -..++++|+|+|.....+...    ...+...
T Consensus        55 ~~~------------~~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~~~~ilvfD~~~~~s~~~----i~~w~~~  110 (219)
T PLN03071         55 FFT------------NCGKIRFYCWDTAGQEKFG-------GLRDGY-YIHGQCAIIMFDVTARLTYKN----VPTWHRD  110 (219)
T ss_pred             EEE------------CCeEEEEEEEECCCchhhh-------hhhHHH-cccccEEEEEEeCCCHHHHHH----HHHHHHH
Confidence            000            0123688999999997752       121111 134689999999876432221    1111111


Q ss_pred             Hh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +.  ..++|++||+||+|+.......   ..+. +.                      . ....+++++||++|.|+.++
T Consensus       111 i~~~~~~~piilvgNK~Dl~~~~v~~---~~~~-~~----------------------~-~~~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071        111 LCRVCENIPIVLCGNKVDVKNRQVKA---KQVT-FH----------------------R-KKNLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             HHHhCCCCcEEEEEEchhhhhccCCH---HHHH-HH----------------------H-hcCCEEEEcCCCCCCCHHHH
Confidence            11  2468999999999986432110   0110 00                      0 12357899999999999999


Q ss_pred             HHHHHHHHHH--------HHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014354          305 FKAVEESAQE--------FMETYKADLDKRRAEKQRLEEERQKENINKLR  346 (426)
Q Consensus       305 ~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~  346 (426)
                      |.+|...+..        .++.+++++..........++.++++....+.
T Consensus       164 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (219)
T PLN03071        164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLP  213 (219)
T ss_pred             HHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCC
Confidence            9999987754        34567777777777777777777766655544

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.71  E-value=6.8e-17  Score=149.13  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=74.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHHHhhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ..+.||||||+..+.       .+.. .....+|++|+|+|+....+.... ...+ .+.......++|+|||+||+|+.
T Consensus        47 ~~l~i~D~~G~~~~~-------~~~~-~~~~~ad~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~  117 (198)
T cd04147          47 LTLDILDTSGSYSFP-------AMRK-LSIQNSDAFALVYAVDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSL  117 (198)
T ss_pred             EEEEEEECCCchhhh-------HHHH-HHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence            578899999987652       1111 112457999999998753322111 1111 11221223579999999999997


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK  320 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~  320 (426)
                      ............+. .                      ......+++++||++|.|+.+++++|.+.+....+.+|
T Consensus       118 ~~~~~v~~~~~~~~-~----------------------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~  170 (198)
T cd04147         118 EEERQVPAKDALST-V----------------------ELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP  170 (198)
T ss_pred             cccccccHHHHHHH-H----------------------HhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence            63211111000100 0                      00112568999999999999999999998877666665

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=1.3e-16  Score=151.97  Aligned_cols=164  Identities=23%  Similarity=0.301  Sum_probs=108.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..-|+++|+||||||||||+|+..+             |.|..+++||                  +.|+-|.+..    
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK-------------pkVa~YaFTT------------------L~P~iG~v~y----  240 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK-------------PKVAHYAFTT------------------LRPHIGTVNY----  240 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC-------------Ccccccceee------------------eccccceeec----
Confidence            4468999999999999999999987             5588899998                  3344443331    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~~~  225 (426)
                                    ....++.+-|.||+++-.. ...++..+.+.+  ..|..++||||.+....  +.+........+.
T Consensus       241 --------------ddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi--ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe  304 (366)
T KOG1489|consen  241 --------------DDFSQITVADIPGIIEGAHMNKGLGYKFLRHI--ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELE  304 (366)
T ss_pred             --------------cccceeEeccCccccccccccCcccHHHHHHH--HhhceEEEEEECCCcccCCHHHHHHHHHHHHH
Confidence                          1224589999999998632 334556555555  45689999999987632  2222211122222


Q ss_pred             HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ...  -...|.+||+||+|+...+.  ..   +..|...                      ..+..+|++||++|+|+..
T Consensus       305 ~yek~L~~rp~liVaNKiD~~eae~--~~---l~~L~~~----------------------lq~~~V~pvsA~~~egl~~  357 (366)
T KOG1489|consen  305 LYEKGLADRPALIVANKIDLPEAEK--NL---LSSLAKR----------------------LQNPHVVPVSAKSGEGLEE  357 (366)
T ss_pred             HHhhhhccCceEEEEeccCchhHHH--HH---HHHHHHH----------------------cCCCcEEEeeeccccchHH
Confidence            222  35789999999999863321  11   2222221                      1223599999999999999


Q ss_pred             HHHHHHH
Q 014354          304 YFKAVEE  310 (426)
Q Consensus       304 l~~~l~~  310 (426)
                      |++.|..
T Consensus       358 ll~~lr~  364 (366)
T KOG1489|consen  358 LLNGLRE  364 (366)
T ss_pred             HHHHHhh
Confidence            9988754

>cd04136 Rap_like Rap-like subfamily

Probab=99.71  E-value=6.5e-17  Score=143.27  Aligned_cols=159  Identities=14%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+...              ++.+.    ++...             ..+...     
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--------------~~~t~----~~~~~-------------~~~~~~-----   45 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEK--------------YDPTI----EDSYR-------------KQIEVD-----   45 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc--------------cCCch----hhhEE-------------EEEEEC-----
Confidence            5799999999999999999997654321              11111    00000             000000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-h
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-Y  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~  228 (426)
                                   .....+.||||||+.++.       .+...+ ...++++++|+|.....+... .......+... .
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~  103 (163)
T cd04136          46 -------------GQQCMLEILDTAGTEQFT-------AMRDLY-IKNGQGFVLVYSITSQSSFND-LQDLREQILRVKD  103 (163)
T ss_pred             -------------CEEEEEEEEECCCccccc-------hHHHHH-hhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC
Confidence                         123567899999997752       122221 134688999999864322111 11111111111 1


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+|+|+||+|+.......  ......+.                      ..+. .+++++||++|.|+.+++.+|
T Consensus       104 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~-~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04136         104 TENVPMVLVGNKCDLEDERVVS--REEGQALA----------------------RQWG-CPFYETSAKSKINVDEVFADL  158 (163)
T ss_pred             CCCCCEEEEEECccccccceec--HHHHHHHH----------------------HHcC-CeEEEecCCCCCCHHHHHHHH
Confidence            2468999999999987543211  01111111                      1122 679999999999999999998


Q ss_pred             HHH
Q 014354          309 EES  311 (426)
Q Consensus       309 ~~~  311 (426)
                      .+.
T Consensus       159 ~~~  161 (163)
T cd04136         159 VRQ  161 (163)
T ss_pred             HHh
Confidence            764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04154 Arl2 Arl2 subfamily

Probab=99.71  E-value=4.8e-17  Score=146.52  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=92.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|++|||||||+++|++.....        ..|       +..+.                      ..... 
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--------~~~-------t~g~~----------------------~~~~~-   54 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDT--------ISP-------TLGFQ----------------------IKTLE-   54 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC--------cCC-------ccccc----------------------eEEEE-
Confidence            44689999999999999999999863221        001       10000                      00000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.+|||||+..+.      ......+  ..+|++++|+|+...............++...
T Consensus        55 ---------------~~~~~l~l~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  111 (173)
T cd04154          55 ---------------YEGYKLNIWDVGGQKTLR------PYWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEE  111 (173)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence                           123678999999986541      1111122  35799999999876422111110011111111


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|++||+||+|+.......++...+.    .               ..   ......+++++||++|.|+++++++
T Consensus       112 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~---------------~~---~~~~~~~~~~~Sa~~g~gi~~l~~~  169 (173)
T cd04154         112 RLAGATLLILANKQDLPGALSEEEIREALE----L---------------DK---ISSHHWRIQPCSAVTGEGLLQGIDW  169 (173)
T ss_pred             hhcCCCEEEEEECcccccCCCHHHHHHHhC----c---------------cc---cCCCceEEEeccCCCCcCHHHHHHH
Confidence            235789999999999976432111111110    0               00   0012357999999999999999998


Q ss_pred             HHH
Q 014354          308 VEE  310 (426)
Q Consensus       308 l~~  310 (426)
                      +..
T Consensus       170 l~~  172 (173)
T cd04154         170 LVD  172 (173)
T ss_pred             Hhc
Confidence            753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.71  E-value=5.9e-16  Score=141.82  Aligned_cols=170  Identities=15%  Similarity=0.105  Sum_probs=102.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ....+.|+|+|.+|||||||+|+|++.....           .++..++++    +..                 .+.  
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~t----~~~-----------------~~~--   66 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLA-----------RTSKTPGRT----QLI-----------------NFF--   66 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------cccCCCCce----eEE-----------------EEE--
Confidence            3466789999999999999999999864211           011112111    000                 000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHhc-CCcEEEEEEeCCCCCCchhhhhhH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~~-~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                                       ..+.++.||||||+......    ......+...+... ..+++++|+|+.........    
T Consensus        67 -----------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----  125 (196)
T PRK00454         67 -----------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL----  125 (196)
T ss_pred             -----------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH----
Confidence                             01258999999997542100    01111222223322 34688899998766544331    


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                       .+...+...++|+++|+||+|+.+..........+.....                     ..  ..+++++||++|.|
T Consensus       126 -~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~---------------------~~--~~~~~~~Sa~~~~g  181 (196)
T PRK00454        126 -QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK---------------------FG--DDEVILFSSLKKQG  181 (196)
T ss_pred             -HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH---------------------hc--CCceEEEEcCCCCC
Confidence             1223345568999999999999876544333332321111                     11  46799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      +.++++.|...+.+
T Consensus       182 i~~l~~~i~~~~~~  195 (196)
T PRK00454        182 IDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999876643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.71  E-value=1.4e-16  Score=168.84  Aligned_cols=165  Identities=19%  Similarity=0.269  Sum_probs=104.5

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...++++|+|+|++|+|||||+++|.+..+..+..             ++.| ..                   -+... 
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~-------------~GIT-~~-------------------ig~~~-  128 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA-------------GGIT-QH-------------------IGAYH-  128 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccC-------------Ccee-ec-------------------ceEEE-
Confidence            35577899999999999999999999876443211             1111 00                   01000 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      .. +              .....+.||||||+..+..       +.. .....+|++++|+|+..+..++++     ..+
T Consensus       129 v~-~--------------~~~~~i~~iDTPGhe~F~~-------~r~-rga~~aDiaILVVda~dgv~~qT~-----e~i  180 (587)
T TIGR00487       129 VE-N--------------EDGKMITFLDTPGHEAFTS-------MRA-RGAKVTDIVVLVVAADDGVMPQTI-----EAI  180 (587)
T ss_pred             EE-E--------------CCCcEEEEEECCCCcchhh-------HHH-hhhccCCEEEEEEECCCCCCHhHH-----HHH
Confidence            00 0              0123789999999987631       111 112457999999999988766653     334


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...++|+|+++||+|+..... .++...+.                  ..+.....|....+++++||++|.|+.++
T Consensus       181 ~~~~~~~vPiIVviNKiDl~~~~~-e~v~~~L~------------------~~g~~~~~~~~~~~~v~iSAktGeGI~eL  241 (587)
T TIGR00487       181 SHAKAANVPIIVAINKIDKPEANP-DRVKQELS------------------EYGLVPEDWGGDTIFVPVSALTGDGIDEL  241 (587)
T ss_pred             HHHHHcCCCEEEEEECcccccCCH-HHHHHHHH------------------HhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence            455667899999999999964211 11111111                  01111223444568999999999999999


Q ss_pred             HHHHHH
Q 014354          305 FKAVEE  310 (426)
Q Consensus       305 ~~~l~~  310 (426)
                      +++|..
T Consensus       242 l~~I~~  247 (587)
T TIGR00487       242 LDMILL  247 (587)
T ss_pred             HHhhhh
Confidence            999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.71  E-value=6.8e-17  Score=168.41  Aligned_cols=175  Identities=23%  Similarity=0.329  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ..|+++|.||+|||||+|+|+|....             |.+.|+.| +.   +-              -|.+.      
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~-------------VgNwpGvT-VE---kk--------------eg~~~------   46 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQK-------------VGNWPGVT-VE---KK--------------EGKLK------   46 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCce-------------ecCCCCee-EE---EE--------------EEEEE------
Confidence            45999999999999999999999854             55566554 11   10              12222      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .++.++.++|.||+....+.+..+....+.+....+|++|.|||+++-..+       ++..-.+..
T Consensus        47 -------------~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRn-------LyltlQLlE  106 (653)
T COG0370          47 -------------YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERN-------LYLTLQLLE  106 (653)
T ss_pred             -------------ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHH-------HHHHHHHHH
Confidence                         245789999999999886665555656666667789999999999764332       333334667


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|+|+++|++|..++...   .-+.+.|...                       =.+|++++||++|+|+++++..+.
T Consensus       107 ~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~-----------------------LGvPVv~tvA~~g~G~~~l~~~i~  160 (653)
T COG0370         107 LGIPMILALNMIDEAKKRGI---RIDIEKLSKL-----------------------LGVPVVPTVAKRGEGLEELKRAII  160 (653)
T ss_pred             cCCCeEEEeccHhhHHhcCC---cccHHHHHHH-----------------------hCCCEEEEEeecCCCHHHHHHHHH
Confidence            89999999999998776532   1122222211                       147899999999999999999998


Q ss_pred             HHHHHHH----hhhhhHHHhHH
Q 014354          310 ESAQEFM----ETYKADLDKRR  327 (426)
Q Consensus       310 ~~~~~~~----~~~~~~~~~~~  327 (426)
                      +..+...    ..|+....+..
T Consensus       161 ~~~~~~~~~~~~~y~~~ie~~i  182 (653)
T COG0370         161 ELAESKTTPREVDYGEEIEEEI  182 (653)
T ss_pred             HhccccccccccccchHHHHHH
Confidence            7655432    34555544333

>cd04149 Arf6 Arf6 subfamily

Probab=99.71  E-value=7.8e-17  Score=144.90  Aligned_cols=157  Identities=18%  Similarity=0.201  Sum_probs=91.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+++|.+|||||||+++|....+..              ..| +..++..                   ...    
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--------------~~~-t~g~~~~-------------------~~~----   49 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--------------TIP-TVGFNVE-------------------TVT----   49 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc--------------ccC-CcccceE-------------------EEE----
Confidence            45789999999999999999998654221              011 1101000                   000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .....+.||||||+..+.       .+...+ -..++++|+|+|+....+....   ...+...+
T Consensus        50 ---------------~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~a~~ii~v~D~t~~~s~~~~---~~~~~~~~  103 (168)
T cd04149          50 ---------------YKNVKFNVWDVGGQDKIR-------PLWRHY-YTGTQGLIFVVDSADRDRIDEA---RQELHRII  103 (168)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH-------HHHHHH-hccCCEEEEEEeCCchhhHHHH---HHHHHHHh
Confidence                           134689999999996641       111111 1347999999999764322111   11111222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..+.|++||+||+|+.......++...+. +                  ..   ......+++++||++|.|+.++
T Consensus       104 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~------------------~~---~~~~~~~~~~~SAk~g~gv~~~  161 (168)
T cd04149         104 NDREMRDALLLVFANKQDLPDAMKPHEIQEKLG-L------------------TR---IRDRNWYVQPSCATSGDGLYEG  161 (168)
T ss_pred             cCHhhcCCcEEEEEECcCCccCCCHHHHHHHcC-C------------------Cc---cCCCcEEEEEeeCCCCCChHHH
Confidence            2   23589999999999864321111111110 0                  00   0011236899999999999999


Q ss_pred             HHHHHH
Q 014354          305 FKAVEE  310 (426)
Q Consensus       305 ~~~l~~  310 (426)
                      +++|.+
T Consensus       162 ~~~l~~  167 (168)
T cd04149         162 LTWLSS  167 (168)
T ss_pred             HHHHhc
Confidence            999853

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.71  E-value=6.3e-17  Score=145.39  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=71.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK  240 (426)
                      .+..+.||||||+.++.      ......+  ..+|+++||+|++...+-..   ....+...+.   ..+.|++||+||
T Consensus        41 ~~~~i~l~Dt~G~~~~~------~~~~~~~--~~ad~ii~V~D~s~~~s~~~---~~~~~~~~~~~~~~~~~piilv~NK  109 (169)
T cd04158          41 KNLKFTIWDVGGKHKLR------PLWKHYY--LNTQAVVFVVDSSHRDRVSE---AHSELAKLLTEKELRDALLLIFANK  109 (169)
T ss_pred             CCEEEEEEECCCChhcc------hHHHHHh--ccCCEEEEEEeCCcHHHHHH---HHHHHHHHhcChhhCCCCEEEEEeC
Confidence            34688999999997642      1111112  34799999999875321111   1111122222   234899999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHHHHHHHHHHHHHh
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVEESAQEFME  317 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~  317 (426)
                      +|+............+. +.                      ..  .....++++||++|.|+.+++++|.+.+.++.+
T Consensus       110 ~Dl~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~  165 (169)
T cd04158         110 QDVAGALSVEEMTELLS-LH----------------------KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             cCcccCCCHHHHHHHhC-Cc----------------------cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhccc
Confidence            99864321111111110 00                      00  012357899999999999999999988777654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.70  E-value=1.7e-16  Score=140.51  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|++|||||||++++++..+.....              .+.    .+...             ..+..       
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~--------------~~~----~~~~~-------------~~~~~-------   43 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEFVEDYE--------------PTK----ADSYR-------------KKVVL-------   43 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCccccC--------------Ccc----hhhEE-------------EEEEE-------
Confidence            68999999999999999999876442111              010    00000             00000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                 ......+.||||||+.++.       .+...+ ...++.+++|+|.....+-.....-...+.......
T Consensus        44 -----------~~~~~~~~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  104 (164)
T cd04139          44 -----------DGEDVQLNILDTAGQEDYA-------AIRDNY-HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDD  104 (164)
T ss_pred             -----------CCEEEEEEEEECCChhhhh-------HHHHHH-hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                       0133578999999987652       111111 134578888888754221110000001111111135


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ++|+++|+||+|+......  .......+..                     . + ..+++++||++|.|+.++++++.+
T Consensus       105 ~~piiiv~NK~D~~~~~~~--~~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         105 NVPLLLVGNKCDLEDKRQV--SSEEAANLAR---------------------Q-W-GVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             CCCEEEEEEcccccccccc--CHHHHHHHHH---------------------H-h-CCeEEEeeCCCCCCHHHHHHHHHH
Confidence            7999999999999762211  1111111111                     1 1 257999999999999999999987


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.70  E-value=1.8e-16  Score=144.54  Aligned_cols=123  Identities=11%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+..+.||||||+..+.       .+...+ ...+|++++|+|+...............+.......++|++||+||+|+
T Consensus        50 ~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~  121 (183)
T cd04152          50 KGITFHFWDVGGQEKLR-------PLWKSY-TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDL  121 (183)
T ss_pred             CceEEEEEECCCcHhHH-------HHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence            34678999999986541       122221 1347999999998764221111111111222223457999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      ........+. .+..++..                    ......+++++||++|.|+.+++++|.+.+.+.
T Consensus       122 ~~~~~~~~~~-~~~~~~~~--------------------~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~  172 (183)
T cd04152         122 PNALSVSEVE-KLLALHEL--------------------SASTPWHVQPACAIIGEGLQEGLEKLYEMILKR  172 (183)
T ss_pred             cccCCHHHHH-HHhCcccc--------------------CCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence            6432111111 11000000                    001124689999999999999999998777543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.70  E-value=1.2e-16  Score=173.15  Aligned_cols=164  Identities=19%  Similarity=0.263  Sum_probs=105.8

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...++++|+|+|++|+|||||+++|.+..+..+..             ++.| ..                   .+.+. 
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~-------------~GIT-~~-------------------iga~~-  331 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA-------------GGIT-QH-------------------IGAYQ-  331 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccc-------------Ccee-ee-------------------ccEEE-
Confidence            35688999999999999999999998765432211             0000 00                   01100 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      ..                ..+..+.||||||+..+..       +.. .....+|++|+|||+..+..++++     ..+
T Consensus       332 v~----------------~~~~~ItfiDTPGhe~F~~-------m~~-rga~~aDiaILVVdAddGv~~qT~-----e~i  382 (787)
T PRK05306        332 VE----------------TNGGKITFLDTPGHEAFTA-------MRA-RGAQVTDIVVLVVAADDGVMPQTI-----EAI  382 (787)
T ss_pred             EE----------------ECCEEEEEEECCCCccchh-------HHH-hhhhhCCEEEEEEECCCCCCHhHH-----HHH
Confidence            00                1246789999999987621       111 112447999999999988776653     334


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...++|+|+|+||+|+.... ...+...+..                  .+...+.|....++|++||++|.|+.+|
T Consensus       383 ~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~------------------~~~~~e~~g~~vp~vpvSAktG~GI~eL  443 (787)
T PRK05306        383 NHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSE------------------YGLVPEEWGGDTIFVPVSAKTGEGIDEL  443 (787)
T ss_pred             HHHHhcCCcEEEEEECccccccC-HHHHHHHHHH------------------hcccHHHhCCCceEEEEeCCCCCCchHH
Confidence            55666789999999999996532 1112222111                  0111223444578999999999999999


Q ss_pred             HHHHHH
Q 014354          305 FKAVEE  310 (426)
Q Consensus       305 ~~~l~~  310 (426)
                      +++|..
T Consensus       444 le~I~~  449 (787)
T PRK05306        444 LEAILL  449 (787)
T ss_pred             HHhhhh
Confidence            999875

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.70  E-value=2.8e-16  Score=137.73  Aligned_cols=154  Identities=19%  Similarity=0.283  Sum_probs=96.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+|+++|++|||||||+|+|++.....            ....+.++    ++..              ...+.     
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~-----   45 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAI------------VSDIAGTT----RDVI--------------EESID-----   45 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEe------------ccCCCCCc----cceE--------------EEEEE-----
Confidence            3579999999999999999999875321            12222222    0000              00000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ..+..+.+|||||+.+....... ..+.... ....++++++|+|+..........     ...  
T Consensus        46 --------------~~~~~~~i~DtpG~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-----~~~--  103 (157)
T cd04164          46 --------------IGGIPVRLIDTAGIRETEDEIEK-IGIERAREAIEEADLVLFVIDASRGLDEEDLE-----ILE--  103 (157)
T ss_pred             --------------eCCEEEEEEECCCcCCCcchHHH-HHHHHHHHHHhhCCEEEEEEECCCCCCHHHHH-----HHH--
Confidence                          12357899999998775321111 1111111 123579999999998754433211     111  


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|+++|+||+|+......      .                          ......+++++||.+|.|+.+++++
T Consensus       104 ~~~~~~vi~v~nK~D~~~~~~~------~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~  151 (157)
T cd04164         104 LPADKPIIVVLNKSDLLPDSEL------L--------------------------SLLAGKPIIAISAKTGEGLDELKEA  151 (157)
T ss_pred             hhcCCCEEEEEEchhcCCcccc------c--------------------------cccCCCceEEEECCCCCCHHHHHHH
Confidence            1457999999999999875532      0                          0123467999999999999999999


Q ss_pred             HHHH
Q 014354          308 VEES  311 (426)
Q Consensus       308 l~~~  311 (426)
                      |...
T Consensus       152 l~~~  155 (157)
T cd04164         152 LLEL  155 (157)
T ss_pred             HHHh
Confidence            8764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.70  E-value=2.4e-16  Score=159.79  Aligned_cols=85  Identities=18%  Similarity=0.078  Sum_probs=67.0

Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH-HHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA-YFKAV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~-l~~~l  308 (426)
                      ..+|+|+|+||+|......   ....+.                         ++ ++..++++||+.+.++.. +++.+
T Consensus       216 t~KPvI~VlNK~D~~~~~~---~l~~i~-------------------------~~-~~~~vvpISA~~e~~l~~~l~~~i  266 (396)
T PRK09602        216 ISKPMVIAANKADLPPAEE---NIERLK-------------------------EE-KYYIVVPTSAEAELALRRAAKAGL  266 (396)
T ss_pred             cCCCEEEEEEchhcccchH---HHHHHH-------------------------hc-CCCcEEEEcchhhhhHHHHHHHhH
Confidence            4589999999999764321   111111                         12 456799999999999999 89999


Q ss_pred             HHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014354          309 EESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLR  346 (426)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~  346 (426)
                      .+.+|+.+++||.+..++.+.+  +.|.+| ++|..+.
T Consensus       267 ~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g  301 (396)
T PRK09602        267 IDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG  301 (396)
T ss_pred             HhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence            9999999999999998988877  888888 8887654

>cd04175 Rap1 Rap1 subgroup

Probab=99.70  E-value=1.3e-16  Score=142.03  Aligned_cols=114  Identities=10%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhhccCCeEEEEecCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+.+.||||||+..+.       .+...+ -..+|++++|+|.....+... ...... +.......+.|++||+||+|+
T Consensus        48 ~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl  118 (164)
T cd04175          48 QCMLEILDTAGTEQFT-------AMRDLY-MKNGQGFVLVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDL  118 (164)
T ss_pred             EEEEEEEECCCcccch-------hHHHHH-HhhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence            3567899999997752       122211 133688888998754322111 111111 111112356899999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      .......  ......+.                      ..+ ..+++++||++|.|+.+++.+|.+.+
T Consensus       119 ~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         119 EDERVVG--KEQGQNLA----------------------RQW-GCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             hhccEEc--HHHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            7542110  00111110                      111 25799999999999999999998654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.70  E-value=1.2e-16  Score=171.74  Aligned_cols=169  Identities=17%  Similarity=0.311  Sum_probs=106.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++++|+|+|++|+|||||+++|++..+..+..             ++.+ ..                   -+.+. .
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~-------------~GiT-q~-------------------i~~~~-v  286 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA-------------GGIT-QK-------------------IGAYE-V  286 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccC-------------Cccc-cc-------------------cceEE-E
Confidence            4678899999999999999999998876443211             0000 00                   00000 0


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      . +..           ...+..+.||||||+..+.      ......+  ..+|++|+|||+..+..++++     ..+.
T Consensus       287 ~-~~~-----------~~~~~kItfiDTPGhe~F~------~mr~rg~--~~aDiaILVVDA~dGv~~QT~-----E~I~  341 (742)
T CHL00189        287 E-FEY-----------KDENQKIVFLDTPGHEAFS------SMRSRGA--NVTDIAILIIAADDGVKPQTI-----EAIN  341 (742)
T ss_pred             E-EEe-----------cCCceEEEEEECCcHHHHH------HHHHHHH--HHCCEEEEEEECcCCCChhhH-----HHHH
Confidence            0 000           0124689999999997652      1111112  347999999999988777653     3445


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+...++|+|+|+||+|+.... ...+...+...                  ....+.+....+++++||++|.|+.+|+
T Consensus       342 ~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~------------------~ll~e~~g~~vpvv~VSAktG~GIdeLl  402 (742)
T CHL00189        342 YIQAANVPIIVAINKIDKANAN-TERIKQQLAKY------------------NLIPEKWGGDTPMIPISASQGTNIDKLL  402 (742)
T ss_pred             HHHhcCceEEEEEECCCccccC-HHHHHHHHHHh------------------ccchHhhCCCceEEEEECCCCCCHHHHH
Confidence            5666789999999999997632 11122221100                  1111223345789999999999999999


Q ss_pred             HHHHHHH
Q 014354          306 KAVEESA  312 (426)
Q Consensus       306 ~~l~~~~  312 (426)
                      ++|....
T Consensus       403 e~I~~l~  409 (742)
T CHL00189        403 ETILLLA  409 (742)
T ss_pred             Hhhhhhh
Confidence            9987654

>cd04151 Arl1 Arl1 subfamily

Probab=99.70  E-value=7e-17  Score=143.07  Aligned_cols=113  Identities=18%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi  241 (426)
                      +..+.||||||+..+.       .+...+ ...++++|+|+|+........   ....+...+.   ..++|++||+||+
T Consensus        42 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piiiv~nK~  110 (158)
T cd04151          42 NLKFQVWDLGGQTSIR-------PYWRCY-YSNTDAIIYVVDSTDRDRLGT---AKEELHAMLEEEELKGAVLLVFANKQ  110 (158)
T ss_pred             CEEEEEEECCCCHHHH-------HHHHHH-hcCCCEEEEEEECCCHHHHHH---HHHHHHHHHhchhhcCCcEEEEEeCC
Confidence            4678999999997641       111111 135899999999875322111   0111111122   2478999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      |+.......++...+.                     ... ......+++++||++|.|+.+++++|.+
T Consensus       111 Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         111 DMPGALSEAEISEKLG---------------------LSE-LKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCCCCHHHHHHHhC---------------------ccc-cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            9975431111211110                     000 0011246999999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1e-16  Score=165.77  Aligned_cols=204  Identities=18%  Similarity=0.300  Sum_probs=123.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .-+.++|+|+|+..+|||-||..|.+..+..+..+.|-+... .+.+|..   .|+...   ..+..             
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIg-At~fp~~---ni~e~t---k~~~~-------------  531 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIG-ATYFPAE---NIREKT---KELKK-------------  531 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeecc-ccccchH---HHHHHH---HHHHh-------------
Confidence            446789999999999999999999999877665544433221 1111111   011111   01111             


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                  -.....+-+.+++|||||+..|.+.+..+.        .+||++|+|||..+|+.+++     ...+.
T Consensus       532 ------------~~K~~~kvPg~lvIdtpghEsFtnlRsrgs--------slC~~aIlvvdImhGlepqt-----iESi~  586 (1064)
T KOG1144|consen  532 ------------DAKKRLKVPGLLVIDTPGHESFTNLRSRGS--------SLCDLAILVVDIMHGLEPQT-----IESIN  586 (1064)
T ss_pred             ------------hhhhhcCCCeeEEecCCCchhhhhhhhccc--------cccceEEEEeehhccCCcch-----hHHHH
Confidence                        111113457899999999988743333333        67999999999999999998     45667


Q ss_pred             HHhhccCCeEEEEecCCCCChHhH---HHHHHHHHHHHHHhcccc-chhhhHH---HHhhhhHhhhhc------CCceEE
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFA---LEWMQDFEVFQAAISSDH-SYTSTLT---NSLSLALDEFYK------NLKSVG  292 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~~~~---~~~~~~l~~~~~------~~~vv~  292 (426)
                      +++..+.|+||++||+|+......   ..+...+..-........ .....+.   +.+++...-||.      ++.+||
T Consensus       587 lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVP  666 (1064)
T KOG1144|consen  587 LLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVP  666 (1064)
T ss_pred             HHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeee
Confidence            788999999999999998753211   011111111000000000 0000110   112222222332      468999


Q ss_pred             eecccCCCHHHHHHHHHHHHHH
Q 014354          293 VSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       293 vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +||.+|+||.+|+-+|....+.
T Consensus       667 TSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  667 TSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             cccccCCCcHHHHHHHHHHHHH
Confidence            9999999999999999877555

>cd04157 Arl6 Arl6 subfamily

Probab=99.70  E-value=1.1e-16  Score=141.65  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=67.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH--HHhhccCCeEEEEecC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS--ILYKTRLPLVLAFNKT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~--~l~~~~~P~IlVlNKi  241 (426)
                      .+..+.||||||+.++.       .+...+ ...++++++|+|+....+..........+..  .+...++|++||+||+
T Consensus        43 ~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~  114 (162)
T cd04157          43 GNLSFTAFDMSGQGKYR-------GLWEHY-YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKM  114 (162)
T ss_pred             CCEEEEEEECCCCHhhH-------HHHHHH-HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCc
Confidence            34678999999997642       111111 1357999999999764422110000011111  0112479999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      |+.......++...+.    .               ..   ......+++++||++|.|+++++++|.+
T Consensus       115 Dl~~~~~~~~~~~~l~----~---------------~~---~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         115 DLPDALTAVKITQLLG----L---------------EN---IKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             cccCCCCHHHHHHHhC----C---------------cc---ccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            9976432111111110    0               00   0011235899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.70  E-value=1.6e-16  Score=140.96  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|||||||++++++..+.....       |.+........+.                       .     . 
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~-------~t~~~~~~~~~~~-----------------------~-----~-   45 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYL-------PTIGIDYGVKKVS-----------------------V-----R-   45 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCC-------CccceeEEEEEEE-----------------------E-----C-
Confidence            68999999999999999999887542111       1110000000000                       0     0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~  229 (426)
                                  .....+.||||||+..+.       .+...+ ...++++|+|+|.+...+.... ...+. +......
T Consensus        46 ------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~D~~~~~s~~~~-~~~~~~~~~~~~~  104 (168)
T cd04119          46 ------------NKEVRVNFFDLSGHPEYL-------EVRNEF-YKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGP  104 (168)
T ss_pred             ------------CeEEEEEEEECCccHHHH-------HHHHHH-hccCCEEEEEEECCCHHHHHhH-HHHHHHHHHhccc
Confidence                        123678999999986541       122111 1347999999998764321111 00011 1111111


Q ss_pred             ----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          230 ----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       230 ----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                          .+.|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.+++
T Consensus       105 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119         105 HGNMENIVVVVCANKIDLTKHRAVS--EDEGRLWAE---------------------S--KGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             cccCCCceEEEEEEchhcccccccC--HHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHHHH
Confidence                468999999999997422110  001110000                     1  12568999999999999999


Q ss_pred             HHHHHHH
Q 014354          306 KAVEESA  312 (426)
Q Consensus       306 ~~l~~~~  312 (426)
                      ++|.+.+
T Consensus       160 ~~l~~~l  166 (168)
T cd04119         160 QTLFSSI  166 (168)
T ss_pred             HHHHHHH
Confidence            9998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.69  E-value=1.3e-16  Score=156.93  Aligned_cols=166  Identities=18%  Similarity=0.209  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++++|.|+.|||||||||+|+....  +.+++|+-++.+-..+.....+.        ..-+.+.-..|||||||++  .
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~--------~~~e~~~El~nGCICCT~r--~   69 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLS--------DTGEEVVELTNGCICCTVR--D   69 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccc--------cCCccEEEeCCceEEEecc--c
Confidence            6899999999999999999999875  77777776664433333100000        0001122345899999976  5


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-------cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-------TFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-------~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      .++.-...+.+ +...+++++|+|.|+.+|.       .+...+..       ...|.+|.|||+.+.........    
T Consensus        70 dl~~~~~~L~~-~~~~~D~ivIEtTGlA~P~-------pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~----  137 (323)
T COG0523          70 DLLPALERLLR-RRDRPDRLVIETTGLADPA-------PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA----  137 (323)
T ss_pred             hhHHHHHHHHh-ccCCCCEEEEeCCCCCCCH-------HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH----
Confidence            56666666666 5667999999999999982       22222211       23578999999987665432111    


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ  260 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~  260 (426)
                       --...|..+..+||+||+|+++...+..+...++.++
T Consensus       138 -~~~~~Qia~AD~ivlNK~Dlv~~~~l~~l~~~l~~ln  174 (323)
T COG0523         138 -ELAEDQLAFADVIVLNKTDLVDAEELEALEARLRKLN  174 (323)
T ss_pred             -HHHHHHHHhCcEEEEecccCCCHHHHHHHHHHHHHhC
Confidence             1123478899999999999999886555555555443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.69  E-value=5.6e-16  Score=164.46  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=76.6

Q ss_pred             CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      .+.||||||+..+...       .. .....+|++++|+|+..+..++++.     .+..+...++|+++|+||+|+...
T Consensus        72 ~i~~iDTPG~e~f~~~-------~~-~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~vpiIvviNK~D~~~~  138 (586)
T PRK04004         72 GLLFIDTPGHEAFTNL-------RK-RGGALADIAILVVDINEGFQPQTIE-----AINILKRRKTPFVVAANKIDRIPG  138 (586)
T ss_pred             CEEEEECCChHHHHHH-------HH-HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCchh
Confidence            4899999999876211       11 1124579999999999987776643     334456678999999999998632


Q ss_pred             HhH--------------HHHHHHHH----HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          247 EFA--------------LEWMQDFE----VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       247 ~~~--------------~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ...              ......+.    .+...+.. ..+.    ..+-..+.+|+...+++++||++|.|+.+|+..+
T Consensus       139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~-~g~~----~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i  213 (586)
T PRK04004        139 WKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSE-LGFS----ADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL  213 (586)
T ss_pred             hhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-cCCC----hhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence            110              00011110    00000000 0000    0000112345667899999999999999999887


Q ss_pred             HHHH
Q 014354          309 EESA  312 (426)
Q Consensus       309 ~~~~  312 (426)
                      ...+
T Consensus       214 ~~~~  217 (586)
T PRK04004        214 AGLA  217 (586)
T ss_pred             HHHH
Confidence            6543

>cd01862 Rab7 Rab7 subfamily

Probab=99.69  E-value=2.4e-16  Score=140.83  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=69.2

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHHHh---hccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILY---KTRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~l~---~~~~P~IlVlNKi  241 (426)
                      ..+.+|||||+..+.      ......+  ..+|++|+|+|+.......... ... .+...+.   ..++|+++|+||+
T Consensus        49 ~~~~~~D~~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (172)
T cd01862          49 VTLQIWDTAGQERFQ------SLGVAFY--RGADCCVLVYDVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKI  119 (172)
T ss_pred             EEEEEEeCCChHHHH------hHHHHHh--cCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECc
Confidence            567899999986541      1111112  3479999999987543211110 000 1111111   2278999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      |+..+...  .......+.                      ..+...+++++||++|.|+.++++++.+.+.+.
T Consensus       120 Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         120 DLEEKRQV--STKKAQQWC----------------------QSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             cccccccc--CHHHHHHHH----------------------HHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            99843211  011111111                      112346799999999999999999998876553

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG2262 HflX GTPases [General function prediction only]

Probab=99.69  E-value=4.4e-16  Score=153.78  Aligned_cols=165  Identities=22%  Similarity=0.277  Sum_probs=110.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...+.|+++|+.|||||||+|+|++....             +...-|+|                  |+|..-.+.   
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-------------~~d~LFAT------------------LdpttR~~~---  235 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVY-------------VADQLFAT------------------LDPTTRRIE---  235 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCee-------------cccccccc------------------ccCceeEEE---
Confidence            35679999999999999999999977533             22222232                  000000000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-----cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-----~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                     +..+..+++-||-|+++..     ...+.+.|++     ..+|+++.|||+++. ..........
T Consensus       236 ---------------l~~g~~vlLtDTVGFI~~L-----P~~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~  294 (411)
T COG2262         236 ---------------LGDGRKVLLTDTVGFIRDL-----PHPLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVE  294 (411)
T ss_pred             ---------------eCCCceEEEecCccCcccC-----ChHHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHH
Confidence                           1235789999999997753     3456666655     348999999999876 3333333334


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      .++..+...++|+|+|+||+|++.....   ...+.                          .+. ...|++||++|.|+
T Consensus       295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~--------------------------~~~-~~~v~iSA~~~~gl  344 (411)
T COG2262         295 DVLAEIGADEIPIILVLNKIDLLEDEEI---LAELE--------------------------RGS-PNPVFISAKTGEGL  344 (411)
T ss_pred             HHHHHcCCCCCCEEEEEecccccCchhh---hhhhh--------------------------hcC-CCeEEEEeccCcCH
Confidence            4444444567899999999999877641   11111                          011 15999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQEFM  316 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~  316 (426)
                      +.|+..|...++...
T Consensus       345 ~~L~~~i~~~l~~~~  359 (411)
T COG2262         345 DLLRERIIELLSGLR  359 (411)
T ss_pred             HHHHHHHHHHhhhcc
Confidence            999999999888643

>cd01864 Rab19 Rab19 subfamily

Probab=99.69  E-value=2.4e-16  Score=140.58  Aligned_cols=113  Identities=16%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+..+.       .+...+ ...+|++++|+|+....+... ....+..+......++|+|+|+||+|+..
T Consensus        52 ~~l~i~D~~G~~~~~-------~~~~~~-~~~~d~~llv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~  122 (165)
T cd01864          52 VKLQIWDTAGQERFR-------TITQSY-YRSANGAIIAYDITRRSSFES-VPHWIEEVEKYGASNVVLLLIGNKCDLEE  122 (165)
T ss_pred             EEEEEEECCChHHHH-------HHHHHH-hccCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            578999999986541       112111 134799999999976432211 11111111112234789999999999976


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ....  .......+.                      ..+....++++||++|.|++++++.+.+.
T Consensus       123 ~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         123 QREV--LFEEACTLA----------------------EKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cccc--CHHHHHHHH----------------------HHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            4321  001111111                      11233468999999999999999998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.69  E-value=2.9e-16  Score=145.16  Aligned_cols=118  Identities=16%  Similarity=0.078  Sum_probs=69.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCch--hhhhhHH-HHHHHHhhccCCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM--TFMSNML-YACSILYKTRLPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~--~~~~~~l-~~~~~l~~~~~P~IlVlNKiD  242 (426)
                      ..+.||||||+..+.       .+...+ -..++++|+|+|.....+-.  ..|...+ .........++|+|||+||+|
T Consensus        50 ~~l~l~Dt~G~~~~~-------~~~~~~-~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D  121 (201)
T cd04107          50 VRLQLWDIAGQERFG-------GMTRVY-YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD  121 (201)
T ss_pred             EEEEEEECCCchhhh-------hhHHHH-hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence            578999999996641       122221 13579999999986532211  1111111 000111135789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      +......  ....+..+.                      ..++..+++++||++|.|+.+++.+|.+.+...
T Consensus       122 l~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         122 LKKRLAK--DGEQMDQFC----------------------KENGFIGWFETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             ccccccc--CHHHHHHHH----------------------HHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9742211  011111111                      112335799999999999999999999877654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.69  E-value=1.4e-16  Score=141.90  Aligned_cols=113  Identities=17%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKi  241 (426)
                      ...+.||||||+.++.      ......+  ..+|++|||+|+....+   +......+...+.   ..+.|++||+||+
T Consensus        43 ~~~~~l~D~~G~~~~~------~~~~~~~--~~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~  111 (159)
T cd04150          43 NISFTVWDVGGQDKIR------PLWRHYF--QNTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQ  111 (159)
T ss_pred             CEEEEEEECCCCHhHH------HHHHHHh--cCCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECC
Confidence            4678999999996641      1111122  34799999999975322   1111111112222   1358999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      |+.......++...+. +..                     -......++++||++|.|+++++++|..
T Consensus       112 Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         112 DLPNAMSAAEVTDKLG-LHS---------------------LRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCCCHHHHHHHhC-ccc---------------------cCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            9965322111211110 000                     0011235789999999999999999853

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.69  E-value=2.2e-16  Score=141.78  Aligned_cols=123  Identities=17%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++..       +... ....+|++|+|+|..+..   .|......+...+.  ..++|+|||+||+|+
T Consensus        46 ~~~~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl  114 (174)
T smart00174       46 VELGLWDTAGQEDYDR-------LRPL-SYPDTDVFLICFSVDSPA---SFENVKEKWYPEVKHFCPNTPIILVGTKLDL  114 (174)
T ss_pred             EEEEEEECCCCcccch-------hchh-hcCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence            5789999999976521       1111 113579999999986532   22211111222222  247999999999998


Q ss_pred             CChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          244 AQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       244 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      ...... ..+...             ....+....+..+....+..+++++||++|.|+.+++..+.+.+
T Consensus       115 ~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      115 REDKSTLRELSKQ-------------KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             hhChhhhhhhhcc-------------cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            764321 111000             00001111111122223334799999999999999999988764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.69  E-value=2.6e-16  Score=171.36  Aligned_cols=162  Identities=24%  Similarity=0.311  Sum_probs=106.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|.||||||||+|+|++....             +.+.|++| +   +..              .|.+.     
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------vgn~pGvT-v---e~k--------------~g~~~-----   46 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-------------VGNWAGVT-V---ERK--------------EGQFS-----   46 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCce-E---eeE--------------EEEEE-----
Confidence            457999999999999999999987532             34445444 1   110              11111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hchHHHH-HHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~~~~~l-~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                    .++.++.+|||||+.++...   ......+ ...+....+|++++|+|+++....       ++..
T Consensus        47 --------------~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~-------l~l~  105 (772)
T PRK09554         47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN-------LYLT  105 (772)
T ss_pred             --------------cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh-------HHHH
Confidence                          24568999999999876321   1222222 233344568999999999764322       2233


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+.+.++|+|+|+||+|+.+.....   .+.+.+...                      . ..+++++||++|+|++++
T Consensus       106 ~ql~e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~----------------------L-G~pVvpiSA~~g~GIdeL  159 (772)
T PRK09554        106 LQLLELGIPCIVALNMLDIAEKQNIR---IDIDALSAR----------------------L-GCPVIPLVSTRGRGIEAL  159 (772)
T ss_pred             HHHHHcCCCEEEEEEchhhhhccCcH---HHHHHHHHH----------------------h-CCCEEEEEeecCCCHHHH
Confidence            44567789999999999987543221   122222111                      1 358999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          305 FKAVEESAQ  313 (426)
Q Consensus       305 ~~~l~~~~~  313 (426)
                      ++.+.....
T Consensus       160 ~~~I~~~~~  168 (772)
T PRK09554        160 KLAIDRHQA  168 (772)
T ss_pred             HHHHHHhhh
Confidence            999987654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=3e-16  Score=170.97  Aligned_cols=163  Identities=23%  Similarity=0.276  Sum_probs=105.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+|+|.||||||||+|+|++....      +      +...|+.|    ++.+.              +.+.   
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~------i------v~~~pGvT----~d~~~--------------~~~~---  319 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREA------V------VEDTPGVT----RDRVS--------------YDAE---  319 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCce------e------ecCCCCee----EEEEE--------------EEEE---
Confidence            34578999999999999999999986532      2      33334333    22110              0010   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                      ..+..+.||||||+....  ......+....  ....+|++|+|+|+..++...+     ..+.
T Consensus       320 ----------------~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-----~~i~  376 (712)
T PRK09518        320 ----------------WAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-----ERIV  376 (712)
T ss_pred             ----------------ECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHH
Confidence                            234678999999986421  11222222222  1245899999999988776544     2234


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...++|+|+|+||+|+.....   ....+.                          ..+...++++||++|.||.+|
T Consensus       377 ~~Lr~~~~pvIlV~NK~D~~~~~~---~~~~~~--------------------------~lg~~~~~~iSA~~g~GI~eL  427 (712)
T PRK09518        377 RMLRRAGKPVVLAVNKIDDQASEY---DAAEFW--------------------------KLGLGEPYPISAMHGRGVGDL  427 (712)
T ss_pred             HHHHhcCCCEEEEEECcccccchh---hHHHHH--------------------------HcCCCCeEEEECCCCCCchHH
Confidence            556678999999999999865321   111110                          012235789999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|...++.
T Consensus       428 l~~i~~~l~~  437 (712)
T PRK09518        428 LDEALDSLKV  437 (712)
T ss_pred             HHHHHHhccc
Confidence            9999988755

>cd04140 ARHI_like ARHI subfamily

Probab=99.68  E-value=3.7e-16  Score=139.53  Aligned_cols=159  Identities=15%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+.....       |..   +...    +.                 -+.+.     
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-------~t~---~~~~----~~-----------------~~~~~-----   45 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-------PTI---EDTY----RQ-----------------VISCS-----   45 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcC-------Ccc---hheE----EE-----------------EEEEC-----
Confidence            479999999999999999999876432110       000   0000    00                 00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                   .....+.||||||+.++.       .+... ....++++|+|.|.....+... .......+..+. 
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~-~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~  103 (165)
T cd04140          46 -------------KNICTLQITDTTGSHQFP-------AMQRL-SISKGHAFILVYSVTSKQSLEE-LKPIYELICEIKG  103 (165)
T ss_pred             -------------CEEEEEEEEECCCCCcch-------HHHHH-HhhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhc
Confidence                         123578899999997752       11111 1134688999999865432211 111111122221 


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ..++|++||+||+|+.........  ....+                  +    . ....+++++||++|.|+.++++
T Consensus       104 ~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~------------------~----~-~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140         104 NNIEKIPIMLVGNKCDESHKREVSSN--EGAAC------------------A----T-EWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             CCCCCCCEEEEEECccccccCeecHH--HHHHH------------------H----H-HhCCcEEEeecCCCCCHHHHHH
Confidence              146899999999999763321100  00000                  0    0 1135689999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      +|...
T Consensus       159 ~l~~~  163 (165)
T cd04140         159 ELLNL  163 (165)
T ss_pred             HHHhc
Confidence            98753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04135 Tc10 TC10 subfamily

Probab=99.68  E-value=3.1e-16  Score=140.83  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      +.+.||||||+..+...       .. .....++++++|+|.....+   |......+...+.  ..++|+++|+||+|+
T Consensus        48 ~~~~i~Dt~G~~~~~~~-------~~-~~~~~~~~~ilv~~~~~~~s---~~~~~~~~~~~l~~~~~~~piivv~nK~Dl  116 (174)
T cd04135          48 YLLGLYDTAGQEDYDRL-------RP-LSYPMTDVFLICFSVVNPAS---FQNVKEEWVPELKEYAPNVPYLLVGTQIDL  116 (174)
T ss_pred             EEEEEEeCCCccccccc-------cc-ccCCCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCEEEEeEchhh
Confidence            56789999998775211       11 11134689999999865432   2111111122222  457999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      .......   ..+..+..         ..+....+..+...++..+++++||++|.|+.+++..+...+
T Consensus       117 ~~~~~~~---~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         117 RDDPKTL---ARLNDMKE---------KPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hcChhhH---HHHhhccC---------CCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            6543211   11110000         001111111111223445699999999999999999887653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.68  E-value=1.7e-16  Score=144.82  Aligned_cols=165  Identities=19%  Similarity=0.218  Sum_probs=94.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+++|.+|||||||++++.+..+...        .|...     .+                     -+.+.    
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~--------~~t~~-----~~---------------------~~~~~----   57 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH--------QPTQH-----PT---------------------SEELA----   57 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCccc--------CCccc-----cc---------------------eEEEE----
Confidence            457899999999999999999998653210        01000     00                     00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+.++.+|||||+..+.      ......+  ..++++++|+|++...   .+.........++
T Consensus        58 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~ad~ii~vvD~~~~~---~~~~~~~~l~~l~  111 (184)
T smart00178       58 ---------------IGNIKFTTFDLGGHQQAR------RLWKDYF--PEVNGIVYLVDAYDKE---RFAESKRELDALL  111 (184)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECCcHH---HHHHHHHHHHHHH
Confidence                           134688999999986541      1111122  3579999999996532   1111111111222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|++||+||+|+...-...++.+.+. +..           ...+.+.   .......++++||++|+|+.++
T Consensus       112 ~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~-l~~-----------~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~~  176 (184)
T smart00178      112 SDEELATVPFLILGNKIDAPYAASEDELRYALG-LTN-----------TTGSKGK---VGVRPLEVFMCSVVRRMGYGEG  176 (184)
T ss_pred             cChhhcCCCEEEEEeCccccCCCCHHHHHHHcC-CCc-----------ccccccc---cCCceeEEEEeecccCCChHHH
Confidence            1   25789999999999864322222222221 000           0000000   0113456999999999999999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      +++|...
T Consensus       177 ~~wl~~~  183 (184)
T smart00178      177 FKWLSQY  183 (184)
T ss_pred             HHHHHhh
Confidence            9999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.68  E-value=2.5e-16  Score=139.21  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +..+.||||||+..+.       .+...+ ...++++++|+|+...............+.......+.|+++|+||+|+.
T Consensus        42 ~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~  113 (158)
T cd00878          42 NVSFTVWDVGGQDKIR-------PLWKHY-YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP  113 (158)
T ss_pred             CEEEEEEECCCChhhH-------HHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence            4689999999987641       111111 13469999999997642211111111111111123578999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ......+..+.+..                     .. ......+++++||++|.|+.+++++|..
T Consensus       114 ~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         114 GALSVSELIEKLGL---------------------EK-ILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             cccCHHHHHHhhCh---------------------hh-ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            75422222221110                     00 0123467999999999999999998864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.68  E-value=3.9e-16  Score=141.31  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||+++++...+.....+       .+.. .+..                       .+..      
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p-------t~~~-~~~~-----------------------~~~~------   44 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-------TVFD-NYAV-----------------------TVMI------   44 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------ceee-eeEE-----------------------EEEE------
Confidence            5799999999999999999998765322111       1100 0000                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ....+.+.||||||+.++.       .+...+ -..++++|+|+|.....+-...   ...+...+. 
T Consensus        45 ------------~~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~a~~~ilv~d~~~~~s~~~~---~~~w~~~i~~  101 (175)
T cd01874          45 ------------GGEPYTLGLFDTAGQEDYD-------RLRPLS-YPQTDVFLVCFSVVSPSSFENV---KEKWVPEITH  101 (175)
T ss_pred             ------------CCEEEEEEEEECCCccchh-------hhhhhh-cccCCEEEEEEECCCHHHHHHH---HHHHHHHHHH
Confidence                        0123678899999997752       111111 1347999999998654322111   001112222 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|+|||+||+|+......   .+.+..   .      ..+.+....+..+...++...++++||++|.|+.++|+.
T Consensus       102 ~~~~~piilvgnK~Dl~~~~~~---~~~l~~---~------~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~  169 (175)
T cd01874         102 HCPKTPFLLVGTQIDLRDDPST---IEKLAK---N------KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE  169 (175)
T ss_pred             hCCCCCEEEEEECHhhhhChhh---HHHhhh---c------cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHH
Confidence             236899999999998654321   111110   0      000111111221112233467999999999999999998


Q ss_pred             HHHH
Q 014354          308 VEES  311 (426)
Q Consensus       308 l~~~  311 (426)
                      +...
T Consensus       170 ~~~~  173 (175)
T cd01874         170 AILA  173 (175)
T ss_pred             HHHH
Confidence            8764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03118 Rab family protein; Provisional

Probab=99.68  E-value=8.7e-16  Score=143.15  Aligned_cols=172  Identities=14%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .....+|+|+|.+|||||||+++|++..+...        .|...     ....+.                  .+..  
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~--------~~t~~-----~~~~~~------------------~~~~--   57 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDL--------APTIG-----VDFKIK------------------QLTV--   57 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCc--------CCCce-----eEEEEE------------------EEEE--
Confidence            34567899999999999999999998653210        01000     000000                  0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                         .             .....+.||||||+.++.       .+...+ ...++++|+|+|.....+...........+.
T Consensus        58 ---~-------------~~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~  113 (211)
T PLN03118         58 ---G-------------GKRLKLTIWDTAGQERFR-------TLTSSY-YRNAQGIILVYDVTRRETFTNLSDVWGKEVE  113 (211)
T ss_pred             ---C-------------CEEEEEEEEECCCchhhH-------HHHHHH-HhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence               0             123578999999997752       111111 1346999999999753322111000011111


Q ss_pred             HH-hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       226 ~l-~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .. ...+.|.|||+||+|+.......  ......+.                      .. ...+++++||++|.|++++
T Consensus       114 ~~~~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~----------------------~~-~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118        114 LYSTNQDCVKMLVGNKVDRESERDVS--REEGMALA----------------------KE-HGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             HhcCCCCCCEEEEEECccccccCccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHH
Confidence            11 12467999999999997543211  00111000                      00 1256899999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 014354          305 FKAVEESAQEFMETY  319 (426)
Q Consensus       305 ~~~l~~~~~~~~~~~  319 (426)
                      +.+|...+...+..+
T Consensus       169 ~~~l~~~~~~~~~~~  183 (211)
T PLN03118        169 FEELALKIMEVPSLL  183 (211)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999887755443

>cd04134 Rho3 Rho3 subfamily

Probab=99.68  E-value=3.3e-16  Score=143.47  Aligned_cols=171  Identities=18%  Similarity=0.198  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||++++++..+.....       |.+.. .+..                       .+...      
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~-------~t~~~-~~~~-----------------------~i~~~------   44 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE-------PTVFE-NYVH-----------------------DIFVD------   44 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccC-------Cccee-eeEE-----------------------EEEEC------
Confidence            68999999999999999999876543111       11100 0000                       00000      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                  .....+.||||||+.++..       +... .-..++++++|.|.....+-..   ....++..+.  
T Consensus        45 ------------~~~~~l~i~Dt~G~~~~~~-------l~~~-~~~~a~~~ilv~dv~~~~sf~~---~~~~~~~~i~~~  101 (189)
T cd04134          45 ------------GLHIELSLWDTAGQEEFDR-------LRSL-SYADTDVIMLCFSVDSPDSLEN---VESKWLGEIREH  101 (189)
T ss_pred             ------------CEEEEEEEEECCCChhccc-------cccc-cccCCCEEEEEEECCCHHHHHH---HHHHHHHHHHHh
Confidence                        1236789999999976521       1111 1134688888877654322111   1011112222  


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..+.|+|||+||+|+..............       .     ..+....+..+.......+++++||++|.|+.++|.+|
T Consensus       102 ~~~~piilvgNK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l  169 (189)
T cd04134         102 CPGVKLVLVALKCDLREARNERDDLQRYG-------K-----HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEA  169 (189)
T ss_pred             CCCCCEEEEEEChhhccChhhHHHHhhcc-------C-----CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHH
Confidence            23789999999999976543221111000       0     00001111111122334679999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.+.
T Consensus       170 ~~~~~  174 (189)
T cd04134         170 ARVAL  174 (189)
T ss_pred             HHHHh
Confidence            87665

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=4.8e-16  Score=160.48  Aligned_cols=156  Identities=26%  Similarity=0.268  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.||||||||+|+|++.....            +...|+++    ++..              .+.+.      
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------v~~~~~~t----~d~~--------------~~~~~------   45 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------VADTPGVT----RDRI--------------YGEAE------   45 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee------------eCCCCCCc----ccce--------------EEEEE------
Confidence            579999999999999999999876321            22333332    1111              01111      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   ..+..+.||||||+.... . .....+....  ....+|++|+|+|+..+....+.     .+...+
T Consensus        46 -------------~~~~~~~liDT~G~~~~~-~-~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~-----~~~~~l  105 (435)
T PRK00093         46 -------------WLGREFILIDTGGIEPDD-D-GFEKQIREQAELAIEEADVILFVVDGRAGLTPADE-----EIAKIL  105 (435)
T ss_pred             -------------ECCcEEEEEECCCCCCcc-h-hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHH
Confidence                         234689999999997621 1 1111222211  12458999999999887665442     233445


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+.....   ....+.                          ..++..++++||++|.|+.++++.
T Consensus       106 ~~~~~piilv~NK~D~~~~~~---~~~~~~--------------------------~lg~~~~~~iSa~~g~gv~~l~~~  156 (435)
T PRK00093        106 RKSNKPVILVVNKVDGPDEEA---DAYEFY--------------------------SLGLGEPYPISAEHGRGIGDLLDA  156 (435)
T ss_pred             HHcCCcEEEEEECccCccchh---hHHHHH--------------------------hcCCCCCEEEEeeCCCCHHHHHHH
Confidence            667899999999999765221   111110                          012335899999999999999999


Q ss_pred             HHH
Q 014354          308 VEE  310 (426)
Q Consensus       308 l~~  310 (426)
                      +..
T Consensus       157 I~~  159 (435)
T PRK00093        157 ILE  159 (435)
T ss_pred             HHh
Confidence            987

>cd04142 RRP22 RRP22 subfamily

Probab=99.68  E-value=6e-16  Score=143.09  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||++++++..+....             .| ++..+...                ..+..     . 
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-------------~p-t~~~~~~~----------------~~i~~-----~-   45 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-------------IP-TEHRRLYR----------------PAVVL-----S-   45 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCccc-------------CC-ccccccce----------------eEEEE-----C-
Confidence            6899999999999999999987654311             11 11000000                00000     0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH--HHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHH
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA--FASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSIL  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~--~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l  227 (426)
                                  ...+.+.||||||+..+.  ...+......  ..-..+|++|+|+|+....+-.. ...... +....
T Consensus        46 ------------~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~-~~~~~~~i~~~~  110 (198)
T cd04142          46 ------------GRVYDLHILDVPNMQRYP--GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHY-VKLLRQQILETR  110 (198)
T ss_pred             ------------CEEEEEEEEeCCCcccCC--ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence                        122578899999986542  1111111111  11245899999999975332211 111111 11111


Q ss_pred             --hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 --YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 --~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                        ...++|+|||+||+|+.......  .+....+..                     . ....+++++||++|.|+.++|
T Consensus       111 ~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~---------------------~-~~~~~~~e~Sak~g~~v~~lf  166 (198)
T cd04142         111 PAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVR---------------------K-SWKCGYLECSAKYNWHILLLF  166 (198)
T ss_pred             ccCCCCCCEEEEEECcccccccccc--HHHHHHHHH---------------------H-hcCCcEEEecCCCCCCHHHHH
Confidence              13568999999999996543111  111111100                     0 124679999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      +.+.......
T Consensus       167 ~~i~~~~~~~  176 (198)
T cd04142         167 KELLISATTR  176 (198)
T ss_pred             HHHHHHhhcc
Confidence            9998765543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04124 RabL2 RabL2 subfamily

Probab=99.68  E-value=6.1e-16  Score=137.74  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD  242 (426)
                      ...+.||||||+..+.       .+...+ -..+|++++|+|+....+...    ...++..+.+  .++|+++|+||+|
T Consensus        48 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~----~~~~~~~i~~~~~~~p~ivv~nK~D  115 (161)
T cd04124          48 TILVDFWDTAGQERFQ-------TMHASY-YHKAHACILVFDVTRKITYKN----LSKWYEELREYRPEIPCIVVANKID  115 (161)
T ss_pred             EEEEEEEeCCCchhhh-------hhhHHH-hCCCCEEEEEEECCCHHHHHH----HHHHHHHHHHhCCCCcEEEEEECcc
Confidence            3678899999987652       111111 135799999999865432211    1122222332  3789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      +....     ......+.                      .. ...+++++||++|.|+.++++.+.+.+.++
T Consensus       116 l~~~~-----~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         116 LDPSV-----TQKKFNFA----------------------EK-HNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CchhH-----HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            85321     01111000                      11 135799999999999999999998776653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.68  E-value=8.3e-16  Score=133.61  Aligned_cols=104  Identities=17%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             EEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh
Q 014354          169 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF  248 (426)
Q Consensus       169 ~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~  248 (426)
                      .+|||||+...  +...-..+...  ...+|++++|+|+....+....     .+..   ....|+|+|+||+|+.....
T Consensus        38 ~~iDt~G~~~~--~~~~~~~~~~~--~~~ad~vilv~d~~~~~s~~~~-----~~~~---~~~~p~ilv~NK~Dl~~~~~  105 (142)
T TIGR02528        38 GAIDTPGEYVE--NRRLYSALIVT--AADADVIALVQSATDPESRFPP-----GFAS---IFVKPVIGLVTKIDLAEADV  105 (142)
T ss_pred             eeecCchhhhh--hHHHHHHHHHH--hhcCCEEEEEecCCCCCcCCCh-----hHHH---hccCCeEEEEEeeccCCccc
Confidence            58999998321  11111112122  2457999999999876654221     1111   12359999999999875321


Q ss_pred             HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          249 ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       249 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ..   +....+.                      ......+++++||++|.|+++++++|.
T Consensus       106 ~~---~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       106 DI---ERAKELL----------------------ETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CH---HHHHHHH----------------------HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            11   1111110                      011234799999999999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04176 Rap2 Rap2 subgroup

Probab=99.68  E-value=3e-16  Score=139.39  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi  241 (426)
                      ..+.||||||+.++..       +...+ ...+|++++|+|.....+   |.. ...+...+.    ..++|++||+||+
T Consensus        49 ~~l~i~Dt~G~~~~~~-------~~~~~-~~~ad~~i~v~d~~~~~s---~~~-~~~~~~~~~~~~~~~~~piviv~nK~  116 (163)
T cd04176          49 SVLEILDTAGTEQFAS-------MRDLY-IKNGQGFIVVYSLVNQQT---FQD-IKPMRDQIVRVKGYEKVPIILVGNKV  116 (163)
T ss_pred             EEEEEEECCCcccccc-------hHHHH-HhhCCEEEEEEECCCHHH---HHH-HHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            4678999999877521       11111 124689999999865322   111 111111121    2579999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      |+........  .....+.                      ..+ ..+++++||++|.|+.+++.++.+.
T Consensus       117 Dl~~~~~~~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         117 DLESEREVSS--AEGRALA----------------------EEW-GCPFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             cchhcCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHHHHHh
Confidence            9865321110  0011110                      111 2578999999999999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.68  E-value=8.6e-16  Score=143.07  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=71.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      ++.++.||||||+.++.      ..+...  ...+|++|+|+|+..+......     .....+...+.| +|+|+||+|
T Consensus        75 ~~~~~~liDTpG~~~~~------~~~~~~--~~~ad~~llVvD~~~~~~~~~~-----~~~~~~~~~~~~~iIvviNK~D  141 (208)
T cd04166          75 PKRKFIIADTPGHEQYT------RNMVTG--ASTADLAILLVDARKGVLEQTR-----RHSYILSLLGIRHVVVAVNKMD  141 (208)
T ss_pred             CCceEEEEECCcHHHHH------HHHHHh--hhhCCEEEEEEECCCCccHhHH-----HHHHHHHHcCCCcEEEEEEchh
Confidence            45789999999986641      112222  2457999999999887654432     122233444544 677899999


Q ss_pred             CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354          243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK  320 (426)
Q Consensus       243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~  320 (426)
                      +....  ....+...+..+...              +     . +...++|++||++|.|+.+..       +..+||+.
T Consensus       142 ~~~~~~~~~~~i~~~~~~~~~~--------------~-----~-~~~~~ii~iSA~~g~ni~~~~-------~~~~w~~g  194 (208)
T cd04166         142 LVDYSEEVFEEIVADYLAFAAK--------------L-----G-IEDITFIPISALDGDNVVSRS-------ENMPWYSG  194 (208)
T ss_pred             cccCCHHHHHHHHHHHHHHHHH--------------c-----C-CCCceEEEEeCCCCCCCccCC-------CCCCCCCC
Confidence            97532  112222222222111              0     0 123569999999999998542       34667665


Q ss_pred             hHH
Q 014354          321 ADL  323 (426)
Q Consensus       321 ~~~  323 (426)
                      +-+
T Consensus       195 ~~~  197 (208)
T cd04166         195 PTL  197 (208)
T ss_pred             CcH
Confidence            433

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.68  E-value=4.7e-16  Score=137.58  Aligned_cols=117  Identities=21%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +..+.+|||||+..+.      ......+  ..++++|+|+|+.+.............++......++|+++|+||+|+.
T Consensus        43 ~~~l~i~D~~G~~~~~------~~~~~~~--~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (160)
T cd04156          43 HLSLTVWDVGGQEKMR------TVWKCYL--ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP  114 (160)
T ss_pred             ceEEEEEECCCCHhHH------HHHHHHh--ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence            3678999999986541      1111112  3479999999997643211111111111111112579999999999986


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ......++...+. +..                   + ......+++++||++|+|+++++++|.+
T Consensus       115 ~~~~~~~i~~~~~-~~~-------------------~-~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         115 GALTAEEITRRFK-LKK-------------------Y-CSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cCcCHHHHHHHcC-Ccc-------------------c-CCCCcEEEEecccccCCChHHHHHHHhc
Confidence            4321111211110 000                   0 0011246899999999999999998853

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.67  E-value=5.1e-16  Score=141.43  Aligned_cols=167  Identities=17%  Similarity=0.090  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||++++++..+.......+.        ..+...                       +..     . 
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~--------~~~~~~-----------------------i~~-----~-   44 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVF--------ENYVTN-----------------------IQG-----P-   44 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeee--------eeeEEE-----------------------EEe-----c-
Confidence            689999999999999999998765432111100        000000                       000     0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                 ......+.||||||+.++.       .+.. .....+|++++|+|.....+....   ...+...+.  
T Consensus        45 -----------~~~~~~l~i~Dt~G~~~~~-------~~~~-~~~~~ad~ii~v~d~~~~~s~~~~---~~~~~~~~~~~  102 (187)
T cd04132          45 -----------NGKIIELALWDTAGQEEYD-------RLRP-LSYPDVDVLLICYAVDNPTSLDNV---EDKWFPEVNHF  102 (187)
T ss_pred             -----------CCcEEEEEEEECCCchhHH-------HHHH-HhCCCCCEEEEEEECCCHHHHHHH---HHHHHHHHHHh
Confidence                       0123578999999987642       1111 112457999999998754322111   111111111  


Q ss_pred             hccCCeEEEEecCCCCChHhHHHH--HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ..++|+|||+||+|+.........  ......+.                      ..+...+++++||++|.|+.+++.
T Consensus       103 ~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~f~  160 (187)
T cd04132         103 CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA----------------------KKQGAFAYLECSAKTMENVEEVFD  160 (187)
T ss_pred             CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----------------------HHcCCcEEEEccCCCCCCHHHHHH
Confidence            247899999999998753210000  00111000                      112223789999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 014354          307 AVEESAQEFMET  318 (426)
Q Consensus       307 ~l~~~~~~~~~~  318 (426)
                      .+...+......
T Consensus       161 ~l~~~~~~~~~~  172 (187)
T cd04132         161 TAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHhhhhh
Confidence            999887765433

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.67  E-value=5.5e-16  Score=140.19  Aligned_cols=116  Identities=18%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.||||||+.++.       .+...+ ...++.+++|+|............-....+......++|+|+|+||+|+..
T Consensus        49 ~~~~l~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          49 YHLEIVDTAGQDEYS-------ILPQKY-SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT  120 (180)
T ss_pred             EEEEEEECCChHhhH-------HHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence            577899999987641       111111 123678888888875432221111011122222235789999999999875


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .....  ......+..                     .+  ..+++++||++|.|+.+++.++.+.+..
T Consensus       121 ~~~~~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         121 QRQVS--TEEGKELAE---------------------SW--GAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             cCccC--HHHHHHHHH---------------------Hc--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            32111  001111100                     11  2578999999999999999999876644

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.67  E-value=3.3e-16  Score=141.66  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK  240 (426)
                      ....+.||||||+..+.       .+...+ -..++++|+|+|++...+   +..........+.   ..+.|++||+||
T Consensus        55 ~~~~l~l~D~~G~~~~~-------~~~~~~-~~~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK  123 (175)
T smart00177       55 KNISFTVWDVGGQDKIR-------PLWRHY-YTNTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANK  123 (175)
T ss_pred             CCEEEEEEECCCChhhH-------HHHHHH-hCCCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence            34688999999986641       122221 134799999999875321   1111111111111   135899999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      +|+.......++...+. +..                     .....+.++++||++|.|+.+++++|...+
T Consensus       124 ~Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      124 QDLPDAMKAAEITEKLG-LHS---------------------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             cCcccCCCHHHHHHHhC-ccc---------------------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99875422112221111 000                     001123477999999999999999997654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR00101 ureG urease accessory protein UreG

Probab=99.67  E-value=8.5e-16  Score=142.10  Aligned_cols=188  Identities=16%  Similarity=0.147  Sum_probs=110.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHH-HHHHH--HHcCCCCCCCccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR-YKEVM--KQFNLGPNGGILTSL  145 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~-~~~~~--~~~~l~~ng~i~~~~  145 (426)
                      +..|+|+|++|||||||++++++..... ..+.++..+....  .     + ..... ..-+.  ....+..++|.||+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~--~-----~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQ--E-----D-AEFLVKNSALPPERILGVETGGCPHTAI   71 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCCh--h-----H-HHHHHHcCCCCcCceehhhcCCCcccee
Confidence            3579999999999999999999875443 3355555443210  0     0 00000 00000  011233567888865


Q ss_pred             ccccccHHHHHHHHHH--HhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          146 NLFTTKFDEVISLIER--RADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~--~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      +  .........+..-  ...+.+++||+|.|..-..       .+    ....++.+|+|+|+.++......       
T Consensus        72 ~--~~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~-------~~----~~~l~~~~i~vvD~~~~~~~~~~-------  131 (199)
T TIGR00101        72 R--EDASMNLEAVAEMEARFPPLEMVFIESGGDNLSA-------TF----SPELADLTIFVIDVAAGDKIPRK-------  131 (199)
T ss_pred             c--cCHHHHHHHHHHHHhcCCCCCEEEEECCCCCccc-------cc----chhhhCcEEEEEEcchhhhhhhh-------
Confidence            4  2222222222211  2246899999999942110       00    01124779999999876542211       


Q ss_pred             HHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                        ...+..++.++|+||+|+.+.  ..+....+.++                         .+.+..+++.+||++|+|+
T Consensus       132 --~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi  184 (199)
T TIGR00101       132 --GGPGITRSDLLVINKIDLAPMVGADLGVMERDAK-------------------------KMRGEKPFIFTNLKTKEGL  184 (199)
T ss_pred             --hHhHhhhccEEEEEhhhccccccccHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCH
Confidence              123556788999999999853  22222233332                         2234578999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          302 EAYFKAVEESA  312 (426)
Q Consensus       302 ~~l~~~l~~~~  312 (426)
                      .+++++|.+++
T Consensus       185 ~el~~~i~~~~  195 (199)
T TIGR00101       185 DTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHhhc
Confidence            99999998653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04155 Arl3 Arl3 subfamily

Probab=99.67  E-value=2.8e-16  Score=140.95  Aligned_cols=160  Identities=19%  Similarity=0.236  Sum_probs=92.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+++|.+.....               ...+..+..                   ..+.    
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---------------~~~t~g~~~-------------------~~i~----   54 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH---------------ITPTQGFNI-------------------KTVQ----   54 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc---------------cCCCCCcce-------------------EEEE----
Confidence            45789999999999999999999864321               000100000                   0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.+|||||+..+.      ......+  ..++++++|+|+....................
T Consensus        55 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~  111 (173)
T cd04155          55 ---------------SDGFKLNVWDIGGQRAIR------PYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEE  111 (173)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence                           124678999999985531      1111112  35789999999975321111010001111112


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+++++||+|+........+...+.                     .. .-.....+++++||++|.|+++++++
T Consensus       112 ~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~---------------------~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~  169 (173)
T cd04155         112 KLAGVPVLVFANKQDLATAAPAEEIAEALN---------------------LH-DLRDRTWHIQACSAKTGEGLQEGMNW  169 (173)
T ss_pred             hhcCCCEEEEEECCCCccCCCHHHHHHHcC---------------------Cc-ccCCCeEEEEEeECCCCCCHHHHHHH
Confidence            235799999999999976543222222111                     00 00011235789999999999999999


Q ss_pred             HHH
Q 014354          308 VEE  310 (426)
Q Consensus       308 l~~  310 (426)
                      |.+
T Consensus       170 l~~  172 (173)
T cd04155         170 VCK  172 (173)
T ss_pred             Hhc
Confidence            864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PTZ00369 Ras-like protein; Provisional

Probab=99.67  E-value=6e-16  Score=141.71  Aligned_cols=163  Identities=14%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|.+|||||||++++.+..+.....       |...       ...+.                 .+...    
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~-------~t~~-------~~~~~-----------------~~~~~----   49 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD-------PTIE-------DSYRK-----------------QCVID----   49 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC-------Cchh-------hEEEE-----------------EEEEC----
Confidence            4689999999999999999999876432110       1000       00000                 00000    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l  227 (426)
                                    .....+.||||||+.++.       .+...+ ...++++++|+|.+...+-... ..... +....
T Consensus        50 --------------~~~~~l~i~Dt~G~~~~~-------~l~~~~-~~~~d~iilv~D~s~~~s~~~~-~~~~~~i~~~~  106 (189)
T PTZ00369         50 --------------EETCLLDILDTAGQEEYS-------AMRDQY-MRTGQGFLCVYSITSRSSFEEI-ASFREQILRVK  106 (189)
T ss_pred             --------------CEEEEEEEEeCCCCccch-------hhHHHH-hhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhc
Confidence                          123567899999998762       122211 1346899999998754321111 11111 11111


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|||+||+|+........  .....+.                      ..+ ..+++.+||++|.|+.+++.+
T Consensus       107 ~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~----------------------~~~-~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369        107 DKDRVPMILVGNKCDLDSERQVST--GEGQELA----------------------KSF-GIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             CCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHHH
Confidence            234789999999999865321110  0000000                      111 257999999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      |.+.+..
T Consensus       162 l~~~l~~  168 (189)
T PTZ00369        162 LVREIRK  168 (189)
T ss_pred             HHHHHHH
Confidence            9887654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.67  E-value=6.6e-16  Score=164.78  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=78.7

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiDl~  244 (426)
                      ..+.||||||+.++.      ..+...+  ..+|++++|||+..+..+++.     ..+..+...++|. |+|+||+|++
T Consensus        51 ~~i~~IDtPGhe~fi------~~m~~g~--~~~D~~lLVVda~eg~~~qT~-----ehl~il~~lgi~~iIVVlNKiDlv  117 (614)
T PRK10512         51 RVLGFIDVPGHEKFL------SNMLAGV--GGIDHALLVVACDDGVMAQTR-----EHLAILQLTGNPMLTVALTKADRV  117 (614)
T ss_pred             cEEEEEECCCHHHHH------HHHHHHh--hcCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEECCccC
Confidence            457899999996641      2222222  457999999999998877663     3344455667785 7899999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +..........+..+...                    ..+.+.++|++||++|.|+++|+++|.....
T Consensus       118 ~~~~~~~v~~ei~~~l~~--------------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        118 DEARIAEVRRQVKAVLRE--------------------YGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence            765443344444322211                    1123478999999999999999999986543

>cd01865 Rab3 Rab3 subfamily

Probab=99.67  E-value=1e-15  Score=136.75  Aligned_cols=159  Identities=14%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+.....       |.+     +..+....                  +..      
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~~------------------~~~------   45 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-------STV-----GIDFKVKT------------------VFR------   45 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Cce-----eeEEEEEE------------------EEE------
Confidence            579999999999999999999876532111       100     00000000                  000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.||||||+.++.       .+...+ ...++++++|+|.....   .+. ....++..+. 
T Consensus        46 ------------~~~~~~~~l~Dt~g~~~~~-------~~~~~~-~~~~~~~l~v~d~~~~~---s~~-~~~~~~~~i~~  101 (165)
T cd01865          46 ------------NDKRVKLQIWDTAGQERYR-------TITTAY-YRGAMGFILMYDITNEE---SFN-AVQDWSTQIKT  101 (165)
T ss_pred             ------------CCEEEEEEEEECCChHHHH-------HHHHHH-ccCCcEEEEEEECCCHH---HHH-HHHHHHHHHHH
Confidence                        0123578999999986642       111111 23579999999986432   111 1112222222 


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ....|+++|+||+|+.......  ......+.                      ... ..+++++||++|.|+.++++
T Consensus       102 ~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865         102 YSWDNAQVILVGNKCDMEDERVVS--SERGRQLA----------------------DQL-GFEFFEASAKENINVKQVFE  156 (165)
T ss_pred             hCCCCCCEEEEEECcccCcccccC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHH
Confidence              2368999999999997643211  01111110                      111 24699999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      ++...+.
T Consensus       157 ~l~~~~~  163 (165)
T cd01865         157 RLVDIIC  163 (165)
T ss_pred             HHHHHHH
Confidence            9987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01893 Miro1 Miro1 subfamily

Probab=99.67  E-value=1.3e-15  Score=136.13  Aligned_cols=162  Identities=19%  Similarity=0.249  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||++++++..+...              .+.+. -...  +              ...+.       
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--------------~~~~~-~~~~--~--------------~~~~~-------   43 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--------------VPRVL-PEIT--I--------------PADVT-------   43 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc--------------CCCcc-cceE--e--------------eeeec-------
Confidence            689999999999999999998765321              11000 0000  0              00000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  ....++.+|||||..+..      ..+...+  ..+|++++|+|.....+...........+... ..
T Consensus        44 ------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~  102 (166)
T cd01893          44 ------------PERVPTTIVDTSSRPQDR------ANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRL-GV  102 (166)
T ss_pred             ------------CCeEEEEEEeCCCchhhh------HHHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC
Confidence                        234688999999986541      1111222  45789999999865332211000011111111 23


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ++|+++|+||+|+............+..+.                     ..+....+++++||++|.|+.+++..+.+
T Consensus       103 ~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  161 (166)
T cd01893         103 KVPIILVGNKSDLRDGSSQAGLEEEMLPIM---------------------NEFREIETCVECSAKTLINVSEVFYYAQK  161 (166)
T ss_pred             CCCEEEEEEchhcccccchhHHHHHHHHHH---------------------HHHhcccEEEEeccccccCHHHHHHHHHH
Confidence            789999999999976543211111111110                     01212236999999999999999998877


Q ss_pred             HH
Q 014354          311 SA  312 (426)
Q Consensus       311 ~~  312 (426)
                      .+
T Consensus       162 ~~  163 (166)
T cd01893         162 AV  163 (166)
T ss_pred             Hh
Confidence            54

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.67  E-value=2.9e-16  Score=141.80  Aligned_cols=156  Identities=16%  Similarity=0.244  Sum_probs=90.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|++|||||||+++|++..+..        ..|.+     +.  .                      .....  
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--------~~~t~-----~~--~----------------------~~~~~--   55 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--------TSPTI-----GS--N----------------------VEEIV--   55 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC--------cCCcc-----cc--c----------------------eEEEE--
Confidence            4689999999999999999998754321        00100     00  0                      00000  


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                    .....+.||||||+..+.      ......+  ..+|++++|+|++....   +..........+.
T Consensus        56 --------------~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~  110 (174)
T cd04153          56 --------------YKNIRFLMWDIGGQESLR------SSWNTYY--TNTDAVILVIDSTDRER---LPLTKEELYKMLA  110 (174)
T ss_pred             --------------ECCeEEEEEECCCCHHHH------HHHHHHh--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHh
Confidence                          134689999999986541      1111122  35799999999876422   1111111112222


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ..++|+++|+||+|+.......++.+.+                     +..... ....+++++||++|.|+++++
T Consensus       111 ~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l---------------------~~~~~~-~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153         111 HEDLRKAVLLVLANKQDLKGAMTPAEISESL---------------------GLTSIR-DHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             chhhcCCCEEEEEECCCCCCCCCHHHHHHHh---------------------Cccccc-CCceEEEecccCCCCCHHHHH
Confidence               2368999999999986532111111111                     000000 012468999999999999999


Q ss_pred             HHHHH
Q 014354          306 KAVEE  310 (426)
Q Consensus       306 ~~l~~  310 (426)
                      ++|..
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01866 Rab2 Rab2 subfamily

Probab=99.67  E-value=1e-15  Score=137.12  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||++++++..+.....              .+...+..                 ...+.     
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--------------~t~~~~~~-----------------~~~~~-----   47 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFG-----------------ARMIT-----   47 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CccceeEE-----------------EEEEE-----
Confidence            4689999999999999999999876433111              01000000                 00000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .            ......+.||||||+.++.       .+...+ ...+|++|+|+|+....   .+. ....+...+.
T Consensus        48 ~------------~~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~il~v~d~~~~~---s~~-~~~~~~~~~~  103 (168)
T cd01866          48 I------------DGKQIKLQIWDTAGQESFR-------SITRSY-YRGAAGALLVYDITRRE---TFN-HLTSWLEDAR  103 (168)
T ss_pred             E------------CCEEEEEEEEECCCcHHHH-------HHHHHH-hccCCEEEEEEECCCHH---HHH-HHHHHHHHHH
Confidence            0            0122578999999986541       111111 13579999999987422   211 1122222222


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ..++|+|+|+||+|+.......  ......+..                     .  ....++++||++|+|+++++
T Consensus       104 ~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866         104 QHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAK---------------------E--HGLIFMETSAKTASNVEEAF  158 (168)
T ss_pred             HhCCCCCcEEEEEECcccccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence               2478999999999997533210  011111110                     1  13569999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      .++.+.+.
T Consensus       159 ~~~~~~~~  166 (168)
T cd01866         159 INTAKEIY  166 (168)
T ss_pred             HHHHHHHH
Confidence            99987764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.67  E-value=1.8e-15  Score=140.84  Aligned_cols=183  Identities=14%  Similarity=0.168  Sum_probs=109.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+|+|++|||||||+++++.... .+.+++++..++..       .++   ...+...-...-...+||+||.. 
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~-------~~D---~~~~~~~~~~~~~l~~gcic~~~-   87 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVIT-------KFD---AERLRKYGAPAIQINTGKECHLD-   87 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCC-------ccc---HHHHHHcCCcEEEEcCCCcccCC-
Confidence            3578999999999999999999998753 23577777766532       111   11111100112233578888742 


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                        ...+...+.  .....+++++||||.|. ..+.      .     + .......+.|+|+..+.....         .
T Consensus        88 --~~~~~~~l~--~~~~~~~d~IiIEt~G~l~~~~------~-----~-~~~~~~~i~Vvd~~~~d~~~~---------~  142 (207)
T TIGR00073        88 --AHMVAHALE--DLPLDDIDLLFIENVGNLVCPA------D-----F-DLGEHMRVVLLSVTEGDDKPL---------K  142 (207)
T ss_pred             --hHHHHHHHH--HhccCCCCEEEEecCCCcCCCc------c-----c-ccccCeEEEEEecCcccchhh---------h
Confidence              111211111  11123689999999993 2211      0     0 012355678888875443211         1


Q ss_pred             HHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .....+.|.++|+||+|+....  ........++                         ...+..+++++||++|.|+.+
T Consensus       143 ~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~-------------------------~~~~~~~i~~~Sa~~g~gv~~  197 (207)
T TIGR00073       143 YPGMFKEADLIVINKADLAEAVGFDVEKMKADAK-------------------------KINPEAEIILMSLKTGEGLDE  197 (207)
T ss_pred             hHhHHhhCCEEEEEHHHccccchhhHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHHH
Confidence            1223467899999999998642  1222222221                         123457899999999999999


Q ss_pred             HHHHHHHH
Q 014354          304 YFKAVEES  311 (426)
Q Consensus       304 l~~~l~~~  311 (426)
                      +++++.+.
T Consensus       198 l~~~i~~~  205 (207)
T TIGR00073       198 WLEFLEGQ  205 (207)
T ss_pred             HHHHHHHh
Confidence            99999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.66  E-value=1.1e-15  Score=136.40  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||++++++..+.....             + +..++...                 ..+..    .
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~-------------~-t~~~~~~~-----------------~~~~~----~   47 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYI-------------S-TIGVDFKI-----------------RTIEL----D   47 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------------C-ccceeEEE-----------------EEEEE----C
Confidence            679999999999999999999875432110             0 00000000                 00000    0


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.||||||+..+.       .+...+ ...++++|+|+|+....+-.. ....+..+.....
T Consensus        48 -------------~~~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~s~~~-l~~~~~~~~~~~~  105 (166)
T cd01869          48 -------------GKTIKLQIWDTAGQERFR-------TITSSY-YRGAHGIIIVYDVTDQESFNN-VKQWLQEIDRYAS  105 (166)
T ss_pred             -------------CEEEEEEEEECCCcHhHH-------HHHHHH-hCcCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCC
Confidence                         123578999999986641       111111 135799999999975322111 1111111111222


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|+|+|+||+|+.......  .+....+.                      . ....+++++||++|.|+.+++..|.
T Consensus       106 ~~~~~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869         106 ENVNKLLVGNKCDLTDKRVVD--YSEAQEFA----------------------D-ELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             CCCcEEEEEEChhcccccCCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCcCHHHHHHHHH
Confidence            468999999999987543211  01111110                      1 1235799999999999999999998


Q ss_pred             HHHH
Q 014354          310 ESAQ  313 (426)
Q Consensus       310 ~~~~  313 (426)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            7653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.66  E-value=7.9e-16  Score=136.28  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKiD  242 (426)
                      .++.+|||||+..+.       .+...+ ...+|++++|+|+.+..+....    ..++..+.   ..++|+++|+||+|
T Consensus        49 ~~~~l~D~~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~s~~~~----~~~l~~~~~~~~~~~pivvv~nK~D  116 (164)
T smart00175       49 VKLQIWDTAGQERFR-------SITSSY-YRGAVGALLVYDITNRESFENL----KNWLKELREYADPNVVIMLVGNKSD  116 (164)
T ss_pred             EEEEEEECCChHHHH-------HHHHHH-hCCCCEEEEEEECCCHHHHHHH----HHHHHHHHHhCCCCCeEEEEEEchh
Confidence            578899999986541       111111 1447999999999753332211    11222222   24799999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +.......  .+....+.                      .. ...+++++||.+|.|+.+++++|.+.+.+
T Consensus       117 ~~~~~~~~--~~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      117 LEDQRQVS--REEAEAFA----------------------EE-HGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             cccccCCC--HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            87632110  00111110                      11 13569999999999999999999987653

Rab GTPases are implicated in vesicle trafficking.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.66  E-value=9.3e-16  Score=138.15  Aligned_cols=161  Identities=20%  Similarity=0.138  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|||||||++++++..+.......       +........                       +..       
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t-------~~~~~~~~~-----------------------~~~-------   44 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKAT-------IGVDFEMER-----------------------FEI-------   44 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-------eeeEEEEEE-----------------------EEE-------
Confidence            5899999999999999999998654322111       000000000                       000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                 ......+.||||||+.++.       .+... .-..+|++++|+|+....   .+.. ...+...+.  
T Consensus        45 -----------~~~~~~l~i~Dt~G~~~~~-------~~~~~-~~~~ad~~ilv~d~~~~~---s~~~-~~~~~~~~~~~  101 (170)
T cd04108          45 -----------LGVPFSLQLWDTAGQERFK-------CIAST-YYRGAQAIIIVFDLTDVA---SLEH-TRQWLEDALKE  101 (170)
T ss_pred             -----------CCEEEEEEEEeCCChHHHH-------hhHHH-HhcCCCEEEEEEECcCHH---HHHH-HHHHHHHHHHh
Confidence                       0123578999999997652       11111 124579999999996521   1111 111222221  


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ....|+++|.||+|+...............+..                     . + ..+++.+||++|.|+.+++.
T Consensus       102 ~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~---------------------~-~-~~~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108         102 NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA---------------------E-M-QAEYWSVSALSGENVREFFF  158 (170)
T ss_pred             cCCCCCeEEEEEEChhcCccccccccHHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHHHHH
Confidence              123568999999998654321101111111100                     1 1 24689999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      .|...+.+
T Consensus       159 ~l~~~~~~  166 (170)
T cd04108         159 RVAALTFE  166 (170)
T ss_pred             HHHHHHHH
Confidence            99887754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.66  E-value=7.7e-16  Score=163.64  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiDl~  244 (426)
                      ..+.||||||+..+.      ..+...  ...+|++++|||+..+..++++.     .+..+...++| .|+|+||+|++
T Consensus        50 ~~v~~iDtPGhe~f~------~~~~~g--~~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dlv  116 (581)
T TIGR00475        50 YRLGFIDVPGHEKFI------SNAIAG--GGGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADRV  116 (581)
T ss_pred             EEEEEEECCCHHHHH------HHHHhh--hccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCCC
Confidence            678999999986541      112211  24579999999999887665532     23345567888 99999999999


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +..........+..+...              .     .+....++|++||++|.|+.+++.+|...+..
T Consensus       117 ~~~~~~~~~~ei~~~l~~--------------~-----~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       117 NEEEIKRTEMFMKQILNS--------------Y-----IFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CHHHHHHHHHHHHHHHHH--------------h-----CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            866433333333322211              0     01125789999999999999999888766544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.66  E-value=1.7e-15  Score=134.98  Aligned_cols=108  Identities=10%  Similarity=0.039  Sum_probs=66.8

Q ss_pred             EEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhH
Q 014354          170 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFA  249 (426)
Q Consensus       170 liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~  249 (426)
                      +|||||+....  ......+...  ...+|++++|+|+....+....+     ... + ..++|+++++||+|+.... .
T Consensus        41 ~iDtpG~~~~~--~~~~~~~~~~--~~~ad~il~v~d~~~~~s~~~~~-----~~~-~-~~~~~ii~v~nK~Dl~~~~-~  108 (158)
T PRK15467         41 DIDTPGEYFSH--PRWYHALITT--LQDVDMLIYVHGANDPESRLPAG-----LLD-I-GVSKRQIAVISKTDMPDAD-V  108 (158)
T ss_pred             cccCCccccCC--HHHHHHHHHH--HhcCCEEEEEEeCCCcccccCHH-----HHh-c-cCCCCeEEEEEccccCccc-H
Confidence            69999985431  1111222222  23579999999998765432211     111 1 2367999999999986532 1


Q ss_pred             HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          250 LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       250 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ..+.+.+.                         ......+++++||++|.|+.++++++.+.+..
T Consensus       109 ~~~~~~~~-------------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        109 AATRKLLL-------------------------ETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHHH-------------------------HcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence            11111111                         11112589999999999999999999887755

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.66  E-value=1.5e-15  Score=137.09  Aligned_cols=162  Identities=14%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++.+..+.....       |.+.. .+..                       .+..      
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~-------~t~~~-~~~~-----------------------~~~~------   45 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHD-------PTIED-AYKQ-----------------------QARI------   45 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcC-------Ccccc-eEEE-----------------------EEEE------
Confidence            579999999999999999999876542111       11100 0000                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.||||||+.++.       .+...+- ..++++|+|+|..+..+..... .....+.... 
T Consensus        46 ------------~~~~~~l~i~Dt~G~~~~~-------~l~~~~~-~~~d~~ilv~d~~~~~Sf~~~~-~~~~~i~~~~~  104 (172)
T cd04141          46 ------------DNEPALLDILDTAGQAEFT-------AMRDQYM-RCGEGFIICYSVTDRHSFQEAS-EFKKLITRVRL  104 (172)
T ss_pred             ------------CCEEEEEEEEeCCCchhhH-------HHhHHHh-hcCCEEEEEEECCchhHHHHHH-HHHHHHHHhcC
Confidence                        0123578899999997652       2222211 2368899999986544322211 1111122222 


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+|+|+||+|+.....+.  ......+                  +    ..+ ..+++++||++|.||+++|.+|
T Consensus       105 ~~~~piilvgNK~Dl~~~~~v~--~~~~~~~------------------a----~~~-~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141         105 TEDIPLVLVGNKVDLESQRQVT--TEEGRNL------------------A----REF-NCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             CCCCCEEEEEEChhhhhcCccC--HHHHHHH------------------H----HHh-CCEEEEEecCCCCCHHHHHHHH
Confidence            3478999999999986543111  0011101                  0    111 3579999999999999999999


Q ss_pred             HHHHHH
Q 014354          309 EESAQE  314 (426)
Q Consensus       309 ~~~~~~  314 (426)
                      ...+..
T Consensus       160 ~~~~~~  165 (172)
T cd04141         160 VREIRR  165 (172)
T ss_pred             HHHHHH
Confidence            876543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=99.66  E-value=1e-15  Score=144.56  Aligned_cols=193  Identities=17%  Similarity=0.186  Sum_probs=125.0

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc-cccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-MTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL  142 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v-~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~  142 (426)
                      ....+.|+.+|.|+.|||||||||+|+...  ++++++|+-+.-+- +.+...-.+.....--|++++..    .|||+|
T Consensus        52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~--hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L----~NGClC  125 (391)
T KOG2743|consen   52 SLGARIPVTIITGYLGAGKTTLLNYILTGQ--HGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVEL----RNGCLC  125 (391)
T ss_pred             CCCCccceEEEEecccCChHHHHHHHHccC--CCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHh----cCCeEE
Confidence            345677899999999999999999999764  56677776544221 00000000000001124555543    379999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-------cCCcEEEEEEeCCCCCCchh
Q 014354          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-------TFPTVVTYVVDTPRSANPMT  215 (426)
Q Consensus       143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-------~~~d~vl~VVDa~~~~~~~~  215 (426)
                      |+++  ..+++-+-.+.+ ..+.+++++++|.|+..|.       -+..+|..       -..|.+|.|||+.+.....+
T Consensus       126 CtVk--~~gvraie~lvq-kkGkfD~IllETTGlAnPa-------Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Ld  195 (391)
T KOG2743|consen  126 CTVK--DNGVRAIENLVQ-KKGKFDHILLETTGLANPA-------PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLD  195 (391)
T ss_pred             EEec--chHHHHHHHHHh-cCCCcceEEEeccCCCCcH-------HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhc
Confidence            9965  556666666666 5677999999999999983       33344422       23689999999987654322


Q ss_pred             hhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC
Q 014354          216 FMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN  287 (426)
Q Consensus       216 ~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  287 (426)
                      -.+..-.+-....|...+.-|++||.|++..+.+..+++.+..++.               ++.+++..|+.
T Consensus       196 e~k~~g~i~EA~~QiA~AD~II~NKtDli~~e~~~~l~q~I~~INs---------------lA~m~~Tky~~  252 (391)
T KOG2743|consen  196 EEKPDGLINEATRQIALADRIIMNKTDLVSEEEVKKLRQRIRSINS---------------LAQMIETKYSR  252 (391)
T ss_pred             ccCcccchHHHHHHHhhhheeeeccccccCHHHHHHHHHHHHHhhh---------------HHHhhhhhhcc
Confidence            1111111222344667788999999999999988888888876654               36666666663

>cd00880 Era_like Era (E

Probab=99.66  E-value=1.3e-15  Score=132.53  Aligned_cols=118  Identities=23%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CCCEEEEcCCCcccccchhchH-HHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~-~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ...+.||||||+.+........ ......+  ..+|++++|+|+..........     +.......+.|.++|+||+|+
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~  116 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL  116 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence            4689999999998763222111 1111122  3479999999998876554421     233455678999999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ........+.....                      .........+++++||++|.|+.++++++.+.
T Consensus       117 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         117 LPEEEEEELLELRL----------------------LILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             CChhhHHHHHHHHH----------------------hhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            98764433321000                      00123456789999999999999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.66  E-value=8e-16  Score=137.90  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ...+.+|||||+..+..       +...+ ...+|++|+|+|.....+-.. ....+..+... ..++|+|+|+||+|+.
T Consensus        48 ~~~l~i~Dt~G~~~~~~-------~~~~~-~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~-~~~~piiiv~nK~Dl~  117 (166)
T cd00877          48 KIRFNVWDTAGQEKFGG-------LRDGY-YIGGQCAIIMFDVTSRVTYKN-VPNWHRDLVRV-CGNIPIVLCGNKVDIK  117 (166)
T ss_pred             EEEEEEEECCCChhhcc-------ccHHH-hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHh-CCCCcEEEEEEchhcc
Confidence            36789999999976421       11111 134799999999875432211 11111111111 1279999999999997


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ........    ..+.                      . ....+++++||++|.|+.+++++|.+.+..
T Consensus       118 ~~~~~~~~----~~~~----------------------~-~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         118 DRKVKAKQ----ITFH----------------------R-KKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             cccCCHHH----HHHH----------------------H-HcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            43211100    0000                      0 123579999999999999999999987654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.66  E-value=7.8e-16  Score=138.35  Aligned_cols=171  Identities=13%  Similarity=0.153  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|++|||||||++++.+..+.....             | +.  .  ...             ...+..     .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~-------------~-t~--~--~~~-------------~~~~~~-----~   45 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-------------P-TV--F--ENY-------------VADIEV-----D   45 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------------C-cc--c--cce-------------EEEEEE-----C
Confidence            469999999999999999999876542111             0 00  0  000             000000     0


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.||||||+.++..       +.. .....+|++++|.|.....+-....   ..+...+.+
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~-~~~~~~d~~i~v~~~~~~~s~~~~~---~~~~~~~~~  101 (175)
T cd01870          46 -------------GKQVELALWDTAGQEDYDR-------LRP-LSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKH  101 (175)
T ss_pred             -------------CEEEEEEEEeCCCchhhhh-------ccc-cccCCCCEEEEEEECCCHHHHHHHH---HHHHHHHHh
Confidence                         1335789999999866421       100 1113468888888876432111110   111122222


Q ss_pred             --ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          230 --TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       230 --~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                        .++|+++|+||+|+.........   +.....         .......+..+...+...+++++||++|.|+++++.+
T Consensus       102 ~~~~~piilv~nK~Dl~~~~~~~~~---i~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  169 (175)
T cd01870         102 FCPNVPIILVGNKKDLRNDEHTRRE---LAKMKQ---------EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEM  169 (175)
T ss_pred             hCCCCCEEEEeeChhcccChhhhhh---hhhccC---------CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHH
Confidence              47899999999998754321111   110000         0000111111122233457999999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |.+.+
T Consensus       170 l~~~~  174 (175)
T cd01870         170 ATRAA  174 (175)
T ss_pred             HHHHh
Confidence            98654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04177 RSR1 RSR1 subgroup

Probab=99.66  E-value=9.9e-16  Score=137.18  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHhhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ..+.+|||||+.++.       .+.+... ..++.+++|+|......-... ..... +.......++|+|+|+||+|+.
T Consensus        49 ~~~~i~Dt~G~~~~~-------~~~~~~~-~~~~~~vlv~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~  119 (168)
T cd04177          49 CDLEILDTAGTEQFT-------AMRELYI-KSGQGFLLVYSVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLE  119 (168)
T ss_pred             EEEEEEeCCCcccch-------hhhHHHH-hhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence            577899999997752       1222211 235788888888653221111 11111 1111223479999999999987


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      ......  ......+.                      ..+...+++++||++|.|+.++++++...+
T Consensus       120 ~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         120 DDRQVS--REDGVSLS----------------------QQWGNVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             ccCccC--HHHHHHHH----------------------HHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            543211  01111110                      113346799999999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.66  E-value=1.2e-15  Score=136.43  Aligned_cols=163  Identities=16%  Similarity=0.197  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|++|||||||++++++..+.....       |... .++..    +                  .+..     
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~-------~t~~-~~~~~----~------------------~~~~-----   47 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI-------STIG-IDFKI----R------------------TIEL-----   47 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccc-------cCcc-ceEEE----E------------------EEEE-----
Confidence            4689999999999999999999876543111       0000 00000    0                  0000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .             .....+.||||||+..+.      ......+  ..+|++|+|+|+....+-.. ....+.......
T Consensus        48 ~-------------~~~~~l~l~D~~g~~~~~------~~~~~~~--~~ad~~i~v~d~~~~~s~~~-~~~~~~~i~~~~  105 (167)
T cd01867          48 D-------------GKKIKLQIWDTAGQERFR------TITTAYY--RGAMGIILVYDITDEKSFEN-IRNWMRNIEEHA  105 (167)
T ss_pred             C-------------CEEEEEEEEeCCchHHHH------HHHHHHh--CCCCEEEEEEECcCHHHHHh-HHHHHHHHHHhC
Confidence            0             122578899999986641      1111112  35799999999865332111 111111111112


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..+.|+++|+||+|+.......  .+....+.                      .. ...+++++||++|.|+.+++.++
T Consensus       106 ~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867         106 SEDVERMLVGNKCDMEEKRVVS--KEEGEALA----------------------DE-YGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             CCCCcEEEEEECcccccccCCC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHHH
Confidence            3468999999999998543110  11111110                      01 12468999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T cd01867         161 AKDIK  165 (167)
T ss_pred             HHHHH
Confidence            87653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04144 Ras2 Ras2 subfamily

Probab=99.66  E-value=9.9e-16  Score=140.37  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNKiD  242 (426)
                      ..+.||||||+.++.       .+...+ ...+|++|+|+|.....+... ....+..+....   ..++|+|||+||+|
T Consensus        47 ~~l~i~Dt~G~~~~~-------~~~~~~-~~~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilvgNK~D  117 (190)
T cd04144          47 CMLEVLDTAGQEEYT-------ALRDQW-IREGEGFILVYSITSRSTFER-VERFREQIQRVKDESAADVPIMIVGNKCD  117 (190)
T ss_pred             EEEEEEECCCchhhH-------HHHHHH-HHhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcccCCCCCEEEEEEChh
Confidence            468899999987652       111111 123689999999865432211 111111111111   14689999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +........  .....+.                      ..+ ..+++++||++|.|+.+++.++.+.+..
T Consensus       118 l~~~~~v~~--~~~~~~~----------------------~~~-~~~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         118 KVYEREVST--EEGAALA----------------------RRL-GCEFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             ccccCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            865332110  0011110                      112 2579999999999999999999876654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.66  E-value=1.5e-15  Score=156.32  Aligned_cols=161  Identities=23%  Similarity=0.309  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+.+.+|+|+|+||||||||+|+|++.....            ++.+|++|    ++.+              .+.+.  
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------vs~~pgtT----rd~~--------------~~~i~--  247 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------VSDIKGTT----RDVV--------------EGDFE--  247 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcE----EEEE--------------EEEEE--
Confidence            3466789999999999999999999875432            45556554    2211              00011  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                       ..+..+.||||||+.+..  ...... +.... ....+|++++|+|++...+....      +
T Consensus       248 -----------------~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~  302 (442)
T TIGR00450       248 -----------------LNGILIKLLDTAGIREHA--DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------L  302 (442)
T ss_pred             -----------------ECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------H
Confidence                             134578999999997642  111111 11111 11358999999999876544332      2


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..+...++|+|+|+||+|+.... ..    .+.   .                       ....+++.+||++ .||.+
T Consensus       303 l~~~~~~~~piIlV~NK~Dl~~~~-~~----~~~---~-----------------------~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       303 IIDLNKSKKPFILVLNKIDLKINS-LE----FFV---S-----------------------SKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             HHHHhhCCCCEEEEEECccCCCcc-hh----hhh---h-----------------------hcCCceEEEEEec-CCHHH
Confidence            223344578999999999997541 11    110   0                       1124688999998 69999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      +++.|.+.+...
T Consensus       351 ~~~~L~~~i~~~  362 (442)
T TIGR00450       351 LVDLLTQKINAF  362 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            998888876553

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01863 Rab18 Rab18 subfamily

Probab=99.66  E-value=8.9e-16  Score=135.97  Aligned_cols=111  Identities=20%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH-HHHhhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~-~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .++.||||||+..+.       .+...+ ...+|++++|+|.....+..... ..+..+ ......+.|+++|+||+|+.
T Consensus        49 ~~~~l~D~~g~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          49 VKLAIWDTAGQERFR-------TLTSSY-YRGAQGVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEEEEEECCCchhhh-------hhhHHH-hCCCCEEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            578999999986541       111111 13579999999986533221111 011111 11224578999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ......+.   ...+..                       ....+++++||++|.|+.++++.+.+.
T Consensus       120 ~~~~~~~~---~~~~~~-----------------------~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         120 NREVTREE---GLKFAR-----------------------KHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ccccCHHH---HHHHHH-----------------------HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            43211111   111110                       123579999999999999999988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.66  E-value=1.2e-15  Score=139.07  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh---hccCCeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~---~~~~P~IlVlNK  240 (426)
                      .+..+.||||||+..+       ..+...+- ..+|++|+|+|++...+-...   ...+...+.   ..+.|++||+||
T Consensus        59 ~~~~~~i~D~~Gq~~~-------~~~~~~~~-~~a~~iI~V~D~s~~~s~~~~---~~~l~~~l~~~~~~~~piilv~NK  127 (181)
T PLN00223         59 KNISFTVWDVGGQDKI-------RPLWRHYF-QNTQGLIFVVDSNDRDRVVEA---RDELHRMLNEDELRDAVLLVFANK  127 (181)
T ss_pred             CCEEEEEEECCCCHHH-------HHHHHHHh-ccCCEEEEEEeCCcHHHHHHH---HHHHHHHhcCHhhCCCCEEEEEEC
Confidence            3467899999998654       11222111 347999999999754322111   111112221   136899999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +|+.......++...+.                     .  ... .....++++||++|+||.+++++|.+.+.
T Consensus       128 ~Dl~~~~~~~~~~~~l~---------------------l--~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        128 QDLPNAMNAAEITDKLG---------------------L--HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             CCCCCCCCHHHHHHHhC---------------------c--cccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            99876532222221111                     0  000 01123678999999999999999987654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.66  E-value=1.9e-15  Score=143.57  Aligned_cols=135  Identities=21%  Similarity=0.316  Sum_probs=81.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ++.++.||||||+.++.      ..+...+  ..+|.+++|+|+..+...+.     ..++..+...++|.++|+||+|+
T Consensus        62 ~~~~i~liDTPG~~~f~------~~~~~~l--~~aD~~IlVvd~~~g~~~~~-----~~~~~~~~~~~~P~iivvNK~D~  128 (237)
T cd04168          62 EDTKVNLIDTPGHMDFI------AEVERSL--SVLDGAILVISAVEGVQAQT-----RILWRLLRKLNIPTIIFVNKIDR  128 (237)
T ss_pred             CCEEEEEEeCCCccchH------HHHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECccc
Confidence            56789999999998752      1222222  33699999999998775433     23445556678999999999999


Q ss_pred             CChHhHHHHHHHHHHHHH---------------------------Hhcc-cc----ch-------hhhHHHHhhhhHhhh
Q 014354          244 AQHEFALEWMQDFEVFQA---------------------------AISS-DH----SY-------TSTLTNSLSLALDEF  284 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~---------------------------~~~~-~~----~~-------~~~~~~~~~~~l~~~  284 (426)
                      ..... .+....++....                           .+.. +.    .|       ...+...+...+.. 
T Consensus       129 ~~a~~-~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~-  206 (237)
T cd04168         129 AGADL-EKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK-  206 (237)
T ss_pred             cCCCH-HHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh-
Confidence            86321 122222221111                           0000 00    00       11112222221111 


Q ss_pred             hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          285 YKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       285 ~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      ....|++.-||.++.|+..|++.|...+|
T Consensus       207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         207 RKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             CCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence            23467888899999999999999998876

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.66  E-value=5.8e-16  Score=135.48  Aligned_cols=154  Identities=18%  Similarity=0.229  Sum_probs=90.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK  151 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~  151 (426)
                      |+|+|++|||||||+|+|.+..+....             .| +..+..                   ..+.        
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~-------------~~-t~~~~~-------------------~~~~--------   40 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT-------------IP-TVGFNM-------------------RKVT--------   40 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc-------------cC-CCCcce-------------------EEEE--------
Confidence            799999999999999999988643211             11 110000                   0000        


Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH---h
Q 014354          152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---Y  228 (426)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l---~  228 (426)
                                 .+...+.+|||||+..+.      ......+  ..++++++|+|+.....   +..........+   .
T Consensus        41 -----------~~~~~~~~~D~~g~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~   98 (159)
T cd04159          41 -----------KGNVTLKVWDLGGQPRFR------SMWERYC--RGVNAIVYVVDAADRTA---LEAAKNELHDLLEKPS   98 (159)
T ss_pred             -----------ECCEEEEEEECCCCHhHH------HHHHHHH--hcCCEEEEEEECCCHHH---HHHHHHHHHHHHcChh
Confidence                       123578999999986641      1111222  34799999999865321   111111111111   1


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+........+...+. +.                  .   ......+++++||++|.|+.+++++|
T Consensus        99 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l  156 (159)
T cd04159          99 LEGIPLLVLGNKNDLPGALSVDELIEQMN-LK------------------S---ITDREVSCYSISCKEKTNIDIVLDWL  156 (159)
T ss_pred             hcCCCEEEEEeCccccCCcCHHHHHHHhC-cc------------------c---ccCCceEEEEEEeccCCChHHHHHHH
Confidence            24789999999999876543222211110 00                  0   01123568999999999999999998


Q ss_pred             HH
Q 014354          309 EE  310 (426)
Q Consensus       309 ~~  310 (426)
                      .+
T Consensus       157 ~~  158 (159)
T cd04159         157 IK  158 (159)
T ss_pred             hh
Confidence            64

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04122 Rab14 Rab14 subfamily

Probab=99.66  E-value=1.8e-15  Score=135.18  Aligned_cols=161  Identities=17%  Similarity=0.238  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||++++.+..+...              .+.+...+..                  .....   + 
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~--------------~~~t~~~~~~------------------~~~~~---~-   46 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFG------------------TRIIE---V-   46 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCcccceeEE------------------EEEEE---E-
Confidence            5799999999999999999998754321              1111100000                  00000   0 


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ......+.||||||+..+.      ......+  ..++++|+|+|.....+-.. ....+........
T Consensus        47 ------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  105 (166)
T cd04122          47 ------------NGQKIKLQIWDTAGQERFR------AVTRSYY--RGAAGALMVYDITRRSTYNH-LSSWLTDARNLTN  105 (166)
T ss_pred             ------------CCEEEEEEEEECCCcHHHH------HHHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC
Confidence                        0123578999999986641      1111122  34799999999875322111 1111111111223


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .+.|++||+||+|+.......  .+....+.                      . ....+++++||++|.|+.+++..+.
T Consensus       106 ~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         106 PNTVIFLIGNKADLEAQRDVT--YEEAKQFA----------------------D-ENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             CCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            468999999999997653211  01111110                      0 1235799999999999999998887


Q ss_pred             HHH
Q 014354          310 ESA  312 (426)
Q Consensus       310 ~~~  312 (426)
                      ..+
T Consensus       161 ~~~  163 (166)
T cd04122         161 KKI  163 (166)
T ss_pred             HHH
Confidence            655

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01861 Rab6 Rab6 subfamily

Probab=99.65  E-value=8.9e-16  Score=135.84  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|++|||||||++++++.......             .|..+ .+.   .              ...+..    . 
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~-------------~~~~~-~~~---~--------------~~~~~~----~-   45 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQY-------------QATIG-IDF---L--------------SKTMYL----E-   45 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccC-------------CCcee-eeE---E--------------EEEEEE----C-
Confidence            6899999999999999999987654311             11110 000   0              000000    0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-hh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~~  229 (426)
                                  ....++.+|||||+..+.       .+...+ ...++++++|+|.....+... .   ..++..+ ..
T Consensus        46 ------------~~~~~l~~~D~~G~~~~~-------~~~~~~-~~~~~~ii~v~d~~~~~s~~~-~---~~~~~~~~~~  101 (161)
T cd01861          46 ------------DKTVRLQLWDTAGQERFR-------SLIPSY-IRDSSVAVVVYDITNRQSFDN-T---DKWIDDVRDE  101 (161)
T ss_pred             ------------CEEEEEEEEECCCcHHHH-------HHHHHH-hccCCEEEEEEECcCHHHHHH-H---HHHHHHHHHh
Confidence                        122468999999986541       111111 134789999999865332211 1   1111212 22


Q ss_pred             c--cCCeEEEEecCCCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          230 T--RLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       230 ~--~~P~IlVlNKiDl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      .  +.|+++|+||+|+...... ......+.                         . ..+.+++++||++|.|++++++
T Consensus       102 ~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-------------------------~-~~~~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861         102 RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA-------------------------K-ELNAMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             CCCCCEEEEEEEChhccccCccCHHHHHHHH-------------------------H-HhCCEEEEEeCCCCCCHHHHHH
Confidence            2  5899999999999643211 11111110                         1 1236799999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      +|.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            99764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01868 Rab11_like Rab11-like

Probab=99.65  E-value=1.5e-15  Score=135.22  Aligned_cols=158  Identities=20%  Similarity=0.281  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+.....       |..     +..+...                  .+...     
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~~-----   48 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSK-------STI-----GVEFATR------------------SIQID-----   48 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Ccc-----ceEEEEE------------------EEEEC-----
Confidence            579999999999999999999876432110       100     0000000                  00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                   .....+.||||||+..+.       .+...+ -..++++|+|+|+....+   +. ....++..+. 
T Consensus        49 -------------~~~~~~~l~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s---~~-~~~~~~~~~~~  103 (165)
T cd01868          49 -------------GKTIKAQIWDTAGQERYR-------AITSAY-YRGAVGALLVYDITKKQT---FE-NVERWLKELRD  103 (165)
T ss_pred             -------------CEEEEEEEEeCCChHHHH-------HHHHHH-HCCCCEEEEEEECcCHHH---HH-HHHHHHHHHHH
Confidence                         122578899999986641       122211 134689999999874222   21 1112222222 


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ..++|+++|+||+|+......  ..+....+..                     .  ...+++++||++|.|+.++++
T Consensus       104 ~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~  158 (165)
T cd01868         104 HADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAE---------------------K--NGLSFIETSALDGTNVEEAFK  158 (165)
T ss_pred             hCCCCCeEEEEEECccccccccC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHH
Confidence              235899999999998754321  0111111110                     1  235799999999999999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      +|...+
T Consensus       159 ~l~~~i  164 (165)
T cd01868         159 QLLTEI  164 (165)
T ss_pred             HHHHHh
Confidence            987654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.65  E-value=1.2e-15  Score=138.05  Aligned_cols=168  Identities=17%  Similarity=0.185  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||+.+++...+.....       |.+.. .+...+.                      +.      
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~-------~t~~~-~~~~~~~----------------------~~------   45 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVFD-NYSANVM----------------------VD------   45 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCC-------Cccee-eeEEEEE----------------------EC------
Confidence            479999999999999999999865433211       11100 0000000                      00      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                   .....+.||||||+..+.       .+...+ -..+|++|+|+|..+..   .|......+...+. 
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~---sf~~~~~~~~~~~~~  101 (174)
T cd01871          46 -------------GKPVNLGLWDTAGQEDYD-------RLRPLS-YPQTDVFLICFSLVSPA---SFENVRAKWYPEVRH  101 (174)
T ss_pred             -------------CEEEEEEEEECCCchhhh-------hhhhhh-cCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHH
Confidence                         123678999999987652       121111 13579999999997532   22211111111121 


Q ss_pred             -hccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                       ..++|+|||.||+|+..... ...+....             ...+....+..+...++..+++++||++|.|++++|+
T Consensus       102 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  168 (174)
T cd01871         102 HCPNTPIILVGTKLDLRDDKDTIEKLKEKK-------------LTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFD  168 (174)
T ss_pred             hCCCCCEEEEeeChhhccChhhHHHHhhcc-------------CCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHH
Confidence             23689999999999965321 11111000             0011111122222223345799999999999999999


Q ss_pred             HHHH
Q 014354          307 AVEE  310 (426)
Q Consensus       307 ~l~~  310 (426)
                      .+.+
T Consensus       169 ~l~~  172 (174)
T cd01871         169 EAIR  172 (174)
T ss_pred             HHHH
Confidence            8875

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.65  E-value=1.7e-15  Score=138.14  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh---ccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~---~~~P~IlVlNKi  241 (426)
                      +..+.||||||+..+.       .+...+ -..+|++|+|+|++...   .+......+...+..   ...|++||+||+
T Consensus        60 ~~~~~l~D~~G~~~~~-------~~~~~~-~~~ad~iI~v~D~t~~~---s~~~~~~~l~~~~~~~~~~~~piilv~NK~  128 (182)
T PTZ00133         60 NLKFTMWDVGGQDKLR-------PLWRHY-YQNTNGLIFVVDSNDRE---RIGDAREELERMLSEDELRDAVLLVFANKQ  128 (182)
T ss_pred             CEEEEEEECCCCHhHH-------HHHHHH-hcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhCHhhcCCCEEEEEeCC
Confidence            4688999999996541       122211 13479999999986432   121111122222221   368999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      |+.......++...+.                     ... .......++++||++|.|+.+++++|.+.+..
T Consensus       129 Dl~~~~~~~~i~~~l~---------------------~~~-~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        129 DLPNAMSTTEVTEKLG---------------------LHS-VRQRNWYIQGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             CCCCCCCHHHHHHHhC---------------------CCc-ccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence            9865322111211111                     000 00112347789999999999999999876544

>cd04113 Rab4 Rab4 subfamily

Probab=99.65  E-value=1e-15  Score=135.74  Aligned_cols=112  Identities=19%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+..+.       .+...+ ...+|++++|+|+....+... ....+.....+...++|+++|+||+|+..
T Consensus        49 ~~l~l~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~  119 (161)
T cd04113          49 VKLQIWDTAGQERFR-------SVTRSY-YRGAAGALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDLAD  119 (161)
T ss_pred             EEEEEEECcchHHHH-------HhHHHH-hcCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence            578899999986642       111111 134799999999976443221 11112222223345789999999999976


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      .....  ......+.                      ..+ ..+++.+||++|.|+.++++++.+.
T Consensus       120 ~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         120 QREVT--FLEASRFA----------------------QEN-GLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             hccCC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            43210  01111110                      011 2679999999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.65  E-value=7.6e-15  Score=135.55  Aligned_cols=125  Identities=10%  Similarity=-0.044  Sum_probs=73.6

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      .++.+|||||+.+...   ......+.+....+|++++|.+.  .++..+     ...+..+...+.|+++|+||+|+..
T Consensus        52 ~~l~l~DtpG~~~~~~---~~~~~l~~~~~~~~d~~l~v~~~--~~~~~d-----~~~~~~l~~~~~~~ilV~nK~D~~~  121 (197)
T cd04104          52 PNVTLWDLPGIGSTAF---PPDDYLEEMKFSEYDFFIIISST--RFSSND-----VKLAKAIQCMGKKFYFVRTKVDRDL  121 (197)
T ss_pred             CCceEEeCCCCCcccC---CHHHHHHHhCccCcCEEEEEeCC--CCCHHH-----HHHHHHHHHhCCCEEEEEecccchh
Confidence            5789999999976421   11122222222346888887553  233322     2334445566899999999999975


Q ss_pred             hHhH---------HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc--cCCCHHHHHHHHHHHHHH
Q 014354          246 HEFA---------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       246 ~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~--~g~gv~~l~~~l~~~~~~  314 (426)
                      +...         .+.++.+..   .          +...+..   ......+++.+|+.  .+.|+..|.+.+...+++
T Consensus       122 ~~~~~~~~~~~~~~~~l~~i~~---~----------~~~~~~~---~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         122 SNEQRSKPRSFNREQVLQEIRD---N----------CLENLQE---AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             hhhhccccccccHHHHHHHHHH---H----------HHHHHHH---cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            4321         112222211   1          0011110   11234589999998  689999999999999987


Q ss_pred             HH
Q 014354          315 FM  316 (426)
Q Consensus       315 ~~  316 (426)
                      ..
T Consensus       186 ~~  187 (197)
T cd04104         186 HK  187 (197)
T ss_pred             HH
Confidence            43

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04127 Rab27A Rab27a subfamily

Probab=99.65  E-value=3.5e-15  Score=134.83  Aligned_cols=111  Identities=19%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi  241 (426)
                      ..+.||||||+.++.       .+...+ -..++++|+|+|+....   .|..- ..++..+.    ..+.|+++|+||+
T Consensus        63 ~~~~i~Dt~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~  130 (180)
T cd04127          63 IHLQLWDTAGQERFR-------SLTTAF-FRDAMGFLLIFDLTNEQ---SFLNV-RNWMSQLQTHAYCENPDIVLCGNKA  130 (180)
T ss_pred             EEEEEEeCCChHHHH-------HHHHHH-hCCCCEEEEEEECCCHH---HHHHH-HHHHHHHHHhcCCCCCcEEEEEeCc
Confidence            678999999986641       122211 13579999999986532   22111 11222222    2368999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      |+.......  ......+.                      ..+ ..+++++||++|.|+.+++++|.+.+.
T Consensus       131 Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         131 DLEDQRQVS--EEQAKALA----------------------DKY-GIPYFETSAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             cchhcCccC--HHHHHHHH----------------------HHc-CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            997543211  01111111                      111 257999999999999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04109 Rab28 Rab28 subfamily

Probab=99.65  E-value=1.6e-15  Score=141.85  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||+++|++..+.....       |       +..++....                .+..     .+
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~-------~-------T~~~d~~~~----------------~i~~-----~~   46 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYK-------Q-------TIGLDFFSK----------------RVTL-----PG   46 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCC-------C-------ceeEEEEEE----------------EEEe-----CC
Confidence            68999999999999999999876543211       1       111110000                0000     00


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                  .....+.||||||+..+.       .+...+ ...+|++|+|+|.+...+... ....+..+....  
T Consensus        47 ------------~~~~~~~i~Dt~G~~~~~-------~l~~~~-~~~ad~iilV~D~t~~~s~~~-~~~w~~~l~~~~~~  105 (215)
T cd04109          47 ------------NLNVTLQVWDIGGQSIGG-------KMLDKY-IYGAHAVFLVYDVTNSQSFEN-LEDWYSMVRKVLKS  105 (215)
T ss_pred             ------------CCEEEEEEEECCCcHHHH-------HHHHHH-hhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhccc
Confidence                        123578999999986541       222222 135799999999865322111 111111111111  


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ....|+|+|+||+|+.......  ......+.                      ..+ ..+++.+||++|.|+.++|++
T Consensus       106 ~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109         106 SETQPLVVLVGNKTDLEHNRTVK--DDKHARFA----------------------QAN-GMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             cCCCceEEEEEECcccccccccC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHH
Confidence             1246789999999997533211  01111111                      111 256899999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      |...+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9877654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.65  E-value=4.8e-15  Score=143.01  Aligned_cols=180  Identities=15%  Similarity=0.173  Sum_probs=111.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcC----CCCCCCc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGI  141 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~----l~~ng~i  141 (426)
                      .++..+|.|+|+|||||||||+++++..... ..++++..|.+..       .|   ..+    +...+    ...+||+
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~-------~D---a~r----I~~~g~pvvqi~tG~~  165 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV-------ND---AAR----IRATGTPAIQVNTGKG  165 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH-------HH---HHH----HHhcCCcEEEecCCCC
Confidence            4567899999999999999999999986544 3455555443211       11   111    12222    2246888


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       142 ~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                      ||.   ....+...+..+.  ..+.+++||++.|. ..+.. ..++.           ..-+.|++..++.+...     
T Consensus       166 Chl---~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~-fdlge-----------~~~v~vlsV~eg~dkpl-----  223 (290)
T PRK10463        166 CHL---DAQMIADAAPRLP--LDDNGILFIENVGNLVCPAS-FDLGE-----------KHKVAVLSVTEGEDKPL-----  223 (290)
T ss_pred             CcC---cHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCc-cchhh-----------ceeEEEEECccccccch-----
Confidence            874   2333333333332  35579999999996 34321 01111           23457777776643211     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g  298 (426)
                          ..-.+...+.++|+||+|++..  ..+....+.++                         ...++.++|++||++|
T Consensus       224 ----Kyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr-------------------------~lnp~a~I~~vSA~tG  274 (290)
T PRK10463        224 ----KYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAR-------------------------EVNPEIEIILISATSG  274 (290)
T ss_pred             ----hccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHH-------------------------hhCCCCcEEEEECCCC
Confidence                1112347889999999999863  22333333332                         2346788999999999


Q ss_pred             CCHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEES  311 (426)
Q Consensus       299 ~gv~~l~~~l~~~  311 (426)
                      +|++++++||...
T Consensus       275 eGld~L~~~L~~~  287 (290)
T PRK10463        275 EGMDQWLNWLETQ  287 (290)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999763

>cd00879 Sar1 Sar1 subfamily

Probab=99.65  E-value=1.8e-15  Score=138.09  Aligned_cols=169  Identities=19%  Similarity=0.197  Sum_probs=92.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+++|.+..... .       .|...                          ++.+.+.    
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~-------~~T~~--------------------------~~~~~i~----   59 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ-H-------VPTLH--------------------------PTSEELT----   59 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcc-c-------CCccC--------------------------cceEEEE----
Confidence            45778999999999999999999865321 0       01000                          0000011    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.+|||||+..+.       .+...+ ...++.+++|+|+....   .+......+...+
T Consensus        60 ---------------~~~~~~~l~D~~G~~~~~-------~~~~~~-~~~ad~iilV~D~~~~~---s~~~~~~~~~~i~  113 (190)
T cd00879          60 ---------------IGNIKFKTFDLGGHEQAR-------RLWKDY-FPEVDGIVFLVDAADPE---RFQESKEELDSLL  113 (190)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH-------HHHHHH-hccCCEEEEEEECCcHH---HHHHHHHHHHHHH
Confidence                           123578899999986541       111111 13468999999987532   1111111112222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..+.|+++|+||+|+............+.    ...       ..........+......+++++||++|.|+.++
T Consensus       114 ~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~  182 (190)
T cd00879         114 SDEELANVPFLILGNKIDLPGAVSEEELRQALG----LYG-------TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEA  182 (190)
T ss_pred             cCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC----ccc-------ccccccccccccCceeEEEEEeEecCCCChHHH
Confidence            1   35689999999999875322212211111    000       000000000001112346899999999999999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      +++|...
T Consensus       183 ~~~l~~~  189 (190)
T cd00879         183 FRWLSQY  189 (190)
T ss_pred             HHHHHhh
Confidence            9999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.65  E-value=2.6e-15  Score=138.05  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ++..+.||||||+.++.      ......+  ..+|++++|+|+..+.....     ..++..+...++|.++|+||+|+
T Consensus        63 ~~~~~~l~DtpG~~~~~------~~~~~~~--~~~d~~ilV~d~~~~~~~~~-----~~~~~~~~~~~~p~iiv~NK~Dl  129 (194)
T cd01891          63 KDTKINIVDTPGHADFG------GEVERVL--SMVDGVLLLVDASEGPMPQT-----RFVLKKALELGLKPIVVINKIDR  129 (194)
T ss_pred             CCEEEEEEECCCcHHHH------HHHHHHH--HhcCEEEEEEECCCCccHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence            45788999999997752      1122222  34699999999987653322     12233344568999999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ..... ......+..+...+              .... . ....+++++||++|.|+.++.
T Consensus       130 ~~~~~-~~~~~~~~~~~~~~--------------~~~~-~-~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         130 PDARP-EEVVDEVFDLFIEL--------------GATE-E-QLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             CCCCH-HHHHHHHHHHHHHh--------------CCcc-c-cCccCEEEeehhccccccccc
Confidence            75321 11222222111110              0000 0 013579999999998886553

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.64  E-value=3.1e-15  Score=144.69  Aligned_cols=70  Identities=17%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      +++++.||||||+.++.      ..+...+  ..+|++++|||+..+...++     ..++..+...++|.++++||+|+
T Consensus        62 ~~~~i~liDTPG~~df~------~~~~~~l--~~aD~ailVVDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNK~D~  128 (270)
T cd01886          62 KDHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVAGVEPQT-----ETVWRQADRYNVPRIAFVNKMDR  128 (270)
T ss_pred             CCEEEEEEECCCcHHHH------HHHHHHH--HHcCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence            56899999999997652      1222222  34699999999999887654     23455566788999999999999


Q ss_pred             CCh
Q 014354          244 AQH  246 (426)
Q Consensus       244 ~~~  246 (426)
                      ...
T Consensus       129 ~~a  131 (270)
T cd01886         129 TGA  131 (270)
T ss_pred             CCC
Confidence            753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12736 elongation factor Tu; Reviewed

Probab=99.64  E-value=2.3e-15  Score=153.36  Aligned_cols=118  Identities=20%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      ++.++.||||||+.++.      ..+...  ...+|++++|||+..+...++     ...+..+...++| .|+|+||+|
T Consensus        73 ~~~~i~~iDtPGh~~f~------~~~~~~--~~~~d~~llVvd~~~g~~~~t-----~~~~~~~~~~g~~~~IvviNK~D  139 (394)
T PRK12736         73 EKRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQT-----REHILLARQVGVPYLVVFLNKVD  139 (394)
T ss_pred             CCcEEEEEECCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCEEEEEEEecC
Confidence            44689999999986642      112111  245799999999998877665     3344556677899 568899999


Q ss_pred             CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC--------CHHHHHHHHHHHH
Q 014354          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA--------GIEAYFKAVEESA  312 (426)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~--------gv~~l~~~l~~~~  312 (426)
                      ++..+...+ +...+..+...              .     .| ..+.+++++||++|.        ++..|+++|...+
T Consensus       140 ~~~~~~~~~~i~~~i~~~l~~--------------~-----~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        140 LVDDEELLELVEMEVRELLSE--------------Y-----DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CcchHHHHHHHHHHHHHHHHH--------------h-----CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            986543322 22233322211              0     01 124789999999983        4666666666554


Q ss_pred             H
Q 014354          313 Q  313 (426)
Q Consensus       313 ~  313 (426)
                      +
T Consensus       201 p  201 (394)
T PRK12736        201 P  201 (394)
T ss_pred             C
Confidence            4

>cd01875 RhoG RhoG subfamily

Probab=99.64  E-value=3.1e-15  Score=137.39  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=97.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|..|||||||+.+++...+.......+.       . .+...                       +..     
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-------~-~~~~~-----------------------~~~-----   46 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF-------D-NYSAQ-----------------------TAV-----   46 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE-------e-eeEEE-----------------------EEE-----
Confidence            36899999999999999999998765432211110       0 00000                       000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ....+.+.||||||+.++.       .+...+ -..++++|+|.|.....+   |..-...+...+.
T Consensus        47 -------------~~~~~~l~i~Dt~G~e~~~-------~l~~~~-~~~a~~~ilvydit~~~S---f~~~~~~w~~~i~  102 (191)
T cd01875          47 -------------DGRTVSLNLWDTAGQEEYD-------RLRTLS-YPQTNVFIICFSIASPSS---YENVRHKWHPEVC  102 (191)
T ss_pred             -------------CCEEEEEEEEECCCchhhh-------hhhhhh-ccCCCEEEEEEECCCHHH---HHHHHHHHHHHHH
Confidence                         0233678999999997752       222221 134789999999865332   2111111111121


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ..++|+|||.||+|+.......+.   +..+.         ........+..+.......+++++||++|.||.++|.
T Consensus       103 ~~~~~~piilvgNK~DL~~~~~~~~~---~~~~~---------~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~  170 (191)
T cd01875         103 HHCPNVPILLVGTKKDLRNDADTLKK---LKEQG---------QAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFA  170 (191)
T ss_pred             hhCCCCCEEEEEeChhhhcChhhHHH---Hhhcc---------CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHH
Confidence              247899999999999654321111   11000         0000011111111222335799999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      +|.+.+.
T Consensus       171 ~l~~~~~  177 (191)
T cd01875         171 EAVRAVL  177 (191)
T ss_pred             HHHHHHh
Confidence            9987663

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.64  E-value=1.9e-15  Score=134.20  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=68.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD  242 (426)
                      ..++.+|||||+..+.       .+.+.+ ...+|++++|+|.+...+...    ...++..+.+  .+.|+|+|+||+|
T Consensus        51 ~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~p~ilv~nK~D  118 (164)
T cd04101          51 TVELFIFDSAGQELYS-------DMVSNY-WESPSVFILVYDVSNKASFEN----CSRWVNKVRTASKHMPGVLVGNKMD  118 (164)
T ss_pred             EEEEEEEECCCHHHHH-------HHHHHH-hCCCCEEEEEEECcCHHHHHH----HHHHHHHHHHhCCCCCEEEEEECcc
Confidence            3688999999985541       122221 145799999999865322111    1122222222  3689999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      +..........  ...+.                       ...+.+++++||++|.|+.+++..|.+.+
T Consensus       119 l~~~~~~~~~~--~~~~~-----------------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         119 LADKAEVTDAQ--AQAFA-----------------------QANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cccccCCCHHH--HHHHH-----------------------HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            97653211110  01000                       01135689999999999999999987653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=131.52  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=113.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ....+-|+++|.+|||||||+|+|+++..-.           -++..|+.|                          ..+
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------rtSktPGrT--------------------------q~i   63 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------RTSKTPGRT--------------------------QLI   63 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCccee-----------ecCCCCCcc--------------------------cee
Confidence            4466789999999999999999999976211           155555554                          111


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccc----hhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~----~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                      ++|.              -+..+.|+|.||..=...    ....+..+.+++.. .....++++||+.+.....+     
T Consensus        64 Nff~--------------~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D-----  124 (200)
T COG0218          64 NFFE--------------VDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD-----  124 (200)
T ss_pred             EEEE--------------ecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH-----
Confidence            1211              113488999999743211    11123445555543 33578999999999988766     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ......+...++|+++|+||+|.++.....+....+....                 ..   .+.....++.+|+.++.|
T Consensus       125 ~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l-----------------~~---~~~~~~~~~~~ss~~k~G  184 (200)
T COG0218         125 REMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEEL-----------------KK---PPPDDQWVVLFSSLKKKG  184 (200)
T ss_pred             HHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHh-----------------cC---CCCccceEEEEecccccC
Confidence            2445667889999999999999999765433333332100                 00   011111288999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      ++++...|.+.+.+
T Consensus       185 i~~l~~~i~~~~~~  198 (200)
T COG0218         185 IDELKAKILEWLKE  198 (200)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876543

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.64  E-value=2.5e-15  Score=133.24  Aligned_cols=158  Identities=15%  Similarity=0.218  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||+|++++........       |..........+.                       .     .
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~~~~~~~~v~-----------------------~-----~   46 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQE-------STIGAAFLTQTVN-----------------------L-----D   46 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CccceeEEEEEEE-----------------------E-----C
Confidence            479999999999999999999887543110       0000000000000                       0     0


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                   .....+.+|||||+.++.       .....+ ...++++++|+|+....   .+... ..++..+. 
T Consensus        47 -------------~~~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~~~  101 (163)
T cd01860          47 -------------DTTVKFEIWDTAGQERYR-------SLAPMY-YRGAAAAIVVYDITSEE---SFEKA-KSWVKELQR  101 (163)
T ss_pred             -------------CEEEEEEEEeCCchHHHH-------HHHHHH-hccCCEEEEEEECcCHH---HHHHH-HHHHHHHHH
Confidence                         123578899999986541       111111 13479999999997432   22111 11222222 


Q ss_pred             --hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          229 --KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       229 --~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        ...+|+|+|+||+|+.......  ......+..                     . . ..+++++||++|.|+.++++
T Consensus       102 ~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd01860         102 NASPNIIIALVGNKADLESKRQVS--TEEAQEYAD---------------------E-N-GLLFFETSAKTGENVNELFT  156 (163)
T ss_pred             hCCCCCeEEEEEECccccccCcCC--HHHHHHHHH---------------------H-c-CCEEEEEECCCCCCHHHHHH
Confidence              2468899999999987532110  001111100                     1 1 25799999999999999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      +|.+.+
T Consensus       157 ~l~~~l  162 (163)
T cd01860         157 EIAKKL  162 (163)
T ss_pred             HHHHHh
Confidence            998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00154 Rab Rab family

Probab=99.64  E-value=3.6e-15  Score=130.21  Aligned_cols=154  Identities=20%  Similarity=0.261  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|++|||||||++++.+.......             .+ +......                  ....     ..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~-------------~~-t~~~~~~------------------~~~~-----~~   44 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDENY-------------KS-TIGVDFK------------------SKTI-----EI   44 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCcc-------------CC-ceeeeeE------------------EEEE-----EE
Confidence            6899999999999999999988755320             00 0000000                  0000     00


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh-
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK-  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~-  229 (426)
                                 ......+.+||+||+..+.       .+...+ ...+|++++|+|+...... ...   ..+...+.. 
T Consensus        45 -----------~~~~~~~~l~D~~g~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~~~-~~~---~~~~~~~~~~  101 (159)
T cd00154          45 -----------DGKTVKLQIWDTAGQERFR-------SITPSY-YRGAHGAILVYDITNRESF-ENL---DKWLKELKEY  101 (159)
T ss_pred             -----------CCEEEEEEEEecCChHHHH-------HHHHHH-hcCCCEEEEEEECCCHHHH-HHH---HHHHHHHHHh
Confidence                       0123678999999986541       111111 1347999999999762211 111   112222332 


Q ss_pred             --ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          230 --TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       230 --~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                        ...|+++|+||+|+..+...  ..+.+..+..                     .  ...+++.+||++|.|+.+++.+
T Consensus       102 ~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~sa~~~~~i~~~~~~  156 (159)
T cd00154         102 APENIPIILVGNKIDLEDQRQV--STEEAQQFAK---------------------E--NGLLFFETSAKTGENVEELFQS  156 (159)
T ss_pred             CCCCCcEEEEEEcccccccccc--cHHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHHHH
Confidence              35999999999999732211  1111111110                     1  2467999999999999999998


Q ss_pred             HH
Q 014354          308 VE  309 (426)
Q Consensus       308 l~  309 (426)
                      |.
T Consensus       157 i~  158 (159)
T cd00154         157 LA  158 (159)
T ss_pred             Hh
Confidence            75

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.64  E-value=1.9e-15  Score=143.30  Aligned_cols=89  Identities=21%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|+||+|||||+|+|++....             +..+++++    .              .+..|.+.       
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------v~~~~~tT----~--------------~~~~g~~~-------   43 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE-------------VAAYEFTT----L--------------TCVPGVLE-------   43 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCCCcc----c--------------cceEEEEE-------
Confidence            5899999999999999999987522             34445544    0              01112221       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA  211 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~  211 (426)
                                  ..+.++.+|||||+.+..... .....+...+  ..+|++++|+|++...
T Consensus        44 ------------~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~--~~ad~il~V~D~t~~~   91 (233)
T cd01896          44 ------------YKGAKIQLLDLPGIIEGAADGKGRGRQVIAVA--RTADLILMVLDATKPE   91 (233)
T ss_pred             ------------ECCeEEEEEECCCcccccccchhHHHHHHHhh--ccCCEEEEEecCCcch
Confidence                        244689999999997653211 1122222222  4479999999987543

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.64  E-value=2.4e-15  Score=130.71  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||+++|++......             ..+..+ .+.   .              ...+.      
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~-------------~~~~~~-~~~---~--------------~~~~~------   44 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITE-------------YKPGTT-RNY---V--------------TTVIE------   44 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCc-------------CCCCce-eee---e--------------EEEEE------
Confidence            5799999999999999999998863221             111111 000   0              00000      


Q ss_pred             ccHHHHHHHHHHHhcC--CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHH
Q 014354          150 TKFDEVISLIERRADH--LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSI  226 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~--~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~  226 (426)
                                   ..+  ..+.+|||||+.++..   .....   +  ..++.+++++|....+.. ..........+..
T Consensus        45 -------------~~~~~~~~~~~D~~G~~~~~~---~~~~~---~--~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~  103 (161)
T TIGR00231        45 -------------EDGKTYKFNLLDTAGQEDYRA---IRRLY---Y--RAVESSLRVFDIVILVLDVEEILEKQTKEIIH  103 (161)
T ss_pred             -------------ECCEEEEEEEEECCCcccchH---HHHHH---H--hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHH
Confidence                         122  5788999999866521   11111   1  123445555555433111 1111011111111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....+.|+++|+||+|+............+.                          .....+++++||+.|.|+.++++
T Consensus       104 ~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~sa~~~~gv~~~~~  157 (161)
T TIGR00231       104 HAESNVPIILVGNKIDLRDAKLKTHVAFLFA--------------------------KLNGEPIIPLSAETGKNIDSAFK  157 (161)
T ss_pred             hcccCCcEEEEEEcccCCcchhhHHHHHHHh--------------------------hccCCceEEeecCCCCCHHHHHH
Confidence            2222889999999999987541111111111                          12345699999999999999998


Q ss_pred             HHH
Q 014354          307 AVE  309 (426)
Q Consensus       307 ~l~  309 (426)
                      +|.
T Consensus       158 ~l~  160 (161)
T TIGR00231       158 IVE  160 (161)
T ss_pred             Hhh
Confidence            874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>CHL00071 tufA elongation factor Tu

Probab=99.63  E-value=4.5e-15  Score=151.98  Aligned_cols=169  Identities=18%  Similarity=0.188  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++...|+++|++|+|||||+++|++............     ........    .              ....|+.....
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~-----~~~~d~~~----~--------------e~~rg~T~~~~   66 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKK-----YDEIDSAP----E--------------EKARGITINTA   66 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccc-----cccccCCh----h--------------hhcCCEeEEcc
Confidence            4557899999999999999999998643211100000     00000000    0              00122221100


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      .  ..+         ..++.++.|+||||+.++.      ..+...+  ..+|++++|||+..+...++     ...+..
T Consensus        67 ~--~~~---------~~~~~~~~~iDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~g~~~qt-----~~~~~~  122 (409)
T CHL00071         67 H--VEY---------ETENRHYAHVDCPGHADYV------KNMITGA--AQMDGAILVVSAADGPMPQT-----KEHILL  122 (409)
T ss_pred             E--EEE---------ccCCeEEEEEECCChHHHH------HHHHHHH--HhCCEEEEEEECCCCCcHHH-----HHHHHH
Confidence            0  000         0245689999999985431      2222222  45799999999998887655     334555


Q ss_pred             HhhccCC-eEEEEecCCCCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCH
Q 014354          227 LYKTRLP-LVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       227 l~~~~~P-~IlVlNKiDl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv  301 (426)
                      +...++| +|+|+||+|++......+ +...+..+...              .     .+ ....+++++||++|.++
T Consensus       123 ~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~--------------~-----~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        123 AKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK--------------Y-----DFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH--------------h-----CCCCCcceEEEcchhhcccc
Confidence            6677899 668999999987553322 22233322211              0     01 11378999999999754

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.63  E-value=3.7e-15  Score=134.21  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++...       .. .....+|++|+|.|.....+   |......++..+.  ..++|+++|+||+|+
T Consensus        48 ~~~~i~Dt~G~~~~~~~-------~~-~~~~~a~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~piilv~nK~Dl  116 (173)
T cd04130          48 VRLQLCDTAGQDEFDKL-------RP-LCYPDTDVFLLCFSVVNPSS---FQNISEKWIPEIRKHNPKAPIILVGTQADL  116 (173)
T ss_pred             EEEEEEECCCChhhccc-------cc-cccCCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCCCCCEEEEeeChhh
Confidence            57889999999765211       11 11135799999999865332   2111111122222  246899999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      .......   ..+.   ..   .   ...+....+..+....+..+++++||++|.|+.++++.+.-
T Consensus       117 ~~~~~~~---~~~~---~~---~---~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         117 RTDVNVL---IQLA---RY---G---EKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             ccChhHH---HHHh---hc---C---CCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            7543210   0000   00   0   00001111111112233347999999999999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00876 Ras Ras family

Probab=99.63  E-value=1.8e-15  Score=133.12  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.+||+||+....      ......+  ..++++++|+|............-...+.........|+++|+||+|+..
T Consensus        47 ~~~~l~D~~g~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          47 YTLDILDTAGQEEFS------AMRDLYI--RQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEEEEEECCChHHHH------HHHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence            578899999986642      1111122  34689999999865322111111001111111124799999999999987


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ....  ..+....+..                     . + ..+++++||++|.|+.+++++|...
T Consensus       119 ~~~~--~~~~~~~~~~---------------------~-~-~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         119 ERQV--SKEEGKALAK---------------------E-W-GCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             ccee--cHHHHHHHHH---------------------H-c-CCcEEEeccCCCCCHHHHHHHHHhh
Confidence            3211  0111111110                     1 1 2579999999999999999998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04120 Rab12 Rab12 subfamily

Probab=99.63  E-value=2.7e-15  Score=139.16  Aligned_cols=162  Identities=18%  Similarity=0.219  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+++|..|||||||++++....+......              +..++....                .+..       
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~--------------Ti~~~~~~~----------------~i~~-------   44 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKS--------------GVGVDFKIK----------------TVEL-------   44 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCC--------------cceeEEEEE----------------EEEE-------
Confidence            589999999999999999998765432110              100000000                0000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                 ......+.||||+|+..+.       .+...+ -..++++|+|+|.+...+-.. ....+..+......
T Consensus        45 -----------~~~~v~l~iwDtaGqe~~~-------~l~~~y-~~~ad~iIlVfDvtd~~Sf~~-l~~w~~~i~~~~~~  104 (202)
T cd04120          45 -----------RGKKIRLQIWDTAGQERFN-------SITSAY-YRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE  104 (202)
T ss_pred             -----------CCEEEEEEEEeCCCchhhH-------HHHHHH-hcCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC
Confidence                       0123688999999997752       222222 135799999999876432211 11111111112234


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ++|+|||.||+|+.....+...  ....+                  +    .......++.+||++|.||.++|.+|..
T Consensus       105 ~~piilVgNK~DL~~~~~v~~~--~~~~~------------------a----~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120         105 DAELLLVGNKLDCETDREISRQ--QGEKF------------------A----QQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             CCcEEEEEECcccccccccCHH--HHHHH------------------H----HhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            6899999999999753321100  11100                  0    0112356899999999999999999987


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      .+.
T Consensus       161 ~~~  163 (202)
T cd04120         161 DIL  163 (202)
T ss_pred             HHH
Confidence            654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04116 Rab9 Rab9 subfamily

Probab=99.63  E-value=1.2e-15  Score=136.59  Aligned_cols=163  Identities=14%  Similarity=0.249  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|.+|||||||++++++..+.....             + +..++...                ..+..    
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~-------------~-~~~~~~~~----------------~~~~~----   49 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF-------------H-TIGVEFLN----------------KDLEV----   49 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC-------------C-ceeeEEEE----------------EEEEE----
Confidence            34689999999999999999999765432110             0 00000000                00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC--Cchh-hhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMT-FMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~-~~~~~l~~~  224 (426)
                                    ......+.||||||+.++.      ......+  ..+|++++|.|.....  .... +........
T Consensus        50 --------------~~~~~~l~i~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (170)
T cd04116          50 --------------DGHFVTLQIWDTAGQERFR------SLRTPFY--RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYA  107 (170)
T ss_pred             --------------CCeEEEEEEEeCCChHHHH------HhHHHHh--cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence                          0233578899999986641      1111122  3467888777765432  2211 111111111


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ......++|+++|+||+|+......   ......+..                      .+...+++++||++|.|+.++
T Consensus       108 ~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~----------------------~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116         108 DVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCR----------------------ENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             ccccCCCCcEEEEEECccccccccC---HHHHHHHHH----------------------HCCCCeEEEEECCCCCCHHHH
Confidence            1011246899999999998742211   111111110                      122346899999999999999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      +..+.+.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9988753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.63  E-value=1.9e-14  Score=127.12  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             CEEEEcCCCcccccchhc----hHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354          167 DYVLVDTPGQIEIFTWSA----SGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~----~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKi  241 (426)
                      .+.+|||||+........    ....+...+.. ...+++++++|.........     ..+...+...+.|+++|+||+
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-----~~~~~~l~~~~~~vi~v~nK~  120 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID-----LEMLDWLEELGIPFLVVLTKA  120 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-----HHHHHHHHHcCCCEEEEEEch
Confidence            789999999765311111    11112222222 23578899999876543322     223344556679999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      |+............+...                     +..++...+++++||+++.|+.+++++|.+.
T Consensus       121 D~~~~~~~~~~~~~~~~~---------------------l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         121 DKLKKSELAKALKEIKKE---------------------LKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hcCChHHHHHHHHHHHHH---------------------HHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            998765443333222211                     1113445689999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.63  E-value=5e-15  Score=132.98  Aligned_cols=162  Identities=19%  Similarity=0.267  Sum_probs=93.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|++|||||||++++++..+......       .+       .++..                 ...+..    
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~-------t~-------~~~~~-----------------~~~~~~----   46 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEA-------TI-------GVDFR-----------------ERTVEI----   46 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcccc-------ce-------eEEEE-----------------EEEEEE----
Confidence            36899999999999999999997664321110       00       00000                 000000    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH-H
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI-L  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~-l  227 (426)
                      .             .....+.||||||+.++.      ..+...+ ...+|++++|+|+....+..... ..+..+.. .
T Consensus        47 ~-------------~~~~~~~i~Dt~G~~~~~------~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~  105 (170)
T cd04115          47 D-------------GERIKVQLWDTAGQERFR------KSMVQHY-YRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHS  105 (170)
T ss_pred             C-------------CeEEEEEEEeCCChHHHH------HhhHHHh-hcCCCEEEEEEECCCHHHHHhHH-HHHHHHHHhc
Confidence            0             123678999999986541      1122211 13479999999997543322211 11111111 1


Q ss_pred             hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc---CCCHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGIEA  303 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~---g~gv~~  303 (426)
                      ...++|+|+|+||+|+....... .....+   .                      .. ...+++++||++   +.|+.+
T Consensus       106 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---~----------------------~~-~~~~~~e~Sa~~~~~~~~i~~  159 (170)
T cd04115         106 LPNEVPRILVGNKCDLREQIQVPTDLAQRF---A----------------------DA-HSMPLFETSAKDPSENDHVEA  159 (170)
T ss_pred             CCCCCCEEEEEECccchhhcCCCHHHHHHH---H----------------------HH-cCCcEEEEeccCCcCCCCHHH
Confidence            23468999999999987543211 111111   1                      11 236799999999   889999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      ++..+...+
T Consensus       160 ~f~~l~~~~  168 (170)
T cd04115         160 IFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHh
Confidence            998887644

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04126 Rab20 Rab20 subfamily

Probab=99.63  E-value=4.9e-15  Score=139.10  Aligned_cols=170  Identities=12%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||+++++...+...              .| +.                      ++.+....    
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~~--------------~~-Ti----------------------g~~~~~~~----   40 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKDT--------------VS-TV----------------------GGAFYLKQ----   40 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCC--------------CC-cc----------------------ceEEEEEE----
Confidence            689999999999999999998764310              00 10                      00000000    


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--h
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--Y  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--~  228 (426)
                                  ...+.+.||||||+..+.       .+...+ -..++++|+|+|.+...+-...   ...+..+.  .
T Consensus        41 ------------~~~~~l~iwDt~G~e~~~-------~l~~~~-~~~ad~~IlV~Dvt~~~Sf~~l---~~~~~~l~~~~   97 (220)
T cd04126          41 ------------WGPYNISIWDTAGREQFH-------GLGSMY-CRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTA   97 (220)
T ss_pred             ------------eeEEEEEEEeCCCcccch-------hhHHHH-hccCCEEEEEEECCCHHHHHHH---HHHHHHHHHhc
Confidence                        123678999999997652       122222 1357999999998764322111   11111111  2


Q ss_pred             hccCCeEEEEecCCCCChHhHH-------HH-----HHHHHHHHHHhccccchhhhHHHHhhh------hHhhhhcCCce
Q 014354          229 KTRLPLVLAFNKTDVAQHEFAL-------EW-----MQDFEVFQAAISSDHSYTSTLTNSLSL------ALDEFYKNLKS  290 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~-------~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~v  290 (426)
                      ..++|+|||.||+|+.......       ..     ...+. .        .....++++.+.      .+.. ....++
T Consensus        98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~-~--------~e~~~~a~~~~~~~~~~~~~~~-~~~~~~  167 (220)
T cd04126          98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVT-L--------EDAKAFYKRINKYKMLDEDLSP-AAEKMC  167 (220)
T ss_pred             CCCCcEEEEEECcccccccccccccccccccccccccccCC-H--------HHHHHHHHHhCccccccccccc-cccceE
Confidence            3468999999999997511000       00     00000 0        001111222110      0000 012579


Q ss_pred             EEeecccCCCHHHHHHHHHHHHHH
Q 014354          291 VGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       291 v~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +++||++|.||.++|..+.+.+.+
T Consensus       168 ~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         168 FETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999876654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04114 Rab30 Rab30 subfamily

Probab=99.63  E-value=5.7e-15  Score=131.83  Aligned_cols=161  Identities=16%  Similarity=0.212  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|++|||||||++++++.....+..       +.+       ..+..                 ...+.    
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~-----------------~~~~~----   50 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG-------ATI-------GVDFM-----------------IKTVE----   50 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------Cce-------eeEEE-----------------EEEEE----
Confidence            34789999999999999999999765432110       000       00000                 00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .            ......+.+|||||+..+.      ......+  ..+|++++|+|.....+... ....+..+..+
T Consensus        51 -~------------~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~  108 (169)
T cd04114          51 -I------------KGEKIKLQIWDTAGQERFR------SITQSYY--RSANALILTYDITCEESFRC-LPEWLREIEQY  108 (169)
T ss_pred             -E------------CCEEEEEEEEECCCcHHHH------HHHHHHh--cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence             0            0122467899999986541      1111222  34789999999865432111 11112222333


Q ss_pred             hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ...++|.++|+||+|+....... .....+.                         .. ...+++++||++|.|+.++++
T Consensus       109 ~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-------------------------~~-~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114         109 ANNKVITILVGNKIDLAERREVSQQRAEEFS-------------------------DA-QDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             CCCCCeEEEEEECcccccccccCHHHHHHHH-------------------------HH-cCCeEEEeeCCCCCCHHHHHH
Confidence            34578999999999987644321 1111111                         11 125689999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      .|...
T Consensus       163 ~i~~~  167 (169)
T cd04114         163 DLACR  167 (169)
T ss_pred             HHHHH
Confidence            98864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.63  E-value=1.3e-15  Score=136.62  Aligned_cols=116  Identities=15%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEe
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFN  239 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlN  239 (426)
                      .+..+.+|||||+..+.      ......+  ..++++|||+|++....... .   ...+..+.    ..++|++||+|
T Consensus        41 ~~~~~~i~D~~G~~~~~------~~~~~~~--~~a~~ii~V~D~s~~~s~~~-~---~~~l~~l~~~~~~~~~piliv~N  108 (167)
T cd04161          41 DKYEVCIFDLGGGANFR------GIWVNYY--AEAHGLVFVVDSSDDDRVQE-V---KEILRELLQHPRVSGKPILVLAN  108 (167)
T ss_pred             CCEEEEEEECCCcHHHH------HHHHHHH--cCCCEEEEEEECCchhHHHH-H---HHHHHHHHcCccccCCcEEEEEe
Confidence            34678999999986541      1111222  35799999999976432111 1   11111121    24789999999


Q ss_pred             cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC------CCHHHHHHHHHH
Q 014354          240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG------AGIEAYFKAVEE  310 (426)
Q Consensus       240 KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g------~gv~~l~~~l~~  310 (426)
                      |+|+.......++.+.+. +. .          +       .........++++||++|      .|+.+-++||.+
T Consensus       109 K~Dl~~~~~~~~i~~~~~-l~-~----------~-------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         109 KQDKKNALLGADVIEYLS-LE-K----------L-------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCCCcCCCCHHHHHHhcC-cc-c----------c-------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            999977543333332211 00 0          0       001111246888999998      899999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04111 Rab39 Rab39 subfamily

Probab=99.62  E-value=5.6e-15  Score=137.92  Aligned_cols=165  Identities=20%  Similarity=0.245  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |.+       .++....                 .+.    +.
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-------~ti-------~~d~~~~-----------------~i~----~~   47 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-------PTV-------GVDFFSR-----------------LIE----IE   47 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------cee-------ceEEEEE-----------------EEE----EC
Confidence            579999999999999999999876543211       111       0000000                 000    00


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHHHh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILY  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~l~  228 (426)
                      .            .....+.||||||+..+.       .+...+ ...+|++|+|+|..+..+-.. ....+. +.....
T Consensus        48 ~------------~~~~~l~i~Dt~G~~~~~-------~~~~~~-~~~~d~iilv~D~~~~~Sf~~-l~~~~~~i~~~~~  106 (211)
T cd04111          48 P------------GVRIKLQLWDTAGQERFR-------SITRSY-YRNSVGVLLVFDITNRESFEH-VHDWLEEARSHIQ  106 (211)
T ss_pred             C------------CCEEEEEEEeCCcchhHH-------HHHHHH-hcCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcC
Confidence            0            122578899999986541       122111 134799999999865322111 111111 111111


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ....|++||.||+|+.......  ......+.                      ..++ .+++++||++|.|+.+++++|
T Consensus       107 ~~~~~iilvgNK~Dl~~~~~v~--~~~~~~~~----------------------~~~~-~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111         107 PHRPVFILVGHKCDLESQRQVT--REEAEKLA----------------------KDLG-MKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             CCCCeEEEEEEccccccccccC--HHHHHHHH----------------------HHhC-CEEEEEeCCCCCCHHHHHHHH
Confidence            2356789999999997643211  01111111                      1122 679999999999999999999


Q ss_pred             HHHHHHH
Q 014354          309 EESAQEF  315 (426)
Q Consensus       309 ~~~~~~~  315 (426)
                      .+.+...
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            8877654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.62  E-value=6.2e-15  Score=135.01  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=68.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++.       .+...+ ...+|++++|+|.....+   |.. ...++..+.  ..++|+++|+||+|+
T Consensus        50 ~~l~i~D~~G~~~~~-------~~~~~~-~~~~d~iilv~d~~~~~s---~~~-~~~~~~~i~~~~~~~piilv~nK~Dl  117 (193)
T cd04118          50 VTLGIWDTAGSERYE-------AMSRIY-YRGAKAAIVCYDLTDSSS---FER-AKFWVKELQNLEEHCKIYLCGTKSDL  117 (193)
T ss_pred             EEEEEEECCCchhhh-------hhhHhh-cCCCCEEEEEEECCCHHH---HHH-HHHHHHHHHhcCCCCCEEEEEEcccc
Confidence            467799999986541       111111 135799999999865322   111 111222233  236899999999998


Q ss_pred             CChHhHH-HH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFAL-EW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ....... .. ......+..                     .  ...+++++||++|.|+.+++++|.+.+..
T Consensus       118 ~~~~~~~~~v~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         118 IEQDRSLRQVDFHDVQDFAD---------------------E--IKAQHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             cccccccCccCHHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            7542110 00 011111110                     1  13568999999999999999999876644

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.62  E-value=4.9e-15  Score=131.19  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++.       .+...+ ...++++++|+|+....+   +. ....+...+.  ..++|+|+|+||+|+
T Consensus        51 ~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~v~v~d~~~~~s---~~-~l~~~~~~~~~~~~~~p~iiv~nK~Dl  118 (162)
T cd04106          51 VRLMLWDTAGQEEFD-------AITKAY-YRGAQACILVFSTTDRES---FE-AIESWKEKVEAECGDIPMVLVQTKIDL  118 (162)
T ss_pred             EEEEEeeCCchHHHH-------HhHHHH-hcCCCEEEEEEECCCHHH---HH-HHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence            578999999986641       122221 135789999999865322   11 1111222222  247999999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ........  +....+.                      ..+ ..+++++||++|.|+++++++|..
T Consensus       119 ~~~~~v~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         119 LDQAVITN--EEAEALA----------------------KRL-QLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             ccccCCCH--HHHHHHH----------------------HHc-CCeEEEEECCCCCCHHHHHHHHHH
Confidence            76432110  1111111                      111 247999999999999999998865

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04169 RF3 RF3 subfamily

Probab=99.62  E-value=9.1e-15  Score=141.26  Aligned_cols=136  Identities=20%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      +.|+|+|++|+|||||+++|+.........+.+.+. +    ...++..+   ..   ..-.+.+...+..+..      
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~-~----~~~~t~~D---~~---~~e~~rg~si~~~~~~------   65 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKAR-K----SRKHATSD---WM---EIEKQRGISVTSSVMQ------   65 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceeccc-c----cCCCccCC---Cc---HHHHhCCCCeEEEEEE------
Confidence            579999999999999999999765443333222110 0    00011011   00   0011122111111111      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                        +         ..+++.+.||||||+.++.      ......+  ..+|++|+|+|+..+.....     ..++..+..
T Consensus        66 --~---------~~~~~~i~liDTPG~~df~------~~~~~~l--~~aD~~IlVvda~~g~~~~~-----~~i~~~~~~  121 (267)
T cd04169          66 --F---------EYRDCVINLLDTPGHEDFS------EDTYRTL--TAVDSAVMVIDAAKGVEPQT-----RKLFEVCRL  121 (267)
T ss_pred             --E---------eeCCEEEEEEECCCchHHH------HHHHHHH--HHCCEEEEEEECCCCccHHH-----HHHHHHHHh
Confidence              0         1356899999999997752      1122222  24699999999988765433     223344556


Q ss_pred             ccCCeEEEEecCCCCCh
Q 014354          230 TRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~  246 (426)
                      .++|.++++||+|+...
T Consensus       122 ~~~P~iivvNK~D~~~a  138 (267)
T cd04169         122 RGIPIITFINKLDREGR  138 (267)
T ss_pred             cCCCEEEEEECCccCCC
Confidence            68999999999998764

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04123 Rab21 Rab21 subfamily

Probab=99.62  E-value=3.1e-15  Score=131.94  Aligned_cols=113  Identities=18%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.+|||||+..+.       .+...+ ...++++++|+|.......... ...+..+......++|+++|+||+|+..
T Consensus        49 ~~~~~~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~  119 (162)
T cd04123          49 IDLAIWDTAGQERYH-------ALGPIY-YRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER  119 (162)
T ss_pred             EEEEEEECCchHHHH-------HhhHHH-hccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            468899999986642       122211 1347999999998654322111 1111111112223689999999999885


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      .....  ...+..+..                     .  ...+++++||++|.|+.+++++|...+
T Consensus       120 ~~~~~--~~~~~~~~~---------------------~--~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         120 QRVVS--KSEAEEYAK---------------------S--VGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             ccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            43210  011111110                     1  135689999999999999999987653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04128 Spg1 Spg1p

Probab=99.62  E-value=5.8e-15  Score=134.63  Aligned_cols=163  Identities=17%  Similarity=0.219  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|+|||||++++++..+.....       |.+       ..+...                    ....  . 
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~-------~T~-------g~~~~~--------------------~~i~--~-   44 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYI-------QTL-------GVNFME--------------------KTIS--I-   44 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCC-------Ccc-------ceEEEE--------------------EEEE--E-
Confidence            68999999999999999999876542111       111       000000                    0000  0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                 ......+.||||+|+..+.       .+... ....++++++|+|.++..+.... ...+..+......
T Consensus        45 -----------~~~~~~l~iwDt~G~~~~~-------~~~~~-~~~~a~~iilv~D~t~~~s~~~i-~~~~~~~~~~~~~  104 (182)
T cd04128          45 -----------RGTEITFSIWDLGGQREFI-------NMLPL-VCNDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKT  104 (182)
T ss_pred             -----------CCEEEEEEEEeCCCchhHH-------HhhHH-HCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCC
Confidence                       0123678999999997652       12222 12457999999998654322111 0111111111123


Q ss_pred             cCCeEEEEecCCCCCh---HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQH---EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ..| |+|+||+|+...   .....+......+                  +    ... ..+++++||++|.|++++|.+
T Consensus       105 ~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~------------------a----~~~-~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128         105 AIP-ILVGTKYDLFADLPPEEQEEITKQARKY------------------A----KAM-KAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             CCE-EEEEEchhccccccchhhhhhHHHHHHH------------------H----HHc-CCEEEEEeCCCCCCHHHHHHH
Confidence            456 789999999632   1111111111111                  1    112 257999999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      +.+.+.+
T Consensus       161 l~~~l~~  167 (182)
T cd04128         161 VLAKAFD  167 (182)
T ss_pred             HHHHHHh
Confidence            9887755

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=7.2e-15  Score=151.53  Aligned_cols=118  Identities=22%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiD  242 (426)
                      .+.++.|+||||+.++.      ..+...  ...+|++++|||+..+...++     ..++.++...++|. |+|+||+|
T Consensus       122 ~~~~i~~iDtPGh~~f~------~~~~~g--~~~aD~allVVda~~g~~~qt-----~e~l~~~~~~gip~iIvviNKiD  188 (447)
T PLN03127        122 AKRHYAHVDCPGHADYV------KNMITG--AAQMDGGILVVSAPDGPMPQT-----KEHILLARQVGVPSLVVFLNKVD  188 (447)
T ss_pred             CCeEEEEEECCCccchH------HHHHHH--HhhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEeec
Confidence            44689999999996641      122221  234899999999998876665     34555667788995 67899999


Q ss_pred             CCChHhHHHHH-HHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecc---cCCC-------HHHHHHHHHH
Q 014354          243 VAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV---SGAG-------IEAYFKAVEE  310 (426)
Q Consensus       243 l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~---~g~g-------v~~l~~~l~~  310 (426)
                      ++......+.. ..+..+...+                   .| ...++++++||+   +|.|       +..|+++|..
T Consensus       189 lv~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~  249 (447)
T PLN03127        189 VVDDEELLELVEMELRELLSFY-------------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE  249 (447)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH
Confidence            98644322222 1222211110                   11 124689999886   4544       5677777766


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      .++
T Consensus       250 ~lp  252 (447)
T PLN03127        250 YIP  252 (447)
T ss_pred             hCC
Confidence            554

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.62  E-value=5.6e-15  Score=151.10  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=74.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ...+.||||||+.++.      ..+...  ...+|++++|||+..+. ..++..     .+..+...+ .|+|+|+||+|
T Consensus        79 ~~~i~liDtPGh~~f~------~~~~~g--~~~aD~aIlVVDa~~g~~~~qt~e-----~l~~l~~~gi~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHETLM------ATMLSG--AALMDGALLVIAANEPCPQPQTKE-----HLMALEIIGIKNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHHHHH------HHHHHH--HHHCCEEEEEEECCCCccccchHH-----HHHHHHHcCCCeEEEEEEccc
Confidence            3578999999997652      112111  13579999999999876 444321     222333344 46899999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +............+..+...                    .+....+++++||++|.|+..|+++|...++
T Consensus       146 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       146 LVSKEKALENYEEIKEFVKG--------------------TVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             cCCHHHHHHHHHHHHhhhhh--------------------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            98765432222333221110                    1123467999999999999999999987655

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.61  E-value=2.6e-15  Score=159.81  Aligned_cols=115  Identities=26%  Similarity=0.330  Sum_probs=74.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +.++.+|||||+.++......+......+....+|++++|+|+++....       ++....+...++|+++|+||+|+.
T Consensus        40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~-------l~l~~ql~~~~~PiIIVlNK~Dl~  112 (591)
T TIGR00437        40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERN-------LYLTLQLLELGIPMILALNLVDEA  112 (591)
T ss_pred             CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhh-------HHHHHHHHhcCCCEEEEEehhHHH
Confidence            3578999999998864332222222233344568999999999763211       222233445689999999999986


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                      +......   +.+.+..                      . -+.+++++||++|+|++++++++.+..
T Consensus       113 ~~~~i~~---d~~~L~~----------------------~-lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       113 EKKGIRI---DEEKLEE----------------------R-LGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             HhCCChh---hHHHHHH----------------------H-cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5432211   1121111                      1 136899999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04110 Rab35 Rab35 subfamily

Probab=99.61  E-value=8.9e-15  Score=135.16  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=95.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ....|+|+|++|||||||++++.+..+.....       |       +..++....                .+...   
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~-------~-------t~~~~~~~~----------------~~~~~---   51 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI-------T-------TIGVDFKIR----------------TVEIN---   51 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------c-------cccceeEEE----------------EEEEC---
Confidence            35789999999999999999999876432110       0       100000000                00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .....+.||||||+..+.       .+...+- ..++++++|+|+....+   |.. ...++..+
T Consensus        52 ---------------~~~~~l~l~D~~G~~~~~-------~~~~~~~-~~a~~iilv~D~~~~~s---~~~-~~~~~~~i  104 (199)
T cd04110          52 ---------------GERVKLQIWDTAGQERFR-------TITSTYY-RGTHGVIVVYDVTNGES---FVN-VKRWLQEI  104 (199)
T ss_pred             ---------------CEEEEEEEEeCCCchhHH-------HHHHHHh-CCCcEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence                           122478899999986641       1222111 34689999999975432   111 11122222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .  ....|++||+||+|+.......  ......+..                     .  ...+++++||++|.||.+++
T Consensus       105 ~~~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110         105 EQNCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAG---------------------Q--MGISLFETSAKENINVEEMF  159 (199)
T ss_pred             HHhCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEECCCCcCHHHHH
Confidence            2  2358999999999987643211  011111100                     1  12579999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ++|...+..
T Consensus       160 ~~l~~~~~~  168 (199)
T cd04110         160 NCITELVLR  168 (199)
T ss_pred             HHHHHHHHH
Confidence            999887654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.61  E-value=1.9e-15  Score=133.45  Aligned_cols=172  Identities=19%  Similarity=0.219  Sum_probs=105.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +...+|+|+|.+|+|||||+|+++...+.......|-. |                                   +.+..
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIga-d-----------------------------------FltKe   50 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGA-D-----------------------------------FLTKE   50 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccch-h-----------------------------------heeeE
Confidence            45689999999999999999999999887654433210 0                                   00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEe--CCCCCCchhhhhhHHHH-
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPMTFMSNMLYA-  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVD--a~~~~~~~~~~~~~l~~-  223 (426)
                      +..+            .+-..++||||+|++++...+      ...+  ..+|++++|-|  ....+....-|...+.. 
T Consensus        51 v~Vd------------~~~vtlQiWDTAGQERFqsLg------~aFY--RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~q  110 (210)
T KOG0394|consen   51 VQVD------------DRSVTLQIWDTAGQERFQSLG------VAFY--RGADCCVLVYDVNNPKSFENLENWRKEFLIQ  110 (210)
T ss_pred             EEEc------------CeEEEEEEEecccHHHhhhcc------ccee--cCCceEEEEeecCChhhhccHHHHHHHHHHh
Confidence            0000            122578999999999873221      1111  23577766654  44555555555443311 


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+.-.-..+|+||+.||+|+.......--...              ...|+.+        -++.|++.+||+.+.+|.+
T Consensus       111 a~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~--------------Aq~WC~s--------~gnipyfEtSAK~~~NV~~  168 (210)
T KOG0394|consen  111 ASPQDPETFPFVILGNKIDVDGGKSRQVSEKK--------------AQTWCKS--------KGNIPYFETSAKEATNVDE  168 (210)
T ss_pred             cCCCCCCcccEEEEcccccCCCCccceeeHHH--------------HHHHHHh--------cCCceeEEecccccccHHH
Confidence            11111246999999999999763211000000              1112222        3568899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEFM  316 (426)
Q Consensus       304 l~~~l~~~~~~~~  316 (426)
                      .|..+.+.+....
T Consensus       169 AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  169 AFEEIARRALANE  181 (210)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999988776654

>cd01892 Miro2 Miro2 subfamily

Probab=99.61  E-value=6.3e-15  Score=132.53  Aligned_cols=162  Identities=15%  Similarity=0.198  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ++..+|+++|.+|||||||++++++..+. ....       |       +......  +              ..+..  
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-------~-------T~~~~~~--~--------------~~~~~--   49 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS-------P-------TIKPRYA--V--------------NTVEV--   49 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC-------C-------ccCcceE--E--------------EEEEE--
Confidence            46789999999999999999999987654 2111       1       1100000  0              00000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                         .             .....+++|||+|...+.       .+...+ -..+|++++|+|+....   .+.. ...+..
T Consensus        50 ---~-------------~~~~~l~~~d~~g~~~~~-------~~~~~~-~~~~d~~llv~d~~~~~---s~~~-~~~~~~  101 (169)
T cd01892          50 ---Y-------------GQEKYLILREVGEDEVAI-------LLNDAE-LAACDVACLVYDSSDPK---SFSY-CAEVYK  101 (169)
T ss_pred             ---C-------------CeEEEEEEEecCCccccc-------ccchhh-hhcCCEEEEEEeCCCHH---HHHH-HHHHHH
Confidence               0             122467899999987652       111111 14579999999986532   2211 112222


Q ss_pred             HHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          226 ILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       226 ~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .+. ..++|+++|+||+|+......  .......+.                      ..++...++++||++|.|+.++
T Consensus       102 ~~~~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892         102 KYFMLGEIPCLFVAAKADLDEQQQR--YEVQPDEFC----------------------RKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             HhccCCCCeEEEEEEcccccccccc--cccCHHHHH----------------------HHcCCCCCEEEEeccCccHHHH
Confidence            222 237899999999998654311  000111111                      1122234689999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      ++.|.+.+
T Consensus       158 f~~l~~~~  165 (169)
T cd01892         158 FTKLATAA  165 (169)
T ss_pred             HHHHHHHh
Confidence            99998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.61  E-value=9.6e-15  Score=139.58  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|||||||++++++..+.....       |       +  +  .+..              ...+. .     
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~-------p-------T--i--~d~~--------------~k~~~-i-----   43 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQYT-------P-------T--I--EDFH--------------RKLYS-I-----   43 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCC-------C-------C--h--hHhE--------------EEEEE-E-----
Confidence            68999999999999999999776542110       1       1  0  0000              00000 0     


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH---
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l---  227 (426)
                                 ....+.+.||||+|+..+.       .+.. .....+|++|+|+|.....+-.. ....+..+...   
T Consensus        44 -----------~~~~~~l~I~Dt~G~~~~~-------~~~~-~~~~~ad~iIlVfdv~~~~Sf~~-i~~~~~~I~~~k~~  103 (247)
T cd04143          44 -----------RGEVYQLDILDTSGNHPFP-------AMRR-LSILTGDVFILVFSLDNRESFEE-VCRLREQILETKSC  103 (247)
T ss_pred             -----------CCEEEEEEEEECCCChhhh-------HHHH-HHhccCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhhcc
Confidence                       0123678899999987652       1111 11234789999999875322111 01101111101   


Q ss_pred             ------hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          228 ------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       228 ------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                            ...++|+|||+||+|+......  ....+..+..                      ......++++||++|.|+
T Consensus       104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~----------------------~~~~~~~~evSAktg~gI  159 (247)
T cd04143         104 LKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVG----------------------GDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             cccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHH----------------------hcCCCEEEEEeCCCCCCH
Confidence                  1246899999999999753211  1111211110                      012356999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          302 EAYFKAVEESA  312 (426)
Q Consensus       302 ~~l~~~l~~~~  312 (426)
                      ++++.+|...+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.61  E-value=4.1e-15  Score=132.60  Aligned_cols=114  Identities=15%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.||||||+...+..     .....+  ..+|++|+|+|+....+... .......+....  ..++|+|+|+||+|+
T Consensus        47 ~~~~i~D~~g~~~~~~~-----~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl  118 (165)
T cd04146          47 VSLEILDTAGQQQADTE-----QLERSI--RWADGFVLVYSITDRSSFDE-ISQLKQLIREIKKRDREIPVILVGNKADL  118 (165)
T ss_pred             EEEEEEECCCCcccccc-----hHHHHH--HhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence            56889999999752110     111122  34699999999976432211 111111122222  347999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC-CCHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG-AGIEAYFKAVEESA  312 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g-~gv~~l~~~l~~~~  312 (426)
                      .....+..  .....+                  +    ..+ ..+++++||++| .|+.++|..|...+
T Consensus       119 ~~~~~v~~--~~~~~~------------------~----~~~-~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         119 LHYRQVST--EEGEKL------------------A----SEL-GCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             HHhCccCH--HHHHHH------------------H----HHc-CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            64321110  011100                  0    111 256899999999 59999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.61  E-value=7.3e-15  Score=151.29  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=67.0

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHHHHHhhccC-CeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRL-PLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNK  240 (426)
                      ++..+.||||||+.++.      ..+...  ...+|++++|||+..  +...++..     .+..+...+. |+|+|+||
T Consensus        82 ~~~~i~liDtpG~~~~~------~~~~~~--~~~aD~~ilVvDa~~~~~~~~~~~~-----~~~~~~~~~~~~iivviNK  148 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFV------KNMITG--ASQADAAVLVVAADDAGGVMPQTRE-----HVFLARTLGINQLIVAINK  148 (425)
T ss_pred             CCeEEEEEECCCcccch------hhHhhc--hhcCCEEEEEEEcccCCCCCcchHH-----HHHHHHHcCCCeEEEEEEc
Confidence            45789999999986642      111111  145799999999987  65554422     2223344454 58899999


Q ss_pred             CCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHH
Q 014354          241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       241 iDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +|+...  .......+.+..+...              .     .+ ....+++++||++|.|+.++.
T Consensus       149 ~Dl~~~~~~~~~~~~~~i~~~l~~--------------~-----g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        149 MDAVNYDEKRYEEVKEEVSKLLKM--------------V-----GYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             cccccccHHHHHHHHHHHHHHHHh--------------h-----CCCcCcceEEEeecccCCCccccc
Confidence            999862  2112222233222111              0     01 013679999999999998765

>cd04131 Rnd Rnd subfamily

Probab=99.61  E-value=8.8e-15  Score=132.97  Aligned_cols=170  Identities=14%  Similarity=0.108  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+.......+       .. .+...+                       ..      
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~-------~~-~~~~~~-----------------------~~------   44 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV-------FE-NYTASF-----------------------EI------   44 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce-------EE-EEEEEE-----------------------EE------
Confidence            469999999999999999999876543221111       00 000000                       00      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.||||||+..+.       .+... .-..++++|+|.|.+...+-....   ..+...+. 
T Consensus        45 ------------~~~~~~l~iwDt~G~~~~~-------~~~~~-~~~~a~~~ilvfdit~~~Sf~~~~---~~w~~~i~~  101 (178)
T cd04131          45 ------------DEQRIELSLWDTSGSPYYD-------NVRPL-CYPDSDAVLICFDISRPETLDSVL---KKWRGEIQE  101 (178)
T ss_pred             ------------CCEEEEEEEEECCCchhhh-------hcchh-hcCCCCEEEEEEECCChhhHHHHH---HHHHHHHHH
Confidence                        0133678999999987652       11111 113478999999986543321111   11111122 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYFK  306 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l~~  306 (426)
                       ..+.|+|||.||+|+......  . ..+   ... +     ...+....+.-+...++..+++.+||++|+| |.++|.
T Consensus       102 ~~~~~~iilVgnK~DL~~~~~~--~-~~~---~~~-~-----~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~  169 (178)
T cd04131         102 FCPNTKVLLVGCKTDLRTDLST--L-MEL---SHQ-R-----QAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFH  169 (178)
T ss_pred             HCCCCCEEEEEEChhhhcChhH--H-HHH---Hhc-C-----CCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHH
Confidence             247899999999998642110  0 000   000 0     0001111122222222324689999999995 999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      .+.+.
T Consensus       170 ~~~~~  174 (178)
T cd04131         170 VATMA  174 (178)
T ss_pred             HHHHH
Confidence            88874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.60  E-value=8e-15  Score=149.52  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=71.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD  242 (426)
                      .+.++.||||||+.++.      ..+..  ....+|++++|||+..+...++     ...+..+...++|.+ +|+||+|
T Consensus        73 ~~~~i~~iDtPGh~~f~------~~~~~--~~~~aD~~llVvda~~g~~~qt-----~e~l~~~~~~gi~~iivvvNK~D  139 (396)
T PRK12735         73 ANRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CCcEEEEEECCCHHHHH------HHHHh--hhccCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEecC
Confidence            44689999999986531      11211  1245899999999998776654     233445566789976 5799999


Q ss_pred             CCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCC----------CHHHHHHHHHH
Q 014354          243 VAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA----------GIEAYFKAVEE  310 (426)
Q Consensus       243 l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~----------gv~~l~~~l~~  310 (426)
                      +.......+. ...+..+...              .     .+. .+.+++++||++|.          |+..|+++|..
T Consensus       140 l~~~~~~~~~~~~ei~~~l~~--------------~-----~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        140 MVDDEELLELVEMEVRELLSK--------------Y-----DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS  200 (396)
T ss_pred             CcchHHHHHHHHHHHHHHHHH--------------c-----CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence            9864332222 2233322211              0     011 24789999999995          45566666655


Q ss_pred             HH
Q 014354          311 SA  312 (426)
Q Consensus       311 ~~  312 (426)
                      .+
T Consensus       201 ~~  202 (396)
T PRK12735        201 YI  202 (396)
T ss_pred             cC
Confidence            43

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=3.2e-15  Score=149.89  Aligned_cols=173  Identities=22%  Similarity=0.187  Sum_probs=113.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+.+..|+|+|+||||||||||+|++..+++            |+..|+||    ||.+.+              .++  
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI------------VSpv~GTT----RDaiea--------------~v~--  312 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI------------VSPVPGTT----RDAIEA--------------QVT--  312 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE------------eCCCCCcc----hhhhee--------------Eee--
Confidence            3467899999999999999999999998775            89999999    877631              122  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                       -.++.+.|+||+|+.+-.........+.+..++ ..+|++++|||+..+....+..     ++
T Consensus       313 -----------------~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~-----i~  370 (531)
T KOG1191|consen  313 -----------------VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLK-----IA  370 (531)
T ss_pred             -----------------cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchH-----HH
Confidence                             256899999999998831111122223333333 4589999999997765554422     22


Q ss_pred             HHHh------h------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCC-ceE
Q 014354          225 SILY------K------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSV  291 (426)
Q Consensus       225 ~~l~------~------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~vv  291 (426)
                      +.+.      .      ...|.++|.||+|+..+-....+.-... ..                     ....+.. .++
T Consensus       371 ~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~-~~---------------------~~~~~~~~i~~  428 (531)
T KOG1191|consen  371 RILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVY-PS---------------------AEGRSVFPIVV  428 (531)
T ss_pred             HHHHHhccceEEEeccccccceEEEechhhccCccccccCCceec-cc---------------------cccCcccceEE
Confidence            2222      1      2368899999999988721101100000 00                     0001122 355


Q ss_pred             EeecccCCCHHHHHHHHHHHHHH
Q 014354          292 GVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       292 ~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .+||++++|+..|..++......
T Consensus       429 ~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  429 EVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             EeeechhhhHHHHHHHHHHHHHH
Confidence            59999999999999999876554

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.60  E-value=1.3e-14  Score=132.42  Aligned_cols=172  Identities=13%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|.+|+|||||+++++...+.......+       .. .+...+                       ..    
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~-------~~-~~~~~~-----------------------~~----   48 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------FE-NYTASF-----------------------EI----   48 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce-------ee-eeEEEE-----------------------EE----
Confidence            34689999999999999999999876543221111       00 000000                       00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||+|+.++.       .+... .-..+|++++|.|.+...+-....   ..+...+
T Consensus        49 --------------~~~~~~l~iwDtaG~e~~~-------~~~~~-~~~~ad~~ilvyDit~~~Sf~~~~---~~w~~~i  103 (182)
T cd04172          49 --------------DTQRIELSLWDTSGSPYYD-------NVRPL-SYPDSDAVLICFDISRPETLDSVL---KKWKGEI  103 (182)
T ss_pred             --------------CCEEEEEEEEECCCchhhH-------hhhhh-hcCCCCEEEEEEECCCHHHHHHHH---HHHHHHH
Confidence                          0233678999999997652       12211 123479999999986543221110   1111222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAY  304 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l  304 (426)
                      .  ..+.|+|||.||+|+......  .. .   +... +     ...+....+..+....+..+++.+||++|.| |.++
T Consensus       104 ~~~~~~~piilVgNK~DL~~~~~~--~~-~---~~~~-~-----~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~  171 (182)
T cd04172         104 QEFCPNTKMLLVGCKSDLRTDLTT--LV-E---LSNH-R-----QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI  171 (182)
T ss_pred             HHHCCCCCEEEEeEChhhhcChhh--HH-H---HHhc-C-----CCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHH
Confidence            2  236899999999998642110  00 0   0000 0     0001111122222222334799999999998 9999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      |..+...
T Consensus       172 F~~~~~~  178 (182)
T cd04172         172 FHVATLA  178 (182)
T ss_pred             HHHHHHH
Confidence            9988774

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.60  E-value=2.8e-15  Score=140.77  Aligned_cols=108  Identities=18%  Similarity=0.242  Sum_probs=63.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhcc-CCeE
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTR-LPLV  235 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~-~P~I  235 (426)
                      ++..+.||||||+.++.      ..+...  ...+|++|+|||+..+       ...+.     ...+..+...+ .|+|
T Consensus        75 ~~~~i~liDtpG~~~~~------~~~~~~--~~~~d~~i~VvDa~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ii  141 (219)
T cd01883          75 EKYRFTILDAPGHRDFV------PNMITG--ASQADVAVLVVDARKGEFEAGFEKGGQT-----REHALLARTLGVKQLI  141 (219)
T ss_pred             CCeEEEEEECCChHHHH------HHHHHH--hhhCCEEEEEEECCCCccccccccccch-----HHHHHHHHHcCCCeEE
Confidence            56789999999986541      111111  2457999999999874       22222     11222233444 5788


Q ss_pred             EEEecCCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       236 lVlNKiDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      +|+||+|+...    .....+...+..+...+              +    -.....+++++||++|.|+.
T Consensus       142 ivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~--------------~----~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         142 VAVNKMDDVTVNWSEERYDEIKKELSPFLKKV--------------G----YNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEEEccccccccccHHHHHHHHHHHHHHHHHc--------------C----CCcCCceEEEeecCcCCCCC
Confidence            89999999842    22223333332211110              0    00113679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04125 RabA_like RabA-like subfamily

Probab=99.60  E-value=1.1e-14  Score=133.06  Aligned_cols=116  Identities=13%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+..+.       .+...+ ...+|++++|+|.....+-.. ....+...........|.|+|+||+|+..
T Consensus        49 ~~~~i~Dt~g~~~~~-------~~~~~~-~~~~d~iilv~d~~~~~s~~~-i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~  119 (188)
T cd04125          49 IKLQIWDTNGQERFR-------SLNNSY-YRGAHGYLLVYDVTDQESFEN-LKFWINEINRYARENVIKVIVANKSDLVN  119 (188)
T ss_pred             EEEEEEECCCcHHHH-------hhHHHH-ccCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence            578899999986541       111111 134799999999865332111 11111111112223579999999999875


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      ......  .....+.                      ... ..+++.+||++|.|+.+++.+|.+.+...
T Consensus       120 ~~~v~~--~~~~~~~----------------------~~~-~~~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         120 NKVVDS--NIAKSFC----------------------DSL-NIPFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             cccCCH--HHHHHHH----------------------HHc-CCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            432110  0001000                      111 34799999999999999999998877653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.60  E-value=1.4e-14  Score=149.35  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHHHHHHHhhccC-CeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++.      ..+...  ...+|++++|||+..+ ..+++.     ..+..+...++ |.|+|+||+|+
T Consensus       117 ~~i~~IDtPGH~~fi------~~m~~g--~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHDILM------ATMLNG--AAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEecccc
Confidence            478999999986541      222222  2457999999999975 455442     22333444455 47889999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +......+....+..+...                    .+..+.++|++||++|.|++.|+++|.+.++.
T Consensus       184 v~~~~~~~~~~ei~~~l~~--------------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        184 VKEAQAQDQYEEIRNFVKG--------------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             cCHHHHHHHHHHHHHHHHh--------------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            9766544444444432211                    12345789999999999999999999876653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.60  E-value=5.7e-15  Score=153.51  Aligned_cols=110  Identities=17%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ++.+++||||||+.++.      ..+...  ...+|++|+|||+..+...++..     .+.++...+ .|+|+|+||+|
T Consensus       105 ~~~~i~~iDTPGh~~f~------~~~~~~--l~~aD~allVVDa~~G~~~qt~~-----~~~l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        105 EKRKFIIADTPGHEQYT------RNMATG--ASTCDLAILLIDARKGVLDQTRR-----HSFIATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             CCcEEEEEECCCcHHHH------HHHHHH--HhhCCEEEEEEECCCCccccchH-----HHHHHHHhCCCceEEEEEeec
Confidence            45789999999976531      122222  25579999999999988765522     122223333 46888999999


Q ss_pred             CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ++...  ....+...+..+...              +     .+..+.++|++||++|.|+..+.
T Consensus       172 ~~~~~~~~~~~i~~~l~~~~~~--------------~-----~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        172 LVDYSEEVFERIREDYLTFAEQ--------------L-----PGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             cccchhHHHHHHHHHHHHHHHh--------------c-----CCCCCceEEEEEeecCCCccccc
Confidence            98532  222233333221111              0     11235789999999999998754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.60  E-value=2e-14  Score=124.65  Aligned_cols=140  Identities=20%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|.|+|+.|||||||+++|.+......+                |.                       .+.       
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~~K----------------Tq-----------------------~i~-------   35 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----------------TQ-----------------------AIE-------   35 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCcCc----------------cc-----------------------eeE-------
Confidence            36999999999999999999997633110                11                       001       


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                      +.=.+|||||-.--  ++.+...+..  .+..+|+|++|.|+.........        .+...
T Consensus        36 ----------------~~~~~IDTPGEyiE--~~~~y~aLi~--ta~dad~V~ll~dat~~~~~~pP--------~fa~~   87 (143)
T PF10662_consen   36 ----------------YYDNTIDTPGEYIE--NPRFYHALIV--TAQDADVVLLLQDATEPRSVFPP--------GFASM   87 (143)
T ss_pred             ----------------ecccEEECChhhee--CHHHHHHHHH--HHhhCCEEEEEecCCCCCccCCc--------hhhcc
Confidence                            11136999994221  1111122211  23568999999999876543110        11233


Q ss_pred             ccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      .+.|+|-|+||+|+.+ .+.+....+.+   ..                       .+...+|.||+.+|+|+++|+++|
T Consensus        88 f~~pvIGVITK~Dl~~~~~~i~~a~~~L---~~-----------------------aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   88 FNKPVIGVITKIDLPSDDANIERAKKWL---KN-----------------------AGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             cCCCEEEEEECccCccchhhHHHHHHHH---HH-----------------------cCCCCeEEEECCCCcCHHHHHHHH
Confidence            4789999999999994 33222221111   11                       133468999999999999999988


Q ss_pred             H
Q 014354          309 E  309 (426)
Q Consensus       309 ~  309 (426)
                      .
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            5

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03110 Rab GTPase; Provisional

Probab=99.60  E-value=1.2e-14  Score=136.27  Aligned_cols=161  Identities=17%  Similarity=0.184  Sum_probs=97.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|++|||||||+++|++..+.....       |       +..++...                 ..+.    
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~-------~-------t~g~~~~~-----------------~~v~----   55 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-------S-------TIGVEFAT-----------------RTLQ----   55 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------C-------ceeEEEEE-----------------EEEE----
Confidence            44689999999999999999999876432110       0       00000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .            ......+.||||||+.++.       .+...+- ..++++|+|+|.........    ...++..+
T Consensus        56 -~------------~~~~~~l~l~Dt~G~~~~~-------~~~~~~~-~~~~~~ilv~d~~~~~s~~~----~~~~~~~~  110 (216)
T PLN03110         56 -V------------EGKTVKAQIWDTAGQERYR-------AITSAYY-RGAVGALLVYDITKRQTFDN----VQRWLREL  110 (216)
T ss_pred             -E------------CCEEEEEEEEECCCcHHHH-------HHHHHHh-CCCCEEEEEEECCChHHHHH----HHHHHHHH
Confidence             0            0123578999999986641       2222221 34789999999865332111    11222223


Q ss_pred             h---hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .   ..++|+++|+||+|+....... +....+.                         .. ...+++++||++|.|+.+
T Consensus       111 ~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~-------------------------~~-~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110        111 RDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA-------------------------EK-EGLSFLETSALEATNVEK  164 (216)
T ss_pred             HHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH-------------------------HH-cCCEEEEEeCCCCCCHHH
Confidence            2   3478999999999986543211 1111110                         11 246799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|...+..
T Consensus       165 lf~~l~~~i~~  175 (216)
T PLN03110        165 AFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999887765

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.60  E-value=5.8e-15  Score=159.03  Aligned_cols=108  Identities=20%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ++.+++||||||+.++.      ..+..  ....+|++++|||+..+..+++.     ..+.++...+ .|+|+|+||+|
T Consensus       102 ~~~~~~liDtPG~~~f~------~~~~~--~~~~aD~~llVvda~~g~~~~t~-----e~~~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        102 PKRKFIVADTPGHEQYT------RNMVT--GASTADLAIILVDARKGVLTQTR-----RHSFIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             CCceEEEEECCChHHHH------HHHHH--HHHhCCEEEEEEECCCCccccCH-----HHHHHHHHhCCCeEEEEEEecc
Confidence            55789999999986541      11222  12457999999999988776542     2222334444 46788999999


Q ss_pred             CCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          243 VAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       243 l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ++..  .....+...+..+...              +      .+...++|++||++|.|+.++
T Consensus       169 ~~~~~~~~~~~i~~~i~~~~~~--------------~------~~~~~~iipiSA~~g~ni~~~  212 (632)
T PRK05506        169 LVDYDQEVFDEIVADYRAFAAK--------------L------GLHDVTFIPISALKGDNVVTR  212 (632)
T ss_pred             cccchhHHHHHHHHHHHHHHHH--------------c------CCCCccEEEEecccCCCcccc
Confidence            9852  2222232333222111              0      123467999999999999854

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.59  E-value=4.1e-15  Score=133.09  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=66.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-hccCCeEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-~~~~P~IlVlNKiD  242 (426)
                      ++..+.||||||+.++..      .....+  ..+|++|+|+|+.....   +......+...+. ..++|+++|+||+|
T Consensus        42 ~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~D  110 (164)
T cd04162          42 QDAIMELLEIGGSQNLRK------YWKRYL--SGSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQD  110 (164)
T ss_pred             CCeEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence            346899999999976521      111122  34699999999876432   1111111112222 25799999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc------CCCHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS------GAGIEAYFKAVE  309 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~------g~gv~~l~~~l~  309 (426)
                      +........+...+. +.           .+.+         .....++++||++      ++||.++|+.+.
T Consensus       111 l~~~~~~~~i~~~~~-~~-----------~~~~---------~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         111 LPAARSVQEIHKELE-LE-----------PIAR---------GRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             CcCCCCHHHHHHHhC-Ch-----------hhcC---------CCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence            876543222221111 00           0000         0124578888888      999999998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04148 RGK RGK subfamily

Probab=99.59  E-value=1.1e-14  Score=136.92  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh----ccCCeEEEEec
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNK  240 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~----~~~P~IlVlNK  240 (426)
                      ...+.||||||+..         .+...+....+|++++|+|+....+   |... ..++..+..    .++|+|||+||
T Consensus        49 ~~~l~i~Dt~G~~~---------~~~~~~~~~~ad~iilV~d~td~~S---~~~~-~~~~~~l~~~~~~~~~piilV~NK  115 (221)
T cd04148          49 ESTLVVIDHWEQEM---------WTEDSCMQYQGDAFVVVYSVTDRSS---FERA-SELRIQLRRNRQLEDRPIILVGNK  115 (221)
T ss_pred             EEEEEEEeCCCcch---------HHHhHHhhcCCCEEEEEEECCCHHH---HHHH-HHHHHHHHHhcCCCCCCEEEEEEC
Confidence            36789999999862         1111111115799999999976432   2111 112222222    46899999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +|+.......  .+....+.                      ..+ ..+++++||++|.||.+++++|...+..
T Consensus       116 ~Dl~~~~~v~--~~~~~~~a----------------------~~~-~~~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         116 SDLARSREVS--VQEGRACA----------------------VVF-DCKFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             hhccccceec--HHHHHHHH----------------------HHc-CCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            9987653211  00011110                      111 2468999999999999999999887653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04117 Rab15 Rab15 subfamily

Probab=99.59  E-value=1.4e-14  Score=128.98  Aligned_cols=111  Identities=17%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||...+.       .+...+ ...+|++++|+|.....+-.. ....+.........++|+++|.||+|+..
T Consensus        49 ~~l~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  119 (161)
T cd04117          49 VRIQIWDTAGQERYQ-------TITKQY-YRRAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPEGVQKILIGNKADEEQ  119 (161)
T ss_pred             EEEEEEeCCCcHhHH-------hhHHHH-hcCCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence            578899999986642       111111 135799999999865322111 11111111112234689999999999875


Q ss_pred             hHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          246 HEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       246 ~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      ...+. .....+                         ...+ ..+++++||++|.|+.++|.+|.+.
T Consensus       120 ~~~v~~~~~~~~-------------------------~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         120 KRQVGDEQGNKL-------------------------AKEY-GMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ccCCCHHHHHHH-------------------------HHHc-CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            43211 111111                         0111 2578999999999999999998753

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.59  E-value=1.2e-14  Score=148.74  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=68.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccC-CeEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiD  242 (426)
                      ++.++.||||||+.++.      ..+...  ...+|++++|||+..+..+++..     .+.++...+. ++|+|+||+|
T Consensus        78 ~~~~~~liDtPGh~~f~------~~~~~~--~~~aD~allVVda~~G~~~qt~~-----~~~~~~~~~~~~iivviNK~D  144 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYT------RNMATG--ASTADLAVLLVDARKGVLEQTRR-----HSYIASLLGIRHVVLAVNKMD  144 (406)
T ss_pred             CCeEEEEEeCCCHHHHH------HHHHHH--HhhCCEEEEEEECCCCCccccHH-----HHHHHHHcCCCcEEEEEEecc
Confidence            45689999999987652      122222  24579999999999988776532     2333444445 4788999999


Q ss_pred             CCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +....  ....+...+..+...              +      .+...++|++||++|.|+..+
T Consensus       145 ~~~~~~~~~~~i~~~~~~~~~~--------------~------~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       145 LVDYDEEVFENIKKDYLAFAEQ--------------L------GFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             cccchHHHHHHHHHHHHHHHHH--------------c------CCCCccEEEeecccCCCCccc
Confidence            98532  112222222222111              0      123467999999999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04133 Rop_like Rop subfamily

Probab=99.59  E-value=1.8e-14  Score=130.80  Aligned_cols=169  Identities=17%  Similarity=0.133  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|+|||||+.+++...+.......       +.. .+..                       .+..      
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~T-------i~~-~~~~-----------------------~~~~------   44 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-------VFD-NFSA-----------------------NVSV------   44 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCc-------cee-eeEE-----------------------EEEE------
Confidence            46999999999999999999987654322111       100 0000                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ....+.+.||||+|+.++..       +...+ -..++++|+|.|.....+-   ......+...+. 
T Consensus        45 ------------~~~~v~l~i~Dt~G~~~~~~-------~~~~~-~~~a~~~ilvyd~~~~~Sf---~~~~~~w~~~i~~  101 (176)
T cd04133          45 ------------DGNTVNLGLWDTAGQEDYNR-------LRPLS-YRGADVFVLAFSLISRASY---ENVLKKWVPELRH  101 (176)
T ss_pred             ------------CCEEEEEEEEECCCCccccc-------cchhh-cCCCcEEEEEEEcCCHHHH---HHHHHHHHHHHHH
Confidence                        01336889999999987631       11111 1346899999998654332   111011122222 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|+|||.||+|+......  .....            ....+..+.+..+...++...++.+||++|.||+++|+.
T Consensus       102 ~~~~~piilvgnK~Dl~~~~~~--~~~~~------------~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~  167 (176)
T cd04133         102 YAPNVPIVLVGTKLDLRDDKQY--LADHP------------GASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA  167 (176)
T ss_pred             hCCCCCEEEEEeChhhccChhh--hhhcc------------CCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence             247899999999999653210  00000            000000111111111122235899999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      +.+.+
T Consensus       168 ~~~~~  172 (176)
T cd04133         168 AIKVV  172 (176)
T ss_pred             HHHHH
Confidence            98764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.59  E-value=7.8e-15  Score=156.16  Aligned_cols=112  Identities=17%  Similarity=0.260  Sum_probs=74.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.||||||+.++.      ..+...+  ..+|++|+|+|+..+...++..     .+..+...++|.|+|+||+|+..
T Consensus        70 ~~l~liDTPG~~dF~------~~v~~~l--~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        70 YVLNLIDTPGHVDFS------YEVSRSL--AACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS  136 (595)
T ss_pred             EEEEEEECCCcHHHH------HHHHHHH--HhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence            678999999998862      1222223  3479999999999887665532     12223346889999999999865


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ... ......+....                 +      ..+..++++||++|.|+.+|+++|.+.+|.
T Consensus       137 ~~~-~~~~~el~~~l-----------------g------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       137 ADP-ERVKKEIEEVI-----------------G------LDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             cCH-HHHHHHHHHHh-----------------C------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            321 11212221100                 0      112358999999999999999999887764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.58  E-value=1.9e-14  Score=146.64  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD  242 (426)
                      ++.++.|+||||+.++.      ..+..  ....+|++++|||+..+...++     ..++.++...++|.+ +++||+|
T Consensus        73 ~~~~i~~iDtPG~~~f~------~~~~~--~~~~aD~~llVVDa~~g~~~qt-----~~~~~~~~~~g~p~iiVvvNK~D  139 (396)
T PRK00049         73 EKRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCD  139 (396)
T ss_pred             CCeEEEEEECCCHHHHH------HHHHh--hhccCCEEEEEEECCCCCchHH-----HHHHHHHHHcCCCEEEEEEeecC
Confidence            45689999999985431      11111  1245899999999998877655     334455667789986 5899999


Q ss_pred             CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCC----------CHHHHHHHHHH
Q 014354          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA----------GIEAYFKAVEE  310 (426)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~----------gv~~l~~~l~~  310 (426)
                      +.......+ +...+..+...              +     .+ ..+++++++||++|.          |+..|+++|..
T Consensus       140 ~~~~~~~~~~~~~~i~~~l~~--------------~-----~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~  200 (396)
T PRK00049        140 MVDDEELLELVEMEVRELLSK--------------Y-----DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS  200 (396)
T ss_pred             CcchHHHHHHHHHHHHHHHHh--------------c-----CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence            986443221 22233222211              0     11 135789999999985          44555555555


Q ss_pred             H
Q 014354          311 S  311 (426)
Q Consensus       311 ~  311 (426)
                      .
T Consensus       201 ~  201 (396)
T PRK00049        201 Y  201 (396)
T ss_pred             c
Confidence            4

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.58  E-value=4e-14  Score=133.90  Aligned_cols=175  Identities=15%  Similarity=0.131  Sum_probs=96.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|.+|||||+|++++++..+.......+       . ..+...+                       ..    
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi-------~-~~~~~~i-----------------------~~----   56 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-------F-ENYTAGL-----------------------ET----   56 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce-------e-eeeEEEE-----------------------EE----
Confidence            34689999999999999999999876543221111       0 0000000                       00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+..+.       .+...+ -..++++|+|.|.+...+   |......+...+
T Consensus        57 --------------~~~~v~l~iwDTaG~e~~~-------~~~~~~-~~~ad~vIlVyDit~~~S---f~~~~~~w~~~i  111 (232)
T cd04174          57 --------------EEQRVELSLWDTSGSPYYD-------NVRPLC-YSDSDAVLLCFDISRPET---VDSALKKWKAEI  111 (232)
T ss_pred             --------------CCEEEEEEEEeCCCchhhH-------HHHHHH-cCCCcEEEEEEECCChHH---HHHHHHHHHHHH
Confidence                          0234688999999987652       122211 135799999999975432   221111111222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAY  304 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~l  304 (426)
                      .  ..+.|+|||+||+|+......  ... +   ...   .   ...+....+..+....+...++.+||++|. ||.++
T Consensus       112 ~~~~~~~piilVgNK~DL~~~~~~--~~~-l---~~~---~---~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~  179 (232)
T cd04174         112 MDYCPSTRILLIGCKTDLRTDLST--LME-L---SNQ---K---QAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSI  179 (232)
T ss_pred             HHhCCCCCEEEEEECcccccccch--hhh-h---ccc---c---CCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHH
Confidence            2  236899999999998642110  000 0   000   0   000011111111122222358999999998 89999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      |..+......
T Consensus       180 F~~~~~~~~~  189 (232)
T cd04174         180 FRSASLLCLN  189 (232)
T ss_pred             HHHHHHHHHH
Confidence            9998876543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.58  E-value=1.6e-14  Score=135.71  Aligned_cols=171  Identities=18%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |.+.. .+..                       .+..      
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~-------pTi~~-~~~~-----------------------~~~~------   44 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYV-------PTVFE-NYTA-----------------------SFEI------   44 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccC-------Ccccc-ceEE-----------------------EEEE------
Confidence            479999999999999999999876543221       11100 0000                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--  227 (426)
                                  ....+.+.||||+|+..+.       .+... .-..+|++|+|+|.....+   |......+...+  
T Consensus        45 ------------~~~~v~L~iwDt~G~e~~~-------~l~~~-~~~~~d~illvfdis~~~S---f~~i~~~w~~~~~~  101 (222)
T cd04173          45 ------------DKRRIELNMWDTSGSSYYD-------NVRPL-AYPDSDAVLICFDISRPET---LDSVLKKWQGETQE  101 (222)
T ss_pred             ------------CCEEEEEEEEeCCCcHHHH-------HHhHH-hccCCCEEEEEEECCCHHH---HHHHHHHHHHHHHh
Confidence                        0233678899999997652       11111 1245799999999875422   211111111111  


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYFK  306 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l~~  306 (426)
                      ...+.|+|||+||+|+......   ...+   ...      ....+....+..+....+..+++.+||+++.+ |.++|.
T Consensus       102 ~~~~~piiLVgnK~DL~~~~~~---~~~~---~~~------~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~  169 (222)
T cd04173         102 FCPNAKVVLVGCKLDMRTDLAT---LREL---SKQ------RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFH  169 (222)
T ss_pred             hCCCCCEEEEEECcccccchhh---hhhh---hhc------cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHH
Confidence            1347899999999999754211   0000   000      00011112222222333445799999999984 999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      .+....
T Consensus       170 ~~~~~~  175 (222)
T cd04173         170 VATVAS  175 (222)
T ss_pred             HHHHHH
Confidence            888764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04167 Snu114p Snu114p subfamily

Probab=99.58  E-value=1.8e-14  Score=134.65  Aligned_cols=67  Identities=25%  Similarity=0.347  Sum_probs=46.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+.+.||||||+.++.      ......+  ..+|++|+|+|+..+.....     ..++..+...++|+++|+||+|++
T Consensus        70 ~~~i~iiDtpG~~~f~------~~~~~~~--~~aD~~llVvD~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          70 SYLFNIIDTPGHVNFM------DEVAAAL--RLSDGVVLVVDVVEGVTSNT-----ERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEEECCCCcchH------HHHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcccC
Confidence            4678999999998752      1122222  35799999999987765432     122333444569999999999987

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.58  E-value=1.9e-14  Score=142.01  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH-HH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~-~l  308 (426)
                      ..+|+|+|+||+|+.......   +.+.                         ..+.+..+|++||+.+.|+..|.+ .+
T Consensus       213 t~KPvI~VlNK~Dl~~~~~~~---~~l~-------------------------~~~~~~~iI~iSA~~e~~L~~L~~~~i  264 (318)
T cd01899         213 RSKPMVIAANKADIPDAENNI---SKLR-------------------------LKYPDEIVVPTSAEAELALRRAAKQGL  264 (318)
T ss_pred             cCCcEEEEEEHHHccChHHHH---HHHH-------------------------hhCCCCeEEEEeCcccccHHHHHHhhH
Confidence            457999999999986554321   1111                         112356799999999999999998 69


Q ss_pred             HHHHHHHHhh
Q 014354          309 EESAQEFMET  318 (426)
Q Consensus       309 ~~~~~~~~~~  318 (426)
                      .+++|+.+++
T Consensus       265 ~~~lPe~~~f  274 (318)
T cd01899         265 IKYDPGDSDF  274 (318)
T ss_pred             HHhCCCCCCc
Confidence            9999987655

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04121 Rab40 Rab40 subfamily

Probab=99.57  E-value=3.4e-14  Score=130.45  Aligned_cols=162  Identities=17%  Similarity=0.150  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+++|..|||||||+.++....+....              +.+..++....                .+...   
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~--------------~~t~~~~~~~~----------------~i~~~---   51 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPY--------------GYNMGIDYKTT----------------TILLD---   51 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCcceeEEEEE----------------EEEEC---
Confidence            4578999999999999999999976543211              00100000000                00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .....+.||||||+.++.       .+...+ ...+|++|+|+|.+...+-..   . ..++..+
T Consensus        52 ---------------~~~~~l~iwDt~G~~~~~-------~l~~~~-~~~ad~illVfD~t~~~Sf~~---~-~~w~~~i  104 (189)
T cd04121          52 ---------------GRRVKLQLWDTSGQGRFC-------TIFRSY-SRGAQGIILVYDITNRWSFDG---I-DRWIKEI  104 (189)
T ss_pred             ---------------CEEEEEEEEeCCCcHHHH-------HHHHHH-hcCCCEEEEEEECcCHHHHHH---H-HHHHHHH
Confidence                           123678999999997752       222222 135799999999875433211   1 1111222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .  ..+.|+|||.||+|+.....+.  ..+.+.+.                      .. ...+++.+||++|.||.++|
T Consensus       105 ~~~~~~~piilVGNK~DL~~~~~v~--~~~~~~~a----------------------~~-~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121         105 DEHAPGVPKILVGNRLHLAFKRQVA--TEQAQAYA----------------------ER-NGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             HHhCCCCCEEEEEECccchhccCCC--HHHHHHHH----------------------HH-cCCEEEEecCCCCCCHHHHH
Confidence            2  2478999999999996532210  11111111                      11 13579999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      .+|.+.+..
T Consensus       160 ~~l~~~i~~  168 (189)
T cd04121         160 TELARIVLM  168 (189)
T ss_pred             HHHHHHHHH
Confidence            999886654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.57  E-value=2.1e-14  Score=153.00  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.||||||+.++.      ..+...+  ..+|.+|+|||+..+...+++.     .+..+...++|.|+|+||+|+.
T Consensus        73 ~~~lnLiDTPGh~dF~------~~v~~sl--~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~  139 (600)
T PRK05433         73 TYILNLIDTPGHVDFS------YEVSRSL--AACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP  139 (600)
T ss_pred             cEEEEEEECCCcHHHH------HHHHHHH--HHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence            4688999999998862      1222233  2469999999999887765532     2223445689999999999986


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .... ......+....                 +      .....++++||++|.|+.+|+++|...+|.
T Consensus       140 ~a~~-~~v~~ei~~~l-----------------g------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        140 AADP-ERVKQEIEDVI-----------------G------IDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             cccH-HHHHHHHHHHh-----------------C------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            5321 11222221100                 0      112358999999999999999999988765

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.57  E-value=3.1e-14  Score=145.22  Aligned_cols=105  Identities=16%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD  242 (426)
                      ++.++.||||||+.++.      ..+..  ....+|++++|||+..+...+++     ..+..+...++|.+ +|+||+|
T Consensus        73 ~~~~~~liDtpGh~~f~------~~~~~--~~~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~D  139 (394)
T TIGR00485        73 ENRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCD  139 (394)
T ss_pred             CCEEEEEEECCchHHHH------HHHHH--HHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEecc
Confidence            34679999999997642      11211  12457999999999988776653     34444566788876 5899999


Q ss_pred             CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      +.......+ +...++.+...              .+.    ...+.+++++||++|.
T Consensus       140 l~~~~~~~~~~~~~i~~~l~~--------------~~~----~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       140 MVDDEELLELVEMEVRELLSE--------------YDF----PGDDTPIIRGSALKAL  179 (394)
T ss_pred             cCCHHHHHHHHHHHHHHHHHh--------------cCC----CccCccEEECcccccc
Confidence            987543222 22233322211              000    0123789999999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.57  E-value=3.4e-14  Score=145.40  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhccC-CeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiD  242 (426)
                      ..+.||||||+.++.         ..++.. ..+|++++|+|+..+. ..++..     .+..+...+. |.|+|+||+|
T Consensus        85 ~~i~liDtPG~~~f~---------~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~D  150 (411)
T PRK04000         85 RRVSFVDAPGHETLM---------ATMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKID  150 (411)
T ss_pred             cEEEEEECCCHHHHH---------HHHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeec
Confidence            578999999986541         122222 3479999999999875 444321     2223344454 6899999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +.+..........+..+...                    .+....+++++||++|.|+..|+++|...++
T Consensus       151 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        151 LVSKERALENYEQIKEFVKG--------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             cccchhHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            98754332222222211110                    0123468999999999999999999987654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.56  E-value=1.5e-14  Score=123.98  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ..++.+|||||+.......        ......++++++|+|+.......................+.|+++|+||+|+.
T Consensus        44 ~~~~~l~D~~g~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~  115 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLR--------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP  115 (157)
T ss_pred             EEEEEEEecCChHHHHhHH--------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence            4688999999987642111        11224579999999998654332221110112233456789999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ......... ....+                       ......+++++|+..|.|+.+++++|.
T Consensus       116 ~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         116 EERVVSEEE-LAEQL-----------------------AKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cccchHHHH-HHHHH-----------------------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            765332211 00000                       113457899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PLN03108 Rab family protein; Provisional

Probab=99.56  E-value=7.3e-14  Score=130.25  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=94.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|++|||||||+++|++..+.....       |.+.. .+..                       +.+..   
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~-------~ti~~-~~~~-----------------------~~i~~---   50 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGV-EFGA-----------------------RMITI---   50 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------CCccc-eEEE-----------------------EEEEE---
Confidence            34789999999999999999999876432110       10000 0000                       00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.+|||||+..+.       .+...+ ...+|++|+|+|+....+... ....+......
T Consensus        51 --------------~~~~i~l~l~Dt~G~~~~~-------~~~~~~-~~~ad~~vlv~D~~~~~s~~~-l~~~~~~~~~~  107 (210)
T PLN03108         51 --------------DNKPIKLQIWDTAGQESFR-------SITRSY-YRGAAGALLVYDITRRETFNH-LASWLEDARQH  107 (210)
T ss_pred             --------------CCEEEEEEEEeCCCcHHHH-------HHHHHH-hccCCEEEEEEECCcHHHHHH-HHHHHHHHHHh
Confidence                          0122467899999986641       111111 124789999999965332111 10111111111


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ....+|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.++|.+
T Consensus       108 ~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108        108 ANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAK---------------------E--HGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             cCCCCcEEEEEECccCccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHH
Confidence            23478999999999987542110  011111100                     1  1357999999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      +.+.+..
T Consensus       163 l~~~~~~  169 (210)
T PLN03108        163 TAAKIYK  169 (210)
T ss_pred             HHHHHHH
Confidence            8876643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.55  E-value=4.6e-14  Score=150.07  Aligned_cols=122  Identities=17%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (426)
Q Consensus       163 ~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD  242 (426)
                      ++++.+.||||||+.++.      ..+...+  ..+|.+++|||+..+...++     ..++..+...++|.|+|+||+|
T Consensus        61 ~~~~kinlIDTPGh~DF~------~ev~~~l--~~aD~alLVVDa~~G~~~qT-----~~~l~~a~~~~ip~IVviNKiD  127 (594)
T TIGR01394        61 YNGTKINIVDTPGHADFG------GEVERVL--GMVDGVLLLVDASEGPMPQT-----RFVLKKALELGLKPIVVINKID  127 (594)
T ss_pred             ECCEEEEEEECCCHHHHH------HHHHHHH--HhCCEEEEEEeCCCCCcHHH-----HHHHHHHHHCCCCEEEEEECCC
Confidence            356889999999998762      1222222  34699999999998876554     3345566678899999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC----------CHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESA  312 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~----------gv~~l~~~l~~~~  312 (426)
                      +..... ..+...+..+...+              +..  .-....+++++||++|.          |+..|++.|...+
T Consensus       128 ~~~a~~-~~v~~ei~~l~~~~--------------g~~--~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       128 RPSARP-DEVVDEVFDLFAEL--------------GAD--DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             CCCcCH-HHHHHHHHHHHHhh--------------ccc--cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            865321 12222222221110              000  00013579999999996          7999999998877


Q ss_pred             HH
Q 014354          313 QE  314 (426)
Q Consensus       313 ~~  314 (426)
                      |.
T Consensus       191 P~  192 (594)
T TIGR01394       191 PA  192 (594)
T ss_pred             CC
Confidence            64

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04129 Rho2 Rho2 subfamily

Probab=99.55  E-value=2.8e-14  Score=130.37  Aligned_cols=122  Identities=19%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl  243 (426)
                      ..+.+|||||+..+.....        .....++++++|.|.....+......   .+...+.  ..++|+|||+||+|+
T Consensus        49 ~~l~i~Dt~g~~~~~~~~~--------~~~~~a~~~llv~~i~~~~s~~~~~~---~~~~~i~~~~~~~piilvgnK~Dl  117 (187)
T cd04129          49 VQLALWDTAGQEEYERLRP--------LSYSKAHVILIGFAVDTPDSLENVRT---KWIEEVRRYCPNVPVILVGLKKDL  117 (187)
T ss_pred             EEEEEEECCCChhccccch--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence            4678999999876521111        11144688888887754322111110   1122222  236999999999998


Q ss_pred             CChHhHHHHH--HHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ..........  ....                ....+..+...++..+++++||++|.|+++++.++.+.+.-
T Consensus       118 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         118 RQDAVAKEEYRTQRFV----------------PIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             hhCcccccccccCCcC----------------CHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            5421100000  0000                00000011111233579999999999999999999876543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.55  E-value=2.6e-14  Score=129.53  Aligned_cols=157  Identities=22%  Similarity=0.358  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+++|+.|||||||+++|.......              ..| |..+.+                      .+..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~--------------~~p-T~g~~~----------------------~~i~   54 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE--------------TIP-TIGFNI----------------------EEIK   54 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE--------------EEE-ESSEEE----------------------EEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc--------------cCc-cccccc----------------------ceee
Confidence            466789999999999999999998654221              011 111100                      0000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ..+..+.+||.+|...... |...       +  ..++.+|||||+....   .+.........
T Consensus        55 ----------------~~~~~~~~~d~gG~~~~~~~w~~y-------~--~~~~~iIfVvDssd~~---~l~e~~~~L~~  106 (175)
T PF00025_consen   55 ----------------YKGYSLTIWDLGGQESFRPLWKSY-------F--QNADGIIFVVDSSDPE---RLQEAKEELKE  106 (175)
T ss_dssp             ----------------ETTEEEEEEEESSSGGGGGGGGGG-------H--TTESEEEEEEETTGGG---GHHHHHHHHHH
T ss_pred             ----------------eCcEEEEEEeccccccccccceee-------c--cccceeEEEEecccce---eecccccchhh
Confidence                            2447899999999866421 2111       1  2468999999997532   22222222222


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCC
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAG  300 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~g  300 (426)
                      ++.   ..++|++|++||.|+...-...++...+.                       +...  .....++.+||.+|.|
T Consensus       107 ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~-----------------------l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen  107 LLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG-----------------------LEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             HHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT-----------------------GGGTTSSSCEEEEEEBTTTTBT
T ss_pred             hcchhhcccceEEEEeccccccCcchhhHHHhhhh-----------------------hhhcccCCceEEEeeeccCCcC
Confidence            232   34799999999999887543322322211                       0011  1235699999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          301 IEAYFKAVEES  311 (426)
Q Consensus       301 v~~l~~~l~~~  311 (426)
                      +.+.++||.+.
T Consensus       164 v~e~l~WL~~~  174 (175)
T PF00025_consen  164 VDEGLEWLIEQ  174 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK12739 elongation factor G; Reviewed

Probab=99.55  E-value=7.3e-14  Score=151.87  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+...|+|+|++|+|||||+++|+.........+.+.+         .++..|....      -...|+.......+   
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~---------~~~~~D~~~~------E~~rgiti~~~~~~---   67 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD---------GAATMDWMEQ------EQERGITITSAATT---   67 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC---------CccccCCChh------HhhcCCCccceeEE---
Confidence            35678999999999999999999875432211100100         0111110000      00111111111100   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                           +         ..++.++.||||||+.++.      ..+...+  ..+|++|+|||+..+...++     ..++..
T Consensus        68 -----~---------~~~~~~i~liDTPG~~~f~------~e~~~al--~~~D~~ilVvDa~~g~~~qt-----~~i~~~  120 (691)
T PRK12739         68 -----C---------FWKGHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVSGVEPQS-----ETVWRQ  120 (691)
T ss_pred             -----E---------EECCEEEEEEcCCCHHHHH------HHHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHH
Confidence                 0         1356899999999997642      1222222  34699999999999887665     345556


Q ss_pred             HhhccCCeEEEEecCCCCCh
Q 014354          227 LYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~  246 (426)
                      +...++|.|+++||+|+...
T Consensus       121 ~~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        121 ADKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHcCCCEEEEEECCCCCCC
Confidence            66788999999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.54  E-value=9.8e-15  Score=141.22  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+.++.||||||+.++.      ..+...+  ..+|++++|+|+..+.....     ...+..+...++|.++|+||+|+
T Consensus        62 ~~~~i~liDtPG~~~f~------~~~~~~l--~~aD~~i~Vvd~~~g~~~~~-----~~~~~~~~~~~~p~iivvNK~D~  128 (268)
T cd04170          62 KGHKINLIDTPGYADFV------GETRAAL--RAADAALVVVSAQSGVEVGT-----EKLWEFADEAGIPRIIFINKMDR  128 (268)
T ss_pred             CCEEEEEEECcCHHHHH------HHHHHHH--HHCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCcc
Confidence            45789999999997641      1222222  34799999999988765543     22334456678999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      .... .......++   ..                     +....-.+.++..+|.|+..+.+.+...
T Consensus       129 ~~~~-~~~~~~~l~---~~---------------------~~~~~~~~~ip~~~~~~~~~~vd~~~~~  171 (268)
T cd04170         129 ERAD-FDKTLAALQ---EA---------------------FGRPVVPLQLPIGEGDDFKGVVDLLTEK  171 (268)
T ss_pred             CCCC-HHHHHHHHH---HH---------------------hCCCeEEEEecccCCCceeEEEEcccCE
Confidence            8653 112222222   11                     1112223455677888887777666543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03126 Elongation factor Tu; Provisional

Probab=99.54  E-value=5.5e-14  Score=145.86  Aligned_cols=106  Identities=19%  Similarity=0.222  Sum_probs=68.4

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      ++..+.||||||+.++.      ..+...+  ..+|++++|||+..+...++     ..++..+...++| .|+++||+|
T Consensus       142 ~~~~i~liDtPGh~~f~------~~~~~g~--~~aD~ailVVda~~G~~~qt-----~e~~~~~~~~gi~~iIvvvNK~D  208 (478)
T PLN03126        142 ENRHYAHVDCPGHADYV------KNMITGA--AQMDGAILVVSGADGPMPQT-----KEHILLAKQVGVPNMVVFLNKQD  208 (478)
T ss_pred             CCcEEEEEECCCHHHHH------HHHHHHH--hhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEeccc
Confidence            45689999999997752      2222222  35799999999999887765     3344556677899 677899999


Q ss_pred             CCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCH
Q 014354          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGI  301 (426)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv  301 (426)
                      ++..+...+ +...+..++..              .     .|. ..++++++||.+|.++
T Consensus       209 l~~~~~~~~~i~~~i~~~l~~--------------~-----g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        209 QVDDEELLELVELEVRELLSS--------------Y-----EFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             ccCHHHHHHHHHHHHHHHHHh--------------c-----CCCcCcceEEEEEccccccc
Confidence            987543322 22233322211              0     011 3578999999998643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=99.54  E-value=5.3e-14  Score=140.34  Aligned_cols=174  Identities=20%  Similarity=0.159  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHH----HHHcCCCCCCCccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV----MKQFNLGPNGGILT  143 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~----~~~~~l~~ng~i~~  143 (426)
                      +.++++|.|+.|||||||||+++..  ..+.+++|+.++.+-.      +|| ...+.-...    ...+--..|||+||
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~------~ID-~~ll~~~~~~~~~~~~v~el~nGCiCC   73 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDL------GID-GEILKACGIEGCSEENIVELANGCICC   73 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccc------cch-HHHHhccccccCCcceEEEeCCCCccc
Confidence            4578999999999999999999975  3466777777665422      222 000000000    00122236899999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchh--
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMT--  215 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~--  215 (426)
                      +++  .+....+..++. ....+++++|+|+|+.++       ..+.+.+..      ...+.+|.|||+.+......  
T Consensus        74 s~~--~dl~~~l~~l~~-~~~~~d~IvIEtsG~a~P-------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~  143 (341)
T TIGR02475        74 TVA--DDFIPTMTKLLA-RRQRPDHILIETSGLALP-------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAA  143 (341)
T ss_pred             cCc--HHHHHHHHHHHh-ccCCCCEEEEeCCCCCCH-------HHHHHHhcCccccceEEeeeEEEEEECchhhhhcccc
Confidence            854  333333333332 235689999999999987       234444421      23578999999976532100  


Q ss_pred             ---h----h------hhHHHHH-HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354          216 ---F----M------SNMLYAC-SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ  260 (426)
Q Consensus       216 ---~----~------~~~l~~~-~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~  260 (426)
                         .    +      ....... -...|.....+||+||+|+++.+.+..+...++.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~  202 (341)
T TIGR02475       144 DPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAEL  202 (341)
T ss_pred             chhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHHhC
Confidence               0    0      0000001 113577889999999999999887766666665433

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.54  E-value=4.1e-14  Score=131.00  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD  242 (426)
                      ...+.||||||+.++.       .+...+ -..++++|+|+|.....+....    ..+...+.+  .++|+|||+||+|
T Consensus        43 ~~~l~iwDt~G~e~~~-------~l~~~~-~~~ad~~ilV~D~t~~~S~~~i----~~w~~~i~~~~~~~piilvgNK~D  110 (200)
T smart00176       43 PIRFNVWDTAGQEKFG-------GLRDGY-YIQGQCAIIMFDVTARVTYKNV----PNWHRDLVRVCENIPIVLCGNKVD  110 (200)
T ss_pred             EEEEEEEECCCchhhh-------hhhHHH-hcCCCEEEEEEECCChHHHHHH----HHHHHHHHHhCCCCCEEEEEECcc
Confidence            3688999999997752       222211 1346899999999765433211    111222222  4789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +.......   +... +.                       ......++++||++|.||.++|.+|...+..
T Consensus       111 l~~~~v~~---~~~~-~~-----------------------~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      111 VKDRKVKA---KSIT-FH-----------------------RKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             cccccCCH---HHHH-HH-----------------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            85422110   0000 00                       0123579999999999999999999987654

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.6e-14  Score=146.12  Aligned_cols=180  Identities=16%  Similarity=0.214  Sum_probs=116.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+...++||-+...|||||..+|+.......                        ..+.-+++|..+.+....||.....
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~------------------------~~~~q~q~LDkl~vERERGITIkaQ  113 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTID------------------------NNIGQEQVLDKLQVERERGITIKAQ  113 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCC------------------------CCCchhhhhhhhhhhhhcCcEEEee
Confidence            5677899999999999999999998763210                        0011123344444444445432100


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        ...+.+.      .++.+-+.+||||||.+|..      .+.+.+  +-|+-+|+||||..|...++.     ...-+
T Consensus       114 --tasify~------~~~~ylLNLIDTPGHvDFs~------EVsRsl--aac~G~lLvVDA~qGvqAQT~-----anf~l  172 (650)
T KOG0462|consen  114 --TASIFYK------DGQSYLLNLIDTPGHVDFSG------EVSRSL--AACDGALLVVDASQGVQAQTV-----ANFYL  172 (650)
T ss_pred             --eeEEEEE------cCCceEEEeecCCCcccccc------eehehh--hhcCceEEEEEcCcCchHHHH-----HHHHH
Confidence              0000000      02336788999999999842      222222  347999999999999998872     23334


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ..+.++.+|.|+||||+...+- .+....+..+..                       .+..+++.+||++|.|+..+++
T Consensus       173 Afe~~L~iIpVlNKIDlp~adp-e~V~~q~~~lF~-----------------------~~~~~~i~vSAK~G~~v~~lL~  228 (650)
T KOG0462|consen  173 AFEAGLAIIPVLNKIDLPSADP-ERVENQLFELFD-----------------------IPPAEVIYVSAKTGLNVEELLE  228 (650)
T ss_pred             HHHcCCeEEEeeeccCCCCCCH-HHHHHHHHHHhc-----------------------CCccceEEEEeccCccHHHHHH
Confidence            5577899999999999987531 122222221110                       1346899999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.++.|..
T Consensus       229 AII~rVPpP  237 (650)
T KOG0462|consen  229 AIIRRVPPP  237 (650)
T ss_pred             HHHhhCCCC
Confidence            999998863

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.54  E-value=2.7e-14  Score=129.80  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc----CCCCCCCccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF----NLGPNGGILTSL  145 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~----~l~~ng~i~~~~  145 (426)
                      |+++|.|++||||||||++++. ....+.+++++.++.+-.      ++|       .+.++..    .-..+||+||++
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~------~iD-------~~~l~~~~~~v~~l~~gcicc~~   66 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEV------NID-------AELLQEDGVPVVELNNGCICCTL   66 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTST------HHH-------HHHHHTTT-EEEEECTTTESS-T
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccc------ccc-------hhhhcccceEEEEecCCCccccc
Confidence            5789999999999999999998 556677787777665421      111       0111221    223479999973


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      +  ......+..+.......++++||++.|..++...    ......+. ....+.+++|||+.+...... .   .  .
T Consensus        67 ~--~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~-~---~--~  134 (178)
T PF02492_consen   67 R--DDLVEALRRLLREYEERPDRIIIETSGLADPAPL----ILQDPPLKEDFRLDSIITVVDATNFDELEN-I---P--E  134 (178)
T ss_dssp             T--S-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGH----HHHSHHHHHHESESEEEEEEEGTTHGGHTT-H---C--H
T ss_pred             H--HHHHHHHHHHHHhcCCCcCEEEECCccccccchh----hhccccccccccccceeEEecccccccccc-c---h--h
Confidence            3  2222222222221112589999999999887433    10111122 234688999999976521111 1   1  1


Q ss_pred             HHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQ  260 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~  260 (426)
                      -...+.....+||+||+|+++.+. +..+.+.++.++
T Consensus       135 ~~~~Qi~~ADvIvlnK~D~~~~~~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  135 LLREQIAFADVIVLNKIDLVSDEQKIERVREMIRELN  171 (178)
T ss_dssp             HHHHHHCT-SEEEEE-GGGHHHH--HHHHHHHHHHH-
T ss_pred             hhhhcchhcCEEEEeccccCChhhHHHHHHHHHHHHC
Confidence            124577889999999999998873 355555555444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00007 elongation factor G; Reviewed

Probab=99.53  E-value=9.6e-14  Score=150.92  Aligned_cols=71  Identities=17%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ++.++.|+||||+.++.      ..+...+  ..+|++|+|||+..+...++     ..++..+...++|.|+++||+|+
T Consensus        73 ~~~~~~liDTPG~~~f~------~ev~~al--~~~D~~vlVvda~~g~~~qt-----~~~~~~~~~~~~p~iv~vNK~D~  139 (693)
T PRK00007         73 KDHRINIIDTPGHVDFT------IEVERSL--RVLDGAVAVFDAVGGVEPQS-----ETVWRQADKYKVPRIAFVNKMDR  139 (693)
T ss_pred             CCeEEEEEeCCCcHHHH------HHHHHHH--HHcCEEEEEEECCCCcchhh-----HHHHHHHHHcCCCEEEEEECCCC
Confidence            46899999999997642      1122222  34699999999999987766     34556677889999999999999


Q ss_pred             CChH
Q 014354          244 AQHE  247 (426)
Q Consensus       244 ~~~~  247 (426)
                      ....
T Consensus       140 ~~~~  143 (693)
T PRK00007        140 TGAD  143 (693)
T ss_pred             CCCC
Confidence            8643

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.53  E-value=1e-13  Score=150.74  Aligned_cols=136  Identities=20%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.+.|+|+|++|+|||||+|+|+...........+.         ++++..|....      -..      .|+.....
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~---------~g~~~~D~~~~------e~~------rgiti~~~   66 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVH---------DGAATMDWMEQ------EKE------RGITITSA   66 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCcccccccc---------CCccccCCCHH------HHh------cCCCEecc
Confidence            3567899999999999999999987543321111110         11111110000      001      12211100


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        ...+         ..++.++.||||||+.++.      ..+...+  ..+|++|+|||+..+...++     ..++..
T Consensus        67 --~~~~---------~~~~~~i~liDTPG~~~~~------~~~~~~l--~~~D~~ilVvda~~g~~~~~-----~~~~~~  122 (689)
T TIGR00484        67 --ATTV---------FWKGHRINIIDTPGHVDFT------VEVERSL--RVLDGAVAVLDAVGGVQPQS-----ETVWRQ  122 (689)
T ss_pred             --eEEE---------EECCeEEEEEECCCCcchh------HHHHHHH--HHhCEEEEEEeCCCCCChhH-----HHHHHH
Confidence              0011         1356899999999998752      1122222  34699999999998876654     234455


Q ss_pred             HhhccCCeEEEEecCCCCChH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~  247 (426)
                      +...++|.++|+||+|+....
T Consensus       123 ~~~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484       123 ANRYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             HHHcCCCEEEEEECCCCCCCC
Confidence            667789999999999998643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.52  E-value=2.8e-14  Score=120.07  Aligned_cols=115  Identities=23%  Similarity=0.395  Sum_probs=69.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|.+|||||||+|+|++.....            ++..+++|    +...              .+.+.       
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------~~~~~~~T----~~~~--------------~~~~~-------   43 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAK------------VSNIPGTT----RDPV--------------YGQFE-------   43 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSE------------ESSSTTSS----SSEE--------------EEEEE-------
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccc------------ccccccce----eeee--------------eeeee-------
Confidence            48999999999999999999864321            44444444    1100              00000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ..+..+.|+||||+.+..........+...+.. ..+|+++||+|+......     ....+++.+. 
T Consensus        44 ------------~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~-----~~~~~~~~l~-  105 (116)
T PF01926_consen   44 ------------YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITE-----DDKNILRELK-  105 (116)
T ss_dssp             ------------ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHH-----HHHHHHHHHH-
T ss_pred             ------------eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCH-----HHHHHHHHHh-
Confidence                        133577899999997753222211222222222 557999999997662221     1123334444 


Q ss_pred             ccCCeEEEEec
Q 014354          230 TRLPLVLAFNK  240 (426)
Q Consensus       230 ~~~P~IlVlNK  240 (426)
                      .+.|.++|+||
T Consensus       106 ~~~~~i~v~NK  116 (116)
T PF01926_consen  106 NKKPIILVLNK  116 (116)
T ss_dssp             TTSEEEEEEES
T ss_pred             cCCCEEEEEcC
Confidence            78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.52  E-value=9.6e-14  Score=123.65  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-hccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-~~~~P~IlVlNKiDl~  244 (426)
                      ..+.||||+|+...        .   .+  ..+|++++|.|.+..-+-.... ..+..+.... ..++|++||.||+|+.
T Consensus        47 ~~l~i~D~~g~~~~--------~---~~--~~~~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~  112 (158)
T cd04103          47 HLLLIRDEGGAPDA--------Q---FA--SWVDAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAIS  112 (158)
T ss_pred             EEEEEEECCCCCch--------h---HH--hcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence            56889999999542        1   11  3468999999987543322211 1111111111 1468999999999974


Q ss_pred             C--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          245 Q--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       245 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      .  .+.+.  ......+                  +    ......+++++||++|.||+++|..+.+.
T Consensus       113 ~~~~~~v~--~~~~~~~------------------~----~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         113 ESNPRVID--DARARQL------------------C----ADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             hcCCcccC--HHHHHHH------------------H----HHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            3  11110  0011111                  1    11223579999999999999999988753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.51  E-value=1e-13  Score=143.10  Aligned_cols=108  Identities=13%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHhhccCCe-E
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLPL-V  235 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~~~~~P~-I  235 (426)
                      ++..+.||||||+.++.      ..+...  ...+|++++|||+..+..       .++     ...+.++...++|. |
T Consensus        83 ~~~~i~lIDtPGh~~f~------~~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT-----~eh~~~~~~~gi~~ii  149 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFI------KNMITG--TSQADVAILVVASTAGEFEAGISKDGQT-----REHALLAFTLGVKQMI  149 (446)
T ss_pred             CCeEEEEEECCChHHHH------HHHHHh--hhhcCEEEEEEEcCCCceecccCCCccH-----HHHHHHHHHcCCCeEE
Confidence            45789999999987651      122211  245899999999998762       333     34455567778885 6


Q ss_pred             EEEecCCCCC----hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHH
Q 014354          236 LAFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       236 lVlNKiDl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~  303 (426)
                      +++||+|...    .....++...+..+...              +     .+. ...++||+||++|.|+.+
T Consensus       150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~--------------~-----g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKK--------------V-----GYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEEccccccchhhHHHHHHHHHHHHHHHHh--------------c-----CCCcccceEEEeecccCCCccc
Confidence            8999999543    23233333333322221              0     111 247899999999999864

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.51  E-value=1.1e-13  Score=129.28  Aligned_cols=118  Identities=17%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKi  241 (426)
                      +...+.+|||||+..+.       .+...+ ...++++++|+|.....+....    ..+...+.  ..++|+++|+||+
T Consensus        56 ~~i~i~~~Dt~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~~i~lv~nK~  123 (215)
T PTZ00132         56 GPICFNVWDTAGQEKFG-------GLRDGY-YIKGQCAIIMFDVTSRITYKNV----PNWHRDIVRVCENIPIVLVGNKV  123 (215)
T ss_pred             eEEEEEEEECCCchhhh-------hhhHHH-hccCCEEEEEEECcCHHHHHHH----HHHHHHHHHhCCCCCEEEEEECc
Confidence            34678899999986641       111111 1246889999998754432111    11111111  2468999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK  320 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~  320 (426)
                      |+.......+...    +.                      . .....++++||++|.|+.+.+.+|.+.+...+..+.
T Consensus       124 Dl~~~~~~~~~~~----~~----------------------~-~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~  175 (215)
T PTZ00132        124 DVKDRQVKARQIT----FH----------------------R-KKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVF  175 (215)
T ss_pred             cCccccCCHHHHH----HH----------------------H-HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhccccee
Confidence            9865321111110    10                      0 123568999999999999999999988877666543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.51  E-value=2.6e-13  Score=139.85  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC---CCchhhhhhHHHHHHHHhhcc-CCeEEEEe
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS---ANPMTFMSNMLYACSILYKTR-LPLVLAFN  239 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~---~~~~~~~~~~l~~~~~l~~~~-~P~IlVlN  239 (426)
                      .+..+.||||||+.++.      ..+...  ...+|++++|+|+..+   ...+...     .+.++...+ .|+|+|+|
T Consensus        83 ~~~~i~iiDtpGh~~f~------~~~~~~--~~~aD~~ilVvDa~~~~~~~~~~t~~-----~~~~~~~~~~~~iIVviN  149 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFI------KNMITG--ASQADAAVLVVAVGDGEFEVQPQTRE-----HAFLARTLGINQLIVAIN  149 (426)
T ss_pred             CCeEEEEEECCCHHHHH------HHHHhh--hhhCCEEEEEEECCCCCcccCCchHH-----HHHHHHHcCCCeEEEEEE
Confidence            45789999999986541      111111  2457999999999887   3333211     112223334 46888999


Q ss_pred             cCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          240 KTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       240 KiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      |+|+...  .........+..+...              .+.    .....+++++||++|.|+.++..
T Consensus       150 K~Dl~~~~~~~~~~~~~ei~~~~~~--------------~g~----~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       150 KMDSVNYDEEEFEAIKKEVSNLIKK--------------VGY----NPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             ChhccCccHHHHHHHHHHHHHHHHH--------------cCC----CcccceEEEeecccccccccccc
Confidence            9999752  2222233333322211              000    01236899999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.51  E-value=2.3e-13  Score=142.90  Aligned_cols=139  Identities=21%  Similarity=0.241  Sum_probs=81.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +...|+|+|++|||||||+++|+.........+.+-+....    ..+ ..|.   .   +.-+..|+.-...++.    
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~----~~~-~~D~---~---~~E~~rgiSi~~~~~~----   73 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSG----RHA-TSDW---M---EMEKQRGISVTSSVMQ----   73 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccC----ccc-cCCC---c---HHHHhhCCceeeeeEE----
Confidence            45689999999999999999998654333322222110000    000 0000   0   0011122111111111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                          +         ..+++.+.||||||+.++.      ......+  ..+|++|+|||+..+...+.     ..++..+
T Consensus        74 ----~---------~~~~~~inliDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~  127 (526)
T PRK00741         74 ----F---------PYRDCLINLLDTPGHEDFS------EDTYRTL--TAVDSALMVIDAAKGVEPQT-----RKLMEVC  127 (526)
T ss_pred             ----E---------EECCEEEEEEECCCchhhH------HHHHHHH--HHCCEEEEEEecCCCCCHHH-----HHHHHHH
Confidence                0         0356789999999997752      1222233  34699999999998876543     2344555


Q ss_pred             hhccCCeEEEEecCCCCChH
Q 014354          228 YKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~  247 (426)
                      ...++|+++++||+|+....
T Consensus       128 ~~~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741        128 RLRDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             HhcCCCEEEEEECCcccccC
Confidence            67799999999999987643

>PRK10218 GTP-binding protein; Provisional

Probab=99.51  E-value=1.8e-13  Score=145.43  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=78.4

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      +++.+.||||||+.++.      ..+...+  ..+|++|+|+|+..+...++     ..++..+...++|.|+|+||+|+
T Consensus        66 ~~~~inliDTPG~~df~------~~v~~~l--~~aDg~ILVVDa~~G~~~qt-----~~~l~~a~~~gip~IVviNKiD~  132 (607)
T PRK10218         66 NDYRINIVDTPGHADFG------GEVERVM--SMVDSVLLVVDAFDGPMPQT-----RFVTKKAFAYGLKPIVVINKVDR  132 (607)
T ss_pred             CCEEEEEEECCCcchhH------HHHHHHH--HhCCEEEEEEecccCccHHH-----HHHHHHHHHcCCCEEEEEECcCC
Confidence            56789999999998862      1222222  34799999999998866544     33445566778999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC----------CHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESAQ  313 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~----------gv~~l~~~l~~~~~  313 (426)
                      ..... ......+..+...+              .. . .....+|++++||++|.          |+..|++.|...+|
T Consensus       133 ~~a~~-~~vl~ei~~l~~~l--------------~~-~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        133 PGARP-DWVVDQVFDLFVNL--------------DA-T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCCch-hHHHHHHHHHHhcc--------------Cc-c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            75321 11222222221110              00 0 01123679999999998          58888888887776


Q ss_pred             H
Q 014354          314 E  314 (426)
Q Consensus       314 ~  314 (426)
                      .
T Consensus       196 ~  196 (607)
T PRK10218        196 A  196 (607)
T ss_pred             C
Confidence            4

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=1.1e-13  Score=123.99  Aligned_cols=166  Identities=18%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+|+|..|+|||.|+.++....+..... +.++.|-..           |...                 .    
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~-sTIGVDf~~-----------rt~e-----------------~----   53 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYI-STIGVDFKI-----------RTVE-----------------L----   53 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhc-ceeeeEEEE-----------EEee-----------------e----
Confidence            456899999999999999999999987664332 111211111           1000                 0    


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~  224 (426)
                                     .++...++||||+|+.++.      .+...++++  ++.||+|.|.+.  +++....|   +.-+
T Consensus        54 ---------------~gk~iKlQIWDTAGQERFr------tit~syYR~--ahGii~vyDiT~~~SF~~v~~W---i~Ei  107 (205)
T KOG0084|consen   54 ---------------DGKTIKLQIWDTAGQERFR------TITSSYYRG--AHGIIFVYDITKQESFNNVKRW---IQEI  107 (205)
T ss_pred             ---------------cceEEEEEeeeccccHHHh------hhhHhhccC--CCeEEEEEEcccHHHhhhHHHH---HHHh
Confidence                           1345789999999998863      333444444  467777777764  33333322   2223


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCc-eEEeecccCCCHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-vv~vSA~~g~gv~~  303 (426)
                      +.....++|.+||.||+|+........  +..+.|..                      -+ ..+ ++++||+.+.+|++
T Consensus       108 ~~~~~~~v~~lLVGNK~Dl~~~~~v~~--~~a~~fa~----------------------~~-~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen  108 DRYASENVPKLLVGNKCDLTEKRVVST--EEAQEFAD----------------------EL-GIPIFLETSAKDSTNVED  162 (205)
T ss_pred             hhhccCCCCeEEEeeccccHhheecCH--HHHHHHHH----------------------hc-CCcceeecccCCccCHHH
Confidence            334456789999999999987653211  11111111                      12 234 89999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEFM  316 (426)
Q Consensus       304 l~~~l~~~~~~~~  316 (426)
                      .|..|...+....
T Consensus       163 ~F~~la~~lk~~~  175 (205)
T KOG0084|consen  163 AFLTLAKELKQRK  175 (205)
T ss_pred             HHHHHHHHHHHhc
Confidence            9998887776643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.51  E-value=2e-13  Score=128.30  Aligned_cols=67  Identities=25%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.||||||+.++.      ......+  ..+|++++|+|+..+...++     ...+..+...++|.|+|+||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~------~~~~~~l--~~aD~~ilVvD~~~g~~~~t-----~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFS------SEVTAAL--RLCDGALVVVDAVEGVCVQT-----ETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccH------HHHHHHH--HhcCeeEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCCcc
Confidence            5788999999998862      2222222  34799999999998876654     233444555678999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.51  E-value=1.3e-13  Score=127.11  Aligned_cols=182  Identities=14%  Similarity=0.118  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||+|.|++.......          ....+.|.                      .+.....     
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~----------~~~~~~T~----------------------~~~~~~~-----   44 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESK----------LSASSVTK----------------------TCQKESA-----   44 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccc----------cCCCCccc----------------------ccceeeE-----
Confidence            6899999999999999999998643210          00001111                      0000000     


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                 ...+.++.||||||+.+... .......+...+..  ..++++|||+++.+ +...+     ..++..+
T Consensus        45 -----------~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-----~~~l~~l  107 (196)
T cd01852          45 -----------VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-----EQAVETL  107 (196)
T ss_pred             -----------EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-----HHHHHHH
Confidence                       02446899999999987531 11122333333332  34799999999977 54432     1222223


Q ss_pred             hh-----ccCCeEEEEecCCCCChHhHHHHHHHH-HHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          228 YK-----TRLPLVLAFNKTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       228 ~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      .+     .-.++|+|+|++|......+.+++... ..|+..+           +..+.   .++.+....+ |+..+.++
T Consensus       108 ~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~-----------~~c~~---r~~~f~~~~~-~~~~~~q~  172 (196)
T cd01852         108 QELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL-----------EKCGG---RYVAFNNKAK-GEEQEQQV  172 (196)
T ss_pred             HHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH-----------HHhCC---eEEEEeCCCC-cchhHHHH
Confidence            22     235889999999988765444333222 1111111           00000   0111122333 56778999


Q ss_pred             HHHHHHHHHHHHH-HHhhhhh
Q 014354          302 EAYFKAVEESAQE-FMETYKA  321 (426)
Q Consensus       302 ~~l~~~l~~~~~~-~~~~~~~  321 (426)
                      .+|++.|.+.+++ ..|+|..
T Consensus       173 ~~Ll~~i~~~~~~~~~~~~~~  193 (196)
T cd01852         173 KELLAKVESMVKENGGKPYTN  193 (196)
T ss_pred             HHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999998 5666654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.1e-13  Score=123.48  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+++++|..++|||||+++++...+...+.+.| +.|-                                        
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI-GiDF----------------------------------------   59 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI-GIDF----------------------------------------   59 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhccccccee-eeEE----------------------------------------
Confidence            34789999999999999999999998765443322 1110                                        


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~~  225 (426)
                      ++..+.-       ....+.+++|||+|++++.      +.+-.+++.  +.++|+|.|.+  ..+.....|.+     +
T Consensus        60 lskt~~l-------~d~~vrLQlWDTAGQERFr------slipsY~Rd--s~vaviVyDit~~~Sfe~t~kWi~-----d  119 (221)
T KOG0094|consen   60 LSKTMYL-------EDRTVRLQLWDTAGQERFR------SLIPSYIRD--SSVAVIVYDITDRNSFENTSKWIE-----D  119 (221)
T ss_pred             EEEEEEE-------cCcEEEEEEEecccHHHHh------hhhhhhccC--CeEEEEEEeccccchHHHHHHHHH-----H
Confidence            0110000       0233789999999999872      223333333  35555555654  34444444422     2


Q ss_pred             HHhhc---cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILYKT---RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~~~---~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .....   ..-++||.||.||.+++..........                    ++   +  -++.++.+||+.|.||.
T Consensus       120 v~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k--------------------Ak---e--l~a~f~etsak~g~NVk  174 (221)
T KOG0094|consen  120 VRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK--------------------AK---E--LNAEFIETSAKAGENVK  174 (221)
T ss_pred             HHhccCCCceEEEEEcccccccchhhhhHHHHHHH--------------------HH---H--hCcEEEEecccCCCCHH
Confidence            22222   244567999999999864321111100                    11   1  13468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      .||..|...++..
T Consensus       175 ~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  175 QLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHhccCc
Confidence            9999988888764

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.6e-14  Score=124.88  Aligned_cols=165  Identities=17%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+++|+|..|+|||||+-++....+.......|                                    |+-+.+...
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI------------------------------------GaaF~tktv   47 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI------------------------------------GAAFLTKTV   47 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCcccccccccc------------------------------------ccEEEEEEE
Confidence            45789999999999999999999988765321111                                    110000000


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      -.            ......+.||||+|++++.....+-.        ..+.++|+|-|.++.-+   |... ..+...+
T Consensus        48 ~~------------~~~~ikfeIWDTAGQERy~slapMYy--------RgA~AAivvYDit~~~S---F~~a-K~WvkeL  103 (200)
T KOG0092|consen   48 TV------------DDNTIKFEIWDTAGQERYHSLAPMYY--------RGANAAIVVYDITDEES---FEKA-KNWVKEL  103 (200)
T ss_pred             Ee------------CCcEEEEEEEEcCCccccccccccee--------cCCcEEEEEEecccHHH---HHHH-HHHHHHH
Confidence            00            01236889999999998732222211        23567777777764332   2211 1122222


Q ss_pred             h-hcc--CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y-KTR--LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~-~~~--~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      . +..  +-+.||.||+|+.....+. + ++.+.+              +.+         ....++.+||++|.||.++
T Consensus       104 ~~~~~~~~vialvGNK~DL~~~R~V~-~-~ea~~y--------------Ae~---------~gll~~ETSAKTg~Nv~~i  158 (200)
T KOG0092|consen  104 QRQASPNIVIALVGNKADLLERREVE-F-EEAQAY--------------AES---------QGLLFFETSAKTGENVNEI  158 (200)
T ss_pred             HhhCCCCeEEEEecchhhhhhccccc-H-HHHHHH--------------HHh---------cCCEEEEEecccccCHHHH
Confidence            2 333  2233589999999854321 1 111111              111         3467999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 014354          305 FKAVEESAQEFME  317 (426)
Q Consensus       305 ~~~l~~~~~~~~~  317 (426)
                      |..|.+.+|....
T Consensus       159 f~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  159 FQAIAEKLPCSDP  171 (200)
T ss_pred             HHHHHHhccCccc
Confidence            9999999887543

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=99.50  E-value=6.1e-14  Score=138.51  Aligned_cols=165  Identities=18%  Similarity=0.229  Sum_probs=101.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++++|.|+.|||||||||+|+..  ..+.+++|+.++.+-.      ++| ...+.  ..-..+-...|||+||++. 
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v------~iD-~~ll~--~~~~~v~eL~~GCiCCs~~-   70 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEV------SVD-DQLIG--DRATQIKTLTNGCICCSRS-   70 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCc------ccc-HHHHh--CcCceEEEECCCEEEEccC-
Confidence            5679999999999999999999975  3466777776665422      222 00110  0001122345899999854 


Q ss_pred             ccccHHHHHHHHHHHh---cCCCEEEEcCCCcccccchhchHHHHHHHH------Hh-cCCcEEEEEEeCCCCCCchhhh
Q 014354          148 FTTKFDEVISLIERRA---DHLDYVLVDTPGQIEIFTWSASGAIITEAF------AS-TFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~---~~~~~~liDTPGi~e~~~~~~~~~~l~~~~------~~-~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                       .+....+..+.....   ..++++||+|.|+.++.       .+.+.+      .. ...+.+++|||+.+....... 
T Consensus        71 -~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~-------~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-  141 (318)
T PRK11537         71 -NELEDALLDLLDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-  141 (318)
T ss_pred             -chHHHHHHHHHHHHhccCCCCCEEEEECCCccCHH-------HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-
Confidence             444444444443222   25899999999998872       233332      11 124789999999875433211 


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHH
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ  260 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~  260 (426)
                         ..  ....|.....+||+||+|+++..  ..+...++.++
T Consensus       142 ---~~--~~~~Qi~~AD~IvlnK~Dl~~~~--~~~~~~l~~ln  177 (318)
T PRK11537        142 ---FT--IAQSQVGYADRILLTKTDVAGEA--EKLRERLARIN  177 (318)
T ss_pred             ---cH--HHHHHHHhCCEEEEeccccCCHH--HHHHHHHHHhC
Confidence               11  12357788999999999999854  23444444443

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.47  E-value=6.3e-13  Score=123.38  Aligned_cols=139  Identities=19%  Similarity=0.298  Sum_probs=71.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHH--HhhccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI--LYKTRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~--l~~~~~P~IlVlNKi  241 (426)
                      +..+.||||||+.++.      ..+...+... .+++|||+|+.............++ ++..  ....++|++||+||+
T Consensus        47 ~~~~~l~D~pG~~~~~------~~~~~~~~~~-~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~  119 (203)
T cd04105          47 GKKFRLVDVPGHPKLR------DKLLETLKNS-AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ  119 (203)
T ss_pred             CceEEEEECCCCHHHH------HHHHHHHhcc-CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence            4679999999997641      2222333222 4899999999875322111111111 1111  123589999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccch------hhhHHH-Hh-h-----hhHhhhhcCCceEEeecccCC-CHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSY------TSTLTN-SL-S-----LALDEFYKNLKSVGVSSVSGA-GIEAYFKA  307 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~-~~-~-----~~l~~~~~~~~vv~vSA~~g~-gv~~l~~~  307 (426)
                      |+........+.+.++.-...++..+..      ...-.. .+ +     .........+.++..|++.+. |++.+.+|
T Consensus       120 Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w  199 (203)
T cd04105         120 DLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEW  199 (203)
T ss_pred             hhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHH
Confidence            9876543333333333222211111000      000000 00 0     000011134688999998876 69999888


Q ss_pred             HHH
Q 014354          308 VEE  310 (426)
Q Consensus       308 l~~  310 (426)
                      |.+
T Consensus       200 ~~~  202 (203)
T cd04105         200 IDE  202 (203)
T ss_pred             Hhh
Confidence            864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00503 prfC peptide chain release factor 3

Probab=99.47  E-value=7.6e-13  Score=139.05  Aligned_cols=137  Identities=19%  Similarity=0.190  Sum_probs=78.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +...|+|+|++|+|||||+++|+.........+.+-+..    ....+ ..|   ..   +..+..|+.-...++.    
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g----~~~~t-~~D---~~---~~E~~rgisi~~~~~~----   74 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRG----SQRHA-KSD---WM---EMEKQRGISITTSVMQ----   74 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceecccc----ccccc-cCC---CC---HHHHhcCCcEEEEEEE----
Confidence            567899999999999999999976543332222221100    00000 001   00   0001112111111111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                          +.         .+++++.||||||+.++.      ......+  ..+|++|+|||+..+.....     ..++..+
T Consensus        75 ----~~---------~~~~~inliDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~  128 (527)
T TIGR00503        75 ----FP---------YRDCLVNLLDTPGHEDFS------EDTYRTL--TAVDNCLMVIDAAKGVETRT-----RKLMEVT  128 (527)
T ss_pred             ----Ee---------eCCeEEEEEECCChhhHH------HHHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHH
Confidence                11         356899999999996642      1122222  34799999999998766543     2233445


Q ss_pred             hhccCCeEEEEecCCCCC
Q 014354          228 YKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~  245 (426)
                      ...++|.|+++||+|+..
T Consensus       129 ~~~~~PiivviNKiD~~~  146 (527)
T TIGR00503       129 RLRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             HhcCCCEEEEEECccccC
Confidence            567899999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.47  E-value=6.1e-13  Score=144.86  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+..+.||||||+.++.      ..+...+  ..+|++++|+|+..+.....     ...+..+...++|.++|+||+|+
T Consensus        71 ~~~~i~liDtPG~~df~------~~~~~~l--~~aD~~ilVvd~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~  137 (687)
T PRK13351         71 DNHRINLIDTPGHIDFT------GEVERSL--RVLDGAVVVFDAVTGVQPQT-----ETVWRQADRYGIPRLIFINKMDR  137 (687)
T ss_pred             CCEEEEEEECCCcHHHH------HHHHHHH--HhCCEEEEEEeCCCCCCHHH-----HHHHHHHHhcCCCEEEEEECCCC
Confidence            45789999999997752      1122222  34699999999988776543     23344566678999999999999


Q ss_pred             CCh
Q 014354          244 AQH  246 (426)
Q Consensus       244 ~~~  246 (426)
                      ...
T Consensus       138 ~~~  140 (687)
T PRK13351        138 VGA  140 (687)
T ss_pred             CCC
Confidence            865

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.9e-13  Score=119.95  Aligned_cols=165  Identities=14%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++++++|..|+|||.||.+++...+..... ..++.+-+                               .-..+.+ 
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg-------------------------------~r~~~id-   51 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFG-------------------------------ARMVTID-   51 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeec-------------------------------eeEEEEc-
Confidence            45789999999999999999999988654221 11111111                               1011111 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .++..++||||+|+..+.      .....+++.+...++||-|+....+...+.|   +.-++..
T Consensus        52 ---------------~k~IKlqiwDtaGqe~fr------sv~~syYr~a~GalLVydit~r~sF~hL~~w---L~D~rq~  107 (216)
T KOG0098|consen   52 ---------------GKQIKLQIWDTAGQESFR------SVTRSYYRGAAGALLVYDITRRESFNHLTSW---LEDARQH  107 (216)
T ss_pred             ---------------CceEEEEEEecCCcHHHH------HHHHHHhccCcceEEEEEccchhhHHHHHHH---HHHHHHh
Confidence                           356789999999998862      2333445545455666666666666654433   1111222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.-++|+.||+|+...+.+.+.  .              .+.++++.+         ..+..+||++++||++.|.-
T Consensus       108 ~~~NmvImLiGNKsDL~~rR~Vs~E--E--------------GeaFA~ehg---------LifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen  108 SNENMVIMLIGNKSDLEARREVSKE--E--------------GEAFAREHG---------LIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             cCCCcEEEEEcchhhhhccccccHH--H--------------HHHHHHHcC---------ceeehhhhhhhhhHHHHHHH
Confidence            2456778899999999987643211  1              122333333         33668999999999999876


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      ....+..
T Consensus       163 ta~~Iy~  169 (216)
T KOG0098|consen  163 TAKEIYR  169 (216)
T ss_pred             HHHHHHH
Confidence            6655444

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.47  E-value=4.6e-13  Score=123.50  Aligned_cols=128  Identities=16%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKi  241 (426)
                      ..+.+.||||||+.+..         . ...-..+|++|+|.|.....+-..   ....+...+.  ..+.|+|||+||+
T Consensus        64 ~~v~l~iwDTaG~~~~~---------~-~~~~~~ad~iilv~d~t~~~Sf~~---~~~~w~~~i~~~~~~~piilvgNK~  130 (195)
T cd01873          64 VSVSLRLWDTFGDHDKD---------R-RFAYGRSDVVLLCFSIASPNSLRN---VKTMWYPEIRHFCPRVPVILVGCKL  130 (195)
T ss_pred             EEEEEEEEeCCCChhhh---------h-cccCCCCCEEEEEEECCChhHHHH---HHHHHHHHHHHhCCCCCEEEEEEch
Confidence            34688999999996421         0 011235799999999865432211   1001111122  1368999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      |+...... ........+......    ...+....+..+.... ..+++.+||++|.||.++|..+.+
T Consensus       131 DL~~~~~~-~~~~~~~~~~~~~~~----~~~V~~~e~~~~a~~~-~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         131 DLRYADLD-EVNRARRPLARPIKN----ADILPPETGRAVAKEL-GIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             hccccccc-hhhhccccccccccc----CCccCHHHHHHHHHHh-CCEEEEcCCCCCCCHHHHHHHHHH
Confidence            98642100 000000000000000    0001111111111112 247999999999999999998875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.46  E-value=2.2e-13  Score=121.47  Aligned_cols=153  Identities=15%  Similarity=0.220  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++++|+|++|||||||++++++...  +.++.++..+.+-..+...       .+  ...-..+.-..+||+||+++  .
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~~~d~~-------~~--~~~~~~v~~l~~GCiCC~~~--~   67 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEVGIDNQ-------LV--VDTDEEIIEMNNGCICCTVR--G   67 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCccchhHH-------HH--hCCCceEEEeCCCEeEeeCc--h
Confidence            4689999999999999999998743  4455555444321111100       00  00000111225799999743  2


Q ss_pred             ccHHHHHHHHH---HHhcCCCEEEEcCCCcccccchhchHHHHHH-HHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          150 TKFDEVISLIE---RRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       150 ~~~~~~~~~~~---~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      .....+..++.   ....+++++||||||..++.  ......+.. .+. ....+.++++||+.+.......   .   .
T Consensus        68 ~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~--~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~---~---~  139 (158)
T cd03112          68 DLIRALLDLLERLDAGKIAFDRIVIETTGLADPG--PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ---Q---T  139 (158)
T ss_pred             hHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHH--HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc---c---H
Confidence            22222222222   22357999999999998863  111111111 111 2347899999998765432211   1   1


Q ss_pred             HHHhhccCCeEEEEecCCC
Q 014354          225 SILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl  243 (426)
                      ....|.....+||+||+|+
T Consensus       140 ~~~~Qi~~ad~ivlnk~dl  158 (158)
T cd03112         140 EAQSQIAFADRILLNKTDL  158 (158)
T ss_pred             HHHHHHHHCCEEEEecccC
Confidence            1245677888999999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.46  E-value=6.3e-13  Score=119.60  Aligned_cols=178  Identities=19%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHH-cC---CCCCCC-ccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FN---LGPNGG-ILT  143 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~-~~---l~~ng~-i~~  143 (426)
                      ...|.|.|+||||||||+.+++...... ++++|+..|-..      .    .|.-    .+.+ .+   .+-+.| .| 
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t------~----~Da~----~l~~~~g~~i~~v~TG~~C-   76 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT------K----EDAD----RLRKLPGEPIIGVETGKGC-   76 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec------h----hhHH----HHHhCCCCeeEEeccCCcc-
Confidence            3789999999999999999999988665 777777666321      0    0100    0111 11   111233 33 


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCC-cccccchhchHHHHHHHHHhcCCc-EEEEEEeCCCCCCchhhhhhHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPG-QIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG-i~e~~~~~~~~~~l~~~~~~~~~d-~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                      .  +-.....+-+..+.......+++||++.| ..-++.             -...+ +-|||||...|.......... 
T Consensus        77 H--~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s-------------p~L~d~~~v~VidvteGe~~P~K~gP~-  140 (202)
T COG0378          77 H--LDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS-------------PDLGDHLRVVVIDVTEGEDIPRKGGPG-  140 (202)
T ss_pred             C--CcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC-------------cchhhceEEEEEECCCCCCCcccCCCc-
Confidence            2  11222222222233223347999999999 333221             12234 889999999887653321110 


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                              .-...++|+||+|+++.-..  ....++.+                         ...+..++|.+|+++|+
T Consensus       141 --------i~~aDllVInK~DLa~~v~~dlevm~~da~-------------------------~~np~~~ii~~n~ktg~  187 (202)
T COG0378         141 --------IFKADLLVINKTDLAPYVGADLEVMARDAK-------------------------EVNPEAPIIFTNLKTGE  187 (202)
T ss_pred             --------eeEeeEEEEehHHhHHHhCccHHHHHHHHH-------------------------HhCCCCCEEEEeCCCCc
Confidence                    11267999999999986432  22333332                         23466899999999999


Q ss_pred             CHHHHHHHHHHH
Q 014354          300 GIEAYFKAVEES  311 (426)
Q Consensus       300 gv~~l~~~l~~~  311 (426)
                      |++++++++...
T Consensus       188 G~~~~~~~i~~~  199 (202)
T COG0378         188 GLDEWLRFIEPQ  199 (202)
T ss_pred             CHHHHHHHHHhh
Confidence            999998888654

>cd01882 BMS1 Bms1

Probab=99.46  E-value=1.6e-12  Score=122.60  Aligned_cols=145  Identities=19%  Similarity=0.292  Sum_probs=89.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+|+|+|++|+|||||+|.|++.....           .+...                          .|.++. 
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------~~~~~--------------------------~g~i~i-   77 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------NISDI--------------------------KGPITV-   77 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------ccccc--------------------------cccEEE-
Confidence            4567899999999999999999999763211           00000                          111100 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                        ..             ..+.++.++||||...         .+.+..  ..+|++++|+|+..+....+     ..++.
T Consensus        78 --~~-------------~~~~~i~~vDtPg~~~---------~~l~~a--k~aDvVllviDa~~~~~~~~-----~~i~~  126 (225)
T cd01882          78 --VT-------------GKKRRLTFIECPNDIN---------AMIDIA--KVADLVLLLIDASFGFEMET-----FEFLN  126 (225)
T ss_pred             --Ee-------------cCCceEEEEeCCchHH---------HHHHHH--HhcCEEEEEEecCcCCCHHH-----HHHHH
Confidence              00             2346899999999631         222222  34799999999988776544     23444


Q ss_pred             HHhhccCCeEE-EEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          226 ILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       226 ~l~~~~~P~Il-VlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      .+...++|.++ |+||+|+..... ...+...++.   .                 ...+++.+.+++++||++.-
T Consensus       127 ~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~---~-----------------~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         127 ILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH---R-----------------FWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH---H-----------------HHHhhCCCCcEEEEeeccCC
Confidence            45566788655 999999985432 2223222221   1                 11134567899999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=7.2e-13  Score=120.22  Aligned_cols=165  Identities=17%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .....+|+++|.+|||||.|+-++....+..... .             +-.||..-+.                    .
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~-s-------------TiGIDFk~kt--------------------i   54 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI-S-------------TIGIDFKIKT--------------------I   54 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCcc-c-------------eEEEEEEEEE--------------------E
Confidence            3467899999999999999999999887653221 1             1122211000                    0


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA  223 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~  223 (426)
                      .  ..            +....+++|||+|+.++.      .....+++.  +..+++|+|.++.-+  ....|   +..
T Consensus        55 ~--l~------------g~~i~lQiWDtaGQerf~------ti~~sYyrg--A~gi~LvyDitne~Sfeni~~W---~~~  109 (207)
T KOG0078|consen   55 E--LD------------GKKIKLQIWDTAGQERFR------TITTAYYRG--AMGILLVYDITNEKSFENIRNW---IKN  109 (207)
T ss_pred             E--eC------------CeEEEEEEEEcccchhHH------HHHHHHHhh--cCeeEEEEEccchHHHHHHHHH---HHH
Confidence            0  00            234688999999998873      344445544  467888888764322  22222   222


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+.......|.+||.||+|+...+.+..-  .                      +.-++.-| .++++++||++|.||++
T Consensus       110 I~e~a~~~v~~~LvGNK~D~~~~R~V~~e--~----------------------ge~lA~e~-G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen  110 IDEHASDDVVKILVGNKCDLEEKRQVSKE--R----------------------GEALAREY-GIKFFETSAKTNFNIEE  164 (207)
T ss_pred             HHhhCCCCCcEEEeeccccccccccccHH--H----------------------HHHHHHHh-CCeEEEccccCCCCHHH
Confidence            33334457899999999999885432111  0                      11111112 47899999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      .|-.|.+.+..
T Consensus       165 aF~~La~~i~~  175 (207)
T KOG0078|consen  165 AFLSLARDILQ  175 (207)
T ss_pred             HHHHHHHHHHh
Confidence            99888776654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.45  E-value=4.3e-13  Score=118.81  Aligned_cols=158  Identities=20%  Similarity=0.307  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|.+|||||||++++.+..+.....       |..       ..+..                    .....  . 
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~-------~t~-------~~~~~--------------------~~~~~--~-   43 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYI-------PTI-------GIDSY--------------------SKEVS--I-   43 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSE-------TTS-------SEEEE--------------------EEEEE--E-
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccc-------ccc-------ccccc--------------------ccccc--c-
Confidence            58999999999999999999876543211       111       00000                    00000  0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                 ....+.+.|||++|+..+.       .+...+ ...+|++++|.|....-   .|.. ...++..+.  
T Consensus        44 -----------~~~~~~l~i~D~~g~~~~~-------~~~~~~-~~~~~~~ii~fd~~~~~---S~~~-~~~~~~~i~~~  100 (162)
T PF00071_consen   44 -----------DGKPVNLEIWDTSGQERFD-------SLRDIF-YRNSDAIIIVFDVTDEE---SFEN-LKKWLEEIQKY  100 (162)
T ss_dssp             -----------TTEEEEEEEEEETTSGGGH-------HHHHHH-HTTESEEEEEEETTBHH---HHHT-HHHHHHHHHHH
T ss_pred             -----------ccccccccccccccccccc-------cccccc-ccccccccccccccccc---cccc-ccccccccccc
Confidence                       0233678999999987652       122221 23468899999875422   1111 112222222  


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ....|++||.||.|+.....+.  .+..+.+.                      ..++ .+++.+||++|.||.++|..
T Consensus       101 ~~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~----------------------~~~~-~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen  101 KPEDIPIIVVGNKSDLSDEREVS--VEEAQEFA----------------------KELG-VPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             STTTSEEEEEEETTTGGGGSSSC--HHHHHHHH----------------------HHTT-SEEEEEBTTTTTTHHHHHHH
T ss_pred             ccccccceeeeccccccccccch--hhHHHHHH----------------------HHhC-CEEEEEECCCCCCHHHHHHH
Confidence             2358999999999988733211  01111111                      1223 78999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      +.+.+.
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887653

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.44  E-value=1.3e-12  Score=121.75  Aligned_cols=181  Identities=23%  Similarity=0.252  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||+++|.+..+...+...+.+..++....++                                   
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----------------------------------   50 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-----------------------------------   50 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-----------------------------------
Confidence            789999999999999999999999886655544443333211110                                   


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   ....++.+|||+|+.++.       .++..+- ..++.++++.|.................+.....
T Consensus        51 -------------~~~~~~~~~Dt~gq~~~~-------~~~~~y~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~  109 (219)
T COG1100          51 -------------RRNIKLQLWDTAGQEEYR-------SLRPEYY-RGANGILIVYDSTLRESSDELTEEWLEELRELAP  109 (219)
T ss_pred             -------------CCEEEEEeecCCCHHHHH-------HHHHHHh-cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC
Confidence                         012568999999998862       2222221 3367888888876533222221111212221222


Q ss_pred             ccCCeEEEEecCCCCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc--cCCCHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAYFK  306 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~--~g~gv~~l~~  306 (426)
                      ...|+|+|.||+|+......... ...+.   ..        ..+................++.+|++  .+.++.+++.
T Consensus       110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~  178 (219)
T COG1100         110 DDVPILLVGNKIDLFDEQSSSEEILNQLN---RE--------VVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK  178 (219)
T ss_pred             CCceEEEEecccccccchhHHHHHHhhhh---cC--------cchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHH
Confidence            36899999999999987532111 11100   00        00000001100010112238999999  9999999999


Q ss_pred             HHHHHHHHHHh
Q 014354          307 AVEESAQEFME  317 (426)
Q Consensus       307 ~l~~~~~~~~~  317 (426)
                      .+...+.....
T Consensus       179 ~~~~~~~~~~~  189 (219)
T COG1100         179 ELLRKLLEEIE  189 (219)
T ss_pred             HHHHHHHHhhh
Confidence            99888765443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=6e-13  Score=127.17  Aligned_cols=116  Identities=22%  Similarity=0.292  Sum_probs=85.5

Q ss_pred             CEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          167 DYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+-|+|.|||.-.         +..+++. +.-|.+++||.+...+ .+++  ...+.++.++.-  +-+|||-||+|++
T Consensus        87 ~VSfVDaPGHe~L---------MATMLsGAAlMDgAlLvIaANEpcPQPQT--~EHl~AleIigi--k~iiIvQNKIDlV  153 (415)
T COG5257          87 RVSFVDAPGHETL---------MATMLSGAALMDGALLVIAANEPCPQPQT--REHLMALEIIGI--KNIIIVQNKIDLV  153 (415)
T ss_pred             EEEEeeCCchHHH---------HHHHhcchhhhcceEEEEecCCCCCCCch--HHHHHHHhhhcc--ceEEEEeccccee
Confidence            6779999999543         2223332 3458999999997655 3444  333445554432  2458899999999


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      +.+..++-++.++.|...                    .+..++|+||+||..+.|++.|+++|.+.+|..
T Consensus       154 ~~E~AlE~y~qIk~FvkG--------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         154 SRERALENYEQIKEFVKG--------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             cHHHHHHHHHHHHHHhcc--------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            999888888888766543                    456788999999999999999999999987763

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.44  E-value=6.6e-13  Score=137.09  Aligned_cols=114  Identities=10%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-Cch-hhhhhHHHHHHHHhhccCC-eEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPM-TFMSNMLYACSILYKTRLP-LVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~-~~~~~~l~~~~~l~~~~~P-~IlVlNK  240 (426)
                      .+..+.|+||||+.++.      ..+...+  ..+|++|+|||+..+. ... .+.......+.++...++| +|+++||
T Consensus        83 ~~~~i~liDtPGh~df~------~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK  154 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFI------KNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK  154 (447)
T ss_pred             CCEEEEEEECCCHHHHH------HHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence            45789999999998762      1222222  4579999999998762 210 0001113344456677886 5778999


Q ss_pred             CCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          241 TDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       241 iDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +|+...    ....++.+.++.+...              .+..    ....++||+||++|.|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~ei~~~l~~--------------~g~~----~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        155 MDATTPKYSKARYDEIVKEVSSYLKK--------------VGYN----PDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHH--------------cCCC----cccceEEEEeccccccccc
Confidence            998732    2222233333322211              1100    1236899999999999864

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.40  E-value=7.9e-12  Score=111.09  Aligned_cols=164  Identities=20%  Similarity=0.241  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccc---cccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP---FAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~---~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...+|+|+|+-|+||||++.++.......     +...-+.++...   -|..++.                   |-+. 
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~-----t~~~~~~~s~k~kr~tTva~D~-------------------g~~~-   63 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVI-----TEADASSVSGKGKRPTTVAMDF-------------------GSIE-   63 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccce-----eeccccccccccccceeEeecc-------------------cceE-
Confidence            45689999999999999999999875311     000001111111   1111111                   1111 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                       ...+..+.|++||||.++       ..+++.+... +.-++++||+++.....     ...+.
T Consensus        64 -----------------~~~~~~v~LfgtPGq~RF-------~fm~~~l~~g-a~gaivlVDss~~~~~~-----a~~ii  113 (187)
T COG2229          64 -----------------LDEDTGVHLFGTPGQERF-------KFMWEILSRG-AVGAIVLVDSSRPITFH-----AEEII  113 (187)
T ss_pred             -----------------EcCcceEEEecCCCcHHH-------HHHHHHHhCC-cceEEEEEecCCCcchH-----HHHHH
Confidence                             124478899999999987       4555555433 68899999998766541     13445


Q ss_pred             HHHhhcc-CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          225 SILYKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~-~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .++...+ +|++|++||.|+....-...+.+.+..                        . ....++|+++|..++|..+
T Consensus       114 ~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~------------------------~-~~~~~vi~~~a~e~~~~~~  168 (187)
T COG2229         114 DFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL------------------------E-LLSVPVIEIDATEGEGARD  168 (187)
T ss_pred             HHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh------------------------c-cCCCceeeeecccchhHHH
Confidence            5556566 999999999999986544344443331                        0 0257899999999999999


Q ss_pred             HHHHHHHH
Q 014354          304 YFKAVEES  311 (426)
Q Consensus       304 l~~~l~~~  311 (426)
                      .+..+...
T Consensus       169 ~L~~ll~~  176 (187)
T COG2229         169 QLDVLLLK  176 (187)
T ss_pred             HHHHHHhh
Confidence            88877654

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.40  E-value=3.8e-12  Score=110.63  Aligned_cols=163  Identities=19%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +-.+|.|+|..||||||++++|.+.....        .+|       +-.+.+                      .++. 
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~--------i~p-------t~gf~I----------------------ktl~-   56 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDT--------ISP-------TLGFQI----------------------KTLE-   56 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccc--------cCC-------ccceee----------------------EEEE-
Confidence            45789999999999999999999986321        111       111111                      1111 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .+++++.+||--|+....      .....+|  +..|.+|||||++....-+.-.......+..-
T Consensus        57 ---------------~~~~~L~iwDvGGq~~lr------~~W~nYf--estdglIwvvDssD~~r~~e~~~~L~~lL~ee  113 (185)
T KOG0073|consen   57 ---------------YKGYTLNIWDVGGQKTLR------SYWKNYF--ESTDGLIWVVDSSDRMRMQECKQELTELLVEE  113 (185)
T ss_pred             ---------------ecceEEEEEEcCCcchhH------HHHHHhh--hccCeEEEEEECchHHHHHHHHHHHHHHHhhh
Confidence                           366899999999995531      1122233  23589999999954332222111111111112


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +-.+.|++|+.||.|+...-....+...+.                       +++.  -...+++.+||.+|+++.+=+
T Consensus       114 rlaG~~~Lvlank~dl~~~l~~~~i~~~~~-----------------------L~~l~ks~~~~l~~cs~~tge~l~~gi  170 (185)
T KOG0073|consen  114 RLAGAPLLVLANKQDLPGALSLEEISKALD-----------------------LEELAKSHHWRLVKCSAVTGEDLLEGI  170 (185)
T ss_pred             hhcCCceEEEEecCcCccccCHHHHHHhhC-----------------------HHHhccccCceEEEEeccccccHHHHH
Confidence            245689999999999985422222221111                       0111  235789999999999999988


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      +||+..+-+
T Consensus       171 dWL~~~l~~  179 (185)
T KOG0073|consen  171 DWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHH
Confidence            998876655

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=1.9e-12  Score=121.03  Aligned_cols=147  Identities=15%  Similarity=0.156  Sum_probs=110.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccc----------ccccc----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPF----------AANID----  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~----------~t~i~----  119 (426)
                      ..+.+....++.+|+|+|++|||||||||.|.|...+..+.+.+.+...     ....+.+          -.|+.    
T Consensus        19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~   98 (248)
T COG1116          19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLE   98 (248)
T ss_pred             eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhh
Confidence            6677778889999999999999999999999999999888877655421     1111111          11111    


Q ss_pred             hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHHHHHHH
Q 014354          120 IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA  192 (426)
Q Consensus       120 ~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~~l~~~  192 (426)
                      ++      ..-+..+.++.+|+.....-...  .+|+||+|++++|+++..+++++++|.| |-.+..++..+...+.+.
T Consensus        99 ~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l  176 (248)
T COG1116          99 LRGKSKAEARERAKELLELVGLAGFEDKYPH--QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL  176 (248)
T ss_pred             ccccchHhHHHHHHHHHHHcCCcchhhcCcc--ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence            11      11246778999999877666554  6899999999999999999999999999 888887888888888888


Q ss_pred             HHhcCCcEEEEEEeC
Q 014354          193 FASTFPTVVTYVVDT  207 (426)
Q Consensus       193 ~~~~~~d~vl~VVDa  207 (426)
                      +......++++-.|.
T Consensus       177 w~~~~~TvllVTHdi  191 (248)
T COG1116         177 WEETRKTVLLVTHDV  191 (248)
T ss_pred             HHhhCCEEEEEeCCH
Confidence            877665555554444

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=1.4e-12  Score=117.99  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      -...++|+++|.+|+|||-||.+++...+...-+..|.     |.-...+..++                          
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG-----vef~t~t~~vd--------------------------   59 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG-----VEFATRTVNVD--------------------------   59 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCccccccee-----EEEEeeceeec--------------------------
Confidence            34668899999999999999999999988754332221     11101000000                          


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                       .+-...+||||+|++++.      .....+++  .+..+++|-|.++..+-   . ++..++.
T Consensus        60 -----------------~k~vkaqIWDTAGQERyr------AitSaYYr--gAvGAllVYDITr~~Tf---e-nv~rWL~  110 (222)
T KOG0087|consen   60 -----------------GKTVKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITRRQTF---E-NVERWLK  110 (222)
T ss_pred             -----------------CcEEEEeeecccchhhhc------cccchhhc--ccceeEEEEechhHHHH---H-HHHHHHH
Confidence                             233677999999998872      11122222  24566777777654332   2 1222333


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .++   ..+++++||.||+||...+.+.  .++-+.+.                      + .....++.+||+.+++|.
T Consensus       111 ELRdhad~nivimLvGNK~DL~~lraV~--te~~k~~A----------------------e-~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen  111 ELRDHADSNIVIMLVGNKSDLNHLRAVP--TEDGKAFA----------------------E-KEGLFFLETSALDATNVE  165 (222)
T ss_pred             HHHhcCCCCeEEEEeecchhhhhccccc--hhhhHhHH----------------------H-hcCceEEEecccccccHH
Confidence            333   5689999999999998743211  01111111                      1 123568999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          303 AYFKAVEESA  312 (426)
Q Consensus       303 ~l~~~l~~~~  312 (426)
                      ..|..+...+
T Consensus       166 ~aF~~~l~~I  175 (222)
T KOG0087|consen  166 KAFERVLTEI  175 (222)
T ss_pred             HHHHHHHHHH
Confidence            9886555433

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.37  E-value=1.5e-11  Score=116.06  Aligned_cols=185  Identities=17%  Similarity=0.237  Sum_probs=105.5

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ....+..|.|+|..|+|||||+|+|.+.....            ++..+.++.+..+.+.                    
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~------------v~~vg~~t~~~~~~~~--------------------   82 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKE------------VSKVGVGTDITTRLRL--------------------   82 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCce------------eeecccCCCchhhHHh--------------------
Confidence            35567788899999999999999999654331            3222222211111111                    


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNML  221 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l  221 (426)
                                       ...+.-++||||||+.+..... .....+.+++  ...|++++++++....-  +..|+....
T Consensus        83 -----------------~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~d~~f~~dVi  143 (296)
T COG3596          83 -----------------SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVI  143 (296)
T ss_pred             -----------------hccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccCCHHHHHHHH
Confidence                             0233678999999998852111 1122233333  23589999999865432  234443322


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG  300 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~g  300 (426)
                           ......|+++|+|.+|+..+-.  .|...-....       .....+.+.....+..++ .-.|++.+|+..++|
T Consensus       144 -----~~~~~~~~i~~VtQ~D~a~p~~--~W~~~~~~p~-------~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg  209 (296)
T COG3596         144 -----ILGLDKRVLFVVTQADRAEPGR--EWDSAGHQPS-------PAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG  209 (296)
T ss_pred             -----HhccCceeEEEEehhhhhcccc--ccccccCCCC-------HHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc
Confidence                 2234589999999999887631  1110000000       001111111122222222 235789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      +..|..++..++|.
T Consensus       210 l~~l~~ali~~lp~  223 (296)
T COG3596         210 LKELVRALITALPV  223 (296)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999998775

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.36  E-value=3.4e-12  Score=141.73  Aligned_cols=132  Identities=23%  Similarity=0.355  Sum_probs=80.4

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.||||||+..+..       +. ......+|++++|+|+..++.++++.     .+..+...++|+|+|+||+|+..
T Consensus       526 p~i~fiDTPGhe~F~~-------lr-~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        526 PGLLFIDTPGHEAFTS-------LR-KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLIP  592 (1049)
T ss_pred             CcEEEEECCCcHHHHH-------HH-HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCcc
Confidence            5799999999866521       11 11224589999999999888776643     34456667899999999999975


Q ss_pred             hHh-------HHHHHHH----HHHHHHHhccccchhhhHHHHhhh------hHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          246 HEF-------ALEWMQD----FEVFQAAISSDHSYTSTLTNSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       246 ~~~-------~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ...       ...+...    +..+...+..   ....+ ...+.      ...+|+..+++|+|||++|+|+++|+.+|
T Consensus       593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~---v~~~L-~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l  668 (1049)
T PRK14845        593 GWNISEDEPFLLNFNEQDQHALTELEIKLYE---LIGKL-YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMV  668 (1049)
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHHHHHH---HhhHH-HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHH
Confidence            321       0111100    0111000000   00000 11111      12456678899999999999999999888


Q ss_pred             HHHHHH
Q 014354          309 EESAQE  314 (426)
Q Consensus       309 ~~~~~~  314 (426)
                      ....+.
T Consensus       669 ~~l~~~  674 (1049)
T PRK14845        669 AGLAQK  674 (1049)
T ss_pred             HHhhHH
Confidence            765443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.36  E-value=1.3e-12  Score=130.40  Aligned_cols=181  Identities=19%  Similarity=0.268  Sum_probs=112.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.+...|+-+-..|||||..+|+.....             ++         .|.  .-.+++..+.+....||.-...
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~-------------~~---------~Re--m~~Q~LDsMdiERERGITIKaq   62 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGG-------------LS---------ERE--MRAQVLDSMDIERERGITIKAQ   62 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcC-------------cC---------hHH--HHHHhhhhhhhHhhcCceEEee
Confidence            35567889999999999999999987532             11         111  1122333333333344432211


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      ...  +.+.    ...+..+.+.|||||||.+|.+      .+.+.+  +.|.-+++||||+.|...++..     -+-+
T Consensus        63 ~v~--l~Yk----~~~g~~Y~lnlIDTPGHVDFsY------EVSRSL--AACEGalLvVDAsQGveAQTlA-----N~Yl  123 (603)
T COG0481          63 AVR--LNYK----AKDGETYVLNLIDTPGHVDFSY------EVSRSL--AACEGALLVVDASQGVEAQTLA-----NVYL  123 (603)
T ss_pred             EEE--EEEE----eCCCCEEEEEEcCCCCccceEE------EehhhH--hhCCCcEEEEECccchHHHHHH-----HHHH
Confidence            000  0000    0002447788999999999843      222222  3367899999999999988733     2223


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....+.-+|-|+||+|+...+- .+..+.++....                       ......+.+||++|.||+++++
T Consensus       124 Ale~~LeIiPViNKIDLP~Adp-ervk~eIe~~iG-----------------------id~~dav~~SAKtG~gI~~iLe  179 (603)
T COG0481         124 ALENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIG-----------------------IDASDAVLVSAKTGIGIEDVLE  179 (603)
T ss_pred             HHHcCcEEEEeeecccCCCCCH-HHHHHHHHHHhC-----------------------CCcchheeEecccCCCHHHHHH
Confidence            4456788899999999987531 123333332211                       1234689999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      +|...+|.
T Consensus       180 ~Iv~~iP~  187 (603)
T COG0481         180 AIVEKIPP  187 (603)
T ss_pred             HHHhhCCC
Confidence            99999876

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.36  E-value=8.3e-12  Score=124.48  Aligned_cols=183  Identities=17%  Similarity=0.204  Sum_probs=111.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ....|+||-+...|||||+..|+.+.-.             ...   ...+       .+.+|..=.+....||..    
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGt-------------f~~---~e~v-------~ERvMDSnDlEkERGITI----   56 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGT-------------FRE---REEV-------AERVMDSNDLEKERGITI----   56 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccc-------------ccc---ccch-------hhhhcCccchhhhcCcEE----
Confidence            4467999999999999999999987421             100   0000       011222112222233321    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      |++..       ...++++.+.|+|||||.+|.   ..-..++.+     .|.++++|||..|.-+++     .+.+...
T Consensus        57 LaKnT-------av~~~~~~INIvDTPGHADFG---GEVERvl~M-----VDgvlLlVDA~EGpMPQT-----rFVlkKA  116 (603)
T COG1217          57 LAKNT-------AVNYNGTRINIVDTPGHADFG---GEVERVLSM-----VDGVLLLVDASEGPMPQT-----RFVLKKA  116 (603)
T ss_pred             Eeccc-------eeecCCeEEEEecCCCcCCcc---chhhhhhhh-----cceEEEEEEcccCCCCch-----hhhHHHH
Confidence            11110       001467899999999999972   222223322     489999999999999987     5566777


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC--------
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA--------  299 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~--------  299 (426)
                      ...+++-|+|+||+|+...+-..-+-+.+..|...               +..  .-.-..|++..||+.|.        
T Consensus       117 l~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L---------------~A~--deQLdFPivYAS~~~G~a~~~~~~~  179 (603)
T COG1217         117 LALGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL---------------GAT--DEQLDFPIVYASARNGTASLDPEDE  179 (603)
T ss_pred             HHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh---------------CCC--hhhCCCcEEEeeccCceeccCcccc
Confidence            78899999999999998753221111122211111               000  00123689999999876        


Q ss_pred             --CHHHHHHHHHHHHHH
Q 014354          300 --GIEAYFKAVEESAQE  314 (426)
Q Consensus       300 --gv~~l~~~l~~~~~~  314 (426)
                        .+.-||+.|.++.|.
T Consensus       180 ~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         180 ADDMAPLFETILDHVPA  196 (603)
T ss_pred             ccchhHHHHHHHHhCCC
Confidence              567778888777665

>PRK12740 elongation factor G; Reviewed

Probab=99.36  E-value=6.2e-12  Score=136.65  Aligned_cols=70  Identities=23%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      +++++.||||||+.++.      ..+...+  ..+|++++|+|+..+.....     ...+..+...++|.++|+||+|+
T Consensus        58 ~~~~i~liDtPG~~~~~------~~~~~~l--~~aD~vllvvd~~~~~~~~~-----~~~~~~~~~~~~p~iiv~NK~D~  124 (668)
T PRK12740         58 KGHKINLIDTPGHVDFT------GEVERAL--RVLDGAVVVVCAVGGVEPQT-----ETVWRQAEKYGVPRIIFVNKMDR  124 (668)
T ss_pred             CCEEEEEEECCCcHHHH------HHHHHHH--HHhCeEEEEEeCCCCcCHHH-----HHHHHHHHHcCCCEEEEEECCCC
Confidence            56899999999997641      1222222  34799999999988765443     22334455678999999999998


Q ss_pred             CCh
Q 014354          244 AQH  246 (426)
Q Consensus       244 ~~~  246 (426)
                      ...
T Consensus       125 ~~~  127 (668)
T PRK12740        125 AGA  127 (668)
T ss_pred             CCC
Confidence            864

>PTZ00258 GTP-binding protein; Provisional

Probab=99.36  E-value=1.2e-11  Score=124.64  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .....|+|+|.||||||||+|+|++...             .++++|++|    +              .||-|++..  
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-------------~v~n~pftT----i--------------~p~~g~v~~--   65 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-------------PAENFPFCT----I--------------DPNTARVNV--   65 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcc-------------cccCCCCCc----c--------------cceEEEEec--
Confidence            4567899999999999999999988763             267778776    1              222333321  


Q ss_pred             cccccHHHHHHHHH-HHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCC
Q 014354          147 LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTP  208 (426)
Q Consensus       147 ~ls~~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~  208 (426)
                       ....++.+..... ...-..++.|+||||+...... ..++..+...+  ..+|++++|||++
T Consensus        66 -~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~I--r~aD~il~VVd~f  126 (390)
T PTZ00258         66 -PDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHI--RAVDGIYHVVRAF  126 (390)
T ss_pred             -ccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHH--HHCCEEEEEEeCC
Confidence             0011111111110 0011357999999999864321 11333333322  4479999999986

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.4e-11  Score=122.05  Aligned_cols=108  Identities=16%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhccCC-eE
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRLP-LV  235 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~~P-~I  235 (426)
                      .+.+.|+|+|||.++         +..+... ..+|++|+|||+..+       ...++..     .+-+.+-.++. .|
T Consensus        84 k~~~tIiDaPGHrdF---------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-----H~~La~tlGi~~lI  149 (428)
T COG5256          84 KYNFTIIDAPGHRDF---------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-----HAFLARTLGIKQLI  149 (428)
T ss_pred             CceEEEeeCCchHHH---------HHHhhcchhhccEEEEEEECCCCccccccccCCchhH-----HHHHHHhcCCceEE
Confidence            467899999998665         2233322 347999999999987       5555533     22223344444 57


Q ss_pred             EEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHH
Q 014354          236 LAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       236 lVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +++||+|.++-.  +..++...+..|.              +..+     |. ..+++|||||.+|.|+.+.-
T Consensus       150 VavNKMD~v~wde~rf~ei~~~v~~l~--------------k~~G-----~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         150 VAVNKMDLVSWDEERFEEIVSEVSKLL--------------KMVG-----YNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             EEEEcccccccCHHHHHHHHHHHHHHH--------------HHcC-----CCccCCeEEecccccCCcccccC
Confidence            789999999732  2222222222211              1111     11 24789999999999987653

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=7.8e-12  Score=106.85  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      -.++|+++|..|+|||.|++++++..++.|....| +.|--+    .+.                             . 
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgati-gvdfmi----ktv-----------------------------e-   50 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI-GVDFMI----KTV-----------------------------E-   50 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee-eeeEEE----EEE-----------------------------E-
Confidence            35789999999999999999999998886543322 111100    000                             0 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCch-hhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~-~~~~~~l~~~  224 (426)
                                   ..+....++||||+|+.++.      .+...+++++  +.+++|-|.+.  .++-. +|+..    .
T Consensus        51 -------------v~gekiklqiwdtagqerfr------sitqsyyrsa--halilvydiscqpsfdclpewlre----i  105 (213)
T KOG0095|consen   51 -------------VNGEKIKLQIWDTAGQERFR------SITQSYYRSA--HALILVYDISCQPSFDCLPEWLRE----I  105 (213)
T ss_pred             -------------ECCeEEEEEEeeccchHHHH------HHHHHHhhhc--ceEEEEEecccCcchhhhHHHHHH----H
Confidence                         01345789999999998872      2333345555  45555555543  33222 23222    2


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .......+-.|+|.||+|+...+++. .+-+++..                     .     .+.-++.+||+..++|+.
T Consensus       106 e~yan~kvlkilvgnk~d~~drrevp~qigeefs~---------------------~-----qdmyfletsakea~nve~  159 (213)
T KOG0095|consen  106 EQYANNKVLKILVGNKIDLADRREVPQQIGEEFSE---------------------A-----QDMYFLETSAKEADNVEK  159 (213)
T ss_pred             HHHhhcceEEEeeccccchhhhhhhhHHHHHHHHH---------------------h-----hhhhhhhhcccchhhHHH
Confidence            22334456679999999998875432 22222221                     1     112267899999999999


Q ss_pred             HHHHHHHHHH
Q 014354          304 YFKAVEESAQ  313 (426)
Q Consensus       304 l~~~l~~~~~  313 (426)
                      ||..+.-.+.
T Consensus       160 lf~~~a~rli  169 (213)
T KOG0095|consen  160 LFLDLACRLI  169 (213)
T ss_pred             HHHHHHHHHH
Confidence            9877765443

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=4.2e-11  Score=115.41  Aligned_cols=178  Identities=22%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ..++|+|+..||||||.++|......           .+....|+.+.               .|+.-..|..|-.....
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~ST-----------aAFDk~pqS~e---------------RgiTLDLGFS~~~v~~p   61 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGST-----------AAFDKHPQSTE---------------RGITLDLGFSTMTVLSP   61 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccc-----------hhhccCCcccc---------------cceeEeecceeeecccc
Confidence            68999999999999999999765311           12333333321               00000011111100111


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-H-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      ..+-        .+...++.++|.||+..          +++.+ . +.--|+.++|||+..|...++-     .++-+-
T Consensus        62 arLp--------q~e~lq~tlvDCPGHas----------LIRtiiggaqiiDlm~lviDv~kG~QtQtA-----EcLiig  118 (522)
T KOG0461|consen   62 ARLP--------QGEQLQFTLVDCPGHAS----------LIRTIIGGAQIIDLMILVIDVQKGKQTQTA-----ECLIIG  118 (522)
T ss_pred             cccC--------ccccceeEEEeCCCcHH----------HHHHHHhhhheeeeeeEEEehhcccccccc-----hhhhhh
Confidence            1111        13557899999999843          23322 2 2336999999999999887652     122111


Q ss_pred             hhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHh--hhhcCCceEEeecccC----CC
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALD--EFYKNLKSVGVSSVSG----AG  300 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~vv~vSA~~g----~g  300 (426)
                      ...-...|+|+||+|........ .+-+..+.+                  .+.++  .|.++.|++++||+.|    ++
T Consensus       119 ~~~c~klvvvinkid~lpE~qr~ski~k~~kk~------------------~KtLe~t~f~g~~PI~~vsa~~G~~~~~~  180 (522)
T KOG0461|consen  119 ELLCKKLVVVINKIDVLPENQRASKIEKSAKKV------------------RKTLESTGFDGNSPIVEVSAADGYFKEEM  180 (522)
T ss_pred             hhhccceEEEEeccccccchhhhhHHHHHHHHH------------------HHHHHhcCcCCCCceeEEecCCCccchhH
Confidence            12234568999999998764322 222111112                  22221  4567799999999999    89


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      +.+|.++|...+.+
T Consensus       181 i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  181 IQELKEALESRIFE  194 (522)
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999988877544

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.30  E-value=6.2e-12  Score=108.84  Aligned_cols=167  Identities=17%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++|+|||.+|+||||||-+++...+.....+. ++.|-.+-.+.                                  
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t-IGvDFkvk~m~----------------------------------   54 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT-IGVDFKVKVMQ----------------------------------   54 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCce-eeeeEEEEEEE----------------------------------
Confidence            4578999999999999999999998766433221 12221110000                                  


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC--CCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~--~~~~~~~~~~~l~~~~  225 (426)
                                   ...+...+-||||+|++++.+...      .+++.  +--+|+|-|.+.  .+...+.|...+   +
T Consensus        55 -------------vdg~~~KlaiWDTAGqErFRtLTp------SyyRg--aqGiIlVYDVT~Rdtf~kLd~W~~El---d  110 (209)
T KOG0080|consen   55 -------------VDGKRLKLAIWDTAGQERFRTLTP------SYYRG--AQGIILVYDVTSRDTFVKLDIWLKEL---D  110 (209)
T ss_pred             -------------EcCceEEEEEEeccchHhhhccCH------hHhcc--CceeEEEEEccchhhHHhHHHHHHHH---H
Confidence                         013457899999999998732111      12222  345555666543  333333332221   1


Q ss_pred             H-HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          226 I-LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       226 ~-l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      . .-..++-.++|.||+|..+.+.+.+-    +            ...+++.+         ..-++.+||++.+||...
T Consensus       111 ~Ystn~diikmlVgNKiDkes~R~V~re----E------------G~kfAr~h---------~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen  111 LYSTNPDIIKMLVGNKIDKESERVVDRE----E------------GLKFARKH---------RCLFIECSAKTRENVQCC  165 (209)
T ss_pred             hhcCCccHhHhhhcccccchhcccccHH----H------------HHHHHHhh---------CcEEEEcchhhhccHHHH
Confidence            1 11345666889999997654322100    0            11122222         245889999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 014354          305 FKAVEESAQEFMET  318 (426)
Q Consensus       305 ~~~l~~~~~~~~~~  318 (426)
                      |+.+...+.+.+..
T Consensus       166 FeelveKIi~tp~l  179 (209)
T KOG0080|consen  166 FEELVEKIIETPSL  179 (209)
T ss_pred             HHHHHHHHhcCcch
Confidence            99999888775543

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.28  E-value=5.3e-11  Score=112.66  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-------ccccccccccccc-----------
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-------PAVMTLPFAANID-----------  119 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-------~~v~~~~~~t~i~-----------  119 (426)
                      ...+.+....++.+++|+||+|||||||++.|+|...+..+.+.+.+..       -.+.++|+...++           
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V   98 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV   98 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence            3666777778889999999999999999999999888888877766543       1244445543332           


Q ss_pred             ---------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 ---------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ---------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                     -.+...++++++.+|+.....-.  +..||+|+.|++.+|+++..+++++++|.|
T Consensus        99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~~p~lllLDEP  166 (254)
T COG1121          99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQNPDLLLLDEP  166 (254)
T ss_pred             HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence                           01234567788888887543322  235899999999999999999999999999

>smart00053 DYNc Dynamin, GTPase

Probab=99.28  E-value=9.1e-11  Score=111.19  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=52.4

Q ss_pred             CCCEEEEcCCCcccccchh---chHHHHHHHH---HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354          165 HLDYVLVDTPGQIEIFTWS---ASGAIITEAF---ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~---~~~~~l~~~~---~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl  238 (426)
                      .+++.||||||+.......   .....+.+..   -....+++++|+|+...+...+.    +.+.+.+...+.|+|+|+
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~Vi  199 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVI  199 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEE
Confidence            3799999999996431111   1122222222   22345799999999887766541    344555667889999999


Q ss_pred             ecCCCCChH
Q 014354          239 NKTDVAQHE  247 (426)
Q Consensus       239 NKiDl~~~~  247 (426)
                      ||+|...+.
T Consensus       200 TK~D~~~~~  208 (240)
T smart00053      200 TKLDLMDEG  208 (240)
T ss_pred             ECCCCCCcc
Confidence            999998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.28  E-value=1.2e-11  Score=105.74  Aligned_cols=159  Identities=20%  Similarity=0.302  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      +..+|+|.||+|||+|+.++....++.++.. .++.|-.+-..+      +                 +           
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYit-TiGvDfkirTv~------i-----------------~-----------   53 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYIT-TIGVDFKIRTVD------I-----------------N-----------   53 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEE-EeeeeEEEEEee------c-----------------C-----------
Confidence            4568999999999999999998877654332 222221111000      0                 0           


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chh-hhhhHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYACSI  226 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~-~~~~~l~~~~~  226 (426)
                                   +..+.++||||+|++.+.      .+...+++.  .+.+++|-|.+++.+  ... |+..+...   
T Consensus        54 -------------G~~VkLqIwDtAGqErFr------titstyyrg--thgv~vVYDVTn~ESF~Nv~rWLeei~~n---  109 (198)
T KOG0079|consen   54 -------------GDRVKLQIWDTAGQERFR------TITSTYYRG--THGVIVVYDVTNGESFNNVKRWLEEIRNN---  109 (198)
T ss_pred             -------------CcEEEEEEeecccHHHHH------HHHHHHccC--CceEEEEEECcchhhhHhHHHHHHHHHhc---
Confidence                         234789999999998872      222333333  356666667665543  322 22221111   


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                        -..+|-|||.||.|......+..  ++.+.+              +.         .-....|.+||+...+++..|.
T Consensus       110 --cdsv~~vLVGNK~d~~~RrvV~t--~dAr~~--------------A~---------~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen  110 --CDSVPKVLVGNKNDDPERRVVDT--EDARAF--------------AL---------QMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             --CccccceecccCCCCccceeeeh--HHHHHH--------------HH---------hcCchheehhhhhcccchHHHH
Confidence              12578899999999887643211  111110              11         1246689999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      .|.+....
T Consensus       163 cit~qvl~  170 (198)
T KOG0079|consen  163 CITKQVLQ  170 (198)
T ss_pred             HHHHHHHH
Confidence            88876554

>cd01850 CDC_Septin CDC/Septin

Probab=99.27  E-value=3.2e-11  Score=117.13  Aligned_cols=55  Identities=18%  Similarity=0.223  Sum_probs=36.7

Q ss_pred             CCcEEEEEEeCCC-CCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354          197 FPTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (426)
Q Consensus       197 ~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~  257 (426)
                      .+++++|++++.. ++.+.+     +..+..+.. .+|+|+|+||+|+....++....+.+.
T Consensus       114 rvh~~ly~i~~~~~~l~~~D-----~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~  169 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLD-----IEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIM  169 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHH-----HHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHH
Confidence            4789999999764 444433     223344443 799999999999988765544444443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.27  E-value=3.1e-11  Score=116.94  Aligned_cols=178  Identities=20%  Similarity=0.315  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-ccc--ccccccc---ccchhhhHHHHHHHHHcCCCCCCC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-PAV--MTLPFAA---NIDIRDTIRYKEVMKQFNLGPNGG  140 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-~~v--~~~~~~t---~i~~r~~~~~~~~~~~~~l~~ng~  140 (426)
                      +...+.+-+|...-|||||+.+|+....+.-.      .- ..+  ......+   .++..-      ++.-+.-....|
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~e------DQla~l~~dS~~~~t~g~~~D~AL------LvDGL~AEREQG   71 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYE------DQLASLERDSKRKGTQGEKIDLAL------LVDGLEAEREQG   71 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhH------HHHHHHhcccccccCCCCccchhh------hhhhhHHHHhcC
Confidence            34567899999999999999999987644310      00 000  0000011   111000      000000000123


Q ss_pred             cc--cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354          141 IL--TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       141 i~--~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      |.  ...++|++             .+.++++.|||||..+-.....|.        .-||++|++||+..++-.++...
T Consensus        72 ITIDVAYRyFsT-------------~KRkFIiADTPGHeQYTRNMaTGA--------STadlAIlLVDAR~Gvl~QTrRH  130 (431)
T COG2895          72 ITIDVAYRYFST-------------EKRKFIIADTPGHEQYTRNMATGA--------STADLAILLVDARKGVLEQTRRH  130 (431)
T ss_pred             ceEEEEeeeccc-------------ccceEEEecCCcHHHHhhhhhccc--------ccccEEEEEEecchhhHHHhHHH
Confidence            32  12244443             447899999999987632221111        34799999999999988776433


Q ss_pred             hHHHHHHHHhhccCC-eEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeec
Q 014354          219 NMLYACSILYKTRLP-LVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS  295 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P-~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA  295 (426)
                      .  +++   .-.++. +|+++||||++...  ....+..++..|...+              +      .....+||+||
T Consensus       131 s--~I~---sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L--------------~------~~~~~~IPiSA  185 (431)
T COG2895         131 S--FIA---SLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQL--------------G------LKDVRFIPISA  185 (431)
T ss_pred             H--HHH---HHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHc--------------C------CCcceEEechh
Confidence            2  222   233554 46789999999853  3445666665544432              1      12357999999


Q ss_pred             ccCCCHH
Q 014354          296 VSGAGIE  302 (426)
Q Consensus       296 ~~g~gv~  302 (426)
                      +.|.||-
T Consensus       186 l~GDNV~  192 (431)
T COG2895         186 LLGDNVV  192 (431)
T ss_pred             ccCCccc
Confidence            9999975

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.27  E-value=3.6e-11  Score=131.63  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.+.|+|+|+.++|||||+++|+..........  .+         .++..|...      .-++.|+.-+.+.... . 
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~--~g---------~~~~~D~~~------~E~~rgiTi~~~~~~~-~-   79 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL--AG---------EQLALDFDE------EEQARGITIKAANVSM-V-   79 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh--cC---------cceecCccH------HHHHhhhhhhccceEE-E-
Confidence            456899999999999999999997653321110  00         000011000      0011111111111100 0 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      |.  .         ...++++.||||||+.++.      ..+...+  ..+|++|+|||+..+...++     ...+..+
T Consensus        80 ~~--~---------~~~~~~i~liDtPG~~df~------~~~~~~l--~~~D~avlVvda~~g~~~~t-----~~~~~~~  135 (731)
T PRK07560         80 HE--Y---------EGKEYLINLIDTPGHVDFG------GDVTRAM--RAVDGAIVVVDAVEGVMPQT-----ETVLRQA  135 (731)
T ss_pred             EE--e---------cCCcEEEEEEcCCCccChH------HHHHHHH--HhcCEEEEEEECCCCCCccH-----HHHHHHH
Confidence            00  0         0135788999999998852      2222222  34699999999999887765     2344444


Q ss_pred             hhccCCeEEEEecCCCCC
Q 014354          228 YKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~  245 (426)
                      ...+.|.|+++||+|+..
T Consensus       136 ~~~~~~~iv~iNK~D~~~  153 (731)
T PRK07560        136 LRERVKPVLFINKVDRLI  153 (731)
T ss_pred             HHcCCCeEEEEECchhhc
Confidence            556789999999999874

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.26  E-value=4.4e-11  Score=108.19  Aligned_cols=131  Identities=21%  Similarity=0.303  Sum_probs=68.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|+|+|++|||||+|+.+|.......           .++.+.                       +|.+....    
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-----------T~tS~e-----------------------~n~~~~~~----   44 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-----------TVTSME-----------------------NNIAYNVN----   44 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS--------------B---SS-----------------------EEEECCGS----
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCC-----------eecccc-----------------------CCceEEee----
Confidence            4679999999999999999999874321           222221                       11111110    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCc----hhhhhhHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANP----MTFMSNMLYA  223 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~----~~~~~~~l~~  223 (426)
                                   ...+..+.+||+|||.+..      ..+.+. .....+-.||||||+......    ..++..++..
T Consensus        45 -------------~~~~~~~~lvD~PGH~rlr------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~  105 (181)
T PF09439_consen   45 -------------NSKGKKLRLVDIPGHPRLR------SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD  105 (181)
T ss_dssp             -------------STCGTCECEEEETT-HCCC------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred             -------------cCCCCEEEEEECCCcHHHH------HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence                         0234688999999997752      223332 122346799999999642211    1222222211


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~  257 (426)
                      .. ......|++|+.||.|+........+...++
T Consensus       106 ~~-~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen  106 TE-VQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             HH-CCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             hh-hccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            11 1245789999999999987543333444333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=5.2e-11  Score=102.29  Aligned_cols=162  Identities=19%  Similarity=0.297  Sum_probs=96.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++++++|+.|+|||.||.+++...+...-              ..+-.++...++                 +.    
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDds--------------sHTiGveFgSrI-----------------in----   52 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDS--------------SHTIGVEFGSRI-----------------VN----   52 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccc--------------cceeeeeeccee-----------------ee----
Confidence            4568999999999999999999998765311              011111111111                 10    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTP--RSANPMTFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~  224 (426)
                                   ...+...++||||+|+.++       +.+.+ +++.+  .-+++|-|++  ..++..+   +.+.-.
T Consensus        53 -------------VGgK~vKLQIWDTAGQErF-------RSVtRsYYRGA--AGAlLVYD~TsrdsfnaLt---nWL~Da  107 (214)
T KOG0086|consen   53 -------------VGGKTVKLQIWDTAGQERF-------RSVTRSYYRGA--AGALLVYDITSRDSFNALT---NWLTDA  107 (214)
T ss_pred             -------------ecCcEEEEEEeecccHHHH-------HHHHHHHhccc--cceEEEEeccchhhHHHHH---HHHHHH
Confidence                         0134478999999999887       33333 33333  3344555554  3333322   223334


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +.+...++-+|++.||.|+.....+. +.+.-               .++++         ...-+..+||++|++|++-
T Consensus       108 R~lAs~nIvviL~GnKkDL~~~R~Vt-flEAs---------------~FaqE---------nel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen  108 RTLASPNIVVILCGNKKDLDPEREVT-FLEAS---------------RFAQE---------NELMFLETSALTGENVEEA  162 (214)
T ss_pred             HhhCCCcEEEEEeCChhhcChhhhhh-HHHHH---------------hhhcc---------cceeeeeecccccccHHHH
Confidence            55666777888999999998776432 11110               11111         1235788999999999998


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      |-...+.+..
T Consensus       163 Fl~c~~tIl~  172 (214)
T KOG0086|consen  163 FLKCARTILN  172 (214)
T ss_pred             HHHHHHHHHH
Confidence            8666655443

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.24  E-value=7.5e-11  Score=101.89  Aligned_cols=166  Identities=19%  Similarity=0.197  Sum_probs=102.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      -.++++++|..-+|||||+-+.+...+....          .+     |       +...-+-+.+++.           
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH----------ls-----T-------lQASF~~kk~n~e-----------   58 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKH----------LS-----T-------LQASFQNKKVNVE-----------   58 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhh----------HH-----H-------HHHHHhhcccccc-----------
Confidence            3478999999999999999999988765321          10     0       0000011111111           


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ....++-||||+|+.++   ++++.+.-     ..++-+++|.|.+..-+-+. ..+....++.+
T Consensus        59 ---------------d~ra~L~IWDTAGQErf---HALGPIYY-----RgSnGalLVyDITDrdSFqK-VKnWV~Elr~m  114 (218)
T KOG0088|consen   59 ---------------DCRADLHIWDTAGQERF---HALGPIYY-----RGSNGALLVYDITDRDSFQK-VKNWVLELRTM  114 (218)
T ss_pred             ---------------cceeeeeeeeccchHhh---hccCceEE-----eCCCceEEEEeccchHHHHH-HHHHHHHHHHH
Confidence                           23468999999999987   33333211     23467778888764332221 22223334556


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      .-..+..+||.||+|+.....+.  .++..              .++++         ..+.++.+||+.+.||.++|..
T Consensus       115 lGnei~l~IVGNKiDLEeeR~Vt--~qeAe--------------~YAes---------vGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen  115 LGNEIELLIVGNKIDLEEERQVT--RQEAE--------------AYAES---------VGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             hCCeeEEEEecCcccHHHhhhhh--HHHHH--------------HHHHh---------hchhheecccccccCHHHHHHH
Confidence            66788899999999987655331  11111              11111         1345788999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |.....+.
T Consensus       170 Lt~~MiE~  177 (218)
T KOG0088|consen  170 LTAKMIEH  177 (218)
T ss_pred             HHHHHHHH
Confidence            98877664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.23  E-value=6.6e-10  Score=109.86  Aligned_cols=156  Identities=17%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+++++|++|+||||++..|.+.....++++.+++.|+.-.    +.      ......+..+.++.    ++.. .
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~----~a------~eql~~~a~~~~i~----~~~~-~  176 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA----AA------IEQLQVWGERVGVP----VIAQ-K  176 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch----hh------HHHHHHHHHHcCce----EEEe-C
Confidence            45789999999999999999999999888888999988875211    00      00011111122211    1110 0


Q ss_pred             ccccc-HHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH------hcCCcEEEEEEeCCCCCCchhhhhh
Q 014354          147 LFTTK-FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA------STFPTVVTYVVDTPRSANPMTFMSN  219 (426)
Q Consensus       147 ~ls~~-~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~------~~~~d~vl~VVDa~~~~~~~~~~~~  219 (426)
                      .-... ..-...+..+...+++++||||||....  ...+...+.....      ...++-+++|+|+..+.+....   
T Consensus       177 ~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~---  251 (318)
T PRK10416        177 EGADPASVAFDAIQAAKARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ---  251 (318)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH---
Confidence            00000 0001123334567899999999998653  1222222222221      2347789999999865433221   


Q ss_pred             HHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          220 MLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       220 ~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                          .......--+.-+|+||.|....
T Consensus       252 ----a~~f~~~~~~~giIlTKlD~t~~  274 (318)
T PRK10416        252 ----AKAFHEAVGLTGIILTKLDGTAK  274 (318)
T ss_pred             ----HHHHHhhCCCCEEEEECCCCCCC
Confidence                11111122356799999996654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.23  E-value=5.8e-11  Score=110.90  Aligned_cols=149  Identities=18%  Similarity=0.145  Sum_probs=105.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------cccccccc---cc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------VMTLPFAA---NI  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------v~~~~~~t---~i  118 (426)
                      ....++....+.+++++|++||||||+|+.|.+...+..+.+.+.+.+..                 ..-+|+.|   ||
T Consensus        17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI   96 (309)
T COG1125          17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI   96 (309)
T ss_pred             eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH
Confidence            66777888889999999999999999999999998888888888766511                 11122221   11


Q ss_pred             c----------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHH
Q 014354          119 D----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGA  187 (426)
Q Consensus       119 ~----------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~  187 (426)
                      .          -+-.-+++++|..+|+.|..=.-..-+.||+|++|++.+++|+..++.++++|.| |-.++-++..+..
T Consensus        97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~  176 (309)
T COG1125          97 ATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE  176 (309)
T ss_pred             HhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHH
Confidence            1          1122357889999999985222222246899999999999999999999999999 8888766666655


Q ss_pred             HHHHHHHhcCCcEEEEEEeC
Q 014354          188 IITEAFASTFPTVVTYVVDT  207 (426)
Q Consensus       188 ~l~~~~~~~~~d~vl~VVDa  207 (426)
                      .+.+.-+.....+|++-.|.
T Consensus       177 e~~~lq~~l~kTivfVTHDi  196 (309)
T COG1125         177 EIKELQKELGKTIVFVTHDI  196 (309)
T ss_pred             HHHHHHHHhCCEEEEEecCH
Confidence            55554443333444444444

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=1.3e-10  Score=99.33  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..++.|+|...+|||||+-+.++..+... -+..++.+-.+-                             -+..+    
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~a-fvsTvGidFKvK-----------------------------Tvyr~----   66 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVK-----------------------------TVYRS----   66 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccc-eeeeeeeeEEEe-----------------------------Eeeec----
Confidence            45899999999999999999999876542 122222221110                             01111    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc---hhhhhhHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP---MTFMSNMLYACS  225 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~---~~~~~~~l~~~~  225 (426)
                                    .+..++++|||+|++.+.      .....++  ..++.++++.|.++..+-   ++|.    ....
T Consensus        67 --------------~kRiklQiwDTagqEryr------tiTTayy--RgamgfiLmyDitNeeSf~svqdw~----tqIk  120 (193)
T KOG0093|consen   67 --------------DKRIKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEESFNSVQDWI----TQIK  120 (193)
T ss_pred             --------------ccEEEEEEEecccchhhh------HHHHHHh--hccceEEEEEecCCHHHHHHHHHHH----HHhe
Confidence                          234789999999998752      2222233  335788888888653321   1211    1111


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....+.|+|||.||||+.+.+.+.  .+.              ...+.+.++         ..++.+||+.+.+|..+|
T Consensus       121 tysw~naqvilvgnKCDmd~eRvis--~e~--------------g~~l~~~LG---------fefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen  121 TYSWDNAQVILVGNKCDMDSERVIS--HER--------------GRQLADQLG---------FEFFETSAKENINVKQVF  175 (193)
T ss_pred             eeeccCceEEEEecccCCccceeee--HHH--------------HHHHHHHhC---------hHHhhhcccccccHHHHH
Confidence            1224689999999999998865321  011              112222333         247789999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ..+...+...
T Consensus       176 e~lv~~Ic~k  185 (193)
T KOG0093|consen  176 ERLVDIICDK  185 (193)
T ss_pred             HHHHHHHHHH
Confidence            9888766553

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=5e-11  Score=127.99  Aligned_cols=136  Identities=19%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC-cccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTS  144 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~-i~~~  144 (426)
                      ..+.+.|+|+|+..+|||||..+|+-..-..+..+.+........+.++.               .+.|+.-..+ +.+.
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~E---------------qeRGITI~saa~s~~   71 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQE---------------QERGITITSAATTLF   71 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHH---------------HhcCCEEeeeeeEEE
Confidence            34667899999999999999999998765554433333222222222211               1222222111 1221


Q ss_pred             cccccccHHHHHHHHHHHhc-CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          145 LNLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~-~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                        ++ ++.+.|||||||.+|.      ..+.+.+  .-+|.+|+|+|+..+..+++     .+.
T Consensus        72 ------------------~~~~~~iNlIDTPGHVDFt------~EV~rsl--rvlDgavvVvdaveGV~~QT-----Etv  120 (697)
T COG0480          72 ------------------WKGDYRINLIDTPGHVDFT------IEVERSL--RVLDGAVVVVDAVEGVEPQT-----ETV  120 (697)
T ss_pred             ------------------EcCceEEEEeCCCCccccH------HHHHHHH--HhhcceEEEEECCCCeeecH-----HHH
Confidence                              34 4899999999999972      2233333  23599999999999999987     456


Q ss_pred             HHHHhhccCCeEEEEecCCCCChH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~  247 (426)
                      ++.+...++|.|+++||+|+...+
T Consensus       121 ~rqa~~~~vp~i~fiNKmDR~~a~  144 (697)
T COG0480         121 WRQADKYGVPRILFVNKMDRLGAD  144 (697)
T ss_pred             HHHHhhcCCCeEEEEECccccccC
Confidence            777888999999999999998865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.22  E-value=1.7e-11  Score=111.97  Aligned_cols=128  Identities=14%  Similarity=0.197  Sum_probs=95.1

Q ss_pred             HHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc---------
Q 014354           39 EEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------  109 (426)
Q Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v---------  109 (426)
                      .++.++++...+        ....+....++.+|+|+|++||||||||++|.+.....++.+.|.+.+...         
T Consensus         6 ~~l~K~fg~~~V--------Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~   77 (240)
T COG1126           6 KNLSKSFGDKEV--------LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR   77 (240)
T ss_pred             EeeeEEeCCeEE--------ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence            345556666665        778888889999999999999999999999999999999999887744321         


Q ss_pred             ---------cccccccccc--------hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC
Q 014354          110 ---------MTLPFAANID--------IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL  166 (426)
Q Consensus       110 ---------~~~~~~t~i~--------~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~  166 (426)
                               .-+|.-|.++        .+      ..-+..++++++|+......+..  .||+|++|++++|+++..++
T Consensus        78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcCCC
Confidence                     0112111110        00      01123457889998877665553  68999999999999999999


Q ss_pred             CEEEEcCCCc
Q 014354          167 DYVLVDTPGQ  176 (426)
Q Consensus       167 ~~~liDTPGi  176 (426)
                      ++.++|.|-.
T Consensus       156 ~vmLFDEPTS  165 (240)
T COG1126         156 KVMLFDEPTS  165 (240)
T ss_pred             CEEeecCCcc
Confidence            9999999964

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.22  E-value=2.2e-09  Score=109.33  Aligned_cols=155  Identities=18%  Similarity=0.176  Sum_probs=89.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc-cccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI-LTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i-~~~~  145 (426)
                      .++.+|+++|++||||||++.+|.......+.++.++..|+.-   + ++    .+      .++.++-..  ++ +...
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R---~-aA----~e------QLk~~a~~~--~vp~~~~  161 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR---A-GA----FD------QLKQNATKA--RIPFYGS  161 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc---h-hH----HH------HHHHHhhcc--CCeEEee
Confidence            4567999999999999999999998877777889998877521   1 11    11      111111111  11 0100


Q ss_pred             ccccccHHHHH-HHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFDEVI-SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~~~~-~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      ..-.+-..-.. .+..+...+++++||||||....  ...+...+........++.+++|+|+..+.....       ..
T Consensus       162 ~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~--d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~-------~a  232 (429)
T TIGR01425       162 YTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQ--EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA-------QA  232 (429)
T ss_pred             cCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcc--hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH-------HH
Confidence            00011111000 11122235799999999997543  2233344444444456899999999987654422       12


Q ss_pred             HHHhhccCCeEEEEecCCCCCh
Q 014354          225 SILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ..+.+.--+.-+|+||+|....
T Consensus       233 ~~F~~~~~~~g~IlTKlD~~ar  254 (429)
T TIGR01425       233 KAFKDSVDVGSVIITKLDGHAK  254 (429)
T ss_pred             HHHHhccCCcEEEEECccCCCC
Confidence            2222333467899999998654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14974 cell division protein FtsY; Provisional

Probab=99.21  E-value=8.5e-10  Score=109.55  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=87.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+|+++|+||+||||++.+|.......+.++.+++.|+.-.    +      ....+......+++.-..+. ....
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~----~------a~eqL~~~a~~lgv~v~~~~-~g~d  206 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA----G------AIEQLEEHAERLGVKVIKHK-YGAD  206 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH----H------HHHHHHHHHHHcCCceeccc-CCCC
Confidence            35689999999999999999999988777777888877663210    0      00111222233332211100 0000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       ........+..+  ...+++++||||||....  ...+...+........++.+++|+|+..+.+...       ....
T Consensus       207 -p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~--~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~-------~a~~  274 (336)
T PRK14974        207 -PAAVAYDAIEHA--KARGIDVVLIDTAGRMHT--DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE-------QARE  274 (336)
T ss_pred             -HHHHHHHHHHHH--HhCCCCEEEEECCCccCC--cHHHHHHHHHHHHhhCCceEEEeeccccchhHHH-------HHHH
Confidence             001111112222  345689999999998652  1222233333334456899999999976543221       1111


Q ss_pred             HhhccCCeEEEEecCCCCCh
Q 014354          227 LYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ....--+.-+|+||+|....
T Consensus       275 f~~~~~~~giIlTKlD~~~~  294 (336)
T PRK14974        275 FNEAVGIDGVILTKVDADAK  294 (336)
T ss_pred             HHhcCCCCEEEEeeecCCCC
Confidence            22222357899999998764

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.21  E-value=8.5e-11  Score=130.35  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.|||||||.++.      ..+...+  ..+|.+|+|||+..++..++     ..+++.+...++|.|+++||+|+.
T Consensus        97 ~~~inliDtPGh~dF~------~e~~~al--~~~D~ailVvda~~Gv~~~t-----~~~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFS------SEVTAAL--RITDGALVVVDCIEGVCVQT-----ETVLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHH------HHHHHHH--hhcCEEEEEEECCCCCcccH-----HHHHHHHHHCCCCEEEEEECCccc
Confidence            4677899999998862      1121112  45799999999999998876     345566777899999999999998

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.20  E-value=2.3e-10  Score=114.22  Aligned_cols=104  Identities=17%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ..|+|+|.||||||||+|+|++...             .+.++|++|    +              .|+-|++.-.   .
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-------------~v~nypftT----i--------------~p~~G~~~v~---d   48 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-------------EAANYPFCT----I--------------EPNVGVVPVP---D   48 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-------------eeccccccc----c--------------cceEEEEEec---c
Confidence            5799999999999999999999862             266777776    1              1222322210   0


Q ss_pred             ccHHHHHHHHHH-HhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          150 TKFDEVISLIER-RADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       150 ~~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      ...+++..+... ..-..++.|+||||+....... .++......+  ..+|++++|||++.
T Consensus        49 ~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i--~~aD~li~VVd~f~  108 (364)
T PRK09601         49 PRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANI--REVDAIVHVVRCFE  108 (364)
T ss_pred             ccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHH--HhCCEEEEEEeCCc
Confidence            011111111000 0011369999999998642111 1222222222  45899999999963

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.20  E-value=1.8e-10  Score=107.52  Aligned_cols=119  Identities=16%  Similarity=0.180  Sum_probs=85.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc---------------------ccccc--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------------TLPFA--  115 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~---------------------~~~~~--  115 (426)
                      ....+....++.+|+|+|++|||||||||.|.+-..+.++.+.+.+.+....                     -+|.-  
T Consensus        21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv  100 (226)
T COG1136          21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV  100 (226)
T ss_pred             cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence            5667777889999999999999999999999999999988888877542100                     00100  


Q ss_pred             -cccch----------hhhHHHHHHHHHcCCCCCCC-cccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354          116 -ANIDI----------RDTIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI  179 (426)
Q Consensus       116 -t~i~~----------r~~~~~~~~~~~~~l~~ng~-i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~  179 (426)
                       .|+.+          .......++++.+|+..... ..  ...+|+|++|++++|+|+..++.++|-|.| |-.+.
T Consensus       101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~--p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~  175 (226)
T COG1136         101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK--PSELSGGQQQRVAIARALINNPKIILADEPTGNLDS  175 (226)
T ss_pred             HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC--chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence             01110          11223456677888875433 22  236899999999999999999999999999 66554

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.19  E-value=4.1e-11  Score=102.35  Aligned_cols=119  Identities=17%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      +...+.+||.||+..+       +.+.+.+-. .+++++|+||+...-.-..-.++....+....-.++|+++..||+|+
T Consensus        63 gnvtiklwD~gGq~rf-------rsmWerycR-~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~  134 (186)
T KOG0075|consen   63 GNVTIKLWDLGGQPRF-------RSMWERYCR-GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDL  134 (186)
T ss_pred             CceEEEEEecCCCccH-------HHHHHHHhh-cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccC
Confidence            3467789999999776       344554432 36899999999873221111111111122222468999999999998


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      ...-....+...+.                     +.  .. -..+..+.+||+...+++-+++||.++..
T Consensus       135 ~~AL~~~~li~rmg---------------------L~--sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  135 PGALSKIALIERMG---------------------LS--SITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             cccccHHHHHHHhC---------------------cc--ccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            87543222322221                     10  00 11256899999999999999999987654

>PTZ00416 elongation factor 2; Provisional

Probab=99.19  E-value=1.1e-10  Score=129.15  Aligned_cols=67  Identities=25%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.|+||||+.++.      ..+...  ...+|++|+|||+..++..++     ..+++.+...++|.|+++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~------~~~~~a--l~~~D~ailVvda~~g~~~~t-----~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFS------SEVTAA--LRVTDGALVVVDCVEGVCVQT-----ETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHH------HHHHHH--HhcCCeEEEEEECCCCcCccH-----HHHHHHHHHcCCCEEEEEEChhhh
Confidence            4678999999998752      112212  245799999999999988876     345566677789999999999998

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.19  E-value=1.5e-10  Score=111.03  Aligned_cols=155  Identities=25%  Similarity=0.294  Sum_probs=98.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+++|+.|||||||+++|++.......+        -+.....|+               .      .+.+    
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~dr--------LFATLDpT~---------------h------~a~L----  222 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDR--------LFATLDPTL---------------H------SAHL----  222 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccch--------hheeccchh---------------h------hccC----
Confidence            355799999999999999999999654321110        011111011               0      0111    


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-----cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-----~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                      ..+..+++.||-|++.-     +...+...|.+     ..+|+++.|+|.++..-.    ...-
T Consensus       223 ----------------psg~~vlltDTvGFisd-----LP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae----~q~e  277 (410)
T KOG0410|consen  223 ----------------PSGNFVLLTDTVGFISD-----LPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE----EQRE  277 (410)
T ss_pred             ----------------CCCcEEEEeechhhhhh-----CcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH----HHHH
Confidence                            23457899999998653     33456666654     348999999999875432    2223


Q ss_pred             HHHHHHhhccCC-------eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEee
Q 014354          222 YACSILYKTRLP-------LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS  294 (426)
Q Consensus       222 ~~~~~l~~~~~P-------~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vS  294 (426)
                      ..+..+.+.++|       +|=|-||+|..+..--                                .+.+.   .+++|
T Consensus       278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------------------------------~E~n~---~v~is  322 (410)
T KOG0410|consen  278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------------------------------EEKNL---DVGIS  322 (410)
T ss_pred             HHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------------------------------cccCC---ccccc
Confidence            445556677765       3447888886654310                                01111   78999


Q ss_pred             cccCCCHHHHHHHHHHHHHH
Q 014354          295 SVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       295 A~~g~gv~~l~~~l~~~~~~  314 (426)
                      |++|.|+.++.+++......
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999999999877654

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.19  E-value=1.4e-10  Score=106.99  Aligned_cols=164  Identities=15%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+++|.+|+|||+|..++++..+...+       +|.... .|..      .+                 ..    
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y-------~ptied-~y~k------~~-----------------~v----   46 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY-------DPTIED-SYRK------EL-----------------TV----   46 (196)
T ss_pred             CceEEEEECCCCCCcchheeeeccccccccc-------CCCccc-cceE------EE-----------------EE----
Confidence            3468999999999999999999998876432       222211 0000      00                 00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    ......+.|+||+|+.++.       .+.+. +....+-+++|-|+...++....-+.  ..+++.
T Consensus        47 --------------~~~~~~l~ilDt~g~~~~~-------~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~--~~I~r~  103 (196)
T KOG0395|consen   47 --------------DGEVCMLEILDTAGQEEFS-------AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLR--EQILRV  103 (196)
T ss_pred             --------------CCEEEEEEEEcCCCcccCh-------HHHHHhhccCcEEEEEEECCCHHHHHHHHHHH--HHHHHh
Confidence                          0234678899999987752       22222 22222234444444433333222111  111222


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      .....+|+|+|.||+|+.....+...  .-.                      .+... ...+++.+||+.+.+++++|.
T Consensus       104 ~~~~~~PivlVGNK~Dl~~~R~V~~e--eg~----------------------~la~~-~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen  104 KGRDDVPIILVGNKCDLERERQVSEE--EGK----------------------ALARS-WGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             hCcCCCCEEEEEEcccchhccccCHH--HHH----------------------HHHHh-cCCcEEEeeccCCcCHHHHHH
Confidence            22456899999999999875322111  111                      11111 235699999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      .|......
T Consensus       159 ~L~r~~~~  166 (196)
T KOG0395|consen  159 ELVREIRL  166 (196)
T ss_pred             HHHHHHHh
Confidence            99876554

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.18  E-value=1.3e-10  Score=107.84  Aligned_cols=103  Identities=18%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN  138 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n  138 (426)
                      ..........-.+|+++|+|.+||||||..|+.....             ...+.+||.--+                  
T Consensus        52 g~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~Se-------------aA~yeFTTLtcI------------------  100 (364)
T KOG1486|consen   52 GEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSE-------------AASYEFTTLTCI------------------  100 (364)
T ss_pred             CCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhh-------------hhceeeeEEEee------------------
Confidence            3344444555678999999999999999999987532             333444441000                  


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCc
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANP  213 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~  213 (426)
                      .|++.                   ..+..++++|.|||++..+.+ ..++++....  .-+|+++.|+|++.+...
T Consensus       101 pGvi~-------------------y~ga~IQllDLPGIieGAsqgkGRGRQviavA--rtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  101 PGVIH-------------------YNGANIQLLDLPGIIEGASQGKGRGRQVIAVA--RTADLILMVLDATKSEDQ  155 (364)
T ss_pred             cceEE-------------------ecCceEEEecCcccccccccCCCCCceEEEEe--ecccEEEEEecCCcchhH
Confidence            12221                   256789999999999864322 2344333222  237999999999876543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.18  E-value=1e-10  Score=111.17  Aligned_cols=146  Identities=16%  Similarity=0.113  Sum_probs=98.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccc------c-----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAA------N-----  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t------~-----  117 (426)
                      ..+.+...+++.+++|+|++||||||||+.|.+...+..+.+.+.+.+.          .+..+|+..      +     
T Consensus        18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V   97 (258)
T COG1120          18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELV   97 (258)
T ss_pred             EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehH
Confidence            5667777888999999999999999999999999888888887777541          111222221      1     


Q ss_pred             ----------cc---hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC-cccccchh
Q 014354          118 ----------ID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG-QIEIFTWS  183 (426)
Q Consensus       118 ----------i~---~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG-i~e~~~~~  183 (426)
                                +.   -.|...+.+.++.+++.....-.  ...+|+|.+|++.+|+++..+++++++|.|= ..++. +.
T Consensus        98 ~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~-~Q  174 (258)
T COG1120          98 LLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA-HQ  174 (258)
T ss_pred             hhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH-HH
Confidence                      10   11233456678888887764432  3468999999999999999999999999994 33431 11


Q ss_pred             chHHHHHHHHH-hcCCcEEEEEEeC
Q 014354          184 ASGAIITEAFA-STFPTVVTYVVDT  207 (426)
Q Consensus       184 ~~~~~l~~~~~-~~~~d~vl~VVDa  207 (426)
                      ..-..+...+. .....+|+.+.|.
T Consensus       175 ~evl~ll~~l~~~~~~tvv~vlHDl  199 (258)
T COG1120         175 IEVLELLRDLNREKGLTVVMVLHDL  199 (258)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCH
Confidence            11122233333 2335566666665

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.18  E-value=2.7e-10  Score=99.08  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++.++||.+-+|||+||..++...++.-.       ||.|       .+|.                             
T Consensus         9 frlivigdstvgkssll~~ft~gkfaels-------dptv-------gvdf-----------------------------   45 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTV-------GVDF-----------------------------   45 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcccccC-------CCcc-------chHH-----------------------------
Confidence            57899999999999999999988766421       2332       1111                             


Q ss_pred             ccHHHHHHHHHH-HhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCC--CCCCchhhhhhHHHHHH
Q 014354          150 TKFDEVISLIER-RADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACS  225 (426)
Q Consensus       150 ~~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~--~~~~~~~~~~~~l~~~~  225 (426)
                           ...+++- .+....+++|||+|+.++       +.+++ +++..  --+++|.|.+  .++.+...|   +....
T Consensus        46 -----farlie~~pg~riklqlwdtagqerf-------rsitksyyrns--vgvllvyditnr~sfehv~~w---~~ea~  108 (213)
T KOG0091|consen   46 -----FARLIELRPGYRIKLQLWDTAGQERF-------RSITKSYYRNS--VGVLLVYDITNRESFEHVENW---VKEAA  108 (213)
T ss_pred             -----HHHHHhcCCCcEEEEEEeeccchHHH-------HHHHHHHhhcc--cceEEEEeccchhhHHHHHHH---HHHHH
Confidence                 1111110 123468899999999887       33333 34433  3445555554  444443322   11122


Q ss_pred             HHhh-ccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYK-TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~-~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ...+ ..++ +.||..|+|+.+.+.+.  .+.-+.|.                       .+....+|.+||++|.||++
T Consensus       109 m~~q~P~k~VFlLVGhKsDL~SqRqVt--~EEaEklA-----------------------a~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen  109 MATQGPDKVVFLLVGHKSDLQSQRQVT--AEEAEKLA-----------------------ASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             HhcCCCCeeEEEEeccccchhhhcccc--HHHHHHHH-----------------------HhcCceEEEecccCCCcHHH
Confidence            2222 2333 45799999999876432  11111111                       13456799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      -+.-|...+..
T Consensus       164 AF~mlaqeIf~  174 (213)
T KOG0091|consen  164 AFDMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHHHH
Confidence            88777655443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.9e-10  Score=111.14  Aligned_cols=104  Identities=19%  Similarity=0.312  Sum_probs=67.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...++|+|.||+|||||+|+|+.....             ..++|++|                  +.||-|+..-    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~-------------~aNYPF~T------------------IePN~Giv~v----   46 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAE-------------IANYPFCT------------------IEPNVGVVYV----   46 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCcc-------------ccCCCccc------------------ccCCeeEEec----
Confidence            357999999999999999999998732             67889887                  4455554431    


Q ss_pred             cc-cHHHHHHHHH--HHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          149 TT-KFDEVISLIE--RRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       149 s~-~~~~~~~~~~--~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      .+ -+.++..+..  .......+.|+|.+|+..... -..+|..+..-++  .+|+++.|||++.
T Consensus        47 ~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IR--evdaI~hVVr~f~  109 (372)
T COG0012          47 PDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIR--EVDAIIHVVRCFG  109 (372)
T ss_pred             CchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhh--hcCeEEEEEEecC
Confidence            11 1111111111  001124678999999988643 2335665555553  4699999999973

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=7.7e-11  Score=103.52  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=76.9

Q ss_pred             CCEEEEcCCCcccccchhchHHHHH-HHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~-~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ..+.|||.-|+...       +.+. .++  ..++.++||||+.+...-..-.+........-...+.|+++.+||-|+.
T Consensus        69 ~~l~fwdlgGQe~l-------rSlw~~yY--~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q  139 (197)
T KOG0076|consen   69 APLSFWDLGGQESL-------RSLWKKYY--WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ  139 (197)
T ss_pred             ceeEEEEcCChHHH-------HHHHHHHH--HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence            57899999999553       2222 222  3468999999997632221111111111122235689999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      ......++...+.. ...                  +  -....++.||||++|+||.+=..|+...++..
T Consensus       140 ~~~~~~El~~~~~~-~e~------------------~--~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  140 NAMEAAELDGVFGL-AEL------------------I--PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhHHHHHHHhhh-hhh------------------c--CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            87655444433331 000                  0  01235799999999999999999999988875

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.15  E-value=2.5e-10  Score=102.94  Aligned_cols=160  Identities=18%  Similarity=0.152  Sum_probs=108.8

Q ss_pred             hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------
Q 014354           38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------  107 (426)
Q Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------  107 (426)
                      .+.++++++...+        ..+.+...+++.+++++||+||||||||..+.+......+.++|.+.+-          
T Consensus         4 i~nv~K~y~~~~v--------l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk   75 (252)
T COG4604           4 IENVSKSYGTKVV--------LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK   75 (252)
T ss_pred             ehhhhHhhCCEEe--------eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHH
Confidence            3567777777766        6777888889999999999999999999999999888888888887762          


Q ss_pred             ---------------------ccccccccc-ccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC
Q 014354          108 ---------------------AVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH  165 (426)
Q Consensus       108 ---------------------~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~  165 (426)
                                           ++..+||.. .....++..+.+.++.++|..-..-  .+..||+|++|++-+|..+..+
T Consensus        76 ~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr--yLd~LSGGQrQRAfIAMVlaQd  153 (252)
T COG4604          76 KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR--YLDELSGGQRQRAFIAMVLAQD  153 (252)
T ss_pred             HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH--hHHhcccchhhhhhhheeeecc
Confidence                                 123344432 1112344455677777776654332  2346899999999999999999


Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcC-CcEEEEEEeC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTF-PTVVTYVVDT  207 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~-~d~vl~VVDa  207 (426)
                      .+|+++|.|=----..|...-..+.+.++..+ ..+++++.|.
T Consensus       154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI  196 (252)
T COG4604         154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI  196 (252)
T ss_pred             CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence            99999999942111112222223333333333 4566666665

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.13  E-value=3.3e-10  Score=105.04  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccC
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSR   96 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~   96 (426)
                      +|+++|.+|+|||||++++++..+..
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~   27 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLG   27 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            68999999999999999999876543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.13  E-value=1.9e-09  Score=107.76  Aligned_cols=122  Identities=19%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             CCEEEEcCCCcccccchhchHH---------------------HH-HHHHHhcCCcEEEEEE-eCCCC-CCchhhhhhHH
Q 014354          166 LDYVLVDTPGQIEIFTWSASGA---------------------II-TEAFASTFPTVVTYVV-DTPRS-ANPMTFMSNML  221 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~---------------------~l-~~~~~~~~~d~vl~VV-Da~~~-~~~~~~~~~~l  221 (426)
                      ..+.||||+|+......+.+..                     .+ ++..-..++|+.|+|. |.+-+ +....+.....
T Consensus        91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe  170 (492)
T TIGR02836        91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE  170 (492)
T ss_pred             ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence            6889999999877522111100                     00 1111123678989888 77411 11122333334


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      .....+++.++|+|+|+||+|-..++.. .+...+.                         +.|. ++++++||.. -.-
T Consensus       171 ~~i~eLk~~~kPfiivlN~~dp~~~et~-~l~~~l~-------------------------eky~-vpvl~v~c~~-l~~  222 (492)
T TIGR02836       171 RVIEELKELNKPFIILLNSTHPYHPETE-ALRQELE-------------------------EKYD-VPVLAMDVES-MRE  222 (492)
T ss_pred             HHHHHHHhcCCCEEEEEECcCCCCchhH-HHHHHHH-------------------------HHhC-CceEEEEHHH-cCH
Confidence            5667788999999999999995544321 1222221                         2344 7889999864 345


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQEF  315 (426)
Q Consensus       302 ~~l~~~l~~~~~~~  315 (426)
                      .++...+.+.+.++
T Consensus       223 ~DI~~il~~vL~EF  236 (492)
T TIGR02836       223 SDILSVLEEVLYEF  236 (492)
T ss_pred             HHHHHHHHHHHhcC
Confidence            56666666666553

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.13  E-value=3.9e-09  Score=102.30  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+++++|++|+||||++..|.......+.++.++..|+.-.          ........+.+..++.    ++.. 
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~----------~a~~ql~~~~~~~~i~----~~~~-  133 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA----------AAIEQLEEWAKRLGVD----VIKQ-  133 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH----------HHHHHHHHHHHhCCeE----EEeC-
Confidence            345679999999999999999999988877788999998885210          1111222233333321    1110 


Q ss_pred             ccccccHHHHHH-HHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchhhhh
Q 014354          146 NLFTTKFDEVIS-LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       146 ~~ls~~~~~~~~-~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      ..-.+...-... +......+++++||||||....  .......+......      ..++-+++|+|+..+.+...   
T Consensus       134 ~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~---  208 (272)
T TIGR00064       134 KEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE---  208 (272)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH---
Confidence            000010011101 1122356799999999998653  11112222222222      23789999999974432211   


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                         .+..+.... -+.-+|+||+|....
T Consensus       209 ---~~~~f~~~~-~~~g~IlTKlDe~~~  232 (272)
T TIGR00064       209 ---QAKVFNEAV-GLTGIILTKLDGTAK  232 (272)
T ss_pred             ---HHHHHHhhC-CCCEEEEEccCCCCC
Confidence               111111122 357899999998764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=5.9e-10  Score=111.39  Aligned_cols=159  Identities=20%  Similarity=0.190  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+..|+--.|||||+.++++......               |..               ++.|+...-|+.+      .
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l---------------~Ee---------------kKRG~TiDlg~~y------~   45 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRL---------------PEE---------------KKRGITIDLGFYY------R   45 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccc---------------hhh---------------hhcCceEeeeeEe------c
Confidence            588999999999999999999764321               100               0111111112111      1


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                 ...+..+.|||.||+.++         +..++.. ...|++++||++..++..++     ...+..+..
T Consensus        46 -----------~~~d~~~~fIDvpgh~~~---------i~~miag~~~~d~alLvV~~deGl~~qt-----gEhL~iLdl  100 (447)
T COG3276          46 -----------KLEDGVMGFIDVPGHPDF---------ISNLLAGLGGIDYALLVVAADEGLMAQT-----GEHLLILDL  100 (447)
T ss_pred             -----------cCCCCceEEeeCCCcHHH---------HHHHHhhhcCCceEEEEEeCccCcchhh-----HHHHHHHHh
Confidence                       124457889999999764         3333332 34799999999999998877     344455666


Q ss_pred             ccCCe-EEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       230 ~~~P~-IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      .+++. ++|+||+|++..+.+....+.+..   .              +     . +...++|.+|+.+|.||++|.+.|
T Consensus       101 lgi~~giivltk~D~~d~~r~e~~i~~Il~---~--------------l-----~-l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276         101 LGIKNGIIVLTKADRVDEARIEQKIKQILA---D--------------L-----S-LANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             cCCCceEEEEeccccccHHHHHHHHHHHHh---h--------------c-----c-cccccccccccccCCCHHHHHHHH
Confidence            77777 899999999998754444433321   1              1     1 456789999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .....
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            88773

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.13  E-value=4.3e-10  Score=99.12  Aligned_cols=144  Identities=22%  Similarity=0.294  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC----CCCCCcccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILTSLN  146 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l----~~ng~i~~~~~  146 (426)
                      +++++|++|+|||||+..+.......+.++.++..|+..... ... + ..+.+...+.....++    .+.++.+.   
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   74 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-GGA-I-LGDRIRMERHASDPGVFIRSLATRGFLG---   74 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-ccc-h-hcCceEhhheecCCCceEEEcCCcCccc---
Confidence            378999999999999999999988889999999998743211 000 0 0111111111000010    11111111   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      .+.....+.+..++  ..+++++||||||+...         ....+  ..+|.+++|+.....-.         +.+..
T Consensus        75 ~~~~~~~~~~~~~~--~~~~D~iiIDtaG~~~~---------~~~~~--~~Ad~~ivv~tpe~~D~---------y~~~k  132 (148)
T cd03114          75 GLSRATPEVIRVLD--AAGFDVIIVETVGVGQS---------EVDIA--SMADTTVVVMAPGAGDD---------IQAIK  132 (148)
T ss_pred             ccchhHHHHHHHHH--hcCCCEEEEECCccChh---------hhhHH--HhCCEEEEEECCCchhH---------HHHhh
Confidence            12233444444444  34799999999997542         11122  34688888887652211         11222


Q ss_pred             HhhccCCeEEEEecCC
Q 014354          227 LYKTRLPLVLAFNKTD  242 (426)
Q Consensus       227 l~~~~~P~IlVlNKiD  242 (426)
                      ..-.....++|+||+|
T Consensus       133 ~~~~~~~~~~~~~k~~  148 (148)
T cd03114         133 AGIMEIADIVVVNKAD  148 (148)
T ss_pred             hhHhhhcCEEEEeCCC
Confidence            2233556799999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.12  E-value=8.9e-11  Score=98.66  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=39.1

Q ss_pred             CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCC
Q 014354          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD  242 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiD  242 (426)
                      .+.|||++|...+..  .... .     ...+|++++|+|.++..+- ......+..+..+.  ..++|+|||.||.|
T Consensus        51 ~~~~~d~~g~~~~~~--~~~~-~-----~~~~d~~ilv~D~s~~~s~-~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   51 SLQFWDFGGQEEFYS--QHQF-F-----LKKADAVILVYDLSDPESL-EYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEESSSHCHHC--TSHH-H-----HHHSCEEEEEEECCGHHHH-HHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEEecCccceecc--cccc-h-----hhcCcEEEEEEcCCChHHH-HHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            478999999976521  1111 1     1336999999998753211 22222222333333  24699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1e-09  Score=109.21  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ....+||-+|.||||||..+|+-.-..+...+.|-+-.              ..+....+||+.-.   ..||..+    
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--------------~~~~a~SDWM~iEk---qRGISVt----   70 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--------------SGKHAKSDWMEIEK---QRGISVT----   70 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--------------CCcccccHHHHHHH---hcCceEE----
Confidence            35679999999999999999986544433222221111              11112234443211   1233332    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      +.-|+.       -..++.+.|+|||||.+++      ...-+.+  +.+|.+|.|||+..|+.+++..     ....++
T Consensus        71 sSVMqF-------~Y~~~~iNLLDTPGHeDFS------EDTYRtL--tAvDsAvMVIDaAKGiE~qT~K-----LfeVcr  130 (528)
T COG4108          71 SSVMQF-------DYADCLVNLLDTPGHEDFS------EDTYRTL--TAVDSAVMVIDAAKGIEPQTLK-----LFEVCR  130 (528)
T ss_pred             eeEEEe-------ccCCeEEeccCCCCccccc------hhHHHHH--HhhheeeEEEecccCccHHHHH-----HHHHHh
Confidence            111111       1356788999999999973      1112222  2359999999999999998843     334456


Q ss_pred             hccCCeEEEEecCCCCChH
Q 014354          229 KTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~  247 (426)
                      ..++|++-.+||+|+....
T Consensus       131 lR~iPI~TFiNKlDR~~rd  149 (528)
T COG4108         131 LRDIPIFTFINKLDREGRD  149 (528)
T ss_pred             hcCCceEEEeeccccccCC
Confidence            6799999999999998754

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.11  E-value=6e-10  Score=106.53  Aligned_cols=126  Identities=15%  Similarity=0.192  Sum_probs=70.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+|+|++.....            ++..+.++    +...              .+ .++   
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~------------v~~~~~~T----~~~~--------------~~-~~~---   75 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAA------------TSAFQSET----LRVR--------------EV-SGT---   75 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EE-EEE---
Confidence            56789999999999999999999986432            22221111    0000              00 000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLY  222 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~  222 (426)
                                     ..+..+.||||||+.+..........    +.+.+.....++++||...... ....+     ..
T Consensus        76 ---------------~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-----~~  135 (249)
T cd01853          76 ---------------VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-----LP  135 (249)
T ss_pred             ---------------ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-----HH
Confidence                           24568999999999875211111111    2223333457888888654322 22221     11


Q ss_pred             HHHHHh-----hccCCeEEEEecCCCCChH
Q 014354          223 ACSILY-----KTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       223 ~~~~l~-----~~~~P~IlVlNKiDl~~~~  247 (426)
                      .+..+.     ..-.++++|+||+|...+.
T Consensus       136 llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         136 LLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            111121     2235799999999998764

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.10  E-value=3.8e-11  Score=100.85  Aligned_cols=120  Identities=19%  Similarity=0.236  Sum_probs=74.9

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC--Cc-hhhhhhHHHHHHHHhhccCCeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NP-MTFMSNMLYACSILYKTRLPLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~-~~~~~~~l~~~~~l~~~~~P~IlVlNK  240 (426)
                      ..+.+++|||+|+.++.      +....++  ..+|.++++.|..+..  ++ +.|++.+    ....+..+.+.++.||
T Consensus        45 ~kvklqiwdtagqerfr------svt~ayy--rda~allllydiankasfdn~~~wlsei----~ey~k~~v~l~llgnk  112 (192)
T KOG0083|consen   45 KKVKLQIWDTAGQERFR------SVTHAYY--RDADALLLLYDIANKASFDNCQAWLSEI----HEYAKEAVALMLLGNK  112 (192)
T ss_pred             cEEEEEEeeccchHHHh------hhhHhhh--cccceeeeeeecccchhHHHHHHHHHHH----HHHHHhhHhHhhhccc
Confidence            45789999999998872      1122233  2356677777765443  33 3333332    2233556778999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhhh
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK  320 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~~  320 (426)
                      +|+.....+..-  +                      +.-+.+-| ..|+..+||++|-+|+--|-.|.+.+....-.+|
T Consensus       113 ~d~a~er~v~~d--d----------------------g~kla~~y-~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~~  167 (192)
T KOG0083|consen  113 CDLAHERAVKRD--D----------------------GEKLAEAY-GIPFMETSAKTGFNVDLAFLAIAEELKKLKMGAP  167 (192)
T ss_pred             cccchhhccccc--h----------------------HHHHHHHH-CCCceeccccccccHhHHHHHHHHHHHHhccCCC
Confidence            999765422100  0                      11122234 3789999999999999999888887766544333

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.09  E-value=1.6e-09  Score=90.43  Aligned_cols=143  Identities=19%  Similarity=0.150  Sum_probs=89.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+++++|..|+|||||+++|.|......              ..+                         ++-.      
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--------------KTQ-------------------------Ave~------   36 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--------------KTQ-------------------------AVEF------   36 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhc--------------ccc-------------------------eeec------
Confidence            3689999999999999999999863211              000                         0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                      .+--.|||||-.  +.+...-..+.-  ....+|++++|..+.+..+...  .      .++.-
T Consensus        37 ----------------~d~~~IDTPGEy--~~~~~~Y~aL~t--t~~dadvi~~v~~and~~s~f~--p------~f~~~   88 (148)
T COG4917          37 ----------------NDKGDIDTPGEY--FEHPRWYHALIT--TLQDADVIIYVHAANDPESRFP--P------GFLDI   88 (148)
T ss_pred             ----------------cCccccCCchhh--hhhhHHHHHHHH--HhhccceeeeeecccCccccCC--c------ccccc
Confidence                            122369999952  222222222221  2356799999998876654311  1      11222


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|+|-|++|+|+...+.+......+.                         + .+.-++|.+|+..+.|+++|+++|.
T Consensus        89 ~~k~vIgvVTK~DLaed~dI~~~~~~L~-------------------------e-aGa~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          89 GVKKVIGVVTKADLAEDADISLVKRWLR-------------------------E-AGAEPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cccceEEEEecccccchHhHHHHHHHHH-------------------------H-cCCcceEEEeccCcccHHHHHHHHH
Confidence            3567899999999997654332221111                         1 1245799999999999999999886


Q ss_pred             HH
Q 014354          310 ES  311 (426)
Q Consensus       310 ~~  311 (426)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            53

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=5.7e-10  Score=101.43  Aligned_cols=183  Identities=20%  Similarity=0.306  Sum_probs=105.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|.++|+.+||||+|+-.|.......           ++..                       +.||-+....    
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~-----------TvtS-----------------------iepn~a~~r~----   79 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRG-----------TVTS-----------------------IEPNEATYRL----   79 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccC-----------eeee-----------------------eccceeeEee----
Confidence            3569999999999999999888764221           1111                       2233333321    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHH-HHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI  226 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~  226 (426)
                                     +.-...+||-||+.+.      ...+.+.+.. ..+-.+|||||+........-....++- +..
T Consensus        80 ---------------gs~~~~LVD~PGH~rl------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~  138 (238)
T KOG0090|consen   80 ---------------GSENVTLVDLPGHSRL------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLD  138 (238)
T ss_pred             ---------------cCcceEEEeCCCcHHH------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHh
Confidence                           2234789999999664      2455555543 3467899999998766553322222221 111


Q ss_pred             H--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccch-----hhhHHHH--hhhhHhhh-----h-cCCceE
Q 014354          227 L--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSY-----TSTLTNS--LSLALDEF-----Y-KNLKSV  291 (426)
Q Consensus       227 l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~--~~~~l~~~-----~-~~~~vv  291 (426)
                      .  .....|++|+.||.|+...+....+.+.++.-.+.++..++.     ..+..+.  ++.--..|     . ..+.+.
T Consensus       139 ~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~  218 (238)
T KOG0090|consen  139 SRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFA  218 (238)
T ss_pred             hccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEe
Confidence            1  245678899999999987655544555544333322211110     0000000  00000011     1 235788


Q ss_pred             EeecccCCCHHHHHHHHHHH
Q 014354          292 GVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       292 ~vSA~~g~gv~~l~~~l~~~  311 (426)
                      +.|+++| ++.++.+||.+.
T Consensus       219 e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  219 EASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ecccCcC-ChHHHHHHHHHh
Confidence            8999988 899999988764

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=4.8e-10  Score=97.02  Aligned_cols=166  Identities=23%  Similarity=0.304  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc-CCCCCCCccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF-NLGPNGGILTSLNLFT  149 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~-~l~~ng~i~~~~~~ls  149 (426)
                      +.+.+|.+|+||||||-+.+...+.. ..+..++.|             .|....      .+ ..+|+++ -       
T Consensus        11 kfLaLGDSGVGKTs~Ly~YTD~~F~~-qFIsTVGID-------------FreKrv------vY~s~gp~g~-g-------   62 (219)
T KOG0081|consen   11 KFLALGDSGVGKTSFLYQYTDGKFNT-QFISTVGID-------------FREKRV------VYNSSGPGGG-G-------   62 (219)
T ss_pred             HHHhhccCCCCceEEEEEecCCcccc-eeEEEeecc-------------cccceE------EEeccCCCCC-C-------
Confidence            45678999999999999888776543 233333333             221110      00 0112211 0       


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-  227 (426)
                                  +.....+++|||+|++++       +.+..+ ++.+  --.+++.|.+.   .+.|+.. ..+++.+ 
T Consensus        63 ------------r~~rihLQlWDTAGQERF-------RSLTTAFfRDA--MGFlLiFDlT~---eqSFLnv-rnWlSQL~  117 (219)
T KOG0081|consen   63 ------------RGQRIHLQLWDTAGQERF-------RSLTTAFFRDA--MGFLLIFDLTS---EQSFLNV-RNWLSQLQ  117 (219)
T ss_pred             ------------cceEEEEeeeccccHHHH-------HHHHHHHHHhh--ccceEEEeccc---hHHHHHH-HHHHHHHH
Confidence                        123467899999999887       233322 2222  23455566543   2233221 2222222 


Q ss_pred             --hhccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 --YKTRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 --~~~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                        .-.+-| +||+.||+|+.....+.+-.                        +..+...| ..|+|.+||-+|++|..-
T Consensus       118 ~hAYcE~PDivlcGNK~DL~~~R~Vs~~q------------------------a~~La~ky-glPYfETSA~tg~Nv~ka  172 (219)
T KOG0081|consen  118 THAYCENPDIVLCGNKADLEDQRVVSEDQ------------------------AAALADKY-GLPYFETSACTGTNVEKA  172 (219)
T ss_pred             HhhccCCCCEEEEcCccchhhhhhhhHHH------------------------HHHHHHHh-CCCeeeeccccCcCHHHH
Confidence              234556 45689999998766432111                        11122334 389999999999999988


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      .+.|...+-+
T Consensus       173 ve~LldlvM~  182 (219)
T KOG0081|consen  173 VELLLDLVMK  182 (219)
T ss_pred             HHHHHHHHHH
Confidence            7777665444

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=6.5e-10  Score=114.03  Aligned_cols=179  Identities=20%  Similarity=0.290  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-------
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-------  138 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-------  138 (426)
                      .+.....+++|+.++|||||+.+|+...-...                      -|....++.-.+..|-..+       
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~----------------------~~~m~kl~~es~~~Gk~Sf~yawiLD  231 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEIS----------------------SRSMHKLERESKNLGKSSFAYAWILD  231 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCcc----------------------HHHHHHHHHHHHhcCCcceeeeEEec
Confidence            33557899999999999999999998763321                      1222223222222222111       


Q ss_pred             -------CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCC
Q 014354          139 -------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRS  210 (426)
Q Consensus       139 -------g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~  210 (426)
                             .|+.-..-  ...+         -.....+.|+|+|||-+|-         ..++. ...+|++++|||++.+
T Consensus       232 eT~eERerGvTm~v~--~~~f---------es~~~~~tliDaPGhkdFi---------~nmi~g~sqaD~avLvvd~s~~  291 (603)
T KOG0458|consen  232 ETKEERERGVTMDVK--TTWF---------ESKSKIVTLIDAPGHKDFI---------PNMISGASQADVAVLVVDASTG  291 (603)
T ss_pred             cchhhhhcceeEEee--eEEE---------ecCceeEEEecCCCccccc---------hhhhccccccceEEEEEECCcc
Confidence                   12111000  0000         0234678999999987752         22222 2458999999999865


Q ss_pred             CCchhhhh--hHHHHHHHHhhccCC-eEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh
Q 014354          211 ANPMTFMS--NMLYACSILYKTRLP-LVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY  285 (426)
Q Consensus       211 ~~~~~~~~--~~l~~~~~l~~~~~P-~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  285 (426)
                      .-...|..  ....++.+++..++- .|+++||+|++.-  ++..++...+..|+..             ..     .|.
T Consensus       292 ~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~-------------~~-----gf~  353 (603)
T KOG0458|consen  292 EFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKE-------------SC-----GFK  353 (603)
T ss_pred             hhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHH-------------hc-----Ccc
Confidence            43221110  113344445555554 5778999999973  3334444444433311             00     122


Q ss_pred             -cCCceEEeecccCCCHHHH
Q 014354          286 -KNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       286 -~~~~vv~vSA~~g~gv~~l  304 (426)
                       ..+.+||+|+++|+|+-..
T Consensus       354 es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  354 ESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cCCcceEecccccCCccccc
Confidence             2358999999999997643

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=7e-10  Score=94.11  Aligned_cols=164  Identities=19%  Similarity=0.260  Sum_probs=94.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..++.+|+|.-|+|||.||..++...+..        ..|...-+.+++.                       |.     
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfma--------dcphtigvefgtr-----------------------ii-----   53 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------DCPHTIGVEFGTR-----------------------II-----   53 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhh--------cCCcccceeccee-----------------------EE-----
Confidence            45788999999999999999999887532        1121111122220                       00     


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH-HHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~-~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                  +..+....++||||+|+.++       +.+.+. ++.+  .-++.|.|.++.... ..++..+.-.+.
T Consensus        54 ------------evsgqkiklqiwdtagqerf-------ravtrsyyrga--agalmvyditrrsty-nhlsswl~dar~  111 (215)
T KOG0097|consen   54 ------------EVSGQKIKLQIWDTAGQERF-------RAVTRSYYRGA--AGALMVYDITRRSTY-NHLSSWLTDARN  111 (215)
T ss_pred             ------------EecCcEEEEEEeecccHHHH-------HHHHHHHhccc--cceeEEEEehhhhhh-hhHHHHHhhhhc
Confidence                        00135578999999999886       233333 3322  344555565543322 112222333333


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +...+..++++.||.|+...+.+.  .+..+.|..                       -+...++..||++|.+|++.|-
T Consensus       112 ltnpnt~i~lignkadle~qrdv~--yeeak~fae-----------------------engl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen  112 LTNPNTVIFLIGNKADLESQRDVT--YEEAKEFAE-----------------------ENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             cCCCceEEEEecchhhhhhcccCc--HHHHHHHHh-----------------------hcCeEEEEecccccCcHHHHHH
Confidence            445566678899999998765431  111121111                       1335688999999999998765


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      ...+.+..
T Consensus       167 e~akkiyq  174 (215)
T KOG0097|consen  167 ETAKKIYQ  174 (215)
T ss_pred             HHHHHHHH
Confidence            54444433

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.07  E-value=9.7e-10  Score=102.11  Aligned_cols=130  Identities=17%  Similarity=0.191  Sum_probs=95.8

Q ss_pred             hhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-c------
Q 014354           37 EKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-V------  109 (426)
Q Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-v------  109 (426)
                      +...+..+++...+        ..+.+....++.+++|+|++|+||||||+.|+|...+..+.+.+.+.+.. .      
T Consensus        10 ~vr~v~~~fG~~~I--------ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~   81 (263)
T COG1127          10 EVRGVTKSFGDRVI--------LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY   81 (263)
T ss_pred             EEeeeeeecCCEEE--------ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH
Confidence            34566666666666        77788889999999999999999999999999999999999999888721 1      


Q ss_pred             ----------------cccccccccc--hhhhH---------HHHHHHHHcCCCCC-CCcccccccccccHHHHHHHHHH
Q 014354          110 ----------------MTLPFAANID--IRDTI---------RYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIER  161 (426)
Q Consensus       110 ----------------~~~~~~t~i~--~r~~~---------~~~~~~~~~~l~~n-g~i~~~~~~ls~~~~~~~~~~~~  161 (426)
                                      +.+....|+.  +|...         .+...++.+||.+. +..+.+  .+|+||++++++|+|
T Consensus        82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps--ELSGGM~KRvaLARA  159 (263)
T COG1127          82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS--ELSGGMRKRVALARA  159 (263)
T ss_pred             HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch--hhcchHHHHHHHHHH
Confidence                            1111111111  11111         12335778888877 334443  689999999999999


Q ss_pred             HhcCCCEEEEcCC--Cc
Q 014354          162 RADHLDYVLVDTP--GQ  176 (426)
Q Consensus       162 ~~~~~~~~liDTP--Gi  176 (426)
                      +.-+++++|+|.|  |+
T Consensus       160 ialdPell~~DEPtsGL  176 (263)
T COG1127         160 IALDPELLFLDEPTSGL  176 (263)
T ss_pred             HhcCCCEEEecCCCCCC
Confidence            9999999999999  55

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.07  E-value=6.3e-10  Score=121.67  Aligned_cols=71  Identities=24%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCC
Q 014354          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (426)
Q Consensus       163 ~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiD  242 (426)
                      +.++++.||||||+.++.      ..+...+  ..+|++|+|+|+..+...++     ..++..+...++|.|+|+||+|
T Consensus        83 ~~~~~i~liDTPG~~~f~------~~~~~al--~~aD~~llVvda~~g~~~~t-----~~~~~~~~~~~~p~ivviNKiD  149 (720)
T TIGR00490        83 GNEYLINLIDTPGHVDFG------GDVTRAM--RAVDGAIVVVCAVEGVMPQT-----ETVLRQALKENVKPVLFINKVD  149 (720)
T ss_pred             CCceEEEEEeCCCccccH------HHHHHHH--HhcCEEEEEEecCCCCCccH-----HHHHHHHHHcCCCEEEEEEChh
Confidence            356889999999998752      2222222  34799999999998876654     2334445566889999999999


Q ss_pred             CCCh
Q 014354          243 VAQH  246 (426)
Q Consensus       243 l~~~  246 (426)
                      +...
T Consensus       150 ~~~~  153 (720)
T TIGR00490       150 RLIN  153 (720)
T ss_pred             cccc
Confidence            9753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.07  E-value=2.5e-10  Score=104.02  Aligned_cols=174  Identities=17%  Similarity=0.202  Sum_probs=104.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+++|+|..++|||.||-..+...++..+.+.|.++-. +     ...++                             
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys-~-----~v~V~-----------------------------   48 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYS-A-----NVTVD-----------------------------   48 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccce-E-----EEEec-----------------------------
Confidence            468999999999999999999998888776655542111 1     00000                             


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeC--CCCCCc--hhhhhhHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANP--MTFMSNMLYAC  224 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa--~~~~~~--~~~~~~~l~~~  224 (426)
                                   -++...+-+|||+|+.++...+.        +.-..+|+++++.+.  ...+..  ..|...+... 
T Consensus        49 -------------dg~~v~L~LwDTAGqedYDrlRp--------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~-  106 (198)
T KOG0393|consen   49 -------------DGKPVELGLWDTAGQEDYDRLRP--------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH-  106 (198)
T ss_pred             -------------CCCEEEEeeeecCCCcccccccc--------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh-
Confidence                         01235678999999999843222        211335666554443  333322  2232222211 


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                          -.+.|+|||.+|.|+.....   ..   ..+...      ....++...+..+....+...++++||++..|+.++
T Consensus       107 ----cp~vpiiLVGtk~DLr~d~~---~~---~~l~~~------~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~v  170 (198)
T KOG0393|consen  107 ----CPNVPIILVGTKADLRDDPS---TL---EKLQRQ------GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEV  170 (198)
T ss_pred             ----CCCCCEEEEeehHHhhhCHH---HH---HHHHhc------cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHH
Confidence                24799999999999984331   11   111111      112233333444444445577999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          305 FKAVEESAQEF  315 (426)
Q Consensus       305 ~~~l~~~~~~~  315 (426)
                      |+.........
T Consensus       171 F~~a~~~~l~~  181 (198)
T KOG0393|consen  171 FDEAIRAALRP  181 (198)
T ss_pred             HHHHHHHHhcc
Confidence            98887776554

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.06  E-value=6.8e-10  Score=108.80  Aligned_cols=114  Identities=16%  Similarity=0.221  Sum_probs=89.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----------c
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----------D  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----------~  119 (426)
                      ..+.+...+++.+++|+|++||||||||+.|+|...+.++.+.+.+.++.         +..+|....+          .
T Consensus        21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~  100 (293)
T COG1131          21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE  100 (293)
T ss_pred             EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence            67778888899999999999999999999999999999999988886542         2223332221          1


Q ss_pred             ----hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 ----IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ----~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                          ++      ...+++++++.+++.....  ...+.||+|+++++.++.++..+++++|+|.|
T Consensus       101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP  163 (293)
T COG1131         101 FFARLYGLSKEEAEERIEELLELFGLEDKAN--KKVRTLSGGMKQRLSIALALLHDPELLILDEP  163 (293)
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHcCCchhhC--cchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence                11      1235678999999987332  22345899999999999999999999999999

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.06  E-value=6.2e-10  Score=108.90  Aligned_cols=217  Identities=15%  Similarity=0.139  Sum_probs=124.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHH------HHHHcCCCCCCC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE------VMKQFNLGPNGG  140 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~------~~~~~~l~~ng~  140 (426)
                      +....|+..|+.++|||||+..|+......+.-..-.-    .         + +..+.++.      .+..+|+.. +.
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~----l---------d-v~kHEverGlsa~iS~~v~Gf~d-gk  179 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY----L---------D-VQKHEVERGLSADISLRVYGFDD-GK  179 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhh----h---------h-hhhHHHhhccccceeEEEEEecC-Cc
Confidence            44568999999999999999998876544331110000    0         0 11111100      012233333 33


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       141 i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                      ++.-.+.+..  .+...+.+  ..+.=+.|+||-|++...      +...+-+-....|..++||-|..+....+     
T Consensus       180 ~~rlknPld~--aE~~~vv~--~aDklVsfVDtvGHEpwL------rTtirGL~gqk~dYglLvVaAddG~~~~t-----  244 (527)
T COG5258         180 VVRLKNPLDE--AEKAAVVK--RADKLVSFVDTVGHEPWL------RTTIRGLLGQKVDYGLLVVAADDGVTKMT-----  244 (527)
T ss_pred             eEeecCcccH--HHHhHhhh--hcccEEEEEecCCccHHH------HHHHHHHhccccceEEEEEEccCCcchhh-----
Confidence            4332221221  22222222  233456799999996531      12222233356899999999999988766     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH-Hh-hhhHhhhhcCCceEEeecccC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN-SL-SLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~vv~vSA~~g  298 (426)
                      ...+.++...++|+|+|++|+|++..+......+.+..++.....-+-....... .+ +........-+|+|.+|+.+|
T Consensus       245 kEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg  324 (527)
T COG5258         245 KEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG  324 (527)
T ss_pred             hHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC
Confidence            4456777888999999999999999988888888888776653321111100000 00 111111112479999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEESAQE  314 (426)
Q Consensus       299 ~gv~~l~~~l~~~~~~  314 (426)
                      +|++-|.+.+ ..+|.
T Consensus       325 ~GldlL~e~f-~~Lp~  339 (527)
T COG5258         325 EGLDLLDEFF-LLLPK  339 (527)
T ss_pred             ccHHHHHHHH-HhCCc
Confidence            9987664443 33443

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.06  E-value=1.5e-10  Score=104.58  Aligned_cols=129  Identities=18%  Similarity=0.209  Sum_probs=103.2

Q ss_pred             hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------
Q 014354           38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----------  106 (426)
Q Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----------  106 (426)
                      .+.|.+++++..+        .+.++....++.+|+++||+||||||.+..++|-..+..+++.+.+.|           
T Consensus         7 a~~l~K~y~kr~V--------v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr   78 (243)
T COG1137           7 AENLAKSYKKRKV--------VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR   78 (243)
T ss_pred             ehhhhHhhCCeee--------eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence            4678889998888        788888899999999999999999999999999999999999998887           


Q ss_pred             ccccccccccccc----hhh------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhc
Q 014354          107 PAVMTLPFAANID----IRD------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD  164 (426)
Q Consensus       107 ~~v~~~~~~t~i~----~r~------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~  164 (426)
                      .++...|+.+.+.    +.+                  ..+++.+++.|++..-..-..  -.+|+|.+.++++|+++..
T Consensus        79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--~sLSGGERRR~EIARaLa~  156 (243)
T COG1137          79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--YSLSGGERRRVEIARALAA  156 (243)
T ss_pred             cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--cccccchHHHHHHHHHHhc
Confidence            2466777776542    111                  123457788888765322211  2489999999999999999


Q ss_pred             CCCEEEEcCC--Cc
Q 014354          165 HLDYVLVDTP--GQ  176 (426)
Q Consensus       165 ~~~~~liDTP--Gi  176 (426)
                      ++.++++|.|  |+
T Consensus       157 ~P~fiLLDEPFAGV  170 (243)
T COG1137         157 NPKFILLDEPFAGV  170 (243)
T ss_pred             CCCEEEecCCccCC
Confidence            9999999999  65

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.05  E-value=3.9e-09  Score=94.78  Aligned_cols=120  Identities=18%  Similarity=0.231  Sum_probs=90.0

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc---ccccccc------------------
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---MTLPFAA------------------  116 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v---~~~~~~t------------------  116 (426)
                      +..+.+....++.++-|+|++||||||||+.|.+...+..+.+.+.+.|-.-   ..+|+-.                  
T Consensus        17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tv   96 (223)
T COG2884          17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTV   96 (223)
T ss_pred             hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchH
Confidence            4667777788999999999999999999999999999999888887776211   0111110                  


Q ss_pred             --ccc-------h-h--hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354          117 --NID-------I-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI  179 (426)
Q Consensus       117 --~i~-------~-r--~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~  179 (426)
                        |+.       . +  -..++.++++.+||......+..  .||+|.+|++.+|+|....+.+++-|.| |-.++
T Consensus        97 yeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp  170 (223)
T COG2884          97 YENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS--QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP  170 (223)
T ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc--ccCchHHHHHHHHHHHccCCCeEeecCCCCCCCh
Confidence              110       0 0  11245677888888876555443  6899999999999999999999999999 76665

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.05  E-value=2.3e-09  Score=104.47  Aligned_cols=147  Identities=17%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccc
Q 014354           35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF  114 (426)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~  114 (426)
                      ..-+..|.+.++++...              ..+..+|+|+|.+|+|||||+|+|++.....            ++..+.
T Consensus        18 ~~tq~~l~~~l~~l~~~--------------~~~~~rIllvGktGVGKSSliNsIlG~~v~~------------vs~f~s   71 (313)
T TIGR00991        18 PATQTKLLELLGKLKEE--------------DVSSLTILVMGKGGVGKSSTVNSIIGERIAT------------VSAFQS   71 (313)
T ss_pred             HHHHHHHHHHHHhcccc--------------cccceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCC
Confidence            34467777888887762              2356789999999999999999999987432            111111


Q ss_pred             ccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchH-HHHHHHH
Q 014354          115 AANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAF  193 (426)
Q Consensus       115 ~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~-~~l~~~~  193 (426)
                      ++ .  +                  ..+.+     .           ...+..+.||||||+.+........ ..+....
T Consensus        72 ~t-~--~------------------~~~~~-----~-----------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        72 EG-L--R------------------PMMVS-----R-----------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cc-e--e------------------EEEEE-----E-----------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            11 0  0                  00000     0           0145789999999998752211111 1111122


Q ss_pred             HhcCCcEEEEEEe--CCCCCCchhhhhhHHHHHHHH-hhccCCeEEEEecCCCCCh
Q 014354          194 ASTFPTVVTYVVD--TPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       194 ~~~~~d~vl~VVD--a~~~~~~~~~~~~~l~~~~~l-~~~~~P~IlVlNKiDl~~~  246 (426)
                      ....+|++|||..  ..+ .+..+.. ....+...+ ...-.+.|+|+++.|...+
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~Dkq-lLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQ-VIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHH-HHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            2235899999954  433 2221110 011111111 1334678999999998754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.05  E-value=4.9e-09  Score=104.81  Aligned_cols=176  Identities=15%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+..|+|+|.+|+|||||+|+|.|-.....+.+.+     ++   ..||    ....                 .+.   
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t-----Gv---~etT----~~~~-----------------~Y~---   81 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT-----GV---VETT----MEPT-----------------PYP---   81 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S-----SS---HSCC----TS-E-----------------EEE---
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC-----CC---CcCC----CCCe-----------------eCC---
Confidence            45689999999999999999998754332221110     01   0111    0000                 000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ..+-+.+++||.||+..+.  .. .....+.+.-...|++|++.+..       |..+....+..+
T Consensus        82 --------------~p~~pnv~lWDlPG~gt~~--f~-~~~Yl~~~~~~~yD~fiii~s~r-------f~~ndv~La~~i  137 (376)
T PF05049_consen   82 --------------HPKFPNVTLWDLPGIGTPN--FP-PEEYLKEVKFYRYDFFIIISSER-------FTENDVQLAKEI  137 (376)
T ss_dssp             ---------------SS-TTEEEEEE--GGGSS-----HHHHHHHTTGGG-SEEEEEESSS---------HHHHHHHHHH
T ss_pred             --------------CCCCCCCeEEeCCCCCCCC--CC-HHHHHHHccccccCEEEEEeCCC-------CchhhHHHHHHH
Confidence                          0133689999999996642  11 11122222234468877766542       222223445667


Q ss_pred             hhccCCeEEEEecCCCC-ChH------hH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-
Q 014354          228 YKTRLPLVLAFNKTDVA-QHE------FA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-  297 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~-~~~------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~-  297 (426)
                      .+.++|+.+|-+|+|.. ...      ..  .+.++.++.             .....+..   .-....++|-||+.. 
T Consensus       138 ~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~-------------~c~~~L~k---~gv~~P~VFLVS~~dl  201 (376)
T PF05049_consen  138 QRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE-------------NCLENLQK---AGVSEPQVFLVSSFDL  201 (376)
T ss_dssp             HHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH-------------HHHHHHHC---TT-SS--EEEB-TTTT
T ss_pred             HHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH-------------HHHHHHHH---cCCCcCceEEEeCCCc
Confidence            78899999999999951 100      00  011111110             00111110   112335788899865 


Q ss_pred             -CCCHHHHHHHHHHHHHHH
Q 014354          298 -GAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       298 -g~gv~~l~~~l~~~~~~~  315 (426)
                       ..++..|.+.|..-+|..
T Consensus       202 ~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  202 SKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             TSTTHHHHHHHHHHHS-GG
T ss_pred             ccCChHHHHHHHHHHhHHH
Confidence             446778888888776664

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PTZ00099 rab6; Provisional

Probab=99.03  E-value=1e-09  Score=99.64  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC--chhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~--~~~~~~~~l~~~~~l~~~~~P~IlVlNKi  241 (426)
                      +..++.||||||+..+.       .+...+ -..+|++|+|+|.+...+  ....|   +..+........|+|||+||+
T Consensus        27 ~~v~l~iwDt~G~e~~~-------~~~~~~-~~~ad~~ilv~D~t~~~sf~~~~~w---~~~i~~~~~~~~piilVgNK~   95 (176)
T PTZ00099         27 GPVRLQLWDTAGQERFR-------SLIPSY-IRDSAAAIVVYDITNRQSFENTTKW---IQDILNERGKDVIIALVGNKT   95 (176)
T ss_pred             EEEEEEEEECCChHHhh-------hccHHH-hCCCcEEEEEEECCCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECc
Confidence            34789999999997752       111111 145799999999876332  11111   111111112468899999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~  316 (426)
                      |+.....+.  ......+.                      ..+ ...++++||++|.||.++|.+|.+.+++.+
T Consensus        96 DL~~~~~v~--~~e~~~~~----------------------~~~-~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         96 DLGDLRKVT--YEEGMQKA----------------------QEY-NTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             ccccccCCC--HHHHHHHH----------------------HHc-CCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            997532110  00000000                      111 245899999999999999999998877643

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.6e-09  Score=104.20  Aligned_cols=208  Identities=15%  Similarity=0.152  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+++++|-..+|||||+..|++.....++--+-+|.-.....+..+.+..+        ..+.+|++..|.++..    +
T Consensus       168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsi--------s~evlGFd~~g~vVNY----~  235 (591)
T KOG1143|consen  168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSI--------SNEVLGFDNRGKVVNY----A  235 (591)
T ss_pred             EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccccc--------chhcccccccccccch----h
Confidence            489999999999999999999887665432222222111111110100000        1223444444444431    1


Q ss_pred             c--cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 T--KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~--~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      .  ..++++...     ..-+.|||.+|+..+..      .....+..--++++++||.|..++...+     +..+.++
T Consensus       236 ~~~taEEi~e~S-----SKlvTfiDLAGh~kY~~------TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-----rEHLgl~  299 (591)
T KOG1143|consen  236 QNMTAEEIVEKS-----SKLVTFIDLAGHAKYQK------TTIHGLTGYTPHFACLVVSADRGITWTT-----REHLGLI  299 (591)
T ss_pred             hcccHHHHHhhh-----cceEEEeecccchhhhe------eeeeecccCCCceEEEEEEcCCCCcccc-----HHHHHHH
Confidence            1  122222111     13567999999987631      1111223334799999999999998766     4566777


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchh------hhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYT------STLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      ...++|++++++|+|+..+..+.+..+++..++....+.+..+      ..+......   ...+-+|+|.+|..+|+|+
T Consensus       300 ~AL~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~---~s~nivPif~vSsVsGegl  376 (591)
T KOG1143|consen  300 AALNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQEL---CSGNIVPIFAVSSVSGEGL  376 (591)
T ss_pred             HHhCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHh---ccCCceeEEEEeecCccch
Confidence            8889999999999999999887778777777666543322111      111111100   1234479999999999998


Q ss_pred             HHHHHHH
Q 014354          302 EAYFKAV  308 (426)
Q Consensus       302 ~~l~~~l  308 (426)
                      .-|...|
T Consensus       377 ~ll~~fL  383 (591)
T KOG1143|consen  377 RLLRTFL  383 (591)
T ss_pred             hHHHHHH
Confidence            7665444

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.01  E-value=3.2e-09  Score=95.71  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=98.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc---------------Ccccccccccccc-----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---------------DPAVMTLPFAANI-----  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~---------------d~~v~~~~~~t~i-----  118 (426)
                      ..+.+.....+-.|+++|++|+|||||||.+.|-..+..+.+.+.+-               +.-..+...-.|+     
T Consensus        21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~  100 (259)
T COG4525          21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQ  100 (259)
T ss_pred             hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHH
Confidence            55666677788899999999999999999999988777655544332               1111111100111     


Q ss_pred             --chhhhH---HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-CcccccchhchHHHHHHH
Q 014354          119 --DIRDTI---RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA  192 (426)
Q Consensus       119 --~~r~~~---~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~~~~~l~~~  192 (426)
                        ++....   ...+.+..+|+........  -.+|++|+|++.+++++.-+++++++|.| |-.+..++..+...+.+.
T Consensus       101 l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i--~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl  178 (259)
T COG4525         101 LRGIEKAQRREIAHQMLALVGLEGAEHKYI--WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL  178 (259)
T ss_pred             hcCCCHHHHHHHHHHHHHHhCcccccccce--EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence              111111   2345677788776543222  24899999999999999999999999999 777777777777777777


Q ss_pred             HHhcCCcEEEEEEe
Q 014354          193 FASTFPTVVTYVVD  206 (426)
Q Consensus       193 ~~~~~~d~vl~VVD  206 (426)
                      ++.+..-+.++..|
T Consensus       179 w~~tgk~~lliTH~  192 (259)
T COG4525         179 WQETGKQVLLITHD  192 (259)
T ss_pred             HHHhCCeEEEEecc
Confidence            77655444444333

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.01  E-value=7e-10  Score=110.03  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc------------------cccccccccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAANID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v------------------~~~~~~t~i~-  119 (426)
                      ..+.++...++.+++++||+||||||||+.|.|-..+.++.+.+.+.+..-                  ..+....||. 
T Consensus        21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVaf  100 (352)
T COG3842          21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF  100 (352)
T ss_pred             EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhh
Confidence            667778888999999999999999999999999999999988887665210                  0001111111 


Q ss_pred             -hh-------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Cccc
Q 014354          120 -IR-------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE  178 (426)
Q Consensus       120 -~r-------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e  178 (426)
                       ++       .  ..++.+.++.+++...+.....  .+|+|++|++.+|+++..+++++++|.| +-.+
T Consensus       101 GLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD  168 (352)
T COG3842         101 GLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVPEPKVLLLDEPLSALD  168 (352)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhcCcchhhhcCcccchh
Confidence             11       1  1256778888998887665543  6899999999999999999999999999 4444

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.99  E-value=5.6e-09  Score=93.19  Aligned_cols=69  Identities=23%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKi  241 (426)
                      ...+.||||||+......+.  ..+.+++  ..+|++|||+++.........    .++..........+|+|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~--~~~~~~~--~~~d~vi~V~~~~~~~~~~~~----~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHT--EITEEYL--PKADVVIFVVDANQDLTESDM----EFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTS--HHHHHHH--STTEEEEEEEETTSTGGGHHH----HHHHHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhH--HHHHHhh--ccCCEEEEEeccCcccchHHH----HHHHHHhcCCCCeEEEEEcCC
Confidence            36799999999976422111  3333444  568999999999886654431    233334445556689999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.9e-09  Score=100.25  Aligned_cols=140  Identities=19%  Similarity=0.207  Sum_probs=85.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++...|+.||+.+.|||||..+|+......+...+. ..+ .....|..               +..|+..|...+-.  
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~-~y~-~id~aPeE---------------k~rGITIntahvey--   70 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK-AYD-QIDNAPEE---------------KARGITINTAHVEY--   70 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhcccccc-chh-hhccCchH---------------hhcCceeccceeEE--
Confidence            356789999999999999999999876443211100 000 00011111               12222222221110  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ...+..|-.+|.||+.++-      ++++..  ++..|.+|+||.|..+.-+++.     ..+-+
T Consensus        71 ---------------et~~rhyahVDcPGHaDYv------KNMItg--AaqmDgAILVVsA~dGpmPqTr-----EHiLl  122 (394)
T COG0050          71 ---------------ETANRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQTR-----EHILL  122 (394)
T ss_pred             ---------------ecCCceEEeccCCChHHHH------HHHhhh--HHhcCccEEEEEcCCCCCCcch-----hhhhh
Confidence                           0244688999999998852      222221  1346899999999999999883     33334


Q ss_pred             HhhccCCeEE-EEecCCCCChHhHHHHH
Q 014354          227 LYKTRLPLVL-AFNKTDVAQHEFALEWM  253 (426)
Q Consensus       227 l~~~~~P~Il-VlNKiDl~~~~~~~~~~  253 (426)
                      .++.+.|.|+ ++||+|+++..++.++.
T Consensus       123 arqvGvp~ivvflnK~Dmvdd~ellelV  150 (394)
T COG0050         123 ARQVGVPYIVVFLNKVDMVDDEELLELV  150 (394)
T ss_pred             hhhcCCcEEEEEEecccccCcHHHHHHH
Confidence            6788998665 69999999976655443

>cd01900 YchF YchF subfamily

Probab=98.98  E-value=1.1e-09  Score=105.85  Aligned_cols=102  Identities=20%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK  151 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~  151 (426)
                      |+|+|.||||||||+|+|++....             +.++|++|    ++              |+-|++.-   -...
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~-------------~~n~pftT----i~--------------p~~g~v~v---~d~r   46 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAE-------------AANYPFCT----IE--------------PNVGIVPV---PDER   46 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCc-------------cccccccc----hh--------------ceeeeEEe---ccch
Confidence            589999999999999999998742             56677776    21              22233321   0011


Q ss_pred             HHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          152 FDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       152 ~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      ++++....... .-..++.|+||||+....... .++..+...+  ..+|++++|||++.
T Consensus        47 ~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i--~~~D~li~VV~~f~  104 (274)
T cd01900          47 LDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHI--REVDAIAHVVRCFE  104 (274)
T ss_pred             hhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHH--HhCCEEEEEEeCcC
Confidence            11111111000 011369999999998653211 1222222222  45899999999864

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PLN00023 GTP-binding protein; Provisional

Probab=98.97  E-value=4.2e-09  Score=103.39  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ....+|+|+|..|||||||++++++..+.
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~   47 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSI   47 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcc
Confidence            34578999999999999999999987643

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.96  E-value=1.2e-07  Score=97.46  Aligned_cols=154  Identities=21%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+|+++|++|+||||++..|.......+.++.++..|+.-   + +.    .+  ....+...+++...+.. .   
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R---~-aa----~e--QL~~la~~~gvp~~~~~-~---  158 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR---P-AA----YD--QLKQLAEKIGVPFYGDP-D---  158 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC---H-HH----HH--HHHHHHHHcCCcEEecC-C---
Confidence            4577999999999999999999998877777888888777421   1 10    00  11112223332211000 0   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .......+.-+.......+++||||||....  ...+-..+........++.+++|+|+..+.+.       ......
T Consensus       159 --~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~--d~~lm~El~~l~~~~~pdevlLVvda~~gq~a-------v~~a~~  227 (437)
T PRK00771        159 --NKDAVEIAKEGLEKFKKADVIIVDTAGRHAL--EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQA-------KNQAKA  227 (437)
T ss_pred             --ccCHHHHHHHHHHHhhcCCEEEEECCCcccc--hHHHHHHHHHHHHHhcccceeEEEeccccHHH-------HHHHHH
Confidence              0111111111111223469999999997553  12222223333333457899999999775211       111121


Q ss_pred             HhhccC-CeEEEEecCCCCCh
Q 014354          227 LYKTRL-PLVLAFNKTDVAQH  246 (426)
Q Consensus       227 l~~~~~-P~IlVlNKiDl~~~  246 (426)
                      ... .+ ..-+|+||+|....
T Consensus       228 F~~-~l~i~gvIlTKlD~~a~  247 (437)
T PRK00771        228 FHE-AVGIGGIIITKLDGTAK  247 (437)
T ss_pred             HHh-cCCCCEEEEecccCCCc
Confidence            111 22 34688999997654

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.95  E-value=6.5e-09  Score=99.89  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=89.7

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------------cccccc
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPF  114 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------------v~~~~~  114 (426)
                      +..+++...+++-+.+|+|++|||||||++.+-+...+..+.+.|.+.+-.                       .+....
T Consensus        21 al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV  100 (339)
T COG1135          21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTV  100 (339)
T ss_pred             eeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchH
Confidence            466778888999999999999999999999999999999999988886511                       000111


Q ss_pred             ccccc----------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          115 AANID----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       115 ~t~i~----------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                      ..|+.          -.-..++.++++.+|+.....-...  .||+|++|++.+|+|+..++++++.|.|-.
T Consensus       101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~~P~iLL~DEaTS  170 (339)
T COG1135         101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDEATS  170 (339)
T ss_pred             HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence            11111          0112256788999999976665543  689999999999999999999999999953

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.94  E-value=1.5e-08  Score=89.62  Aligned_cols=118  Identities=16%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------------------cccccccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMTLPFAA-  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------------------v~~~~~~t-  116 (426)
                      ...+.....++..|+|+|++||||||||-.+.|...+.++.+++.+.+-.                     +.-+|.-+ 
T Consensus        26 L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltA  105 (228)
T COG4181          26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTA  105 (228)
T ss_pred             eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchh
Confidence            56677778889999999999999999999999999999998888776510                     00111111 


Q ss_pred             --ccc---------hh-hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Cccc
Q 014354          117 --NID---------IR-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE  178 (426)
Q Consensus       117 --~i~---------~r-~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e  178 (426)
                        |+.         .+ ......++++++|++..-..+.  ..+|++.+|++.+++++...++++|-|.| |-.+
T Consensus       106 lENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP--~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD  178 (228)
T COG4181         106 LENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP--AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD  178 (228)
T ss_pred             hhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc--cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcc
Confidence              111         11 1224567899999987654443  36899999999999999999999999999 6554

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=2e-09  Score=111.37  Aligned_cols=138  Identities=21%  Similarity=0.231  Sum_probs=82.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .....|+++|+.++|||+|+..|..+..+...+..       -....|+.+....         .+.|..-.   .+...
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-------e~~lrytD~l~~E---------~eRg~sIK---~~p~T  186 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNT-------EADLRYTDTLFYE---------QERGCSIK---STPVT  186 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccc-------cccccccccchhh---------HhcCceEe---ecceE
Confidence            34578999999999999999999998765432110       0111222211100         01111110   01111


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      ++-...         ..+.+-+.|+|||||.++.      ..++..+  +.+|.+|+|||+.+++.-..     ..+++.
T Consensus       187 l~l~D~---------~~KS~l~nilDTPGHVnF~------DE~ta~l--~~sDgvVlvvDv~EGVmlnt-----Er~ikh  244 (971)
T KOG0468|consen  187 LVLSDS---------KGKSYLMNILDTPGHVNFS------DETTASL--RLSDGVVLVVDVAEGVMLNT-----ERIIKH  244 (971)
T ss_pred             EEEecC---------cCceeeeeeecCCCcccch------HHHHHHh--hhcceEEEEEEcccCceeeH-----HHHHHH
Confidence            111111         1234567899999998863      2222222  44799999999999886544     234455


Q ss_pred             HhhccCCeEEEEecCCCCC
Q 014354          227 LYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.++|+++|+||+|+.-
T Consensus       245 aiq~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  245 AIQNRLPIVVVINKVDRLI  263 (971)
T ss_pred             HHhccCcEEEEEehhHHHH
Confidence            6678999999999999763

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.93  E-value=2.8e-09  Score=99.38  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=95.0

Q ss_pred             hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------
Q 014354           38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------  108 (426)
Q Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------  108 (426)
                      .+.|+++++.+..        .++++....++.+++||||+|||||||+|.|+|...+..+.+...+.+..         
T Consensus         7 v~~l~k~FGGl~A--------l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar   78 (250)
T COG0411           7 VRGLSKRFGGLTA--------VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR   78 (250)
T ss_pred             eccceeecCCEEE--------EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence            4567777888877        88889999999999999999999999999999999999988887766511         


Q ss_pred             --ccc-------ccccc---ccch--h--------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHH
Q 014354          109 --VMT-------LPFAA---NIDI--R--------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDE  154 (426)
Q Consensus       109 --v~~-------~~~~t---~i~~--r--------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~  154 (426)
                        +..       ++.-+   |+-+  .                    -.-+..++++.+++.+...-..  ..|+.+.++
T Consensus        79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--~~LsyG~qR  156 (250)
T COG0411          79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--GNLSYGQQR  156 (250)
T ss_pred             ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--hcCChhHhH
Confidence              000       00000   1101  0                    0012345688888887655433  258999999


Q ss_pred             HHHHHHHHhcCCCEEEEcCCC
Q 014354          155 VISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       155 ~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++++++++..++.++++|.|-
T Consensus       157 ~LEIArALa~~P~lLLLDEPa  177 (250)
T COG0411         157 RLEIARALATQPKLLLLDEPA  177 (250)
T ss_pred             HHHHHHHHhcCCCEEEecCcc
Confidence            999999999999999999994

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.1e-08  Score=98.10  Aligned_cols=146  Identities=15%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc---Cccc------------------cccccccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPAV------------------MTLPFAAN  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~---d~~v------------------~~~~~~t~  117 (426)
                      ..+.+...+.+..++++|++||||||||+.|.|-..+..+.+.+-+-   |..-                  ..+....|
T Consensus        18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~N   97 (345)
T COG1118          18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADN   97 (345)
T ss_pred             cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhh
Confidence            44566667788899999999999999999999999998888776655   3110                  00000011


Q ss_pred             cc------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccccchhc
Q 014354          118 ID------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSA  184 (426)
Q Consensus       118 i~------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~~  184 (426)
                      |.            ...+.++.+++..+++..-+.....  .+|+|++|++.+|+++.-.+.++++|.| |-.+..-...
T Consensus        98 IAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~  175 (345)
T COG1118          98 IAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE  175 (345)
T ss_pred             hhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHH
Confidence            11            1233456778888888776655543  6899999999999999999999999999 5555432333


Q ss_pred             hHHHHHHHHHhcCCcEEEEEEe
Q 014354          185 SGAIITEAFASTFPTVVTYVVD  206 (426)
Q Consensus       185 ~~~~l~~~~~~~~~d~vl~VVD  206 (426)
                      +...+.+.........+++-.|
T Consensus       176 lr~wLr~~~~~~~~ttvfVTHD  197 (345)
T COG1118         176 LRRWLRKLHDRLGVTTVFVTHD  197 (345)
T ss_pred             HHHHHHHHHHhhCceEEEEeCC
Confidence            3444444443333334444334

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=3.2e-09  Score=93.74  Aligned_cols=160  Identities=18%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+++|+|-.++||||++++.+...+..+..-.                |                            
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykkt----------------I----------------------------   53 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT----------------I----------------------------   53 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccc----------------c----------------------------
Confidence            35678999999999999999999976554322111                1                            


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC--CCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~--~~~~~~~~~~l~~~  224 (426)
                          +.+.+....+....+..+.+|||+|+.++.      .+...+++.+.+  .++|...+..  +....-|      -
T Consensus        54 ----gvdflerqi~v~~Edvr~mlWdtagqeEfD------aItkAyyrgaqa--~vLVFSTTDr~SFea~~~w------~  115 (246)
T KOG4252|consen   54 ----GVDFLERQIKVLIEDVRSMLWDTAGQEEFD------AITKAYYRGAQA--SVLVFSTTDRYSFEATLEW------Y  115 (246)
T ss_pred             ----chhhhhHHHHhhHHHHHHHHHHhccchhHH------HHHHHHhccccc--eEEEEecccHHHHHHHHHH------H
Confidence                011111112222344567799999999872      233344444444  4444444332  2222111      1


Q ss_pred             HHHh--hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          225 SILY--KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       225 ~~l~--~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      ..+.  --.+|.|+|-||||++...... ...+.+.                 +.+         ..+.+.+|++..-+|
T Consensus       116 ~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~la-----------------k~l---------~~RlyRtSvked~NV  169 (246)
T KOG4252|consen  116 NKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----------------KKL---------HKRLYRTSVKEDFNV  169 (246)
T ss_pred             HHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHH-----------------HHh---------hhhhhhhhhhhhhhh
Confidence            1111  2479999999999999765321 1111111                 111         123556999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      ..+|.+|.+.+..
T Consensus       170 ~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQ  182 (246)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877654

>PRK10867 signal recognition particle protein; Provisional

Probab=98.92  E-value=9.7e-08  Score=97.93  Aligned_cols=155  Identities=19%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++.+|+++|++||||||++-.|....... +.++.++..|+.-   +       ...-....+.+..++.-...- ...
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R---~-------aa~eQL~~~a~~~gv~v~~~~-~~~  166 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR---P-------AAIEQLKTLGEQIGVPVFPSG-DGQ  166 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc---h-------HHHHHHHHHHhhcCCeEEecC-CCC
Confidence            456799999999999999999999877666 7889998887521   1       000111122233332210000 000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      + ...-....+.  .+...+++++||||||....  ...+...+........++-+++|+|+..+.   .-    .....
T Consensus       167 d-p~~i~~~a~~--~a~~~~~DvVIIDTaGrl~~--d~~lm~eL~~i~~~v~p~evllVlda~~gq---~a----v~~a~  234 (433)
T PRK10867        167 D-PVDIAKAALE--EAKENGYDVVIVDTAGRLHI--DEELMDELKAIKAAVNPDEILLVVDAMTGQ---DA----VNTAK  234 (433)
T ss_pred             C-HHHHHHHHHH--HHHhcCCCEEEEeCCCCccc--CHHHHHHHHHHHHhhCCCeEEEEEecccHH---HH----HHHHH
Confidence            0 0111111111  22346799999999997542  122222333333334577889999986432   11    11111


Q ss_pred             HHhhccC-CeEEEEecCCCCC
Q 014354          226 ILYKTRL-PLVLAFNKTDVAQ  245 (426)
Q Consensus       226 ~l~~~~~-P~IlVlNKiDl~~  245 (426)
                      .... .+ ..-+|+||.|...
T Consensus       235 ~F~~-~~~i~giIlTKlD~~~  254 (433)
T PRK10867        235 AFNE-ALGLTGVILTKLDGDA  254 (433)
T ss_pred             HHHh-hCCCCEEEEeCccCcc
Confidence            1221 22 2467889999654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.91  E-value=2.3e-08  Score=93.45  Aligned_cols=132  Identities=14%  Similarity=0.116  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|..||||||+.|.|+|.......          .+..+.+..                      +-...     .
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----------~~~~~~t~~----------------------~~~~~-----~   44 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSG----------SSAKSVTQE----------------------CQKYS-----G   44 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-----------------------EEEE-----E
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeec----------cccCCcccc----------------------cceee-----e
Confidence            6899999999999999999998753210          111111110                      00000     0


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                 ...+..+.||||||+.+.... ......+.+.+..  ..++++|+|+... .++..+.. ....+...+
T Consensus        45 -----------~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~F  111 (212)
T PF04548_consen   45 -----------EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIF  111 (212)
T ss_dssp             -----------EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHH
T ss_pred             -----------eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHc
Confidence                       024578999999999765211 1111223333322  2378999999987 44432211 001111111


Q ss_pred             h-hccCCeEEEEecCCCCChHhHHHH
Q 014354          228 Y-KTRLPLVLAFNKTDVAQHEFALEW  252 (426)
Q Consensus       228 ~-~~~~P~IlVlNKiDl~~~~~~~~~  252 (426)
                      . ..-.-+|||++..|......+.+.
T Consensus       112 G~~~~k~~ivvfT~~d~~~~~~~~~~  137 (212)
T PF04548_consen  112 GEEIWKHTIVVFTHADELEDDSLEDY  137 (212)
T ss_dssp             CGGGGGGEEEEEEEGGGGTTTTHHHH
T ss_pred             cHHHHhHhhHHhhhccccccccHHHH
Confidence            1 223347889999998877654333

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.91  E-value=1.5e-08  Score=93.48  Aligned_cols=152  Identities=19%  Similarity=0.206  Sum_probs=82.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+++++|++||||||.+-+|.......+.++.++..|..-    .+.    .+  ..+..-+.+++.     +.....-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----~ga----~e--QL~~~a~~l~vp-----~~~~~~~   65 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----IGA----VE--QLKTYAEILGVP-----FYVARTE   65 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----THH----HH--HHHHHHHHHTEE-----EEESSTT
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----ccH----HH--HHHHHHHHhccc-----cchhhcc
Confidence            46899999999999999999999887778888888766321    010    11  111112222211     0000000


Q ss_pred             cc---cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          149 TT---KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       149 s~---~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .+   -..+.+.  ....++++++||||||....  ....-..+.+.+....++-+++|++++.+......      +..
T Consensus        66 ~~~~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~------~~~  135 (196)
T PF00448_consen   66 SDPAEIAREALE--KFRKKGYDLVLIDTAGRSPR--DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ------ALA  135 (196)
T ss_dssp             SCHHHHHHHHHH--HHHHTTSSEEEEEE-SSSST--HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH------HHH
T ss_pred             hhhHHHHHHHHH--HHhhcCCCEEEEecCCcchh--hHHHHHHHHHHhhhcCCccceEEEecccChHHHHH------HHH
Confidence            11   1111111  12245689999999998653  12222334444444567899999999765432221      111


Q ss_pred             HHhhccCCeEEEEecCCCCCh
Q 014354          226 ILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~  246 (426)
                       ....--+.=+|++|.|-...
T Consensus       136 -~~~~~~~~~lIlTKlDet~~  155 (196)
T PF00448_consen  136 -FYEAFGIDGLILTKLDETAR  155 (196)
T ss_dssp             -HHHHSSTCEEEEESTTSSST
T ss_pred             -HhhcccCceEEEEeecCCCC
Confidence             11222245677999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.91  E-value=2.1e-09  Score=97.33  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=85.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccccc----hhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANID----IRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i~----~r~---  122 (426)
                      ..+++.....+.+++|+|++||||||+|+.|..-..+..+.++|.+.|..         +...++...+-    .+.   
T Consensus        18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~   97 (245)
T COG4555          18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK   97 (245)
T ss_pred             hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence            55667778889999999999999999999999999999999999988732         11112222111    111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ..++.++++.+++..-  +-.-..-||+|+++++.+|+++..++.++++|.|
T Consensus        98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~--~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP  160 (245)
T COG4555          98 YFARLNGLSRKEIKARIAELSKRLQLLEY--LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP  160 (245)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHhChHHH--HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence                         2245677888886642  2222234899999999999999999999999999

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1e-08  Score=101.27  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------------cccccccc---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------VMTLPFAA---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------------v~~~~~~t---~i~-  119 (426)
                      ..+.+.....+.+++|+||+||||||||+.|.|-..+.++.+.|.+.+-.               ..-+|+-+   |+. 
T Consensus        19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf   98 (338)
T COG3839          19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAF   98 (338)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhh
Confidence            45566777888999999999999999999999999999988888766511               01112211   111 


Q ss_pred             -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                       ++        ..-+++++.+.+++..-..-.  -..+|+|++|++++++++..++++.++|.|=.
T Consensus        99 ~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~--P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS  162 (338)
T COG3839          99 GLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK--PLQLSGGQRQRVALARALVRKPKVFLLDEPLS  162 (338)
T ss_pred             hhhhCCCchHHHHHHHHHHHHHcCChhHHhcC--cccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence             11        122456778888877543322  23589999999999999999999999999954

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=9.2e-09  Score=93.93  Aligned_cols=143  Identities=13%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------------ccccccccccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------------VMTLPFAANIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------------v~~~~~~t~i~~  120 (426)
                      ....+...+++.+++|+||+|+||||||+.|+|...+.++.+.+.+.+..                  ...+||+.    
T Consensus        17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv----   92 (259)
T COG4559          17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV----   92 (259)
T ss_pred             ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH----
Confidence            56677778889999999999999999999999999989888888777621                  11222221    


Q ss_pred             hhhH------------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC------CCEEEEcCCCc
Q 014354          121 RDTI------------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH------LDYVLVDTPGQ  176 (426)
Q Consensus       121 r~~~------------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~------~~~~liDTPGi  176 (426)
                      ++.+                  -..+.|...++....+-.+  ..+|+|.++++.+++.+..-      ..|+|+|.|-.
T Consensus        93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts  170 (259)
T COG4559          93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS  170 (259)
T ss_pred             HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence            2211                  1345677777665555433  25899999999999877542      35889999954


Q ss_pred             ccccchhchHHHHHHHHHhcCCcEEEEEEeC
Q 014354          177 IEIFTWSASGAIITEAFASTFPTVVTYVVDT  207 (426)
Q Consensus       177 ~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa  207 (426)
                      .---.|......+.+.+....+-+++++.|.
T Consensus       171 aLDi~HQ~~tl~laR~la~~g~~V~~VLHDL  201 (259)
T COG4559         171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDL  201 (259)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence            2211223333445566665556666666675

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.88  E-value=2.4e-09  Score=99.99  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      -.+|+++|+|.+|||||+..|++....             |..+.+++.+.+                  .|+..     
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~-------------vasyefttl~~v------------------pG~~~-----  102 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSE-------------VAAYEFTTLTTV------------------PGVIR-----  102 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCc-------------cccccceeEEEe------------------cceEe-----
Confidence            348999999999999999999998633             444444542211                  12221     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH------
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML------  221 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l------  221 (426)
                                    .++..+++.|.||+++....+ ..++++....  .-|.+++.|+|....++........+      
T Consensus       103 --------------y~gaKiqlldlpgiiegakdgkgrg~qviava--rtcnli~~vld~~kp~~hk~~ie~eleg~gir  166 (358)
T KOG1487|consen  103 --------------YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA--RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIR  166 (358)
T ss_pred             --------------ccccceeeecCcchhcccccCCCCccEEEEEe--ecccEEEEEeeccCcccHHHHHHHhhhcceee
Confidence                          356899999999999964321 1333332211  23688889999866544322111110      


Q ss_pred             -------------------------------HH-------------------HHHH---h--hccCCeEEEEecCCCCCh
Q 014354          222 -------------------------------YA-------------------CSIL---Y--KTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       222 -------------------------------~~-------------------~~~l---~--~~~~P~IlVlNKiDl~~~  246 (426)
                                                     .+                   -+++   .  ..-+|.|.++||+|-++-
T Consensus       167 lnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi  246 (358)
T KOG1487|consen  167 LNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISI  246 (358)
T ss_pred             ccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeee
Confidence                                           00                   0111   1  124688899999998876


Q ss_pred             HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +++.-                                .|.....+++||-+++++++++..+.+.+.-
T Consensus       247 EELdi--------------------------------i~~iphavpISA~~~wn~d~lL~~mweyL~L  282 (358)
T KOG1487|consen  247 EELDI--------------------------------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL  282 (358)
T ss_pred             eccce--------------------------------eeeccceeecccccccchHHHHHHHhhcchh
Confidence            54321                                1233458999999999999999888776544

>TIGR00959 ffh signal recognition particle protein

Probab=98.87  E-value=5.5e-07  Score=92.38  Aligned_cols=155  Identities=18%  Similarity=0.197  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc-cCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++.+++++|++|+||||++-.|..... ..+.++.++..|+.-   |       .....++.+.++.++...... ...
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R---~-------~a~~QL~~~a~~~gvp~~~~~-~~~  165 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR---P-------AAIEQLKVLGQQVGVPVFALG-KGQ  165 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc---h-------HHHHHHHHHHHhcCCceEecC-CCC
Confidence            3567999999999999999999998854 457889988887521   1       000111222233332211100 000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      . ........+..  +...+++++||||||....  ....-..+........++-+++|+|+..+.+..       ....
T Consensus       166 ~-P~~i~~~al~~--~~~~~~DvVIIDTaGr~~~--d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~-------~~a~  233 (428)
T TIGR00959       166 S-PVEIARRALEY--AKENGFDVVIVDTAGRLQI--DEELMEELAAIKEILNPDEILLVVDAMTGQDAV-------NTAK  233 (428)
T ss_pred             C-HHHHHHHHHHH--HHhcCCCEEEEeCCCcccc--CHHHHHHHHHHHHhhCCceEEEEEeccchHHHH-------HHHH
Confidence            0 00011111112  2356789999999997542  122222333333334578899999986432111       1111


Q ss_pred             HHh-hccCCeEEEEecCCCCC
Q 014354          226 ILY-KTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       226 ~l~-~~~~P~IlVlNKiDl~~  245 (426)
                      ... ..+ ..=+|+||+|...
T Consensus       234 ~f~~~v~-i~giIlTKlD~~~  253 (428)
T TIGR00959       234 TFNERLG-LTGVVLTKLDGDA  253 (428)
T ss_pred             HHHhhCC-CCEEEEeCccCcc
Confidence            111 222 3467899999554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=1.1e-08  Score=94.82  Aligned_cols=117  Identities=11%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             cCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc-----------------------ccc
Q 014354           57 LAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLP  113 (426)
Q Consensus        57 ~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~-----------------------~~~  113 (426)
                      .+..+++....++..|+|+|++||||||||++|.+...+..+.+.+-+.++.-.                       ...
T Consensus        18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~s   97 (258)
T COG3638          18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLS   97 (258)
T ss_pred             eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccH
Confidence            346677777889999999999999999999999997766666665555442100                       000


Q ss_pred             cccccc------------------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          114 FAANID------------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       114 ~~t~i~------------------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .-+|+-                  ..+....=+.++++|+....-.-+  +.||+|++|++++|+++..++++++-|.|=
T Consensus        98 v~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--~~LSGGQQQRVaIARaL~Q~pkiILADEPv  175 (258)
T COG3638          98 VLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--STLSGGQQQRVAIARALVQQPKIILADEPV  175 (258)
T ss_pred             HHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--ccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence            000000                  111222234577787776543333  368999999999999999999999999994

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.86  E-value=4.1e-08  Score=98.41  Aligned_cols=153  Identities=14%  Similarity=0.209  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+|+|++||||||++.+|.......+.++.++..|+.-.    +.    ..  ......+..+     ..+.... 
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri----aA----vE--QLk~yae~lg-----ipv~v~~-  303 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI----GT----VQ--QLQDYVKTIG-----FEVIAVR-  303 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch----HH----HH--HHHHHhhhcC-----CcEEecC-
Confidence            4578999999999999999999998777777888887775210    00    00  0111111222     1111000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      -...+...+..+.. ..+++++||||||....  ....-..+.+.+....++.+++|+|+.......      ..+...+
T Consensus       304 d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~------~~i~~~F  374 (436)
T PRK11889        304 DEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDM------IEIITNF  374 (436)
T ss_pred             CHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccChHHH------HHHHHHh
Confidence            01122221111110 12589999999998542  122223344444445578889999986433221      1222222


Q ss_pred             hhccCCeEEEEecCCCCCh
Q 014354          228 YKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~  246 (426)
                      ... -..=+|++|.|-...
T Consensus       375 ~~~-~idglI~TKLDET~k  392 (436)
T PRK11889        375 KDI-HIDGIVFTKFDETAS  392 (436)
T ss_pred             cCC-CCCEEEEEcccCCCC
Confidence            222 245789999998764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=4.4e-09  Score=93.77  Aligned_cols=162  Identities=19%  Similarity=0.263  Sum_probs=98.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+-..|+++|--||||||+|.+|-.....              ...|   +++                    .-+-+.
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v--------------ttvP---TiG--------------------fnVE~v   56 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV--------------TTVP---TIG--------------------FNVETV   56 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcc--------------cCCC---ccc--------------------cceeEE
Confidence            445678999999999999999998766532              1122   110                    001111


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      .                .++..+.+||.-|+....       .+.. ++  ...+.+|||||+.....-..   ......
T Consensus        57 ~----------------ykn~~f~vWDvGGq~k~R-------~lW~~Y~--~~t~~lIfVvDS~Dr~Ri~e---ak~eL~  108 (181)
T KOG0070|consen   57 E----------------YKNISFTVWDVGGQEKLR-------PLWKHYF--QNTQGLIFVVDSSDRERIEE---AKEELH  108 (181)
T ss_pred             E----------------EcceEEEEEecCCCcccc-------cchhhhc--cCCcEEEEEEeCCcHHHHHH---HHHHHH
Confidence            1                245789999999996642       1111 22  23589999999975332211   111222


Q ss_pred             HHHhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          225 SILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       225 ~~l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      ..+..   ...|+++..||.|+...-...++.+.+. +.. +              ..  ..|    -+-.++|.+|.|+
T Consensus       109 ~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~-l~~-l--------------~~--~~w----~iq~~~a~~G~GL  166 (181)
T KOG0070|consen  109 RMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG-LHS-L--------------RS--RNW----HIQSTCAISGEGL  166 (181)
T ss_pred             HHHcCcccCCceEEEEechhhccccCCHHHHHhHhh-hhc-c--------------CC--CCc----EEeeccccccccH
Confidence            22332   3689999999999987654444433332 000 0              00  123    3788999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      .+-++++...+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.85  E-value=3.7e-08  Score=88.01  Aligned_cols=110  Identities=16%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccccc----------cc------
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----------ID------  119 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~----------i~------  119 (426)
                      .....+.+|+|+|++|||||||+|.|.|-..+..+.+.|.+.|-+        |+.+-+..|          ++      
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~   99 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG   99 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence            345677899999999999999999999999999999999887721        221111111          11      


Q ss_pred             ----hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          120 ----IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       120 ----~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                          -.++.+++.+..++|+.....-..  ..+|+|.+|++.+++++..+..+.++|.|=
T Consensus       100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR~~PilLLDEPF  157 (231)
T COG3840         100 LKLNAEQREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVREQPILLLDEPF  157 (231)
T ss_pred             cccCHHHHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhccCCeEEecCch
Confidence                123345566677777664433333  258999999999999999999999999993

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.85  E-value=2.6e-08  Score=95.92  Aligned_cols=147  Identities=19%  Similarity=0.195  Sum_probs=97.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccc---------------------cccccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------------TLPFAA-  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~---------------------~~~~~t-  116 (426)
                      ..+.+.....+.+.+|+|.+|||||||+++|-+...+..+.+.+.+.|..-.                     -+|+-+ 
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV  123 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV  123 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence            5677778889999999999999999999999999999999998887773211                     111111 


Q ss_pred             --ccc-------h---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccccchh
Q 014354          117 --NID-------I---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWS  183 (426)
Q Consensus       117 --~i~-------~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~~~~~  183 (426)
                        |+.       +   ...-+..++++.+||..-..-..  +.||+||+|++.+|+++..+++++++|.| .-.+|.-+.
T Consensus       124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence              000       0   01113345666777664433322  46999999999999999999999999999 334443344


Q ss_pred             chHHHHHHHHHhcCCcEEEEEEeC
Q 014354          184 ASGAIITEAFASTFPTVVTYVVDT  207 (426)
Q Consensus       184 ~~~~~l~~~~~~~~~d~vl~VVDa  207 (426)
                      .+...+.+..+...-.++..-.|.
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDL  225 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDL  225 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCH
Confidence            445555555444333444444444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.83  E-value=1.3e-07  Score=85.25  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc--cc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN--LF  148 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~--~l  148 (426)
                      +++++|+||+||||+...+.......+.++.++..|+.-..          .......+.+..++.    +.....  ..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~----------~~~~l~~~~~~~~~~----~~~~~~~~~~   67 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA----------AIEQLRVLGEQVGVP----VFEEGEGKDP   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH----------HHHHHHHhcccCCeE----EEecCCCCCH
Confidence            58999999999999999999877666778888887752110          000011111122211    111000  00


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .....+.+..  ....+++++|+||||.....  ...-..+........++.+++|+++........      ....+..
T Consensus        68 ~~~~~~~~~~--~~~~~~d~viiDt~g~~~~~--~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~------~~~~~~~  137 (173)
T cd03115          68 VSIAKRAIEH--AREENFDVVIVDTAGRLQID--ENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN------QAKAFNE  137 (173)
T ss_pred             HHHHHHHHHH--HHhCCCCEEEEECcccchhh--HHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH------HHHHHHh
Confidence            1111111111  23567899999999985421  111111222222234789999999853322111      1122222


Q ss_pred             hccCCeEEEEecCCCCChH
Q 014354          229 KTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~  247 (426)
                      ..+ ..-+|+||+|.....
T Consensus       138 ~~~-~~~viltk~D~~~~~  155 (173)
T cd03115         138 ALG-ITGVILTKLDGDARG  155 (173)
T ss_pred             hCC-CCEEEEECCcCCCCc
Confidence            334 467889999987653

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.82  E-value=5e-09  Score=90.45  Aligned_cols=110  Identities=20%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chh---hhHHHH
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIR---DTIRYK  127 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r---~~~~~~  127 (426)
                      ...++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..          +..+++...+    .++   ...++.
T Consensus         7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~   86 (137)
T PF00005_consen    7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE   86 (137)
T ss_dssp             EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred             EEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34567899999999999999999999998877777666543311          1111111110    012   222566


Q ss_pred             HHHHHcCCCCC--CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          128 EVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       128 ~~~~~~~l~~n--g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      ++++.+++...  ..+-.....||++.++++.++.++..+++++|+|.|
T Consensus        87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP  135 (137)
T PF00005_consen   87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP  135 (137)
T ss_dssp             HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            77888886652  122222256999999999999999999999999998

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.82  E-value=5e-08  Score=94.47  Aligned_cols=129  Identities=17%  Similarity=0.149  Sum_probs=87.0

Q ss_pred             hhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------
Q 014354           37 EKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------  108 (426)
Q Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------  108 (426)
                      ....+...++...+        ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..        
T Consensus        26 ~~~~~~~~~~~~~i--------l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~   97 (269)
T cd03294          26 SKEEILKKTGQTVG--------VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR   97 (269)
T ss_pred             hhhhhhhhcCCceE--------eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhh
Confidence            44566666665544        56677777888999999999999999999999998777776665442210        


Q ss_pred             ------cccccccccc----chhh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHH
Q 014354          109 ------VMTLPFAANI----DIRD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERR  162 (426)
Q Consensus       109 ------v~~~~~~t~i----~~r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~  162 (426)
                            +...++...+    .+.+                ...+.++++.+++.+..  -.....+|+|+++++.+++++
T Consensus        98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294          98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE--HKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCCcccCCHHHHHHHHHHHHH
Confidence                  1111111100    0111                11245567788875421  122235899999999999999


Q ss_pred             hcCCCEEEEcCCC
Q 014354          163 ADHLDYVLVDTPG  175 (426)
Q Consensus       163 ~~~~~~~liDTPG  175 (426)
                      ..+++++|+|.|=
T Consensus       176 ~~~p~illLDEPt  188 (269)
T cd03294         176 AVDPDILLMDEAF  188 (269)
T ss_pred             hcCCCEEEEcCCC
Confidence            9999999999993

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.81  E-value=5.3e-08  Score=90.80  Aligned_cols=115  Identities=13%  Similarity=0.102  Sum_probs=78.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccccc----chhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAANI----DIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t~i----~~r~----  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.        .+...++...+    .+++    
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~   95 (213)
T cd03259          16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAF   95 (213)
T ss_pred             ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHh
Confidence            4556666778889999999999999999999998877777766544321        01111211100    0111    


Q ss_pred             ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                  ...+.++++.+++.....  .....+|+|+++++.+++++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259          96 GLKLRGVPKAEIRARVRELLELVGLEGLLN--RYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                        112345677888754211  222458999999999999999999999999993

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=9e-09  Score=105.99  Aligned_cols=135  Identities=17%  Similarity=0.156  Sum_probs=87.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC-CCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n-g~i~~~~  145 (426)
                      .+...|+|+-+-.||||||-++++....-......+.+.+......+               .-++.|+... ++..+. 
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~---------------~er~rgITiqSAAt~~~-  100 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSME---------------LERQRGITIQSAATYFT-  100 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHH---------------HHHhcCceeeeceeeee-
Confidence            46678999999999999999999876432222111111111111111               1122333222 223332 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                       +..+.+.+||||||.++.  -...+    .+  .-.|-+|+|+|+..+...++     ....+
T Consensus       101 -----------------w~~~~iNiIDTPGHvDFT--~EVeR----AL--rVlDGaVlvl~aV~GVqsQt-----~tV~r  150 (721)
T KOG0465|consen  101 -----------------WRDYRINIIDTPGHVDFT--FEVER----AL--RVLDGAVLVLDAVAGVESQT-----ETVWR  150 (721)
T ss_pred             -----------------eccceeEEecCCCceeEE--EEehh----hh--hhccCeEEEEEcccceehhh-----HHHHH
Confidence                             456899999999999972  11111    11  12488999999999998887     45677


Q ss_pred             HHhhccCCeEEEEecCCCCChH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~  247 (426)
                      .+.+.++|.|..+||+|+....
T Consensus       151 Q~~ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  151 QMKRYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             HHHhcCCCeEEEEehhhhcCCC
Confidence            8899999999999999998753

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.79  E-value=4.7e-08  Score=96.27  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...++...+    .+++   
T Consensus         9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   88 (302)
T TIGR01188         9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE   88 (302)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHH
Confidence            44566667788999999999999999999999998888777776554321         1222222111    0111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ..++.++++.+++....  -.....||+|+++++.++.++..+++++|+|.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP  151 (302)
T TIGR01188        89 MMGRLYGLPKDEAEERAEELLELFELGEAA--DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP  151 (302)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhHh--CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                         11345678888886421  222346899999999999999999999999999

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.79  E-value=5.3e-08  Score=88.51  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhH-HHHHHHHHcCCCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYKEVMKQFNLGP  137 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~-~~~~~~~~~~l~~  137 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..  .....   ..+..+ .+-++++.+++..
T Consensus        15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~--~~~~~---~~~~~i~~~~q~l~~~gl~~   89 (180)
T cd03214          15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA--SLSPK---ELARKIAYVPQALELLGLAH   89 (180)
T ss_pred             EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC--cCCHH---HHHHHHhHHHHHHHHcCCHh
Confidence            34455666788899999999999999999999998888887776543321  11000   011111 1223667777654


Q ss_pred             CCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          138 NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       138 ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .  +-.....+|+|+++++.+++++..+++++++|.|
T Consensus        90 ~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  124 (180)
T cd03214          90 L--ADRPFNELSGGERQRVLLARALAQEPPILLLDEP  124 (180)
T ss_pred             H--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            2  1122345899999999999999999999999999

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.79  E-value=6.3e-08  Score=90.78  Aligned_cols=115  Identities=15%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccc-------c---ccchh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFA-------A---NIDIR--  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~-------t---~i~~r--  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.     .+...++.       +   ++...  
T Consensus        20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~   99 (220)
T cd03293          20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLE   99 (220)
T ss_pred             EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHH
Confidence            3455566678889999999999999999999999877777666543221     11111111       1   11110  


Q ss_pred             --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ....+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  159 (220)
T cd03293         100 LQGVPKAEARERAEELLELVGLSGFE--NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF  159 (220)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence                    011245567888875421  1222458999999999999999999999999993

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.79  E-value=3.8e-08  Score=93.60  Aligned_cols=115  Identities=12%  Similarity=0.139  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------ccccccccc----cchh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAAN----IDIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~----i~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +..+++...    ..+.
T Consensus        18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   97 (243)
T TIGR02315        18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVL   97 (243)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHH
Confidence            45566667788899999999999999999999998777776665443210             111111110    0011


Q ss_pred             h------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                        ..++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315        98 ENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA--YQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             HHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh--cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            1                        11234567777765321  1223458999999999999999999999999993

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.79  E-value=1.8e-08  Score=94.05  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=86.1

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC--------------------ccccccccccc
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--------------------PAVMTLPFAAN  117 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d--------------------~~v~~~~~~t~  117 (426)
                      ..++++....++.+++|+|.+|||||||.+.|+|...+..+.+.+.+..                    |..+--|..+ 
T Consensus        22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t-  100 (252)
T COG1124          22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT-  100 (252)
T ss_pred             hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh-
Confidence            3677788888999999999999999999999999999988888776632                    2222222221 


Q ss_pred             cc--hhhhH----------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          118 ID--IRDTI----------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       118 i~--~r~~~----------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +.  +.+..          +..++++.+|+.+.---.. -..||+|++|++++++|+.-+++++|.|.|=
T Consensus       101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt  169 (252)
T COG1124         101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-PHELSGGQRQRIAIARALIPEPKLLILDEPT  169 (252)
T ss_pred             HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-chhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence            10  11111          2567889999887422222 2348999999999999999999999999995

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.78  E-value=7.4e-08  Score=91.24  Aligned_cols=115  Identities=16%  Similarity=0.107  Sum_probs=78.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +..+++...+    .+.
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   95 (235)
T cd03261          16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF   95 (235)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence            44556667788899999999999999999999998777777665443210             1111111100    001


Q ss_pred             h-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                 ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt  164 (235)
T cd03261          96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE--DLYPAELSGGMKKRVALARALALDPELLLYDEPT  164 (235)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            1                 11234567788875422  2223468999999999999999999999999993

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.78  E-value=7.5e-08  Score=89.24  Aligned_cols=115  Identities=14%  Similarity=0.085  Sum_probs=79.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------cccccccccc--c---chhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAAN--I---DIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~~~~~~t~--i---~~r~----  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.       .+...++...  +   .+++    
T Consensus        16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~   95 (205)
T cd03226          16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL   95 (205)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhh
Confidence            4455566678889999999999999999999999877777666544331       1111111110  0   0111    


Q ss_pred             --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ..++.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  154 (205)
T cd03226          96 GLKELDAGNEQAETVLKDLDLYALK--ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT  154 (205)
T ss_pred             hhhhcCccHHHHHHHHHHcCCchhc--CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence                    12345678888876432  2223468999999999999999999999999994

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.78  E-value=2.3e-08  Score=98.69  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~~--  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.++.         +...|+...+    ..++.  
T Consensus        23 l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~  102 (306)
T PRK13537         23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLL  102 (306)
T ss_pred             EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHH
Confidence            56677777888999999999999999999999998888888777655421         1111211111    01111  


Q ss_pred             --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                    .++.++++.+++....  -...+.||+|+++++.++.++..+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt  166 (306)
T PRK13537        103 VFGRYFGLSAAAARALVPPLLEFAKLENKA--DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT  166 (306)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchHh--cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence                          1234667788876422  2223469999999999999999999999999993

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.78  E-value=6.8e-08  Score=97.86  Aligned_cols=130  Identities=17%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc----Cc---
Q 014354           35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL----DP---  107 (426)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~----d~---  107 (426)
                      +.-++++.+.++....        ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.    +.   
T Consensus        24 g~~~~~~~~~~g~~~~--------l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~   95 (382)
T TIGR03415        24 GKTREEILDETGLVVG--------VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC   95 (382)
T ss_pred             CCCHHHHHHhhCCEEE--------EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC
Confidence            3345556666665544        56677778889999999999999999999999998888888877542    10   


Q ss_pred             -----------ccccccccccc----chhh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHH
Q 014354          108 -----------AVMTLPFAANI----DIRD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVI  156 (426)
Q Consensus       108 -----------~v~~~~~~t~i----~~r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~  156 (426)
                                 .+...++...+    .+.+                ..++.++++.+++.....  .....||+|+++++
T Consensus        96 ~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~--~~~~~LSgGq~QRV  173 (382)
T TIGR03415        96 DAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD--KKPGELSGGMQQRV  173 (382)
T ss_pred             CHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHH
Confidence                       01111111110    0111                123456788888864322  22345899999999


Q ss_pred             HHHHHHhcCCCEEEEcCC
Q 014354          157 SLIERRADHLDYVLVDTP  174 (426)
Q Consensus       157 ~~~~~~~~~~~~~liDTP  174 (426)
                      .+++++..+++++|+|.|
T Consensus       174 ~LARALa~~P~ILLlDEP  191 (382)
T TIGR03415       174 GLARAFAMDADILLMDEP  191 (382)
T ss_pred             HHHHHHhcCCCEEEEECC
Confidence            999999999999999999

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.2e-07  Score=96.67  Aligned_cols=146  Identities=20%  Similarity=0.273  Sum_probs=92.9

Q ss_pred             CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcc
Q 014354           63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL  142 (426)
Q Consensus        63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~  142 (426)
                      +...+++++|+|+||||+|||||+..|+......           .+..        +                  .|.+
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~-----------ti~~--------i------------------~GPi  105 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-----------TIDE--------I------------------RGPI  105 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh-----------hhhc--------c------------------CCce
Confidence            3445677888899999999999999999875321           0100        0                  1212


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      +-.   +             ++...+.|+++|.  +.       ..+++..+  .+|+|+++||+..|+.-.+     +.
T Consensus       106 Tvv---s-------------gK~RRiTflEcp~--Dl-------~~miDvaK--IaDLVlLlIdgnfGfEMET-----mE  153 (1077)
T COG5192         106 TVV---S-------------GKTRRITFLECPS--DL-------HQMIDVAK--IADLVLLLIDGNFGFEMET-----ME  153 (1077)
T ss_pred             EEe---e-------------cceeEEEEEeChH--HH-------HHHHhHHH--hhheeEEEeccccCceehH-----HH
Confidence            110   1             3456889999993  22       13333332  3599999999998887765     44


Q ss_pred             HHHHHhhccCCeEE-EEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          223 ACSILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       223 ~~~~l~~~~~P~Il-VlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      .+.++...+.|-|+ |++..|+.+... +......++                    ...+.+.|..+..|.+|...
T Consensus       154 FLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlk--------------------hRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         154 FLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLK--------------------HRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             HHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHh--------------------hhHHHHHcCCceEEEecccc
Confidence            56677788999877 899999987642 222222222                    22344556667777777654

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.77  E-value=8.1e-08  Score=90.05  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...++...+    .+++   
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   95 (220)
T cd03265          16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLY   95 (220)
T ss_pred             eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHH
Confidence            44566667788899999999999999999999987777666655442210         1111111100    0011   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                   ..++.++++.+++...  .-.....||+|+++++.++.++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt  159 (220)
T cd03265          96 IHARLYGVPGAERRERIDELLDFVGLLEA--ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT  159 (220)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                         1134566788887542  11223468999999999999999999999999993

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.77  E-value=3.9e-08  Score=91.12  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------ccccccccccccc----hhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----------PAVMTLPFAANID----IRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----------~~v~~~~~~t~i~----~r~~  123 (426)
                      ...++....++.+++|+|++||||||||++|.|......+.+...+.|           .++...|.+..+.    +.++
T Consensus        19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN   98 (237)
T COG0410          19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEEN   98 (237)
T ss_pred             EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence            667778888999999999999999999999999998888888777666           1344455554331    0110


Q ss_pred             H--------------H-HHHHHHHcC-CCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          124 I--------------R-YKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       124 ~--------------~-~~~~~~~~~-l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                      .              . .+++.+.|- +.+.....  ...+|+|.+|.+.+++++...++++++|.|..
T Consensus        99 L~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~--aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~  165 (237)
T COG0410          99 LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR--AGTLSGGEQQMLAIARALMSRPKLLLLDEPSE  165 (237)
T ss_pred             HhhhhhcccccccccccHHHHHHHChhHHHHhcCc--ccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence            0              0 222222111 00000000  11379999999999999999999999999954

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=4.7e-08  Score=102.90  Aligned_cols=130  Identities=20%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc-ccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t-~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .....++|+.+...|||||...|+.+.--.+.            ...+.- -.|.|+--.            ..||.-..
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~------------rlagkirfld~redeq------------~rgitmks   62 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISS------------RLAGKIRFLDTREDEQ------------TRGITMKS   62 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEech------------hhccceeeccccchhh------------hhceeeec
Confidence            35678999999999999999999987532211            111100 001111100            02333221


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      +.+|           -+.+++-+.|||+|||.+|...      +.  .++.++|.++++||+-+|...++.     ..++
T Consensus        63 s~is-----------~~~~~~~~nlidspghvdf~se------vs--sas~l~d~alvlvdvvegv~~qt~-----~vlr  118 (887)
T KOG0467|consen   63 SAIS-----------LLHKDYLINLIDSPGHVDFSSE------VS--SASRLSDGALVLVDVVEGVCSQTY-----AVLR  118 (887)
T ss_pred             cccc-----------cccCceEEEEecCCCccchhhh------hh--hhhhhcCCcEEEEeeccccchhHH-----HHHH
Confidence            1111           1247789999999999998321      11  123568999999999999998873     3444


Q ss_pred             HHhhccCCeEEEEecCCCC
Q 014354          226 ILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~  244 (426)
                      .....+...++|+||||+.
T Consensus       119 q~~~~~~~~~lvinkidrl  137 (887)
T KOG0467|consen  119 QAWIEGLKPILVINKIDRL  137 (887)
T ss_pred             HHHHccCceEEEEehhhhH
Confidence            4445577889999999943

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.77  E-value=2e-08  Score=102.36  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----------  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----------  118 (426)
                      ..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+..          +...++...+          
T Consensus        19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v   98 (402)
T PRK09536         19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV   98 (402)
T ss_pred             EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence            45566677888999999999999999999999988777776666553311          1111111110          


Q ss_pred             -----------c---hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 -----------D---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 -----------~---~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                 .   ..+..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|=
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~--~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt  167 (402)
T PRK09536         99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD--RPVTSLSGGERQRVLLARALAQATPVLLLDEPT  167 (402)
T ss_pred             HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence                       0   012224567788888864322  223468999999999999999999999999993

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.77  E-value=3.8e-08  Score=91.78  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=78.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccc---------cc---ccch-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPF---------AA---NIDI-  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~---------~t---~i~~-  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.     .+...++         .+   ++.. 
T Consensus        15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~   94 (213)
T cd03235          15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG   94 (213)
T ss_pred             eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence            4556666778889999999999999999999999877766665543221     0111110         01   1100 


Q ss_pred             -------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 -------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                   .....+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  160 (213)
T cd03235          95 LYGHKGLFRRLSKADKAKVDEALERVGLSELA--DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF  160 (213)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCHHHH--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                         0112345677788775321  1223468999999999999999999999999993

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.77  E-value=6.3e-09  Score=101.54  Aligned_cols=210  Identities=15%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHH-----HH-HHHcCCCCCCCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK-----EV-MKQFNLGPNGGIL  142 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~-----~~-~~~~~l~~ng~i~  142 (426)
                      ..+|+++|...+||||||..|++.....++-.+-..+              .|+.+.++     .+ -..+|++..|.++
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkL--------------FRHKHEiESGRTSSVGNDILGFD~~GNvV  198 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKL--------------FRHKHEIESGRTSSVGNDILGFDVHGNVV  198 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHH--------------hhhhhhcccCccccccccceeeccccccc
Confidence            4589999999999999999998876554321100000              01110000     00 0134444445555


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       143 ~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      ..-..-...++| +.+++.  .-.-+.|||.+|++.+......+      ...+.+|..+++|-+..++-..+     ..
T Consensus       199 NKPD~Hg~~LdW-vkIce~--saKviTFIDLAGHEkYLKTTvFG------MTGH~PDf~MLMiGaNaGIiGmT-----KE  264 (641)
T KOG0463|consen  199 NKPDPHGHNLDW-VKICED--SAKVITFIDLAGHEKYLKTTVFG------MTGHMPDFTMLMIGANAGIIGMT-----KE  264 (641)
T ss_pred             cCCCCCCCcccc-eeeccc--cceeEEEEeccchhhhhheeeec------cccCCCCceEEEecccccceecc-----HH
Confidence            432222334444 222221  11246799999998763211111      13466899999999887765544     23


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh---hhh--cCCceEEeeccc
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD---EFY--KNLKSVGVSSVS  297 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~--~~~~vv~vSA~~  297 (426)
                      .+.+....++|+++|++|||+.....+.+.++.+..|+..-.+.+  ..-+.+++-.+..   .|.  ...|+|.||-.+
T Consensus       265 HLgLALaL~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK--~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVt  342 (641)
T KOG0463|consen  265 HLGLALALHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRK--LPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVT  342 (641)
T ss_pred             hhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCccc--CcEEEecccceEEeeccCccccccceEEecccc
Confidence            455666789999999999999998766666665554443211110  1112222221111   111  125899999999


Q ss_pred             CCCHHHHHHHH
Q 014354          298 GAGIEAYFKAV  308 (426)
Q Consensus       298 g~gv~~l~~~l  308 (426)
                      |+++.-|...|
T Consensus       343 G~NL~LLkmFL  353 (641)
T KOG0463|consen  343 GTNLPLLKMFL  353 (641)
T ss_pred             CCChHHHHHHH
Confidence            99998765544

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.77  E-value=7.7e-08  Score=90.17  Aligned_cols=114  Identities=16%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++...+    .+
T Consensus        21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  100 (221)
T TIGR02211        21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTA  100 (221)
T ss_pred             EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcH
Confidence            44555667788899999999999999999999998777776665443210              1111111100    01


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      ++                ...+.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       101 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~illlDEP  168 (221)
T TIGR02211       101 LENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN--HRPSELSGGERQRVAIARALVNQPSLVLADEP  168 (221)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            11                112345678888764321  22346999999999999999999999999999

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=6.9e-08  Score=98.44  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.              .+...++...+    .+
T Consensus        44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv  123 (400)
T PRK10070         44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV  123 (400)
T ss_pred             EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCH
Confidence            5666777788999999999999999999999999888877776654331              11111111110    01


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+                ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       124 ~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~--~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt  192 (400)
T PRK10070        124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAH--SYPDELSGGMRQRVGLARALAINPDILLMDEAF  192 (400)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh--cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            11                113456788888864322  223468999999999999999999999999993

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.77  E-value=6.7e-08  Score=96.72  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=81.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|.+...+..+.+.+.+.+..             +...++..++    .+.
T Consensus        21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~  100 (343)
T TIGR02314        21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVF  100 (343)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHH
Confidence            55666677788999999999999999999999998888887777654321             1111111111    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ..++.++++.+++.....  ...+.||+|+++++.+++++..+++++|+|.|=
T Consensus       101 eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~--~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt  168 (343)
T TIGR02314       101 GNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            1                112456788888865322  223469999999999999999999999999993

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=7.2e-08  Score=92.67  Aligned_cols=115  Identities=12%  Similarity=0.071  Sum_probs=78.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----ccccccc-------c---ccch--h
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFA-------A---NIDI--R  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~-------t---~i~~--r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..     +...++.       +   ++..  +
T Consensus        17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~   96 (255)
T PRK11248         17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQ   96 (255)
T ss_pred             EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHH
Confidence            44556667788999999999999999999999998777777665432210     1111111       1   1110  0


Q ss_pred             --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ...++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  156 (255)
T PRK11248         97 LAGVEKMQRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF  156 (255)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                    012345678888875421  1223468999999999999999999999999994

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.76  E-value=7e-08  Score=90.24  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++...+    .+
T Consensus        20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   99 (218)
T cd03255          20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTA   99 (218)
T ss_pred             EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcH
Confidence            44556667788899999999999999999999998777777665443210              1111111100    00


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++                ...+.++++.+++.+...  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~  168 (218)
T cd03255         100 LENVELPLLLAGVPKKERRERAEELLERVGLGDRLN--HYPSELSGGQQQRVAIARALANDPKIILADEPT  168 (218)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh--cChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence            11                113456788888764321  223458999999999999999999999999994

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.76  E-value=1.9e-07  Score=93.43  Aligned_cols=153  Identities=16%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+++|+|++||||||++.+|.......+.++.++..|+.-.    +.    ...  ....-+.+++.    +..  
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~----gA----veQ--Lk~yae~lgvp----v~~--  266 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS----GA----VEQ--FQGYADKLDVE----LIV--  266 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc----cH----HHH--HHHHhhcCCCC----EEe--
Confidence            346789999999999999999999987766778898888875311    10    000  00011111110    111  


Q ss_pred             ccccccHHHHHHHHHHHh--cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          146 NLFTTKFDEVISLIERRA--DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~--~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                         ...-..+...+....  .+++++||||||....  ....-..+........++.+++|+++..  ...+.    ..+
T Consensus       267 ---~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~--d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~----~~i  335 (407)
T PRK12726        267 ---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL--AEESVSEISAYTDVVHPDLTCFTFSSGM--KSADV----MTI  335 (407)
T ss_pred             ---cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc--CHHHHHHHHHHhhccCCceEEEECCCcc--cHHHH----HHH
Confidence               111112222222222  4689999999998542  1112222333333344677788887632  22221    111


Q ss_pred             HHHHhhccCCeEEEEecCCCCCh
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ..... .--+.-+|++|.|-...
T Consensus       336 ~~~f~-~l~i~glI~TKLDET~~  357 (407)
T PRK12726        336 LPKLA-EIPIDGFIITKMDETTR  357 (407)
T ss_pred             HHhcC-cCCCCEEEEEcccCCCC
Confidence            11111 12245788999997654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=7.8e-08  Score=94.06  Aligned_cols=117  Identities=15%  Similarity=0.074  Sum_probs=80.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---c--chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN---I--DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~---i--~~r  121 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..            +...++...   +  .++
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~  102 (287)
T PRK13637         23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIE  102 (287)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHH
Confidence            45566667788999999999999999999999998777777666543311            111122110   0  011


Q ss_pred             hh----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 DT----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~~----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +.                .++.++++.+++.+..-.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt  172 (287)
T PRK13637        103 KDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT  172 (287)
T ss_pred             HHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            11                1245678888886211112223469999999999999999999999999993

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.76  E-value=7.7e-08  Score=89.87  Aligned_cols=115  Identities=13%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .+.
T Consensus        19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   98 (216)
T TIGR00960        19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVY   98 (216)
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHH
Confidence            44555666788899999999999999999999998777777666443210             1111111110    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ..++.++++.+++.....  .....+|+|+++++.+++++..+++++|+|.|-
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrv~laral~~~p~llllDEPt  166 (216)
T TIGR00960        99 DNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH--ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT  166 (216)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            1                113455678888754321  222468999999999999999999999999994

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.76  E-value=7.9e-09  Score=93.20  Aligned_cols=118  Identities=17%  Similarity=0.202  Sum_probs=91.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec-cC-----------ccccccccccccc----h--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN-LD-----------PAVMTLPFAANID----I--  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~-~d-----------~~v~~~~~~t~i~----~--  120 (426)
                      .+..+.....+..=+||||+|||||||+..|+|...+..+.+++.+ .|           .++..+-+++.+-    +  
T Consensus        21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~e  100 (249)
T COG4674          21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRE  100 (249)
T ss_pred             eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHH
Confidence            6777777778888899999999999999999999999988888877 33           1233332332221    1  


Q ss_pred             ----------------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC--Cc
Q 014354          121 ----------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP--GQ  176 (426)
Q Consensus       121 ----------------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP--Gi  176 (426)
                                            ..+-++++++...++.+.......  ++|.|.+|++++..-+..+++++++|.|  |.
T Consensus       101 NLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGM  178 (249)
T COG4674         101 NLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM  178 (249)
T ss_pred             HHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh--hhccchhhhhhhheeeccCCcEEEecCccCCC
Confidence                                  122367889999999988776654  6899999999999989999999999999  66


Q ss_pred             cc
Q 014354          177 IE  178 (426)
Q Consensus       177 ~e  178 (426)
                      -+
T Consensus       179 Td  180 (249)
T COG4674         179 TD  180 (249)
T ss_pred             cH
Confidence            44

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.76  E-value=7.7e-08  Score=89.64  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=77.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r~----  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..        +...++...+    .+++    
T Consensus        16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~   95 (213)
T cd03301          16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAF   95 (213)
T ss_pred             eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHH
Confidence            44556666788899999999999999999999998777776665443210        1111111100    0111    


Q ss_pred             ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                  ...+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~laral~~~p~llllDEP  157 (213)
T cd03301          96 GLKLRKVPKDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP  157 (213)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCHHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                        1123456778877532  1222346899999999999999999999999999

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.75  E-value=3.1e-08  Score=99.14  Aligned_cols=115  Identities=12%  Similarity=0.163  Sum_probs=81.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.++.         +...|+...+    ...+   
T Consensus        57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~  136 (340)
T PRK13536         57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLL  136 (340)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHH
Confidence            56677777889999999999999999999999998888888777665421         1111111111    0111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                   ...+.++++.+++.....  .....||+|+++++.++.++..+++++|+|.|-
T Consensus       137 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~--~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt  200 (340)
T PRK13536        137 VFGRYFGMSTREIEAVIPSLLEFARLESKAD--ARVSDLSGGMKRRLTLARALINDPQLLILDEPT  200 (340)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchhhC--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence                         112345677788764222  122358999999999999999999999999993

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=9.6e-08  Score=90.38  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.              .+...++...+    .+
T Consensus        25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  104 (233)
T PRK11629         25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTA  104 (233)
T ss_pred             EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCH
Confidence            4455566778889999999999999999999999877777766654321              11111211110    11


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++                ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       105 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  173 (233)
T PRK11629        105 LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN--HRPSELSGGERQRVAIARALVNNPRLVLADEPT  173 (233)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            11                113456788888754221  223458999999999999999999999999993

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=1.1e-07  Score=81.25  Aligned_cols=119  Identities=17%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      ++..+.+||.-|+-...      .-..-++  +..+.++||||+.+.+.-..-.......+..-.-.+...++++||.|.
T Consensus        60 KNLk~~vwdLggqtSir------PyWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~  131 (182)
T KOG0072|consen   60 KNLKFQVWDLGGQTSIR------PYWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY  131 (182)
T ss_pred             ccccceeeEccCccccc------HHHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence            55788999999985541      1111122  345899999999876543221111111111111234556788999998


Q ss_pred             CChHhHHHHHHHHH--HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFE--VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .......+....+.  .|..                        .-..+|..||.+|+|++...+||.+.+.+
T Consensus       132 ~~~~t~~E~~~~L~l~~Lk~------------------------r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  132 SGALTRSEVLKMLGLQKLKD------------------------RIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             hhhhhHHHHHHHhChHHHhh------------------------heeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            77654433333222  1111                        12569999999999999999999987764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.75  E-value=7.4e-08  Score=97.06  Aligned_cols=119  Identities=15%  Similarity=0.151  Sum_probs=82.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccc-------c-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFA-------A-  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~-------t-  116 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..              +...++.       + 
T Consensus         9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV   88 (363)
T TIGR01186         9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTI   88 (363)
T ss_pred             EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCH
Confidence            44556667788999999999999999999999999888888877664321              1111111       1 


Q ss_pred             --ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354          117 --NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI  179 (426)
Q Consensus       117 --~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~  179 (426)
                        ++..  +        ...++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.| +-.++
T Consensus        89 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~--~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~  162 (363)
T TIGR01186        89 LQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH--RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP  162 (363)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence              1110  0        0123456788888854222  22345899999999999999999999999999 33444

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.74  E-value=1.3e-07  Score=89.86  Aligned_cols=114  Identities=11%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------ccccccccc----cchh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAAN----IDIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~----i~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...    ..++
T Consensus        17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   96 (241)
T cd03256          17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVL   96 (241)
T ss_pred             EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHH
Confidence            45556667788899999999999999999999988777776665443211             111111110    0011


Q ss_pred             h------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 D------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ~------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +                        ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  171 (241)
T cd03256          97 ENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEP  171 (241)
T ss_pred             HHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh--CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            1                        11234567777775321  122345899999999999999999999999999

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.74  E-value=2e-08  Score=95.01  Aligned_cols=172  Identities=17%  Similarity=0.131  Sum_probs=102.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+.+.+++.|.+|+|||+|||.+++......          +....++.|                      .++-+. 
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------t~k~K~g~T----------------------q~in~f-  179 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------TSKSKNGKT----------------------QAINHF-  179 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhh----------hcCCCCccc----------------------eeeeee-
Confidence            44567899999999999999999998864321          111122222                      112111 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                                       .-+-.|.++|.||.....+.    ...+.....++.. ...-.+.++||+.-++.+.+     
T Consensus       180 -----------------~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-----  237 (320)
T KOG2486|consen  180 -----------------HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-----  237 (320)
T ss_pred             -----------------eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-----
Confidence                             22358999999995433111    1122333333322 22346778899999998877     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHH-HHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEV-FQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      ..++..+.+.++|+.+|+||||....-.  ..+-...++. |+..           .+.      -|....|-+.+|+.+
T Consensus       238 ~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l-----------~~~------~f~~~~Pw~~~Ssvt  300 (320)
T KOG2486|consen  238 NPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL-----------IRG------VFLVDLPWIYVSSVT  300 (320)
T ss_pred             hHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc-----------ccc------ceeccCCceeeeccc
Confidence            4456667889999999999999876532  1111111110 1110           111      112234567899999


Q ss_pred             CCCHHHHHHHHH
Q 014354          298 GAGIEAYFKAVE  309 (426)
Q Consensus       298 g~gv~~l~~~l~  309 (426)
                      +-|++.|+-.+.
T Consensus       301 ~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  301 SLGRDLLLLHIA  312 (320)
T ss_pred             ccCceeeeeehh
Confidence            999998865544

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.74  E-value=9.4e-08  Score=89.51  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..         +...++...+    .+++   
T Consensus        18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~   97 (220)
T cd03263          18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLR   97 (220)
T ss_pred             ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHH
Confidence            44556666788899999999999999999999998777776665443210         1111111100    0111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ..++.++++.+++...  .-.....||+|+++++.+++++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  160 (220)
T cd03263          98 FYARLKGLPKSEIKEEVELLLRVLGLTDK--ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP  160 (220)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence                         1124566778887532  1222346899999999999999999999999999

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.74  E-value=9e-08  Score=92.11  Aligned_cols=115  Identities=12%  Similarity=0.038  Sum_probs=78.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccc-------c---ccch--h
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFA-------A---NIDI--R  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~-------t---~i~~--r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.     .+...++.       +   ++..  .
T Consensus        28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  107 (257)
T PRK11247         28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLK  107 (257)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhccc
Confidence            4556666778889999999999999999999999877766665422110     01111111       1   1110  0


Q ss_pred             --hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 --DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 --~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        ...++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       108 ~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247        108 GQWRDAALQALAAVGLADRA--NEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             chHHHHHHHHHHHcCChhHh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              112345678888876421  1223468999999999999999999999999993

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.74  E-value=6.8e-08  Score=91.31  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .+.
T Consensus        21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~  100 (233)
T cd03258          21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVF  100 (233)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHH
Confidence            44556667788899999999999999999999998887777766544311             1111111100    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ...+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus       101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~  168 (233)
T cd03258         101 ENVALPLEIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT  168 (233)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh--hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            1                1123456778877542  12233468999999999999999999999999993

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.74  E-value=1.3e-07  Score=90.53  Aligned_cols=106  Identities=18%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccc----cchhhh------------HHHHHH
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN----IDIRDT------------IRYKEV  129 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~----i~~r~~------------~~~~~~  129 (426)
                      ..++.+++|+|++|||||||++.|+|...+..+.+.+.+..  +...++...    ..+.+.            ....++
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~--i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~   99 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT--VSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI   99 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce--EEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence            34678999999999999999999999987776666543321  111111110    001111            123556


Q ss_pred             HHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       130 ~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++.+++...  .-.....||+|+++++.++.++..+++++|+|.|=
T Consensus       100 l~~l~l~~~--~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt  143 (246)
T cd03237         100 AKPLQIEQI--LDREVPELSGGELQRVAIAACLSKDADIYLLDEPS  143 (246)
T ss_pred             HHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            777776532  11223458999999999999999999999999993

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.74  E-value=7.3e-07  Score=89.64  Aligned_cols=157  Identities=23%  Similarity=0.261  Sum_probs=92.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+++.+|.++|--||||||..-.|.......++++.++..|..   .| ++      .-.++.+-++.+..-.+- -.. 
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~---Rp-AA------~eQL~~La~q~~v~~f~~-~~~-  164 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTY---RP-AA------IEQLKQLAEQVGVPFFGS-GTE-  164 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccC---Ch-HH------HHHHHHHHHHcCCceecC-CCC-
Confidence            5577899999999999999999999998888999999877731   11 10      011122233333221110 000 


Q ss_pred             ccccccHH-HHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFD-EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~-~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                         .+-.+ -...+..+....++++||||+|-...  ...+-..+.+......+|-+++|+|+.-|-+.....      -
T Consensus       165 ---~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i--de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A------~  233 (451)
T COG0541         165 ---KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHI--DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTA------K  233 (451)
T ss_pred             ---CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccc--cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHH------H
Confidence               00000 01123334466789999999997553  233333444444556799999999998776543211      1


Q ss_pred             HHHhhccCCe-EEEEecCCCCChH
Q 014354          225 SILYKTRLPL-VLAFNKTDVAQHE  247 (426)
Q Consensus       225 ~~l~~~~~P~-IlVlNKiDl~~~~  247 (426)
                      .+-.  .+|+ =+|++|.|-....
T Consensus       234 aF~e--~l~itGvIlTKlDGdaRG  255 (451)
T COG0541         234 AFNE--ALGITGVILTKLDGDARG  255 (451)
T ss_pred             HHhh--hcCCceEEEEcccCCCcc
Confidence            1111  2232 4789999977653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.74  E-value=7.9e-08  Score=85.73  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=93.1

Q ss_pred             hhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccc
Q 014354           35 DKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF  114 (426)
Q Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~  114 (426)
                      ..+.++|.++++...+        ...+++..+.+-+|.|||.+||||||||++|--...+..+.+.+-+-...+-.-..
T Consensus         6 ~l~v~dlHK~~G~~eV--------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~   77 (256)
T COG4598           6 ALEVEDLHKRYGEHEV--------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD   77 (256)
T ss_pred             ceehhHHHhhcccchh--------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC
Confidence            3457889999999888        77788888899999999999999999999998888787776665433211000000


Q ss_pred             ccc--cc------hhh------------------------------------hHHHHHHHHHcCCCCCCCcccccccccc
Q 014354          115 AAN--ID------IRD------------------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus       115 ~t~--i~------~r~------------------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +..  .+      +|.                                    .-+.+..+.++|+.........  .+|+
T Consensus        78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--~LSG  155 (256)
T COG4598          78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--HLSG  155 (256)
T ss_pred             CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--ccCc
Confidence            000  00      000                                    0022345667777765553332  5899


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                      |+++++.+++++.-.+++.++|.|-.
T Consensus       156 GQQQR~aIARaLameP~vmLFDEPTS  181 (256)
T COG4598         156 GQQQRVAIARALAMEPEVMLFDEPTS  181 (256)
T ss_pred             hHHHHHHHHHHHhcCCceEeecCCcc
Confidence            99999999999999999999999964

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.73  E-value=1.3e-07  Score=89.64  Aligned_cols=115  Identities=13%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------ccccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.         .+...++...+    .+.+   
T Consensus        17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~   96 (236)
T TIGR03864        17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR   96 (236)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHH
Confidence            4455566678889999999999999999999999877777776644321         11111211111    0011   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                   ...+.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  160 (236)
T TIGR03864        97 YHAALHGLSRAEARERIAALLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPT  160 (236)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChhhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                         11234567778775421  1223458999999999999999999999999993

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.73  E-value=6.8e-08  Score=102.40  Aligned_cols=119  Identities=15%  Similarity=0.148  Sum_probs=82.8

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------ccccccccccc---chhhhHH
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANI---DIRDTIR  125 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~i---~~r~~~~  125 (426)
                      ...+.+...+++.+|+|+|++|||||||++.|+|...+..+.+.+.+.+.         .+...|+.+.+   .+++.+.
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~  429 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLR  429 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHh
Confidence            36677777889999999999999999999999999999888887766442         23333444321   1333332


Q ss_pred             ----------HHHHHHHcCCCCC-----CCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          126 ----------YKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       126 ----------~~~~~~~~~l~~n-----g~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                                +.++++..++...     .|.-+    .-.-||+|++|++.+|+++.++++++++|.|--
T Consensus       430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TS  499 (529)
T TIGR02868       430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE  499 (529)
T ss_pred             ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                      2334554443210     11111    113489999999999999999999999999953

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.73  E-value=1.6e-07  Score=88.58  Aligned_cols=172  Identities=15%  Similarity=0.169  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+++|+.||||||..+.+.+...+..           ...+..|..+.. .                 .+..       
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-----------T~~L~~T~~ve~-~-----------------~v~~-------   44 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-----------TLRLEPTIDVEK-S-----------------HVRF-------   44 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-----------GGG-----SEEE-E-----------------EEEC-------
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-----------ccccCCcCCceE-E-----------------EEec-------
Confidence            589999999999999999998764421           111111111110 0                 0000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                  .....+.+||.||+..+.... ........+  ..+.++|||+|+.... ...-+......+..+.  
T Consensus        45 ------------~~~~~l~iwD~pGq~~~~~~~-~~~~~~~if--~~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~  108 (232)
T PF04670_consen   45 ------------LSFLPLNIWDCPGQDDFMENY-FNSQREEIF--SNVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQY  108 (232)
T ss_dssp             ------------TTSCEEEEEEE-SSCSTTHTT-HTCCHHHHH--CTESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCCcEEEEEEcCCcccccccc-ccccHHHHH--hccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHh
Confidence                        234688999999998764221 001111222  3468999999997321 2111111112222222  


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ..+..+.+.++|+|+..........+......                 ...+.... ....++.+|... ..+.+-+-.
T Consensus       109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i-----------------~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~  170 (232)
T PF04670_consen  109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI-----------------RDELEDLGIEDITFFLTSIWD-ESLYEAWSK  170 (232)
T ss_dssp             STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH-----------------HHHHHHTT-TSEEEEEE-TTS-THHHHHHHH
T ss_pred             CCCCeEEEEEeecccCCHHHHHHHHHHHHHHH-----------------HHHhhhccccceEEEeccCcC-cHHHHHHHH
Confidence            34667888999999998876555544443211                 11111111 125577777655 556666555


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      +...+
T Consensus       171 Ivq~L  175 (232)
T PF04670_consen  171 IVQKL  175 (232)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            55443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.72  E-value=1.5e-07  Score=88.55  Aligned_cols=115  Identities=16%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----cccccccc---ccchh-------h-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA---NIDIR-------D-  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~t---~i~~r-------~-  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..     ....+..+   ++...       . 
T Consensus        38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~  117 (224)
T cd03220          38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRK  117 (224)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            55666777788999999999999999999999998777777766543311     11111111   11100       0 


Q ss_pred             --hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 --~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        ...+.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|=
T Consensus       118 ~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEP~  170 (224)
T cd03220         118 EIDEKIDEIIEFSELGDFI--DLPVKTYSSGMKARLAFAIATALEPDILLIDEVL  170 (224)
T ss_pred             HHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence              01234566677765422  2233568999999999999999999999999993

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1e-07  Score=95.51  Aligned_cols=115  Identities=16%  Similarity=0.132  Sum_probs=80.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .++
T Consensus        21 l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~  100 (343)
T PRK11153         21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVF  100 (343)
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHH
Confidence            44556667788999999999999999999999998888777776554321             1111111110    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ..++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt  168 (343)
T PRK11153        101 DNVALPLELAGTPKAEIKARVTELLELVGLSDKA--DRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh--hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            1                11345577888876432  1223458999999999999999999999999993

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=9.6e-08  Score=96.16  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=80.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~-  119 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +...++.       +   ++. 
T Consensus        20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~   99 (356)
T PRK11650         20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAY   99 (356)
T ss_pred             EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHh
Confidence            44556667788899999999999999999999998888777766543210        1111111       1   111 


Q ss_pred             -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       .+        ...++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~--~~~~LSgGq~QRvalARAL~~~P~llLLDEP  161 (356)
T PRK11650        100 GLKIRGMPKAEIEERVAEAARILELEPLLDR--KPRELSGGQRQRVAMGRAIVREPAVFLFDEP  161 (356)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCChhHhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence             11        01234567888888653322  2246899999999999999999999999999

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.72  E-value=6.2e-08  Score=90.53  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchh-----------------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIR-----------------  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r-----------------  121 (426)
                      ..+.+-...++...+|+|++||||||||+.+++...+..+.+.+.+...+-...    +.++|                 
T Consensus        47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~----~~elrk~IG~vS~~L~~~~~~~  122 (257)
T COG1119          47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET----IFELRKRIGLVSSELHERFRVR  122 (257)
T ss_pred             ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc----hHHHHHHhCccCHHHHhhcccc
Confidence            566666677888999999999999999999999998887777776654322111    01111                 


Q ss_pred             -------------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 -------------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 -------------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                               +.-++..+++.+++..-....  ...+|.|.++++-+++|+.++++++|+|.|
T Consensus       123 ~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~--~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP  198 (257)
T COG1119         123 ETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP--FGSLSQGEQRRVLIARALVKDPELLILDEP  198 (257)
T ss_pred             cccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc--hhhcCHhHHHHHHHHHHHhcCCCEEEecCc
Confidence                                     111334567777766543322  225899999999999999999999999999

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.72  E-value=9.6e-08  Score=86.71  Aligned_cols=79  Identities=18%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...++.+++|+|++|||||||++.|+|...+..+.+.+.+...  ...++.                             
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--~~~~q~-----------------------------   69 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP--VYKPQY-----------------------------   69 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE--EEEccc-----------------------------
Confidence            4467789999999999999999999999888777766543221  111110                             


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                       ..+|+++++++.+++++..+++++++|.|=
T Consensus        70 -~~LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          70 -IDLSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             -CCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence             017999999999999999999999999993

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.71  E-value=6.1e-08  Score=89.71  Aligned_cols=115  Identities=16%  Similarity=0.090  Sum_probs=80.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccc----cchh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAAN----IDIR----  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~----i~~r----  121 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..         +..+++...    ..++    
T Consensus        16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~   95 (201)
T cd03231          16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLR   95 (201)
T ss_pred             eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHH
Confidence            44556667788999999999999999999999998777777766543321         111111110    0111    


Q ss_pred             ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ...++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  153 (201)
T cd03231          96 FWHADHSDEQVEEALARVGLNGFE--DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT  153 (201)
T ss_pred             hhcccccHHHHHHHHHHcCChhhh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                  122345678888876421  1223458999999999999999999999999994

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.71  E-value=8.5e-08  Score=101.02  Aligned_cols=128  Identities=13%  Similarity=0.171  Sum_probs=70.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccc-ccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-PFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~-~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ..+|+|+|.+|+|||||+|.|++.....            +... +.++.+.                    .+..    
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~------------vss~~~~TTr~~--------------------ei~~----  161 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFS------------TDAFGMGTTSVQ--------------------EIEG----  161 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcccccc------------ccCCCCCceEEE--------------------EEEE----
Confidence            4589999999999999999999986432            1111 2232100                    0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH----HHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI----ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~----l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                    ...+..+.||||||+.+..........    +...+....+|++|||+..........-......+
T Consensus       162 --------------~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~I  227 (763)
T TIGR00993       162 --------------LVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTI  227 (763)
T ss_pred             --------------EECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHH
Confidence                          013468999999999875321111222    22233334578999988654322211111111111


Q ss_pred             HHHHh-hccCCeEEEEecCCCCCh
Q 014354          224 CSILY-KTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       224 ~~~l~-~~~~P~IlVlNKiDl~~~  246 (426)
                      ...+. ..-.-+|||++..|...+
T Consensus       228 q~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       228 TDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhCHHhHcCEEEEEeCCccCCC
Confidence            11111 233457999999999974

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.71  E-value=1.8e-07  Score=88.52  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRD-  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~-  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..           +...++...+    .+++ 
T Consensus        16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~   95 (236)
T cd03219          16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLEN   95 (236)
T ss_pred             ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHH
Confidence            45556667788899999999999999999999987777676665443210           1111111100    0010 


Q ss_pred             -------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                               ...+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  171 (236)
T cd03219          96 VMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL--ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA  171 (236)
T ss_pred             HHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                                     1134566778887542  12233468999999999999999999999999993

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.71  E-value=1.6e-07  Score=87.39  Aligned_cols=113  Identities=17%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch--
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI--  120 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~--  120 (426)
                      +.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..        +...++..          ++..  
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~   95 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence            445556688899999999999999999999998777776655442210        11111111          1110  


Q ss_pred             h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .        ....+.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~  156 (211)
T cd03298          96 SPGLKLTAEDRQAIEVALARVGLAGLEK--RLPGELSGGERQRVALARVLVRDKPVLLLDEPF  156 (211)
T ss_pred             ccccCccHHHHHHHHHHHHHcCCHHHHh--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            0        1113456788888754211  122358999999999999999999999999993

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.71  E-value=1.4e-07  Score=87.66  Aligned_cols=115  Identities=18%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccccc--c---chhh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAAN--I---DIRD-  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~--i---~~r~-  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.          .+...++...  +   .+.+ 
T Consensus        17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~   96 (211)
T cd03225          17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE   96 (211)
T ss_pred             ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHH
Confidence            4455666678889999999999999999999999877777666544321          0111111110  0   0111 


Q ss_pred             ---------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ---------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                     ...+.++++.+++...  .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  162 (211)
T cd03225          97 VAFGLENLGLPEEEIEERVEEALELVGLEGL--RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT  162 (211)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                           1123456777887532  11223468999999999999999999999999993

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.71  E-value=1.4e-07  Score=89.56  Aligned_cols=114  Identities=16%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------cccccccc-------c---ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFA-------A---NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~-------t---~i~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.        .+...++.       +   ++..
T Consensus        18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~   97 (239)
T cd03296          18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAF   97 (239)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhh
Confidence            4455666678889999999999999999999999877766665544221        01111111       1   1110


Q ss_pred             ----h------h----hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 ----R------D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 ----r------~----~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                          +      .    ...+.++++.+++.....  .....+|+|+++++.+++++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~~p~llllDEP  163 (239)
T cd03296          98 GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD--RYPAQLSGGQRQRVALARALAVEPKVLLLDEP  163 (239)
T ss_pred             hhhhccccccCCHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                0      0    112345677888753211  22235899999999999999999999999999

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.70  E-value=2.1e-07  Score=85.18  Aligned_cols=115  Identities=13%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---c--chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN---I--DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~---i--~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..            +...++...   .  .++
T Consensus         8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~   87 (190)
T TIGR01166         8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD   87 (190)
T ss_pred             ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence            44556667788899999999999999999999988777776665443210            111121110   0  001


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  155 (190)
T TIGR01166        88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLR--ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT  155 (190)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            1                11234567777775421  1223468999999999999999999999999994

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.70  E-value=1.3e-07  Score=95.79  Aligned_cols=115  Identities=12%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~~  120 (426)
                      ..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+..        +...++.       +   ++..
T Consensus        19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~   98 (369)
T PRK11000         19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF   98 (369)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHh
Confidence            44556666788899999999999999999999998877777665443210        1111111       1   1110


Q ss_pred             --h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 --R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 --r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        +      .  ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~--~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000         99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLD--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCChhhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence              0      0  123456788888764222  223468999999999999999999999999993

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.70  E-value=1.4e-07  Score=94.90  Aligned_cols=115  Identities=17%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~-  119 (426)
                      ..+.+.....+.+++|+|++|+||||||+.|.|...+..+.+.+.+.+..        +..       +|..+   |+. 
T Consensus        20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~   99 (353)
T TIGR03265        20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAY   99 (353)
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHH
Confidence            34455566678899999999999999999999998888777766543210        110       11111   111 


Q ss_pred             -hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          120 -IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       120 -~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                       .+        ...++.++++.+++.+...  .....||+|+++++.+++++..+++++|+|.|=
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~--~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265       100 GLKNRGMGRAEVAERVAELLDLVGLPGSER--KYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence             11        0224567888888875322  223468999999999999999999999999993

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.70  E-value=1.7e-07  Score=89.23  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=78.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc----chhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI----DIRD--  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i----~~r~--  122 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.          .+...++...+    .+.+  
T Consensus        17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l   96 (242)
T cd03295          17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENI   96 (242)
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHH
Confidence            4455666778889999999999999999999999877777666544321          01111111100    0111  


Q ss_pred             --------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 --------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                    ...+.++++.+++.+..-.-.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  162 (242)
T cd03295          97 ALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP  162 (242)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                          1134566888887640011122345899999999999999999999999999

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.70  E-value=1.9e-07  Score=87.07  Aligned_cols=111  Identities=13%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----chhh
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DIRD  122 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~r~  122 (426)
                      +.+....+ .+++|+|++|+|||||++.|+|...+..+.+.+.+.+..              +...++...+    .+.+
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            45555667 899999999999999999999998777776665443210              1111111110    0111


Q ss_pred             --------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 --------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                    ..++.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  158 (214)
T cd03297          95 NLAFGLKRKRNREDRISVDELLDLLGLDHLL--NRYPAQLSGGEKQRVALARALAAQPELLLLDEP  158 (214)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh--hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                          11345577888875421  123346899999999999999999999999999

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.69  E-value=5.3e-07  Score=87.96  Aligned_cols=157  Identities=17%  Similarity=0.176  Sum_probs=91.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+++++|-+|+||||.+..|.......+.++.+...|.--      .    ...-.++.+-+++|..-    ... 
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR------A----aAiEQL~~w~er~gv~v----I~~-  200 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR------A----AAIEQLEVWGERLGVPV----ISG-  200 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH------H----HHHHHHHHHHHHhCCeE----Ecc-
Confidence            45689999999999999999999999999999999998777310      0    11112233344444221    110 


Q ss_pred             ccccccH-HHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcC------CcEEEEEEeCCCCCCchhhhh
Q 014354          146 NLFTTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTF------PTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       146 ~~ls~~~-~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~------~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      ..-++.- --.-.+-.+..++++++|+||+|-..-  ...+...+....+-..      ++-+++|+|+..|-+..... 
T Consensus       201 ~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA-  277 (340)
T COG0552         201 KEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA-  277 (340)
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH-
Confidence            0001100 001223345678899999999996542  3334344433333222      44588888998876653321 


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                            +.....--=.=+|++|+|-...
T Consensus       278 ------k~F~eav~l~GiIlTKlDgtAK  299 (340)
T COG0552         278 ------KIFNEAVGLDGIILTKLDGTAK  299 (340)
T ss_pred             ------HHHHHhcCCceEEEEecccCCC
Confidence                  1111111123588999995544

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.69  E-value=6.5e-08  Score=95.24  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...+....+    .+.+   
T Consensus        18 l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~   97 (301)
T TIGR03522        18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQ   97 (301)
T ss_pred             EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHH
Confidence            45556667788999999999999999999999998888887776554321         1212221111    0111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ..++.++++.+++.+...  .....+|+|+++++.++.++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lliLDEP  160 (301)
T TIGR03522        98 FIAGIYGMKGQLLKQRVEEMIELVGLRPEQH--KKIGQLSKGYRQRVGLAQALIHDPKVLILDEP  160 (301)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHhc--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                         123456788888875322  22346899999999999999999999999999

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.69  E-value=8.9e-08  Score=86.84  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN  138 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n  138 (426)
                      ..+.+....++.+++|+|++|+||||||+.+++    ..+.+.+.+..+.....    .+.....   .++++.+++...
T Consensus        11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~----~~~~~~q---~~~l~~~~L~~~   79 (176)
T cd03238          11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRN----KLIFIDQ---LQFLIDVGLGYL   79 (176)
T ss_pred             ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccc----cEEEEhH---HHHHHHcCCCcc
Confidence            556667778899999999999999999999874    23334433221111100    0110111   457788887642


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcC--CCEEEEcCCC
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADH--LDYVLVDTPG  175 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~--~~~~liDTPG  175 (426)
                       ..-.....+|+++++++.+++++..+  ++++|+|.|-
T Consensus        80 -~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt  117 (176)
T cd03238          80 -TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS  117 (176)
T ss_pred             -ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence             11222345899999999999999999  9999999994

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.69  E-value=9.4e-08  Score=90.26  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------ccccccccccc----chhh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------AVMTLPFAANI----DIRD-  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------~v~~~~~~t~i----~~r~-  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.           .+...++...+    .+++ 
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~   95 (232)
T cd03218          16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEEN   95 (232)
T ss_pred             eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHH
Confidence            4555666778889999999999999999999999877777666543321           01111111110    0111 


Q ss_pred             ---------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 ---------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                     ..++.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  160 (232)
T cd03218          96 ILAVLEIRGLSKKEREEKLEELLEEFHITHLR--KSKASSLSGGERRRVEIARALATNPKFLLLDEP  160 (232)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                           11234567777775421  222346899999999999999999999999999

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.2e-06  Score=85.77  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=86.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccC--ccccccccccc-cchhhhHHHHHHHHHcCCCCC
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLD--PAVMTLPFAAN-IDIRDTIRYKEVMKQFNLGPN  138 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d--~~v~~~~~~t~-i~~r~~~~~~~~~~~~~l~~n  138 (426)
                      .-+.|.++|.=..||||+++.|+...++..+.+      +.+...  +.-..+|+++. ++-..                
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~----------------  120 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKK----------------  120 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCC----------------
Confidence            346799999999999999999999987743211      000000  11222333321 11000                


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCCCcccccchh-chH---HHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPGQIEIFTWS-ASG---AIITEAFASTFPTVVTYVVDTPRSA  211 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTPGi~e~~~~~-~~~---~~l~~~~~~~~~d~vl~VVDa~~~~  211 (426)
                        .+..++.|...+..+..-++  ...   -.+.||||||+.+....+ ..+   ..+.+.|+ ..+|.|+++.|+.. +
T Consensus       121 --pF~gL~~FG~aflnRf~csq--mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-eR~D~IiLlfD~hK-L  194 (532)
T KOG1954|consen  121 --PFRGLNKFGNAFLNRFMCSQ--LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-ERVDRIILLFDAHK-L  194 (532)
T ss_pred             --chhhhhhhHHHHHHHHHHhc--CChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-HhccEEEEEechhh-c
Confidence              01112223333322221111  000   267899999998753211 111   12222232 45899999999854 3


Q ss_pred             CchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHH
Q 014354          212 NPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW  252 (426)
Q Consensus       212 ~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~  252 (426)
                      +..+..   ..++..++-.+-.+-||+||.|.++.+.+.++
T Consensus       195 DIsdEf---~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRV  232 (532)
T KOG1954|consen  195 DISDEF---KRVIDALKGHEDKIRVVLNKADQVDTQQLMRV  232 (532)
T ss_pred             cccHHH---HHHHHHhhCCcceeEEEeccccccCHHHHHHH
Confidence            333322   22345556566667899999999998865444

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.69  E-value=7.2e-08  Score=95.02  Aligned_cols=114  Identities=13%  Similarity=0.165  Sum_probs=78.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~~--  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...++...+    .+++.  
T Consensus        20 l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~   99 (303)
T TIGR01288        20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL   99 (303)
T ss_pred             EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHH
Confidence            55666777888999999999999999999999988777777766543210         1111111110    01111  


Q ss_pred             --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                    ..+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP  162 (303)
T TIGR01288       100 VFGRYFGMSTREIEAVIPSLLEFARLESKA--DVRVALLSGGMKRRLTLARALINDPQLLILDEP  162 (303)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCChhHh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                          1234567777775421  122345899999999999999999999999999

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.68  E-value=8e-08  Score=89.58  Aligned_cols=115  Identities=14%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .+.
T Consensus        18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   97 (214)
T TIGR02673        18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY   97 (214)
T ss_pred             ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence            45556667788899999999999999999999998777777665443211             1111111100    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt  165 (214)
T TIGR02673        98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKA--DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT  165 (214)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            1                11234567777775421  1223468999999999999999999999999993

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.68  E-value=3.5e-07  Score=88.80  Aligned_cols=106  Identities=18%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +...++|+|.||+|||||+|+|+.....             ..++|++|                  ++||-+.+..   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-------------~~NfPF~T------------------IdPn~a~V~v---   64 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-------------AANFPFCT------------------IDPNEARVEV---   64 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC-------------ccCCCcce------------------eccccceeec---
Confidence            4468999999999999999999998743             56788887                  3333332211   


Q ss_pred             ccccHHHHHHHHHHH-hcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          148 FTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       148 ls~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      -..-+++...+.... .-...+.++|.+|...... -..+|......++  .+|.++.||+++.
T Consensus        65 ~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR--~vDaifhVVr~f~  126 (391)
T KOG1491|consen   65 PDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIR--HVDAIFHVVRAFE  126 (391)
T ss_pred             CchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhh--hccceeEEEEecC
Confidence            122233333332210 1124678999999987532 2235554444443  3688999998764

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.68  E-value=2.6e-07  Score=87.39  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----ccccccc-------c---ccchh------
Q 014354           63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFA-------A---NIDIR------  121 (426)
Q Consensus        63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~-------t---~i~~r------  121 (426)
                      +....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..     ....++.       +   ++...      
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~   84 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP   84 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence            3445677899999999999999999999998877777766443210     0111111       1   11010      


Q ss_pred             ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ....+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus        85 ~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  142 (230)
T TIGR01184        85 DLSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF  142 (230)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHH--HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence                  01124556777777532  12233468999999999999999999999999993

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.67  E-value=3.3e-07  Score=95.20  Aligned_cols=150  Identities=19%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC--CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~--~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      .++.+|+|+|++|+||||++.+|.......  +.++.++..|+.-.    +.    .      +.+..++-  ..++...
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi----gA----~------EQLk~ya~--iLgv~v~  411 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV----GG----R------EQLHSYGR--QLGIAVH  411 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc----cH----H------HHHHHhhc--ccCceeE
Confidence            456799999999999999999999864333  35677776664211    00    0      11111110  0111110


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                         ....-..+...+.. ..+++++||||||.....  ......+. .+........++||++..+.....      .++
T Consensus       412 ---~a~d~~~L~~aL~~-l~~~DLVLIDTaG~s~~D--~~l~eeL~-~L~aa~~~a~lLVLpAtss~~Dl~------eii  478 (559)
T PRK12727        412 ---EADSAESLLDLLER-LRDYKLVLIDTAGMGQRD--RALAAQLN-WLRAARQVTSLLVLPANAHFSDLD------EVV  478 (559)
T ss_pred             ---ecCcHHHHHHHHHH-hccCCEEEecCCCcchhh--HHHHHHHH-HHHHhhcCCcEEEEECCCChhHHH------HHH
Confidence               01111122222222 356899999999985431  11111121 222222345677888765432211      112


Q ss_pred             HHHhhccCCeEEEEecCCCCCh
Q 014354          225 SILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ..+.. ..+.-+|+||+|....
T Consensus       479 ~~f~~-~~~~gvILTKlDEt~~  499 (559)
T PRK12727        479 RRFAH-AKPQGVVLTKLDETGR  499 (559)
T ss_pred             HHHHh-hCCeEEEEecCcCccc
Confidence            22222 2577899999997543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.67  E-value=2.2e-07  Score=87.47  Aligned_cols=115  Identities=15%  Similarity=0.107  Sum_probs=77.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.              .+...++...+    .+
T Consensus        26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv  105 (228)
T PRK10584         26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNA  105 (228)
T ss_pred             EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCH
Confidence            4455566678899999999999999999999999877766665543221              01111111100    00


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+                ..++.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus       106 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt  174 (228)
T PRK10584        106 LENVELPALLRGESSRQSRNGAKALLEQLGLGKRL--DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT  174 (228)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            11                12345567788775321  1223458999999999999999999999999993

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.67  E-value=1.9e-07  Score=86.69  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r~----  122 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..        +...++...+    .+++    
T Consensus        16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~   95 (208)
T cd03268          16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRL   95 (208)
T ss_pred             EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHH
Confidence            44555666788899999999999999999999988777776665443210        1111111100    0111    


Q ss_pred             --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ..++.++++.+++....  -.....+|+|+++++.++.++..+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  154 (208)
T cd03268          96 LARLLGIRKKRIDEVLDVVGLKDSA--KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT  154 (208)
T ss_pred             HHHhcCCcHHHHHHHHHHcCCHHHH--hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence                    12345667888775421  1223458999999999999999999999999994

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.67  E-value=1.5e-07  Score=94.77  Aligned_cols=114  Identities=15%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccc-------c---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFA-------A---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~-------t---~i~-  119 (426)
                      ..+.+....++.+++|+|++||||||||+.|+|...+..+.+.+.+.+..        +...++.       +   ++. 
T Consensus        18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~   97 (353)
T PRK10851         18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAF   97 (353)
T ss_pred             EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHh
Confidence            44555666788899999999999999999999998887777766543310        1111111       1   111 


Q ss_pred             -hh------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 -IR------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 -~r------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       .+            ...++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGq~QRvalArAL~~~P~llLLDEP  163 (353)
T PRK10851         98 GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD--RYPAQLSGGQKQRVALARALAVEPQILLLDEP  163 (353)
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence             00            0123456788888864322  12246899999999999999999999999999

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.67  E-value=2.8e-07  Score=92.67  Aligned_cols=156  Identities=13%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccC-C-ceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~-~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ..++.+++|+|++||||||++.+|....... + .++.++..|..-    .+.    .+  .+...-+.+++...  .+.
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R----~ga----~E--qL~~~a~~~gv~~~--~~~  201 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR----IGG----HE--QLRIFGKILGVPVH--AVK  201 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc----ccH----HH--HHHHHHHHcCCceE--ecC
Confidence            4566799999999999999999999875433 3 467776655321    010    11  11111222332110  011


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      +    ...+..    +.....+.+++||||||.....  ......+........+.-.++|+++..+.......   ...
T Consensus       202 ~----~~~l~~----~l~~l~~~DlVLIDTaG~~~~d--~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~  268 (374)
T PRK14722        202 D----GGDLQL----ALAELRNKHMVLIDTIGMSQRD--RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQA  268 (374)
T ss_pred             C----cccHHH----HHHHhcCCCEEEEcCCCCCccc--HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHH
Confidence            0    111111    1122456899999999976431  11222222221223356678999998766543311   111


Q ss_pred             HHHHhh---cc--CCeEEEEecCCCCCh
Q 014354          224 CSILYK---TR--LPLVLAFNKTDVAQH  246 (426)
Q Consensus       224 ~~~l~~---~~--~P~IlVlNKiDl~~~  246 (426)
                      ......   ..  -+.=+|++|.|-...
T Consensus       269 f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        269 YRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             HHHhhcccccccCCCCEEEEeccccCCC
Confidence            111100   00  134688999997664

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=2.1e-07  Score=90.65  Aligned_cols=114  Identities=14%  Similarity=0.077  Sum_probs=80.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc--cc---chhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA--NI---DIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t--~i---~~r~~  123 (426)
                      ....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..          +...++..  .+   .+.+.
T Consensus        23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~en  102 (279)
T PRK13635         23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDD  102 (279)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHH
Confidence            44555667788899999999999999999999998888777776554321          11111111  00   01111


Q ss_pred             ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                      .++.+++..+++.+.  +-.....||+|+++++.+++++..+++++|+|.|
T Consensus       103 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP  167 (279)
T PRK13635        103 VAFGLENIGVPREEMVERVDQALRQVGMEDF--LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEA  167 (279)
T ss_pred             HhhhHhhCCCCHHHHHHHHHHHHHHcCChhh--hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                            124566778887643  2233346999999999999999999999999999

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.67  E-value=2.1e-07  Score=93.87  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=80.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCC--ceEEEeccCcc--------cc-------cccccc---cc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPA--------VM-------TLPFAA---NI  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~--~~~~i~~~d~~--------v~-------~~~~~t---~i  118 (426)
                      ..+.+.....+.+++|+|++|+||||||+.|.|...+..  +.+.+.+.+..        +.       -+|..+   ++
T Consensus        21 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl  100 (362)
T TIGR03258        21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV  100 (362)
T ss_pred             EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHH
Confidence            455566667888999999999999999999999988877  77666443310        00       011111   11


Q ss_pred             c--hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          119 D--IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       119 ~--~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .  .+        ...++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       101 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP  164 (362)
T TIGR03258       101 AFGLRAQKMPKADIAERVADALKLVGLGDAAA--HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP  164 (362)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence            1  11        0123566788888875432  22346999999999999999999999999999

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=2.4e-07  Score=90.13  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----ccchhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----NIDIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----~i~~r~~  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++..     ...+.+.
T Consensus        20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~   99 (277)
T PRK13652         20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQD   99 (277)
T ss_pred             eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHH
Confidence            44556667788999999999999999999999998888777766543211          11111110     0000111


Q ss_pred             ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                      ..+.++++.+++.+.  .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP  164 (277)
T PRK13652        100 IAFGPINLGLDEETVAHRVSSALHMLGLEEL--RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP  164 (277)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHCCChhH--hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                            124566788887643  2223346999999999999999999999999999

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.66  E-value=2.1e-07  Score=87.03  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccccc----cchhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAAN----IDIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~----i~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...++...    ..+.+   
T Consensus        21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  100 (218)
T cd03266          21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLE  100 (218)
T ss_pred             ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHH
Confidence            44555666788899999999999999999999998777777666443211         111111110    00111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ...+.++++.+++...  .-.....+|+|+++++.+++++..+++++++|.|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~illlDEP  163 (218)
T cd03266         101 YFAGLYGLKGDELTARLEELADRLGMEEL--LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP  163 (218)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                         1134557788887532  1123345899999999999999999999999999

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=2.1e-07  Score=93.46  Aligned_cols=115  Identities=15%  Similarity=0.206  Sum_probs=79.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~-  119 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +..       +|..+   |+. 
T Consensus        22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~  101 (351)
T PRK11432         22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY  101 (351)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHH
Confidence            44556667788899999999999999999999998888777766543210        011       11111   111 


Q ss_pred             -hh------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          120 -IR------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       120 -~r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                       .+      .  ..++.++++.+++.....-  ....+|+|+++++.+++++..+++++|+|.|=
T Consensus       102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r--~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~  164 (351)
T PRK11432        102 GLKMLGVPKEERKQRVKEALELVDLAGFEDR--YVDQISGGQQQRVALARALILKPKVLLFDEPL  164 (351)
T ss_pred             HHhHcCCCHHHHHHHHHHHHHHcCCchhhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence             11      0  1234567788887643221  22468999999999999999999999999993

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.66  E-value=9.4e-08  Score=88.97  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=75.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++ +++|+|++|+|||||++.|.|...+..+.+.+.+.+..         +...++...+    .+.+   
T Consensus        16 l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   94 (211)
T cd03264          16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD   94 (211)
T ss_pred             EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHH
Confidence            34455555567 99999999999999999999988777777665443211         1111111100    0111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                   ...+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  157 (211)
T cd03264          95 YIAWLKGIPSKEVKARVDEVLELVNLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP  157 (211)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHCCCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                         1123456777777532  1123345899999999999999999999999999

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.66  E-value=9e-08  Score=88.73  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=79.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------ccccccc-------c---ccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFA-------A---NID  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~-------t---~i~  119 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +...++.       +   ++.
T Consensus        17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~   96 (204)
T PRK13538         17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLR   96 (204)
T ss_pred             EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHH
Confidence            45666677788999999999999999999999998887777766443210         1111111       1   010


Q ss_pred             h-------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 I-------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ~-------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .       .....+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  156 (204)
T PRK13538         97 FYQRLHGPGDDEALWEALAQVGLAGFE--DVPVRQLSAGQQRRVALARLWLTRAPLWILDEP  156 (204)
T ss_pred             HHHHhcCccHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            0       1112345678888875321  223346999999999999999999999999999

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.66  E-value=1.1e-07  Score=88.60  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc----cchhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN----IDIRD  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~----i~~r~  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..            +...++...    ..+.+
T Consensus        16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e   95 (213)
T cd03262          16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLE   95 (213)
T ss_pred             ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHH
Confidence            44556666788899999999999999999999998777777766543210            111111110    00111


Q ss_pred             -----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                       ...+.++++.+++.+.  .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~  163 (213)
T cd03262          96 NITLAPIKVKGMSKAEAEERALELLEKVGLADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT  163 (213)
T ss_pred             HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH--hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                             0123456777777542  11222458999999999999999999999999993

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.66  E-value=8.7e-08  Score=89.13  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=77.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------cccccccccc----cchhh------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------AVMTLPFAAN----IDIRD------  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------~v~~~~~~t~----i~~r~------  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.      .+...++...    ..+++      
T Consensus        16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   95 (210)
T cd03269          16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA   95 (210)
T ss_pred             EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHH
Confidence            3445556678889999999999999999999998777777666544321      0111111110    00011      


Q ss_pred             ----------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ----------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                ...+.++++.+++...  .-.....+|+|+++++.++.++..+++++++|.|-
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~  156 (210)
T cd03269          96 QLKGLKKEEARRRIDEWLERLELSEY--ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF  156 (210)
T ss_pred             HHcCCChHHHHHHHHHHHHHcCChHH--HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                      1124556777777532  11223458999999999999999999999999994

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.65  E-value=2.4e-07  Score=93.27  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=76.6

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccccc----cchhhh
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAAN----IDIRDT  123 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~----i~~r~~  123 (426)
                      .+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++...    ..+++.
T Consensus        17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en   96 (352)
T PRK11144         17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGN   96 (352)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHH
Confidence            44455677899999999999999999999998777777665442210              111111110    011111


Q ss_pred             ----------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ----------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                .++.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 l~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qRvalaraL~~~p~llLLDEP  155 (352)
T PRK11144         97 LRYGMAKSMVAQFDKIVALLGIEPLL--DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP  155 (352)
T ss_pred             HHhhhhhhhHHHHHHHHHHcCCchhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence                      2345678888886422  122346899999999999999999999999999

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=1.6e-07  Score=91.27  Aligned_cols=115  Identities=15%  Similarity=0.049  Sum_probs=79.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----------c
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----------N  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----------~  117 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..          +...++..           +
T Consensus        21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~  100 (274)
T PRK13647         21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD  100 (274)
T ss_pred             eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence            45556667788999999999999999999999998777776665443210          11111111           1


Q ss_pred             cch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          118 IDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       118 i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +..  +        ...++.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt  166 (274)
T PRK13647        101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFR--DKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM  166 (274)
T ss_pred             HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            110  0        012345677888875422  2223468999999999999999999999999994

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.65  E-value=9.3e-08  Score=89.07  Aligned_cols=115  Identities=10%  Similarity=0.082  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .++
T Consensus        17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~   96 (214)
T cd03292          17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVY   96 (214)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHH
Confidence            44555666788899999999999999999999998777776665443211             1111111100    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ...+.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  164 (214)
T cd03292          97 ENVAFALEVTGVPPREIRKRVPAALELVGLSHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPT  164 (214)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            1                11234567777775421  1223458999999999999999999999999993

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.65  E-value=2.4e-07  Score=93.28  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------ccccccccc----cchhhh
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAAN----IDIRDT  123 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~----i~~r~~  123 (426)
                      .+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++...    ..+++.
T Consensus        16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en   95 (354)
T TIGR02142        16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN   95 (354)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHH
Confidence            44455677899999999999999999999998777776665443210              111111110    011111


Q ss_pred             --------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 --------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 --------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                    .++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus        96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGqkqRvalAraL~~~p~lllLDEP  158 (354)
T TIGR02142        96 LRYGMKRARPSERRISFERVIELLGIGHLLG--RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP  158 (354)
T ss_pred             HHHHhhccChhHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence                          12456788888764322  22235899999999999999999999999999

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.65  E-value=5.8e-08  Score=86.87  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN  138 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n  138 (426)
                      ....+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+...  .+      .++..+     .      .
T Consensus        16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~--~~------~~~~~~-----~------~   76 (163)
T cd03216          16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--AS------PRDARR-----A------G   76 (163)
T ss_pred             EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc--CC------HHHHHh-----c------C
Confidence            445556677889999999999999999999999988877777665432211  00      000000     0      0


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      -+.+.   .+|+++++++.+++++..+++++|+|.|-
T Consensus        77 i~~~~---qLS~G~~qrl~laral~~~p~illlDEP~  110 (163)
T cd03216          77 IAMVY---QLSVGERQMVEIARALARNARLLILDEPT  110 (163)
T ss_pred             eEEEE---ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            12221   28999999999999999999999999994

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.65  E-value=2.1e-07  Score=88.11  Aligned_cols=117  Identities=17%  Similarity=0.083  Sum_probs=86.3

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccccc------------c--hhhh
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI------------D--IRDT  123 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i------------~--~r~~  123 (426)
                      +..+.+...+++.+++++|++||||||+|+.|+|...+.++.+.|.+.+|--....|-..+            +  +.+.
T Consensus        39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds  118 (325)
T COG4586          39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS  118 (325)
T ss_pred             hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence            3556777788999999999999999999999999999999999999998853211111111            1  1111


Q ss_pred             ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                                      -+.+.+.+.+++.+  -+-..++-+|.|.+-++.++.++...++++|+|.|-+
T Consensus       119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~--~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv  185 (325)
T COG4586         119 LEVLKLIYEIPDDEFAERLDFLTEILDLEG--FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV  185 (325)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcchh--hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence                            12334455555552  2334456689999999999999999999999999965

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.65  E-value=1.6e-07  Score=88.46  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc------c---ccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA------A---NID  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~------t---~i~  119 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..          +...++.      +   ++.
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~  102 (225)
T PRK10247         23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI  102 (225)
T ss_pred             eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHH
Confidence            45566777788999999999999999999999987777776665443210          1111111      0   111


Q ss_pred             h----h----hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 I----R----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ~----r----~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .    +    ....+.++++.+++... -.-.....+|+|+++++.+++++..+++++|+|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (225)
T PRK10247        103 FPWQIRNQQPDPAIFLDDLERFALPDT-ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI  164 (225)
T ss_pred             hHHhhcCCChHHHHHHHHHHHcCCChH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            0    0    11234567778887421 01122345899999999999999999999999999

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.64  E-value=3e-07  Score=89.07  Aligned_cols=115  Identities=13%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++...+    .+.
T Consensus        23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~  102 (269)
T PRK11831         23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVF  102 (269)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHH
Confidence            44556667788899999999999999999999998776666655432210             1111111100    011


Q ss_pred             hh-----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 DT-----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~~-----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +.                 ..+.++++.+++...  .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  171 (269)
T PRK11831        103 DNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA--AKLMPSELSGGMARRAALARAIALEPDLIMFDEPF  171 (269)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            11                 123345777777532  12223468999999999999999999999999993

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.64  E-value=1.1e-07  Score=87.75  Aligned_cols=115  Identities=11%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------cccccccccc----cchhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAAN----IDIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~----i~~r~---  122 (426)
                      ....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.         .+...++...    ..+.+   
T Consensus        16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~   95 (198)
T TIGR01189        16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLH   95 (198)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHH
Confidence            4455666778889999999999999999999999877777665544321         0111111110    00111   


Q ss_pred             ---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               ...+.++++.+++.+..  -.....||+|+++++.+++++..+++++++|.|-
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  155 (198)
T TIGR01189        96 FWAAIHGGAQRTIEDALAAVGLTGFE--DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT  155 (198)
T ss_pred             HHHHHcCCcHHHHHHHHHHcCCHHHh--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                     11245667778776421  1223468999999999999999999999999993

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.64  E-value=3e-07  Score=86.65  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=72.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~---  122 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..          +...++...+   .+.+   
T Consensus        19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~   98 (229)
T cd03254          19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR   98 (229)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHh
Confidence            44555666788899999999999999999999998777777666443210          1111111110   0000   


Q ss_pred             -------hHHHHHHHHHcCCCC---------CCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------TIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------~~~~~~~~~~~~l~~---------ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                             ...+.+.++.+++..         ..-.......+|+|+++++.+++++..+++++|+|.|=
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~  167 (229)
T cd03254          99 LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT  167 (229)
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence                   011122222222210         00011123468999999999999999999999999993

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.64  E-value=3.1e-07  Score=85.04  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=78.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..              +...++...+    .+
T Consensus        14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   93 (206)
T TIGR03608        14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETV   93 (206)
T ss_pred             EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcH
Confidence            44556666788899999999999999999999998777777666543310              1111111100    01


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++                ..++.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        94 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lS~G~~qr~~laral~~~p~llllDEPt  162 (206)
T TIGR03608        94 EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL--KQKIYELSGGEQQRVALARAILKDPPLILADEPT  162 (206)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            11                11234567888875321  1223458999999999999999999999999994

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.64  E-value=2.6e-07  Score=93.64  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cc-------cccccc---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VM-------TLPFAA---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~-------~~~~~t---~i~-  119 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +.       -+|..+   |+. 
T Consensus        30 l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~  109 (375)
T PRK09452         30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAF  109 (375)
T ss_pred             EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHH
Confidence            34455666788899999999999999999999998887777665543310        00       011111   111 


Q ss_pred             -hh------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          120 -IR------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       120 -~r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                       .+      .  ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|=
T Consensus       110 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~  172 (375)
T PRK09452        110 GLRMQKTPAAEITPRVMEALRMVQLEEFAQ--RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL  172 (375)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence             11      0  113456777888764322  222458999999999999999999999999993

>cd01858 NGP_1 NGP-1

Probab=98.64  E-value=3.1e-08  Score=87.88  Aligned_cols=28  Identities=18%  Similarity=0.369  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      +...|+++|.||+|||||+|+|++....
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~  128 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVC  128 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCce
Confidence            3467889999999999999999987643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=1.3e-07  Score=89.89  Aligned_cols=115  Identities=12%  Similarity=0.093  Sum_probs=78.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------------ccccccccccc----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------------AVMTLPFAANI----  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------------~v~~~~~~t~i----  118 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.                .+...++...+    
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (242)
T PRK11124         18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL   97 (242)
T ss_pred             EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCC
Confidence            4455566678889999999999999999999999877777766644321                01111211100    


Q ss_pred             chhh-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 DIRD-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 ~~r~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+.+                 ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|=
T Consensus        98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~laral~~~p~llilDEPt  169 (242)
T PRK11124         98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA--DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT  169 (242)
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            0111                 11234567778775422  2223468999999999999999999999999993

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=2.8e-07  Score=90.31  Aligned_cols=115  Identities=14%  Similarity=0.050  Sum_probs=79.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc--------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA--------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t--------  116 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..              +...++.+        
T Consensus        23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t  102 (290)
T PRK13634         23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEET  102 (290)
T ss_pred             eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhh
Confidence            55566677788999999999999999999999998777776665443210              11111111        


Q ss_pred             ---ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          117 ---NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       117 ---~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                         ++..  +        ....+.++++.+++.+.- .-.....||+|+++++.+++++..+++++|+|.|
T Consensus       103 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEP  172 (290)
T PRK13634        103 VEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL-LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP  172 (290)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh-hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence               1100  0        011345678888875211 1122345899999999999999999999999999

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.6e-07  Score=89.99  Aligned_cols=115  Identities=9%  Similarity=0.033  Sum_probs=80.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc--------c---c
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA--------A---N  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~--------t---~  117 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++.        +   +
T Consensus        23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en  102 (279)
T PRK13650         23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDD  102 (279)
T ss_pred             eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHH
Confidence            45556667788999999999999999999999998888777766554321          1111111        1   1


Q ss_pred             cch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          118 IDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       118 i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +..  +        ...++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       103 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt  168 (279)
T PRK13650        103 VAFGLENKGIPHEEMKERVNEALELVGMQDFKE--REPARLSGGQKQRVAIAGAVAMRPKIIILDEAT  168 (279)
T ss_pred             HHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            110  0        0123456788888864211  122358999999999999999999999999993

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.63  E-value=2.8e-07  Score=96.77  Aligned_cols=115  Identities=14%  Similarity=0.020  Sum_probs=80.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc------------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA------------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t------------  116 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..          +...++..            
T Consensus        19 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~   98 (490)
T PRK10938         19 LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDT   98 (490)
T ss_pred             cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhc
Confidence            55666677788999999999999999999999987777666655332210          11111110            


Q ss_pred             ccchhh--------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          117 NIDIRD--------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       117 ~i~~r~--------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .....+        ..++.++++.+++....  -.....||+|+++++.++.++..+++++|+|.|-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  163 (490)
T PRK10938         99 GRTTAEIIQDEVKDPARCEQLAQQFGITALL--DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF  163 (490)
T ss_pred             cccHHHhcccchhHHHHHHHHHHHcCCHhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            011111        22456778888886432  2233469999999999999999999999999993

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.63  E-value=2.2e-07  Score=87.97  Aligned_cols=116  Identities=18%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccc---c----ccccc--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTL---P----FAANI--  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~---~----~~t~i--  118 (426)
                      ..+.+....++..++|+|++|||||||++.|.|-..+..+.+.+.+.+..           +...   |    +.+++  
T Consensus        20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~   99 (235)
T COG1122          20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED   99 (235)
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence            44556667788899999999999999999999999999888765544311           0000   0    00000  


Q ss_pred             ---------ch---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          119 ---------DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       119 ---------~~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                               .+   .-..++.++++.+++.....  .....||+|.++++.+|.++..+++++++|.|.-
T Consensus       100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~--r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta  167 (235)
T COG1122         100 EVAFGLENLGLPREEIEERVAEALELVGLEELLD--RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA  167 (235)
T ss_pred             HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc--CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence                     00   11234567788888765422  2223589999999999999999999999999954

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=3.4e-07  Score=87.15  Aligned_cols=115  Identities=13%  Similarity=0.143  Sum_probs=78.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++...+   .+++   
T Consensus        19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~   98 (241)
T PRK14250         19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE   98 (241)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHh
Confidence            44556666788899999999999999999999998777777766543310          1111111100   0011   


Q ss_pred             ---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 ---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                               ..++.++++.+++... -.-.....+|+|+++++.+++++..+++++|+|.|
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  158 (241)
T PRK14250         99 YGPMLKGEKNVDVEYYLSIVGLNKE-YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP  158 (241)
T ss_pred             cchhhcCcHHHHHHHHHHHcCCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                     1234567788887521 01122345899999999999999999999999999

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=3e-07  Score=86.92  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch--
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI--  120 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~--  120 (426)
                      +.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.        .+...++..          ++..  
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   96 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL   96 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence            34455667889999999999999999999999877776665544321        011111111          1110  


Q ss_pred             --------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 --------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                              ....++.++++.+++.+.  +-.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP  156 (232)
T PRK10771         97 NPGLKLNAAQREKLHAIARQMGIEDL--LARLPGQLSGGQRQRVALARCLVREQPILLLDEP  156 (232)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCcHHH--HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                    011234556777877532  1222345899999999999999999999999999

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.63  E-value=4.1e-07  Score=86.37  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------cccccc-ccccc----chhhh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLP-FAANI----DIRDT-  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~-~~t~i----~~r~~-  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.         .+...+ ....+    ..++. 
T Consensus        37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l  116 (236)
T cd03267          37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSF  116 (236)
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHH
Confidence            5566677778899999999999999999999998777766666543321         011111 10000    00110 


Q ss_pred             ---------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                     ..+..+++.+++.+.  .-.....+|+|+++++.++.++..+++++|+|.|-
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  181 (236)
T cd03267         117 YLLAAIYDLPPARFKKRLDELSELLDLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT  181 (236)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhH--hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                           123445677776532  12233458999999999999999999999999993

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.63  E-value=1.6e-07  Score=89.32  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=79.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------ccccccccc----cchh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAAN----IDIR--  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~----i~~r--  121 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..           +...++...    ..+.  
T Consensus        18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~n   97 (242)
T TIGR03411        18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFEN   97 (242)
T ss_pred             eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHH
Confidence            45566667788899999999999999999999998777777666553311           111111100    0011  


Q ss_pred             ----------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 ----------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ----------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                            ....+.++++.+++.+..  -.....+|+|+++++.+++++..+++++++|.|=
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt  171 (242)
T TIGR03411        98 LELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA--DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV  171 (242)
T ss_pred             HHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence                                  112345567788876421  2233468999999999999999999999999993

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.2e-07  Score=96.30  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=89.8

Q ss_pred             hhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccc
Q 014354           45 MDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPF  114 (426)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~  114 (426)
                      ..++...++.......+.+...+++..++|+|++|+|||||++.|+|...+..+.+.+-+.+-          .++.+++
T Consensus       323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q  402 (559)
T COG4988         323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ  402 (559)
T ss_pred             ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence            445555444433446677788889999999999999999999999999988888877765541          1333333


Q ss_pred             cccc---chhhhH----------HHHHHHHHcCCCC----CCCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354          115 AANI---DIRDTI----------RYKEVMKQFNLGP----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDT  173 (426)
Q Consensus       115 ~t~i---~~r~~~----------~~~~~~~~~~l~~----ng~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDT  173 (426)
                      .+.+   .+|+++          .+.+++++.++.+    +.|.-+    .-+-+|+|+.+++.+++++..+.++++.|.
T Consensus       403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE  482 (559)
T COG4988         403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE  482 (559)
T ss_pred             CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence            3322   244443          2344455444332    123222    223489999999999999999999999999


Q ss_pred             CC
Q 014354          174 PG  175 (426)
Q Consensus       174 PG  175 (426)
                      |-
T Consensus       483 pT  484 (559)
T COG4988         483 PT  484 (559)
T ss_pred             Cc
Confidence            94

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.63  E-value=2.4e-07  Score=87.20  Aligned_cols=106  Identities=16%  Similarity=0.241  Sum_probs=73.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----cccccccccc------cch---------------
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFAAN------IDI---------------  120 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~t~------i~~---------------  120 (426)
                      .++.+++|+|++|||||||++.|.|...+..+.+.+.+.++     .+...++...      ..+               
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~   83 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL   83 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence            46778999999999999999999998777776665544321     1111111100      000               


Q ss_pred             -----hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 -----r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                           .....+.++++.+++.+...  .....+|+|+++++.+++++..+++++|+|.|
T Consensus        84 ~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~llilDEP  140 (223)
T TIGR03771        84 RRPCVADFAAVRDALRRVGLTELAD--RPVGELSGGQRQRVLVARALATRPSVLLLDEP  140 (223)
T ss_pred             cCCcHHHHHHHHHHHHHhCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                 01123456678888764322  22345899999999999999999999999999

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=3e-07  Score=89.76  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=80.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc--c---chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN--I---DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~--i---~~r  121 (426)
                      ....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..            +...++...  +   .++
T Consensus        22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~  101 (283)
T PRK13636         22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVY  101 (283)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHH
Confidence            45566667788999999999999999999999998777777766554321            111111110  0   001


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +                ...+.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|
T Consensus       102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP  168 (283)
T PRK13636        102 QDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK--DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP  168 (283)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1                12345668888876422  223446899999999999999999999999999

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.62  E-value=2.8e-07  Score=93.49  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccc-------ccccc---ccc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-------LPFAA---NID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~-------~~~~t---~i~-  119 (426)
                      ..+.+....++.+++|+|++|+||||||+.|.|...+..+.+.+.+.+..        +..       +|+.+   |+. 
T Consensus        35 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~  114 (377)
T PRK11607         35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAF  114 (377)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHH
Confidence            44556666788899999999999999999999998887777665443210        111       11111   111 


Q ss_pred             -hhh--------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 -IRD--------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 -~r~--------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       .+.        ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~--~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP  176 (377)
T PRK11607        115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAK--RKPHQLSGGQRQRVALARSLAKRPKLLLLDEP  176 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence             110        113456788888764322  22346899999999999999999999999999

>PRK10908 cell division protein FtsE; Provisional

Probab=98.62  E-value=1.5e-07  Score=88.30  Aligned_cols=115  Identities=11%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..             +...++...+    .++
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   97 (222)
T PRK10908         18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY   97 (222)
T ss_pred             EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHH
Confidence            44556667788999999999999999999999998777777665443210             1111111110    011


Q ss_pred             hhH----------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 DTI----------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~~~----------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +.+                .+.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (222)
T PRK10908         98 DNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA--KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT  165 (222)
T ss_pred             HHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh--hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            111                234567778775421  1223468999999999999999999999999994

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.62  E-value=4.2e-07  Score=87.01  Aligned_cols=115  Identities=14%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----c--------------ccccccccc---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----P--------------AVMTLPFAA---  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----~--------------~v~~~~~~t---  116 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+     .              .+...++..   
T Consensus        19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   98 (253)
T TIGR02323        19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDG   98 (253)
T ss_pred             eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccc
Confidence            445566677888999999999999999999999987777776664422     0              011111111   


Q ss_pred             ---------ccch-----------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          117 ---------NIDI-----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       117 ---------~i~~-----------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                               ++..           .....+.++++.+++... -.-.....||+|+++++.+++++..+++++|+|.|
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        99 LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChh-hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                     1100           001234556788887421 12223346899999999999999999999999999

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.62  E-value=3.6e-07  Score=84.83  Aligned_cols=110  Identities=14%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.          .+...++...+   .+.+.+ 
T Consensus        24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~  103 (207)
T cd03369          24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD  103 (207)
T ss_pred             ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhc
Confidence            4455666678889999999999999999999998877777666544321          01111111100   011111 


Q ss_pred             -----HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          125 -----RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       125 -----~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                           ...++...+.+      -.....||+++++++.+++++..+++++|+|.|
T Consensus       104 ~~~~~~~~~~~~~l~~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP  152 (207)
T cd03369         104 PFDEYSDEEIYGALRV------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA  152 (207)
T ss_pred             ccCCCCHHHHHHHhhc------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence                 11222333332      123346899999999999999999999999999

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.62  E-value=5.1e-07  Score=83.42  Aligned_cols=115  Identities=14%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccc----ccchhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAA----NIDIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t----~i~~r~~--  123 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..         +...+...    ...+++.  
T Consensus        17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~   96 (200)
T PRK13540         17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCL   96 (200)
T ss_pred             EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHH
Confidence            45556667788999999999999999999999998887777776543211         11111110    0111111  


Q ss_pred             ---------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               ..+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~  155 (200)
T PRK13540         97 YDIHFSPGAVGITELCRLFSLEHL--IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL  155 (200)
T ss_pred             HHHhcCcchHHHHHHHHHcCCchh--hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                     134667788777532  11223458999999999999999999999999993

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.62  E-value=3.4e-07  Score=85.08  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------ccccccc-------c---ccchh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFA-------A---NIDIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------v~~~~~~-------t---~i~~r  121 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..       +...++.       +   ++...
T Consensus        18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~   97 (207)
T PRK13539         18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW   97 (207)
T ss_pred             EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHH
Confidence            45566667788999999999999999999999998777777665443210       1111111       1   11000


Q ss_pred             ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ....+.++++.+++....  -.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        98 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  155 (207)
T PRK13539         98 AAFLGGEELDIAAALEAVGLAPLA--HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT  155 (207)
T ss_pred             HHhcCCcHHHHHHHHHHcCCHHHH--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                  011246678888875421  1223468999999999999999999999999994

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=3.7e-07  Score=88.46  Aligned_cols=115  Identities=10%  Similarity=0.038  Sum_probs=77.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-----ccchhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-----NIDIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-----~i~~r~~  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++..     ...+++.
T Consensus        25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en  104 (271)
T PRK13632         25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDD  104 (271)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHH
Confidence            44555666788899999999999999999999998777666655443210          11111111     0001111


Q ss_pred             ----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                      ..+.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~  170 (271)
T PRK13632        105 IAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL--DKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST  170 (271)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                            1234567777775321  1222468999999999999999999999999993

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.61  E-value=3.8e-07  Score=87.30  Aligned_cols=114  Identities=13%  Similarity=0.033  Sum_probs=76.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------------------cccccccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------------------AVMTLPFA  115 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------------------~v~~~~~~  115 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.                       .+...++.
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~   95 (252)
T TIGR03005        16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS   95 (252)
T ss_pred             EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecC
Confidence            4455666778889999999999999999999998877766665543211                       01111111


Q ss_pred             c----------ccchh-----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          116 A----------NIDIR-----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       116 t----------~i~~r-----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .          ++...           ....+.++++.+++...  .-.....+|+|+++++.+++++..+++++|+|.|
T Consensus        96 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  173 (252)
T TIGR03005        96 FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK--ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV  173 (252)
T ss_pred             cccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH--hhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1          01010           01124566778877532  1122345899999999999999999999999999

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.61  E-value=6.5e-07  Score=84.15  Aligned_cols=116  Identities=13%  Similarity=0.079  Sum_probs=76.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccc------ccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAA------NID  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t------~i~  119 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..             +...++..      ...
T Consensus        21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~t  100 (228)
T cd03257          21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMT  100 (228)
T ss_pred             ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCC
Confidence            45566677788999999999999999999999998777777666443211             11111111      000


Q ss_pred             hhhhH----------------H--HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          120 IRDTI----------------R--YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       120 ~r~~~----------------~--~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++.+                .  ..++++.+++... -.-.....||+|+++++.+++++..+++++|+|.|=
T Consensus       101 v~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  173 (228)
T cd03257         101 IGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE-VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT  173 (228)
T ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh-HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            01100                1  1245667776321 011222458999999999999999999999999993

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.61  E-value=3.6e-07  Score=87.59  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec--------cCccccc-ccccc--ccchh---hhH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN--------LDPAVMT-LPFAA--NIDIR---DTI  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~--------~d~~v~~-~~~~t--~i~~r---~~~  124 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+        .++.... .+.+.  .+...   ...
T Consensus        20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~   99 (251)
T PRK09544         20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKE   99 (251)
T ss_pred             EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHH
Confidence            3445566678889999999999999999999998776666544322        1221100 00000  00000   012


Q ss_pred             HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+.++++.+++...  +-.....||+|+++++.++.++..+++++|+|.|=
T Consensus       100 ~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  148 (251)
T PRK09544        100 DILPALKRVQAGHL--IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT  148 (251)
T ss_pred             HHHHHHHHcCChHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            34566778876532  11233468999999999999999999999999993

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.61  E-value=2.5e-07  Score=97.17  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=79.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccc----hhh------------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID----IRD------------  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~----~r~------------  122 (426)
                      ....+....++-+|+|||.+|+||||||+.|.|...+..+.+.....- .+...++.+..+    +.+            
T Consensus        19 ~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~   97 (530)
T COG0488          19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-RVGYLSQEPPLDPEKTVLDYVIEGFGELREL   97 (530)
T ss_pred             ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-eEEEeCCCCCcCCCccHHHHHHhhhHHHHHH
Confidence            455666777888999999999999999999999998877665554321 111112111110    000            


Q ss_pred             ----------------------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCE
Q 014354          123 ----------------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDY  168 (426)
Q Consensus       123 ----------------------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~  168 (426)
                                                        ..++..++..+|+.+.   -..+..||+|.+-++.+|+++...+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSGG~r~Rv~LA~aL~~~pDl  174 (530)
T COG0488          98 LAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSGGWRRRVALARALLEEPDL  174 (530)
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence                                              1233445556666654   334456999999999999999999999


Q ss_pred             EEEcCCC-ccc
Q 014354          169 VLVDTPG-QIE  178 (426)
Q Consensus       169 ~liDTPG-i~e  178 (426)
                      +++|.|- +.+
T Consensus       175 LLLDEPTNHLD  185 (530)
T COG0488         175 LLLDEPTNHLD  185 (530)
T ss_pred             EEEcCCCcccC
Confidence            9999994 444

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=4.2e-07  Score=87.08  Aligned_cols=114  Identities=12%  Similarity=0.096  Sum_probs=76.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~~  123 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+..           +...++...+    .+.+.
T Consensus        21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~en  100 (255)
T PRK11300         21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIEN  100 (255)
T ss_pred             EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHH
Confidence            44555666788999999999999999999999998777776665443210           1101111100    01110


Q ss_pred             -------------------------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEc
Q 014354          124 -------------------------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVD  172 (426)
Q Consensus       124 -------------------------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liD  172 (426)
                                                     ..+.++++.+++...  .-.....+|+|+++++.++.++..+++++|+|
T Consensus       101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllD  178 (255)
T PRK11300        101 LLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH--ANRQAGNLAYGQQRRLEIARCMVTQPEILMLD  178 (255)
T ss_pred             HHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence                                           123445667776432  12233458999999999999999999999999


Q ss_pred             CC
Q 014354          173 TP  174 (426)
Q Consensus       173 TP  174 (426)
                      .|
T Consensus       179 EP  180 (255)
T PRK11300        179 EP  180 (255)
T ss_pred             CC
Confidence            99

>cd01858 NGP_1 NGP-1

Probab=98.61  E-value=2.4e-07  Score=82.22  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL  273 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  273 (426)
                      ..+|++++|+|+........     ..+...+.  ..++|.|+|+||+|+..+.....|...+.                
T Consensus         7 ~~aD~il~VvD~~~p~~~~~-----~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----------------   65 (157)
T cd01858           7 DSSDVVIQVLDARDPMGTRC-----KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILS----------------   65 (157)
T ss_pred             hhCCEEEEEEECCCCccccC-----HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHh----------------
Confidence            34799999999987654322     11222232  23589999999999987654433433332                


Q ss_pred             HHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       274 ~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                               +.+.+ .++++||+.|.|+..|+++|...
T Consensus        66 ---------~~~~~-~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          66 ---------KEYPT-IAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             ---------cCCcE-EEEEeeccccccHHHHHHHHHHH
Confidence                     11222 26899999999999999988664

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.61  E-value=4.8e-08  Score=83.25  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+++++|--||||||||..|.+....+            +   ..+..+.                      ..++.
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h------------l---tpT~GFn----------------------~k~v~   57 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH------------L---TPTNGFN----------------------TKKVE   57 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh------------c---cccCCcc----------------------eEEEe
Confidence            567899999999999999999999876432            1   1111110                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhH-HHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM-LYACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~-l~~~~  225 (426)
                                     ..+.+.+.+||..|+....      .....++  +..|.++||||+...-. .+..+.. ...+.
T Consensus        58 ---------------~~g~f~LnvwDiGGqr~IR------pyWsNYy--envd~lIyVIDS~D~kr-feE~~~el~ELle  113 (185)
T KOG0074|consen   58 ---------------YDGTFHLNVWDIGGQRGIR------PYWSNYY--ENVDGLIYVIDSTDEKR-FEEISEELVELLE  113 (185)
T ss_pred             ---------------ecCcEEEEEEecCCccccc------hhhhhhh--hccceEEEEEeCCchHh-HHHHHHHHHHHhh
Confidence                           0244789999999985541      1111222  33689999999643211 1111111 12222


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ..+-..+|+.|..||-|+........+...+.   -+               +.-.+    ...+-.+||++++|+.+-.
T Consensus       114 eeKl~~vpvlIfankQdlltaa~~eeia~kln---l~---------------~lrdR----swhIq~csals~eg~~dg~  171 (185)
T KOG0074|consen  114 EEKLAEVPVLIFANKQDLLTAAKVEEIALKLN---LA---------------GLRDR----SWHIQECSALSLEGSTDGS  171 (185)
T ss_pred             hhhhhccceeehhhhhHHHhhcchHHHHHhcc---hh---------------hhhhc----eEEeeeCccccccCccCcc
Confidence            23356789999999999887654433322111   00               00001    1347788999999998877


Q ss_pred             HHHHH
Q 014354          306 KAVEE  310 (426)
Q Consensus       306 ~~l~~  310 (426)
                      +++..
T Consensus       172 ~wv~s  176 (185)
T KOG0074|consen  172 DWVQS  176 (185)
T ss_pred             hhhhc
Confidence            77764

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=3.3e-07  Score=92.31  Aligned_cols=163  Identities=18%  Similarity=0.273  Sum_probs=100.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+++.+|+++|-+|+||||=|-.|+-+....+-++.|.++|+--+    ++ |. .-++.++.+ ..++     |  +..
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRs----GA-vE-QLrtHv~rl-~~l~-----~--~~v  440 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS----GA-VE-QLRTHVERL-SALH-----G--TMV  440 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhh----hH-HH-HHHHHHHHH-HHhc-----c--chh
Confidence            457899999999999999999999999999999999999885321    11 10 001111111 1110     0  000


Q ss_pred             ccccc------cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhh
Q 014354          146 NLFTT------KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN  219 (426)
Q Consensus       146 ~~ls~------~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~  219 (426)
                      .+|..      ..--+.++..+...++++++|||+|-..-  ...+...+........+|.|+||=-|--|-+..+....
T Consensus       441 ~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~--~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~  518 (587)
T KOG0781|consen  441 ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHN--NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKK  518 (587)
T ss_pred             HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccC--ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHH
Confidence            01100      11122345566788999999999996442  33344555555566789999999888666555443322


Q ss_pred             HHHHHHHHhhcc---CCeEEEEecCCCCChH
Q 014354          220 MLYACSILYKTR---LPLVLAFNKTDVAQHE  247 (426)
Q Consensus       220 ~l~~~~~l~~~~---~P~IlVlNKiDl~~~~  247 (426)
                      .-   ..+....   .-.-|+++|+|.+...
T Consensus       519 fn---~al~~~~~~r~id~~~ltk~dtv~d~  546 (587)
T KOG0781|consen  519 FN---RALADHSTPRLIDGILLTKFDTVDDK  546 (587)
T ss_pred             HH---HHHhcCCCccccceEEEEeccchhhH
Confidence            22   2233333   3356899999988764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.61  E-value=5.8e-07  Score=86.24  Aligned_cols=117  Identities=10%  Similarity=0.040  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccccc----CCceEEEeccCc--------ccccccccc----------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDP--------AVMTLPFAA----------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~----~~~~~~i~~~d~--------~v~~~~~~t----------  116 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+    ..+.+.+.+.+.        .+...++..          
T Consensus        19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~   98 (254)
T PRK10418         19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTM   98 (254)
T ss_pred             ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccH
Confidence            4456666778889999999999999999999998766    555555433221        011111110          


Q ss_pred             --ccch--------hhhHHHHHHHHHcCCCCCCC-cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          117 --NIDI--------RDTIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       117 --~i~~--------r~~~~~~~~~~~~~l~~ng~-i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        ++..        .....+.++++.+++.+... +-.....+|+|+++++.+++++..+++++|+|.|-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt  168 (254)
T PRK10418         99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT  168 (254)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              0000        01123456788888765211 11223458999999999999999999999999994

>TIGR00092 GTP-binding protein YchF

Probab=98.60  E-value=1.4e-07  Score=94.43  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ..++|+|.||+|||||+|+|++....            .+.++|++|                  +.||.|++.-   -.
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~------------~~a~ypftT------------------i~p~~g~v~v---~d   49 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGN------------EAANPPFTT------------------IEPNAGVVNP---SD   49 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCcc------------ccCCCCCCC------------------CCCceeEEEe---ch
Confidence            57899999999999999999998741            145667775                  2334444331   01


Q ss_pred             ccHHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          150 TKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       150 ~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      .-++++..+.... .....+.++|.||+......+ .++..+...++  .+|++++||+++.
T Consensus        50 ~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir--~~d~l~hVvr~f~  109 (368)
T TIGR00092        50 PRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIR--EVDIIQHVVRCFE  109 (368)
T ss_pred             hHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHH--hCCEEEEEEeCCC
Confidence            1122222221111 122478999999998753222 24555555443  4699999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.60  E-value=1.8e-07  Score=85.76  Aligned_cols=114  Identities=16%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------------cccccc---ccc
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------------VMTLPF---AAN  117 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------------v~~~~~---~t~  117 (426)
                      ...+.....+-+|.|+|.+|||||||+|.|.|.....++.+.|.+.|-.                   ....|.   ..|
T Consensus        23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieEN  102 (263)
T COG1101          23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN  102 (263)
T ss_pred             hcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHH
Confidence            3444555677899999999999999999999999999999999887611                   100000   001


Q ss_pred             cchh----------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354          118 IDIR----------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT  173 (426)
Q Consensus       118 i~~r----------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDT  173 (426)
                      +.+.                .+-.+.+.+..++++-..-.-..+.+||+|++|.+.++.+....++++|+|.
T Consensus       103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE  174 (263)
T COG1101         103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE  174 (263)
T ss_pred             HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence            1110                0111233455666554444556667899999999999999999999999996

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.60  E-value=1.8e-07  Score=88.93  Aligned_cols=114  Identities=12%  Similarity=0.088  Sum_probs=78.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------ccccccccc---------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAAN---------  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~---------  117 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..            +...++...         
T Consensus        17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~   96 (240)
T PRK09493         17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALE   96 (240)
T ss_pred             eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHH
Confidence            44556666788899999999999999999999998777777666543211            111111110         


Q ss_pred             -cchh-----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          118 -IDIR-----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       118 -i~~r-----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       +...           ....+.++++.+++.+..  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  163 (240)
T PRK09493         97 NVMFGPLRVRGASKEEAEKQARELLAKVGLAERA--HHYPSELSGGQQQRVAIARALAVKPKLMLFDEP  163 (240)
T ss_pred             HHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH--hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence             1000           011235677888875421  122345899999999999999999999999999

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=4.3e-07  Score=87.73  Aligned_cols=115  Identities=17%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccc-------c---cc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFA-------A---NI  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~-------t---~i  118 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+.          .+...++.       +   ++
T Consensus        27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l  106 (265)
T PRK10575         27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELV  106 (265)
T ss_pred             EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHH
Confidence            4556666778899999999999999999999999777766665544221          01111111       0   01


Q ss_pred             ch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 DI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 ~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ..              .....+.++++.+++...  +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt  175 (265)
T PRK10575        107 AIGRYPWHGALGRFGAADREKVEEAISLVGLKPL--AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT  175 (265)
T ss_pred             HhCcccccccccCCCHHHHHHHHHHHHHcCCHHH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            00              001134556777777532  12223458999999999999999999999999993

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.60  E-value=1.7e-07  Score=84.07  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccccc---chhhhHHHHHHHHHcCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI---DIRDTIRYKEVMKQFNL  135 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i---~~r~~~~~~~~~~~~~l  135 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+. ..+...++...+   .+.+.+         .+
T Consensus        17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~~~~tv~~nl---------~~   86 (166)
T cd03223          17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYLPLGTLREQL---------IY   86 (166)
T ss_pred             eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCccccccHHHHh---------hc
Confidence            44556667788899999999999999999999998777776655321 112222222111   112211         11


Q ss_pred             CCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       136 ~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .       ....||+++++++.+++++..+++++++|.|=
T Consensus        87 ~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          87 P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            0       12458999999999999999999999999993

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.60  E-value=6.3e-07  Score=83.72  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------ccccccccc----cchhhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAAN----IDIRDT----  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------v~~~~~~t~----i~~r~~----  123 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..       +..+++...    ..+.+.    
T Consensus        27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~  106 (214)
T PRK13543         27 FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFL  106 (214)
T ss_pred             eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHH
Confidence            45566667788899999999999999999999987777666655432210       111111110    011111    


Q ss_pred             ---------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               ....+++..+++...  .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (214)
T PRK13543        107 CGLHGRRAKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY  165 (214)
T ss_pred             HHhcCCcHHHHHHHHHHHcCChhh--ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                     122456777776532  22233468999999999999999999999999994

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=4.2e-07  Score=88.96  Aligned_cols=116  Identities=16%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------------cccccccccc---c--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------------AVMTLPFAAN---I--  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------------~v~~~~~~t~---i--  118 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.               .+...++...   +  
T Consensus        27 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  106 (289)
T PRK13645         27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQE  106 (289)
T ss_pred             eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhh
Confidence            4455666778889999999999999999999999877777666543221               0111121110   0  


Q ss_pred             chhhh----------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 DIRDT----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 ~~r~~----------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+++.                ..+.++++.+++.. +-.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       107 tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt  178 (289)
T PRK13645        107 TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT  178 (289)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            01110                12335677777631 1111233469999999999999999999999999993

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=4.3e-07  Score=88.05  Aligned_cols=114  Identities=16%  Similarity=0.104  Sum_probs=77.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccc-------cc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAA-------NI-  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t-------~i-  118 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..            +...++..       .+ 
T Consensus        17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~   96 (271)
T PRK13638         17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDID   96 (271)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHH
Confidence            45556667788899999999999999999999998777777665443310            11112111       01 


Q ss_pred             ---ch--h----h----hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          119 ---DI--R----D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       119 ---~~--r----~----~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                         ..  +    .    ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP  163 (271)
T PRK13638         97 SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR--HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP  163 (271)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh--cCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence               00  0    0    01234567777765321  122346899999999999999999999999999

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.60  E-value=4.6e-07  Score=87.51  Aligned_cols=115  Identities=12%  Similarity=0.070  Sum_probs=78.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------ccccccc-------c---cc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFA-------A---NI  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~-------t---~i  118 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++.       +   ++
T Consensus        23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~  102 (265)
T PRK10253         23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV  102 (265)
T ss_pred             eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHH
Confidence            55666777788999999999999999999999998777776665443210          1111111       0   01


Q ss_pred             ch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 DI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 ~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ..              .....+.++++.+++...  .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  171 (265)
T PRK10253        103 ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL--ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT  171 (265)
T ss_pred             HhCcccccccccCCCHHHHHHHHHHHHHcCCHHH--hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            00              011134566777777532  12233469999999999999999999999999993

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.60  E-value=1.3e-06  Score=77.56  Aligned_cols=128  Identities=15%  Similarity=0.124  Sum_probs=87.1

Q ss_pred             hHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC-----------
Q 014354           38 KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----------  106 (426)
Q Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d-----------  106 (426)
                      +..+++.++...-        ..++++...++.+.+|+|.+||||||||++|.+...+..+.+.....+           
T Consensus         9 V~~lsk~Yg~~~g--------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE   80 (258)
T COG4107           9 VSGLSKLYGPGKG--------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE   80 (258)
T ss_pred             ehhhhhhhCCCcC--------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence            3455666655443        556777788899999999999999999999999988876665443322           


Q ss_pred             -----------------ccc---cccccccccch-------hh--hH--HHHHHHHHcCCCCCCCcccccccccccHHHH
Q 014354          107 -----------------PAV---MTLPFAANIDI-------RD--TI--RYKEVMKQFNLGPNGGILTSLNLFTTKFDEV  155 (426)
Q Consensus       107 -----------------~~v---~~~~~~t~i~~-------r~--~~--~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~  155 (426)
                                       |.-   .....+.||+.       |+  .+  ...+|++++.+.+..- ----+.||++|+++
T Consensus        81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri-DD~PrtFSGGMqQR  159 (258)
T COG4107          81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI-DDLPRTFSGGMQQR  159 (258)
T ss_pred             HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc-cCcccccchHHHHH
Confidence                             110   01111223321       11  11  2346788888776522 11123589999999


Q ss_pred             HHHHHHHhcCCCEEEEcCC
Q 014354          156 ISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       156 ~~~~~~~~~~~~~~liDTP  174 (426)
                      ..+++.+-..+.++|+|.|
T Consensus       160 LQiARnLVt~PrLvfMDEP  178 (258)
T COG4107         160 LQIARNLVTRPRLVFMDEP  178 (258)
T ss_pred             HHHHHHhccCCceEEecCC
Confidence            9999999999999999999

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.59  E-value=5.3e-08  Score=88.03  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ....++++|.||+|||||+|+|++....
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~  143 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRAC  143 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccc
Confidence            4578999999999999999999987643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.59  E-value=6.5e-07  Score=85.52  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------------ccccccccccc--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------------AVMTLPFAANI--  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------------~v~~~~~~t~i--  118 (426)
                      ..+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.+.                  .+...++...+  
T Consensus        19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~   98 (250)
T PRK11264         19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFP   98 (250)
T ss_pred             eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCC
Confidence            4556666778889999999999999999999998777666665433210                  01111111100  


Q ss_pred             --chhh-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 --DIRD-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 --~~r~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        .+.+                 ...+.++++.+++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt  172 (250)
T PRK11264         99 HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT  172 (250)
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              0111                 01234567777775421  1223468999999999999999999999999993

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=4e-07  Score=89.02  Aligned_cols=114  Identities=12%  Similarity=0.074  Sum_probs=78.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc---cc--c
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA---NI--D  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t---~i--~  119 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++..   .+  .
T Consensus        23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~t  102 (286)
T PRK13646         23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDT  102 (286)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhh
Confidence            55566667788999999999999999999999998887777766543310              11112111   00  0


Q ss_pred             hhh----------------hHHHHHHHHHcCCC-CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 IRD----------------TIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ~r~----------------~~~~~~~~~~~~l~-~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +.+                ..++.++++.+++. ....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       103 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~--~~~~~LSgGq~qrv~laraL~~~p~illlDEP  172 (286)
T PRK13646        103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS--QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEP  172 (286)
T ss_pred             HHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--CCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            011                11234667788875 2111  22335899999999999999999999999999

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=5.9e-08  Score=92.62  Aligned_cols=119  Identities=17%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CEEEEcCCCcccccchhchHHHHHHH-HHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          167 DYVLVDTPGQIEIFTWSASGAIITEA-FAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~~~~~l~~~-~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+-|+|.||+.          +++.. +.. +--|.++++|-+.+.+ ++...+..+.+..+|.-  +-++|+-||+|++
T Consensus       126 HVSfVDCPGHD----------iLMaTMLnGaAvmDaalLlIA~NEsC-PQPQTsEHLaaveiM~L--khiiilQNKiDli  192 (466)
T KOG0466|consen  126 HVSFVDCPGHD----------ILMATMLNGAAVMDAALLLIAGNESC-PQPQTSEHLAAVEIMKL--KHIIILQNKIDLI  192 (466)
T ss_pred             EEEeccCCchH----------HHHHHHhcchHHhhhhhhhhhcCCCC-CCCchhhHHHHHHHhhh--ceEEEEechhhhh
Confidence            56799999983          23222 221 2247788888776654 33333444544444432  2457889999999


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET  318 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~  318 (426)
                      +.....+..+.+..|...                    .....+|+||+||--+.+++.+.++|.+.+|.....
T Consensus       193 ~e~~A~eq~e~I~kFi~~--------------------t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQG--------------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             hHHHHHHHHHHHHHHHhc--------------------cccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence            988777777766655432                    334668999999999999999999999988775443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.59  E-value=3.4e-07  Score=83.01  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCC
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN  138 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~n  138 (426)
                      ....+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..  ..+... ...+..+.+  +.....+-++
T Consensus        16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~~-~~~~~~i~~--~~q~~~~~~~   90 (178)
T cd03229          16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT--DLEDEL-PPLRRRIGM--VFQDFALFPH   90 (178)
T ss_pred             EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc--ccchhH-HHHhhcEEE--EecCCccCCC
Confidence            34445566788899999999999999999999998777777776543321  110000 000000000  0000001111


Q ss_pred             CCccccccc-ccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          139 GGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       139 g~i~~~~~~-ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ..+.-.+.+ +|+|+++++.+++++..+++++++|.|=
T Consensus        91 ~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          91 LTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             CCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            111111112 8999999999999999999999999993

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.59  E-value=6.7e-07  Score=96.86  Aligned_cols=151  Identities=15%  Similarity=0.088  Sum_probs=81.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc-CC-ceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS-RN-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~-~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ++.+|+|+|++||||||++.+|.+.... .+ .++.++..|+.-        +  .-.-......+.+++...  ++.  
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--------i--gA~eQL~~~a~~~gvpv~--~~~--  249 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--------I--GALEQLRIYGRILGVPVH--AVK--  249 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--------h--HHHHHHHHHHHhCCCCcc--ccC--
Confidence            4679999999999999999999998743 33 477787766311        0  000111122233332111  011  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                           .-......+. ...+++++||||||....  ...+...+........++-+++|+|+.....  .+    ..+..
T Consensus       250 -----~~~~l~~al~-~~~~~D~VLIDTAGRs~~--d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~--~l----~~i~~  315 (767)
T PRK14723        250 -----DAADLRFALA-ALGDKHLVLIDTVGMSQR--DRNVSEQIAMLCGVGRPVRRLLLLNAASHGD--TL----NEVVH  315 (767)
T ss_pred             -----CHHHHHHHHH-HhcCCCEEEEeCCCCCcc--CHHHHHHHHHHhccCCCCeEEEEECCCCcHH--HH----HHHHH
Confidence                 1122222222 245689999999997543  1222222222222344678899999975322  11    11111


Q ss_pred             HHhhc-c-CCeEEEEecCCCCCh
Q 014354          226 ILYKT-R-LPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~-~-~P~IlVlNKiDl~~~  246 (426)
                      ..... . -+.=+|++|.|-...
T Consensus       316 ~f~~~~~~~i~glIlTKLDEt~~  338 (767)
T PRK14723        316 AYRHGAGEDVDGCIITKLDEATH  338 (767)
T ss_pred             HHhhcccCCCCEEEEeccCCCCC
Confidence            11111 1 245688999997764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.59  E-value=4.4e-07  Score=84.06  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccc---cCCceEEEeccCccc---------cccccccc----cchhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~---~~~~~~~i~~~d~~v---------~~~~~~t~----i~~r~  122 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...   +..+.+.+.+.+...         ...++...    ..+++
T Consensus        23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~  102 (202)
T cd03233          23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE  102 (202)
T ss_pred             eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHH
Confidence            344555667888999999999999999999999976   566766665543211         11111110    01222


Q ss_pred             hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+.+..   ...      .-.....||+++++++.+++++..+++++|+|.|=
T Consensus       103 ~l~~~~---~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt  146 (202)
T cd03233         103 TLDFAL---RCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST  146 (202)
T ss_pred             HHhhhh---hhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence            221110   010      11222358999999999999999999999999993

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.59  E-value=1.2e-07  Score=83.20  Aligned_cols=82  Identities=15%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCC
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG  139 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng  139 (426)
                      .+.+....++.+++|+|++|+|||||++.|.|...+..+.+.+.+.    ..                           -
T Consensus        17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~---------------------------i   65 (144)
T cd03221          17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VK---------------------------I   65 (144)
T ss_pred             EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EE---------------------------E
Confidence            3445556678899999999999999999999998776666554321    00                           0


Q ss_pred             CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++.   .+|.++++++.+++++..+++++++|.|=
T Consensus        66 ~~~~---~lS~G~~~rv~laral~~~p~illlDEP~   98 (144)
T cd03221          66 GYFE---QLSGGEKMRLALAKLLLENPNLLLLDEPT   98 (144)
T ss_pred             EEEc---cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            1111   17999999999999999999999999993

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.59  E-value=3.5e-07  Score=98.29  Aligned_cols=119  Identities=12%  Similarity=0.079  Sum_probs=82.8

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI  124 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~  124 (426)
                      ...+.+...+++.+|+|+|++|+|||||++.|+|...+.++.+.+.+.+-          .+...|+.+.+   .+++.+
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI  435 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANV  435 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHH
Confidence            35666777889999999999999999999999999999888887766541          12233333321   133333


Q ss_pred             ---------HHHHHHHHcCCC------CC---CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          125 ---------RYKEVMKQFNLG------PN---GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       125 ---------~~~~~~~~~~l~------~n---g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                               .+.++++..++.      |+   .-+...-..||+|++|++.+++++.++++++++|.|--
T Consensus       436 ~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts  505 (592)
T PRK10790        436 TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA  505 (592)
T ss_pred             HhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence                     233445555433      11   11111223489999999999999999999999999964

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.59  E-value=2.1e-06  Score=87.05  Aligned_cols=148  Identities=19%  Similarity=0.213  Sum_probs=81.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc----CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~----~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ++.+|+++|++|+||||.+..|......    .+..+.++..|+.-    .++      ........+.+++.    +..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R----~aa------~eQL~~~a~~lgvp----v~~  238 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR----IGA------KKQIQTYGDIMGIP----VKA  238 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc----HHH------HHHHHHHhhcCCcc----eEe
Confidence            4579999999999999999999976542    46788888777421    011      01111112223321    111


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCC-cEEEEEEeCCCCCCchhhhhhHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP-TVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~-d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                           ..........+. ...+++++||||||.....  ...-..+.+.+....+ .-+++|+|++.+.....       
T Consensus       239 -----~~~~~~l~~~L~-~~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-------  303 (388)
T PRK12723        239 -----IESFKDLKEEIT-QSKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-------  303 (388)
T ss_pred             -----eCcHHHHHHHHH-HhCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-------
Confidence                 111222222222 2367999999999975421  1011223333333333 36889999987643321       


Q ss_pred             HHHHHhhcc--CCeEEEEecCCCCCh
Q 014354          223 ACSILYKTR--LPLVLAFNKTDVAQH  246 (426)
Q Consensus       223 ~~~~l~~~~--~P~IlVlNKiDl~~~  246 (426)
                        ..+.+..  -+.=+|++|.|-...
T Consensus       304 --~~~~~~~~~~~~~~I~TKlDet~~  327 (388)
T PRK12723        304 --EIFHQFSPFSYKTVIFTKLDETTC  327 (388)
T ss_pred             --HHHHHhcCCCCCEEEEEeccCCCc
Confidence              1122221  256789999997664

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=5.3e-07  Score=87.31  Aligned_cols=114  Identities=14%  Similarity=0.087  Sum_probs=78.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc-------cc---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA-------NI---  118 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t-------~i---  118 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..          +..+++..       ++   
T Consensus        25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~  104 (269)
T PRK13648         25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD  104 (269)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHH
Confidence            44555666788899999999999999999999998777777766553310          11111111       00   


Q ss_pred             -c--hh--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          119 -D--IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       119 -~--~r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       .  ..        ....+.++++.+++.+...  .....+|+|+++++.+++++..+++++|+|.|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~laral~~~p~lllLDEP  169 (269)
T PRK13648        105 VAFGLENHAVPYDEMHRRVSEALKQVDMLERAD--YEPNALSGGQKQRVAIAGVLALNPSVIILDEA  169 (269)
T ss_pred             HHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence             0  00        0112456688888764322  22235899999999999999999999999999

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.59  E-value=5.1e-07  Score=84.60  Aligned_cols=114  Identities=16%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~~  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..           +...++...+    .+++.
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~   95 (222)
T cd03224          16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEEN   95 (222)
T ss_pred             eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHH
Confidence            44555667788999999999999999999999998777777766543210           1111211110    01111


Q ss_pred             H--------------HHHHHHHHc-CCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 I--------------RYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ~--------------~~~~~~~~~-~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +              .+.++++.+ ++..  ..-.....+|+|+++++.+++++..+++++|+|.|
T Consensus        96 l~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  159 (222)
T cd03224          96 LLLGAYARRRAKRKARLERVYELFPRLKE--RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP  159 (222)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHhhhh--hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            1              123345555 2322  12233346899999999999999999999999999

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.8e-07  Score=90.61  Aligned_cols=142  Identities=17%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ...++...|+-||+...|||||-.+|+.-.-..+...+.          .|. .||....      -+..|+.-|.+.+-
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~----------kyd-eID~APE------EkaRGITIn~aHve  111 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFK----------KYD-EIDKAPE------EKARGITINAAHVE  111 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccc----------cHh-hhhcChh------hhhccceEeeeeee
Confidence            345566799999999999999999999876554432211          111 0110000      11233333333221


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      .    .             -....|--+|.||+.++         +..++.. +.-|.+|+||.++.+.-+++     +.
T Consensus       112 Y----e-------------Ta~RhYaH~DCPGHADY---------IKNMItGaaqMDGaILVVaatDG~MPQT-----rE  160 (449)
T KOG0460|consen  112 Y----E-------------TAKRHYAHTDCPGHADY---------IKNMITGAAQMDGAILVVAATDGPMPQT-----RE  160 (449)
T ss_pred             e----e-------------ccccccccCCCCchHHH---------HHHhhcCccccCceEEEEEcCCCCCcch-----HH
Confidence            1    1             12357788999999885         2222222 34589999999999999988     44


Q ss_pred             HHHHHhhccCCeEE-EEecCCCCChHhHHHHH
Q 014354          223 ACSILYKTRLPLVL-AFNKTDVAQHEFALEWM  253 (426)
Q Consensus       223 ~~~~l~~~~~P~Il-VlNKiDl~~~~~~~~~~  253 (426)
                      .+-+.+|.+++.|+ .+||.|++...+..++.
T Consensus       161 HlLLArQVGV~~ivvfiNKvD~V~d~e~leLV  192 (449)
T KOG0460|consen  161 HLLLARQVGVKHIVVFINKVDLVDDPEMLELV  192 (449)
T ss_pred             HHHHHHHcCCceEEEEEecccccCCHHHHHHH
Confidence            45567889988665 59999999666544443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.59  E-value=1.1e-06  Score=84.84  Aligned_cols=151  Identities=15%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+++++|++|+|||||+..|.+.....+..+.++..|+.-    ...    ..  ......+.+++.    +..    
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r----i~~----~~--ql~~~~~~~~~~----~~~----  135 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR----IGT----VQ--QLQDYVKTIGFE----VIA----  135 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC----HHH----HH--HHHHHhhhcCce----EEe----
Confidence            567999999999999999999998876556677777665321    000    00  000111111111    000    


Q ss_pred             ccccHHHHHHHHHHH--hcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERR--ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                       ......+...+..+  ..+++++||||||....  ....-..+.+.+....++.+++|+++.......      ..++.
T Consensus       136 -~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~------~~~~~  206 (270)
T PRK06731        136 -VRDEAAMTRALTYFKEEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDM------IEIIT  206 (270)
T ss_pred             -cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH------HHHHH
Confidence             01111111112111  24689999999998543  122223334444445578899999986543221      11222


Q ss_pred             HHhhccCCeEEEEecCCCCCh
Q 014354          226 ILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      .... --+.=+|++|.|-...
T Consensus       207 ~f~~-~~~~~~I~TKlDet~~  226 (270)
T PRK06731        207 NFKD-IHIDGIVFTKFDETAS  226 (270)
T ss_pred             HhCC-CCCCEEEEEeecCCCC
Confidence            2222 2345789999998764

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.59  E-value=4.6e-07  Score=87.61  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccc------------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAA------------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t------------  116 (426)
                      ..+.+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..          +...++..            
T Consensus        29 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~  108 (267)
T PRK15112         29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQ  108 (267)
T ss_pred             eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHH
Confidence            45566677788899999999999999999999998887777766543211          11111111            


Q ss_pred             ccc--hhh---------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          117 NID--IRD---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       117 ~i~--~r~---------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++.  .+.         ...+.++++.+++.+... -.....||+|+++++.+++++..+++++|+|.|=
T Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  177 (267)
T PRK15112        109 ILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-SYYPHMLAPGQKQRLGLARALILRPKVIIADEAL  177 (267)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            010  000         112456788888743211 1122458999999999999999999999999993

>cd01859 MJ1464 MJ1464

Probab=98.58  E-value=4e-07  Score=80.54  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             CCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354          197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (426)
Q Consensus       197 ~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  276 (426)
                      .+|++++|+|+........     ..+...+...++|+++|+||+|+........+. .+.                   
T Consensus        12 ~aD~vl~V~D~~~~~~~~~-----~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~-------------------   66 (156)
T cd01859          12 ESDVVLEVLDARDPELTRS-----RKLERYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK-------------------   66 (156)
T ss_pred             hCCEEEEEeeCCCCcccCC-----HHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH-------------------
Confidence            3699999999976544332     112223344579999999999997654322221 110                   


Q ss_pred             hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                            .. .+.+++++||++|.|+.+|++.+.+.++.
T Consensus        67 ------~~-~~~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          67 ------ES-EGIPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             ------Hh-CCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence                  01 23568999999999999999999888764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.58  E-value=2.7e-07  Score=84.89  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------ccccccccc----cchhhhH-------
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------VMTLPFAAN----IDIRDTI-------  124 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------v~~~~~~t~----i~~r~~~-------  124 (426)
                      .+....++.+++|+|++|+|||||++.|+|...+..+.+.+.+.+..      +...++...    ..+++.+       
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~   98 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY   98 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence            44556678899999999999999999999998888777776554310      111111110    0111111       


Q ss_pred             ----HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ----RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ----~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                          .+..+++.+++..-  .-.....+|+|+++++.+++++..+++++|+|.|=
T Consensus        99 ~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~  151 (195)
T PRK13541         99 NSAETLYAAIHYFKLHDL--LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE  151 (195)
T ss_pred             ccHHHHHHHHHHcCCHhh--hccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                23455677776531  11223458999999999999999999999999993

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.58  E-value=4.8e-07  Score=90.65  Aligned_cols=150  Identities=19%  Similarity=0.219  Sum_probs=84.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      .++.+|+++||.||||||.|-.|.....  ....+++++..|.-    .-++   ....-.|.++   +++.  -+++.+
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY----RIGA---~EQLk~Ya~i---m~vp--~~vv~~  268 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY----RIGA---VEQLKTYADI---MGVP--LEVVYS  268 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc----hhhH---HHHHHHHHHH---hCCc--eEEecC
Confidence            3478999999999999999999999887  66788888876631    0011   0111112222   2211  122222


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                             .+++..... ...+++++||||.|....  ....-..+.+.+......-+.+|++++.....      +..+.
T Consensus       269 -------~~el~~ai~-~l~~~d~ILVDTaGrs~~--D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d------lkei~  332 (407)
T COG1419         269 -------PKELAEAIE-ALRDCDVILVDTAGRSQY--DKEKIEELKELIDVSHSIEVYLVLSATTKYED------LKEII  332 (407)
T ss_pred             -------HHHHHHHHH-HhhcCCEEEEeCCCCCcc--CHHHHHHHHHHHhccccceEEEEEecCcchHH------HHHHH
Confidence                   222222222 235689999999997553  22333445555544555667777887643322      12233


Q ss_pred             HHHhhccCCeEEEEecCCCCC
Q 014354          225 SILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ......++ .=++++|.|-..
T Consensus       333 ~~f~~~~i-~~~I~TKlDET~  352 (407)
T COG1419         333 KQFSLFPI-DGLIFTKLDETT  352 (407)
T ss_pred             HHhccCCc-ceeEEEcccccC
Confidence            32222222 357899999665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
1yr6_A	262	Pab0955 Crystal Structure : A Gtpase In Apo Form Fr		1e-19

>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 8/202 (3%)
Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           +I++ VG AGSGKTT       + +      YV NLD  V  LP+  +ID+R+ +  +E+
Sbjct: 15  MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189
           M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+E F +   G  +
Sbjct: 74  MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132
Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV---AQH 246
            E     +P VV Y+ D      P  +     +A  I  +     + A NK D+    + 
Sbjct: 133 MENLP--YPLVV-YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 189
Query: 247 EFALEWMQDFEVFQAAISSDHS 268
           E   ++ +D +   A +  D S
Sbjct: 190 ERHRKYFEDIDYLTARLKLDPS 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	7e-71
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	3e-04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score =  223 bits (569), Expect = 7e-71
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 58  AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
                 +     +I++ VG AGSGKTT       + +  N +   +NLD  V  LP+  +
Sbjct: 3   GSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPS 61

Query: 118 IDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177
           ID+R+ +  +E+M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+
Sbjct: 62  IDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQM 120

Query: 178 EIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237
           E F +   G  + E        +V Y+ D      P  +     +A  I  +     + A
Sbjct: 121 ETFLFHEFGVRLMENLPYP---LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA 177

Query: 238 FNKTDVA---QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294
            NK D+    + E   ++ +D +   A +  D S    +   +   + E    ++ + +S
Sbjct: 178 LNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLS 237

Query: 295 SVSGAGIEAYFKAVEE 310
           + +  G E       E
Sbjct: 238 AKTREGFEDLETLAYE 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 6e-11
 Identities = 78/518 (15%), Positives = 152/518 (29%), Gaps = 162/518 (31%)

Query: 10  LNSKPTEESGHTQMESEESSALKANDKE---KEEIT--ESMDKLHIEESSSGLAGSSSIN 64
           + ++  + S  T+M  E+   L  ND +   K  ++  +   KL        L       
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLR-----QAL------- 144

Query: 65  FKRKPVIIIVV-GMAGSGKT---------------------------------------T 84
            + +P   +++ G+ GSGKT                                        
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 85  FMHRLVCHTQSR-----NIRGYVMNLDPAVMTL----PFAANIDIRDTIRYKEVMKQFNL 135
            ++++  +  SR     NI+  + ++   +  L    P+   + +   ++  +    FNL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 136 GPNGGILTSLNLFTTKFDEVISLI------ERRADHLDYVLVDTPGQ-IEIF-TW----- 182
                      L TT+F +V   +          DH    L  TP +   +   +     
Sbjct: 265 S-------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRP 315

Query: 183 -----SASG------AIITEA---FASTFPTVVTYVVDTPRSANPMTF-------MSNML 221
                          +II E+     +T+        D   +    +           M 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 222 YACSILYK-TRLPL-VLA---FNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS 276
              S+      +P  +L+   F+          +  +     +          T ++  S
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISI-PS 430

Query: 277 LSLALD--------------EFYKNLKSVGVSSVSGAGIEAYF--------KAVE--ESA 312
           + L L               + Y   K+     +    ++ YF        K +E  E  
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 313 QEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTGLKDREARIRA 372
             F   +   LD R  E              K+R D         +LNT L+  +   + 
Sbjct: 491 TLFRMVF---LDFRFLE-------------QKIRHDSTAWNASGSILNT-LQQLK-FYKP 532

Query: 373 AMMDEDEVQEEDIDEDDDFERLSEEEDVIDEDEDEVTL 410
            + D D   E  ++   DF    EE  +  +  D + +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 321 ADLDKRRAEKQRLEE--ERQKENINKLRKDMEKSKGDTVVLNTGLKDREARIRAAMMDED 378
           A  D+   E + + +  E Q++ + +   D   SK             +     A  D +
Sbjct: 75  AQADRLTQEPESIRKWREEQRKRLQE--LD-AASK----------VMEQEWREKAKKDLE 121

Query: 379 E---VQEEDIDEDDDFERLSEEEDVIDEDED 406
           E    Q E ++++    R++++      D D
Sbjct: 122 EWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 20/101 (19%)

Query: 301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLN 360
           I    +  +E   E +  ++ +  KR  E     +  ++E   K +KD+E+         
Sbjct: 74  IAQADRLTQEP--ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE--------- 122

Query: 361 TGLKDREARIRAAMMDEDEVQEEDIDEDDDFERLSEEEDVI 401
              + +  ++       ++ +  +   D  F +   + D+I
Sbjct: 123 -WNQRQSEQV-------EKNKINNRIADKAFYQ-QPDADII 154

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Length = 171

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
            +I+ +VG + SGKTT + R++   + R +R  V+          F  + + +D+ +   
Sbjct: 2   SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG---DFEIDKEGKDSWKIYN 58

Query: 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173
                 +     +     +   + +++  + ER     D V+ + 
Sbjct: 59  SGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEG 103

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 65/197 (32%)

Query: 61  SSINFKRKPVI--IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI 118
           S+INF  + +   I+  G   SGKTT +  +         +G +++L             
Sbjct: 4   STINFANREINFKIVYYGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDER------- 55

Query: 119 DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178
               T+ +       ++G   G  T  +L+                         PGQ+ 
Sbjct: 56  ----TLFFD--FLPLDIGEVKGFKTRFHLY-----------------------TVPGQVF 86

Query: 179 I-FTWS-----ASGAIITEAFASTFPTVVTYVVDTPR-----SANPMTFMSNMLYACSIL 227
              +         G +              +V D+       +A  M  M   L    + 
Sbjct: 87  YNASRKLILRGVDGIV--------------FVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 228 YKTRLPLVLAFNKTDVA 244
               +P+V+  NK D+ 
Sbjct: 133 LD-DVPIVIQVNKRDLP 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.96
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.93
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.9
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.86
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.86
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.85
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.82
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.79
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.79
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.78
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.77
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.77
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.77
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.77
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.76
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.76
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.76
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.74
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.74
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.74
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.74
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.74
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.74
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.74
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.74
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.74
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.74
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.74
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.74
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.73
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.73
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.73
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.73
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.73
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.73
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.73
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.73
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.73
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.73
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.73
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.73
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.72
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.72
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.72
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.72
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.72
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.72
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.72
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.72
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.72
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.72
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.72
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.72
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.72
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.72
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.71
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.71
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.71
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.71
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.71
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.7
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.7
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.7
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.7
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.7
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.7
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.7
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.7
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.7
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.7
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.7
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.7
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.7
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.7
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.7
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.69
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.69
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.69
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.69
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.69
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.69
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.68
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.68
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.68
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.68
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.68
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.68
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.68
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.67
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.67
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.67
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.49
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.67
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.67
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.66
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.66
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.65
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.65
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.65
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.65
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.65
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.65
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.65
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.64
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.63
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.63
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.62
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.61
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.61
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.61
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.61
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.6
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.59
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.59
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.59
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.59
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.58
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.58
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.58
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.57
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.56
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.56
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.55
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.55
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.54
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.54
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.53
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.52
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.48
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.47
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.46
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.44
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.4
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.4
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.36
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.36
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.33
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.32
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.31
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.29
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.23
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.13
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.08
2xxa_A	433	Signal recognition particle protein; protein trans	99.06
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.04
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.01
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.99
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.99
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.97
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.96
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.94
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.9
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.89
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.89
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.88
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.87
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.86
1g6h_A	257	High-affinity branched-chain amino acid transport	98.86
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.85
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.85
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.84
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.83
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.83
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.81
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.8
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.79
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.78
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.78
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.77
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.76
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.75
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.72
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.71
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.7
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.67
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.63
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.62
2og2_A	359	Putative signal recognition particle receptor; nuc	98.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.61
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.59
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.58
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.57
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.51
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.51
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.5
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.48
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	98.48
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.46
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.45
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.42
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.41
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.4
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.4
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.4
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.37
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.3
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.27
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	98.24
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.23
3end_A	307	Light-independent protochlorophyllide reductase ir	98.21
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	98.2
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.2
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	98.19
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.18
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	98.18
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.18
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.16
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.14
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.13
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.1
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.08
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.05
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.04
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	98.02
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	98.01
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.0
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.96
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.95
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.92
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.91
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.91
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.89
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.88
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.87
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.84
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.83
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.82
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	97.82
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.81
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.8
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.79
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.71
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.71
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.68
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.68
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.66
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.65
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.6
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.57
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.55
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.53
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.53
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.52
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.52
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.52
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.52
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.5
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.49
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.48
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.45
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	97.41
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.38
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	97.38
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.37
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.37
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.36
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.35
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.33
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.33
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.33
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.29
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.28
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.27
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.27
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.26
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.25
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	97.25
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	97.24
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.21
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.21
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.15
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.13
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.12
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.11
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.1
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	97.1
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.06
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.06
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	97.06
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.04
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.02
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.0
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.99
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.99
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.98
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.97
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.94
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	96.92
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.91
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	96.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.87
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.85
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.85
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.82
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.8
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.8
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.8
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.79
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.78
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.78
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.77
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.76
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.74
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.71
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.7
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.69
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.68
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.68
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.67
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.63
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.62
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.61
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.6
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.59
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.55
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.51
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.5
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.5
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	96.49
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.47
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.46
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.45
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.44
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.44
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.42
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.42
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.41
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.4
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.39
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.38
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	96.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.33
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.29
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.29
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.28
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.26
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.2
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.2
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.18
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.15
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.13
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.12
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.12
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.12
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.1
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.1
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.07
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.06
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.05
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	96.05
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.04
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.02
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.02
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.01
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.0
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.99
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.97
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.93
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.82
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.81
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.81
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.8
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.79
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.77
3io5_A	333	Recombination and repair protein; storage dimer, i	95.75
3bos_A	242	Putative DNA replication factor; P-loop containing	95.72
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.72
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.69
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.68
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.67
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.67
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.63
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.63
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.62
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.61
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.61
1via_A	175	Shikimate kinase; structural genomics, transferase	95.55
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.54
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.53

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.96  E-value=1.2e-29  Score=248.64  Aligned_cols=218  Identities=16%  Similarity=0.184  Sum_probs=164.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.||||||||+|+|++..+..            ++..++++    +..+              .+++.  
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------~s~~~~tT----~~~~--------------~~~~~--   54 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------ISPKAGTT----RMRV--------------LGVKN--   54 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE--
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------cCCCCCce----eeEE--------------EEEEe--
Confidence            3456799999999999999999999987553            45555555    2111              12222  


Q ss_pred             ccccccHHHHHHHHHHHhc-CCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~-~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                                       .. +.+++||||||+.++..+..++..+......  ..+|++++|+|+..+.+..+     ..
T Consensus        55 -----------------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~-----~~  112 (308)
T 3iev_A           55 -----------------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRD-----EE  112 (308)
T ss_dssp             -----------------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHH-----HH
T ss_pred             -----------------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchh-----HH
Confidence                             13 5789999999998864334455544444332  34899999999988776544     22


Q ss_pred             H-HHHHhhccCCeEEEEecCCCC-ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          223 A-CSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       223 ~-~~~l~~~~~P~IlVlNKiDl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      . +..+...++|+|+|+||+|+. ...........+..                        .+..+.+++++||++|.|
T Consensus       113 ~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~------------------------~~~~~~~i~~vSA~~g~g  168 (308)
T 3iev_A          113 IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK------------------------KHPELTEIVPISALKGAN  168 (308)
T ss_dssp             HHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHH------------------------HCTTCCCEEECBTTTTBS
T ss_pred             HHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHH------------------------hccCCCeEEEEeCCCCCC
Confidence            2 455667789999999999998 55544444333321                        112457899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354          301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT  361 (426)
Q Consensus       301 v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~  361 (426)
                      +.+++++|...+++.+++||.+..++.+.++.+.+++|+++++.+.+|+||+....+-.+.
T Consensus       169 v~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~  229 (308)
T 3iev_A          169 LDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIK  229 (308)
T ss_dssp             HHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred             HHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEE
Confidence            9999999999999999999999999999999999999999999999999999877766554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=5.1e-28  Score=236.43  Aligned_cols=211  Identities=20%  Similarity=0.245  Sum_probs=155.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|+||||||||+|+|++..++.            ++..|++|    ++.+              .+++.    
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i------------vs~~~~tT----r~~i--------------~~i~~----   51 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTT----RKRL--------------RGILT----   51 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceee------------ecCCCCce----eEEE--------------EEEEE----
Confidence            45689999999999999999999987543            44555555    2211              12222    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+.+++||||||+.++  ...++..+......  ..+|++++|+|+.++.+..+     ..++.
T Consensus        52 ---------------~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~-----~~i~~  109 (301)
T 1wf3_A           52 ---------------EGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-----ELVAR  109 (301)
T ss_dssp             ---------------ETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-----HHHHH
T ss_pred             ---------------eCCcEEEEecCccccch--hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH-----HHHHH
Confidence                           24578999999999875  23333333333322  45899999999988766543     22334


Q ss_pred             HHhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+...  ++|+|+|+||+|+......  +...+.                         .+..+.+++++||++|.|+.+
T Consensus       110 ~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~iSA~~g~gv~~  162 (301)
T 1wf3_A          110 ALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYH-------------------------ELLPEAEPRMLSALDERQVAE  162 (301)
T ss_dssp             HHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHH-------------------------HTSTTSEEEECCTTCHHHHHH
T ss_pred             HHHhhcCCCCEEEEEECcccCCchHH--HHHHHH-------------------------HhcCcCcEEEEeCCCCCCHHH
Confidence            45555  8999999999999876530  111111                         123456799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHH-hHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354          304 YFKAVEESAQEFMETYKADLD-KRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT  361 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~  361 (426)
                      +++.|...+++.+++||.+.. ++.+.++.+.+.+|+++++.+.+++||+....+-.+.
T Consensus       163 l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~  221 (301)
T 1wf3_A          163 LKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVA  221 (301)
T ss_dssp             HHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred             HHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEE
Confidence            999999999888888988877 7888888999999999999999999999887776665

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.93  E-value=8.8e-27  Score=227.64  Aligned_cols=212  Identities=23%  Similarity=0.230  Sum_probs=151.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+|+|+||||||||+|+|++..++.            ++..++++    ++.+              .|++.    
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------~s~~~~tT----r~~~--------------~gi~~----   52 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTT----RHRI--------------VGIHT----   52 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCC----SSCE--------------EEEEE----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccc------------cCCCCCcc----eeeE--------------EEEEE----
Confidence            55689999999999999999999986431            33344444    2111              12222    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccchhchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                     ..+.++.||||||+. .+.  ..+...+......  ..+|++++|+|+.. ++..+.     .++
T Consensus        53 ---------------~~~~~i~~iDTpG~~~~~~--~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~-----~i~  109 (301)
T 1ega_A           53 ---------------EGAYQAIYVDTPGLHMEEK--RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE-----MVL  109 (301)
T ss_dssp             ---------------ETTEEEEEESSSSCCHHHH--HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH-----HHH
T ss_pred             ---------------ECCeeEEEEECcCCCccch--hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH-----HHH
Confidence                           244689999999997 431  2222222111111  34799999999977 665442     334


Q ss_pred             HHHhhccCCeEEEEecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..+...+.|.|+|+||+|+.. .....+....+.                         ..+++..++++||++|.|+.+
T Consensus       110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~-------------------------~~~~~~~~i~iSA~~g~~v~~  164 (301)
T 1ega_A          110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-------------------------SQMNFLDIVPISAETGLNVDT  164 (301)
T ss_dssp             HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH-------------------------TTSCCSEEEECCTTTTTTHHH
T ss_pred             HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH-------------------------HhcCcCceEEEECCCCCCHHH
Confidence            445566899999999999987 332222222111                         123345799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecc
Q 014354          304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNT  361 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~  361 (426)
                      +++.|...+++.+++||.+..++.+.++.+.+.+|+++++.+.+++||+....+-.+.
T Consensus       165 l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~  222 (301)
T 1ega_A          165 IAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFV  222 (301)
T ss_dssp             HHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEE
T ss_pred             HHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEE
Confidence            9999999999888899888888888999999999999999999999999777766554

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.90  E-value=2e-23  Score=198.42  Aligned_cols=243  Identities=27%  Similarity=0.413  Sum_probs=158.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+++++|.+|||||||+++|+.... .+.++.+++.||.....++....++++...+++++.. ++.+|++++++.
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   88 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESY   88 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecH
Confidence            45678999999999999999999998887 8889999999998766554444455555555555555 667777777654


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .++.....++...+.....+++++||||||+.++.....++..+.+.+  .. +++|+|+|+....+...++........
T Consensus        89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~  165 (262)
T 1yrb_A           89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALL  165 (262)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence            333333444444444444568999999999988644333344444433  44 899999999877666555433322223


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHH---HHHHHHHHhccc---cchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQ---DFEVFQAAISSD---HSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~---~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      .....++|.++|+||+|+..........+   .+..+...+...   ..|.. +  +++..+..+....+++++||++|.
T Consensus       166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~~SA~~~~  242 (262)
T 1yrb_A          166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA-Y--KMCSMMTEVLPPVRVLYLSAKTRE  242 (262)
T ss_dssp             HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH-H--HHHHHHHHHSCCCCCEECCTTTCT
T ss_pred             HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH-h--HHHHHHHHhcCcccceEEEecCcc
Confidence            34456899999999999987653322222   222222111000   00100 1  222233444444589999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 014354          300 GIEAYFKAVEESAQEFM  316 (426)
Q Consensus       300 gv~~l~~~l~~~~~~~~  316 (426)
                      |+++|+++|.+.++..+
T Consensus       243 gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          243 GFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             THHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhcccc
Confidence            99999999998877643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.86  E-value=3e-21  Score=186.95  Aligned_cols=158  Identities=14%  Similarity=0.063  Sum_probs=106.4

Q ss_pred             CCCEEEEcCCCcccccc----hh---chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEE
Q 014354          165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~----~~---~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlV  237 (426)
                      ..++.||||||+.....    ..   .....+..++. ...+++++|+|+...+...+.    ..++..+...+.|+|+|
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~----~~~~~~~~~~~~~~i~V  198 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV  198 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSSCGGGCHH----HHHHHHHCTTCSSEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc-CCCeEEEEEecCCcchhhhHH----HHHHHHhCCCCCeEEEE
Confidence            37899999999875311    11   11122222222 223466689999876554432    12344455568999999


Q ss_pred             EecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHH
Q 014354          238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (426)
Q Consensus       238 lNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~  316 (426)
                      +||+|+..... ...+   +.   ..              +. .  -..++.+++++||++|.|+.+++++|..   +.+
T Consensus       199 ~NK~Dl~~~~~~~~~~---~~---~~--------------~~-~--~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~  252 (299)
T 2aka_B          199 ITKLDLMDEGTDARDV---LE---NK--------------LL-P--LRRGYIGVVNRSQKDIDGKKDITAALAA---ERK  252 (299)
T ss_dssp             EECGGGSCTTCCCHHH---HT---TC--------------SS-C--CTTCEEECCCCCCBCTTSCBCHHHHHHH---HHH
T ss_pred             EEccccCCCCchHHHH---Hh---CC--------------cC-c--CCCCcEEEECCChhhccccccHHHHHHH---HHH
Confidence            99999987542 1111   11   00              00 0  0012357899999999999999999987   677


Q ss_pred             hhhhhHHHhHHHHH---HHHHHHHHHHHHHHHHhhhcccc
Q 014354          317 ETYKADLDKRRAEK---QRLEEERQKENINKLRKDMEKSK  353 (426)
Q Consensus       317 ~~~~~~~~~~~~~~---~~~~e~~re~~~~~l~~e~~~~~  353 (426)
                      ++|+...++....+   +.+.+.+|++++.++.+++||..
T Consensus       253 ~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~  292 (299)
T 2aka_B          253 FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR  292 (299)
T ss_dssp             HHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            88888888887777   99999999999999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.86  E-value=1e-20  Score=188.30  Aligned_cols=234  Identities=18%  Similarity=0.181  Sum_probs=135.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCC--------CC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLG--------PN  138 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~--------~n  138 (426)
                      +.+++|+|+|+||||||||+|+|++.....+++++|+..||...... +..+  .+    ...|..++..        +.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~-g~~l--~d----~~rm~~~~~~~~~~v~~~~~  144 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG-GSLL--GD----KTRMTELSRDMNAYIRPSPT  144 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTEEEECC--
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcC-cchh--ch----HHHHHHhcCCCCEEEEecCC
Confidence            35789999999999999999999999888889999999988653211 0001  01    1112333321        22


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      +|.++.   ......+.+..+.  ..+++++|+||||+...  .    ..+     ...+|++++|+|+..+......  
T Consensus       145 ~~~lgg---~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~--~----~~l-----~~~~d~vl~V~d~~~~~~~~~i--  206 (349)
T 2www_A          145 RGTLGG---VTRTTNEAILLCE--GAGYDIILIETVGVGQS--E----FAV-----ADMVDMFVLLLPPAGGDELQGI--  206 (349)
T ss_dssp             ----------CTTHHHHHHHHH--HTTCSEEEEECCCC--C--H----HHH-----HTTCSEEEEEECCC----------
T ss_pred             cccccc---chHHHHHHHHhhc--cCCCCEEEEECCCcchh--h----hhH-----HhhCCEEEEEEcCCcchhHHHh--
Confidence            333321   1122222222222  46789999999998543  1    111     2467999999999765322111  


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh-hhhcCCceEEeeccc
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD-EFYKNLKSVGVSSVS  297 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vv~vSA~~  297 (426)
                        ..     ...+.|.++|+||+|+............+.   ..+              ..... ......+++++||++
T Consensus       207 --~~-----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~---~~l--------------~~~~~~a~~~~~~vi~iSA~~  262 (349)
T 2www_A          207 --KR-----GIIEMADLVAVTKSDGDLIVPARRIQAEYV---SAL--------------KLLRKRSQVWKPKVIRISARS  262 (349)
T ss_dssp             -----------CCSCSEEEECCCSGGGHHHHHHHHHHHH---HHH--------------TTCC-----CCCEEEECCTTT
T ss_pred             --HH-----HHHhcCCEEEEeeecCCCchhHHHHHHHHH---HHH--------------HhcCccccCCCceEEEEecCC
Confidence              00     113579999999999976432221121121   110              00000 001135789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHhhhccc
Q 014354          298 GAGIEAYFKAVEESAQEFMETYKADLDKRR---AEKQRLEEERQKENINKLRKDMEKS  352 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~re~~~~~l~~e~~~~  352 (426)
                      |.|+.+|+++|.+.++.   .++....+..   ...+++.+.++++++.++.+++|+.
T Consensus       263 g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (349)
T 2www_A          263 GEGISEMWDKMKDFQDL---MLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVR  317 (349)
T ss_dssp             CTTHHHHHHHHHHHHHH---HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CCCHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence            99999999999998765   3444444443   6789999999999999999988753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.86  E-value=2.2e-20  Score=186.43  Aligned_cols=232  Identities=19%  Similarity=0.227  Sum_probs=140.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC--------CCC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL--------GPN  138 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l--------~~n  138 (426)
                      .+.++|+|+|+||||||||+++|+......+.++.++..||........ ..  .+.++    +..++.        .+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~-~l--~d~~~----~~~~~~~~~~~i~~~~~  149 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGS-IL--GDKTR----MARLAVHPNAYIRPSPT  149 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------CHHHHTCTTEEEECCC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccch-hc--cchhh----HHhhccCCCeeEEECCC
Confidence            4568999999999999999999999887888999999999765421111 00  11111    111111        112


Q ss_pred             CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhh
Q 014354          139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       139 g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      +|.++   .++......+..+.  ..+++++||||||+....      ..+     ...+|++|+|+|+..+.....+..
T Consensus       150 ~~~~~---~~~~~t~d~i~~~~--~~~~~~iiiDTpGi~~~~------~~~-----~~~aD~vl~V~d~~~~~~~~~l~~  213 (355)
T 3p32_A          150 SGTLG---GVTRATRETVVLLE--AAGFDVILIETVGVGQSE------VAV-----ANMVDTFVLLTLARTGDQLQGIKK  213 (355)
T ss_dssp             -CCHH---HHHHHHHHHHHHHH--HTTCCEEEEEECSCSSHH------HHH-----HTTCSEEEEEEESSTTCTTTTCCT
T ss_pred             Ccccc---chhHHHHHHHHHHh--hCCCCEEEEeCCCCCcHH------HHH-----HHhCCEEEEEECCCCCccHHHHHH
Confidence            22222   12333334343332  467999999999975521      111     256899999999866543322111


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g  298 (426)
                               ...++|+++|+||+|+............+......+..                .......+++++||++|
T Consensus       214 ---------~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~----------------~~~~~~~~vi~iSA~~g  268 (355)
T 3p32_A          214 ---------GVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYP----------------REALWRPPVLTMSAVEG  268 (355)
T ss_dssp             ---------TSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHST----------------TCCSCCCCEEEEBGGGT
T ss_pred             ---------hHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccc----------------cccCCCCceEEEEcCCC
Confidence                     12356999999999998665443333333321111000                00011368999999999


Q ss_pred             CCHHHHHHHHHHHHHHH--HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 014354          299 AGIEAYFKAVEESAQEF--METYKADLDKRRAEKQRLEEERQKENINKLRKD  348 (426)
Q Consensus       299 ~gv~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e  348 (426)
                      .|+++|+++|.+.++..  ..+|+.  .......+++.+.+|++++..+.+.
T Consensus       269 ~Gi~~L~~~i~~~~~~~~~~~~~~~--~r~~~~~~~~~e~i~e~l~~~~~~~  318 (355)
T 3p32_A          269 RGLAELWDTVERHRQVLTGAGEFDA--RRRDQQVDWTWQLVRDAVLDRVWSN  318 (355)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999988773  333443  2334478889999999999988754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.85  E-value=4e-20  Score=183.51  Aligned_cols=239  Identities=15%  Similarity=0.127  Sum_probs=143.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+|+|+|+||+|||||+|+|++.....++++.+++.||......+.. +  .+.    ..+..+...+++++++..
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i-l--~d~----~~~~~~~~~~~~~i~~~~  125 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI-L--GDK----TRMNDLARAEAAFIRPVP  125 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEEC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce-e--ccc----chHHhhccCCCceeecCc
Confidence            457789999999999999999999998887888999999888654322111 1  111    113344555666655421


Q ss_pred             c--cccccHHHHHHHHH-HHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          146 N--LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       146 ~--~ls~~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      .  .+.+..+....... ....+++++||||||+.++.      ..+     ...+|++++|+|+..+.......    .
T Consensus       126 ~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~~~-----~~~aD~vl~Vvd~~~~~~~~~l~----~  190 (341)
T 2p67_A          126 SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE------TEV-----ARMVDCFISLQIAGGGDDLQGIK----K  190 (341)
T ss_dssp             C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH------HHH-----HTTCSEEEEEECC------CCCC----H
T ss_pred             cccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH------HHH-----HHhCCEEEEEEeCCccHHHHHHH----H
Confidence            1  11222222222221 12567999999999987641      111     25689999999996543211110    0


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                           ...++|.++|+||+|+............+......+.              .....  ...+++++||++|.|++
T Consensus       191 -----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~--------------~~~~~--~~~~vi~iSA~~g~gi~  249 (341)
T 2p67_A          191 -----GLMEVADLIVINKDDGDNHTNVAIARHMYESALHILR--------------RKYDE--WQPRVLTCSALEKRGID  249 (341)
T ss_dssp             -----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSC--------------CSBTT--BCCEEEECBGGGTBSHH
T ss_pred             -----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhcc--------------ccccC--CCCcEEEeeCCCCCCHH
Confidence                 1125799999999999876433333223321111100              00000  13578999999999999


Q ss_pred             HHHHHHHHHHHHHH--hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354          303 AYFKAVEESAQEFM--ETYKADLDKRRAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       303 ~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      +|+++|.+.++.+.  ..+|.. . ....++++.+.+++++++++.+++
T Consensus       250 ~L~~~l~~~~~~~~~~~~~~~~-r-~~~~~~~~~e~i~e~l~~~~~~~~  296 (341)
T 2p67_A          250 EIWHAIIDFKTALTASGRLQQV-R-QQQSVEWLRKQTEEEVLNHLFANE  296 (341)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHhCChHHHH-H-HHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999998876431  245532 2 334788889999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.82  E-value=4e-19  Score=159.82  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=107.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ....++|+|+|.+|||||||+|+|++.....            ....+.++ ..                    ....  
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~t-~~--------------------~~~~--   64 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------VSKTPGKT-RS--------------------INFY--   64 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------CCSSCCCC-CC--------------------EEEE--
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcccc------------ccCCCCCc-cC--------------------eEEE--
Confidence            3456799999999999999999999876321            22222221 00                    0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh----chHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~----~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                                       ..+.++.||||||+.......    .........+.. ..++++++|+|+........     
T Consensus        65 -----------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~-----  122 (195)
T 3pqc_A           65 -----------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD-----  122 (195)
T ss_dssp             -----------------EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----
T ss_pred             -----------------EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHH-----
Confidence                             123578999999964421100    011112222332 34689999999977654433     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ......+...++|+++|+||+|+..........+.+..+.                      ..+...+++++||++|.|
T Consensus       123 ~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~g  180 (195)
T 3pqc_A          123 LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----------------------SKYGEYTIIPTSSVTGEG  180 (195)
T ss_dssp             HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----------------------HSSCCSCEEECCTTTCTT
T ss_pred             HHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH----------------------hhcCCCceEEEecCCCCC
Confidence            2233445566899999999999987665444443333221                      112446899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      +.+++++|.+.+++
T Consensus       181 v~~l~~~l~~~l~~  194 (195)
T 3pqc_A          181 ISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.82  E-value=1.4e-19  Score=167.20  Aligned_cols=180  Identities=15%  Similarity=0.093  Sum_probs=111.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+|+|.+|||||||+|+|++.....           .+...++++    +..                 ..... 
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------~~~~~~~~t----~~~-----------------~~~~~-   73 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------FASKTPGRT----QHI-----------------NYFSV-   73 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------CTTCCCCSC----CCE-----------------EEEEE-
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------eecCCCCcc----cce-----------------EEEEe-
Confidence            456789999999999999999999875210           122333222    000                 00000 


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch----HHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS----GAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~----~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                        .            ...+..+.||||||+.........    ...+..++.. ..+|++++|+|+..++....     .
T Consensus        74 --~------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~  134 (223)
T 4dhe_A           74 --G------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-----R  134 (223)
T ss_dssp             --S------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----H
T ss_pred             --c------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-----H
Confidence              0            023478999999998653211111    1222233333 33689999999988665433     2


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHh-hhhcCCceEEeecccCCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD-EFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~vv~vSA~~g~g  300 (426)
                      .++..+...++|+|+|+||+|+............+......                 ... ......+++++||++|.|
T Consensus       135 ~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~SA~~g~g  197 (223)
T 4dhe_A          135 RMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDA-----------------YRDAGYAGKLTVQLFSALKRTG  197 (223)
T ss_dssp             HHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH-----------------HHHHTCCSCEEEEEEBTTTTBS
T ss_pred             HHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHh-----------------hhhcccCCCCeEEEeecCCCcC
Confidence            33455666789999999999999876544333333211110                 000 002456899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQEF  315 (426)
Q Consensus       301 v~~l~~~l~~~~~~~  315 (426)
                      +.+++++|.+.++..
T Consensus       198 v~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          198 LDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.82  E-value=4.1e-20  Score=184.26  Aligned_cols=157  Identities=15%  Similarity=0.058  Sum_probs=105.3

Q ss_pred             CCCEEEEcCCCcccccch---hc---hHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354          165 HLDYVLVDTPGQIEIFTW---SA---SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~---~~---~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl  238 (426)
                      ..+++||||||+......   ..   .-..+...+.....+++++|+|+...+.....    +.++..+...+.|+|+|+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~----~~i~~~~~~~~~~~i~V~  204 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA----LKVAKEVDPQGQRTIGVI  204 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH----HHHHHHHCTTCTTEEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH----HHHHHHhCcCCCceEEEe
Confidence            478999999998763210   00   11223333333456788888998765544332    223444556689999999


Q ss_pred             ecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHh
Q 014354          239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFME  317 (426)
Q Consensus       239 NKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~  317 (426)
                      ||+|+..... ...+.   .   .                 .......++.+++++||++|.|+.++++++..   +.++
T Consensus       205 NK~Dl~~~~~~~~~~~---~---~-----------------~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~  258 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVL---E---N-----------------KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKF  258 (353)
T ss_dssp             ECGGGSCTTCCCHHHH---T---T-----------------CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHH
T ss_pred             ccccccCcchhHHHHH---h---C-----------------CcccccCCceEEEeCCcccccccccHHHHHHH---HHHH
Confidence            9999986542 11111   0   0                 00000012356899999999999999999976   6667


Q ss_pred             hhhhHHHhHHHHH---HHHHHHHHHHHHHHHHhhhcc
Q 014354          318 TYKADLDKRRAEK---QRLEEERQKENINKLRKDMEK  351 (426)
Q Consensus       318 ~~~~~~~~~~~~~---~~~~e~~re~~~~~l~~e~~~  351 (426)
                      +|+...++....+   +.+.+.+|+++++++.+++||
T Consensus       259 f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~  295 (353)
T 2x2e_A          259 FLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG  295 (353)
T ss_dssp             HHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777767766666   899999999999999999998

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.80  E-value=2.7e-18  Score=170.05  Aligned_cols=239  Identities=14%  Similarity=0.159  Sum_probs=139.6

Q ss_pred             CCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc-
Q 014354           63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI-  141 (426)
Q Consensus        63 ~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i-  141 (426)
                      +....++.+++|+|+||||||||+|+|++...+.++.+.+.+.+|...... ......+..+      ..+...++..+ 
T Consensus        49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~-~~~~~~~~~i------~~v~q~~~~~~~  121 (337)
T 2qm8_A           49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG-GSILGDKTRM------ARLAIDRNAFIR  121 (337)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC-CCSSCCGGGS------TTGGGCTTEEEE
T ss_pred             CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc-cchHHHhhhh------eeeccCcccccc
Confidence            344567889999999999999999999999888889999999887532211 0001111111      01111222221 


Q ss_pred             ----ccccccccccHHHHHHH-HHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhh
Q 014354          142 ----LTSLNLFTTKFDEVISL-IERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTF  216 (426)
Q Consensus       142 ----~~~~~~ls~~~~~~~~~-~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~  216 (426)
                          +|+   +.+..+..... ......+.+++||||||+....      ..+     ...+|++++|+|+..+.....+
T Consensus       122 ~~~~~~~---l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~------~~v-----~~~~d~vl~v~d~~~~~~~~~i  187 (337)
T 2qm8_A          122 PSPSSGT---LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE------TAV-----ADLTDFFLVLMLPGAGDELQGI  187 (337)
T ss_dssp             CCCCCSS---HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH------HHH-----HTTSSEEEEEECSCC------C
T ss_pred             cCccccc---ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch------hhH-----HhhCCEEEEEEcCCCcccHHHH
Confidence                121   11111111111 1112467999999999997641      111     2467999999998643221111


Q ss_pred             hhhHHHHHHHHhhccCCeEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEe
Q 014354          217 MSNMLYACSILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGV  293 (426)
Q Consensus       217 ~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~v  293 (426)
                      ...         ..++|.++|+||+|+..... .....+.+..   .              +..+ ...  ..+.+++++
T Consensus       188 ~~~---------i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~---a--------------~~l~-~~~~~~~~~~vl~~  240 (337)
T 2qm8_A          188 KKG---------IFELADMIAVNKADDGDGERRASAAASEYRA---A--------------LHIL-TPPSATWTPPVVTI  240 (337)
T ss_dssp             CTT---------HHHHCSEEEEECCSTTCCHHHHHHHHHHHHH---H--------------HTTB-CCSBTTBCCCEEEE
T ss_pred             HHH---------HhccccEEEEEchhccCchhHHHHHHHHHHH---H--------------HHhc-cccccCCCCCEEEE
Confidence            100         12457899999999865332 2222222211   0              0000 000  013579999


Q ss_pred             ecccCCCHHHHHHHHHHHHHHHH--hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354          294 SSVSGAGIEAYFKAVEESAQEFM--ETYKADLDKRRAEKQRLEEERQKENINKLRKDMEK  351 (426)
Q Consensus       294 SA~~g~gv~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~  351 (426)
                      ||++|.|+++|++.|.+..+...  ..| .+..+ ....+++.+.+|+++++++.++.+.
T Consensus       241 Sal~g~gi~~L~~~I~~~~~~~~~~~~~-~~~r~-~~~~~~~~~~i~~~~~~~~~~~~~~  298 (337)
T 2qm8_A          241 SGLHGKGLDSLWSRIEDHRSKLTATGEI-AGKRR-EQDVKWMWALVHERLHQRLVGSAEV  298 (337)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHHHTTHH-HHHHH-HHHHHHHHHHHHHHHHHHHTSSHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHHhCcHH-HHHHH-HHHHHHHHHHHHHHHHHHHHhCcch
Confidence            99999999999999998776322  112 23333 3448899999999999999987654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=1.7e-19  Score=176.12  Aligned_cols=157  Identities=13%  Similarity=0.077  Sum_probs=100.1

Q ss_pred             CCCEEEEcCCCcccccch---hchHHHHHHHHHh--cCCcEEEEEEeC-CCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354          165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~---~~~~~~l~~~~~~--~~~d~vl~VVDa-~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl  238 (426)
                      ..+++||||||+.+....   ......+......  ..+|++++|+|+ .........    ..++..+...+.|+|+|+
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v~  205 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGVI  205 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEEE
Confidence            478999999999752110   1112222222211  357999999997 444433221    234455566789999999


Q ss_pred             ecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeeccc---CCCHHHHHHHHHHHHH
Q 014354          239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS---GAGIEAYFKAVEESAQ  313 (426)
Q Consensus       239 NKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~---g~gv~~l~~~l~~~~~  313 (426)
                      ||+|+..... ..++..      ..                  +..+ ..+.+++.+||.+   |.|+.++++.+.+.++
T Consensus       206 NK~Dl~~~~~~~~~~~~------~~------------------~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLT------GR------------------VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             ECTTSSCSSCCCHHHHT------TS------------------SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cCcccCCcchHHHHHHh------CC------------------CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9999987543 111111      00                  0001 2334566777777   8999999999999999


Q ss_pred             HHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014354          314 EFMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEKS  352 (426)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~~  352 (426)
                      ..++ |+ +..++...++...+ +|+++++++.+++||.
T Consensus       262 ~~~~-~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~  297 (315)
T 1jwy_B          262 NHPI-YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDL  297 (315)
T ss_dssp             TCTT-GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCc-cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHH
Confidence            8777 54 45566666666664 9999999999999986

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.79  E-value=1.6e-18  Score=156.47  Aligned_cols=170  Identities=15%  Similarity=0.110  Sum_probs=102.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+.++|+|+|.+|||||||+|+|++..+..           .+...++++ ..                    ....  
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------~~~~~~~~t-~~--------------------~~~~--   65 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA-----------RTSSKPGKT-QT--------------------LNFY--   65 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CC--------------------EEEE--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------ccCCCCCce-ee--------------------EEEE--
Confidence            3466899999999999999999999875221           011112111 00                    0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh----chHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~----~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                                       .-+.++.||||||+.......    .........+.. ..++++++|+|+........     
T Consensus        66 -----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-----  123 (195)
T 1svi_A           66 -----------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD-----  123 (195)
T ss_dssp             -----------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----
T ss_pred             -----------------EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHH-----
Confidence                             012479999999975431110    011112222222 23489999999987665443     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ...+..+...++|+++|+||+|+............+..   .              ++     .....+++++||++|.|
T Consensus       124 ~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~--------------~~-----~~~~~~~~~~Sa~~~~g  181 (195)
T 1svi_A          124 VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQ---T--------------LN-----IDPEDELILFSSETKKG  181 (195)
T ss_dssp             HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH---H--------------HT-----CCTTSEEEECCTTTCTT
T ss_pred             HHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHH---H--------------Hc-----ccCCCceEEEEccCCCC
Confidence            22234455678999999999999987654333322221   1              00     12346899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQ  313 (426)
Q Consensus       301 v~~l~~~l~~~~~  313 (426)
                      +.+++++|.+.++
T Consensus       182 v~~l~~~l~~~l~  194 (195)
T 1svi_A          182 KDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.79  E-value=6.8e-19  Score=189.40  Aligned_cols=157  Identities=13%  Similarity=0.029  Sum_probs=110.6

Q ss_pred             CCCEEEEcCCCcccccc----h---hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEE
Q 014354          165 HLDYVLVDTPGQIEIFT----W---SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~----~---~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlV  237 (426)
                      ..+++||||||+.....    .   ..... ++..+....+|++++|+|+.......+.    +.++..+...+.|+|+|
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~-lv~~yi~~~aDlIL~VVDAs~~~~~~d~----l~ll~~L~~~g~pvIlV  223 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRD-MLMQFVTKENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV  223 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHH-HHHHHHTSTTEEEEEEEETTSCSSSCHH----HHHHHHHCTTCSSEEEE
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHH-HHHHHHhcCCcEEEEEEcCCCCcchhHH----HHHHHHHHhcCCCEEEE
Confidence            46899999999977311    0   12222 3333333668999999999987766542    23455566778999999


Q ss_pred             EecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH---HHHH
Q 014354          238 FNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE---SAQE  314 (426)
Q Consensus       238 lNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~---~~~~  314 (426)
                      +||+|++.......   .+.   .                ...+.-..++.+++++||++|.|+++|++++.+   .+++
T Consensus       224 lNKiDlv~~~~~~~---~il---~----------------~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe  281 (772)
T 3zvr_A          224 ITKLDLMDEGTDAR---DVL---E----------------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS  281 (772)
T ss_dssp             EECTTSSCTTCCSH---HHH---T----------------TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred             EeCcccCCcchhhH---HHH---H----------------HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence            99999997643211   010   0                000000124567999999999999999999987   4666


Q ss_pred             HHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354          315 FMETYKADLDKRRAEKQRLEEERQKENINKLRKDMEK  351 (426)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~~~  351 (426)
                      .+++   +..+++..++.+.+.+|++++.++++++||
T Consensus       282 ~P~y---d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~  315 (772)
T 3zvr_A          282 HPSY---RHLADRMGTPYLQKVLNQQLTNHIRDTLPG  315 (772)
T ss_dssp             CTTT---GGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccch---hhhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence            5554   556788889999999999999999999999

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.78  E-value=3e-19  Score=169.88  Aligned_cols=211  Identities=15%  Similarity=0.157  Sum_probs=113.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|++|||||||+|+|++.....            ....+.+++..   .              ..+.+.   
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~------------~~~~~~~~t~~---~--------------~~~~~~---   67 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFE------------SKLGSQTLTKT---C--------------SKSQGS---   67 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSC------------CCTTSCCCCCS---C--------------EEEEEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCceeee---e--------------EEEEEE---
Confidence            456899999999999999999999876322            11111101000   0              001111   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHH---HHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA---IITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~---~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                      ..+.++.||||||+.++.  .....   .+...+..  ..+|++|+|+|+.. +....     .
T Consensus        68 ----------------~~~~~i~iiDTpG~~~~~--~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~-----~  123 (260)
T 2xtp_A           68 ----------------WGNREIVIIDTPDMFSWK--DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQD-----Q  123 (260)
T ss_dssp             ----------------ETTEEEEEEECCGGGGSS--CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHH-----H
T ss_pred             ----------------eCCCEEEEEECcCCCCCC--CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHH-----H
Confidence                            234689999999998753  22222   22332222  45899999999985 44332     1


Q ss_pred             HHHHHHhhc-----cCCeEEEEe-cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhc-CCceEEee
Q 014354          222 YACSILYKT-----RLPLVLAFN-KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVS  294 (426)
Q Consensus       222 ~~~~~l~~~-----~~P~IlVlN-KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~vv~vS  294 (426)
                      .++..+...     ..|.|+|+| |+|+.... ...+.....         ......+.+.++    ..+. +.+ +++|
T Consensus       124 ~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~---------~~~~~~~~~~~~----~~~~~~~~-~~~S  188 (260)
T 2xtp_A          124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSD---------NKALSKLVAACG----GRICAFNN-RAEG  188 (260)
T ss_dssp             HHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCC---------CHHHHHHHHHTT----TCEEECCT-TCCH
T ss_pred             HHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcc---------hHHHHHHHHHhC----CeEEEecC-cccc
Confidence            222223322     678888888 99998542 222211000         000000111111    1111 223 8899


Q ss_pred             cccCCCHHHHHHHHHHHHHHHH-hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354          295 SVSGAGIEAYFKAVEESAQEFM-ETYKADLDKRRAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       295 A~~g~gv~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      |++|.|+.+++++|...++... ++|+.+..+..+. +...+..++++...+.+++
T Consensus       189 A~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  243 (260)
T 2xtp_A          189 SNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR-SKCGPVGSDERVKEFKQSL  243 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--------------CHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH-HHhhhhhHHHHHHHHHHHH
Confidence            9999999999999999998876 6788777766665 3333444444444444443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.78  E-value=5.4e-19  Score=156.15  Aligned_cols=160  Identities=24%  Similarity=0.279  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+|+|++.....             ...|..+ ++                 ...+.+.     
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~-------------~~~~~~t-~~-----------------~~~~~~~-----   46 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYI-------------GNWPGVT-VE-----------------KKEGEFE-----   46 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSC-------------C-----C-CC-----------------CCEEEEE-----
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeec-------------cCCCCcc-ee-----------------eeEEEEE-----
Confidence            3689999999999999999999875321             2222211 00                 0001010     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ..+..+.+|||||+.++.... ....+.. .+....++++++|+|+....   .    ...++..+
T Consensus        47 --------------~~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~----~~~~~~~~  104 (165)
T 2wji_A           47 --------------YNGEKFKVVDLPGVYSLTANS-IDEIIARDYIINEKPDLVVNIVDATALE---R----NLYLTLQL  104 (165)
T ss_dssp             --------------ETTEEEEEEECCCCSCSSSSS-HHHHHHHHHHHHHCCSEEEEEEETTCHH---H----HHHHHHHH
T ss_pred             --------------ECCcEEEEEECCCcccCCCcc-hhHHHHHHHHhcCCCCEEEEEecCCchh---H----hHHHHHHH
Confidence                          123578999999998753221 1222222 33334689999999986521   1    11223334


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+........   ....+              .+.        + ..+++++||++|.|+.+++++
T Consensus       105 ~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~--------------~~~--------~-~~~~~~~SA~~~~~v~~l~~~  158 (165)
T 2wji_A          105 MEMGANLLLALNKMDLAKSLGIEI---DVDKL--------------EKI--------L-GVKVVPLSAAKKMGIEELKKA  158 (165)
T ss_dssp             HHTTCCEEEEEECHHHHHHTTCCC---CHHHH--------------HHH--------H-TSCEEECBGGGTBSHHHHHHH
T ss_pred             HhcCCCEEEEEEchHhccccChhh---HHHHH--------------HHH--------h-CCCEEEEEcCCCCCHHHHHHH
Confidence            456899999999999753321100   01111              111        1 257999999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |.+.+
T Consensus       159 l~~~~  163 (165)
T 2wji_A          159 ISIAV  163 (165)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.78  E-value=1.7e-19  Score=172.02  Aligned_cols=159  Identities=19%  Similarity=0.240  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.||||||||+|+|++....             +.+.|+.+ ++   ..              .+.+.      
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-------------v~~~pg~T-v~---~~--------------~~~~~------   44 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQR-------------VGNWPGVT-VE---KK--------------TGEFL------   44 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEE-------------EEECTTSS-SE---EE--------------EEEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC-------------ccCCCCce-EE---EE--------------EEEEE------
Confidence            47999999999999999999987532             22333332 10   00              01111      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh---chHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS---ASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~---~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                   ..+..+.||||||+..+....   .....+.. .+....+|++|+|+|++..   ..    .++...
T Consensus        45 -------------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---~~----~~~l~~  104 (256)
T 3iby_A           45 -------------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---ER----HLYLTS  104 (256)
T ss_dssp             -------------ETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---HH----HHHHHH
T ss_pred             -------------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---hh----HHHHHH
Confidence                         133588999999998764221   22223333 3334568999999999751   11    133445


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+...++|+|+|+||+|+.........   ...+.                      ... ..++|++||++|.|+++++
T Consensus       105 ~l~~~~~pvilv~NK~Dl~~~~~~~~~---~~~l~----------------------~~l-g~~vi~~SA~~g~gi~el~  158 (256)
T 3iby_A          105 QLFELGKPVVVALNMMDIAEHRGISID---TEKLE----------------------SLL-GCSVIPIQAHKNIGIPALQ  158 (256)
T ss_dssp             HHTTSCSCEEEEEECHHHHHHTTCEEC---HHHHH----------------------HHH-CSCEEECBGGGTBSHHHHH
T ss_pred             HHHHcCCCEEEEEEChhcCCcCCcHHH---HHHHH----------------------HHc-CCCEEEEECCCCCCHHHHH
Confidence            566779999999999997654321101   11111                      111 3689999999999999999


Q ss_pred             HHHHHH
Q 014354          306 KAVEES  311 (426)
Q Consensus       306 ~~l~~~  311 (426)
                      ++|.+.
T Consensus       159 ~~i~~~  164 (256)
T 3iby_A          159 QSLLHC  164 (256)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            999876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.77  E-value=9.6e-19  Score=168.22  Aligned_cols=160  Identities=21%  Similarity=0.323  Sum_probs=101.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.||||||||+|+|++....             +.+.|+++ ++   ..              .+.+.     
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------v~~~pg~t-v~---~~--------------~~~~~-----   46 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------VGNWPGVT-VE---RK--------------SGLVK-----   46 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-------------CCSSSCCC-CS---CE--------------EEECT-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCCc-EE---EE--------------EEEEe-----
Confidence            468999999999999999999987532             33444333 11   00              01111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH-HHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~-~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    . +..+.||||||+..+.... ....+.. .+....+|++++|+|++...   .    .+.+...+
T Consensus        47 --------------~-~~~l~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~----~~~~~~~l  103 (272)
T 3b1v_A           47 --------------K-NKDLEIQDLPGIYSMSPYS-PEAKVARDYLLSQRADSILNVVDATNLE---R----NLYLTTQL  103 (272)
T ss_dssp             --------------T-CTTEEEEECCCCSCSSCSS-HHHHHHHHHHHTTCCSEEEEEEEGGGHH---H----HHHHHHHH
T ss_pred             --------------c-CCeEEEEECCCcCccCCCC-hHHHHHHHHHhcCCCCEEEEEecCCchH---h----HHHHHHHH
Confidence                          1 4689999999998763322 2223333 33334689999999996521   1    12233344


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+.......   .....+              .+.        . ..+++++||++|.|+.+++++
T Consensus       104 ~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l--------------~~~--------l-g~~vi~~SA~~g~gi~el~~~  157 (272)
T 3b1v_A          104 IETGIPVTIALNMIDVLDGQGKK---INVDKL--------------SYH--------L-GVPVVATSALKQTGVDQVVKK  157 (272)
T ss_dssp             HHTCSCEEEEEECHHHHHHTTCC---CCHHHH--------------HHH--------H-TSCEEECBTTTTBSHHHHHHH
T ss_pred             HhcCCCEEEEEEChhhCCcCCcH---HHHHHH--------------HHH--------c-CCCEEEEEccCCCCHHHHHHH
Confidence            55789999999999975432110   011111              111        1 257999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       158 i~~~~~  163 (272)
T 3b1v_A          158 AAHTTT  163 (272)
T ss_dssp             HHHSCT
T ss_pred             HHHHHh
Confidence            987653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.77  E-value=4.2e-19  Score=169.41  Aligned_cols=162  Identities=23%  Similarity=0.262  Sum_probs=103.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.||||||||+|+|++....             +...|+.+ ++..                 .+.+.    
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------~~~~pg~t-v~~~-----------------~~~~~----   48 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQY-------------VANWPGVT-VEKK-----------------EGVFT----   48 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEE-------------EEECTTSC-CEEE-----------------EEEEE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCce-EEEE-----------------EEEEE----
Confidence            4478999999999999999999987643             22223222 1100                 01111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHH-HHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~-~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ..+..+.||||||+..+..... ...+. ..+....+|++++|+|++...   .    .++....
T Consensus        49 ---------------~~~~~~~l~DtpG~~~~~~~~~-~e~v~~~~~~~~~~d~ii~V~D~t~~~---~----~~~~~~~  105 (258)
T 3a1s_A           49 ---------------YKGYTINLIDLPGTYSLGYSSI-DEKIARDYLLKGDADLVILVADSVNPE---Q----SLYLLLE  105 (258)
T ss_dssp             ---------------ETTEEEEEEECCCCSSCCSSSH-HHHHHHHHHHHSCCSEEEEEEETTSCH---H----HHHHHHH
T ss_pred             ---------------ECCeEEEEEECCCcCccCCCCH-HHHHHHHHHhhcCCCEEEEEeCCCchh---h----HHHHHHH
Confidence                           1346899999999987643222 22233 333345789999999997632   1    1233344


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +...++|+|+|+||+|+.......   .....+              .+        .+ ..+++++||++|.|+.++++
T Consensus       106 l~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l--------------~~--------~l-g~~vi~~SA~~g~gi~el~~  159 (258)
T 3a1s_A          106 ILEMEKKVILAMTAIDEAKKTGMK---IDRYEL--------------QK--------HL-GIPVVFTSSVTGEGLEELKE  159 (258)
T ss_dssp             HHTTTCCEEEEEECHHHHHHTTCC---BCHHHH--------------HH--------HH-CSCEEECCTTTCTTHHHHHH
T ss_pred             HHhcCCCEEEEEECcCCCCccchH---HHHHHH--------------HH--------Hc-CCCEEEEEeeCCcCHHHHHH
Confidence            556789999999999975432211   011111              11        11 26899999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      +|.+.+.
T Consensus       160 ~i~~~~~  166 (258)
T 3a1s_A          160 KIVEYAQ  166 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=2.6e-18  Score=152.39  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+.++|+|+|.+|||||||+++|++..+...             ..+..+ .+.                 ....+.  
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~~-~~~-----------------~~~~~~--   51 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ-------------EAGGIT-QHI-----------------GAYQVT--   51 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCS-------------SCCSSS-TTC-----------------CCCEEE--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccC-------------CCCcee-Eee-----------------eEEEEE--
Confidence            34678999999999999999999998764421             111111 000                 000000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                       ..+..+.||||||+.++.....        .....+|++++|+|+........     +..+.
T Consensus        52 -----------------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~-----~~~l~  101 (178)
T 2lkc_A           52 -----------------VNDKKITFLDTPGHEAFTTMRA--------RGAQVTDIVILVVAADDGVMPQT-----VEAIN  101 (178)
T ss_dssp             -----------------ETTEEEEESCCCSSSSSSCSCC--------SSCCCCCEEEEEEETTCCCCHHH-----HHHHH
T ss_pred             -----------------eCCceEEEEECCCCHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHH-----HHHHH
Confidence                             1335788999999977532111        01134799999999877654433     22334


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+...++|+++|+||+|+..... ..+...+.    .              .......+....+++++||++|.|+.+++
T Consensus       102 ~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  162 (178)
T 2lkc_A          102 HAKAANVPIIVAINKMDKPEANP-DRVMQELM----E--------------YNLVPEEWGGDTIFCKLSAKTKEGLDHLL  162 (178)
T ss_dssp             HHGGGSCCEEEEEETTTSSCSCH-HHHHHHHT----T--------------TTCCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred             HHHhCCCCEEEEEECccCCcCCH-HHHHHHHH----h--------------cCcChhHcCCcccEEEEecCCCCCHHHHH
Confidence            45566899999999999986421 11111111    0              00000111123579999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ++|.+.+..
T Consensus       163 ~~l~~~~~~  171 (178)
T 2lkc_A          163 EMILLVSEM  171 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            999887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.77  E-value=9.5e-18  Score=156.20  Aligned_cols=177  Identities=16%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+.++|+|+|.+|||||||+|+|++..+.             +...++++    +..                 .....
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------~~~~~~~t----~~~-----------------~~~~~   71 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVD-------------VQSYSFTT----KNL-----------------YVGHF   71 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------EECC---------CE-----------------EEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCcc----eee-----------------eeeee
Confidence            356789999999999999999999987542             11122222    000                 00000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc--h-HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--S-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~--~-~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~  222 (426)
                      .                ..+..+.||||||+.+......  . ...+...  ...+|++|+|+|+....+...  .....
T Consensus        72 ~----------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~--~~~~~  131 (228)
T 2qu8_A           72 D----------------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTI--KEQIN  131 (228)
T ss_dssp             E----------------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCH--HHHHH
T ss_pred             e----------------cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcch--HHHHH
Confidence            0                1235789999999965321111  0 1112211  245799999999987544321  11122


Q ss_pred             HHHHHhhc--cCCeEEEEecCCCCChHhHHH-HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          223 ACSILYKT--RLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       223 ~~~~l~~~--~~P~IlVlNKiDl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      ++..+...  ++|+++|+||+|+.....+.. ....+..+..                     ......+++++||++|.
T Consensus       132 ~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~SA~~g~  190 (228)
T 2qu8_A          132 LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---------------------NVKNPIKFSSFSTLTGV  190 (228)
T ss_dssp             HHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---------------------HCCSCEEEEECCTTTCT
T ss_pred             HHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---------------------hcCCCceEEEEecccCC
Confidence            33334443  899999999999987543211 1111111110                     11112579999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q 014354          300 GIEAYFKAVEESAQEFME  317 (426)
Q Consensus       300 gv~~l~~~l~~~~~~~~~  317 (426)
                      |+.+++++|.+.+....+
T Consensus       191 gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          191 GVEQAKITACELLKNDQA  208 (228)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998876554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.77  E-value=1e-18  Score=156.36  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=98.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++......              .+.++......                 .+..    
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~----   47 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE--------------YDPTIEDSYRK-----------------QVVI----   47 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCC--------------CCTTCCEEEEE-----------------EEEE----
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCchheEEE-----------------EEEE----
Confidence            346899999999999999999998764321              11111000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++..   ...   ..+  ..+|++++|+|+...........-...+....
T Consensus        48 --------------~~~~~~~~i~Dt~G~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  105 (189)
T 4dsu_A           48 --------------DGETCLLDILDTAGQEEYSA---MRD---QYM--RTGEGFLCVFAINNTKSFEDIHHYREQIKRVK  105 (189)
T ss_dssp             --------------TTEEEEEEEEECCCC---CT---THH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred             --------------CCcEEEEEEEECCCcHHHHH---HHH---HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence                          01234678999999877521   111   112  22689999999875322111110001111212


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|+++|+||+|+............+.   .                      .+ ..+++++||++|.|+.+++.+
T Consensus       106 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~----------------------~~-~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A          106 DSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---R----------------------SY-GIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             TCSCCCEEEEEECTTSSSCSSCHHHHHHHH---H----------------------HH-TCCEEECCTTTCTTHHHHHHH
T ss_pred             CCCCCcEEEEEECccCcccccCHHHHHHHH---H----------------------Hc-CCeEEEEeCCCCCCHHHHHHH
Confidence            235799999999999985432211211111   1                      11 257999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 014354          308 VEESAQEFMETYK  320 (426)
Q Consensus       308 l~~~~~~~~~~~~  320 (426)
                      |.+.+......++
T Consensus       160 l~~~~~~~~~~~~  172 (189)
T 4dsu_A          160 LVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcc
Confidence            9998877655443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.77  E-value=2.4e-18  Score=155.58  Aligned_cols=168  Identities=16%  Similarity=0.222  Sum_probs=100.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...+.++|+|+|.+|||||||+++|++..+..            +. +..+..+.                      ...
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~------------~~-~~~t~~~~----------------------~~~   57 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS------------KH-ITATVGYN----------------------VET   57 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------C-CCCCSSEE----------------------EEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc------------cc-ccccccee----------------------EEE
Confidence            34566899999999999999999999876442            00 00011000                      000


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      ..                .....+.||||||+.++.....      ..  ...+|++|+|+|+....+.   ......+.
T Consensus        58 ~~----------------~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~D~~~~~s~---~~~~~~~~  110 (199)
T 4bas_A           58 FE----------------KGRVAFTVFDMGGAKKFRGLWE------TY--YDNIDAVIFVVDSSDHLRL---CVVKSEIQ  110 (199)
T ss_dssp             EE----------------ETTEEEEEEEECCSGGGGGGGG------GG--CTTCSEEEEEEETTCGGGH---HHHHHHHH
T ss_pred             EE----------------eCCEEEEEEECCCCHhHHHHHH------HH--HhcCCEEEEEEECCcHHHH---HHHHHHHH
Confidence            00                2446899999999977521111      01  1347999999999764322   11111111


Q ss_pred             HHHhh----------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEee
Q 014354          225 SILYK----------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS  294 (426)
Q Consensus       225 ~~l~~----------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vS  294 (426)
                      ..+..          .++|+|||+||+|+.......++...+. +..                  ..  .....+++++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~------------------~~--~~~~~~~~~~S  169 (199)
T 4bas_A          111 AMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTT------------------LM--GDHPFVIFASN  169 (199)
T ss_dssp             HHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHH------------------HH--TTSCEEEEECB
T ss_pred             HHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chh------------------hc--cCCeeEEEEee
Confidence            11111          2899999999999987643323322221 000                  00  01345799999


Q ss_pred             cccCCCHHHHHHHHHHHHHHH
Q 014354          295 SVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       295 A~~g~gv~~l~~~l~~~~~~~  315 (426)
                      |++|.||.+++++|.+.+...
T Consensus       170 a~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          170 GLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHH
Confidence            999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.76  E-value=1.7e-18  Score=177.27  Aligned_cols=179  Identities=15%  Similarity=0.206  Sum_probs=111.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.||||||||+|+|++..+..            ++..++++    ++.+              ...+.   
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------~~~~~gtT----~d~~--------------~~~~~---  219 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT---  219 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------EC-------------C--------------CEEEE---
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------ecCCCCce----eeee--------------EEEEE---
Confidence            356899999999999999999999876431            33344443    1111              00011   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-c-hHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-A-SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~-~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                      ..+..+.||||||+.+..... . ......... ....+|++++|+|+..+...++.     .+
T Consensus       220 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-----~~  278 (436)
T 2hjg_A          220 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-----RI  278 (436)
T ss_dssp             ----------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HH
T ss_pred             ----------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-----HH
Confidence                            133569999999996542110 0 111112221 22347999999999988776552     34


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHhH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +..+...++|+|+|+||+|+......  .++.+.+.                 +.+     .+..+.+++++||++|.|+
T Consensus       279 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~l-----~~~~~~~~~~~SA~tg~~v  336 (436)
T 2hjg_A          279 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR-----------------DHF-----QFLDYAPILFMSALTKKRI  336 (436)
T ss_dssp             HHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH-----------------HHC-----GGGTTSCEEECCTTTCTTG
T ss_pred             HHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH-----------------Hhc-----ccCCCCCEEEEecccCCCH
Confidence            44455678999999999999875421  12222221                 111     1234578999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 014354          302 EAYFKAVEESAQEFMETYKA  321 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~~~~~  321 (426)
                      .++++.+.+.+......++.
T Consensus       337 ~~l~~~i~~~~~~~~~~~~t  356 (436)
T 2hjg_A          337 HTLMPAIIKASENHSLRVQT  356 (436)
T ss_dssp             GGHHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHHHHHHhhcCCCH
Confidence            99999999888765544443

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=5.1e-18  Score=152.56  Aligned_cols=167  Identities=17%  Similarity=0.181  Sum_probs=96.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||+|+|++..+..        ..|.+.   ..                          .....
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~---~~--------------------------~~~~~   56 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH--------TSPTIG---SN--------------------------VEEIV   56 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE--------EECCSC---SS--------------------------CEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc--------CcCCCc---cc--------------------------eEEEE
Confidence            356899999999999999999999765320        011110   00                          00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.||||||+.++...  .    ...+  ..+|++++|+|+....+.....   ..+...
T Consensus        57 ----------------~~~~~~~i~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~~~---~~~~~~  109 (187)
T 1zj6_A           57 ----------------INNTRFLMWDIGGQESLRSS--W----NTYY--TNTEFVIVVVDSTDRERISVTR---EELYKM  109 (187)
T ss_dssp             ----------------ETTEEEEEEECCC----CGG--G----HHHH--TTCCEEEEEEETTCTTTHHHHH---HHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHHH--H----HHHh--cCCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence                            13368899999999765211  1    1112  4579999999997754322211   111222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~  302 (426)
                      +.   ..++|+++|+||+|+.......++.+.+.                     ..  .+ ....+++++||++|.|+.
T Consensus       110 ~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A          110 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LT--SIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             HTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GG--GCCSSCEEEEECBTTTTBTHH
T ss_pred             HhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------hh--hhcCCCcEEEEccCCCCcCHH
Confidence            22   25799999999999986432222221111                     00  00 113479999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 014354          303 AYFKAVEESAQEFMETYK  320 (426)
Q Consensus       303 ~l~~~l~~~~~~~~~~~~  320 (426)
                      +++++|.+.+...++.+|
T Consensus       167 ~l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             HHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHhhhhc
Confidence            999999998877665544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=7.2e-18  Score=173.59  Aligned_cols=180  Identities=15%  Similarity=0.198  Sum_probs=112.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+++|.+|+|||||+|+|++.....            ++..++++    ++.+              ...+.   
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~---  239 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT---  239 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECC----------CTT--------------SEEEE---
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccc------------cCCCCCeE----EEEE--------------EEEEE---
Confidence            456899999999999999999999765321            33334333    1111              00011   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh--chHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~--~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                      ..+..+.||||||+.+.....  .........+ ....+|++|+|+|+..++..++     ..+
T Consensus       240 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-----~~~  298 (456)
T 4dcu_A          240 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-----KRI  298 (456)
T ss_dssp             ----------------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-----HHH
T ss_pred             ----------------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-----HHH
Confidence                            133579999999975532110  1111122222 2244799999999998877654     334


Q ss_pred             HHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +..+...++|+|||+||+|+.....  ..+..+.+...                 +     .+..+.+++++||++|.|+
T Consensus       299 ~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------------~-----~~~~~~~~~~~SA~~g~gv  356 (456)
T 4dcu_A          299 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDH-----------------F-----QFLDYAPILFMSALTKKRI  356 (456)
T ss_dssp             HHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHH-----------------C-----GGGTTSCEEECCTTTCTTG
T ss_pred             HHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHh-----------------c-----ccCCCCCEEEEcCCCCcCH
Confidence            4556667899999999999986432  12222222110                 0     2235678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhH
Q 014354          302 EAYFKAVEESAQEFMETYKAD  322 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~~~~~~  322 (426)
                      .+++.+|.+.+.......+..
T Consensus       357 ~~l~~~i~~~~~~~~~~~~t~  377 (456)
T 4dcu_A          357 HTLMPAIIKASENHSLRVQTN  377 (456)
T ss_dssp             GGHHHHHHHHHHHHTCCCCHH
T ss_pred             HHHHHHHHHHHHHhcccCCHH
Confidence            999999999887765554433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=2.9e-18  Score=175.72  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.||||||||+|+|++...+.            +...|++|    ++..              -+.+.      
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------   45 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVT----RDPV--------------QDTVE------   45 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC------------------------------CCS--------------EEEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCce------------ecCCCCCc----ccee--------------eEEEE------
Confidence            579999999999999999999876432            33444443    2221              01111      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH--HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~--~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   ..+..+.||||||+.... .......+....  ....+|++++|+|+..+.+..+.     .+...+
T Consensus        46 -------------~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~-----~i~~~l  106 (439)
T 1mky_A           46 -------------WYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE-----SLADFL  106 (439)
T ss_dssp             -------------ETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHH-----HHHHHH
T ss_pred             -------------ECCeEEEEEECCCccccc-cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHH
Confidence                         234578999999997532 111112222211  12458999999999887765442     223345


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|++||+||+|+....    .......+                  .    . .+..+++++||++|.|+.+|+++
T Consensus       107 ~~~~~p~ilv~NK~D~~~~~----~~~~~~~~------------------~----~-lg~~~~~~iSA~~g~gv~~L~~~  159 (439)
T 1mky_A          107 RKSTVDTILVANKAENLREF----EREVKPEL------------------Y----S-LGFGEPIPVSAEHNINLDTMLET  159 (439)
T ss_dssp             HHHTCCEEEEEESCCSHHHH----HHHTHHHH------------------G----G-GSSCSCEECBTTTTBSHHHHHHH
T ss_pred             HHcCCCEEEEEeCCCCcccc----HHHHHHHH------------------H----h-cCCCCEEEEeccCCCCHHHHHHH
Confidence            56789999999999975320    00000100                  0    0 12336899999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |...+++.
T Consensus       160 i~~~l~~~  167 (439)
T 1mky_A          160 IIKKLEEK  167 (439)
T ss_dssp             HHHHHHHT
T ss_pred             HHHhcccc
Confidence            99888753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.76  E-value=3.9e-19  Score=171.09  Aligned_cols=163  Identities=23%  Similarity=0.282  Sum_probs=104.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|.+|||||||+|+|++....             +...|+++ ++   ..              .+.+.     
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~-------------v~~~~g~t-~~---~~--------------~~~~~-----   46 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQR-------------VGNWAGVT-VE---RK--------------EGQFS-----   46 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEE-------------EEECTTSS-SE---EE--------------EEEEE-----
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcc-------------cCCCCCee-EE---EE--------------EEEEE-----
Confidence            478999999999999999999987532             23333332 10   00              01111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hchHHHHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~~~~~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                    ..+..+.||||||+.++...   ......+...+ ....+|++|+|+|+....       ..++..
T Consensus        47 --------------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~-------~~~~~~  105 (274)
T 3i8s_A           47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE-------RNLYLT  105 (274)
T ss_dssp             --------------CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHH-------HHHHHH
T ss_pred             --------------eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChH-------HHHHHH
Confidence                          13467899999999886421   22333333333 345789999999997521       113344


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+...++|+|+|+||+|+.........   ...+.                      ..+ ..+++++||++|.|+.++
T Consensus       106 ~~l~~~~~p~ivv~NK~Dl~~~~~~~~~---~~~l~----------------------~~l-g~~~i~~SA~~g~gi~el  159 (274)
T 3i8s_A          106 LQLLELGIPCIVALNMLDIAEKQNIRIE---IDALS----------------------ARL-GCPVIPLVSTRGRGIEAL  159 (274)
T ss_dssp             HHHHHHTCCEEEEEECHHHHHHTTEEEC---HHHHH----------------------HHH-TSCEEECCCGGGHHHHHH
T ss_pred             HHHHhcCCCEEEEEECccchhhhhHHHH---HHHHH----------------------Hhc-CCCEEEEEcCCCCCHHHH
Confidence            4556679999999999997654321100   11111                      111 267999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|.+.++.
T Consensus       160 ~~~i~~~~~~  169 (274)
T 3i8s_A          160 KLAIDRYKAN  169 (274)
T ss_dssp             HHHHHTCCCC
T ss_pred             HHHHHHHHhc
Confidence            9999876653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.76  E-value=4.2e-18  Score=149.88  Aligned_cols=161  Identities=20%  Similarity=0.245  Sum_probs=98.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||+|+|++..+..        ..|.+.       +.                      .....
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~~~t~~-------~~----------------------~~~~~   47 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT--------TIPTIG-------FN----------------------VETVT   47 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--------CCCCSS-------EE----------------------EEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC--------cCCcCc-------cc----------------------eEEEE
Confidence            356889999999999999999998765421        001110       00                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+..+....      ...  ...+|++++|+|+....+.....   ..+...
T Consensus        48 ----------------~~~~~~~~~Dt~G~~~~~~~~------~~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~  100 (171)
T 1upt_A           48 ----------------YKNLKFQVWDLGGLTSIRPYW------RCY--YSNTDAVIYVVDSCDRDRIGISK---SELVAM  100 (171)
T ss_dssp             ----------------ETTEEEEEEEECCCGGGGGGG------GGG--CTTCSEEEEEEETTCCTTHHHHH---HHHHHH
T ss_pred             ----------------ECCEEEEEEECCCChhhhHHH------HHH--hccCCEEEEEEECCCHHHHHHHH---HHHHHH
Confidence                            124688999999997652110      001  13479999999997654322211   112222


Q ss_pred             Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..   .++|+++|+||+|+.......++...+.                     ..... ....+++++||++|.|+.+
T Consensus       101 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A          101 LEEEELRKAILVVFANKQDMEQAMTSSEMANSLG---------------------LPALK-DRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GGGCT-TSCEEEEECCTTTCTTHHH
T ss_pred             HhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhC---------------------chhcc-CCceEEEECcCCCCcCHHH
Confidence            222   5799999999999987532222221111                     00000 1234799999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          304 YFKAVEESAQ  313 (426)
Q Consensus       304 l~~~l~~~~~  313 (426)
                      ++++|.+.+.
T Consensus       159 l~~~l~~~i~  168 (171)
T 1upt_A          159 AMEWLVETLK  168 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.76  E-value=2.1e-18  Score=151.04  Aligned_cols=163  Identities=12%  Similarity=0.095  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+|+|++.......              ..+........                 +...    
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~-----------------~~~~----   47 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY--------------DPTIEDSYRKQ-----------------VEVD----   47 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC--------------CCCSEEEEEEE-----------------EESS----
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCccceEEEE-----------------EEEC----
Confidence            468999999999999999999986543211              11110000000                 0000    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                    .....+.||||||+.++..      .....+.  .+|++++|+|+....+......-...+.....
T Consensus        48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  105 (167)
T 1c1y_A           48 --------------CQQCMLEILDTAGTEQFTA------MRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKD  105 (167)
T ss_dssp             --------------SCEEEEEEEEECSSCSSTT------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             --------------CEEEEEEEEECCChHHHHH------HHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence                          1235789999999877521      1111222  36899999998753211111000011111112


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+.......  ......+.                      ..+...+++++||++|.|+++++++|
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A          106 TEDVPMILVGNKCDLEDERVVG--KEQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             cCCCcEEEEEECccccccccCC--HHHHHHHH----------------------HHccCCcEEEecCCCCCCHHHHHHHH
Confidence            3479999999999997643210  01111111                      11235679999999999999999999


Q ss_pred             HHHH
Q 014354          309 EESA  312 (426)
Q Consensus       309 ~~~~  312 (426)
                      .+.+
T Consensus       162 ~~~i  165 (167)
T 1c1y_A          162 VRQI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.75  E-value=7.4e-18  Score=149.99  Aligned_cols=172  Identities=15%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||++++++..+.....              .+......                 ..+..   
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~--------------~t~~~~~~-----------------~~~~~---   51 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV--------------PTVFDNFS-----------------ANVVV---   51 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-----------------CCCC----
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------------CeeeeeEE-----------------EEEEE---
Confidence            356789999999999999999999876432111              11100000                 00000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+.++.....      .  ....+|++++|+|+....+....   ...+...
T Consensus        52 ---------------~~~~~~~~i~Dt~G~~~~~~~~~------~--~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~  105 (182)
T 3bwd_D           52 ---------------NGATVNLGLWDTAGQEDYNRLRP------L--SYRGADVFILAFSLISKASYENV---SKKWIPE  105 (182)
T ss_dssp             ---------------------CEEECCCC-CTTTTTGG------G--GGTTCSEEEEEEETTCHHHHHHH---HHTHHHH
T ss_pred             ---------------CCEEEEEEEEECCCChhhhhhHH------h--hccCCCEEEEEEECCCHHHHHHH---HHHHHHH
Confidence                           02336788999999977521110      0  11347999999998653221111   0012222


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +..  .++|+++|+||+|+...........           .   ...+....+..+...++..+++++||++|.|+.++
T Consensus       106 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-----------~---~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (182)
T 3bwd_D          106 LKHYAPGVPIVLVGTKLDLRDDKQFFIDHP-----------G---AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV  171 (182)
T ss_dssp             HHHHCTTCCEEEEEECHHHHTCHHHHHHC----------------CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred             HHHhCCCCCEEEEEechhhhcCcccccccc-----------c---CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHH
Confidence            222  3799999999999876542210000           0   00000000001111223357999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      +++|.+.+
T Consensus       172 ~~~l~~~i  179 (182)
T 3bwd_D          172 FDAAIRVV  179 (182)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.75  E-value=2e-18  Score=153.86  Aligned_cols=158  Identities=18%  Similarity=0.273  Sum_probs=95.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+|+|++|||||||+|+|++...+.            +...+.++    ++..              .+.+.    
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------~~~~~~~t----~~~~--------------~~~~~----   48 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT----RDVL--------------REHIH----   48 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC----CSCE--------------EEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcce------------eeCCCCce----ecee--------------eEEEE----
Confidence            45789999999999999999999875331            23333332    0000              00010    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHH-HHHHHH-HhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA-IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~-~l~~~~-~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.+|||||+.+..  ..... .+...+ ....+|++++|+|++...+...     ..++.
T Consensus        49 ---------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-----~~~~~  106 (172)
T 2gj8_A           49 ---------------IDGMPLHIIDTAGLREAS--DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-----AEIWP  106 (172)
T ss_dssp             ---------------ETTEEEEEEECCCCSCCS--SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-----HHHCH
T ss_pred             ---------------ECCeEEEEEECCCcccch--hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-----HHHHH
Confidence                           123468899999997642  11111 111111 1245799999999987654322     11112


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .+.   ..++|+|+|+||+|+.....  .+                         +    . ....+++++||++|.|+.
T Consensus       107 ~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~-------------------------~----~-~~~~~~~~~SA~~g~gv~  154 (172)
T 2gj8_A          107 EFIARLPAKLPITVVRNKADITGETL--GM-------------------------S----E-VNGHALIRLSARTGEGVD  154 (172)
T ss_dssp             HHHHHSCTTCCEEEEEECHHHHCCCC--EE-------------------------E----E-ETTEEEEECCTTTCTTHH
T ss_pred             HHHHhcccCCCEEEEEECccCCcchh--hh-------------------------h----h-ccCCceEEEeCCCCCCHH
Confidence            222   23689999999999743210  00                         0    0 123569999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          303 AYFKAVEESAQ  313 (426)
Q Consensus       303 ~l~~~l~~~~~  313 (426)
                      +++++|.+.+.
T Consensus       155 ~l~~~l~~~~~  165 (172)
T 2gj8_A          155 VLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.74  E-value=4.2e-18  Score=151.89  Aligned_cols=166  Identities=15%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+...              .+.++.......                 +..   
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~---   61 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRKK-----------------VVL---   61 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCTTCCEEEEEE-----------------EEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCc--------------CCCccceEEEEE-----------------EEE---
Confidence            3557999999999999999999998764321              111110000000                 000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~  225 (426)
                                     ....+.+.||||||+.++.      ......+  ..+|++++|+|+......... ...+ .+..
T Consensus        62 ---------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~  117 (187)
T 2a9k_A           62 ---------------DGEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAAT-ADFREQILR  117 (187)
T ss_dssp             ---------------TTEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHHH-HHHHHHHHH
T ss_pred             ---------------CCEEEEEEEEECCCCcccH------HHHHHHh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence                           0123578999999987652      1111222  236899999999753221111 1111 1111


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....++|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.+++
T Consensus       118 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A          118 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             HHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHH
T ss_pred             hcCCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence            1123479999999999987543210  011111110                     1  13579999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+...
T Consensus       173 ~~l~~~i~~~  182 (187)
T 2a9k_A          173 FDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.74  E-value=1.4e-18  Score=156.64  Aligned_cols=164  Identities=15%  Similarity=0.215  Sum_probs=98.8

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ..++..+|+|+|.+|||||||+|+|++..+....             .| +.....                      ..
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~----------------------~~   61 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDM-------------IP-TVGFNM----------------------RK   61 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------CC-CCSEEE----------------------EE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCcc-------------CC-CCceeE----------------------EE
Confidence            3455689999999999999999999987643211             00 110000                      00


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                      ..                ..+..+.||||||+.++..      .....+  ..+|++++|+|+....+...   ....+.
T Consensus        62 ~~----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~s~~~---~~~~~~  114 (188)
T 1zd9_A           62 IT----------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEKIEA---SKNELH  114 (188)
T ss_dssp             EE----------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGGHHH---HHHHHH
T ss_pred             EE----------------eCCEEEEEEECCCCHhHHH------HHHHHH--ccCCEEEEEEECCCHHHHHH---HHHHHH
Confidence            00                2346889999999876421      111112  45799999999975432211   111112


Q ss_pred             HHHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          225 SILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       225 ~~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      ..+.   ..++|++||+||+|+.......++...+.                     ... ......+++++||++|.|+
T Consensus       115 ~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A          115 NLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---------------------LSA-IQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             HHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECCTTTCTTH
T ss_pred             HHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---------------------hhh-hccCCeeEEEEECCCCCCH
Confidence            2222   25799999999999986532222221110                     000 0012357899999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQ  313 (426)
Q Consensus       302 ~~l~~~l~~~~~  313 (426)
                      .+++++|.+.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.74  E-value=2e-18  Score=150.77  Aligned_cols=163  Identities=13%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+|+|++..+....              ..+........                 +..     
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~-----------------~~~-----   46 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--------------DPTIEDFYRKE-----------------IEV-----   46 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--------------CTTCCEEEEEE-----------------EEE-----
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccC--------------CCCcceeEEEE-----------------EEE-----
Confidence            468999999999999999999987643211              00110000000                 000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ......+.||||||+.++.      ......+  ..++++++|+|+....+..........+.....
T Consensus        47 -------------~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  105 (167)
T 1kao_A           47 -------------DSSPSVLEILDTAGTEQFA------SMRDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR  105 (167)
T ss_dssp             -------------TTEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             -------------CCEEEEEEEEECCCchhhH------HHHHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence                         0123468999999987752      1111122  235899999999753321111111111222222


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..+.|+++|+||+|+.......  ......+..                     . + ..+++++||++|.|+.+++++|
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A          106 YEKVPVILVGNKVDLESEREVS--SSEGRALAE---------------------E-W-GCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             TSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H-H-TSCEEEECTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCcccccccCC--HHHHHHHHH---------------------H-h-CCCEEEecCCCCcCHHHHHHHH
Confidence            3579999999999987543211  001111110                     1 1 3579999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T 1kao_A          161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.74  E-value=7.6e-18  Score=174.10  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=103.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+.+|+|+|.||||||||+|+|++..+..            ++.+|++|    ++.+              .+.+.    
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------vs~~~gTT----~d~~--------------~~~i~----  287 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTT----RDVI--------------SEEIV----  287 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCS----SCSC--------------CEEEE----
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------cCCCCCee----eeeE--------------EEEEe----
Confidence            45789999999999999999999986442            55666665    2211              11111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccch-hchH-HHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTW-SASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~-~~~~-~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                     ..+..+.||||||+. ++... ...+ ......+  ..+|++|+|+|+........     ..++
T Consensus       288 ---------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~-----~~il  345 (482)
T 1xzp_A          288 ---------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEED-----RKIL  345 (482)
T ss_dssp             ---------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHH-----HHHH
T ss_pred             ---------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHH-----HHHH
Confidence                           134679999999998 54210 0111 1112222  34699999999987655432     1222


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ..+  .++|+|+|+||+|+.......    .+..+                        +....+++++||++|.|+++|
T Consensus       346 ~~l--~~~piivV~NK~DL~~~~~~~----~~~~~------------------------~~~~~~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          346 ERI--KNKRYLVVINKVDVVEKINEE----EIKNK------------------------LGTDRHMVKISALKGEGLEKL  395 (482)
T ss_dssp             HHH--TTSSEEEEEEECSSCCCCCHH----HHHHH------------------------HTCSTTEEEEEGGGTCCHHHH
T ss_pred             HHh--cCCCEEEEEECcccccccCHH----HHHHH------------------------hcCCCcEEEEECCCCCCHHHH
Confidence            323  378999999999997542111    11100                        011257999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|.+.+..
T Consensus       396 ~~~l~~~~~~  405 (482)
T 1xzp_A          396 EESIYRETQE  405 (482)
T ss_dssp             HHHHHHHTHH
T ss_pred             HHHHHHHHhh
Confidence            9999987653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.74  E-value=3.8e-18  Score=149.57  Aligned_cols=158  Identities=13%  Similarity=0.100  Sum_probs=86.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+|+|++.....            ....+.++ ..   .                .+..     
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~-~~---~----------------~~~~-----   44 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP------------EAEAAGHT-YD---R----------------SIVV-----   44 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------------------CE-EE---E----------------EEEE-----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC------------CCCccccc-eE---E----------------EEEE-----
Confidence            4689999999999999999998765332            11111111 00   0                0000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ......+.+|||||+..+.       .+...+ ...++++++|+|.....   .+.. ....+..+.
T Consensus        45 -------------~~~~~~~~i~D~~g~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~---s~~~-~~~~~~~~~   99 (166)
T 3q72_A           45 -------------DGEEASLMVYDIWEQDGGR-------WLPGHC-MAMGDAYVIVYSVTDKG---SFEK-ASELRVQLR   99 (166)
T ss_dssp             -------------TTEEEEEEEEECC-----------------------CCEEEEEEETTCHH---HHHH-HHHHHHHHH
T ss_pred             -------------CCEEEEEEEEECCCCccch-------hhhhhh-hhhCCEEEEEEECCCHH---HHHH-HHHHHHHHH
Confidence                         0233578999999987652       111111 13468999999987532   2111 111222222


Q ss_pred             ----hccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          229 ----KTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       229 ----~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                          ..++|+++|+||+|+....... .....+   .                      . ....+++++||++|.|+.+
T Consensus       100 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~----------------------~-~~~~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A          100 RARQTDDVPIILVGNKSDLVRSREVSVDEGRAC---A----------------------V-VFDCKFIETSAALHHNVQA  153 (166)
T ss_dssp             HCC---CCCEEEEEECTTCCSSCCSCHHHHHHH---H----------------------H-HTTCEEEECBGGGTBSHHH
T ss_pred             HhcCCCCCCEEEEEeccccccccccCHHHHHHH---H----------------------H-HhCCcEEEeccCCCCCHHH
Confidence                2478999999999998643221 111111   0                      0 1236799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|.+.+..
T Consensus       154 l~~~l~~~~~~  164 (166)
T 3q72_A          154 LFEGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.74  E-value=2.9e-18  Score=153.02  Aligned_cols=175  Identities=17%  Similarity=0.194  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+.....       |.+.. .+...                       +..    
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~-------~t~~~-~~~~~-----------------------~~~----   48 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVFD-NYSAN-----------------------VMV----   48 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-------CCSCC-EEEEE-----------------------EEE----
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC-------Ccccc-eeEEE-----------------------EEE----
Confidence            34789999999999999999999876432110       00000 00000                       000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++......        ....+|++++|+|+....+...   ....+...+
T Consensus        49 --------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~~  103 (186)
T 1mh1_A           49 --------------DGKPVNLGLWDTAGQEDYDRLRPL--------SYPQTDVSLICFSLVSPASFEN---VRAKWYPEV  103 (186)
T ss_dssp             --------------TTEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHH---HHHTHHHHH
T ss_pred             --------------CCEEEEEEEEECCCCHhHHHHHHH--------hccCCcEEEEEEECCChhhHHH---HHHHHHHHH
Confidence                          012357889999999775211100        1134799999999975332211   111122223


Q ss_pred             hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ..  .++|+++|+||+|+..............            ...+....+..+...++..+++++||++|.|+.+++
T Consensus       104 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  171 (186)
T 1mh1_A          104 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF  171 (186)
T ss_dssp             HHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred             HHhCCCCCEEEEeEcccccccchhhhhhcccc------------cccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence            32  2899999999999876542211111000            000000001111112233479999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ++|.+.+.+
T Consensus       172 ~~l~~~~~~  180 (186)
T 1mh1_A          172 DEAIRAVLC  180 (186)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHhc
Confidence            999887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.74  E-value=3e-18  Score=177.01  Aligned_cols=164  Identities=18%  Similarity=0.216  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+.+|+|+|.||||||||+|+|++.....            ++..++++    ++.+              ...+.    
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------vs~~~gtT----~d~~--------------~~~i~----  277 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------VSHMPGTT----RDYI--------------EECFI----  277 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EEEEE----
Confidence            46789999999999999999999875332            44445444    2211              00011    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH-HHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l-~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.||||||+.++.  ....... ..... ...+|++|+|+|++....... ......++.
T Consensus       278 ---------------~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~  339 (476)
T 3gee_A          278 ---------------HDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKA  339 (476)
T ss_dssp             ---------------ETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHH
T ss_pred             ---------------ECCeEEEEEECCCCCcch--hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHH
Confidence                           134679999999997642  1111111 11111 144899999999988765532 111122333


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+.  ++|+|+|+||+|+........  +.+.                         .. .+.+++++||++|.|+++|+
T Consensus       340 ~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~-------------------------~~-~~~~~i~vSAktg~GI~eL~  389 (476)
T 3gee_A          340 AHP--AAKFLTVANKLDRAANADALI--RAIA-------------------------DG-TGTEVIGISALNGDGIDTLK  389 (476)
T ss_dssp             HCT--TSEEEEEEECTTSCTTTHHHH--HHHH-------------------------HH-HTSCEEECBTTTTBSHHHHH
T ss_pred             hcC--CCCEEEEEECcCCCCccchhH--HHHH-------------------------hc-CCCceEEEEECCCCCHHHHH
Confidence            333  789999999999987653211  1111                         11 12579999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+.
T Consensus       390 ~~i~~~~~  397 (476)
T 3gee_A          390 QHMGDLVK  397 (476)
T ss_dssp             HHHTHHHH
T ss_pred             HHHHHHHh
Confidence            99998886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.74  E-value=3.4e-18  Score=163.92  Aligned_cols=164  Identities=20%  Similarity=0.257  Sum_probs=103.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|++|||||||+|+|++....             +...|..+ ++..                 .+.+.    
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~-------------~~~~~~~t-~~~~-----------------~~~~~----   46 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQH-------------VGNWPGVT-VEKK-----------------EGIME----   46 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEE-------------EEECTTSS-CEEE-----------------EEEEE----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcc-------------cCCCCCeE-EEee-----------------EEEEE----
Confidence            3578999999999999999999987642             12222221 1000                 00111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.||||||+..+.............+....+|++++|+|+.....       .++....+
T Consensus        47 ---------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~-------~~~~~~~~  104 (271)
T 3k53_A           47 ---------------YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR-------NLFLTLEL  104 (271)
T ss_dssp             ---------------ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH-------HHHHHHHH
T ss_pred             ---------------ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh-------hHHHHHHH
Confidence                           13356899999999886433322222333344466899999999976321       12233334


Q ss_pred             hhcc-CCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          228 YKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       228 ~~~~-~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ...+ +|+++|+||+|+.........   ...+              .+        .. ..+++++||++|.|+.++++
T Consensus       105 ~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~l--------------~~--------~l-g~~~~~~Sa~~g~gi~~l~~  158 (271)
T 3k53_A          105 FEMEVKNIILVLNKFDLLKKKGAKID---IKKM--------------RK--------EL-GVPVIPTNAKKGEGVEELKR  158 (271)
T ss_dssp             HHTTCCSEEEEEECHHHHHHHTCCCC---HHHH--------------HH--------HH-SSCEEECBGGGTBTHHHHHH
T ss_pred             HhcCCCCEEEEEEChhcCcccccHHH---HHHH--------------HH--------Hc-CCcEEEEEeCCCCCHHHHHH
Confidence            4556 999999999997653321100   1111              11        11 36799999999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      ++...+..
T Consensus       159 ~i~~~~~~  166 (271)
T 3k53_A          159 MIALMAEG  166 (271)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.74  E-value=3.6e-18  Score=151.54  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|.+|||||||+|+|++..+..              ..+.++.....                  ..+..  
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~------------------~~~~~--   52 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS--------------DYDPTIEDSYT------------------KICSV--   52 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCS--------------SCCTTCCEEEE------------------EEEEE--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCcc--------------ccCCCcCceEE------------------EEEEE--
Confidence            356799999999999999999999875332              11112110000                  00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .             .....+.||||||+.++.   ....   ..+  ..+|++++|+|+...........-...++..
T Consensus        53 --~-------------~~~~~~~~~Dt~G~~~~~---~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  109 (181)
T 2fn4_A           53 --D-------------GIPARLDILDTAGQEEFG---AMRE---QYM--RAGHGFLLVFAINDRQSFNEVGKLFTQILRV  109 (181)
T ss_dssp             --T-------------TEEEEEEEEECCCTTTTS---CCHH---HHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             --C-------------CEEEEEEEEECCCchhhH---HHHH---HHH--hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence              0             122578899999987752   1111   112  2368999999987532211111000111122


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|+++|+||+|+........  .....+.                      . ....+++++||++|.|+.++++
T Consensus       110 ~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gv~~l~~  164 (181)
T 2fn4_A          110 KDRDDFPVVLVGNKADLESQRQVPR--SEASAFG----------------------A-SHHVAYFEASAKLRLNVDEAFE  164 (181)
T ss_dssp             HTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHH
T ss_pred             cCCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------H-HcCCeEEEecCCCCCCHHHHHH
Confidence            2345789999999999876432210  0111110                      0 1235799999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.+.+...
T Consensus       165 ~l~~~~~~~  173 (181)
T 2fn4_A          165 QLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.74  E-value=9.8e-18  Score=152.66  Aligned_cols=167  Identities=18%  Similarity=0.223  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|++|||||||+|+|++..+.....       |.+       ..+....                .+...  
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~~~----------------~~~~~--   53 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-------ATI-------GADFLTK----------------EVMVD--   53 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC-------CCC-------SEEEEEE----------------EEESS--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC-------Ccc-------cceEEEE----------------EEEEC--
Confidence            356789999999999999999999876442110       000       0000000                00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+..+......      .  ...+|++|+|+|+......... ...+..+..
T Consensus        54 ----------------~~~~~~~l~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~  108 (207)
T 1vg8_A           54 ----------------DRLVTMQIWDTAGQERFQSLGVA------F--YRGADCCVLVFDVTAPNTFKTL-DSWRDEFLI  108 (207)
T ss_dssp             ----------------SCEEEEEEEEECSSGGGSCSCCG------G--GTTCSEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred             ----------------CEEEEEEEEeCCCcHHHHHhHHH------H--HhCCcEEEEEEECCCHHHHHHH-HHHHHHHHH
Confidence                            12357899999998765221110      1  1347999999999754321111 000111111


Q ss_pred             Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ..    ..++|++||+||+|+............+   .                      ......+++++||++|.|+.
T Consensus       109 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~----------------------~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A          109 QASPRDPENFPFVVLGNKIDLENRQVATKRAQAW---C----------------------YSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             HHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH---H----------------------HHTTSCCEEECBTTTTBSHH
T ss_pred             hcccccCCCCcEEEEEECCCCcccccCHHHHHHH---H----------------------HhcCCceEEEEeCCCCCCHH
Confidence            11    1478999999999998432211111111   0                      11234679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+...
T Consensus       164 ~l~~~l~~~~~~~  176 (207)
T 1vg8_A          164 QAFQTIARNALKQ  176 (207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.74  E-value=8e-18  Score=146.57  Aligned_cols=157  Identities=22%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+++|.+|||||||+++|++.....            ....+.++ .+                    .......   
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~-~~--------------------~~~~~~~---   45 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------VADVPGVT-RD--------------------LKEGVVE---   45 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------------------C--------------------CEEEEEE---
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeee------------ccCCCCce-ec--------------------ceEEEEE---
Confidence            579999999999999999999876321            11111111 00                    0000000   


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   ..+..+.||||||+.....   ....+.....  ...+|++++|+|+.........     .+...+
T Consensus        46 -------------~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~  104 (161)
T 2dyk_A           46 -------------TDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-----EVAEYL  104 (161)
T ss_dssp             -------------ETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-----HHHHHH
T ss_pred             -------------eCCceEEEEECCCCCCccc---hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-----HHHHHH
Confidence                         1235789999999976421   1111222211  1457999999999887554331     223334


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|+++|+||+|+.....      ...              .+    .     .++..+++++||++|.|+.+++++
T Consensus       105 ~~~~~p~ilv~nK~Dl~~~~~------~~~--------------~~----~-----~~~~~~~~~~Sa~~~~gv~~l~~~  155 (161)
T 2dyk_A          105 RRKGKPVILVATKVDDPKHEL------YLG--------------PL----Y-----GLGFGDPIPTSSEHARGLEELLEA  155 (161)
T ss_dssp             HHHTCCEEEEEECCCSGGGGG------GCG--------------GG----G-----GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred             HhcCCCEEEEEECcccccchH------hHH--------------HH----H-----hCCCCCeEEEecccCCChHHHHHH
Confidence            456899999999999876521      000              00    0     122337999999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |.+.+
T Consensus       156 l~~~l  160 (161)
T 2dyk_A          156 IWERL  160 (161)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=2e-18  Score=154.80  Aligned_cols=166  Identities=23%  Similarity=0.278  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++....             +...|..+ ++..                 .+.+.    
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~-------------~~~~~~~t-~~~~-----------------~~~~~----   50 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVY-------------IGNWPGVT-VEKK-----------------EGEFE----   50 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEE-------------EEECTTSC-CEEE-----------------EEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc-------------ccCCCCee-ccce-----------------EEEEE----
Confidence            4578999999999999999999986422             11222211 0000                 00010    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.||||||+..+.............+....++++++|+|+...      . ....+...+
T Consensus        51 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~-~~~~~~~~~  108 (188)
T 2wjg_A           51 ---------------YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL------E-RNLYLTLQL  108 (188)
T ss_dssp             ---------------ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH------H-HHHHHHHHH
T ss_pred             ---------------eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH------H-HHHHHHHHH
Confidence                           133678999999998763221111122223333457999999998641      1 112233445


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|+|+|+||+|+.......   .....+              .+.        + ..+++++||++|.|+.+++++
T Consensus       109 ~~~~~piilv~nK~Dl~~~~~~~---~~~~~~--------------~~~--------~-~~~~~~~Sa~~~~~v~~l~~~  162 (188)
T 2wjg_A          109 MEMGANLLLALNKMDLAKSLGIE---IDVDKL--------------EKI--------L-GVKVVPLSAAKKMGIEELKKA  162 (188)
T ss_dssp             HTTTCCEEEEEECHHHHHHTTCC---CCHHHH--------------HHH--------H-TSCEEECBGGGTBSHHHHHHH
T ss_pred             HhcCCCEEEEEEhhhccccccch---HHHHHH--------------HHH--------h-CCCeEEEEecCCCCHHHHHHH
Confidence            55789999999999975432111   011111              111        1 257999999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          308 VEESAQEFM  316 (426)
Q Consensus       308 l~~~~~~~~  316 (426)
                      |...+....
T Consensus       163 i~~~~~~~~  171 (188)
T 2wjg_A          163 ISIAVKDKK  171 (188)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHhcc
Confidence            998876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.74  E-value=2.4e-18  Score=157.55  Aligned_cols=173  Identities=16%  Similarity=0.191  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||++++++........       |.+. ..+...                       +...  
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~~-----------------------~~~~--   74 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVF-DNYSAN-----------------------VMVD--   74 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-------CCSE-EEEEEE-----------------------EECC--
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-------Ceec-ceeEEE-----------------------EEEC--
Confidence            456899999999999999999999775432111       0000 000000                       0000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ...+.+.||||||+.++......        ....+|++++|+|+....+...   ....+...
T Consensus        75 ----------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~  127 (204)
T 4gzl_A           75 ----------------GKPVNLGLWDTAGLEDYDRLRPL--------SYPQTDVFLICFSLVSPASFEN---VRAKWYPE  127 (204)
T ss_dssp             -----------------CEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHH---HHHTHHHH
T ss_pred             ----------------CEEEEEEEEECCCchhhHHHHHH--------HhccCCEEEEEEECCCHHHHHH---HHHHHHHH
Confidence                            12356779999999765211110        1134799999999975432211   11112223


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +..  .++|+|||+||+|+.......+......            ...+....+..+...++..+++++||++|.|+.++
T Consensus       128 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  195 (204)
T 4gzl_A          128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  195 (204)
T ss_dssp             HHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HHHhCCCCCEEEEEechhhccchhhhhhhhccc------------cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHH
Confidence            333  3899999999999987653222211100            00011111111222344567999999999999999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      +++|.+.
T Consensus       196 ~~~l~~~  202 (204)
T 4gzl_A          196 FDEAIRA  202 (204)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.74  E-value=2.3e-17  Score=170.85  Aligned_cols=116  Identities=19%  Similarity=0.243  Sum_probs=81.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +..+.||||||+.++.      ..+...  ...+|++|+|||+..+..++++     ..+..+...++|.|+|+||+|+.
T Consensus        72 ~~~i~iiDtPGh~~~~------~~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~ip~IvviNK~Dl~  138 (482)
T 1wb1_A           72 NYRITLVDAPGHADLI------RAVVSA--ADIIDLALIVVDAKEGPKTQTG-----EHMLILDHFNIPIIVVITKSDNA  138 (482)
T ss_dssp             TEEEEECCCSSHHHHH------HHHHHH--TTSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCBCEEEECTTSS
T ss_pred             CEEEEEEECCChHHHH------HHHHHH--HhhCCEEEEEEecCCCccHHHH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence            4689999999986641      122222  2458999999999988776653     23344566789999999999999


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      .........+.+..+...                    . .+...+++++||++|.|+.+|+++|...++
T Consensus       139 ~~~~~~~~~~~l~~~l~~--------------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          139 GTEEIKRTEMIMKSILQS--------------------THNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHH--------------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhh--------------------hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            865444444444322211                    1 123578999999999999999999998776

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.74  E-value=1.2e-17  Score=149.35  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=94.7

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ....+..+|+|+|.+|||||||+|+|++..+..        ..|...    ..                         ..
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~t~~----~~-------------------------~~   58 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH--------TSPTIG----SN-------------------------VE   58 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEE--------EECCSS----SS-------------------------CE
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCc--------cCCcCc----ee-------------------------eE
Confidence            345567899999999999999999999876411        001110    00                         00


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      ...                ..+..+.||||||+.++....      ...  ...+|++++|+|+....+.....   ..+
T Consensus        59 ~~~----------------~~~~~~~i~Dt~G~~~~~~~~------~~~--~~~~d~ii~v~D~~~~~s~~~~~---~~~  111 (181)
T 2h17_A           59 EIV----------------INNTRFLMWDIGGQESLRSSW------NTY--YTNTEFVIVVVDSTDRERISVTR---EEL  111 (181)
T ss_dssp             EEE----------------ETTEEEEEEEESSSGGGTCGG------GGG--GTTCCEEEEEEETTCTTTHHHHH---HHH
T ss_pred             EEE----------------ECCEEEEEEECCCCHhHHHHH------HHH--hccCCEEEEEEECCCHHHHHHHH---HHH
Confidence            000                133689999999997752111      011  13479999999998753322211   111


Q ss_pred             HHHHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          224 CSILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       224 ~~~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ...+.   ..++|+|+|+||+|+.......++.+.+.                     ... ......+++++||++|.|
T Consensus       112 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A          112 YKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LTS-IKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             HHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECBTTTTBT
T ss_pred             HHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC---------------------ccc-ccCCceEEEEccCCCCcC
Confidence            22222   36799999999999976422212211110                     000 001124799999999999


Q ss_pred             HHHHHHHHHH
Q 014354          301 IEAYFKAVEE  310 (426)
Q Consensus       301 v~~l~~~l~~  310 (426)
                      +.+++++|.+
T Consensus       170 i~~l~~~l~~  179 (181)
T 2h17_A          170 LCQGLEWMMS  179 (181)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.74  E-value=7.2e-18  Score=151.96  Aligned_cols=165  Identities=17%  Similarity=0.255  Sum_probs=96.2

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ....+..+|+|+|.+|||||||+|+|++......             ....+..+..                   ..+.
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~~t~~~~~-------------------~~~~   63 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-------------NILPTIGFSI-------------------EKFK   63 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCS-------------SCCCCSSEEE-------------------EEEE
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCC-------------CcCCccceeE-------------------EEEE
Confidence            3345678999999999999999999998762110             0000110000                   0000


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                         ..+..+.||||||+.++....      ...+  ..+|++++|+|+....+   +......+
T Consensus        64 -------------------~~~~~~~l~Dt~G~~~~~~~~------~~~~--~~~d~ii~v~d~~~~~s---~~~~~~~~  113 (190)
T 2h57_A           64 -------------------SSSLSFTVFDMSGQGRYRNLW------EHYY--KEGQAIIFVIDSSDRLR---MVVAKEEL  113 (190)
T ss_dssp             -------------------CSSCEEEEEEECCSTTTGGGG------GGGG--GGCSEEEEEEETTCHHH---HHHHHHHH
T ss_pred             -------------------ECCEEEEEEECCCCHHHHHHH------HHHH--hcCCEEEEEEECCCHHH---HHHHHHHH
Confidence                               134689999999987752111      0111  34799999999975321   11111111


Q ss_pred             HHHHhh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeeccc
Q 014354          224 CSILYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS  297 (426)
Q Consensus       224 ~~~l~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~  297 (426)
                      ...+..     .++|+++|+||+|+.......++.+.+.                       +..+ ....+++++||++
T Consensus       114 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A          114 DTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC-----------------------LENIKDKPWHICASDAIK  170 (190)
T ss_dssp             HHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-----------------------GGGCCSSCEEEEECBTTT
T ss_pred             HHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-----------------------hhhccCCceEEEEccCCC
Confidence            222222     5789999999999986532222221110                       0011 1235799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 014354          298 GAGIEAYFKAVEESAQ  313 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~  313 (426)
                      |.|+.+++++|.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.74  E-value=1.4e-17  Score=151.79  Aligned_cols=174  Identities=13%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+++|++..+....             .| +.......                 .+..   
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~~~-----------------~~~~---   68 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-------------VP-TVFENYIA-----------------DIEV---   68 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-------------CC-SSCCCCEE-----------------EEEE---
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-------------CC-cccceEEE-----------------EEEE---
Confidence            44578999999999999999999987643211             01 11000000                 0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+.++......        ....+|++++|+|+....   .+......+...
T Consensus        69 ---------------~~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~  122 (201)
T 2gco_A           69 ---------------DGKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSIDSPD---SLENIPEKWTPE  122 (201)
T ss_dssp             ---------------TTEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHH---HHHHHHHTHHHH
T ss_pred             ---------------CCEEEEEEEEECCCchhHHHHHHH--------hcCCCCEEEEEEECCCHH---HHHHHHHHHHHH
Confidence                           012357899999998765211110        113479999999986532   211110112222


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +..  .++|+++|+||+|+.......+......       .     ..+....+..+...++..+++++||++|.|+.++
T Consensus       123 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  190 (201)
T 2gco_A          123 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMK-------Q-----EPVRSEEGRDMANRISAFGYLECSAKTKEGVREV  190 (201)
T ss_dssp             HHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTT-------C-----CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HHHhCCCCCEEEEEecHHhhcCccchhhhcccc-------c-----CcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence            333  2799999999999987643222111100       0     0000011111112223347999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      +++|.+.+
T Consensus       191 ~~~i~~~~  198 (201)
T 2gco_A          191 FEMATRAG  198 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.73  E-value=1.6e-17  Score=170.28  Aligned_cols=176  Identities=20%  Similarity=0.261  Sum_probs=108.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|+||||||||+|+|++.....            ++..|++|    ++..              .+.+.    
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------v~~~~gtT----~d~~--------------~~~i~----  224 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDPV--------------DDEVF----  224 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC----------C--------------CEEEE----
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccc------------cCCCCCCc----CCce--------------EEEEE----
Confidence            46899999999999999999999986431            34445444    2211              11111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-----c-hHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-----A-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-----~-~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                     ..+.++.+|||||+.......     . ........+  ..+|++++|+|+..+....+     .
T Consensus       225 ---------------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--~~ad~vllv~d~~~~~~~~~-----~  282 (439)
T 1mky_A          225 ---------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQD-----Q  282 (439)
T ss_dssp             ---------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHH-----H
T ss_pred             ---------------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH--hhCCEEEEEEeCCCCCCHHH-----H
Confidence                           133578999999986532110     0 000111122  33699999999988765443     2


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      .+...+...++|+|+|+||+|+.....  ..++...+.                 +.+     .+..+.+++++||++|.
T Consensus       283 ~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~SA~~g~  340 (439)
T 1mky_A          283 RMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR-----------------EKL-----YFIDYSPLIFTSADKGW  340 (439)
T ss_dssp             HHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHH-----------------HHC-----GGGTTSCEEECBTTTTB
T ss_pred             HHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHH-----------------HHh-----ccCCCCcEEEEECCCCC
Confidence            234445667899999999999986542  222221111                 111     12345789999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhh
Q 014354          300 GIEAYFKAVEESAQEFMETYKA  321 (426)
Q Consensus       300 gv~~l~~~l~~~~~~~~~~~~~  321 (426)
                      |+.++++.+.+.+......++.
T Consensus       341 gv~~l~~~i~~~~~~~~~~i~t  362 (439)
T 1mky_A          341 NIDRMIDAMNLAYASYTTKVPS  362 (439)
T ss_dssp             SHHHHHHHHHHHHHHHTCCCCH
T ss_pred             CHHHHHHHHHHHHHhhcccCCH
Confidence            9999999999887766544443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.73  E-value=1.4e-17  Score=148.66  Aligned_cols=167  Identities=13%  Similarity=0.096  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+|+|++......              ...+.......                 .+..  
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~--   61 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD--------------YDPTIEDSYLK-----------------HTEI--   61 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEEEE-----------------EEEE--
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCccceeEE-----------------EEEe--
Confidence            44568999999999999999999997754321              11111000000                 0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++..   ...   ..+  ..+|++++|+|+....+......-...+..
T Consensus        62 ----------------~~~~~~l~i~Dt~G~~~~~~---~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  117 (183)
T 3kkq_A           62 ----------------DNQWAILDVLDTAGQEEFSA---MRE---QYM--RTGDGFLIVYSVTDKASFEHVDRFHQLILR  117 (183)
T ss_dssp             ----------------TTEEEEEEEEECCSCGGGCS---SHH---HHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ----------------CCcEEEEEEEECCCchhhHH---HHH---HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence                            01224567899999877521   111   112  236999999999764221111100011122


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEAY  304 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~l  304 (426)
                      .....++|+|+|+||+|+.......  ......+.                      ..+ ..+++++||+ +|.|++++
T Consensus       118 ~~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A          118 VKDRESFPMILVANKVDLMHLRKVT--RDQGKEMA----------------------TKY-NIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             HHTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHH----------------------HHH-TCCEEEEBCSSSCBSHHHH
T ss_pred             hcCCCCCcEEEEEECCCchhccCcC--HHHHHHHH----------------------HHh-CCeEEEeccCCCCCCHHHH
Confidence            2234678999999999997643211  01111111                      111 2679999999 99999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|.+.+.+
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.73  E-value=1.9e-18  Score=157.52  Aligned_cols=167  Identities=20%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ...+..+|+|+|.+|||||||+|+|++..+....              +.+.......                  ....
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~------------------~~~~   67 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTYSK------------------IVTL   67 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEEEE------------------EEC-
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEEEE------------------EEEE
Confidence            3456789999999999999999999987654211              1111000000                  0000


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                       ......+.||||||+.++......        ....+|++++|+|+........    ...++
T Consensus        68 -----------------~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~----~~~~~  118 (201)
T 3oes_A           68 -----------------GKDEFHLHLVDTAGQDEYSILPYS--------FIIGVHGYVLVYSVTSLHSFQV----IESLY  118 (201)
T ss_dssp             --------------------CEEEEEEEECCCCTTCCCCGG--------GTTTCCEEEEEEETTCHHHHHH----HHHHH
T ss_pred             -----------------CCEEEEEEEEECCCccchHHHHHH--------HHhcCCEEEEEEeCCCHHHHHH----HHHHH
Confidence                             023467899999998775211100        0134799999999975322111    11222


Q ss_pred             HHHh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       225 ~~l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ..+.    ..++|+|||+||+|+.........  ....+.                      .. ...+++++||++|.|
T Consensus       119 ~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~~----------------------~~-~~~~~~~~Sa~~~~~  173 (201)
T 3oes_A          119 QKLHEGHGKTRVPVVLVGNKADLSPEREVQAV--EGKKLA----------------------ES-WGATFMESSARENQL  173 (201)
T ss_dssp             HHHHC-----CCCEEEEEECTTCGGGCCSCHH--HHHHHH----------------------HH-HTCEEEECCTTCHHH
T ss_pred             HHHHHhcCCCCCCEEEEEECccCccccccCHH--HHHHHH----------------------HH-hCCeEEEEeCCCCCC
Confidence            2222    247899999999998754321100  011110                      01 125799999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 014354          301 IEAYFKAVEESAQEFME  317 (426)
Q Consensus       301 v~~l~~~l~~~~~~~~~  317 (426)
                      +.+++.+|.+.+.....
T Consensus       174 v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          174 TQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999988776543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.73  E-value=1.5e-17  Score=145.43  Aligned_cols=157  Identities=18%  Similarity=0.217  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.+|||||||+++|++..+..              ..| +..+.                      .....    
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~--------------~~~-t~~~~----------------------~~~~~----   40 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVT--------------TIP-TIGFN----------------------VETVE----   40 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSC--------------CCC-CSSCC----------------------EEEEE----
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCc--------------ccC-cCcee----------------------EEEEE----
Confidence            68999999999999999999876431              111 11000                      00000    


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--  228 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--  228 (426)
                                  ..+..+.||||||+.++.       .+...+ ...+|++++|+|+....+   +......+...+.  
T Consensus        41 ------------~~~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~   97 (164)
T 1r8s_A           41 ------------YKNISFTVWDVGGQDKIR-------PLWRHY-FQNTQGLIFVVDSNDRER---VNEAREELMRMLAED   97 (164)
T ss_dssp             ------------CSSCEEEEEECCCCGGGH-------HHHHHH-TTTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCG
T ss_pred             ------------ECCEEEEEEEcCCChhhH-------HHHHHH-hccCCEEEEEEECCCHHH---HHHHHHHHHHHHhch
Confidence                        134789999999997641       121111 145799999999976422   2111111112222  


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..+.|+++|+||+|+........+...+                     +..... ....+++++||++|.|+.+++++
T Consensus        98 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           98 ELRDAVLLVFANKQDLPNAMNAAEITDKL---------------------GLHSLR-HRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             GGTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGGCS-SCCEEEEECBTTTTBTHHHHHHH
T ss_pred             hhcCCeEEEEEECcCCcCCCCHHHHHHHh---------------------Cccccc-CccEEEEEcccCCCcCHHHHHHH
Confidence             2378999999999997653222221111                     100000 01246999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       156 l~~~i~  161 (164)
T 1r8s_A          156 LSNQLR  161 (164)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            987654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=4.4e-17  Score=165.11  Aligned_cols=116  Identities=21%  Similarity=0.258  Sum_probs=78.6

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV  243 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiDl  243 (426)
                      ..+.||||||+.++.      ..+...+  ..+|++|+|+|+..+. ..++     ...+..+...+ .|+|+|+||+|+
T Consensus        75 ~~~~iiDtPGh~~~~------~~~~~~~--~~~D~~ilVvda~~~~~~~qt-----~~~~~~~~~~~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGHEVLM------ATMLSGA--ALMDGAILVVAANEPFPQPQT-----REHFVALGIIGVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCCGGGH------HHHHHHH--TTCSEEEEEEETTSCSSCHHH-----HHHHHHHHHHTCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcHHHH------HHHHHHH--hhCCEEEEEEECCCCCCcHHH-----HHHHHHHHHcCCCCEEEEEECccc
Confidence            578999999987752      2222222  4589999999999876 3333     12223334444 489999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ..........+.+..+...                    .+....+++++||++|.|+.+|+++|...++.
T Consensus       142 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          142 VSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cchHHHHHHHHHHHHHHHh--------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            9876544444444322111                    12345789999999999999999999886643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.73  E-value=9.9e-18  Score=152.35  Aligned_cols=166  Identities=15%  Similarity=0.190  Sum_probs=97.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|.+|||||||+|+|++..+...              .+.++......                 .+..   
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~---   57 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRK-----------------KVVL---   57 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCTTCCEEEEE-----------------EEEE---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCccceEEEE-----------------EEEE---
Confidence            3567999999999999999999998764321              11111000000                 0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~  225 (426)
                        .             ...+.+.||||||+.++.      ......+  ..+|++++|+|+....+... ....+ .+..
T Consensus        58 --~-------------~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~  113 (206)
T 2bov_A           58 --D-------------GEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAA-TADFREQILR  113 (206)
T ss_dssp             --T-------------TEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHH
T ss_pred             --C-------------CEEEEEEEEcCCChhhhH------HHHHHHH--hhCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence              0             123578999999987752      1111222  23689999999875322111 10101 1111


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....++|++||+||+|+.......  ......+..                     . + ..+++++||++|.|+.+++
T Consensus       114 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A          114 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q-W-NVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             HTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEEECTTTCTTHHHHH
T ss_pred             hcCCCCCCEEEEEeccCcccccccc--HHHHHHHHH---------------------H-h-CCeEEEEeCCCCCCHHHHH
Confidence            1112479999999999997643210  011111110                     1 1 2579999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      .+|.+.+.+.
T Consensus       169 ~~l~~~i~~~  178 (206)
T 2bov_A          169 FDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999887664

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.73  E-value=7.9e-18  Score=150.86  Aligned_cols=163  Identities=16%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|++|||||||+|+|++.. ....       .|       +....                      .....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~-------~~-------t~~~~----------------------~~~~~   58 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI-------SP-------TLGFN----------------------IKTLE   58 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC-------CC-------CSSEE----------------------EEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc-------cc-------cCccc----------------------eEEEE
Confidence            467899999999999999999999865 2110       01       11000                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.||||||+.++...       ... ....+|++++|+|+....+...   ........
T Consensus        59 ----------------~~~~~~~~~Dt~G~~~~~~~-------~~~-~~~~~d~ii~v~d~~~~~s~~~---~~~~~~~~  111 (186)
T 1ksh_A           59 ----------------HRGFKLNIWDVGGQKSLRSY-------WRN-YFESTDGLIWVVDSADRQRMQD---CQRELQSL  111 (186)
T ss_dssp             ----------------ETTEEEEEEEECCSHHHHTT-------GGG-GCTTCSEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHHH-------HHH-HhcCCCEEEEEEECcCHHHHHH---HHHHHHHH
Confidence                            12468899999999664210       000 1134799999999976432211   11111222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|+++|+||+|+.......++.+.+.                     ... ......+++++||++|.|+.+
T Consensus       112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~  169 (186)
T 1ksh_A          112 LVEERLAGATLLIFANKQDLPGALSCNAIQEALE---------------------LDS-IRSHHWRIQGCSAVTGEDLLP  169 (186)
T ss_dssp             HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred             HhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC---------------------hhh-ccCCceEEEEeeCCCCCCHHH
Confidence            22   25799999999999987533222211110                     000 001235799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+.+.
T Consensus       170 l~~~l~~~i~~~  181 (186)
T 1ksh_A          170 GIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999887653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.73  E-value=7.7e-18  Score=152.99  Aligned_cols=178  Identities=13%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+++|++..+...              .+.++.....                  ..+.  
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~------------------~~~~--   62 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE--------------YIPTAFDNFS------------------AVVS--   62 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC----------------------CCSSEEEE------------------EEEE--
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCcccceeE------------------EEEE--
Confidence            45678999999999999999999998753321              1111100000                  0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                         .            ....+.+.||||||+.++.....       . ....+|++++|+|+........   ....++.
T Consensus        63 ---~------------~~~~~~~~i~Dt~G~~~~~~~~~-------~-~~~~~~~~i~v~d~~~~~s~~~---~~~~~~~  116 (201)
T 2q3h_A           63 ---V------------DGRPVRLQLCDTAGQDEFDKLRP-------L-CYTNTDIFLLCFSVVSPSSFQN---VSEKWVP  116 (201)
T ss_dssp             ---E------------TTEEEEEEEEECCCSTTCSSSGG-------G-GGTTCSEEEEEEETTCHHHHHH---HHHTHHH
T ss_pred             ---E------------CCEEEEEEEEECCCCHHHHHHhH-------h-hcCCCcEEEEEEECCCHHHHHH---HHHHHHH
Confidence               0            01225678999999977532111       0 1134799999999975332211   1001222


Q ss_pred             HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+..  .++|++||+||+|+...........      ..   ..   ..+....+..+...++..+++++||++|.|+.+
T Consensus       117 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~------~~---~~---~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  184 (201)
T 2q3h_A          117 EIRCHCPKAPIILVGTQSDLREDVKVLIELD------KC---KE---KPVPEEAAKLLAEEIKAASYIECSALTQKNLKE  184 (201)
T ss_dssp             HHHHHCSSSCEEEEEECGGGGGCHHHHHHHH------TT---TC---CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHH
T ss_pred             HHHHhCCCCCEEEEEECHhhhhchhhhhhhc------cc---cc---ccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHH
Confidence            2222  3899999999999976432111100      00   00   000000011111223334799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+.+.
T Consensus       185 l~~~l~~~~~~~  196 (201)
T 2q3h_A          185 VFDAAIVAGIQY  196 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999887654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.73  E-value=2e-18  Score=153.92  Aligned_cols=167  Identities=16%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||+|+|++..+..              ..+.++.....                  ..+.    
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~------------------~~~~----   48 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--------------SYDPTIENTFT------------------KLIT----   48 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCS--------------CCCTTCCEEEE------------------EEEE----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCCccccEE------------------EEEE----
Confidence            45789999999999999999999765332              11111100000                  0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .            ....+.+.||||||+.++......        ....+|++++|+|+...........-...+...+
T Consensus        49 -~------------~~~~~~~~l~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (181)
T 3t5g_A           49 -V------------NGQEYHLQLVDTAGQDEYSIFPQT--------YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV  107 (181)
T ss_dssp             -E------------TTEEEEEEEEECCCCCTTCCCCGG--------GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             -E------------CCEEEEEEEEeCCCchhhhHHHHH--------HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence             0            012357899999999775211110        0134799999999975322111110001112222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|++||+||+|+.......  ......+.                      .. ...+++++||++|.|+.+++.+
T Consensus       108 ~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A          108 GKVQIPIMLVGNKKDLHMERVIS--YEEGKALA----------------------ES-WNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             ----CCEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HH-TTCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECccchhcceec--HHHHHHHH----------------------HH-hCCcEEEEecCCCCCHHHHHHH
Confidence            24578999999999997543211  01111111                      11 1357999999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          308 VEESAQEFM  316 (426)
Q Consensus       308 l~~~~~~~~  316 (426)
                      |.+.+....
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            998876544

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=1.4e-17  Score=152.47  Aligned_cols=176  Identities=14%  Similarity=0.141  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .....+|+|+|.+|||||||+|+|++..+.....       |       ++......                 .+..  
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~-------t~~~~~~~-----------------~~~~--   68 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYV-------P-------TVFENYVA-----------------DIEV--   68 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEEE-----------------EEEE--
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCC-------C-------cccceEEE-----------------EEEE--
Confidence            3445789999999999999999999876542111       0       10000000                 0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++......        ....+|++++|+|+.....   +......+..
T Consensus        69 ----------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~  121 (207)
T 2fv8_A           69 ----------------DGKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSVDSPDS---LENIPEKWVP  121 (207)
T ss_dssp             ----------------TTEEEEEEEEECTTCTTCTTTGGG--------GCTTCCEEEEEEETTCHHH---HHHHHHTHHH
T ss_pred             ----------------CCEEEEEEEEECCCcHHHHHHHHh--------hcCCCCEEEEEEECCCHHH---HHHHHHHHHH
Confidence                            012357899999999775211110        1134799999999865321   1111011222


Q ss_pred             HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+..  .++|+|+|+||+|+.......+....+.       ..     .+....+..+...+...+++++||++|.|+++
T Consensus       122 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~e  189 (207)
T 2fv8_A          122 EVKHFCPNVPIILVANKKDLRSDEHVRTELARMK-------QE-----PVRTDDGRAMAVRIQAYDYLECSAKTKEGVRE  189 (207)
T ss_dssp             HHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHH
T ss_pred             HHHHhCCCCCEEEEEEchhhhccccchhhhhhcc-------cC-----CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHH
Confidence            2332  3799999999999986543222211110       00     00011111111122334799999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          304 YFKAVEESAQ  313 (426)
Q Consensus       304 l~~~l~~~~~  313 (426)
                      ++++|.+.+.
T Consensus       190 l~~~l~~~i~  199 (207)
T 2fv8_A          190 VFETATRAAL  199 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.73  E-value=1e-17  Score=152.70  Aligned_cols=169  Identities=16%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+++|++|||||||+++|++..+..        ..|.+.    .                      +.+.+.   
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--------~~~t~~----~----------------------~~~~~~---   65 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ--------HVPTLH----P----------------------TSEELT---   65 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCC----C----------------------SCEEEE---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc--------cCCCCC----c----------------------eeEEEE---
Confidence            355789999999999999999998765321        001110    0                      001011   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+.++.+|||||+.++.....      ..+  ..+|++++|+|+....+   +..........
T Consensus        66 ----------------~~~~~l~i~Dt~G~~~~~~~~~------~~~--~~~d~~i~v~D~~~~~s---~~~~~~~~~~~  118 (198)
T 1f6b_A           66 ----------------IAGMTFTTFDLGGHIQARRVWK------NYL--PAINGIVFLVDCADHER---LLESKEELDSL  118 (198)
T ss_dssp             ----------------ETTEEEEEEEECC----CCGGG------GGG--GGCSEEEEEEETTCGGG---HHHHHHHHHHH
T ss_pred             ----------------ECCEEEEEEECCCcHhhHHHHH------HHH--hcCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence                            1336889999999876521100      011  24799999999975432   21111111222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhh--hHhhhhcCCceEEeecccCCCH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSL--ALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +.   ..++|+++|+||+|+.......+..+.+.    ...        .....+.  +........+++++||++|.|+
T Consensus       119 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  186 (198)
T 1f6b_A          119 MTDETIANVPILILGNKIDRPEAISEERLREMFG----LYG--------QTTGKGSVSLKELNARPLEVFMCSVLKRQGY  186 (198)
T ss_dssp             HTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT----CTT--------TCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred             HhCcccCCCcEEEEEECCCccccCCHHHHHHHhC----ccc--------ccccccccccccccCceEEEEEEECCCCCCH
Confidence            22   25799999999999976321111211110    000        0000000  0000112357999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          302 EAYFKAVEES  311 (426)
Q Consensus       302 ~~l~~~l~~~  311 (426)
                      ++++++|.+.
T Consensus       187 ~~l~~~l~~~  196 (198)
T 1f6b_A          187 GEGFRWMAQY  196 (198)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=3.8e-18  Score=153.62  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++..+.....       |..     +......                  .+..    
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~----   59 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA-------ATI-----GVDFKVK------------------TISV----   59 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCC-----SEEEEEE------------------EEEE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCC-------Ccc-----ceEEEEE------------------EEEE----
Confidence            45789999999999999999999876432110       000     0000000                  0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++..   .   ....+  ..+|++|+|+|+........    ...++..+
T Consensus        60 --------------~~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~~~~i  113 (195)
T 1x3s_A           60 --------------DGNKAKLAIWDTAGQERFRT---L---TPSYY--RGAQGVILVYDVTRRDTFVK----LDNWLNEL  113 (195)
T ss_dssp             --------------TTEEEEEEEEEECSSGGGCC---S---HHHHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred             --------------CCeEEEEEEEeCCCchhhhh---h---hHHHh--ccCCEEEEEEECcCHHHHHH----HHHHHHHH
Confidence                          01236789999999876521   1   11112  35799999999975422111    11222223


Q ss_pred             hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..    .++|++||+||+|+.........   ...+..                     .  ...+++++||++|.|+.+
T Consensus       114 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A          114 ETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFAR---------------------K--HSMLFIEASAKTCDGVQC  167 (195)
T ss_dssp             TTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHH---------------------H--TTCEEEECCTTTCTTHHH
T ss_pred             HHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHH---------------------H--cCCEEEEecCCCCCCHHH
Confidence            32    46899999999999543211111   111100                     1  135799999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 014354          304 YFKAVEESAQEFMETYKA  321 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~  321 (426)
                      ++++|.+.+...++.++.
T Consensus       168 l~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          168 AFEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHHhhhhhhcc
Confidence            999999988876665554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.73  E-value=8.8e-18  Score=149.82  Aligned_cols=162  Identities=22%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|++|||||||+++|++..+..        ..|.+.       +.                      .....
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-------~~----------------------~~~~~   58 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVT--------TKPTIG-------FN----------------------VETLS   58 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEE--------ECSSTT-------CC----------------------EEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCc--------cCCcCc-------cc----------------------eEEEE
Confidence            467899999999999999999999765311        011110       00                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.+|||||+.++.....      ..  ...+|++++|+|+....+.....   ......
T Consensus        59 ----------------~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~  111 (183)
T 1moz_A           59 ----------------YKNLKLNVWDLGGQTSIRPYWR------CY--YADTAAVIFVVDSTDKDRMSTAS---KELHLM  111 (183)
T ss_dssp             ----------------ETTEEEEEEEEC----CCTTGG------GT--TTTEEEEEEEEETTCTTTHHHHH---HHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHHHHH------HH--hccCCEEEEEEECCCHHHHHHHH---HHHHHH
Confidence                            1236889999999976521110      01  13479999999997653322211   111122


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..+.|+++|+||+|+.......++.+.+.                     ... ......+++++||++|.|+.+
T Consensus       112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~  169 (183)
T 1moz_A          112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN---------------------LVE-LKDRSWSIVASSAIKGEGITE  169 (183)
T ss_dssp             TTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT---------------------TTT-CCSSCEEEEEEBGGGTBTHHH
T ss_pred             HcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------ccc-ccCCceEEEEccCCCCcCHHH
Confidence            22   35789999999999976432222211110                     000 001224799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|.+.+.+
T Consensus       170 l~~~l~~~~~~  180 (183)
T 1moz_A          170 GLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.73  E-value=5.2e-18  Score=152.23  Aligned_cols=162  Identities=20%  Similarity=0.287  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|++|||||||+++|++..+..        ..|...       +.                      .....
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~--------~~~t~g-------~~----------------------~~~~~   56 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH--------ITPTQG-------FN----------------------IKSVQ   56 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE--------EEEETT-------EE----------------------EEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc--------ccCcCC-------eE----------------------EEEEE
Confidence            356899999999999999999999874321        001000       00                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.+|||||+..+.      ......+  ..+|++++|+|+....+   +..........
T Consensus        57 ----------------~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~s---~~~~~~~~~~~  109 (181)
T 1fzq_A           57 ----------------SQGFKLNVWDIGGQRKIR------PYWRSYF--ENTDILIYVIDSADRKR---FEETGQELTEL  109 (181)
T ss_dssp             ----------------ETTEEEEEEECSSCGGGH------HHHHHHH--TTCSEEEEEEETTCGGG---HHHHHHHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHHHH------HHHHHHh--CCCCEEEEEEECcCHHH---HHHHHHHHHHH
Confidence                            123678999999997651      1111222  35799999999875432   11111111122


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|+++|+||+|+.......++.+.+                     +... ......+++++||++|.|+.+
T Consensus       110 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~Sa~~g~gi~~  167 (181)
T 1fzq_A          110 LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL---------------------NLHT-IRDRVWQIQSCSALTGEGVQD  167 (181)
T ss_dssp             TTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred             HhChhhcCCCEEEEEECcCcccCCCHHHHHHHh---------------------Cchh-ccCCceEEEEccCCCCCCHHH
Confidence            22   2578999999999998653222221111                     0000 001234799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|.+.+.+
T Consensus       168 l~~~l~~~~~~  178 (181)
T 1fzq_A          168 GMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHHh
Confidence            99999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.73  E-value=1.1e-17  Score=146.23  Aligned_cols=163  Identities=15%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+++|.+|||||||+|+|++..+...              .+.++.......                 +..    
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~----   47 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED--------------YEPTKADSYRKK-----------------VVL----   47 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEEEEE-----------------EEE----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCC--------------CCCCcceEEEEE-----------------EEE----
Confidence            347899999999999999999998764321              111110000000                 000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~  226 (426)
                                    ......+.||||||+.++.      ......+  ..+|++++|+|+......... ...+ .+...
T Consensus        48 --------------~~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~  104 (168)
T 1u8z_A           48 --------------DGEEVQIDILDTAGQEDYA------AIRDNYF--RSGEGFLCVFSITEMESFAAT-ADFREQILRV  104 (168)
T ss_dssp             --------------TTEEEEEEEEECCC---CH------HHHHHHH--HHCSEEEEEEETTCHHHHHHH-HHHHHHHHHH
T ss_pred             --------------CCEEEEEEEEECCCcchhH------HHHHHHh--hcCCEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence                          0123578999999987652      1111222  236899999999753221111 1101 11111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.++++
T Consensus       105 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~  159 (168)
T 1u8z_A          105 KEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVFF  159 (168)
T ss_dssp             HCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHHH
T ss_pred             cCCCCCcEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHHH
Confidence            112478999999999987543210  011111100                     1  125799999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (168)
T 1u8z_A          160 DLMREIR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=1.1e-17  Score=148.63  Aligned_cols=168  Identities=19%  Similarity=0.232  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+...            ...+ +..++...                 ..+..  
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~-t~~~~~~~-----------------~~~~~--   55 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG------------TFIS-TVGIDFRN-----------------KVLDV--   55 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC------------CCCC-CCSCEEEE-----------------EEEEE--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCC------------CcCC-ceeeEEEE-----------------EEEEE--
Confidence            3557899999999999999999998765321            0001 11110000                 00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .             .....+.||||||+.++..      .....+  ..+|++++|+|+....+... ....+..+..
T Consensus        56 --~-------------~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~  111 (180)
T 2g6b_A           56 --D-------------GVKVKLQMWDTAGQERFRS------VTHAYY--RDAHALLLLYDVTNKASFDN-IQAWLTEIHE  111 (180)
T ss_dssp             --T-------------TEEEEEEEEECCCC--------------CCG--GGCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred             --C-------------CEEEEEEEEeCCCcHHHHH------HHHHHc--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence              0             1235789999999866421      111111  34799999999976432111 1111111111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|++||+||+|+.......  ......+..                      .+ ..+++++||++|.|+.++++
T Consensus       112 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A          112 YAQHDVALMLLGNKVDSAHERVVK--REDGEKLAK----------------------EY-GLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             HSCTTCEEEEEEECCSTTSCCCSC--HHHHHHHHH----------------------HH-TCCEEECCTTTCTTHHHHHH
T ss_pred             hCCCCCcEEEEEECcccCcccccC--HHHHHHHHH----------------------Hc-CCeEEEEeCCCCCCHHHHHH
Confidence            223578999999999998643211  001111110                      11 25799999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.+.+...
T Consensus       167 ~l~~~~~~~  175 (180)
T 2g6b_A          167 AIAKELKRR  175 (180)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            998877543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.72  E-value=1.1e-17  Score=151.51  Aligned_cols=165  Identities=17%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+++|++|||||||+++|++..+..        ..|....    .                      .+.+.   
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~--------~~~t~~~----~----------------------~~~~~---   63 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT--------LQPTWHP----T----------------------SEELA---   63 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC--------CCCCCSC----E----------------------EEEEE---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc--------cccCCCC----C----------------------eEEEE---
Confidence            345689999999999999999999875431        0011100    0                      00000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.+|||||+.++.....      ..+  ..+|++++|+|+....+...   ........
T Consensus        64 ----------------~~~~~~~i~Dt~G~~~~~~~~~------~~~--~~~d~~i~v~d~~~~~s~~~---~~~~~~~~  116 (190)
T 1m2o_B           64 ----------------IGNIKFTTFDLGGHIQARRLWK------DYF--PEVNGIVFLVDAADPERFDE---ARVELDAL  116 (190)
T ss_dssp             ----------------ETTEEEEEEECCCSGGGTTSGG------GGC--TTCCEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHHHHHHHH------HHH--hcCCEEEEEEECCChHHHHH---HHHHHHHH
Confidence                            1236889999999977521100      011  34799999999976432211   11111122


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|+++|+||+|+.......++.+.+.    .   ....      ..+. + ......+++++||++|.|+.+
T Consensus       117 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~---~~~~------~~~~-~-~~~~~~~~~~~Sa~~g~gi~~  181 (190)
T 1m2o_B          117 FNIAELKDVPFVILGNKIDAPNAVSEAELRSALG----L---LNTT------GSQR-I-EGQRPVEVFMCSVVMRNGYLE  181 (190)
T ss_dssp             HTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT----C---SSCC------C----C-CSSCCEEEEECBTTTTBSHHH
T ss_pred             HcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC----C---cccc------cccc-c-cccceEEEEEeECCcCCCHHH
Confidence            21   35799999999999976321111211110    0   0000      0000 0 011345799999999999999


Q ss_pred             HHHHHHH
Q 014354          304 YFKAVEE  310 (426)
Q Consensus       304 l~~~l~~  310 (426)
                      ++++|.+
T Consensus       182 l~~~l~~  188 (190)
T 1m2o_B          182 AFQWLSQ  188 (190)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=1.3e-17  Score=150.61  Aligned_cols=174  Identities=14%  Similarity=0.099  Sum_probs=97.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+...              ...+.......                 .+..    
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~----   61 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEE--------------YVPTVFDHYAV-----------------SVTV----   61 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCS--------------CCCSSCCCEEE-----------------EEES----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEE-----------------EEEE----
Confidence            457999999999999999999998754321              11111000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++.....       . ....+|++++|+|+....+   +......++..+
T Consensus        62 --------------~~~~~~~~i~D~~G~~~~~~~~~-------~-~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~  116 (194)
T 2atx_A           62 --------------GGKQYLLGLYDTAGQEDYDRLRP-------L-SYPMTDVFLICFSVVNPAS---FQNVKEEWVPEL  116 (194)
T ss_dssp             --------------SSCEEEEEEECCCCSSSSTTTGG-------G-GCTTCSEEEEEEETTCHHH---HHHHHHTHHHHH
T ss_pred             --------------CCEEEEEEEEECCCCcchhHHHH-------H-hcCCCCEEEEEEECCCHHH---HHHHHHHHHHHH
Confidence                          01235788999999977521110       0 1134799999999865322   111110122223


Q ss_pred             hhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 YKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ...  ++|++||+||+|+.............       ..     ..+....+..+...++..+++++||++|.|+.+++
T Consensus       117 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-------~~-----~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  184 (194)
T 2atx_A          117 KEYAPNVPFLLIGTQIDLRDDPKTLARLNDM-------KE-----KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF  184 (194)
T ss_dssp             HHHSTTCCEEEEEECTTSTTCHHHHHHHTTT-------TC-----CCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred             HHhCCCCCEEEEEEChhhcccccchhhcccc-------cC-----cccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence            332  79999999999998754221111000       00     00000001111111233479999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+.
T Consensus       185 ~~l~~~i~  192 (194)
T 2atx_A          185 DEAIIAIL  192 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.72  E-value=2.9e-17  Score=144.14  Aligned_cols=163  Identities=17%  Similarity=0.204  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+|+|++..+.....       |...     .....                   ..+..    
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~-----~~~~~-------------------~~~~~----   47 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI-------TTIG-----IDFKI-------------------KTVDI----   47 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------CCEEE-------------------EEEES----
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC-------Cccc-----eeEEE-------------------EEEEE----
Confidence            4689999999999999999999876432110       0000     00000                   00000    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .             .....+.||||||+.++...  .    ...+  ..+|++++|+|+....+... ....+..+....
T Consensus        48 ~-------------~~~~~~~l~D~~G~~~~~~~--~----~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~  105 (170)
T 1g16_A           48 N-------------GKKVKLQIWDTAGQERFRTI--T----TAYY--RGAMGIILVYDITDERTFTN-IKQWFKTVNEHA  105 (170)
T ss_dssp             S-------------SCEEEEEEECCTTGGGTSCC--C----HHHH--TTEEEEEEEEETTCHHHHHT-HHHHHHHHHHHS
T ss_pred             C-------------CEEEEEEEEeCCCChhhhhh--H----HHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence            0             12357899999998765211  1    1111  34699999999875332111 111111111112


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+.......+..   ..+..                     . + ..+++++||++|.|+.+++.+|
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~-~-~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A          106 NDEAQLLLVGNKSDMETRVVTADQG---EALAK---------------------E-L-GIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             CTTCEEEEEEECTTCTTCCSCHHHH---HHHHH---------------------H-H-TCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCcEEEEEECccCCcCccCHHHH---HHHHH---------------------H-c-CCeEEEEECCCCCCHHHHHHHH
Confidence            2478999999999995432111111   11110                     1 1 2579999999999999999999


Q ss_pred             HHHHHH
Q 014354          309 EESAQE  314 (426)
Q Consensus       309 ~~~~~~  314 (426)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (170)
T 1g16_A          160 AKLIQE  165 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.72  E-value=7.9e-17  Score=144.88  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchh--hhhhHHHHHHHH--hhccCCeEEEEec
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSIL--YKTRLPLVLAFNK  240 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~--~~~~~l~~~~~l--~~~~~P~IlVlNK  240 (426)
                      ...+.||||||+.++.       .+...+ ...+|++|+|+|+........  .+.....++..+  ...++|+|||+||
T Consensus        73 ~~~~~i~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK  144 (198)
T 3t1o_A           73 KTRFHLYTVPGQVFYN-------ASRKLI-LRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK  144 (198)
T ss_dssp             EEEEEEEECCSCCSCS-------HHHHHH-TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred             ceEEEEEeCCChHHHH-------HHHHHH-HhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence            3578999999997752       111111 145799999999974322211  111111122212  1257899999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      +|+.......+..+..                          ..++..+++++||++|.|+.+++++|.+.+...
T Consensus       145 ~Dl~~~~~~~~~~~~~--------------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          145 RDLPDALPVEMVRAVV--------------------------DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             TTSTTCCCHHHHHHHH--------------------------CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             hhcccccCHHHHHHHH--------------------------HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            9997652211111111                          112323899999999999999999999877654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.72  E-value=3.3e-17  Score=145.39  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|++|||||||+++|++..+.....       |.........                        .+..  
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~------------------------~~~~--   52 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK-------ATIGADFLTK------------------------EVTV--   52 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------CCCSCEEE------------------------EECC--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccC-------CccceEEEEE------------------------EEEE--
Confidence            356789999999999999999999876442211       0000000000                        0000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .            ......+.||||||+..+.       .+... ....+|++++|+|+......... ...+..+..
T Consensus        53 --~------------~~~~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~  109 (182)
T 1ky3_A           53 --D------------GDKVATMQVWDTAGQERFQ-------SLGVA-FYRGADCCVLVYDVTNASSFENI-KSWRDEFLV  109 (182)
T ss_dssp             --S------------SSCCEEEEEECCC-----------------C-CSTTCCEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred             --c------------CCcEEEEEEEECCCChHhh-------hhhHH-HhhcCCEEEEEEECCChHHHHHH-HHHHHHHHH
Confidence              0            0123578999999986642       11110 11347999999999764321111 011111111


Q ss_pred             Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ..    ..++|+++|+||+|+....... .......+.                      ......+++++||++|.|+.
T Consensus       110 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~  166 (182)
T 1ky3_A          110 HANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELA----------------------KSLGDIPLFLTSAKNAINVD  166 (182)
T ss_dssp             HHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHH----------------------HHTTSCCEEEEBTTTTBSHH
T ss_pred             HhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHH----------------------HhcCCCeEEEEecCCCCCHH
Confidence            11    1578999999999996543110 001111111                      11235679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (182)
T 1ky3_A          167 TAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998877543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=1.1e-16  Score=159.72  Aligned_cols=169  Identities=18%  Similarity=0.293  Sum_probs=103.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+++|++|||||||+|+|++....             +...++++.    ...              -+.+.   
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------~~~~~~~t~----~~~--------------~~~~~---  210 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------IASYPFTTR----GIN--------------VGQFE---  210 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------EECCTTCSS----CEE--------------EEEEE---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCeee----cee--------------EEEEE---
Confidence            45679999999999999999999987521             222333320    000              00000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchH--HHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG--AIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLY  222 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~--~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~  222 (426)
                                      ..+..+.+|||||+.++..+....  ...... ....+|++++|+|+....  +....    ..
T Consensus       211 ----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ad~illV~D~s~~~~~~~~~~----~~  269 (357)
T 2e87_A          211 ----------------DGYFRYQIIDTPGLLDRPISERNEIEKQAILA-LRYLGNLIIYIFDPSEHCGFPLEEQ----IH  269 (357)
T ss_dssp             ----------------ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-GGGTCSEEEEEECTTCTTSSCHHHH----HH
T ss_pred             ----------------ecCceEEEEeCCCccccchhhhhHHHHHHHHH-HHhcCCEEEEEEeCCccccCCHHHH----HH
Confidence                            123578999999997753222111  111111 123589999999987644  22211    11


Q ss_pred             HHHHHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          223 ACSILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       223 ~~~~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ++..+..  .++|+|+|+||+|+............+.                           ....+++++||++|+|
T Consensus       270 ~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---------------------------~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          270 LFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK---------------------------EKGLNPIKISALKGTG  322 (357)
T ss_dssp             HHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH---------------------------HTTCCCEECBTTTTBT
T ss_pred             HHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH---------------------------hcCCCeEEEeCCCCcC
Confidence            1222221  2799999999999988654322211110                           1236799999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 014354          301 IEAYFKAVEESAQEFME  317 (426)
Q Consensus       301 v~~l~~~l~~~~~~~~~  317 (426)
                      +++++++|.+.+.....
T Consensus       323 i~~l~~~i~~~l~~~~~  339 (357)
T 2e87_A          323 IDLVKEEIIKTLRPLAE  339 (357)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998866433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.72  E-value=1.2e-17  Score=145.35  Aligned_cols=157  Identities=18%  Similarity=0.215  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||+|+|++......              .+.+........                 +..      
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~~~~~~~~~~-----------------~~~------   46 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDE--------------CDPTIEDSYRKQ-----------------VVI------   46 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccc--------------cCCccceEEEEE-----------------EEE------
Confidence            5799999999999999999998754321              011110000000                 000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ....+.+.||||||+.++..      .....+  ..+|++++|+|+........    ...+...+. 
T Consensus        47 ------------~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~----~~~~~~~i~~  102 (166)
T 2ce2_X           47 ------------DGETCLLDILDTAGQEEYSA------MRDQYM--RTGEGFLCVFAINNTKSFED----IHQYREQIKR  102 (166)
T ss_dssp             ------------TTEEEEEEEEECCCCSSCCH------HHHHHH--HHCSEEEEEEETTCHHHHHH----HHHHHHHHHH
T ss_pred             ------------CCEEEEEEEEECCCchhhhH------HHHHhh--ccCCEEEEEEECCCHHHHHH----HHHHHHHHHH
Confidence                        01235789999999876521      111122  23689999999864321111    111122222 


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ..++|+++|+||+|+............+   ..                     . + ..+++++||++|.|+.+++
T Consensus       103 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~---~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X          103 VKDSDDVPMVLVGNKSDLAARTVESRQAQDL---AR---------------------S-Y-GIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             HHTCSCCCEEEEEECTTCSCCCSCHHHHHHH---HH---------------------H-H-TCCEEEECTTTCTTHHHHH
T ss_pred             hcCCCCCcEEEEEEchhhhhcccCHHHHHHH---HH---------------------H-c-CCeEEEecCCCCCCHHHHH
Confidence               2379999999999998632211111111   11                     1 1 2579999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T 2ce2_X          157 YTLVREIR  164 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.72  E-value=3.3e-17  Score=147.71  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-hhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~~~~~P~IlVlNKiDl~  244 (426)
                      ..+.||||||+.++..   .   ....+  ..+|++++|+|+........    ...++..+ ...+.|+++|+||+|+.
T Consensus        93 ~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~D~~~~~s~~~----~~~~~~~i~~~~~~piilv~NK~D~~  160 (208)
T 3clv_A           93 IKFDIWDTAGQERYAS---I---VPLYY--RGATCAIVVFDISNSNTLDR----AKTWVNQLKISSNYIIILVANKIDKN  160 (208)
T ss_dssp             EEEEEEECTTGGGCTT---T---HHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSCCEEEEEEECTTCC
T ss_pred             eEEEEEECCCcHHHHH---H---HHHHh--cCCCEEEEEEECCCHHHHHH----HHHHHHHHHhhCCCcEEEEEECCCcc
Confidence            6789999999877521   1   11112  35799999999976432211    11122222 23459999999999932


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .....   ...+..+..                     .  ...+++++||++|.|+.+++++|.+.+..
T Consensus       161 ~~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          161 KFQVD---ILEVQKYAQ---------------------D--NNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CCSC---HHHHHHHHH---------------------H--TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCC---HHHHHHHHH---------------------H--cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            21111   111111111                     1  13579999999999999999999887754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.72  E-value=8.6e-17  Score=144.10  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=70.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh----ccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~----~~~P~IlVlNKi  241 (426)
                      ..+.||||||+.++.      ......+  ..+|++++|+|+........    ...++..+..    .++|+++|+||+
T Consensus        70 ~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i~~~~~~~~~piilv~nK~  137 (195)
T 3bc1_A           70 IHLQLWDTAGLERFR------SLTTAFF--RDAMGFLLLFDLTNEQSFLN----VRNWISQLQMHAYSENPDIVLCGNKS  137 (195)
T ss_dssp             EEEEEEEECCSGGGH------HHHHHTT--TTCSEEEEEEETTCHHHHHT----HHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred             EEEEEEeCCCcHHHH------HHHHHHH--cCCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            588999999996641      1111111  35799999999976432211    1112222221    578999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      |+.......  ......+..                      .+ ..+++++||++|.|+.+++++|.+.+.+.
T Consensus       138 Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          138 DLEDQRAVK--EEEARELAE----------------------KY-GIPYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TCGGGCCSC--HHHHHHHHH----------------------HH-TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccC--HHHHHHHHH----------------------Hc-CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            997542210  011111110                      11 25799999999999999999999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.72  E-value=3.3e-17  Score=147.83  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+++|++..+.....       +..     +......                  .+..  
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~--   65 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTI-----GVEFGAR------------------MVNI--   65 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------C-----CSSEEEE------------------EEEE--
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Ccc-----cceeEEE------------------EEEE--
Confidence            3456799999999999999999999876442110       000     0000000                  0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++...  .    ...+  ..+|++++|+|+........    ...++.
T Consensus        66 ----------------~~~~~~~~i~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~l~  117 (191)
T 2a5j_A           66 ----------------DGKQIKLQIWDTAGQESFRSI--T----RSYY--RGAAGALLVYDITRRETFNH----LTSWLE  117 (191)
T ss_dssp             ----------------TTEEEEEEEECCTTGGGTSCC--C----HHHH--TTCSEEEEEEETTCHHHHHT----HHHHHH
T ss_pred             ----------------CCEEEEEEEEECCCchhhhhh--H----HHHh--ccCCEEEEEEECCCHHHHHH----HHHHHH
Confidence                            012357899999998765211  1    1111  34799999999975322111    111222


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .+.   ..++|++||+||+|+.......  ......+..                     .  ...+++++||++|.|+.
T Consensus       118 ~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A          118 DARQHSSSNMVIMLIGNKSDLESRRDVK--REEGEAFAR---------------------E--HGLIFMETSAKTACNVE  172 (191)
T ss_dssp             HHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHH
T ss_pred             HHHHhcCCCCCEEEEEECcccCCccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHH
Confidence            222   3478999999999997543210  011111110                     1  12579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (191)
T 2a5j_A          173 EAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.72  E-value=1.1e-17  Score=171.15  Aligned_cols=158  Identities=25%  Similarity=0.300  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.||||||||+|+|++...+.            +...|++|    ++...              +.+.      
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~T----~d~~~--------------~~~~------   47 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRIY--------------SSAE------   47 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CEE--------------EECT------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCCc----cceEE--------------EEEE------
Confidence            689999999999999999999876542            33344443    22110              0011      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                   ..+..+.||||||+....  ......+.....  ...+|++|+|+|+..+....+.     .+...+
T Consensus        48 -------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~-----~~~~~l  107 (436)
T 2hjg_A           48 -------------WLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE-----EVAKIL  107 (436)
T ss_dssp             -------------TCSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH-----HHHHHH
T ss_pred             -------------ECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-----HHHHHH
Confidence                         244689999999996321  111122222111  1347999999999988776542     234456


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh--cCCceEEeecccCCCHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ...++|++||+||+|+.....      ...                         +++  +..+++++||++|.|+.+|+
T Consensus       108 ~~~~~pvilv~NK~D~~~~~~------~~~-------------------------~~~~lg~~~~~~iSA~~g~gv~~L~  156 (436)
T 2hjg_A          108 YRTKKPVVLAVNKLDNTEMRA------NIY-------------------------DFYSLGFGEPYPISGTHGLGLGDLL  156 (436)
T ss_dssp             TTCCSCEEEEEECCCC-----------CCC-------------------------SSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred             HHcCCCEEEEEECccCccchh------hHH-------------------------HHHHcCCCCeEEEeCcCCCChHHHH
Confidence            678899999999999875421      000                         111  22478999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      +++.+.+++
T Consensus       157 ~~i~~~l~~  165 (436)
T 2hjg_A          157 DAVAEHFKN  165 (436)
T ss_dssp             HHHHHTGGG
T ss_pred             HHHHHhcCc
Confidence            999887763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=147.78  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++......            ...++.+ ...                   ..+.    
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~------------~~~~~~~-~~~-------------------~~~~----   46 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL------------HEQLGED-VYE-------------------RTLT----   46 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----------------CCCSSSS-EEE-------------------EEEE----
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc------------cCccccc-eeE-------------------EEEE----
Confidence            457899999999999999999998764321            1111110 000                   0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +.             .....+.+|||||+....     ...+...+ ...++++++|+|.....+   +.. ...+...+
T Consensus        47 ~~-------------~~~~~~~~~D~~g~~~~~-----~~~~~~~~-~~~~~~~i~v~d~~~~~s---~~~-~~~~~~~l  103 (175)
T 2nzj_A           47 VD-------------GEDTTLVVVDTWEAEKLD-----KSWSQESC-LQGGSAYVIVYSIADRGS---FES-ASELRIQL  103 (175)
T ss_dssp             ET-------------TEEEEEEEECCC------------CHHHHHT-TTSCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred             EC-------------CEEEEEEEEecCCCCccc-----hhhhHHhh-cccCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence            00             123578999999986631     01111111 134789999999865322   111 11122222


Q ss_pred             hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..    .++|+|+|+||+|+.......  ......+..                     . + ..+++++||++|.|+.+
T Consensus       104 ~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~  158 (175)
T 2nzj_A          104 RRTHQADHVPIILVGNKADLARCREVS--VEEGRACAV---------------------V-F-DCKFIETSATLQHNVAE  158 (175)
T ss_dssp             HHCC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H-H-TSEEEECBTTTTBSHHH
T ss_pred             HHhhccCCCCEEEEEEChhhccccccC--HHHHHHHHH---------------------H-c-CCeEEEEecCCCCCHHH
Confidence            22    379999999999998643211  001111000                     1 1 25799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+...
T Consensus       159 l~~~l~~~~~~~  170 (175)
T 2nzj_A          159 LFEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998877543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.72  E-value=5.9e-18  Score=167.74  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      +.|+|+|+||||||||+|+|++...             .+..+|++|                  +.++-+++..     
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~-------------~i~~~~ftT------------------l~p~~g~v~~-----  202 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKP-------------KIADYHFTT------------------LVPNLGMVET-----  202 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECC-------------EESSTTSSC------------------CCCCEEEEEC-----
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCC-------------ccccCCccc------------------cCceEEEEEe-----
Confidence            4699999999999999999998652             244555555                  1222222221     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCccccc-chhchHHHHHHHHHhcCCcEEEEEEeCCCCC--CchhhhhhHHHHHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~-~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~--~~~~~~~~~l~~~~~  226 (426)
                                   .....++||||||+.+.. .+..+.....+.+  ..++++|+|+|++...  .+....   ..+...
T Consensus       203 -------------~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--~~~d~ll~VvD~s~~~~~~~~~~~---~~~~~e  264 (342)
T 1lnz_A          203 -------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--ERTRVIVHVIDMSGLEGRDPYDDY---LTINQE  264 (342)
T ss_dssp             -------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--HHCCEEEEEEESSCSSCCCHHHHH---HHHHHH
T ss_pred             -------------CCCceEEEecCCCCcccccccchhHHHHHHHH--HhccEEEEEEECCcccccChHHHH---HHHHHH
Confidence                         122679999999987632 1223333333333  2369999999997632  222211   112222


Q ss_pred             Hhh-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          227 LYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       227 l~~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +..     .++|.+||+||+|+.....   .   +..+...                     +....+++++||++|.|+
T Consensus       265 L~~~~~~l~~~p~ilV~NK~Dl~~~~e---~---~~~l~~~---------------------l~~~~~v~~iSA~tg~gi  317 (342)
T 1lnz_A          265 LSEYNLRLTERPQIIVANKMDMPEAAE---N---LEAFKEK---------------------LTDDYPVFPISAVTREGL  317 (342)
T ss_dssp             HHHSCSSTTTSCBCBEEECTTSTTHHH---H---HHHHHHH---------------------CCSCCCBCCCSSCCSSTT
T ss_pred             HHHhhhhhcCCCEEEEEECccCCCCHH---H---HHHHHHH---------------------hhcCCCEEEEECCCCcCH
Confidence            222     4799999999999987542   1   1111111                     111157899999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 014354          302 EAYFKAVEESAQEFME  317 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~  317 (426)
                      ++|+.+|.+.+.+.++
T Consensus       318 ~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          318 RELLFEVANQLENTPE  333 (342)
T ss_dssp             HHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHhhCcc
Confidence            9999999988876544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.72  E-value=3.1e-17  Score=147.84  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=99.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+|+|++.......             .+.. ..+...                 ..+..  
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~-~~~~~~-----------------~~~~~--   60 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-------------ISTI-GVDFKI-----------------RTIEL--   60 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-------------CCCS-SEEEEE-----------------EEEEE--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC-------------CCcc-cceEEE-----------------EEEEE--
Confidence            34578999999999999999999987643211             1101 000000                 00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+..+..   .   ....+  ..+|++++|+|+........ ....+..+..
T Consensus        61 ---------------~~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~  116 (196)
T 3tkl_A           61 ---------------DGKTIKLQIWDTAGQERFRT---I---TSSYY--RGAHGIIVVYDVTDQESFNN-VKQWLQEIDR  116 (196)
T ss_dssp             ---------------TTEEEEEEEEEECCSGGGCT---T---HHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred             ---------------CCEEEEEEEEECCCcHhhhh---h---HHHHH--hhCCEEEEEEECcCHHHHHH-HHHHHHHHHH
Confidence                           01225789999999876521   1   11122  45799999999976322111 1111111222


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|+|||+||+|+........  .....+.                      .. ...+++++||++|.|+.+++.
T Consensus       117 ~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~~-~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A          117 YASENVNKLLVGNKCDLTTKKVVDY--TTAKEFA----------------------DS-LGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             HSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHH----------------------HH-TTCCEEEECTTTCTTHHHHHH
T ss_pred             hcCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HH-cCCcEEEEeCCCCCCHHHHHH
Confidence            2234789999999999986542210  0111111                      11 235799999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.+.+...
T Consensus       172 ~l~~~i~~~  180 (196)
T 3tkl_A          172 TMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887664

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.72  E-value=2.6e-17  Score=148.11  Aligned_cols=164  Identities=13%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+|+|++..+.....       +..     +......                  .+..   
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~---   66 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV-------STV-----GIDFKVK------------------TVYR---   66 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC-------CCC-----CCEEEEE------------------EEEE---
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC-------Cce-----eEEEEEE------------------EEEE---
Confidence            345799999999999999999999876432110       000     0000000                  0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+..+.....      ..  ...+|++++|+|+.....   +. ....++..
T Consensus        67 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~--~~~~d~ii~v~d~~~~~s---~~-~~~~~~~~  119 (189)
T 2gf9_A           67 ---------------HDKRIKLQIWDTAGQERYRTITT------AY--YRGAMGFLLMYDIANQES---FA-AVQDWATQ  119 (189)
T ss_dssp             ---------------TTEEEEEEEEECCSCCSSCCSGG------GG--GTTCSEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred             ---------------CCeEEEEEEEeCCCcHHHhhhHH------Hh--ccCCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence                           01235789999999876521110      01  134799999999865322   11 11122222


Q ss_pred             Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..   .++|++||+||+|+.......  ......+..                     . + ..+++++||++|.|+.+
T Consensus       120 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~  174 (189)
T 2gf9_A          120 IKTYSWDNAQVILVGNKCDLEDERVVP--AEDGRRLAD---------------------D-L-GFEFFEASAKENINVKQ  174 (189)
T ss_dssp             HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSHHH
T ss_pred             HHHhcCCCCCEEEEEECcccccccCCC--HHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHH
Confidence            332   478999999999997643210  011111111                     1 1 24799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+.+.
T Consensus       175 l~~~l~~~i~~~  186 (189)
T 2gf9_A          175 VFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.72  E-value=1.6e-17  Score=145.96  Aligned_cols=114  Identities=13%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEec
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNK  240 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNK  240 (426)
                      ...+.+|||||+.++..      .+...+ ...+|++++|+|+....+   +... ...+..+.    ..++|+++|+||
T Consensus        50 ~~~~~i~D~~g~~~~~~------~~~~~~-~~~~d~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~~p~ilv~nK  118 (169)
T 3q85_A           50 EVTLIVYDIWEQGDAGG------WLQDHC-LQTGDAFLIVFSVTDRRS---FSKV-PETLLRLRAGRPHHDLPVILVGNK  118 (169)
T ss_dssp             EEEEEEECCCCC--------------CHH-HHHCSEEEEEEETTCHHH---HHTH-HHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred             EEEEEEEECCCccccch------hhhhhh-hccCCEEEEEEECCChHH---HHHH-HHHHHHHHhcccCCCCCEEEEeeC
Confidence            36788999999976521      011111 122689999999875321   1111 11111222    237999999999


Q ss_pred             CCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       241 iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +|+.......  ......+.                      .. ...+++++||++|.|+.+++++|.+.+..
T Consensus       119 ~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          119 SDLARSREVS--LEEGRHLA----------------------GT-LSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchhhcccCC--HHHHHHHH----------------------HH-cCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            9997543211  00111111                      11 13579999999999999999999887653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.72  E-value=4.1e-17  Score=172.60  Aligned_cols=132  Identities=22%  Similarity=0.332  Sum_probs=80.3

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.||||||+.++......+        ...+|++|+|+|+..++.++++     ..+..+...++|+|+|+||+|+..
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~--------~~~aD~aILVvDa~~Gv~~qT~-----e~l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRG--------GALADLAILIVDINEGFKPQTQ-----EALNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSS--------SBSCSEEEEEEETTTCCCHHHH-----HHHHHHHHTTCCEEEEEECGGGST
T ss_pred             CCEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEEECCCCccHhHH-----HHHHHHHHcCCeEEEEeccccccc
Confidence            469999999998874322211        1347999999999998877663     344456678899999999999974


Q ss_pred             hHh--------------HHHHHHHHH----HHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          246 HEF--------------ALEWMQDFE----VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       246 ~~~--------------~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...              ...+...+.    .+...+... .+.....    ..+..+....+++++||++|.|+.+|+++
T Consensus       137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~-gl~~e~~----~~l~~~~~~vpvv~vSA~tG~GI~eLl~~  211 (594)
T 1g7s_A          137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEE-GFESERF----DRVTDFASQVSIIPISAITGEGIPELLTM  211 (594)
T ss_dssp             TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT-TCEEEEG----GGCSCTTTEEEEEECCTTTCTTHHHHHHH
T ss_pred             ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHc-CcchHHH----HHHHhccCcceEEEEeccCCCCchhHHHH
Confidence            210              011111111    111110000 0000000    00011223458999999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |...++..
T Consensus       212 I~~~~~~~  219 (594)
T 1g7s_A          212 LMGLAQQY  219 (594)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhcccc
Confidence            99887653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.72  E-value=1e-17  Score=147.23  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++........       |.+.......                        .+.    
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~t~~~~~~~~------------------------~~~----   49 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI-------TTLGASFLTK------------------------KLN----   49 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC-------CCCSCEEEEE------------------------EEE----
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCC-------CccceEEEEE------------------------EEE----
Confidence            45789999999999999999999876432110       1110000000                        000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +.             .....+.||||||+.++..       +... ....+|++++|+|+....+... ....+..+...
T Consensus        50 ~~-------------~~~~~l~i~Dt~G~~~~~~-------~~~~-~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~  107 (170)
T 1z08_A           50 IG-------------GKRVNLAIWDTAGQERFHA-------LGPI-YYRDSNGAILVYDITDEDSFQK-VKNWVKELRKM  107 (170)
T ss_dssp             SS-------------SCEEEEEEEECCCC--------------CC-SSTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred             EC-------------CEEEEEEEEECCCcHhhhh-------hHHH-HhccCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence            00             1235789999999866421       1100 1134799999999875332111 11111112222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|+++|+||+|+.......  ......+..                      . ...+++++||++|.|+.+++++
T Consensus       108 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A          108 LGNEICLCIVGNKIDLEKERHVS--IQEAESYAE----------------------S-VGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             HGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHH----------------------H-TTCEEEEEBTTTTBSHHHHHHH
T ss_pred             cCCCCeEEEEEECcccccccccC--HHHHHHHHH----------------------H-cCCeEEEecCCCCCCHHHHHHH
Confidence            23578999999999997643211  011111110                      1 1357999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.72  E-value=4.3e-19  Score=179.39  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH-H
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-A  307 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~-~  307 (426)
                      ...+|+|+|+||+|+....    +...+.....                     .  .+.++|++||+.+.|+.++++ .
T Consensus       212 ~~~kP~i~v~NK~D~~~~~----~l~~l~~~~~---------------------~--~~~~vv~iSA~~e~~l~~L~~~~  264 (397)
T 1wxq_A          212 RVNKPMVIAANKADAASDE----QIKRLVREEE---------------------K--RGYIVIPTSAAAELTLRKAAKAG  264 (397)
T ss_dssp             HHHSCEEEEEECGGGSCHH----HHHHHHHHHH---------------------H--TTCEEEEECHHHHHHHHSCSSSC
T ss_pred             ccCCCEEEEEeCccccchH----HHHHHHHHHh---------------------h--cCCcEEEEeccchhhHHHHHhhh
Confidence            3569999999999988432    2222221000                     0  135799999999999999887 8


Q ss_pred             HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 014354          308 VEESAQEFMETYKADLDKRRAEKQRLEEERQKENINK  344 (426)
Q Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~  344 (426)
                      +.+.+|..+++||.+..+....+  +.+.+|+++|..
T Consensus       265 l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~  299 (397)
T 1wxq_A          265 FIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDR  299 (397)
T ss_dssp             CCCSCC-------------------CTTHHHHHHTSS
T ss_pred             hhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHH
Confidence            88899999999999877765554  567777666553

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.72  E-value=1.8e-17  Score=149.03  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=98.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||+|+|++.....        ..|.+.       +                      ......
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-------~----------------------~~~~~~   62 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--------TVPTVG-------V----------------------NLETLQ   62 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--------ECSSTT-------C----------------------CEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC--------cCCCCc-------e----------------------EEEEEE
Confidence            467899999999999999999997654321        011110       0                      000000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.||||||+.++......      .  ...+|++++|+|+....+.....   ..+...
T Consensus        63 ----------------~~~~~~~~~Dt~G~~~~~~~~~~------~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~  115 (189)
T 2x77_A           63 ----------------YKNISFEVWDLGGQTGVRPYWRC------Y--FSDTDAVIYVVDSTDRDRMGVAK---HELYAL  115 (189)
T ss_dssp             ----------------ETTEEEEEEEECCSSSSCCCCSS------S--STTCCEEEEEEETTCCTTHHHHH---HHHHHH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHHHHHH------H--hhcCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence                            12468899999999765211100      0  13479999999997653322111   111222


Q ss_pred             Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..   .++|+++|+||+|+.......++...+                     +... ......+++++||++|.|+.+
T Consensus       116 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~~~~Sa~~~~gi~~  173 (189)
T 2x77_A          116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQL---------------------GVSS-IMNRTWTIVKSSSKTGDGLVE  173 (189)
T ss_dssp             HTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CCSSCEEEEECCTTTCTTHHH
T ss_pred             HhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh---------------------Chhh-ccCCceEEEEccCCCccCHHH
Confidence            222   478999999999998753222221111                     0000 001124799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|.+.+.+
T Consensus       174 l~~~l~~~i~~  184 (189)
T 2x77_A          174 GMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.72  E-value=4e-17  Score=144.55  Aligned_cols=165  Identities=15%  Similarity=0.180  Sum_probs=95.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++..+.....       |..       ..+..                    ..... 
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-------~~~~~--------------------~~~~~-   50 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF-------HTI-------GVEFL--------------------NKDLE-   50 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----------CC-------SEEEE--------------------EEEEE-
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Cce-------eeeEE--------------------EEEEE-
Confidence            45789999999999999999999876432110       000       00000                    00000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +.             .....+.||||||+.++.       .+... ....+|++++|+|+....+.... ...+..+...
T Consensus        51 ~~-------------~~~~~~~i~Dt~G~~~~~-------~~~~~-~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~  108 (177)
T 1wms_A           51 VD-------------GHFVTMQIWDTAGQERFR-------SLRTP-FYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYY  108 (177)
T ss_dssp             ET-------------TEEEEEEEEECCCCGGGH-------HHHGG-GGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHH
T ss_pred             EC-------------CEEEEEEEEeCCCchhhh-------hhHHH-HHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHH
Confidence            00             122578999999987651       11111 11347999999999764322111 1111111111


Q ss_pred             hh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       228 ~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..    .++|+++|+||+|+.......+.   ...+.                      ......+++++||++|.|+.+
T Consensus       109 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~---~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A          109 ADVKEPESFPFVILGNKIDISERQVSTEE---AQAWC----------------------RDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             HTCSCTTTSCEEEEEECTTCSSCSSCHHH---HHHHH----------------------HHTTCCCEEECCTTTCTTHHH
T ss_pred             ccccccCCCcEEEEEECCcccccccCHHH---HHHHH----------------------HhcCCceEEEEeCCCCCCHHH
Confidence            11    57899999999999743211111   11111                      112346799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++++|.+.+..
T Consensus       164 l~~~l~~~~~~  174 (177)
T 1wms_A          164 AFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.72  E-value=1.2e-17  Score=151.10  Aligned_cols=166  Identities=16%  Similarity=0.056  Sum_probs=97.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+....              ..+........+                 ..   
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--------------~~t~~~~~~~~~-----------------~~---   66 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--------------VPTVFENFSHVM-----------------KY---   66 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------CCCSEEEEEEEE-----------------EE---
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--------------CCeeeeeeEEEE-----------------EE---
Confidence            35579999999999999999999987643211              111100000000                 00   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ....+.+.||||||+.++......        ....+|++++|+|+....+.....   ..+...
T Consensus        67 ---------------~~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~  120 (194)
T 3reg_A           67 ---------------KNEEFILHLWDTAGQEEYDRLRPL--------SYADSDVVLLCFAVNNRTSFDNIS---TKWEPE  120 (194)
T ss_dssp             ---------------TTEEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHH---HTHHHH
T ss_pred             ---------------CCEEEEEEEEECCCcHHHHHHhHh--------hccCCcEEEEEEECCCHHHHHHHH---HHHHHH
Confidence                           013356799999998775211110        113479999999997542211110   111222


Q ss_pred             Hh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +.  ..++|+|||+||+|+...............+.                      ..++...++++||++|.|+.++
T Consensus       121 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          121 IKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----------------------QKLGCVAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             HHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH----------------------HHHTCSCEEECBTTTTBSHHHH
T ss_pred             HHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH----------------------HhcCCCEEEEeecCCCCCHHHH
Confidence            22  23689999999999975321100011111111                      1123334999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +++|.+.+..
T Consensus       179 ~~~l~~~i~~  188 (194)
T 3reg_A          179 FEKSVDCIFS  188 (194)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=154.06  Aligned_cols=176  Identities=16%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+....       .|... ..+...                       +..    
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-------~~t~~-~~~~~~-----------------------~~~----   77 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY-------TPTVF-ERYMVN-----------------------LQV----   77 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC--------------CCCCC-EEEEEE-----------------------EEE----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-------CCccc-eeEEEE-----------------------EEE----
Confidence            4579999999999999999999986543210       01000 000000                       000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++.       .+...+ ...+|++++|+|+....   .+......++..+
T Consensus        78 --------------~~~~~~l~l~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~  132 (214)
T 2j1l_A           78 --------------KGKPVHLHIWDTAGQDDYD-------RLRPLF-YPDASVLLLCFDVTSPN---SFDNIFNRWYPEV  132 (214)
T ss_dssp             --------------TTEEEEEEEEEC-----------------------CEEEEEEEEETTCHH---HHHHHHHTHHHHH
T ss_pred             --------------CCEEEEEEEEECCCchhhh-------HHHHHH-hccCCEEEEEEECcCHH---HHHHHHHHHHHHH
Confidence                          0123578999999987652       111111 13469999999987532   2211111122222


Q ss_pred             hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      ..  .++|+|||+||+|+..............            ...+....+..+...++..+++++||++|.|+.+++
T Consensus       133 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~  200 (214)
T 2j1l_A          133 NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNG------------LEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF  200 (214)
T ss_dssp             HHHCSSCCEEEEEECGGGGSCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             HHhCCCCCEEEEEEChhhhccchhhhhhcccc------------cCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence            22  3789999999999987653322211000            000000001111112233479999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+.+.
T Consensus       201 ~~l~~~~~~~  210 (214)
T 2j1l_A          201 QEAAEVALSS  210 (214)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999877653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.71  E-value=2.2e-17  Score=149.35  Aligned_cols=167  Identities=17%  Similarity=0.215  Sum_probs=95.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .....+|+|+|.+|||||||+|+|++..+....       .|.+     +......                  .+..  
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------~~t~-----~~~~~~~------------------~~~~--   70 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-------KSTV-----GVDFKIK------------------TVEL--   70 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC---------------CCT-----TEEEEEE------------------EEEE--
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-------CCcc-----ceeEEEE------------------EEEE--
Confidence            344578999999999999999999987643210       0111     0000000                  0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++.      ......+  ..+|++|+|+|+....+.... ...+..+.
T Consensus        71 ----------------~~~~~~l~l~Dt~G~~~~~------~~~~~~~--~~~d~iilV~D~~~~~s~~~~-~~~~~~i~  125 (192)
T 2il1_A           71 ----------------RGKKIRLQIWDTAGQERFN------SITSAYY--RSAKGIILVYDITKKETFDDL-PKWMKMID  125 (192)
T ss_dssp             ----------------TTEEEEEEEEEECCSGGGH------HHHHHHH--HHCSEEEEEEETTCHHHHHTH-HHHHHHHH
T ss_pred             ----------------CCeEEEEEEEeCCCcHHHH------HHHHHHh--cCCCEEEEEEECcCHHHHHHH-HHHHHHHH
Confidence                            0123578999999987652      1122222  236999999999764322111 11111222


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....++|++||+||+|+.......  ......+.                      ..+...+++++||++|.|+.+++
T Consensus       126 ~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          126 KYASEDAELLLVGNKLDCETDREIT--RQQGEKFA----------------------QQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HTSTTCEEEECBTTTTBSHHHHH
T ss_pred             HhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------HhcCCCeEEEEeCCCCCCHHHHH
Confidence            2223478999999999987543210  01111111                      11234679999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+.
T Consensus       182 ~~l~~~i~  189 (192)
T 2il1_A          182 LKLVDDIL  189 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.71  E-value=5.8e-17  Score=144.00  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++........       +.+     +.....                   ..+.    
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-----~~~~~~-------------------~~~~----   55 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE-------STI-----GAAFFS-------------------QTLA----   55 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC-------CCS-----CCSEEE-------------------EEEE----
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCC-------CCc-----eeEEEE-------------------EEEE----
Confidence            45789999999999999999999876432110       000     000000                   0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +             ......+.||||||+.++...      ....+  ..+|++++|+|+.....   +.. ...++..+
T Consensus        56 ~-------------~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~  110 (181)
T 2efe_B           56 V-------------NDATVKFEIWDTAGQERYHSL------APMYY--RGAAAAIIVFDVTNQAS---FER-AKKWVQEL  110 (181)
T ss_dssp             E-------------TTEEEEEEEEECCCSGGGGGG------THHHH--TTCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred             E-------------CCEEEEEEEEeCCCChhhhhh------hHHHh--ccCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence            0             012357899999998765211      11111  34799999999865332   111 11222222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.++
T Consensus       111 ~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l  165 (181)
T 2efe_B          111 QAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQ---------------------E--NGLFFMETSAKTATNVKEI  165 (181)
T ss_dssp             HHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEECCSSSCTTHHHH
T ss_pred             HHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHH
Confidence            2   2378999999999997643210  011111110                     0  1357999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +.+|.+.+..
T Consensus       166 ~~~l~~~~~~  175 (181)
T 2efe_B          166 FYEIARRLPR  175 (181)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHh
Confidence            9999886654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.71  E-value=5.4e-17  Score=142.08  Aligned_cols=161  Identities=17%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++........       |       +...+....                .+..    
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~-------t~~~~~~~~----------------~~~~----   49 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK-------K-------TIGVDFLER----------------QIQV----   49 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS-------C-------CCSSSEEEE----------------EEEE----
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-------C-------ceEEEEEEE----------------EEEE----
Confidence            45789999999999999999999875432100       0       100000000                0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++...  . .   ..+  ..+|++++|+|+....+...    ...++..+
T Consensus        50 --------------~~~~~~~~l~Dt~G~~~~~~~--~-~---~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i  103 (168)
T 1z2a_A           50 --------------NDEDVRLMLWDTAGQEEFDAI--T-K---AYY--RGAQACVLVFSTTDRESFEA----ISSWREKV  103 (168)
T ss_dssp             --------------TTEEEEEEEECCTTGGGTTCC--C-H---HHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred             --------------CCEEEEEEEEcCCCcHhHHHH--H-H---HHh--cCCCEEEEEEECcCHHHHHH----HHHHHHHH
Confidence                          012358899999998765211  1 1   111  35799999999976322111    11112222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .  ..+.|+++|+||+|+.......  ......+..                     . + ..+++++||++|.|+.+++
T Consensus       104 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~i~~l~  158 (168)
T 1z2a_A          104 VAEVGDIPTALVQNKIDLLDDSCIK--NEEAEGLAK---------------------R-L-KLRFYRTSVKEDLNVSEVF  158 (168)
T ss_dssp             HHHHCSCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSSHHHH
T ss_pred             HHhCCCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H-c-CCeEEEEecCCCCCHHHHH
Confidence            2  1478999999999987643210  011111111                     1 1 2479999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+.
T Consensus       159 ~~l~~~~~  166 (168)
T 1z2a_A          159 KYLAEKHL  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.71  E-value=2.7e-17  Score=147.89  Aligned_cols=161  Identities=16%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++......              ...++.......                 +..    
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~----   64 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE--------------YDPTIEDSYRKQ-----------------VVI----   64 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE----
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccc--------------cCCccceEEEEE-----------------EEE----
Confidence            457999999999999999999998754321              111110000000                 000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ....+.+.||||||+.++.       .+...+ ...+|++++|+|+.........    ..++..+
T Consensus        65 --------------~~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i  118 (190)
T 3con_A           65 --------------DGETCLLDILDTAGQEEYS-------AMRDQY-MRTGEGFLCVFAINNSKSFADI----NLYREQI  118 (190)
T ss_dssp             --------------TTEEEEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHH----HHHHHHH
T ss_pred             --------------CCEEEEEEEEECCChHHHH-------HHHHHh-hCcCCEEEEEEECcCHHHHHHH----HHHHHHH
Confidence                          0123578999999987642       111111 1347999999998754321111    1111112


Q ss_pred             h----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          228 Y----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       228 ~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .    ..++|+++|+||+|+.........   ...+..                     . + ..+++++||++|.|+.+
T Consensus       119 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~  172 (190)
T 3con_A          119 KRVKDSDDVPMVLVGNKCDLPTRTVDTKQ---AHELAK---------------------S-Y-GIPFIETSAKTRQGVED  172 (190)
T ss_dssp             HHHHTCSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H-H-TCCEEECCTTTCTTHHH
T ss_pred             HHHhCCCCCeEEEEEECCcCCcccCCHHH---HHHHHH---------------------H-c-CCeEEEEeCCCCCCHHH
Confidence            2    247899999999999763211111   111111                     1 1 24799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+...
T Consensus       173 l~~~l~~~~~~~  184 (190)
T 3con_A          173 AFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999877653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=6.2e-17  Score=147.99  Aligned_cols=166  Identities=16%  Similarity=0.214  Sum_probs=96.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|.+|||||||+|+|++..+...             ..+ +...+..                    .....
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~-~~~~~~~--------------------~~~~~   63 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPS-------------FIT-TIGIDFK--------------------IKTVD   63 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCS-------------SSC-CCSCCEE--------------------EEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcc-------------cCC-cccceEE--------------------EEEEE
Confidence            4568999999999999999999998764321             011 0000000                    00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       +.             .....+.||||||+..+...  .    ...+  ..+|++++|+|+........ ....+..+..
T Consensus        64 -~~-------------~~~~~~~l~Dt~G~~~~~~~--~----~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~  120 (213)
T 3cph_A           64 -IN-------------GKKVKLQLWDTAGQERFRTI--T----TAYY--RGAMGIILVYDVTDERTFTN-IKQWFKTVNE  120 (213)
T ss_dssp             -ET-------------TEEEEEEEECCTTGGGGTCC--C----HHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred             -EC-------------CEEEEEEEEeCCCcHHHHHH--H----HHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHH
Confidence             00             12257899999998765211  1    1111  35799999999875332111 1111111111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|++||+||+|+............+   ..                      .+ ..+++++||++|.|+.+++.
T Consensus       121 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~----------------------~~-~~~~~~~Sa~~~~gi~~l~~  174 (213)
T 3cph_A          121 HANDEAQLLLVGNKSDMETRVVTADQGEAL---AK----------------------EL-GIPFIESSAKNDDNVNEIFF  174 (213)
T ss_dssp             HTTTCSEEEEEEECTTCSSCCSCHHHHHHH---HH----------------------HH-TCCEEECBTTTTBSSHHHHH
T ss_pred             hcCCCCCEEEEEECCCCcccccCHHHHHHH---HH----------------------Hc-CCEEEEEeCCCCCCHHHHHH
Confidence            223478999999999995332111111111   10                      11 24799999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.+.+.+.
T Consensus       175 ~l~~~~~~~  183 (213)
T 3cph_A          175 TLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887664

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.71  E-value=4.5e-17  Score=144.37  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||+|+|++..+...             ..+.. ..+...                 ..+..   
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~-~~~~~~-----------------~~~~~---   53 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS-------------YITTI-GVDFKI-----------------RTVEI---   53 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC---C-------------CTTTB-SEEEEE-----------------EEEEE---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCc-------------cCCCc-eeEEEE-----------------EEEEE---
Confidence            457899999999999999999998764321             11100 000000                 00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+..+......      .  ...+|++++|+|+........    ...++..+
T Consensus        54 --------------~~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~----~~~~~~~~  107 (181)
T 3tw8_B           54 --------------NGEKVKLQIWDTAGQERFRTITST------Y--YRGTHGVIVVYDVTSAESFVN----VKRWLHEI  107 (181)
T ss_dssp             --------------TTEEEEEEEEEETTGGGCSSCCGG------G--GTTCSEEEEEEETTCHHHHHH----HHHHHHHH
T ss_pred             --------------CCEEEEEEEEcCCCchhhhhhHHH------H--hccCCEEEEEEECCCHHHHHH----HHHHHHHH
Confidence                          012257899999998765211110      0  134799999999976322111    11122222


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .  ..+.|+|+|+||+|+........  .....+.                      . ....+++++||++|.|+.+++
T Consensus       108 ~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B          108 NQNCDDVCRILVGNKNDDPERKVVET--EDAYKFA----------------------G-QMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             HHHCTTSEEEEEEECTTCGGGCCSCH--HHHHHHH----------------------H-HHTCCEEECBTTTTBSHHHHH
T ss_pred             HHhCCCCCEEEEEECCCCchhcccCH--HHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHH
Confidence            2  23689999999999876432110  0111010                      0 113579999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          306 KAVEESAQEFM  316 (426)
Q Consensus       306 ~~l~~~~~~~~  316 (426)
                      ++|.+.+....
T Consensus       163 ~~l~~~~~~~~  173 (181)
T 3tw8_B          163 NCITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998876643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.71  E-value=3.2e-17  Score=150.31  Aligned_cols=167  Identities=14%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+++|++..+....              ..+.......                 .+..   
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~--------------~~t~~~~~~~-----------------~~~~---   52 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--------------IPTVFDNFSA-----------------NVAV---   52 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--------------CCSSCCCEEE-----------------EEEC---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccC--------------CCccceeEEE-----------------EEEE---
Confidence            35679999999999999999999987643211              1111000000                 0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+.++.....       . ....+|++|+|+|+....+   +......++..
T Consensus        53 ---------------~~~~~~~~i~Dt~G~~~~~~~~~-------~-~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~  106 (212)
T 2j0v_A           53 ---------------DGQIVNLGLWDTAGQEDYSRLRP-------L-SYRGADIFVLAFSLISKAS---YENVLKKWMPE  106 (212)
T ss_dssp             ---------------SSCEEEEEEECCCCCCCCCC--C-------G-GGTTCSEEEEEEETTCHHH---HHHHHHTHHHH
T ss_pred             ---------------CCEEEEEEEEECCCcHHHHHHHH-------h-hccCCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence                           01235789999999977532111       0 1134799999999865322   21111112222


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHH------HHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALE------WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g  298 (426)
                      +..  .++|+|||+||+|+........      .......+                      ...++..+++++||++|
T Consensus       107 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~----------------------~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A          107 LRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL----------------------RKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             HHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH----------------------HHHHTCSEEEECCTTTC
T ss_pred             HHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH----------------------HHHcCCceEEEccCCCC
Confidence            332  2799999999999876432100      00111111                      11123357999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEESAQEF  315 (426)
Q Consensus       299 ~gv~~l~~~l~~~~~~~  315 (426)
                      .|+.+++++|.+.+...
T Consensus       165 ~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhhh
Confidence            99999999999887653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=8.7e-17  Score=145.07  Aligned_cols=164  Identities=15%  Similarity=0.206  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+|+|++..+.......+ +.+           ....                  .+..   
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~-----------~~~~------------------~~~~---   67 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV-GID-----------FKVK------------------TVYR---   67 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE-TTT-----------EEEE------------------EEEE---
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe-eeE-----------EEEE------------------EEEE---
Confidence            356799999999999999999999876543221111 000           0000                  0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+..+.      ......+  ..+|++++|+|+.....   +. ....++..
T Consensus        68 ---------------~~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s---~~-~~~~~~~~  120 (191)
T 3dz8_A           68 ---------------HEKRVKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEES---FN-AVQDWATQ  120 (191)
T ss_dssp             ---------------TTTTEEEEEECHHHHHHCH------HHHHHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred             ---------------CCEEEEEEEEeCCChHHHH------HHHHHHH--ccCCEEEEEEECcCHHH---HH-HHHHHHHH
Confidence                           0234678999999986641      1111122  35799999999975321   11 11122222


Q ss_pred             Hhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +..   .++|+|||+||+|+.......  ......+.                      ..+ ..+++++||++|.|+.+
T Consensus       121 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~-~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          121 IKTYSWDNAQVILVGNKCDMEEERVVP--TEKGQLLA----------------------EQL-GFDFFEASAKENISVRQ  175 (191)
T ss_dssp             HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHH-TCEEEECBTTTTBSHHH
T ss_pred             HHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HHc-CCeEEEEECCCCCCHHH
Confidence            332   578999999999986543211  00111111                      111 35799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++++|.+.+.+.
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999877553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.70  E-value=2.8e-17  Score=148.05  Aligned_cols=160  Identities=16%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||++++++..+.....       |....  +...+                       ..  
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~-------~t~~~--~~~~~-----------------------~~--   62 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES-------PEGGR--FKKEI-----------------------VV--   62 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC-------TTCEE--EEEEE-----------------------EE--
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------CCcce--EEEEE-----------------------EE--
Confidence            4456899999999999999999999876542110       11000  00000                       00  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                         .             .....+.||||||+..+.           .+  ..+|++++|+|+....   .|.. ...++.
T Consensus        63 ---~-------------~~~~~l~i~Dt~G~~~~~-----------~~--~~~~~~i~v~d~~~~~---s~~~-~~~~~~  109 (184)
T 3ihw_A           63 ---D-------------GQSYLLLIRDEGGPPELQ-----------FA--AWVDAVVFVFSLEDEI---SFQT-VYNYFL  109 (184)
T ss_dssp             ---T-------------TEEEEEEEEECSSSCCHH-----------HH--HHCSEEEEEEETTCHH---HHHH-HHHHHH
T ss_pred             ---C-------------CEEEEEEEEECCCChhhh-----------ee--cCCCEEEEEEECcCHH---HHHH-HHHHHH
Confidence               0             123577899999997751           22  2269999999997532   2211 112222


Q ss_pred             HHhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          226 ILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       226 ~l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      .+..    .++|++||+||+|+.......-.......+.                      ..++..+++++||++|.|+
T Consensus       110 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A          110 RLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS----------------------TDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             HHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHTTTCEEEEEBTTTTBTH
T ss_pred             HHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH----------------------HHcCCCeEEEecCCCCCCH
Confidence            2332    4789999999999952110000001111111                      1123467999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      .+++.+|.+.+..
T Consensus       168 ~~lf~~l~~~i~~  180 (184)
T 3ihw_A          168 ERVFQDVAQKVVA  180 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.70  E-value=5.9e-17  Score=143.38  Aligned_cols=165  Identities=18%  Similarity=0.245  Sum_probs=97.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+...              .+.+...+...                 ..+.   
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~-----------------~~~~---   58 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGT-----------------RIIE---   58 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEE-----------------EEEE---
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEE-----------------EEEE---
Confidence            3457999999999999999999998764321              11111000000                 0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       +             ......+.||||||+.++.      ......+  ..+|++++|+|+........ ....+..+..
T Consensus        59 -~-------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~  115 (179)
T 1z0f_A           59 -V-------------SGQKIKLQIWDTAGQERFR------AVTRSYY--RGAAGALMVYDITRRSTYNH-LSSWLTDARN  115 (179)
T ss_dssp             -E-------------TTEEEEEEEEECTTGGGTC------HHHHHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred             -E-------------CCeEEEEEEEECCCChHhh------hhHHHHh--ccCCEEEEEEeCcCHHHHHH-HHHHHHHHHH
Confidence             0             0123578999999987642      1112222  34699999999976432211 1111111222


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|+++|+||+|+.......  ......+..                     .  ...+++++||++|.|+.++++
T Consensus       116 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A          116 LTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAE---------------------E--NGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHH
T ss_pred             hcCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            233578999999999996543210  011111110                     1  135799999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      +|.+.+.
T Consensus       171 ~l~~~i~  177 (179)
T 1z0f_A          171 EAAKKIY  177 (179)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9987653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.70  E-value=3.2e-17  Score=148.57  Aligned_cols=161  Identities=17%  Similarity=0.179  Sum_probs=93.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+++|++..+..        ..|.+.   +..                       ..+.  
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--------~~~t~~---~~~-----------------------~~~~--   69 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT--------TIPTIG---FNV-----------------------ETVE--   69 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE--------EEEETT---EEE-----------------------EEEE--
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc--------cCCcCc---eeE-----------------------EEEE--
Confidence            4567899999999999999999998765321        011110   000                       0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                       ..+..+.||||||+.++..   .   ....+  ..+|++++|+|+....+   +......+..
T Consensus        70 -----------------~~~~~~~i~Dt~G~~~~~~---~---~~~~~--~~~d~iilv~D~~~~~s---~~~~~~~l~~  121 (192)
T 2b6h_A           70 -----------------YKNICFTVWDVGGQDKIRP---L---WRHYF--QNTQGLIFVVDSNDRER---VQESADELQK  121 (192)
T ss_dssp             -----------------ETTEEEEEEECC-----CT---T---HHHHH--HTCCEEEEEEETTCGGG---HHHHHHHHHH
T ss_pred             -----------------ECCEEEEEEECCCCHhHHH---H---HHHHh--ccCCEEEEEEECCCHHH---HHHHHHHHHH
Confidence                             1346889999999976521   1   11122  35799999999976432   2111111112


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .+.   ..++|++||+||+|+.......++...+                     +... ......+++++||++|.|++
T Consensus       122 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          122 MLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL---------------------GLQH-LRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CSSCCEEEEECBTTTTBTHH
T ss_pred             HhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh---------------------Cccc-ccCCceEEEECcCCCcCCHH
Confidence            222   2478999999999997653222222111                     1000 00112468999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          303 AYFKAVEESA  312 (426)
Q Consensus       303 ~l~~~l~~~~  312 (426)
                      +++++|.+.+
T Consensus       180 ~l~~~l~~~i  189 (192)
T 2b6h_A          180 DGLDWLSHEL  189 (192)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.70  E-value=6.2e-17  Score=148.56  Aligned_cols=185  Identities=19%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||+++|++..+....              +.+. .+..                   .+..   
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--------------~~~~-~~~~-------------------~~~~---   48 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--------------TSIT-DSSA-------------------IYKV---   48 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBC--------------CCCS-CEEE-------------------EEEC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccc--------------CCcc-eeeE-------------------EEEe---
Confidence            4578999999999999999999987643211              1010 0000                   0000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .            ......+.||||||+.++.      ..+...+ ...++++|+|+|+...........  ..+...+
T Consensus        49 -~------------~~~~~~~~i~Dt~G~~~~~------~~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~  106 (214)
T 2fh5_B           49 -N------------NNRGNSLTLIDLPGHESLR------FQLLDRF-KSSARAVVFVVDSAAFQREVKDVA--EFLYQVL  106 (214)
T ss_dssp             -S------------STTCCEEEEEECCCCHHHH------HHHHHHH-GGGEEEEEEEEETTTHHHHHHHHH--HHHHHHH
T ss_pred             -c------------CCCccEEEEEECCCChhHH------HHHHHHH-HhhCCEEEEEEECCCcCHHHHHHH--HHHHHHH
Confidence             0            0114689999999997641      1122222 234699999999975211111111  1111111


Q ss_pred             -----hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhcccc-ch-----hhh----HHHHhhhhH--hhhhcCCce
Q 014354          228 -----YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH-SY-----TST----LTNSLSLAL--DEFYKNLKS  290 (426)
Q Consensus       228 -----~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~-~~-----~~~----~~~~~~~~l--~~~~~~~~v  290 (426)
                           ...++|++||+||+|+........+...+......+.... ..     ...    +....+..+  ..+...+++
T Consensus       107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (214)
T 2fh5_B          107 IDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF  186 (214)
T ss_dssp             HHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEE
T ss_pred             hhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEE
Confidence                 1346899999999999876444334444433222110000 00     000    000000000  001115679


Q ss_pred             EEeecccC------CCHHHHHHHHHHH
Q 014354          291 VGVSSVSG------AGIEAYFKAVEES  311 (426)
Q Consensus       291 v~vSA~~g------~gv~~l~~~l~~~  311 (426)
                      +++||++|      .||++++++|.+.
T Consensus       187 ~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          187 LECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             EECBCC-------CCBCHHHHHHHHHH
T ss_pred             EEeeccCCCccccccChHHHHHHHHHh
Confidence            99999999      9999999999764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.70  E-value=1.7e-17  Score=170.76  Aligned_cols=161  Identities=18%  Similarity=0.222  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+.+|+|+|+||||||||+|+|++.....            ++..++++    ++....              .+.    
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~~--------------~i~----  268 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI------------VTDLPGTT----RDVVES--------------QLV----  268 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSC------------CSCCTTCC----HHHHHH--------------EEE----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCccc------------ccCCCCee----EEEEEE--------------EEE----
Confidence            46789999999999999999999986542            45555555    333210              000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHH-HHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~-l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.||||||+.++.  ...... +..... ...+|++|+|+|+........     ..++.
T Consensus       269 ---------------~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-----~~i~~  326 (462)
T 3geh_A          269 ---------------VGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-----QEIYE  326 (462)
T ss_dssp             ---------------ETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHH-----HHHHH
T ss_pred             ---------------ECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-----HHHHH
Confidence                           134678999999997641  111111 111111 134899999999988665433     12222


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+.  ..|+|+|+||+|+.......    .+                         ..+....+++++||++|.|+++|+
T Consensus       327 ~l~--~~piivV~NK~Dl~~~~~~~----~~-------------------------~~~~~~~~~i~iSAktg~Gi~eL~  375 (462)
T 3geh_A          327 QVK--HRPLILVMNKIDLVEKQLIT----SL-------------------------EYPENITQIVHTAAAQKQGIDSLE  375 (462)
T ss_dssp             HHT--TSCEEEEEECTTSSCGGGST----TC-------------------------CCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred             hcc--CCcEEEEEECCCCCcchhhH----HH-------------------------HHhccCCcEEEEECCCCCCHHHHH
Confidence            232  37999999999998765321    00                         112234679999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+...
T Consensus       376 ~~i~~~~~~~  385 (462)
T 3geh_A          376 TAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcc
Confidence            9999887654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.70  E-value=7.2e-17  Score=143.35  Aligned_cols=160  Identities=14%  Similarity=0.176  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||++++++..+.. .       .|.+.. .+...+                       ..    
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-------~~t~~~-~~~~~~-----------------------~~----   49 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-L-------EKTESE-QYKKEM-----------------------LV----   49 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-------SSCSSS-EEEEEE-----------------------EE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-c-------CCCcce-eEEEEE-----------------------EE----
Confidence            55789999999999999999999876432 0       011100 000000                       00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .             .....+.||||||+.++           ..+  ..+|++++|+|+....+... ....+..+..+
T Consensus        50 -~-------------~~~~~l~i~Dt~G~~~~-----------~~~--~~~d~~ilv~D~~~~~s~~~-~~~~~~~i~~~  101 (178)
T 2iwr_A           50 -D-------------GQTHLVLIREEAGAPDA-----------KFS--GWADAVIFVFSLEDENSFQA-VSRLHGQLSSL  101 (178)
T ss_dssp             -T-------------TEEEEEEEEECSSSCCH-----------HHH--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred             -C-------------CEEEEEEEEECCCCchh-----------HHH--HhCCEEEEEEECcCHHHHHH-HHHHHHHHHHH
Confidence             0             12357899999998662           111  22699999999875332111 11111112222


Q ss_pred             hh---ccCCeEEEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          228 YK---TRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       228 ~~---~~~P~IlVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      ..   .++|+|||+||+|+...  ...  .......+.                      ..+...+++++||++|.|++
T Consensus       102 ~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A          102 RGEGRGGLALALVGTQDRISASSPRVV--GDARARALX----------------------ADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             HCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHH----------------------HHHSSEEEEEEBTTTTBTHH
T ss_pred             HhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHH----------------------HhhcCCeEEEEeccccCCHH
Confidence            22   47899999999999421  110  001111111                      11224579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+...
T Consensus       158 ~lf~~l~~~~~~~  170 (178)
T 2iwr_A          158 RVFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.70  E-value=2.6e-17  Score=149.74  Aligned_cols=166  Identities=15%  Similarity=0.127  Sum_probs=95.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ......+|+|+|.+|||||||+++|++.....             ...+.++ .+...                 ..+. 
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-------------~~~~~~~-~~~~~-----------------~~~~-   66 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-------------AHEPENP-EDTYE-----------------RRIM-   66 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCG-------------GGTTTSC-TTEEE-----------------EEEE-
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCc-------------cCCCCcc-cceEE-----------------EEEE-
Confidence            34456899999999999999999998754321             1111111 00000                 0000 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                         +.             .....+.||||||+..+.      ..+...+- ..++++++|+|+....+   |.. ...++
T Consensus        67 ---~~-------------~~~~~l~i~Dt~g~~~~~------~~~~~~~~-~~~d~~ilv~d~~~~~s---~~~-~~~~~  119 (195)
T 3cbq_A           67 ---VD-------------KEEVTLVVYDIWEQGDAG------GWLRDHCL-QTGDAFLIVFSVTDRRS---FSK-VPETL  119 (195)
T ss_dssp             ---ET-------------TEEEEEEEECCCCCSGGG------HHHHHHHH-HHCSEEEEEEETTCHHH---HHT-HHHHH
T ss_pred             ---EC-------------CEEEEEEEEecCCCccch------hhhHHHhh-ccCCEEEEEEECCCHHH---HHH-HHHHH
Confidence               00             123578899999997642      11222111 23689999999865321   111 11112


Q ss_pred             HHHhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          225 SILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       225 ~~l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                      ..+..    .++|+|||+||+|+.......  ......+.                      ..+ ..+++++||++|.|
T Consensus       120 ~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a----------------------~~~-~~~~~e~Sa~~~~~  174 (195)
T 3cbq_A          120 LRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLA----------------------GTL-SCKHIETSAALHHN  174 (195)
T ss_dssp             HHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HHT-TCEEEEEBTTTTBS
T ss_pred             HHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHH----------------------HHh-CCEEEEEcCCCCCC
Confidence            22221    479999999999997643210  01111111                      111 25799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 014354          301 IEAYFKAVEESAQE  314 (426)
Q Consensus       301 v~~l~~~l~~~~~~  314 (426)
                      +.+++.+|.+.+..
T Consensus       175 v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          175 TRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.70  E-value=1e-16  Score=147.47  Aligned_cols=174  Identities=20%  Similarity=0.205  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+....... ++.+.......+..                  ..++++...   
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~------------------~~~~~~~~~---   80 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT-VGIDFREKRVVYNA------------------QGPNGSSGK---   80 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE-EEEEEEEEEEEEEC-------------------------CC---
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCc-eeEEEEEEEEEECC------------------ccccccccC---
Confidence            34578999999999999999999987654321111 11110000000000                  000011000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+.++.      ......+  ..+|++|+|+|+.....   +. ....++..
T Consensus        81 ----------------~~~~~l~l~Dt~G~~~~~------~~~~~~~--~~~d~iilV~D~~~~~s---~~-~~~~~l~~  132 (217)
T 2f7s_A           81 ----------------AFKVHLQLWDTAGQERFR------SLTTAFF--RDAMGFLLMFDLTSQQS---FL-NVRNWMSQ  132 (217)
T ss_dssp             ----------------EEEEEEEEEEEESHHHHH------HHHHHHH--TTCCEEEEEEETTCHHH---HH-HHHHHHHT
T ss_pred             ----------------ceeEEEEEEECCCcHhHH------hHHHHHh--cCCCEEEEEEECcCHHH---HH-HHHHHHHH
Confidence                            113678999999986541      1111222  45799999999965322   11 11122222


Q ss_pred             Hhh----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          227 LYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~~----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      +..    .++|+|||+||+|+.......  ......+..                      . ...+++++||++|.|+.
T Consensus       133 i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~----------------------~-~~~~~~~~Sa~~g~gi~  187 (217)
T 2f7s_A          133 LQANAYCENPDIVLIGNKADLPDQREVN--ERQARELAD----------------------K-YGIPYFETSAATGQNVE  187 (217)
T ss_dssp             CCCCCTTTCCEEEEEEECTTCGGGCCSC--HHHHHHHHH----------------------H-TTCCEEEEBTTTTBTHH
T ss_pred             HHHhcCcCCCCEEEEEECCccccccccC--HHHHHHHHH----------------------H-CCCcEEEEECCCCCCHH
Confidence            222    578999999999997543210  011111110                      1 13579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      +++++|.+.+.+.
T Consensus       188 ~l~~~l~~~i~~~  200 (217)
T 2f7s_A          188 KAVETLLDLIMKR  200 (217)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=5.4e-17  Score=142.47  Aligned_cols=158  Identities=15%  Similarity=0.165  Sum_probs=92.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+|+|++.......          ......+.    +..                 +..     
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~t~~~~~----~~~-----------------~~~-----   46 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY----------IPTVEDTY----RQV-----------------ISC-----   46 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSC----------CCCSCEEE----EEE-----------------EEE-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------CCCccccE----EEE-----------------EEE-----
Confidence            468999999999999999999986543211          00000000    000                 000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ......+.||||||+.++.      ......+  ..+|++++|+|+.....   +.. ...++..+.
T Consensus        47 -------------~~~~~~~~~~Dt~G~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~~---~~~-~~~~~~~i~  101 (172)
T 2erx_A           47 -------------DKSICTLQITDTTGSHQFP------AMQRLSI--SKGHAFILVYSITSRQS---LEE-LKPIYEQIC  101 (172)
T ss_dssp             -------------TTEEEEEEEEECCSCSSCH------HHHHHHH--HHCSEEEEEEETTCHHH---HHT-THHHHHHHH
T ss_pred             -------------CCEEEEEEEEECCCchhhH------HHHHHhc--ccCCEEEEEEECcCHHH---HHH-HHHHHHHHH
Confidence                         0123578999999987752      1111122  23689999999975321   111 111122222


Q ss_pred             h-----ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          229 K-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       229 ~-----~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .     .++|+++|+||+|+.........  ....+.                      ..+ ..+++++||++|.|+.+
T Consensus       102 ~~~~~~~~~pii~v~nK~Dl~~~~~v~~~--~~~~~~----------------------~~~-~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A          102 EIKGDVESIPIMLVGNKCDESPSREVQSS--EAEALA----------------------RTW-KCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             HHHC---CCCEEEEEECGGGGGGCCSCHH--HHHHHH----------------------HHH-TCEEEECBTTTTBSHHH
T ss_pred             HHhCCCCCCCEEEEEEccccccccccCHH--HHHHHH----------------------HHh-CCeEEEecCCCCcCHHH
Confidence            1     37899999999998764322100  011000                      011 25799999999999999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      ++++|.+.+
T Consensus       157 l~~~l~~~~  165 (172)
T 2erx_A          157 LFQELLNLE  165 (172)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999998654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.70  E-value=6.9e-18  Score=176.04  Aligned_cols=165  Identities=19%  Similarity=0.275  Sum_probs=106.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++++|+|+|++|+|||||+++|++..+...             ..+..+ .++.                 ...+..   
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-------------~~~giT-~~i~-----------------~~~v~~---   48 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-------------EAGGIT-QHIG-----------------AFLVSL---   48 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-------------SSCCBC-CCTT-----------------SCCBCS---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------------cCCcee-EEEe-----------------EEEEEe---
Confidence            567899999999999999999998875421             111111 1100                 000110   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ..+..+.||||||+..+......+.        ..+|++|+|+|+..+..+++     ...+..+
T Consensus        49 ---------------~~g~~i~~iDTPGhe~f~~~~~~~~--------~~aD~vILVVDa~dg~~~qt-----~e~l~~~  100 (537)
T 3izy_P           49 ---------------PSGEKITFLDTPGHAAFSAMRARGT--------QVTDIVILVVAADDGVMKQT-----VESIQHA  100 (537)
T ss_dssp             ---------------SCSSCCBCEECSSSCCTTTSBBSSS--------BSBSSCEEECBSSSCCCHHH-----HHHHHHH
T ss_pred             ---------------CCCCEEEEEECCChHHHHHHHHHHH--------ccCCEEEEEEECCCCccHHH-----HHHHHHH
Confidence                           1335789999999987632222111        34799999999998877655     3445556


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+...... .....+.                  ......+.|....+++++||++|.|+.+|+++
T Consensus       101 ~~~~vPiIVViNKiDl~~~~~~-~v~~~l~------------------~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~  161 (537)
T 3izy_P          101 KDAHVPIVLAINKCDKAEADPE-KVKKELL------------------AYDVVCEDYGGDVQAVHVSALTGENMMALAEA  161 (537)
T ss_dssp             HTTTCCEEECCBSGGGTTTSCC-SSSSHHH------------------HTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred             HHcCCcEEEEEecccccccchH-HHHHHHH------------------hhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence            6788999999999998753210 0000010                  00111123334568999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |...++
T Consensus       162 I~~l~~  167 (537)
T 3izy_P          162 TIALAE  167 (537)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            987654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.70  E-value=1.1e-17  Score=154.11  Aligned_cols=169  Identities=14%  Similarity=0.105  Sum_probs=98.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+|+|++..+....              ..+......                  .....   
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~------------------~~~~~---   54 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNY--------------NATVGAVNH------------------PVTFL---   54 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--------------ETTTTEEEE------------------EEEEE---
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeeE------------------EEEEE---
Confidence            4579999999999999999999976543210              000000000                  00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       ..           ......+.||||||+..+....  ..    .  ...+|++|+|+|+....+..... ..+..+...
T Consensus        55 -~~-----------~~~~~~~~l~Dt~G~~~~~~~~--~~----~--~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~  113 (218)
T 4djt_A           55 -DD-----------QGNVIKFNVWDTAGQEKKAVLK--DV----Y--YIGASGAILFFDVTSRITCQNLA-RWVKEFQAV  113 (218)
T ss_dssp             -BT-----------TSCEEEEEEEEECSGGGTSCCC--HH----H--HTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHH
T ss_pred             -eC-----------CCcEEEEEEEecCCchhhchHH--HH----H--hhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHh
Confidence             00           0111568999999987752111  11    1  13479999999997654322211 111222222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|||+||+|+........  .....+                  +     .....+++++||++|.|+.+++.+
T Consensus       114 ~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~------------------~-----~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A          114 VGNEAPIVVCANKIDIKNRQKISK--KLVMEV------------------L-----KGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             HCSSSCEEEEEECTTCC----CCH--HHHHHH------------------T-----TTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             cCCCCCEEEEEECCCCccccccCH--HHHHHH------------------H-----HHcCCcEEEEecCCCCCHHHHHHH
Confidence            334689999999999986532111  001100                  0     113467999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014354          308 VEESAQEFME  317 (426)
Q Consensus       308 l~~~~~~~~~  317 (426)
                      |.+.+.....
T Consensus       169 l~~~~~~~~~  178 (218)
T 4djt_A          169 LARIFTGRPD  178 (218)
T ss_dssp             HHHHHHCCTT
T ss_pred             HHHHHhcccc
Confidence            9998876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.70  E-value=9.5e-17  Score=146.44  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=97.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+++|++..+....             .+ +..++...                 ..+.    
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~-t~~~~~~~-----------------~~~~----   51 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY-------------IS-TIGVDFKI-----------------KTVE----   51 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC-------------CC-SSCCCEEE-----------------EEEE----
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------CC-cccceeEE-----------------EEEE----
Confidence            4578999999999999999999987643211             01 10000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +             ......+.||||||+.++.....      ..  ...+|++|+|+|+....+... ....+..+...
T Consensus        52 ~-------------~~~~~~~~l~Dt~G~~~~~~~~~------~~--~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~  109 (206)
T 2bcg_Y           52 L-------------DGKTVKLQIWDTAGQERFRTITS------SY--YRGSHGIIIVYDVTDQESFNG-VKMWLQEIDRY  109 (206)
T ss_dssp             E-------------TTEEEEEEEECCTTTTTTTCCCG------GG--GTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred             E-------------CCEEEEEEEEeCCChHHHHHHHH------Hh--ccCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence            0             01235789999999877521110      01  134799999999976432111 11111111112


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...+.|++||+||+|+.......  ......+.                      .. ...+++++||++|.|+.+++.+
T Consensus       110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y          110 ATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFA----------------------DA-NKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             SCTTCEEEEEEECTTCTTTCCSC--HHHHHHHH----------------------HH-TTCCEEECCTTTCTTHHHHHHH
T ss_pred             cCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHH
Confidence            23468999999999998643210  01111110                      01 1357999999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |.+.+.+.
T Consensus       165 l~~~i~~~  172 (206)
T 2bcg_Y          165 MARQIKES  172 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.70  E-value=2.5e-16  Score=140.99  Aligned_cols=170  Identities=20%  Similarity=0.204  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||+|+|++..+..             ...|..+ ..                    ....      
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~t-~~--------------------~~~~------   41 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-------------GKRPGVT-RK--------------------IIEI------   41 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSS-------------SSSTTCT-TS--------------------CEEE------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCcc-------------CCCCCcc-ce--------------------eEEE------
Confidence            479999999999999999999876432             2222221 00                    0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-----HHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhh---
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-----GAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSN---  219 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-----~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~---  219 (426)
                                    .-..+.+|||||+.....+...     .......+.  ...++++++|+|+.........|..   
T Consensus        42 --------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~  107 (190)
T 2cxx_A           42 --------------EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE  107 (190)
T ss_dssp             --------------EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred             --------------ecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence                          0027899999997543222111     122222333  2346789999997532211111211   


Q ss_pred             ---HHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc
Q 014354          220 ---MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV  296 (426)
Q Consensus       220 ---~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~  296 (426)
                         .......+...++|+++|+||+|+....  ....+.+   .              +.++.....+  ..+++++||+
T Consensus       108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~---~--------------~~~~~~~~~~--~~~~~~~Sa~  166 (190)
T 2cxx_A          108 IPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFL---A--------------EKFEVPLSEI--DKVFIPISAK  166 (190)
T ss_dssp             CCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHH---H--------------HHHTCCGGGH--HHHEEECCTT
T ss_pred             cHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHH---H--------------HHhhhhhhcc--CCcEEEEecC
Confidence               0122333445689999999999998754  1111111   1              1111100000  1358999999


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 014354          297 SGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       297 ~g~gv~~l~~~l~~~~~~  314 (426)
                      +|.|+.+++++|.+.+.+
T Consensus       167 ~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          167 FGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhcch
Confidence            999999999999887765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=144.43  Aligned_cols=163  Identities=18%  Similarity=0.251  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+.....       +.+. ..+.+    +.                  +..   
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~----~~------------------~~~---   69 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-------TTIG-VEFST----RT------------------VML---   69 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-------CCSS-EEEEE----EE------------------EEE---
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccc-eeEEE----EE------------------EEE---
Confidence            345799999999999999999999876542110       0000 00000    00                  000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+.++.   ..   ....+  ..+|++|+|+|+.....   +. ....++..
T Consensus        70 ---------------~~~~~~~~i~Dt~G~~~~~---~~---~~~~~--~~~d~vi~v~D~~~~~s---~~-~~~~~l~~  122 (193)
T 2oil_A           70 ---------------GTAAVKAQIWDTAGLERYR---AI---TSAYY--RGAVGALLVFDLTKHQT---YA-VVERWLKE  122 (193)
T ss_dssp             ---------------TTEEEEEEEEEESCCCTTC---TT---HHHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHH
T ss_pred             ---------------CCEEEEEEEEeCCCchhhh---hh---hHHHh--ccCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence                           0133678999999997752   11   11112  35799999999975332   11 11112222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|++||+||+|+.......  ......+.                      .. ...+++++||++|.|+.+
T Consensus       123 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A          123 LYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFA----------------------EN-NGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             HHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HH-TTCEEEEECTTTCTTHHH
T ss_pred             HHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHH
Confidence            22   3478999999999997643210  01111111                      01 235799999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          304 YFKAVEESAQE  314 (426)
Q Consensus       304 l~~~l~~~~~~  314 (426)
                      ++.+|.+.+.+
T Consensus       178 l~~~l~~~i~~  188 (193)
T 2oil_A          178 AFETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=6.4e-17  Score=146.14  Aligned_cols=164  Identities=16%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +...|+|+|.+|||||||+|+|++..+.....       |..   ..+.    +..                 +..    
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~---~~~~----~~~-----------------~~~----   51 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI-------PTI---EDTY----RQV-----------------ISC----   51 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS-------CCC---CEEE----EEE-----------------EEE----
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc-------Ccc---ccce----eEE-----------------EEE----
Confidence            55799999999999999999999865432110       000   0000    000                 000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++.      ......+  ..+|++++|+|+......... ...+..+..+
T Consensus        52 --------------~~~~~~~~l~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~  108 (199)
T 2gf0_A           52 --------------DKSVCTLQITDTTGSHQFP------AMQRLSI--SKGHAFILVFSVTSKQSLEEL-GPIYKLIVQI  108 (199)
T ss_dssp             --------------TTEEEEEEEEECCGGGSCH------HHHHHHH--HHCSEEEEEEETTCHHHHHTT-HHHHHHHHHH
T ss_pred             --------------CCEEEEEEEEeCCChHHhH------HHHHHhh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHHH
Confidence                          0123578999999987652      1111122  236899999998753221110 0011111112


Q ss_pred             h--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 ~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .  ..++|+|+|+||+|+............+   ..                     . + ..+++++||++|.|+.+++
T Consensus       109 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A          109 KGSVEDIPVMLVGNKCDETQREVDTREAQAV---AQ---------------------E-W-KCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             HSCGGGSCEEEEEECTTCSSCSSCHHHHHHH---HH---------------------H-H-TCEEEECBTTTTBSHHHHH
T ss_pred             hcCCCCCCEEEEEECccCCccccCHHHHHHH---HH---------------------H-h-CCeEEEEecCCCCCHHHHH
Confidence            2  2478999999999997632111111111   00                     1 1 2479999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+...
T Consensus       163 ~~l~~~~~~~  172 (199)
T 2gf0_A          163 QELLTLETRR  172 (199)
T ss_dssp             HHHHHHCSSS
T ss_pred             HHHHHHHhhh
Confidence            9998876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=2.4e-17  Score=149.07  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=97.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+...           .....+.+ ....                  .+...  
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~-~~~~------------------~~~~~--   68 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN-----------ISPTIGAS-FMTK------------------TVPCG--   68 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT-----------CCCCSSEE-EEEE------------------EEECS--
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------cCCCccee-EEEE------------------EEEeC--
Confidence            3457999999999999999999998764321           11111000 0000                  00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+.++...      ....+  ..+|++++|+|+........    ...++..
T Consensus        69 ----------------~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~~d~iilV~d~~~~~s~~~----~~~~~~~  120 (192)
T 2fg5_A           69 ----------------NELHKFLIWDTAGQERFHSL------APMYY--RGSAAAVIVYDITKQDSFYT----LKKWVKE  120 (192)
T ss_dssp             ----------------SSEEEEEEEEECCSGGGGGG------THHHH--TTCSEEEEEEETTCTHHHHH----HHHHHHH
T ss_pred             ----------------CEEEEEEEEcCCCchhhHhh------hHHhh--ccCCEEEEEEeCCCHHHHHH----HHHHHHH
Confidence                            13357899999998765211      11112  34799999999875432111    1122222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|++||+||+|+.......  .+....+..                     .  ...+++++||++|.|+.+
T Consensus       121 i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~  175 (192)
T 2fg5_A          121 LKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAE---------------------S--IGAIVVETSAKNAINIEE  175 (192)
T ss_dssp             HHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------T--TTCEEEECBTTTTBSHHH
T ss_pred             HHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCcCHHH
Confidence            22   2378999999999997532210  111111110                     1  135799999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEFM  316 (426)
Q Consensus       304 l~~~l~~~~~~~~  316 (426)
                      ++++|.+.+++.+
T Consensus       176 l~~~l~~~i~~~~  188 (192)
T 2fg5_A          176 LFQGISRQIPPLD  188 (192)
T ss_dssp             HHHHHHHTCC---
T ss_pred             HHHHHHHHHHhhC
Confidence            9999988766543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=2.3e-17  Score=152.32  Aligned_cols=180  Identities=15%  Similarity=0.123  Sum_probs=107.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcC----CCCCCCccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGILT  143 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~----l~~ng~i~~  143 (426)
                      +.++|+|+|++|||||||+++|++..... .++.++..++...          .+...    +...+    ..+++|+|+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~----------~d~~~----~~~~~~~~~~~~~~~~~~   93 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK----------ADYER----VRRFGIKAEAISTGKECH   93 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH----------HHHHH----HHTTTCEEEECCCTTCSS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc----------hhHHH----HHhCCCcEEEecCCceee
Confidence            45789999999999999999999886444 5667776666421          11111    11111    123455543


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      .   ....+.+   ... ...+++++||||||+.......           ....+.+++|+|+..+....  +      
T Consensus        94 ~---~~~~~~~---~~~-~~~~~d~iiidt~G~~~~~~~~-----------~~~~~~~i~vvd~~~~~~~~--~------  147 (221)
T 2wsm_A           94 L---DAHMIYH---RLK-KFSDCDLLLIENVGNLICPVDF-----------DLGENYRVVMVSVTEGDDVV--E------  147 (221)
T ss_dssp             C---CHHHHHT---TGG-GGTTCSEEEEEEEEBSSGGGGC-----------CCSCSEEEEEEEGGGCTTHH--H------
T ss_pred             c---ccHHHHH---HHH-hcCCCCEEEEeCCCCCCCCchh-----------ccccCcEEEEEeCCCcchhh--h------
Confidence            2   1111111   111 2456899999999962210000           01247899999997754211  1      


Q ss_pred             HHHHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                       ......++|.++|+||+|+....  ........+.                         .+....+++++||++|.|+
T Consensus       148 -~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi  201 (221)
T 2wsm_A          148 -KHPEIFRVADLIVINKVALAEAVGADVEKMKADAK-------------------------LINPRAKIIEMDLKTGKGF  201 (221)
T ss_dssp             -HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECBTTTTBTH
T ss_pred             -hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHH-------------------------HhCCCCeEEEeecCCCCCH
Confidence             11123468999999999986432  1112222111                         1223468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      .+++++|.+.+..
T Consensus       202 ~~l~~~l~~~~~~  214 (221)
T 2wsm_A          202 EEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.70  E-value=5.6e-17  Score=149.73  Aligned_cols=180  Identities=14%  Similarity=0.082  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+++|++..+.....       |       +........                 +..  
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~-------~-------t~~~~~~~~-----------------~~~--   70 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV-------P-------TVFENYTAC-----------------LET--   70 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC-------C-------CSEEEEEEE-----------------EEC--
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC-------C-------eeeeeEEEE-----------------EEE--
Confidence            3456899999999999999999999876442111       1       110000000                 000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++.....      ..  ...+|++|+|+|+....+   +......++.
T Consensus        71 ----------------~~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~~d~~i~v~d~~~~~s---~~~~~~~~~~  123 (214)
T 3q3j_B           71 ----------------EEQRVELSLWDTSGSPYYDNVRP------LC--YSDSDAVLLCFDISRPET---VDSALKKWRT  123 (214)
T ss_dssp             ------------------CEEEEEEEEECCSGGGTTTGG------GG--CTTCSEEEEEEETTCTHH---HHHHHTHHHH
T ss_pred             ----------------CCEEEEEEEEECCCCHhHHHHHH------HH--cCCCeEEEEEEECcCHHH---HHHHHHHHHH
Confidence                            02336789999999977521110      01  134799999999976332   2211112222


Q ss_pred             HHhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HH
Q 014354          226 ILYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IE  302 (426)
Q Consensus       226 ~l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~  302 (426)
                      .+..  .++|+|||+||+|+.........   +.   .. .     ...+....+..+...++..+++++||++|.| |.
T Consensus       124 ~i~~~~~~~piilv~nK~Dl~~~~~~~~~---~~---~~-~-----~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~  191 (214)
T 3q3j_B          124 EILDYCPSTRVLLIGCKTDLRTDLSTLME---LS---HQ-K-----QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH  191 (214)
T ss_dssp             HHHHHCTTSEEEEEEECGGGGGCHHHHHH---HH---HT-T-----CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHH
T ss_pred             HHHHhCCCCCEEEEEEChhhccchhhhhh---hc---cc-c-----cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHH
Confidence            2332  37899999999999764211000   00   00 0     0000000011111122333799999999998 99


Q ss_pred             HHHHHHHHHHHHHHh
Q 014354          303 AYFKAVEESAQEFME  317 (426)
Q Consensus       303 ~l~~~l~~~~~~~~~  317 (426)
                      +++.+|...+.....
T Consensus       192 ~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          192 SIFRTASMLCLNKPS  206 (214)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhccCc
Confidence            999999988765443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.70  E-value=7.2e-17  Score=146.76  Aligned_cols=163  Identities=15%  Similarity=0.173  Sum_probs=97.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+++|++..+.....       |.+     +......                  .+..    
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-----~~~~~~~------------------~~~~----   52 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV-------STV-----GIDFKVK------------------TIYR----   52 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC-------CCC-----SEEEEEE------------------EEEE----
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------Ccc-----ceeEEEE------------------EEEE----
Confidence            45789999999999999999999876432110       000     0000000                  0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++.       .+...+ ...+|++|+|+|+.....   +. ....++..+
T Consensus        53 --------------~~~~~~~~l~Dt~G~~~~~-------~~~~~~-~~~~d~ii~v~d~~~~~s---~~-~~~~~~~~i  106 (203)
T 1zbd_A           53 --------------NDKRIKLQIWDTAGLERYR-------TITTAY-YRGAMGFILMYDITNEES---FN-AVQDWSTQI  106 (203)
T ss_dssp             --------------TTEEEEEEEEEECCSGGGH-------HHHHTT-GGGCSEEEEEEETTCHHH---HH-HHHHHHHHH
T ss_pred             --------------CCeEEEEEEEECCCchhhc-------chHHHh-hcCCCEEEEEEECcCHHH---HH-HHHHHHHHH
Confidence                          0123588999999997641       111111 134799999999875322   11 111122222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|++||+||+|+.......  ......+..                      .+ ..+++++||++|.|+.++
T Consensus       107 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~----------------------~~-~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A          107 KTYSWDNAQVLLVGNKCDMEDERVVS--SERGRQLAD----------------------HL-GFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             HHHSCSSCEEEEEEECTTCTTSCCSC--HHHHHHHHH----------------------HH-TCEEEECBTTTTBSSHHH
T ss_pred             HHhcCCCCCEEEEEECcccCcccccC--HHHHHHHHH----------------------HC-CCeEEEEECCCCCCHHHH
Confidence            2   2478999999999997643210  011111110                      11 247999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          305 FKAVEESAQEF  315 (426)
Q Consensus       305 ~~~l~~~~~~~  315 (426)
                      +++|.+.+.+.
T Consensus       162 ~~~l~~~i~~~  172 (203)
T 1zbd_A          162 FERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.70  E-value=4.5e-17  Score=146.55  Aligned_cols=168  Identities=18%  Similarity=0.223  Sum_probs=93.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+|+|++..+.....       |.+       .++...                 ..+.. 
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~-------~~~~~~-----------------~~~~~-   64 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-------ATI-------GVDFRE-----------------RAVDI-   64 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC-------CCC-------SCCEEE-----------------EEEEE-
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CCc-------ceEEEE-----------------EEEEE-
Confidence            3456899999999999999999999876442110       000       000000                 00000 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+.++.  ...   ....+  ..+|++|+|+|+....+......-...+..
T Consensus        65 ----------------~~~~~~~~l~Dt~G~~~~~--~~~---~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~  121 (189)
T 1z06_A           65 ----------------DGERIKIQLWDTAGQERFR--KSM---VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQ  121 (189)
T ss_dssp             ----------------TTEEEEEEEEECCCSHHHH--TTT---HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ----------------CCEEEEEEEEECCCchhhh--hhh---hHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                            0123578999999986641  011   11112  357999999999753221111100011112


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC---CCHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG---AGIE  302 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g---~gv~  302 (426)
                      .+...++|++||+||+|+.......  ......+.                      .. ...+++++||++|   .|+.
T Consensus       122 ~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A          122 HLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFA----------------------DT-HSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             HCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCCEEECCSSSGGGGSCHH
T ss_pred             hcCCCCCCEEEEEECccccccceeC--HHHHHHHH----------------------HH-cCCEEEEEeCCcCCcccCHH
Confidence            2224579999999999996543211  01111111                      01 1357999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 014354          303 AYFKAVEESAQ  313 (426)
Q Consensus       303 ~l~~~l~~~~~  313 (426)
                      +++.+|.+.++
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999987664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.70  E-value=2.5e-16  Score=142.93  Aligned_cols=178  Identities=17%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ....+..+|+|+|.+|||||||++++.+.....          +.. ...++.                       ....
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----------~~~-~~~~~~-----------------------~~~~   60 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN----------ETL-FLESTN-----------------------KIYK   60 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGG----------GGG-GCCCCC-----------------------SCEE
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc----------cee-eecccc-----------------------ceee
Confidence            334566899999999999999999998854221          000 000000                       0000


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      . . +.            ......+.||||||+..+....-..   ...+  ..++++|+|+|+...... . .......
T Consensus        61 ~-~-~~------------~~~~~~l~i~Dt~G~~~~~~~~~~~---~~~~--~~~~~~i~v~d~~~~~~~-~-~~~~~~~  119 (196)
T 3llu_A           61 D-D-IS------------NSSFVNFQIWDFPGQMDFFDPTFDY---EMIF--RGTGALIYVIDAQDDYME-A-LTRLHIT  119 (196)
T ss_dssp             E-E-EC------------CTTSCCEEEEECCSSCCTTCTTCCH---HHHH--HTCSEEEEEEETTSCCHH-H-HHHHHHH
T ss_pred             e-e-cc------------CCCeeEEEEEECCCCHHHHhhhhhc---cccc--ccCCEEEEEEECCCchHH-H-HHHHHHH
Confidence            0 0 00            0234789999999998752111000   1122  247999999999875211 1 1111122


Q ss_pred             HHHH--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSIL--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      +..+  ...++|++||+||+|+............+....             .+.++..... ....+++++||++ .||
T Consensus       120 l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~-------------~~~~~~~~~~-~~~~~~~e~Sa~~-~~v  184 (196)
T 3llu_A          120 VSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA-------------NDDLADAGLE-KLHLSFYLTSIYD-HSI  184 (196)
T ss_dssp             HHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH-------------HHHHHHTTCT-TSCEEEEEECTTS-THH
T ss_pred             HHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH-------------HHHHHHhhhh-cCCcceEEEEech-hhH
Confidence            2222  234789999999999988653322222221100             0111110000 1235799999999 999


Q ss_pred             HHHHHHHHHH
Q 014354          302 EAYFKAVEES  311 (426)
Q Consensus       302 ~~l~~~l~~~  311 (426)
                      .++|..|.+.
T Consensus       185 ~~~f~~l~~~  194 (196)
T 3llu_A          185 FEAFSKVVQK  194 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.69  E-value=9.5e-17  Score=146.50  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+++|++..+.....       |.+. ..+..                       ..+.   
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~---   72 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQG-------STIG-VDFTM-----------------------KTLE---   72 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------CEEE-----------------------EEEE---
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCC-------CCcc-eEEEE-----------------------EEEE---
Confidence            345789999999999999999999876432110       0000 00000                       0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       +             ......+.||||||+.++.      ......+  ..+|++|+|+|+....+   +. ....++..
T Consensus        73 -~-------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~~~d~iilv~D~~~~~s---~~-~~~~~~~~  126 (201)
T 2hup_A           73 -I-------------QGKRVKLQIWDTAGQERFR------TITQSYY--RSANGAILAYDITKRSS---FL-SVPHWIED  126 (201)
T ss_dssp             -E-------------TTEEEEEEEECCTTCGGGH------HHHHHHH--TTCSEEEEEEETTBHHH---HH-THHHHHHH
T ss_pred             -E-------------CCEEEEEEEEECCCcHhHH------HHHHHHH--hhCCEEEEEEECCCHHH---HH-HHHHHHHH
Confidence             0             0122588999999997652      1111222  35799999999865322   11 11122222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|+|||+||+|+.......  .+....+.                      ..++..+++++||++|.|+.+
T Consensus       127 i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          127 VRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLA----------------------EHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTCSEEEECBTTTTBSHHH
T ss_pred             HHHhcCCCCCEEEEEECCccccccccC--HHHHHHHH----------------------HHcCCCEEEEEeCCCCCCHHH
Confidence            22   2568999999999997532210  11111111                      112223799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEF  315 (426)
Q Consensus       304 l~~~l~~~~~~~  315 (426)
                      ++.+|.+.+.+.
T Consensus       183 l~~~l~~~i~~~  194 (201)
T 2hup_A          183 AFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=1.1e-16  Score=144.89  Aligned_cols=165  Identities=17%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+++|++..+....       .|       +.......                 .+...  
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-------~~-------t~~~~~~~-----------------~~~~~--   72 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-------DP-------TLESTYRH-----------------QATID--   72 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------CT-------TCCEEEEE-----------------EEEET--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-------CC-------CCCceEEE-----------------EEEEC--
Confidence            45689999999999999999999987643211       01       11000000                 00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~  225 (426)
                                      .....+.||||||+.+.       ......+  ..+|++++|+|+....+.... ...+. +..
T Consensus        73 ----------------~~~~~~~l~Dt~G~~~~-------~~~~~~~--~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~  126 (196)
T 2atv_A           73 ----------------DEVVSMEILDTAGQEDT-------IQREGHM--RWGEGFVLVYDITDRGSFEEV-LPLKNILDE  126 (196)
T ss_dssp             ----------------TEEEEEEEEECCCCCCC-------HHHHHHH--HHCSEEEEEEETTCHHHHHTH-HHHHHHHHH
T ss_pred             ----------------CEEEEEEEEECCCCCcc-------cchhhhh--ccCCEEEEEEECcCHHHHHHH-HHHHHHHHH
Confidence                            12357899999998761       1111222  236899999998753211111 01111 111


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAY  304 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~l  304 (426)
                      .....++|+|||+||+|+.......  ......+..                     . + ..+++++||++|. |+.++
T Consensus       127 ~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~~gi~~l  181 (196)
T 2atv_A          127 IKKPKNVTLILVGNKADLDHSRQVS--TEEGEKLAT---------------------E-L-ACAFYECSACTGEGNITEI  181 (196)
T ss_dssp             HHTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H-H-TSEEEECCTTTCTTCHHHH
T ss_pred             hhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H-h-CCeEEEECCCcCCcCHHHH
Confidence            1123588999999999987642210  011111100                     1 1 3579999999999 99999


Q ss_pred             HHHHHHHHHHH
Q 014354          305 FKAVEESAQEF  315 (426)
Q Consensus       305 ~~~l~~~~~~~  315 (426)
                      +++|.+.+.+.
T Consensus       182 ~~~l~~~i~~~  192 (196)
T 2atv_A          182 FYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999877653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.69  E-value=1e-16  Score=140.55  Aligned_cols=163  Identities=16%  Similarity=0.171  Sum_probs=94.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++.......           ....+.+ .....                  +..    
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~-~~~~~------------------~~~----   50 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI-----------NPTIGAS-FMTKT------------------VQY----   50 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------CCCCSEE-EEEEE------------------EEE----
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------CCceeEE-EEEEE------------------EEE----
Confidence            3478999999999999999999987643210           0000000 00000                  000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++..   .   ....+  ..+|++++|+|+........ ....+..+...
T Consensus        51 --------------~~~~~~~~~~Dt~G~~~~~~---~---~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~l~~~  107 (170)
T 1z0j_A           51 --------------QNELHKFLIWDTAGLERFRA---L---APMYY--RGSAAAIIVYDITKEETFST-LKNWVRELRQH  107 (170)
T ss_dssp             --------------TTEEEEEEEEEECCSGGGGG---G---THHHH--TTCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred             --------------CCeEEEEEEEcCCCchhhhc---c---cHhhC--cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence                          01235789999999976521   1   11111  34699999999975432111 11111112212


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ....+|+++|+||+|+.......  .+....+.                      .. ...+++++||++|.|+.+++++
T Consensus       108 ~~~~~~iilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A          108 GPPSIVVAIAGNKCDLTDVREVM--ERDAKDYA----------------------DS-IHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             SCTTSEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHH
T ss_pred             CCCCCcEEEEEECCccccccccC--HHHHHHHH----------------------HH-cCCEEEEEeCCCCcCHHHHHHH
Confidence            23468899999999997643211  01111111                      01 1357999999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.69  E-value=3.1e-17  Score=168.91  Aligned_cols=160  Identities=24%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|.||||||||+|+|++.....            +...|+.+    ++..              -+.+.   
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------v~~~~g~t----~~~~--------------~~~~~---   67 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE---   67 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CE--------------EEECT---
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcc----eeEE--------------EEEEE---
Confidence            346799999999999999999999976432            23333333    1111              00011   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                                      ..+..+.||||||+...  .......+.....  ...+|++|+|+|+..++...+.     .+.
T Consensus        68 ----------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~-----~l~  124 (456)
T 4dcu_A           68 ----------------WLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE-----EVA  124 (456)
T ss_dssp             ----------------TCSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHH-----HHH
T ss_pred             ----------------ECCceEEEEECCCCCCc--chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHH-----HHH
Confidence                            24568999999997632  1111222222221  1347999999999888776552     344


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~  302 (426)
                      ..+...++|+|||+||+|+......  +.                             ++  .++..++++||++|.|+.
T Consensus       125 ~~l~~~~~pvilV~NK~D~~~~~~~--~~-----------------------------e~~~lg~~~~~~iSA~~g~gv~  173 (456)
T 4dcu_A          125 KILYRTKKPVVLAVNKLDNTEMRAN--IY-----------------------------DFYSLGFGEPYPISGTHGLGLG  173 (456)
T ss_dssp             HHHTTCCSCEEEEEECC-----------C-----------------------------CSGGGSSSSEEECCTTTCTTHH
T ss_pred             HHHHHcCCCEEEEEECccchhhhhh--HH-----------------------------HHHHcCCCceEEeecccccchH
Confidence            5567789999999999998643210  00                             11  123467899999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          303 AYFKAVEESAQ  313 (426)
Q Consensus       303 ~l~~~l~~~~~  313 (426)
                      +|++++...++
T Consensus       174 ~L~~~i~~~l~  184 (456)
T 4dcu_A          174 DLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHTTGG
T ss_pred             HHHHHHHhhcc
Confidence            99999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.69  E-value=1.5e-16  Score=162.88  Aligned_cols=118  Identities=13%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh--hhHHHHHHHHhhccCC-eEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~--~~~l~~~~~l~~~~~P-~IlVlNK  240 (426)
                      .+.++.||||||+.++.      ..+...+  ..+|++|+|||+..+.....|.  ......+..+...++| +|+|+||
T Consensus        93 ~~~~~~iiDTPGh~~f~------~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK  164 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFV------PNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK  164 (439)
T ss_pred             CCeEEEEEECCChHHHH------HHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence            44689999999997752      2222222  3479999999999876421100  0113344455667888 8999999


Q ss_pred             CCCCChH----hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          241 TDVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       241 iDl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +|+....    ....+...+..+...              ++..   .....++|++||++|.|+.++.+
T Consensus       165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~--------------~g~~---~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          165 MDDPTVNWSNERYEECKEKLVPFLKK--------------VGFN---PKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHH--------------hccc---ccCCeeEEEeeccCCcccccccc
Confidence            9997532    122222223222111              1100   00246899999999999999765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.69  E-value=9.9e-17  Score=143.33  Aligned_cols=167  Identities=17%  Similarity=0.230  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+|+|++..+.....       |.+     +..+..                   ..+..   
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~~-----~~~~~~-------------------~~~~~---   54 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN-------HTI-----GVEFGS-------------------KIINV---   54 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------CCS-----EEEEEE-------------------EEEEE---
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Ccc-----ceEEEE-------------------EEEEE---
Confidence            45789999999999999999999876542110       000     000000                   00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .             .....+.||||||+.++.       .+... ....+|++++|+|+....+... ....+..+...
T Consensus        55 -~-------------~~~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~  111 (186)
T 2bme_A           55 -G-------------GKYVKLQIWDTAGQERFR-------SVTRS-YYRGAAGALLVYDITSRETYNA-LTNWLTDARML  111 (186)
T ss_dssp             -T-------------TEEEEEEEEEECCSGGGH-------HHHHT-TSTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred             -C-------------CEEEEEEEEeCCCcHHHH-------HHHHH-HHhcCCEEEEEEECcCHHHHHH-HHHHHHHHHHh
Confidence             0             122578999999987641       11111 1134799999999976332111 11111112223


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+++|+||+|+....... . .....+.                      . ....+++++||++|.|+.+++++
T Consensus       112 ~~~~~piilv~nK~Dl~~~~~~~-~-~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A          112 ASQNIVIILCGNKKDLDADREVT-F-LEASRFA----------------------Q-ENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             SCTTCEEEEEEECGGGGGGCCSC-H-HHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             cCCCCcEEEEEECcccccccccC-H-HHHHHHH----------------------H-HcCCEEEEecCCCCCCHHHHHHH
Confidence            34578999999999996532211 0 0111110                      0 12357999999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          308 VEESAQEFM  316 (426)
Q Consensus       308 l~~~~~~~~  316 (426)
                      |.+.+....
T Consensus       167 l~~~~~~~~  175 (186)
T 2bme_A          167 CARKILNKI  175 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998876643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.69  E-value=2.3e-16  Score=157.64  Aligned_cols=178  Identities=19%  Similarity=0.208  Sum_probs=98.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|++|||||||+|+|++....             +...+++|    ++.              ..+.+.     
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~-------------~~~~~~~T----~d~--------------~~~~i~-----  222 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQK-------------VDTKLFTT----MSP--------------KRYAIP-----  222 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC----------------------------CCS--------------CEEEEE-----
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCcccc----cCC--------------EEEEEE-----
Confidence            446999999999999999999987532             22233333    100              001111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCC-chhhhhhHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSAN-PMTFMSNMLYACSI  226 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~-~~~~~~~~l~~~~~  226 (426)
                                    ..+..+.++||||+....++..... +...+. ...+|++++|+|+++... ...........+..
T Consensus       223 --------------~~g~~v~l~DT~G~i~~lp~~lve~-f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~  287 (364)
T 2qtf_A          223 --------------INNRKIMLVDTVGFIRGIPPQIVDA-FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILRE  287 (364)
T ss_dssp             --------------ETTEEEEEEECCCBCSSCCGGGHHH-HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------ECCEEEEEEeCCCchhcCCHHHHHH-HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH
Confidence                          1235688999999855322221111 222222 245799999999876431 11111111222233


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +...++|+|+|+||+|+.+... .........+..                     .+ ....+++++||++|.|+++|+
T Consensus       288 l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~---------------------~l~~~~~~~~~~SA~~g~gi~~L~  345 (364)
T 2qtf_A          288 IGVSGKPILVTLNKIDKINGDL-YKKLDLVEKLSK---------------------ELYSPIFDVIPISALKRTNLELLR  345 (364)
T ss_dssp             HTCCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHH---------------------HHCSCEEEEEECBTTTTBSHHHHH
T ss_pred             hCcCCCCEEEEEECCCCCCchH-HHHHHHHHHHHH---------------------HhcCCCCcEEEEECCCCcCHHHHH
Confidence            3335789999999999987531 111111111111                     11 122358999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 014354          306 KAVEESAQEFMETY  319 (426)
Q Consensus       306 ~~l~~~~~~~~~~~  319 (426)
                      ++|.+.+....+++
T Consensus       346 ~~I~~~l~~~~~~~  359 (364)
T 2qtf_A          346 DKIYQLATQLSLEH  359 (364)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHhcccCCCC
Confidence            99999877655443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=1.3e-16  Score=145.04  Aligned_cols=172  Identities=19%  Similarity=0.205  Sum_probs=92.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+|+|++..+.....       +... ..+..                       ..+.  
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~--   71 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS-------ATLG-VDFQM-----------------------KTLI--   71 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEE-----------------------EEEE--
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCC-------CCcc-ceeEE-----------------------EEEE--
Confidence            4567899999999999999999999876432110       0000 00000                       0000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                        +             ......+.||||||+.++.      ......+.  .+|++|+|+|+......... ...+..+.
T Consensus        72 --~-------------~~~~~~l~i~Dt~G~~~~~------~~~~~~~~--~~d~iilv~d~~~~~s~~~~-~~~~~~i~  127 (199)
T 2p5s_A           72 --V-------------DGERTVLQLWDTAGQERFR------SIAKSYFR--KADGVLLLYDVTCEKSFLNI-REWVDMIE  127 (199)
T ss_dssp             --E-------------TTEEEEEEEEECTTCTTCH------HHHHHHHH--HCSEEEEEEETTCHHHHHTH-HHHHHHHH
T ss_pred             --E-------------CCEEEEEEEEECCCCcchh------hhHHHHHh--hCCEEEEEEECCChHHHHHH-HHHHHHHH
Confidence              0             0123578999999987652      11222222  36999999998754322111 11111112


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....++|+|||+||+|+.......... .+             .....+.++.    .+ ..+++++||++|.|+.+++
T Consensus       128 ~~~~~~~piilv~NK~Dl~~~~~~~~~~-~v-------------~~~~~~~~~~----~~-~~~~~~~SA~~g~gv~el~  188 (199)
T 2p5s_A          128 DAAHETVPIMLVGNKADIRDTAATEGQK-CV-------------PGHFGEKLAM----TY-GALFCETSAKDGSNIVEAV  188 (199)
T ss_dssp             HHC---CCEEEEEECGGGHHHHHHTTCC-CC-------------CHHHHHHHHH----HH-TCEEEECCTTTCTTHHHHH
T ss_pred             HhcCCCCCEEEEEECccccccccccccc-cc-------------CHHHHHHHHH----Hc-CCeEEEeeCCCCCCHHHHH
Confidence            2223478999999999986321100000 00             0000001111    11 3579999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      .+|.+.+.
T Consensus       189 ~~l~~~i~  196 (199)
T 2p5s_A          189 LHLAREVK  196 (199)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99987653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.68  E-value=2.6e-16  Score=146.16  Aligned_cols=166  Identities=15%  Similarity=0.208  Sum_probs=94.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||+++++...+.......       +       .++....                 ...    
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~T-------i-------g~d~~~k-----------------~~~----   56 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-------I-------GIDFLSK-----------------TMY----   56 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC------------------------CEEE-----------------EEE----
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCc-------c-------ceEEEEE-----------------EEE----
Confidence            4579999999999999999999987654322111       1       0000000                 000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       .            ....+.+.||||+|+.++..       +...+- ..++++++|.|.....+-.. ....+..+...
T Consensus        57 -~------------~~~~v~l~iwDtaGqe~~~~-------l~~~~~-~~a~~~ilv~di~~~~Sf~~-i~~~~~~i~~~  114 (216)
T 4dkx_A           57 -L------------EDRTIRLQLWDTAGLERFRS-------LIPSYI-RDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTE  114 (216)
T ss_dssp             -C------------SSCEEEEEEECCSCTTTCGG-------GHHHHH-TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred             -e------------cceEEEEEEEECCCchhhhh-------HHHHHh-ccccEEEEEeecchhHHHHH-HHHHHHHHHHh
Confidence             0            02336788999999988631       111111 34688899998864322111 00011111222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|||.||+|+...+.+.  .+....+              ++        .+ .++++.+||++|.||+++|..
T Consensus       115 ~~~~~piilVgNK~Dl~~~r~V~--~~e~~~~--------------a~--------~~-~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A          115 RGSDVIIMLVGNKTDLADKRQVS--IEEGERK--------------AK--------EL-NVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             HTTSSEEEEEEECTTCGGGCCSC--HHHHHHH--------------HH--------HH-TCEEEEEBTTTTBSHHHHHHH
T ss_pred             cCCCCeEEEEeeccchHhcCccc--HHHHhhH--------------HH--------Hh-CCeeEEEeCCCCcCHHHHHHH
Confidence            34578999999999987643211  0111111              11        11 256899999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |.+.++..
T Consensus       170 i~~~i~~~  177 (216)
T 4dkx_A          170 VAAALPGM  177 (216)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhh
Confidence            98876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.68  E-value=6.7e-17  Score=143.01  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+|+|++..+....             .+ +..++...                 ..+.    +
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~~-~~~~~~~~-----------------~~~~----~   58 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY-------------QA-TIGIDFLS-----------------KTMY----L   58 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-------------CC-CCSEEEEE-----------------EEEE----E
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------CC-ceeeEEEE-----------------EEEE----E
Confidence            478999999999999999999977543211             01 00000000                 0000    0


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .             .....+.||||||+.++..  ..    ...+  ..+|++++|+|+....+... ....+..+....
T Consensus        59 ~-------------~~~~~~~~~Dt~G~~~~~~--~~----~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~  116 (179)
T 2y8e_A           59 E-------------DRTVRLQLWDTAGQERFRS--LI----PSYI--RDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTER  116 (179)
T ss_dssp             T-------------TEEEEEEEEEECCSGGGGG--GS----HHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHH
T ss_pred             C-------------CeEEEEEEEECCCcHHHHH--HH----HHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhc
Confidence            0             1225789999999877521  11    1112  34799999999875321111 111111111122


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..++|+++|+||+|+........  .....+..                     .  ...+++++||++|.|+.+++++|
T Consensus       117 ~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A          117 GSDVIIMLVGNKTDLSDKRQVST--EEGERKAK---------------------E--LNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             TTSSEEEEEEECGGGGGGCCSCH--HHHHHHHH---------------------H--HTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             CCCCcEEEEEECCcccccCcCCH--HHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHHH
Confidence            35789999999999875432110  01110000                     0  13579999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.++
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            87553

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.68  E-value=1.6e-18  Score=160.33  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh--ccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~--~~~P~IlVlNKiD  242 (426)
                      ...+.||||||+..+....  ..    .+  ..++++++|+|+....+...    ...++..+..  .++|+|||+||+|
T Consensus        63 ~~~~~i~Dt~G~~~~~~~~--~~----~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~~~~~~~~~p~ilv~nK~D  130 (221)
T 3gj0_A           63 PIKFNVWDTAGQEKFGGLR--DG----YY--IQAQCAIIMFDVTSRVTYKN----VPNWHRDLVRVCENIPIVLCGNKVD  130 (221)
T ss_dssp             EEEEEEEEECSGGGTSCCC--HH----HH--TTCCEEEEEEETTCHHHHHT----HHHHHHHHHHHSTTCCEEEEEECTT
T ss_pred             EEEEEEEeCCChHHHhHHH--HH----HH--hcCCEEEEEEECCCHHHHHH----HHHHHHHHHHhCCCCCEEEEEECCc
Confidence            3678999999987652111  11    11  35799999999976432211    1112222222  3789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET  318 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~  318 (426)
                      +..........                  .+.+         ....+++++||++|.|+.+++.+|.+.+...++.
T Consensus       131 l~~~~~~~~~~------------------~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          131 IKDRKVKAKSI------------------VFHR---------KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL  179 (221)
T ss_dssp             SSSCSSCGGGC------------------CHHH---------HHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTTC
T ss_pred             cccccccHHHH------------------HHHH---------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCccc
Confidence            97643211000                  0000         1135799999999999999999999988775543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.68  E-value=1e-16  Score=140.38  Aligned_cols=161  Identities=17%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+|+|++........       |..........                       +..     
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~~~~~~~~-----------------------~~~-----   47 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE-------PTIGAAFLTQR-----------------------VTI-----   47 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCSSEEEEEEE-----------------------EEE-----
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------CccceeEEEEE-----------------------EEE-----
Confidence            3679999999999999999999876432110       10000000000                       000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .             .....+.||||||+.++..   .   ....+  ..+|++++|+|+....+...    ...++..+.
T Consensus        48 ~-------------~~~~~~~~~D~~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~~~  102 (170)
T 1ek0_A           48 N-------------EHTVKFEIWDTAGQERFAS---L---APXYY--RNAQAALVVYDVTKPQSFIK----ARHWVKELH  102 (170)
T ss_dssp             T-------------TEEEEEEEEEECCSGGGGG---G---HHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHH
T ss_pred             C-------------CEEEEEEEEECCCChhhhh---h---hhhhh--ccCcEEEEEEecCChHHHHH----HHHHHHHHH
Confidence            0             1235789999999876521   1   11122  35799999999975322111    111122222


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                         ..+.|+++|+||+|+........+ ......+                  +    .. ...+++++||++|.|+.++
T Consensus       103 ~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~------------------~----~~-~~~~~~~~Sa~~~~gi~~l  159 (170)
T 1ek0_A          103 EQASKDIIIALVGNKIDXLQEGGERKVAREEGEKL------------------A----EE-KGLLFFETSAKTGENVNDV  159 (170)
T ss_dssp             HHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH------------------H----HH-HTCEEEECCTTTCTTHHHH
T ss_pred             HhcCCCCcEEEEEECCCccccccccCCCHHHHHHH------------------H----HH-cCCEEEEEeCCCCCCHHHH
Confidence               347899999999998754110000 0001100                  0    00 1357999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      +++|.+.+
T Consensus       160 ~~~l~~~i  167 (170)
T 1ek0_A          160 FLGIGEKI  167 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHH
Confidence            99987643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.68  E-value=7.2e-17  Score=159.27  Aligned_cols=162  Identities=19%  Similarity=0.219  Sum_probs=95.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++..+|+|+|.+|||||||+++|++..+..              ..| +..+.                      ....
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--------------~~p-T~~~~----------------------~~~~  204 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVT--------------TIP-TIGFN----------------------VETV  204 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--------------EEE-ETTEE----------------------EEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCC--------------ccc-ccceE----------------------EEEE
Confidence            3456799999999999999999998865321              111 11000                      0000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .                ..+..+.||||||+..+..   .   ....+  ..+|++|+|+|+..........   ..+..
T Consensus       205 ~----------------~~~~~l~i~Dt~G~~~~~~---~---~~~~~--~~ad~vilV~D~~~~~s~~~~~---~~~~~  257 (329)
T 3o47_A          205 E----------------YKNISFTVWDVGGQDKIRP---L---WRHYF--QNTQGLIFVVDSNDRERVNEAR---EELMR  257 (329)
T ss_dssp             E----------------ETTEEEEEEECC-----CC---S---HHHHH--TTEEEEEEEEETTCSSSHHHHH---HHHHH
T ss_pred             e----------------cCcEEEEEEECCCCHhHHH---H---HHHHh--ccCCEEEEEEECCchHHHHHHH---HHHHH
Confidence            0                2346899999999876521   1   11112  3469999999997543322211   12222


Q ss_pred             HHhh---ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~~---~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .+..   .++|+|||+||+|+........+...+.                     ... ......+++++||++|.||+
T Consensus       258 ~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------LHS-LRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------CTT-CCSSCEEEEECBTTTTBTHH
T ss_pred             HHhhhccCCCeEEEEEECccCCcccCHHHHHHHhc---------------------hhh-hhcCCCEEEEEECCCCcCHH
Confidence            2332   3789999999999987543322322211                     000 00123579999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          303 AYFKAVEESAQ  313 (426)
Q Consensus       303 ~l~~~l~~~~~  313 (426)
                      +++++|.+.+.
T Consensus       316 el~~~l~~~l~  326 (329)
T 3o47_A          316 EGLDWLSNQLR  326 (329)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988664

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.68  E-value=4.1e-16  Score=138.08  Aligned_cols=163  Identities=18%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+....       .|.+       .++..                 ...+.    
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~-------~~t~-------~~~~~-----------------~~~~~----   49 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQY-------KQTI-------GLDFF-----------------LRRIT----   49 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHH-------HHTT-------TSSEE-----------------EEEEE----
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCC-------CCce-------eEEEE-----------------EEEEE----
Confidence            4578999999999999999999987643100       0000       00000                 00000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +.+            .....+.||||||+..+..   .   ....+  ..+|++++|+|+....+...    ...++..+
T Consensus        50 ~~~------------~~~~~~~~~Dt~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i  105 (178)
T 2hxs_A           50 LPG------------NLNVTLQIWDIGGQTIGGK---M---LDKYI--YGAQGVLLVYDITNYQSFEN----LEDWYTVV  105 (178)
T ss_dssp             ETT------------TEEEEEEEEECTTCCTTCT---T---HHHHH--TTCSEEEEEEETTCHHHHHT----HHHHHHHH
T ss_pred             eCC------------CCEEEEEEEECCCCccccc---h---hhHHH--hhCCEEEEEEECCCHHHHHH----HHHHHHHH
Confidence            000            0126889999999977521   1   11112  35799999999975332111    11112222


Q ss_pred             hh-----ccCC-eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          228 YK-----TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       228 ~~-----~~~P-~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      ..     ...| ++||+||+|+.......  .+....+..                     . + ..+++++||++|.|+
T Consensus       106 ~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi  160 (178)
T 2hxs_A          106 KKVSEESETQPLVALVGNKIDLEHMRTIK--PEKHLRFCQ---------------------E-N-GFSSHFVSAKTGDSV  160 (178)
T ss_dssp             HHHHHHHTCCCEEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H-H-TCEEEEECTTTCTTH
T ss_pred             HHHhcccCCCCeEEEEEEccccccccccC--HHHHHHHHH---------------------H-c-CCcEEEEeCCCCCCH
Confidence            22     2566 78999999987532110  011111110                     1 1 257999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      .+++.+|.+.+..
T Consensus       161 ~~l~~~l~~~~~~  173 (178)
T 2hxs_A          161 FLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.68  E-value=1.5e-16  Score=139.40  Aligned_cols=160  Identities=15%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++........       +..     +......                  .+..    
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~-----~~~~~~~------------------~~~~----   50 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE-------STI-----GAAFLTQ------------------TVCL----   50 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------CCS-----SEEEEEE------------------EEEE----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------Ccc-----ceEEEEE------------------EEEE----
Confidence            45789999999999999999999875432100       000     0000000                  0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++..   .   ....+  ..+|++++|+|+....+   +.. ...++..+
T Consensus        51 --------------~~~~~~~~~~D~~G~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~  104 (170)
T 1r2q_A           51 --------------DDTTVKFEIWDTAGQERYHS---L---APMYY--RGAQAAIVVYDITNEES---FAR-AKNWVKEL  104 (170)
T ss_dssp             --------------TTEEEEEEEEEECCSGGGGG---G---HHHHH--TTCSEEEEEEETTCHHH---HHH-HHHHHHHH
T ss_pred             --------------CCEEEEEEEEeCCCcHHhhh---h---hHHhc--cCCCEEEEEEECCCHHH---HHH-HHHHHHHH
Confidence                          01236789999999876521   1   11111  45799999999975422   111 11122222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|+++|+||+|+.......  ......+..                       ....+++++||++|.|+.++
T Consensus       105 ~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l  159 (170)
T 1r2q_A          105 QRQASPNIVIALSGNKADLANKRAVD--FQEAQSYAD-----------------------DNSLLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHH
T ss_pred             HHhcCCCCcEEEEEECccCccccccC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHH
Confidence            2   3478999999999986542210  011111100                       12357999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      +++|.+.+
T Consensus       160 ~~~i~~~~  167 (170)
T 1r2q_A          160 FMAIAKKL  167 (170)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHHH
Confidence            99998654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=2.3e-16  Score=160.12  Aligned_cols=115  Identities=21%  Similarity=0.291  Sum_probs=75.8

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ..+.||||||+.++.      .   .+.. ...+|++|+|||+..+. .++++.     .+..+...+ .|+|+|+||+|
T Consensus        83 ~~i~iiDtPGh~~f~------~---~~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~~~~~~iivviNK~D  148 (410)
T 1kk1_A           83 RRVSFIDAPGHEALM------T---TMLAGASLMDGAILVIAANEPCPRPQTRE-----HLMALQIIGQKNIIIAQNKIE  148 (410)
T ss_dssp             EEEEEEECSSHHHHH------H---HHHHCGGGCSEEEEEEETTSCSSCHHHHH-----HHHHHHHHTCCCEEEEEECGG
T ss_pred             cEEEEEECCChHHHH------H---HHHhhhhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEECcc
Confidence            578999999986641      1   1222 13579999999999876 454432     222233334 47899999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +..........+.+..+...                    .+....+++++||++|.|+.+|+++|...++.
T Consensus       149 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          149 LVDKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             GSCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            99876433333333221110                    11235789999999999999999999876653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=145.33  Aligned_cols=167  Identities=15%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+.....       |.+.... ..                       ..+.   
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-------~t~~~~~-~~-----------------------~~~~---   68 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN-------HTIGVEF-GS-----------------------RVVN---   68 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-------------------CCE-EE-----------------------EEEE---
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCC-------Cccccee-EE-----------------------EEEE---
Confidence            345799999999999999999999876432110       1000000 00                       0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       +.             .....+.||||||+.++...      ....+  ..+|++|+|+|+........ ....+..+..
T Consensus        69 -~~-------------~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~  125 (200)
T 2o52_A           69 -VG-------------GKTVKLQIWDTAGQERFRSV------TRSYY--RGAAGALLVYDITSRETYNS-LAAWLTDART  125 (200)
T ss_dssp             -ET-------------TEEEEEEEECCTTHHHHSCC------CHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHH
T ss_pred             -EC-------------CeeeEEEEEcCCCcHhHHHH------HHHHh--ccCCEEEEEEECcCHHHHHH-HHHHHHHHHH
Confidence             00             12257899999998664211      11111  34799999999976332111 1111111111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|++||+||+|+....... . .....+.                      . ....+++++||++|.|+.+++.
T Consensus       126 ~~~~~~piilv~nK~Dl~~~~~v~-~-~~~~~~~----------------------~-~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          126 LASPNIVVILCGNKKDLDPEREVT-F-LEASRFA----------------------Q-ENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             HTCTTCEEEEEEECGGGGGGCCSC-H-HHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred             hcCCCCcEEEEEECCCcccccccC-H-HHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence            223578999999999986543210 0 0111110                      0 1235799999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          307 AVEESAQEF  315 (426)
Q Consensus       307 ~l~~~~~~~  315 (426)
                      +|.+.+...
T Consensus       181 ~l~~~i~~~  189 (200)
T 2o52_A          181 KCARTILNK  189 (200)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.68  E-value=1.3e-16  Score=162.03  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhcc-CCeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~-~P~IlVlNKiD  242 (426)
                      ..+.||||||+.++.         ..+.. ...+|++|+|+|+..+. .++++.     .+..+...+ .|+|+|+||+|
T Consensus        81 ~~i~iiDtPGh~~f~---------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-----~l~~~~~l~~~~iivv~NK~D  146 (408)
T 1s0u_A           81 RRVSFVDSPGHETLM---------ATMLSGASLMDGAILVIAANEPCPQPQTKE-----HLMALEILGIDKIIIVQNKID  146 (408)
T ss_dssp             EEEEEEECSSHHHHH---------HHHHTTCSCCSEEEEEEETTSCSSCHHHHH-----HHHHHHHTTCCCEEEEEECTT
T ss_pred             cEEEEEECCCHHHHH---------HHHHHhHhhCCEEEEEEECCCCCCCchhHH-----HHHHHHHcCCCeEEEEEEccC
Confidence            578999999986641         11222 24579999999999876 454432     222233334 47999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +..........+.+..+...                    .+....++|++||++|.|+.+|+++|...++
T Consensus       147 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          147 LVDEKQAEENYEQIKEFVKG--------------------TIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             SSCTTTTTTHHHHHHHHHTT--------------------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHhh--------------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            98764322222222221110                    1123578999999999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.5e-16  Score=145.57  Aligned_cols=165  Identities=18%  Similarity=0.179  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+.....       |.+       .++...                 ..+.    
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-------~t~-------~~~~~~-----------------~~~~----   69 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG-------ATI-------GVDFMI-----------------KTVE----   69 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------CCC-------SEEEEE-----------------EEEE----
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCC-------Ccc-------ceeEEE-----------------EEEE----
Confidence            45799999999999999999999876432110       000       000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +             ......+.||||||+..+.       .+... ....+|++++|+|+....+... ....+..+...
T Consensus        70 ~-------------~~~~~~l~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~D~~~~~s~~~-~~~~~~~i~~~  127 (201)
T 2ew1_A           70 I-------------NGEKVKLQIWDTAGQERFR-------SITQS-YYRSANALILTYDITCEESFRC-LPEWLREIEQY  127 (201)
T ss_dssp             E-------------TTEEEEEEEEEECCSGGGH-------HHHGG-GSTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred             E-------------CCEEEEEEEEECCCcHHHH-------HHHHH-HHhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHh
Confidence            0             0123578999999986641       11111 1134799999999875332111 11111112222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|||+||+|+.....+.  ......+..                       ....+++++||++|.|+.+++.+
T Consensus       128 ~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          128 ASNKVITVLVGNKIDLAERREVS--QQRAEEFSE-----------------------AQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             SCTTCEEEEEEECGGGGGGCSSC--HHHHHHHHH-----------------------HHTCCEEECCTTTCTTHHHHHHH
T ss_pred             cCCCCCEEEEEECCCCccccccC--HHHHHHHHH-----------------------HcCCEEEEEeCCCCCCHHHHHHH
Confidence            23478999999999987543210  011111100                       01357999999999999999999


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      |...+..
T Consensus       183 l~~~i~~  189 (201)
T 2ew1_A          183 LACRLIS  189 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887765

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.67  E-value=1.2e-16  Score=153.52  Aligned_cols=119  Identities=13%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CCEEEEcCCCcccccc----hhchHHHH----HHHHHh-----------cCCcEEEEEEeCCC-CCCchhhhhhHHHHHH
Q 014354          166 LDYVLVDTPGQIEIFT----WSASGAII----TEAFAS-----------TFPTVVTYVVDTPR-SANPMTFMSNMLYACS  225 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~----~~~~~~~l----~~~~~~-----------~~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~  225 (426)
                      ..+.||||||+.+...    +......+    ..++..           ..+|+++|+|+... ++...+     ...+.
T Consensus        65 ~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-----~~~l~  139 (274)
T 3t5d_A           65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-----IEFMK  139 (274)
T ss_dssp             EEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-----HHHHH
T ss_pred             EEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-----HHHHH
Confidence            4789999999854311    22221111    122221           22568888886654 555444     22344


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+.. ++|+|+|+||+|+............+.....                       ....+++++||.+|.|+.+++
T Consensus       140 ~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~-----------------------~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          140 RLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ-----------------------EHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             HHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH-----------------------HTTCCCCCC-----------C
T ss_pred             HHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH-----------------------HcCCeEEcCCCCCChhHHHHH
Confidence            4444 8999999999999987655444333321111                       134678899999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ++|.+.+|
T Consensus       196 ~~l~~~~p  203 (274)
T 3t5d_A          196 KKIKDRLP  203 (274)
T ss_dssp             HHHHHTCS
T ss_pred             HHHhcCCC
Confidence            88876543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.67  E-value=9.2e-17  Score=143.30  Aligned_cols=163  Identities=18%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+++|++..+...             ..| +...+..                    ..... 
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-------------~~~-t~~~~~~--------------------~~~~~-   51 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST-------------FIS-TIGIDFK--------------------IRTIE-   51 (183)
T ss_dssp             EEEEEEEECCCCC----------------C-------------HHH-HHCEEEE--------------------EEEEE-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCC-------------CCC-cccceeE--------------------EEEEE-
Confidence            457899999999999999999997653211             001 0000000                    00000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +.             .....+.||||||+.++..       +... ....+|++++|+|+....   .+.. ...++..+
T Consensus        52 ~~-------------~~~~~~~l~Dt~G~~~~~~-------~~~~-~~~~~d~~i~v~d~~~~~---s~~~-~~~~~~~i  106 (183)
T 2fu5_C           52 LD-------------GKRIKLQIWDTAGQERFRT-------ITTA-YYRGAMGIMLVYDITNEK---SFDN-IRNWIRNI  106 (183)
T ss_dssp             ET-------------TEEEEEEEEEC----------------CCT-TTTTCSEEEEEEETTCHH---HHHH-HHHHHHHH
T ss_pred             EC-------------CEEEEEEEEcCCCChhhhh-------hHHH-HHhcCCEEEEEEECcCHH---HHHH-HHHHHHHH
Confidence            00             1236789999999866421       1000 013479999999997632   2111 11122222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|++||+||+|+.......  ......+..                     . + ..+++++||++|.|+.++
T Consensus       107 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~i~~l  161 (183)
T 2fu5_C          107 EEHASADVEKMILGNKCDVNDKRQVS--KERGEKLAL---------------------D-Y-GIKFMETSAKANINVENA  161 (183)
T ss_dssp             HHHSCTTCEEEEEEEC--CCSCCCSC--HHHHHHHHH---------------------H-H-TCEEEECCC---CCHHHH
T ss_pred             HHhcCCCCCEEEEEECccCCccCcCC--HHHHHHHHH---------------------H-c-CCeEEEEeCCCCCCHHHH
Confidence            2   2478999999999997643210  011111110                     1 1 257999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          305 FKAVEESAQEF  315 (426)
Q Consensus       305 ~~~l~~~~~~~  315 (426)
                      +.+|.+.+...
T Consensus       162 ~~~l~~~i~~~  172 (183)
T 2fu5_C          162 FFTLARDIKAK  172 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.49  E-value=4e-18  Score=155.51  Aligned_cols=173  Identities=15%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+++|++..+....              ..++    .+...              ..+.   
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~----~~~~~--------------~~~~---   72 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--------------IPTV----FDNYS--------------ANVM---   72 (204)
Confidence            46688999999999999999999876543211              0011    00000              0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    .......+.||||||+.++..      .....+  ..+|++++|+|+....+.....   ..+...
T Consensus        73 --------------~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~---~~~~~~  127 (204)
T 3th5_A           73 --------------VDGKPVNLGLWDTAGQEDYDR------LRPLSY--PQTDVFLICFSLVSPASFENVR---AKWYPE  127 (204)
Confidence                          002335778999999876521      111111  3468999999987644322211   011122


Q ss_pred             Hhhc--cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~~--~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +...  ++|+|+|+||+|+...............            ..+....+..+...++..+++++||++|.|++++
T Consensus       128 l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l  195 (204)
T 3th5_A          128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL------------TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  195 (204)
Confidence            2222  7899999999999865422111111000            0000000111111122237899999999999999


Q ss_pred             HHHHHHH
Q 014354          305 FKAVEES  311 (426)
Q Consensus       305 ~~~l~~~  311 (426)
                      +++|.+.
T Consensus       196 ~~~l~~~  202 (204)
T 3th5_A          196 FDEAIRA  202 (204)
Confidence            9998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.67  E-value=3.7e-16  Score=156.53  Aligned_cols=116  Identities=11%  Similarity=0.176  Sum_probs=78.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCe-EEEEe-cC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFN-KT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlN-Ki  241 (426)
                      .+..+.||||||+.++.      ..+...+  ..+|++|+||| ..+..+++     ...+..+...++|. |+|+| |+
T Consensus        58 ~~~~i~iiDtPGh~~f~------~~~~~~~--~~aD~ailVvd-~~g~~~qt-----~e~~~~~~~~~i~~~ivvvNNK~  123 (370)
T 2elf_A           58 EGRNMVFVDAHSYPKTL------KSLITAL--NISDIAVLCIP-PQGLDAHT-----GECIIALDLLGFKHGIIALTRSD  123 (370)
T ss_dssp             SSSEEEEEECTTTTTCH------HHHHHHH--HTCSEEEEEEC-TTCCCHHH-----HHHHHHHHHTTCCEEEEEECCGG
T ss_pred             CCeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEc-CCCCcHHH-----HHHHHHHHHcCCCeEEEEEEecc
Confidence            34679999999998762      2222222  45799999999 77766544     23344456678898 99999 99


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEE--eeccc---CCCHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVG--VSSVS---GAGIEAYFKAVEESAQE  314 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~--vSA~~---g~gv~~l~~~l~~~~~~  314 (426)
                      |+ .........+.+..+...              .      .+...++++  +||++   |.|+++|++.|.+.++.
T Consensus       124 Dl-~~~~~~~~~~~i~~~l~~--------------~------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          124 ST-HMHAIDELKAKLKVITSG--------------T------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             GS-CHHHHHHHHHHHHHHTTT--------------S------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHh--------------c------CCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            99 654333232333221110              0      113468999  99999   99999999999887765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.67  E-value=7e-17  Score=144.81  Aligned_cols=174  Identities=16%  Similarity=0.160  Sum_probs=95.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+++|++..+.....       |.+. ..++.                       .+...   
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~~---   51 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVF-ENYTA-----------------------SFEID---   51 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSE-EEEEE-----------------------EEECS---
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-------Cccc-eeEEE-----------------------EEEEC---
Confidence            45789999999999999999999876432110       1100 00000                       00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .....+.||||||+..+......        ....++++++|+|+....+   +......+...+
T Consensus        52 ---------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~i  105 (184)
T 1m7b_A           52 ---------------TQRIELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPET---LDSVLKKWKGEI  105 (184)
T ss_dssp             ---------------SCEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHH---HHHHHHTHHHHH
T ss_pred             ---------------CEEEEEEEEECCCChhhhhhHHh--------hcCCCcEEEEEEECCCHHH---HHHHHHHHHHHH
Confidence                           12357899999998765211110        1134799999999975322   211101111222


Q ss_pred             hh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHHH
Q 014354          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEAY  304 (426)
Q Consensus       228 ~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~l  304 (426)
                      ..  .+.|+|||+||+|+.......   ..+.   ..   .   ...+....+..+...++..+++++||+ +|.|+.++
T Consensus       106 ~~~~~~~piilv~nK~Dl~~~~~~~---~~~~---~~---~---~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l  173 (184)
T 1m7b_A          106 QEFCPNTKMLLVGCKSDLRTDVSTL---VELS---NH---R---QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI  173 (184)
T ss_dssp             HHHCTTCEEEEEEECGGGGGCHHHH---HHHH---TT---T---CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHH
T ss_pred             HHHCCCCCEEEEEEcchhhcchhhH---hhhh---hc---c---cCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHH
Confidence            22  478999999999997542110   0000   00   0   000000001111111234679999999 68999999


Q ss_pred             HHHHHHHHH
Q 014354          305 FKAVEESAQ  313 (426)
Q Consensus       305 ~~~l~~~~~  313 (426)
                      ++.|.+.+.
T Consensus       174 ~~~i~~~~l  182 (184)
T 1m7b_A          174 FHVATLACV  182 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987653

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.66  E-value=6.2e-17  Score=167.55  Aligned_cols=162  Identities=19%  Similarity=0.276  Sum_probs=103.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +++++|+|+|++|+|||||+++|++..+..+..             ++.| ++                   -+... ..
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~-------------~GIT-~~-------------------i~~~~-v~   47 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA-------------GGIT-QH-------------------IGAYH-VE   47 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB-------------CCCC-CC-------------------SSCCC-CC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccC-------------CCee-Ee-------------------EEEEE-EE
Confidence            367889999999999999999999875442211             1111 00                   00000 00


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.||||||+.++......+        ...+|++++|+|+..+..++++     ..+..
T Consensus        48 ----------------~~~~~i~~iDTPGhe~f~~~~~~~--------~~~aD~aILVVda~~g~~~qT~-----e~l~~   98 (501)
T 1zo1_I           48 ----------------TENGMITFLDTPGHAAFTSMRARG--------AQATDIVVLVVAADDGVMPQTI-----EAIQH   98 (501)
T ss_dssp             ----------------TTSSCCCEECCCTTTCCTTSBCSS--------SBSCSSEEEEEETTTBSCTTTH-----HHHHH
T ss_pred             ----------------ECCEEEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEeecccCccHHHH-----HHHHH
Confidence                            134578999999998874322111        1457999999999998877653     33445


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +...++|+|+|+||+|+...... ++...+.                  ......+.|....+++++||++|.|+.+|++
T Consensus        99 ~~~~~vPiIVviNKiDl~~~~~~-~v~~~l~------------------~~~~~~~~~~~~~~~v~vSAktG~gI~eLle  159 (501)
T 1zo1_I           99 AKAAQVPVVVAVNKIDKPEADPD-RVKNELS------------------QYGILPEEWGGESQFVHVSAKAGTGIDELLD  159 (501)
T ss_dssp             HHHTTCCEEEEEECSSSSTTCCC-CTTCCCC------------------CCCCCTTCCSSSCEEEECCTTTCTTCTTHHH
T ss_pred             HHhcCceEEEEEEeccccccCHH-HHHHHHH------------------HhhhhHHHhCCCccEEEEeeeeccCcchhhh
Confidence            56678999999999999753200 0100000                  0001111233347899999999999999999


Q ss_pred             HHHH
Q 014354          307 AVEE  310 (426)
Q Consensus       307 ~l~~  310 (426)
                      +|..
T Consensus       160 ~I~~  163 (501)
T 1zo1_I          160 AILL  163 (501)
T ss_dssp             HTTT
T ss_pred             hhhh
Confidence            9864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.66  E-value=5.5e-16  Score=160.66  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchh--hhhhHHHHHHHHhhccC-CeEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTRL-PLVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~--~~~~~l~~~~~l~~~~~-P~IlVlNK  240 (426)
                      .+..+.||||||+.++.      ..+...+  ..+|++|+|||+..+.....  ........+..+...+. |+|+|+||
T Consensus       109 ~~~~~~iiDTPG~~~f~------~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK  180 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFV------PNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK  180 (483)
T ss_dssp             SSCEEEEECCCCCGGGH------HHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CCceEEEEECCCcHHHH------HHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence            45789999999997752      2222222  45899999999988632211  11111233344445554 59999999


Q ss_pred             CCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       241 iDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +|+...  ....++...+..+...              ++.    .....++|++||++|.|+.++
T Consensus       181 ~Dl~~~~~~~~~~i~~~~~~~l~~--------------~g~----~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          181 MDNVDWSQQRFEEIKSKLLPYLVD--------------IGF----FEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHH--------------HTC----CGGGEEEEECCSSSCTTSSSS
T ss_pred             cCcccchHHHHHHHHHHHHHHHHH--------------cCC----CcccceEEEEeeecCCCcccc
Confidence            999873  2222333333322211              110    012467999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.66  E-value=2.4e-16  Score=142.07  Aligned_cols=161  Identities=14%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+|+|.+|||||||+++|++..+...              +..+........                 +..  
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~--------------~~~t~~~~~~~~-----------------~~~--   64 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISE--------------YDPNLEDTYSSE-----------------ETV--   64 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEEEEE-----------------EEE--
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcc--------------cCCCccceeeEE-----------------EEE--
Confidence            34567999999999999999999998764321              111110000000                 000  


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      ......+.||||||+..+..   .    ...+  ..++++++|+|.....   .+... ..++.
T Consensus        65 ----------------~~~~~~l~i~Dt~G~~~~~~---~----~~~~--~~~~~~ilv~d~~~~~---s~~~~-~~~~~  115 (187)
T 3c5c_A           65 ----------------DHQPVHLRVMDTADLDTPRN---C----ERYL--NWAHAFLVVYSVDSRQ---SFDSS-SSYLE  115 (187)
T ss_dssp             ----------------TTEEEEEEEEECCC---CCC---T----HHHH--TTCSEEEEEEETTCHH---HHHHH-HHHHH
T ss_pred             ----------------CCEEEEEEEEECCCCCcchh---H----HHHH--hhCCEEEEEEECCCHH---HHHHH-HHHHH
Confidence                            01335788999999977532   1    1222  3479999999987432   22111 11222


Q ss_pred             HHhh------ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeec-ccC
Q 014354          226 ILYK------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS-VSG  298 (426)
Q Consensus       226 ~l~~------~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA-~~g  298 (426)
                      .+..      .++|+|||+||+|+.......  ......+.              +       . + ..+++++|| ++|
T Consensus       116 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~--------------~-------~-~-~~~~~e~Sa~~~g  170 (187)
T 3c5c_A          116 LLALHAKETQRSIPALLLGNKLDMAQYRQVT--KAEGVALA--------------G-------R-F-GCLFFEVSACLDF  170 (187)
T ss_dssp             HHHHHHHHHCCCCCEEEEEECGGGGGGCSSC--HHHHHHHH--------------H-------H-H-TCEEEECCSSSCS
T ss_pred             HHHHHhhccCCCCCEEEEEECcchhhcCccC--HHHHHHHH--------------H-------H-c-CCcEEEEeecCcc
Confidence            2221      489999999999986532210  01111111              0       1 1 247999999 899


Q ss_pred             CCHHHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEESAQ  313 (426)
Q Consensus       299 ~gv~~l~~~l~~~~~  313 (426)
                      .|+.++++.|.+.+.
T Consensus       171 ~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          171 EHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHh
Confidence            999999999987653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.65  E-value=1.1e-16  Score=145.46  Aligned_cols=114  Identities=19%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh------ccCCeEEEE
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK------TRLPLVLAF  238 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~------~~~P~IlVl  238 (426)
                      ...+.||||||+.++.       .+... ....+|++++|+|+....+   +.. ...++..+..      .++|++||+
T Consensus        72 ~~~~~l~Dt~G~~~~~-------~~~~~-~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~i~~~~~~~~~~~piilv~  139 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYK-------EQISQ-YWNGVYYAILVFDVSSMES---FES-CKAWFELLKSARPDRERPLRAVLVA  139 (208)
T ss_dssp             EEEEEEEETTTTHHHH-------HHHST-TCCCCCEEEEEEETTCHHH---HHH-HHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred             EEEEEEEECCCcHHHH-------HHHHH-HHhhCcEEEEEEECCCHHH---HHH-HHHHHHHHHHhhcccccCCcEEEEE
Confidence            3578999999996541       11110 1134799999999975432   111 1122222222      578999999


Q ss_pred             ecCCCCC-hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-CCCHHHHHHHHHHHHHHH
Q 014354          239 NKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-GAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       239 NKiDl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~-g~gv~~l~~~l~~~~~~~  315 (426)
                      ||+|+.. .....  ......+..                     . + ..+++++||++ |.|+.+++++|.+.+.+.
T Consensus       140 nK~Dl~~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          140 NKTDLPPQRHQVR--LDMAQDWAT---------------------T-N-TLDFFDVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             ECC-------CCC--HHHHHHHHH---------------------H-T-TCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred             ECcccchhhccCC--HHHHHHHHH---------------------H-c-CCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence            9999976 32210  011111110                     1 1 25799999999 999999999999877653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.65  E-value=4.4e-16  Score=157.85  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      .+..+.||||||+.++.      ..+...+  ..+|++|+|+|+..+...++     ...+..+...++| +|+|+||+|
T Consensus        73 ~~~~~~iiDtpG~~~f~------~~~~~~~--~~aD~~ilVvda~~g~~~qt-----~~~l~~~~~~~ip~iivviNK~D  139 (405)
T 2c78_A           73 AKRHYSHVDCPGHADYI------KNMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKVD  139 (405)
T ss_dssp             SSCEEEEEECCCSGGGH------HHHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCEEEEEEECcc
Confidence            34789999999998752      2222222  45799999999998776544     2334445567899 789999999


Q ss_pred             CCCh-HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCH
Q 014354          243 VAQH-EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       243 l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv  301 (426)
                      +... .....+...+..+...              ++     + ....+++++||++|.|+
T Consensus       140 l~~~~~~~~~~~~~~~~~l~~--------------~~-----~~~~~~~~i~~SA~~g~~v  181 (405)
T 2c78_A          140 MVDDPELLDLVEMEVRDLLNQ--------------YE-----FPGDEVPVIRGSALLALEQ  181 (405)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHH--------------TT-----SCTTTSCEEECCHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHHH--------------hc-----ccccCCCEEEccHHHhhhh
Confidence            9853 2222222223222211              00     0 02368999999999873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.65  E-value=1.5e-16  Score=145.98  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+++|++..+.....       |.+. ..++.                       .+...  
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-------~t~~-~~~~~-----------------------~~~~~--   72 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVF-ENYTA-----------------------SFEID--   72 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSE-EEEEE-----------------------EEESS--
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-------Cccc-eeEEE-----------------------EEEEC--
Confidence            355799999999999999999999876542111       1000 00000                       00000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+..+.....       . ....++++|+|+|+....+   +......+...
T Consensus        73 ----------------~~~~~l~i~Dt~G~~~~~~~~~-------~-~~~~~d~~ilv~D~~~~~s---~~~~~~~~~~~  125 (205)
T 1gwn_A           73 ----------------TQRIELSLWDTSGSPYYDNVRP-------L-SYPDSDAVLICFDISRPET---LDSVLKKWKGE  125 (205)
T ss_dssp             ----------------SSEEEEEEEEECCSGGGTTTGG-------G-GCTTCSEEEEEEETTCHHH---HHHHHHTHHHH
T ss_pred             ----------------CEEEEEEEEeCCCcHhhhHHHH-------h-hccCCCEEEEEEECCCHHH---HHHHHHHHHHH
Confidence                            1235789999999876521110       0 1134799999999975322   21110111122


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecc-cCCCHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIEA  303 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~-~g~gv~~  303 (426)
                      +..  .++|+|||+||+|+........   .+.   ..   .   ...+....+..+...++..+++++||+ +|.|+.+
T Consensus       126 i~~~~~~~piilv~nK~Dl~~~~~~~~---~~~---~~---~---~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~  193 (205)
T 1gwn_A          126 IQEFCPNTKMLLVGCKSDLRTDVSTLV---ELS---NH---R---QTPVSYDQGANMAKQIGAATYIECSALQSENSVRD  193 (205)
T ss_dssp             HHHHCTTCEEEEEEECGGGGGCHHHHH---HHH---TT---T---CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred             HHHHCCCCCEEEEEechhhccchhhhh---hhc---cc---c---cCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHH
Confidence            222  4789999999999975321100   000   00   0   000000001111111234579999999 6899999


Q ss_pred             HHHHHHHHHH
Q 014354          304 YFKAVEESAQ  313 (426)
Q Consensus       304 l~~~l~~~~~  313 (426)
                      ++..|.+.+.
T Consensus       194 lf~~l~~~~l  203 (205)
T 1gwn_A          194 IFHVATLACV  203 (205)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=4.1e-16  Score=144.20  Aligned_cols=164  Identities=12%  Similarity=0.148  Sum_probs=91.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+|++++.....            +...+. +..+....                .+..   
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~------------~~~~~~-~g~d~~~~----------------~i~~---   82 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSM------------DSDCEV-LGEDTYER----------------TLMV---   82 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTT------------CCC----CCTTEEEE----------------EEEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------CCcCCc-cceeeEEE----------------EEEE---
Confidence            345789999999999999999999754321            111111 10000000                0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .             .....+++|||+|+...      ...+... ....++++|+|.|....   ..|... ..+...
T Consensus        83 --~-------------~~~~~l~~~Dt~g~~~~------~~~l~~~-~~~~a~~~ilVydvt~~---~sf~~~-~~~~~~  136 (211)
T 2g3y_A           83 --D-------------GESATIILLDMWENKGE------NEWLHDH-CMQVGDAYLIVYSITDR---ASFEKA-SELRIQ  136 (211)
T ss_dssp             --T-------------TEEEEEEEECCTTTTHH------HHHHHHC-CCCCCSEEEEEEETTCH---HHHHHH-HHHHHH
T ss_pred             --C-------------CeeeEEEEeecCCCcch------hhhHHHH-HHhhCCEEEEEEECCCH---HHHHHH-HHHHHH
Confidence              0             12356789999998552      0112111 11346788888887542   122111 111122


Q ss_pred             Hh----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          227 LY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      +.    ..++|+|||+||+|+.....+..  .....+                  +    ..+ ..+++++||++|.||.
T Consensus       137 l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~~~~------------------a----~~~-~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          137 LRRARQTEDIPIILVGNKSDLVRCREVSV--SEGRAC------------------A----VVF-DCKFIETSAAVQHNVK  191 (211)
T ss_dssp             HHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHHHHH------------------H----HHH-TCEEEECBTTTTBSHH
T ss_pred             HHHHhCCCCCcEEEEEEChHHhcCceEeH--HHHHHH------------------H----HHc-CCEEEEEeCCCCCCHH
Confidence            22    23789999999999975322110  000000                  0    011 2579999999999999


Q ss_pred             HHHHHHHHHHH
Q 014354          303 AYFKAVEESAQ  313 (426)
Q Consensus       303 ~l~~~l~~~~~  313 (426)
                      ++|++|.+.+.
T Consensus       192 elf~~l~~~i~  202 (211)
T 2g3y_A          192 ELFEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.9e-16  Score=145.53  Aligned_cols=162  Identities=17%  Similarity=0.192  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+++|++..+.....       |.+.. .+..    .                  .+..    
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-------~t~~~-~~~~----~------------------~~~~----   57 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-------STIGV-EFAT----R------------------TLEI----   57 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------CC-SEEE----E------------------EEEE----
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Ccccc-eeEE----E------------------EEEE----
Confidence            45789999999999999999999876542111       00000 0000    0                  0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.||||||+.++.....      ..  ...+|++|+|+|+........    ...++..+
T Consensus        58 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~--~~~~d~vilV~D~~~~~s~~~----~~~~l~~i  111 (223)
T 3cpj_B           58 --------------EGKRIKAQIWDTAGQERYRAITS------AY--YRGAVGALIVYDISKSSSYEN----CNHWLSEL  111 (223)
T ss_dssp             --------------TTEEEEEEEECCTTTTTTTCCCG------GG--TTTCCEEEEEEC-CCHHHHHH----HHHHHHHH
T ss_pred             --------------CCEEEEEEEEECCCccchhhhHH------HH--hccCCEEEEEEeCCCHHHHHH----HHHHHHHH
Confidence                          01225789999999876521110      00  134799999999875432211    11122222


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|++||+||+|+.......  ......+..                     .  ...+++++||++|.||.++
T Consensus       112 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B          112 RENADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQ---------------------E--NQLLFTETSALNSENVDKA  166 (223)
T ss_dssp             HHHCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCCC-CCCHHHH
T ss_pred             HHhCCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHH
Confidence            2   3478999999999987542210  001111100                     1  1357999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          305 FKAVEESAQE  314 (426)
Q Consensus       305 ~~~l~~~~~~  314 (426)
                      +.+|.+.+..
T Consensus       167 ~~~l~~~i~~  176 (223)
T 3cpj_B          167 FEELINTIYQ  176 (223)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.65  E-value=3.4e-16  Score=163.57  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=52.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+..+.||||||+.++.      ......+  ..+|++|+|+|+..+...++     ...+..+...++|+|+|+||+|+
T Consensus        80 ~~~~i~liDTPG~~df~------~~~~~~l--~~aD~allVvDa~~g~~~~t-----~~~~~~~~~~~iPiivviNK~Dl  146 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFT------EDTYRTL--TAVDSALMVIDAAKGVEPRT-----IKLMEVCRLRHTPIMTFINKMDR  146 (528)
T ss_dssp             TTEEEEEECCCCSTTCC------HHHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHHHTTTCCEEEEEECTTS
T ss_pred             CCEEEEEEECCCchhHH------HHHHHHH--HhCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEeCCCC
Confidence            45789999999998863      1122222  34799999999999877655     33445566778999999999999


Q ss_pred             CChH
Q 014354          244 AQHE  247 (426)
Q Consensus       244 ~~~~  247 (426)
                      ....
T Consensus       147 ~~~~  150 (528)
T 3tr5_A          147 DTRP  150 (528)
T ss_dssp             CCSC
T ss_pred             cccc
Confidence            7643

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.65  E-value=7.5e-16  Score=155.77  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=74.7

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      .+..+.||||||+.++.      ..+...  ...+|++|+|+|+..+...++.     ..+..+...++| +|+|+||+|
T Consensus        64 ~~~~~~iiDtpG~~~f~------~~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~vp~iivviNK~D  130 (397)
T 1d2e_A           64 AARHYAHTDCPGHADYV------KNMITG--TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKAD  130 (397)
T ss_dssp             SSCEEEEEECSSHHHHH------HHHHHT--SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred             CCeEEEEEECCChHHHH------HHHHhh--HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCeEEEEEECcc
Confidence            34789999999997641      111111  2458999999999988766542     233445567899 579999999


Q ss_pred             CCChH-hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCC----------HHHHHHHHHH
Q 014354          243 VAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAG----------IEAYFKAVEE  310 (426)
Q Consensus       243 l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~g----------v~~l~~~l~~  310 (426)
                      +.... ....+...+..+...              +     .+ ....+++++||++|.|          +.+|+++|..
T Consensus       131 l~~~~~~~~~~~~~~~~~l~~--------------~-----~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~  191 (397)
T 1d2e_A          131 AVQDSEMVELVELEIRELLTE--------------F-----GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (397)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHH--------------T-----TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHH--------------c-----CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence            98532 222222233322211              0     01 0136899999999774          7777777766


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      .++
T Consensus       192 ~~p  194 (397)
T 1d2e_A          192 YIP  194 (397)
T ss_dssp             HSC
T ss_pred             hCC
Confidence            554

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=5e-16  Score=155.25  Aligned_cols=159  Identities=15%  Similarity=0.170  Sum_probs=94.6

Q ss_pred             cChhhhHHHHHHhhhhccccc----ccCc--CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           33 ANDKEKEEITESMDKLHIEES----SSGL--AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        33 ~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      ++.+....|+..+.+++.+-.    ....  ..............|+|+|+||||||||+|+|++...            
T Consensus        30 ~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~------------   97 (376)
T 4a9a_A           30 ATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES------------   97 (376)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC------------
Confidence            344555667777776654311    1111  1112223344557899999999999999999999762            


Q ss_pred             ccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hch
Q 014354          107 PAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SAS  185 (426)
Q Consensus       107 ~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~  185 (426)
                       .+.++|++|    ++              |+-|++.                   ..+.+++|+||||+.+.... ..+
T Consensus        98 -~v~~~pftT----~~--------------~~~g~~~-------------------~~~~~i~l~D~pGl~~~a~~~~~~  139 (376)
T 4a9a_A           98 -EAAEYEFTT----LV--------------TVPGVIR-------------------YKGAKIQMLDLPGIIDGAKDGRGR  139 (376)
T ss_dssp             -CGGGTCSSC----CC--------------EEEEEEE-------------------ETTEEEEEEECGGGCCC-----CH
T ss_pred             -cccCCCCce----ee--------------eeeEEEE-------------------eCCcEEEEEeCCCccCCchhhhHH
Confidence             378889888    22              2345444                   25578999999999875221 123


Q ss_pred             HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       186 ~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      +..+....  ..+|++++|||++............+.... +.-...|.++++||+|..
T Consensus       140 g~~~l~~i--~~ad~il~vvD~~~p~~~~~~i~~EL~~~~-~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          140 GKQVIAVA--RTCNLLFIILDVNKPLHHKQIIEKELEGVG-IRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHHHH--HHCSEEEEEEETTSHHHHHHHHHHHHHHTT-EEETCCCCCEEEEECSSS
T ss_pred             HHHHHHHH--HhcCccccccccCccHHHHHHHHHHHHHhh-HhhccCChhhhhhHhhhh
Confidence            33333333  347999999999754332222211111110 112467899999999974

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=7.7e-16  Score=157.46  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=69.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiDl  243 (426)
                      +..+.||||||+.++.      ..+...+  ..+|++|+|+|+..+...++.     ..+..+...+.| +|+|+||+|+
T Consensus       103 ~~~~~iiDtpGh~~f~------~~~~~~~--~~aD~~ilVvDa~~g~~~qt~-----~~l~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          103 KRKFIIADTPGHEQYT------RNMATGA--STCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             SEEEEEEECCCSGGGH------HHHHHHH--TTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTTT
T ss_pred             CceEEEEECCChHHHH------HHHHHHH--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEEcCcC
Confidence            4679999999998752      2222222  568999999999988765442     223334455664 8999999999


Q ss_pred             CCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          244 AQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       244 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ...  +....+...+..+...              ++.    .....+++++||++|.|+.+++.
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~--------------~g~----~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEG--------------IAF----KPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHT--------------TTC----CCSEEEEEECCTTTCTTTSSCCT
T ss_pred             CcccHHHHHHHHHHHHHHHHH--------------hCC----CccCceEEEEeccCCCCcccccc
Confidence            863  2222233333322111              000    01236799999999999988643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.64  E-value=3.2e-16  Score=153.22  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+++|.+|||||||++++++..+....              ..++.....                  ..+.   
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~--------------~~t~~~~~~------------------~~~~---  197 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY--------------IPTVFDNYS------------------ANVM---  197 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC--------------CCCSEEEEE------------------EEEE---
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCccc--------------CCcccceeE------------------EEEE---
Confidence            35688999999999999999999987543211              111100000                  0000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        .            ....+.+.||||||+..+.....       . ....+|++++|+|+....+.....   ..+...
T Consensus       198 --~------------~~~~~~~~l~Dt~G~~~~~~~~~-------~-~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~  252 (332)
T 2wkq_A          198 --V------------DGKPVNLGLWDTAGLEDYDRLRP-------L-SYPQTDVFLICFSLVSPASFHHVR---AKWYPE  252 (332)
T ss_dssp             --E------------TTEEEEEEEEEECCCGGGTTTGG-------G-GCTTCSEEEEEEETTCHHHHHHHH---HTHHHH
T ss_pred             --E------------CCEEEEEEEEeCCCchhhhHHHH-------H-hccCCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence              0            01235677999999977521110       0 113479999999997643221111   011122


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +..  .++|+|+|+||+|+..............            ...+....+..+...++..+++++||++|.|+.++
T Consensus       253 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  320 (332)
T 2wkq_A          253 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  320 (332)
T ss_dssp             HHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HHhhCCCCcEEEEEEchhcccccchhhhccccc------------cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHH
Confidence            222  2899999999999876432211111000            00000011111112233347999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          305 FKAVEESAQ  313 (426)
Q Consensus       305 ~~~l~~~~~  313 (426)
                      +++|.+.+.
T Consensus       321 ~~~l~~~~~  329 (332)
T 2wkq_A          321 FDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-15  Score=162.03  Aligned_cols=110  Identities=19%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-------CchhhhhhHHHHHHHHhhccCC-eE
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LV  235 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-------~~~~~~~~~l~~~~~l~~~~~P-~I  235 (426)
                      .+.++.||||||+.++.      ..+..  ....+|++|+|||+..+.       ..++     ...+..+...++| +|
T Consensus       243 ~~~~~~iiDTPG~e~f~------~~~~~--~~~~aD~~llVVDa~~g~~e~~~~~~~qt-----~e~l~~~~~lgi~~iI  309 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFV------PNAIM--GISQADMAILCVDCSTNAFESGFDLDGQT-----KEHMLLASSLGIHNLI  309 (611)
T ss_dssp             SSCEEEEEECCSSSCHH------HHHTT--TSSCCSEEEEEEECSHHHHHTTCCTTSHH-----HHHHHHHHTTTCCEEE
T ss_pred             CCceEEEEECCCCcccH------HHHHH--HHhhcCceEEEEECCCCcccccchhhhHH-----HHHHHHHHHcCCCeEE
Confidence            45689999999997741      11111  124589999999998752       2222     2333445556655 89


Q ss_pred             EEEecCCCCCh--HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          236 LAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       236 lVlNKiDl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      ||+||+|+...  .....+...+..+...              ++.    .....++|++||++|.|+.++
T Consensus       310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~--------------~g~----~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVD--------------IGF----FEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEECTTTTTTCHHHHHHHHHHHHHHHHH--------------HTC----CGGGCEEEECCTTTCTTTSSC
T ss_pred             EEEecccccchhHHHHHHHHHHHHHHHHh--------------hcc----cccCccEEeeecccCCCcccc
Confidence            99999999873  2222233333222211              110    012468999999999999866

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.63  E-value=1.7e-16  Score=168.16  Aligned_cols=108  Identities=22%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC-------CchhhhhhHHHHHHHHhhccCC-eE
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LV  235 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~-------~~~~~~~~~l~~~~~l~~~~~P-~I  235 (426)
                      .+..+.||||||+.++......+.        ..+|++|+|||+..+.       ..++     ...+..+...++| +|
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~--------~~aD~alLVVDa~~g~~e~gi~~~~qt-----~e~l~~~~~lgip~iI  319 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGA--------SSADFAVLVVDSSQNNFERGFLENGQT-----REHAYLLRALGISEIV  319 (592)
T ss_dssp             ------CCEEESSSEEEEECCC---------------CCSEEEEEECCSSTTSCSCSSH-----HHHHHHHHHSSCCCEE
T ss_pred             CCeEEEEEECCChHHHHHHHHHHH--------hhCCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence            346899999999988743222221        3469999999998754       3333     3344455667887 88


Q ss_pred             EEEecCCCCC--hHhHHHHHHHHHHHH-HHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          236 LAFNKTDVAQ--HEFALEWMQDFEVFQ-AAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       236 lVlNKiDl~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      +|+||+|+..  ......+...+..+. ..              ++.    ....+++|++||++|.|+.
T Consensus       320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~--------------~g~----~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKM--------------VGF----KTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHTTT--------------SCC----CGGGEEEEEECSSSCSSSC
T ss_pred             EEEeccccccccHHHHHHHHHHHHHHHHHh--------------hCC----CccceEEEEEecccCcccc
Confidence            8999999986  333333333333211 00              000    0123579999999999998

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.62  E-value=1.4e-15  Score=160.60  Aligned_cols=112  Identities=18%  Similarity=0.248  Sum_probs=77.2

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.||||||+.++.      ..+...+  ..+|.+|+|||+..+...++.     ..+..+...++|.|+|+||+|+..
T Consensus        73 ~~inliDTPGh~dF~------~ev~r~l--~~aD~aILVVDa~~gv~~qt~-----~~~~~a~~~~ipiIvviNKiDl~~  139 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFS------YEVSRAL--AACEGALLLIDASQGIEAQTV-----ANFWKAVEQDLVIIPVINKIDLPS  139 (600)
T ss_dssp             EEEEEECCCCSGGGH------HHHHHHH--HTCSEEEEEEETTTBCCHHHH-----HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCcHhHH------HHHHHHH--HhCCEEEEEEECCCCccHHHH-----HHHHHHHHCCCCEEEEEeccCccc
Confidence            578899999998862      2222333  347999999999998876652     233344567899999999999986


Q ss_pred             hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .. ..+..+.+.   ..              ++      ....+++++||++|.|+.+|+++|.+.++.
T Consensus       140 a~-~~~v~~el~---~~--------------lg------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          140 AD-VDRVKKQIE---EV--------------LG------LDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             CC-HHHHHHHHH---HT--------------SC------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cC-HHHHHHHHH---Hh--------------hC------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            43 112222221   11              00      111358999999999999999999887764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.61  E-value=7.4e-15  Score=134.99  Aligned_cols=184  Identities=16%  Similarity=0.199  Sum_probs=96.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|++|||||||+++|++..+..           .+.....+.                         ...  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-----------~~~~~~~~~-------------------------~~~--   51 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-----------TVVSQEPLS-------------------------AAD--   51 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-----------BCCCSSCEE-------------------------ETT--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-----------eeeecCceE-------------------------EEE--
Confidence            456789999999999999999999876431           011111011                         000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCC-CCCCchhhhhhHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTP-RSANPMTFMSNMLYA  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~-~~~~~~~~~~~~l~~  223 (426)
                                      .....+.||||||+..+.      ..+...+..  ..++++|+|+|+. ..............+
T Consensus        52 ----------------~~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~  109 (218)
T 1nrj_B           52 ----------------YDGSGVTLVDFPGHVKLR------YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI  109 (218)
T ss_dssp             ----------------GGGSSCEEEECCCCGGGT------HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred             ----------------eeCceEEEEECCCcHHHH------HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence                            023689999999997752      112222222  2368999999998 222211111111111


Q ss_pred             HHHH---hhccCCeEEEEecCCCCChHhHHHHHHHHH----HHHHH-----hc-----cc----cchhhhHHHHhhhhHh
Q 014354          224 CSIL---YKTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQAA-----IS-----SD----HSYTSTLTNSLSLALD  282 (426)
Q Consensus       224 ~~~l---~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~----~l~~~-----~~-----~~----~~~~~~~~~~~~~~l~  282 (426)
                      +...   ...++|++||+||+|+........+...+.    .+...     +.     ..    ..+...+.+.....+.
T Consensus       110 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~  189 (218)
T 1nrj_B          110 LSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA  189 (218)
T ss_dssp             HHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGG
T ss_pred             HhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCcccc
Confidence            1111   225899999999999987644332322222    11110     00     00    0011111122222222


Q ss_pred             hhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          283 EFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       283 ~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                      .++..+.++..|+..+ ++.++++++.+.
T Consensus       190 ~~~~~v~~~~~s~~~~-~i~~~~~~~~~~  217 (218)
T 1nrj_B          190 NLEASVVAFEGSINKR-KISQWREWIDEK  217 (218)
T ss_dssp             GSSSCEEEEECBTTTT-BCHHHHHHHHHH
T ss_pred             ccCCceEEEeccccCC-cHHHHHHHHHhh
Confidence            3344456777777776 588888887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.61  E-value=9.6e-15  Score=133.33  Aligned_cols=175  Identities=11%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      ....++.+|+|+|++|||||||+|+|++.....           .+...++++..                    .+.+.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~-----------~~~~~~G~~~~--------------------~~~~~   69 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLA-----------RTSKTPGRTQL--------------------INLFE   69 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC------------------------CC--------------------EEEEE
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccc-----------cccCCCcccee--------------------eEEEE
Confidence            445677899999999999999999999875211           01111111100                    00000


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch----hchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhh
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~----~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                                         .. ..+.+|||||+......    ......+...+.. ..++.+++|+|+........   
T Consensus        70 -------------------~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---  126 (210)
T 1pui_A           70 -------------------VA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD---  126 (210)
T ss_dssp             -------------------EE-TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---
T ss_pred             -------------------ec-CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH---
Confidence                               01 26789999998642100    0111222233322 34688999999987654322   


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g  298 (426)
                        ..+...+...++|.++|+||+|+.+..........+..+.                     ........++++||+++
T Consensus       127 --~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~Sal~~  183 (210)
T 1pui_A          127 --QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV---------------------LAFNGDVQVETFSSLKK  183 (210)
T ss_dssp             --HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---------------------GGGCSCEEEEECBTTTT
T ss_pred             --HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---------------------HhcCCCCceEEEeecCC
Confidence              1122334567899999999999988653322112222111                     11112356899999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEESAQEF  315 (426)
Q Consensus       299 ~gv~~l~~~l~~~~~~~  315 (426)
                      .|+.+++++|.+...+.
T Consensus       184 ~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          184 QGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             BSHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            99999999998876553

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.61  E-value=4.3e-14  Score=152.39  Aligned_cols=123  Identities=12%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ..+.||||||+.+...   .......++  ..+|++|||+|+.......+.    ..+...+...+.|+++|+||+|+..
T Consensus       174 ~~l~LiDTPGl~~~~~---~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~----~~l~~~l~~~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEA---RNELSLGYV--NNCHAILFVMRASQPCTLGER----RYLENYIKGRGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             TTEEEEECCCHHHHHT---CHHHHTHHH--HSSSEEEEEEETTSTTCHHHH----HHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred             CCeEEEECCCCCchhh---HHHHHHHHH--HhCCEEEEEEeCCCccchhHH----HHHHHHHHhhCCCEEEEEECccccc
Confidence            4799999999876421   112222233  347999999999877655431    1112234456789999999999875


Q ss_pred             hH--------hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-------cCCceEEeecc--------------
Q 014354          246 HE--------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-------KNLKSVGVSSV--------------  296 (426)
Q Consensus       246 ~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~vv~vSA~--------------  296 (426)
                      ..        .+......+....                 ...+..+.       ...++++|||+              
T Consensus       245 ~~~~~~ee~e~l~~~~~~i~~~~-----------------~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~  307 (695)
T 2j69_A          245 ESLIDPDDVEELQASENRLRQVF-----------------NANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADL  307 (695)
T ss_dssp             GGCSSTTCHHHHHHHHHHHHHHH-----------------HHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCC
T ss_pred             ccccChhhHHHHHHHHHHHHHHH-----------------HHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhh
Confidence            43        1111111111100                 00011111       12479999999              


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 014354          297 SGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       297 ~g~gv~~l~~~l~~~~~~  314 (426)
                      +|.|+.+|+.+|...+..
T Consensus       308 ~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          308 DGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TTSSHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH
Confidence            999999999999887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.61  E-value=3.1e-15  Score=135.62  Aligned_cols=114  Identities=12%  Similarity=0.074  Sum_probs=63.0

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi  241 (426)
                      ..+++|||+|+.....  .+..   ..++  .++++++|.|.....   .|... ..+...+.    ..++|+|+|.||+
T Consensus        56 ~~l~~~Dt~~~~~~~~--~~~~---~~~~--~~~~~i~v~dv~~~~---s~~~~-~~~~~~l~~~~~~~~~piilV~NK~  124 (192)
T 2cjw_A           56 ATIILLDMWENKGENE--WLHD---HCMQ--VGDAYLIVYSITDRA---SFEKA-SELRIQLRRARQTEDIPIILVGNKS  124 (192)
T ss_dssp             EEEEEECCCCC----C--TTGG---GHHH--HCSEEEEEEETTCHH---HHHHH-HHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred             EEEEEEEeccCcchhh--hHHH---hhcc--cCCEEEEEEECCCHH---HHHHH-HHHHHHHHHhhCCCCCeEEEEEech
Confidence            5678999999865211  0100   0111  257777777775421   11111 11111121    2478999999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~  315 (426)
                      |+.......  ......+                  +    . ....+++++||++|.||.++|.+|.+.+...
T Consensus       125 Dl~~~r~v~--~~~~~~~------------------a----~-~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          125 DLVRXREVS--VSEGRAX------------------A----V-VFDXKFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             TCGGGCCSC--HHHHHHH------------------H----H-HTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhhcccccc--HHHHHHH------------------H----H-HhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence            986532210  0000000                  0    0 1125789999999999999999999877543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.61  E-value=2.2e-15  Score=159.30  Aligned_cols=113  Identities=18%  Similarity=0.285  Sum_probs=77.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+.+.||||||+.++.      ..+...++  .+|.+|+|+|+..+...++.     ..+..+...++|.|+|+||+|+.
T Consensus        70 ~~~l~liDTPGh~dF~------~ev~~~l~--~aD~aILVVDa~~gv~~qt~-----~~~~~~~~~~ipiIvViNKiDl~  136 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFS------YEVSRSLA--ACEGALLVVDAGQGVEAQTL-----ANCYTAMEMDLEVVPVLNKIDLP  136 (599)
T ss_dssp             EEEEEEEECCCCGGGH------HHHHHHHH--HCSEEEEEEETTTCCCTHHH-----HHHHHHHHTTCEEEEEEECTTST
T ss_pred             eEEEEEEECCCchHHH------HHHHHHHH--HCCEEEEEEECCCCCCHHHH-----HHHHHHHHCCCCEEEeeeccCcc
Confidence            3678899999998862      22333332  36999999999998877653     23333456789999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      .... .+..+.+.   ..              ++      ....+++++||++|.|+.+|+++|.+.++.
T Consensus       137 ~a~~-~~v~~ei~---~~--------------lg------~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          137 AADP-ERVAEEIE---DI--------------VG------IDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TCCH-HHHHHHHH---HH--------------TC------CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             cccH-HHHHHHHH---HH--------------hC------CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            6431 11222221   11              00      112368999999999999999999987764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.61  E-value=3.5e-16  Score=164.35  Aligned_cols=163  Identities=16%  Similarity=0.162  Sum_probs=84.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC---C------ceEEEeccCccccccccccccchhhhHHHHHHHHHcCC-C
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---N------IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL-G  136 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~---~------~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l-~  136 (426)
                      ...++|+|+|.+|||||||+|+|++..+..   +      ....+...+... ..+..+.+ ......+.. +..++. -
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-i~~g~~l~-~~~~~~~~~-L~~~g~~~  139 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-TVPGNALV-VDPEKPFRK-LNPFGNTF  139 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-EECCC--------------------CC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-ccCCceee-ecCcccHHH-Hhhhcccc
Confidence            356899999999999999999999987531   1      011111110000 00000000 000000000 111111 1


Q ss_pred             CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch---hc--hHHHHHHHHHhcCCcEEEEEEeCCCC-
Q 014354          137 PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SA--SGAIITEAFASTFPTVVTYVVDTPRS-  210 (426)
Q Consensus       137 ~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~---~~--~~~~l~~~~~~~~~d~vl~VVDa~~~-  210 (426)
                      .++|+||++.   ..+      .      .+++||||||+.+....   ..  ........+  ..+|++|+|+|+... 
T Consensus       140 ~~~~~~~~~~---~~l------l------~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~  202 (550)
T 2qpt_A          140 LNRFMCAQLP---NQV------L------ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLE  202 (550)
T ss_dssp             CTTEEEEECC---CHH------H------HHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCC
T ss_pred             cccceEEecc---ccc------c------CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCC
Confidence            2466776532   110      0      26899999999763110   00  111122222  347999999999763 


Q ss_pred             CCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHH
Q 014354          211 ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQ  254 (426)
Q Consensus       211 ~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~  254 (426)
                      .....     ..++..+...+.|+++|+||+|++....+.++..
T Consensus       203 ~~~~~-----~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~  241 (550)
T 2qpt_A          203 ISDEF-----SEAIGALRGHEDKIRVVLNKADMVETQQLMRVYG  241 (550)
T ss_dssp             CCHHH-----HHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHH
T ss_pred             CCHHH-----HHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHH
Confidence            33322     2344556667889999999999998775544433

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.60  E-value=4.3e-16  Score=158.40  Aligned_cols=165  Identities=23%  Similarity=0.251  Sum_probs=100.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ...++|+|+|++|+|||||+|+|++..+..            ++..++++ ++   .                 ....+.
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------~~~~~gtT-~d---~-----------------~~~~~~   78 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------VSDYAGTT-TD---P-----------------VYKSME   78 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CC---C-----------------CEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------cCCCCCee-ee---e-----------------EEEEEE
Confidence            456799999999999999999999876432            22222222 00   0                 000000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .               .....+.||||||+.++...... .......+  ..+|++|+|+|+  +.....     ..++.
T Consensus        79 ~---------------~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~-----~~~l~  134 (423)
T 3qq5_A           79 L---------------HPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYE-----DDVVN  134 (423)
T ss_dssp             E---------------TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHH-----HHHHH
T ss_pred             E---------------CCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHH-----HHHHH
Confidence            0               11127899999999876322111 12222222  358999999998  333222     33445


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+...++|+|+|+||+|+...... +..+.+                         ...+ ..+++++||++|.|+.+++
T Consensus       135 ~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l-------------------------~~~~-g~~v~~vSAktg~gI~eL~  187 (423)
T 3qq5_A          135 LFKEMEIPFVVVVNKIDVLGEKAE-ELKGLY-------------------------ESRY-EAKVLLVSALQKKGFDDIG  187 (423)
T ss_dssp             HHHHTTCCEEEECCCCTTTTCCCT-HHHHHS-------------------------SCCT-TCCCCCCSSCCTTSTTTHH
T ss_pred             HHHhcCCCEEEEEeCcCCCCccHH-HHHHHH-------------------------HHHc-CCCEEEEECCCCCCHHHHH
Confidence            566779999999999999876532 111111                         0112 3589999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+++.
T Consensus       188 ~~L~~~l~~~  197 (423)
T 3qq5_A          188 KTISEILPGD  197 (423)
T ss_dssp             HHHHHHSCCC
T ss_pred             HHHHHhhhhh
Confidence            9999988543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.60  E-value=5.3e-15  Score=144.46  Aligned_cols=169  Identities=16%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+|++++.....            ++..+.+| ++.                    ...... 
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------~~~~~~~T-i~~--------------------~~~~~~-   47 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF------------DTRRLGAT-IDV--------------------EHSHLR-   47 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTG------------GGGGCCCC-CSE--------------------EEEEEE-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCc------------cccCcCCc-cce--------------------EEEEEE-
Confidence            34689999999999999999999874321            22223222 110                    000000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH-HHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l-~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    ..++..+.||||||+..+.  ......+ ...+  ..+|++|+|+|+....+.... ......+..
T Consensus        48 --------------~~~~~~l~i~Dt~G~~~~~--~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~  108 (307)
T 3r7w_A           48 --------------FLGNMTLNLWDCGGQDVFM--ENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDI-EIFAKALKQ  108 (307)
T ss_dssp             --------------ETTTEEEEEEEECCSHHHH--HHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHH-HHHHHHHHH
T ss_pred             --------------eCCceEEEEEECCCcHHHh--hhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHH-HHHHHHHHH
Confidence                          0134689999999997641  0000001 1111  357999999999765432211 011111222


Q ss_pred             Hh--hccCCeEEEEecCCCCChHhHHHHH----HHHHHHHHHhccccchhhhHHHHhhhhHhhhhc--CCceEEeecccC
Q 014354          227 LY--KTRLPLVLAFNKTDVAQHEFALEWM----QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSG  298 (426)
Q Consensus       227 l~--~~~~P~IlVlNKiDl~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~vv~vSA~~g  298 (426)
                      +.  ..++|+++|+||+|+..........    .....+.                      ..++  ..+++++||++ 
T Consensus       109 l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~----------------------~~~g~~~~~~~~tSa~~-  165 (307)
T 3r7w_A          109 LRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS----------------------SEFGFPNLIGFPTSIWD-  165 (307)
T ss_dssp             HHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----------------------HTTTCCSCEEEECCTTS-
T ss_pred             HHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH----------------------HHcCCCCeEEEEeeecC-
Confidence            22  2379999999999999854332111    1111111                      1223  37899999999 


Q ss_pred             CCHHHHHHHHHHHH
Q 014354          299 AGIEAYFKAVEESA  312 (426)
Q Consensus       299 ~gv~~l~~~l~~~~  312 (426)
                      .|+.+++..+...+
T Consensus       166 ~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          166 ESLYKAWSQIVCSL  179 (307)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHH
Confidence            78888887776643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.59  E-value=3.6e-17  Score=148.75  Aligned_cols=161  Identities=14%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+...             ..+..+ .+..                 ...+..  
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~-~~~~-----------------~~~~~~--   77 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-------------YISTIG-VDFK-----------------IRTIEL--   77 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH-------------HHHHHC-CSEE-----------------EEEEEE--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------cCCccc-ceEE-----------------EEEEEE--
Confidence            3467999999999999999999997654321             001000 0000                 000000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.||||||+.++......      .  ...+|++++|+|+........    ...++..
T Consensus        78 ---------------~~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~~~----~~~~~~~  130 (199)
T 3l0i_B           78 ---------------DGKTIKLQIWDTAGQERFRTITSS------Y--YRGAHGIIVVYDVTDQESFNN----VKQWLQE  130 (199)
T ss_dssp             ---------------TTEEEEEEEECCTTCTTCCCCSCC----------CCCSEEEECC-CCCSHHHHH----HHHHHHH
T ss_pred             ---------------CCEEEEEEEEECCCcHhHHHHHHH------H--hhcCCEEEEEEECCCHHHHHH----HHHHHHH
Confidence                           012257899999998775321111      0  134799999999976332111    1122222


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      +.   ..++|+|||+||+|+........  .....              +.        . ....+++++||++|.|+.+
T Consensus       131 i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~--------------~~--------~-~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          131 IDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKE--------------FA--------D-SLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             HHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CH--------------HH--------H-TTTCCBCCCCC---HHHHH
T ss_pred             HHHhccCCCCEEEEEECccCCccccCCH--HHHHH--------------HH--------H-HcCCeEEEEECCCCCCHHH
Confidence            32   23789999999999975432100  00000              00        0 1135799999999999999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      ++++|.+.+
T Consensus       186 l~~~l~~~l  194 (199)
T 3l0i_B          186 SFMTMAAEI  194 (199)
T ss_dssp             HHHHHTTTT
T ss_pred             HHHHHHHHH
Confidence            999987654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.59  E-value=3.6e-15  Score=156.55  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.+.|+|+|+.++|||||..+|+.........+.|-.....    . .+..|      +.+.-++.|+.-....+.    
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~----~-~~~~D------~~~~EreRGITI~s~~~~----   94 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAA----R-HATSD------WMAMERERGISVTTSVMQ----   94 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTEEE----
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccc----c-ccccC------ChHHHHHCCCcEeeceEE----
Confidence            45789999999999999999998654222110000000000    0 00000      000111222222222111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                          +         .++++.+.||||||+.+|.      ..+.+.+  .-+|.+|+|||+..|+.+++     ...++.+
T Consensus        95 ----~---------~~~~~~iNlIDTPGHvDF~------~Ev~raL--~~~DgAvlVvda~~GV~~qT-----~~v~~~a  148 (548)
T 3vqt_A           95 ----F---------PYRDRVVNLLDTPGHQDFS------EDTYRVL--TAVDSALVVIDAAKGVEAQT-----RKLMDVC  148 (548)
T ss_dssp             ----E---------EETTEEEEEECCCCGGGCS------HHHHHHH--HSCSEEEEEEETTTBSCHHH-----HHHHHHH
T ss_pred             ----E---------EECCEEEEEEeCCCcHHHH------HHHHHHH--HhcCceEEEeecCCCccccc-----HHHHHHH
Confidence                1         1467899999999999983      2333334  34699999999999999988     4566778


Q ss_pred             hhccCCeEEEEecCCCCChH
Q 014354          228 YKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~  247 (426)
                      ...++|.|+++||+|+....
T Consensus       149 ~~~~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          149 RMRATPVMTFVNKMDREALH  168 (548)
T ss_dssp             HHTTCCEEEEEECTTSCCCC
T ss_pred             HHhCCceEEEEecccchhcc
Confidence            88999999999999998754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.59  E-value=2.4e-15  Score=160.77  Aligned_cols=134  Identities=19%  Similarity=0.233  Sum_probs=88.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|+.++|||||..+|+.........+.+....         +..|....      -++.|+.-....++ +   
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~---------~~~D~~~~------EreRGITI~s~~~~-~---   62 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT---------TRTDNTLL------ERQRGITIQTGITS-F---   62 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSC---------CSTTCSTT------HHHHSSCSSCCCCC-C---
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCC---------cccCCcHH------HHhCCCcEEeeeEE-E---
Confidence            45699999999999999999987654332221111111         11111100      01223332222221 1   


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   .++++.+.|||||||.+|.      ..+.+.+  ..+|.+|+|||+..|+.+++     ...++.+.
T Consensus        63 -------------~~~~~~iNlIDTPGH~DF~------~Ev~raL--~~~DgavlVVDa~~GV~~qT-----~~v~~~a~  116 (638)
T 3j25_A           63 -------------QWENTKVNIIDTPGHMDFL------AEVYRSL--SVLDGAILLISAKDGVQAQT-----RILFHALR  116 (638)
T ss_dssp             -------------BCSSCBCCCEECCCSSSTH------HHHHHHH--TTCSEEECCEESSCTTCSHH-----HHHHHHHH
T ss_pred             -------------EECCEEEEEEECCCcHHHH------HHHHHHH--HHhCEEEEEEeCCCCCcHHH-----HHHHHHHH
Confidence                         1467899999999999973      2333333  34799999999999999988     45677788


Q ss_pred             hccCCeEEEEecCCCCChH
Q 014354          229 KTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~  247 (426)
                      ..++|.|+++||+|+...+
T Consensus       117 ~~~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A          117 KMGIPTIFFINKIDQNGID  135 (638)
T ss_dssp             HHTCSCEECCEECCSSSCC
T ss_pred             HcCCCeEEEEeccccccCC
Confidence            8899999999999987653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.59  E-value=4.4e-15  Score=133.25  Aligned_cols=118  Identities=13%  Similarity=0.053  Sum_probs=67.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh--hccCCeEEEEecCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD  242 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~--~~~~P~IlVlNKiD  242 (426)
                      ...+.+|||||+.++....   .   ..+.  .++++++|+|.+.....  +. ....++..+.  ..+.|+|||+||+|
T Consensus        55 ~~~~~i~Dt~G~~~~~~~~---~---~~~~--~~~~~i~v~d~~~~~~s--~~-~~~~~~~~~~~~~~~~piilv~nK~D  123 (184)
T 2zej_A           55 DLVLNVWDFAGREEFYSTH---P---HFMT--QRALYLAVYDLSKGQAE--VD-AMKPWLFNIKARASSSPVILVGTHLD  123 (184)
T ss_dssp             -CEEEEEEECSHHHHHTTS---H---HHHH--HSEEEEEEEEGGGCHHH--HH-THHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred             ceEEEEEecCCCHHHHHhh---H---HHcc--CCcEEEEEEeCCcchhH--HH-HHHHHHHHHHhhCCCCcEEEEEECCC
Confidence            4688999999987652111   1   1111  25788899998654211  11 1111222222  13789999999999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC---CceEEeecccCC-CHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN---LKSVGVSSVSGA-GIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~vv~vSA~~g~-gv~~l~~~l~~~~~~  314 (426)
                      +..............   ..              ++    ..++.   .+++++||++|. |+.+|++.|.+.++.
T Consensus       124 l~~~~~~~~~~~~~~---~~--------------~~----~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          124 VSDEKQRKACMSKIT---KE--------------LL----NKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             GCCHHHHHHHHHHHH---HH--------------TT----TCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             cccchhhHHHHHHHH---HH--------------HH----HhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            987643221111110   00              00    11111   138999999997 999999999877654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.58  E-value=1.1e-14  Score=152.18  Aligned_cols=139  Identities=19%  Similarity=0.228  Sum_probs=76.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|++|||||||+++|++........+.+.+.++..     .+.   .+..         ......|+......
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~-----~~~---~D~~---------~~E~~rGiTi~~~~   74 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQ-----HAK---SDWM---------EMEKQRGISITTSV   74 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC------------------------------------------------CCTTE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCcccc-----cee---eccc---------hhcccCCcceeeeE
Confidence            457899999999999999999997543322222221111100     000   0000         00001121110000


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      .  .+         ...+..+.||||||+.++.      ..+...+  ..+|++|+|+|+..+...+.     ...+..+
T Consensus        75 ~--~~---------~~~~~~i~liDTPG~~df~------~~~~~~l--~~aD~~IlVvDa~~g~~~~t-----~~~~~~~  130 (529)
T 2h5e_A           75 M--QF---------PYHDCLVNLLDTPGHEDFS------EDTYRTL--TAVDCCLMVIDAAKGVEDRT-----RKLMEVT  130 (529)
T ss_dssp             E--EE---------EETTEEEEEECCCCSTTCC------HHHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHH
T ss_pred             E--EE---------EECCeEEEEEECCCChhHH------HHHHHHH--HHCCEEEEEEeCCccchHHH-----HHHHHHH
Confidence            0  00         0245789999999998762      1222222  34799999999998876543     3344555


Q ss_pred             hhccCCeEEEEecCCCCChH
Q 014354          228 YKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~  247 (426)
                      ...++|+|+|+||+|+....
T Consensus       131 ~~~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A          131 RLRDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             TTTTCCEEEEEECTTSCCSC
T ss_pred             HHcCCCEEEEEcCcCCcccc
Confidence            66789999999999998754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.58  E-value=5.6e-15  Score=154.94  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=92.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||+|+|++..+......       .+.....+...                  ++.+.+..  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~-------t~g~~~~~~~~------------------~~~~~v~~--   91 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ-------THGLNVVTKQA------------------PNIKGLEN--   91 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC------------------CCCEEEEEG------------------GGSGGGTT--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccceEEEEecc------------------ccccceee--
Confidence            3568999999999999999999998865422111       11000000000                  00000000  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                        ..           ......+.||||||+..+...   ...   .+  ..++++|+|+|++... ..      ..++..
T Consensus        92 --~~-----------~~~~~~~~i~Dt~G~e~~~~~---~~~---~l--~~~d~ii~V~D~s~~~-~~------~~~~~~  143 (535)
T 3dpu_A           92 --DD-----------ELKECLFHFWDFGGQEIMHAS---HQF---FM--TRSSVYMLLLDSRTDS-NK------HYWLRH  143 (535)
T ss_dssp             --CS-----------TTTTCEEEEECCCSCCTTTTT---CHH---HH--HSSEEEEEEECGGGGG-GH------HHHHHH
T ss_pred             --cC-----------CCceEEEEEEECCcHHHHHHH---HHH---Hc--cCCcEEEEEEeCCCch-hH------HHHHHH
Confidence              00           023578999999998775321   111   11  2479999999996541 11      223333


Q ss_pred             Hhh--ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l~~--~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +..  .+.|+|||+||+|+.......  ...+..+.                      .. ...+++++||++|.|+.++
T Consensus       144 l~~~~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~vSA~~g~gi~eL  198 (535)
T 3dpu_A          144 IEKYGGKSPVIVVMNKIDENPSYNIE--QKKINERF----------------------PA-IENRFHRISCKNGDGVESI  198 (535)
T ss_dssp             HHHHSSSCCEEEEECCTTTCTTCCCC--HHHHHHHC----------------------GG-GTTCEEECCC-----CTTH
T ss_pred             HHHhCCCCCEEEEEECCCcccccccC--HHHHHHHH----------------------Hh-cCCceEEEecCcccCHHHH
Confidence            333  359999999999998653211  01111100                      00 1246999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 014354          305 FKAVEESAQEFME  317 (426)
Q Consensus       305 ~~~l~~~~~~~~~  317 (426)
                      +.+|.+.+...+.
T Consensus       199 ~~~l~~~~~~~~~  211 (535)
T 3dpu_A          199 AKSLKSAVLHPDS  211 (535)
T ss_dssp             HHHHHHHHTCTTS
T ss_pred             HHHHHHHHhcccc
Confidence            9999998776544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.58  E-value=1.1e-14  Score=148.86  Aligned_cols=110  Identities=18%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCC-------CCchhhhhhHHHHHHHHhhccC-CeE
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLV  235 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~-------~~~~~~~~~~l~~~~~l~~~~~-P~I  235 (426)
                      .+..+.||||||+.++.      ..+...  ...+|++|+|+|+..+       ...+.     ...+..+...++ |+|
T Consensus        82 ~~~~~~iiDtpG~~~f~------~~~~~~--~~~aD~~ilVvDa~~gsfe~~~~~~~qt-----~~~~~~~~~~~~~~ii  148 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFV------KNMITG--ASQADAAILVVSAKKGEYEAGMSVEGQT-----REHIILAKTMGLDQLI  148 (435)
T ss_dssp             SSCEEEECCCSSSTTHH------HHHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHH-----HHHHHHHHHTTCTTCE
T ss_pred             CCeEEEEEECCCcHHHH------HHHHhh--hhhcCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence            45789999999998752      112111  2458999999999875       32222     333444455666 588


Q ss_pred             EEEecCCCCCh----HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHHH
Q 014354          236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       236 lVlNKiDl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +|+||+|+...    .........+..+...              ++     +. ...+++++||++|.|+.+++
T Consensus       149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~--------------~~-----~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRS--------------YG-----FNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHHHHHHHHH--------------TT-----CCCTTCEEEECBTTTTBTTTBCC
T ss_pred             EEEEcccCCCccccHHHHHHHHHHHHHHHHH--------------cC-----CCcCCceEEEeecccCccccccc
Confidence            99999999872    2222333333322211              00     00 13679999999999997554

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.9e-14  Score=136.60  Aligned_cols=88  Identities=22%  Similarity=0.241  Sum_probs=55.2

Q ss_pred             CcEEEEEEeCCCC--CCchhhhhhHHHHH-HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHH
Q 014354          198 PTVVTYVVDTPRS--ANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLT  274 (426)
Q Consensus       198 ~d~vl~VVDa~~~--~~~~~~~~~~l~~~-~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  274 (426)
                      +|++|+|+|++..  .+... ....+..+ ......++|+|||+||+|+.....+    .....+.              
T Consensus       163 ad~vilV~D~t~~~~~s~~~-~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~--------------  223 (255)
T 3c5h_A          163 VDGFLLGIDVSRGMNRNFDD-QLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFA--------------  223 (255)
T ss_dssp             CCEEEEEEECBC----CHHH-HHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHH--------------
T ss_pred             CCEEEEEEECCCCchhhHHH-HHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHH--------------
Confidence            7999999999764  22211 11111111 1112357999999999999765432    1221111              


Q ss_pred             HHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          275 NSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       275 ~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                              ......+++++||++|.|+.+++++|.+.+
T Consensus       224 --------~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          224 --------LSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             --------HTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --------HhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence                    011246799999999999999999998765

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.57  E-value=6.5e-15  Score=151.57  Aligned_cols=114  Identities=12%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhh--hhHHHHHHHHhhccCC-eEEEEec
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNK  240 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~--~~~l~~~~~l~~~~~P-~IlVlNK  240 (426)
                      .+.++.||||||+.++.      ..+...  ...+|++|+|||+..+..+..|.  ......+..+...++| +|+|+||
T Consensus        83 ~~~~~~iiDtPGh~~f~------~~~~~~--~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK  154 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFI------KNMITG--TSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK  154 (458)
T ss_dssp             SSEEEEEEECCCCTTHH------HHHHHS--SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCceEEEEECCCcHHHH------HHHHhh--hhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence            34689999999997652      111111  24589999999998654221110  0012233344556777 8899999


Q ss_pred             CCCCC--hHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhh-cCCceEEeecccCCCHHHH
Q 014354          241 TDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       241 iDl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~vv~vSA~~g~gv~~l  304 (426)
                      +|+..  ......+...+..+...              ++     +. ...+++++||++|.|+.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~--------------~g-----~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKK--------------VG-----YNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHH--------------HT-----CCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHH--------------cC-----CCccCceEEEeecccCcCcccc
Confidence            99984  33333333333322211              10     10 1368999999999999755

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.57  E-value=4e-14  Score=132.71  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|++|||||||+|+|++..........           ...+ .                    .+......
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~-----------~~~t-~--------------------~~~~~~~~   74 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA-----------KSIT-K--------------------KCEKRSSS   74 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------C-C--------------------SCEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC-----------Ccee-e--------------------eEEEEEEE
Confidence            35579999999999999999999998754211100           0011 0                    00000000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                                      ..+..+.||||||+.+.... ......+...+..  ..++++|+|+|+.+.......+  ...+
T Consensus        75 ----------------~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~--l~~~  136 (239)
T 3lxx_A           75 ----------------WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKA--TEKI  136 (239)
T ss_dssp             ----------------ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHH--HHHH
T ss_pred             ----------------eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHH--HHHH
Confidence                            23458899999998764211 1112233333332  2479999999987533221111  0111


Q ss_pred             HHHHh-hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc-----
Q 014354          224 CSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-----  297 (426)
Q Consensus       224 ~~~l~-~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~-----  297 (426)
                      ...+. ....|+|||+||+|+.....+.++......                 .+...+..+  ...++.+++..     
T Consensus       137 ~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~-----------------~l~~l~~~~--~~~~~~~~~~~~~~~~  197 (239)
T 3lxx_A          137 LKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-----------------DIQDLMDIF--GDRYCALNNKATGAEQ  197 (239)
T ss_dssp             HHHHHHHHGGGEEEEEECGGGC------------CH-----------------HHHHHHHHH--SSSEEECCTTCCHHHH
T ss_pred             HHHhhhhccceEEEEEeCCccCCcccHHHHHHhchH-----------------HHHHHHHHc--CCEEEEEECCCCcccc
Confidence            11111 245699999999999876543333221100                 001111122  23466666553     


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 014354          298 GAGIEAYFKAVEESAQE  314 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~  314 (426)
                      +.|+.+|+..+...+.+
T Consensus       198 ~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          198 EAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            36889999888887765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=1.3e-14  Score=134.15  Aligned_cols=182  Identities=17%  Similarity=0.198  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC----CCCCCccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT  143 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l----~~ng~i~~  143 (426)
                      +.++|+|+|++|||||||+++|+...+.. ..+.++..++..       +++   ...    +...+.    ..++|+|+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~-------~~d---~~~----~~~~~~~~~~~~~~~~~~  101 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA-------KFD---AER----MEKHGAKVVPLNTGKECH  101 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT-------HHH---HHH----HHTTTCEEEEEECTTCSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC-------Ccc---HHH----HHhcCCcEEEecCCceEe
Confidence            45789999999999999999999887654 555566555431       111   110    111110    01244433


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                       +.  ...+.+....+.  ..+++++++||+|......          .+. ...+.++.|+|+..+.......      
T Consensus       102 -l~--~~~~~~~~~~l~--~~~~d~~~id~~g~i~~~~----------s~~-~~~~~~~~v~~~~~~~~~~~~~------  159 (226)
T 2hf9_A          102 -LD--AHLVGHALEDLN--LDEIDLLFIENVGNLICPA----------DFD-LGTHKRIVVISTTEGDDTIEKH------  159 (226)
T ss_dssp             -CC--HHHHHHHHTTSC--GGGCSEEEEECCSCSSGGG----------GCC-CSCSEEEEEEEGGGCTTTTTTC------
T ss_pred             -cc--HHHHHHHHHHHh--cCCCCEEEEeCCCCccCcc----------hhh-hccCcEEEEEecCcchhhHhhh------
Confidence             11  111112111111  2346999999999633210          000 2245678888865433221110      


Q ss_pred             HHHHhhccCCeEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                         ....+.|.++|+||+|+....  ........+.                         .+....+++++||++|.|+
T Consensus       160 ---~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~g~gv  211 (226)
T 2hf9_A          160 ---PGIMKTADLIVINKIDLADAVGADIKKMENDAK-------------------------RINPDAEVVLLSLKTMEGF  211 (226)
T ss_dssp             ---HHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECCTTTCTTH
T ss_pred             ---hhHhhcCCEEEEeccccCchhHHHHHHHHHHHH-------------------------HhCCCCeEEEEEecCCCCH
Confidence               112468999999999986532  1111111111                         1223468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          302 EAYFKAVEESAQE  314 (426)
Q Consensus       302 ~~l~~~l~~~~~~  314 (426)
                      .+++++|.+.+..
T Consensus       212 ~~l~~~l~~~~~~  224 (226)
T 2hf9_A          212 DKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876643

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.56  E-value=1.9e-14  Score=159.41  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      .+..+.||||||+.++.      ..+..  ....+|++|+|||+..+...++     ...+..+...++| +|+|+||+|
T Consensus       357 ~~~kI~IIDTPGHedF~------~~mi~--gas~AD~aILVVDAtdGv~~QT-----rEhL~ll~~lgIP~IIVVINKiD  423 (1289)
T 3avx_A          357 PTRHYAHVDCPGHADYV------KNMIT--GAAQMDGAILVVAATDGPMPQT-----REHILLGRQVGVPYIIVFLNKCD  423 (1289)
T ss_dssp             SSCEEEEEECCCHHHHH------HHHHH--TSCCCSEEEEEEETTTCSCTTH-----HHHHHHHHHHTCSCEEEEEECCT
T ss_pred             CCEEEEEEECCChHHHH------HHHHH--HHhhCCEEEEEEcCCccCcHHH-----HHHHHHHHHcCCCeEEEEEeecc
Confidence            45789999999997751      11111  1245899999999999876655     2233445567899 689999999


Q ss_pred             CCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccC--------CCHHHHHHHHHHHH
Q 014354          243 VAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSG--------AGIEAYFKAVEESA  312 (426)
Q Consensus       243 l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g--------~gv~~l~~~l~~~~  312 (426)
                      +..... ...+...+..+...              ++     + ....+++++||++|        .|+.+|+++|...+
T Consensus       424 Lv~d~e~le~i~eEi~elLk~--------------~G-----~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          424 MVDDEELLELVEMEVRELLSQ--------------YD-----FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHH--------------TT-----SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cccchhhHHHHHHHHHHHHHh--------------cc-----ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            986332 22222333322211              00     1 12468999999999        45677777666544


Q ss_pred             H
Q 014354          313 Q  313 (426)
Q Consensus       313 ~  313 (426)
                      +
T Consensus       485 p  485 (1289)
T 3avx_A          485 P  485 (1289)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.56  E-value=3.3e-14  Score=153.26  Aligned_cols=70  Identities=17%  Similarity=0.231  Sum_probs=51.3

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+.++.||||||+.++.      ..+...+.  .+|++|+|+|+..+...++     ...+..+...++|.|+|+||+|+
T Consensus        73 ~~~~i~liDTPG~~df~------~~~~~~l~--~aD~~llVvDa~~g~~~~~-----~~~~~~~~~~~~p~ilviNK~Dl  139 (693)
T 2xex_A           73 EGHRVNIIDTPGHVDFT------VEVERSLR--VLDGAVTVLDAQSGVEPQT-----ETVWRQATTYGVPRIVFVNKMDK  139 (693)
T ss_dssp             TTEEEEEECCCCCSSCC------HHHHHHHH--HCSEEEEEEETTTBSCHHH-----HHHHHHHHHTTCCEEEEEECTTS
T ss_pred             CCeeEEEEECcCCcchH------HHHHHHHH--HCCEEEEEECCCCCCcHHH-----HHHHHHHHHcCCCEEEEEECCCc
Confidence            35789999999998763      12223332  3799999999998876654     23344456678999999999999


Q ss_pred             CCh
Q 014354          244 AQH  246 (426)
Q Consensus       244 ~~~  246 (426)
                      ...
T Consensus       140 ~~~  142 (693)
T 2xex_A          140 LGA  142 (693)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.56  E-value=3.6e-14  Score=143.86  Aligned_cols=170  Identities=22%  Similarity=0.329  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +....|+|+|+|||||||||++|++...             .+..+++++                  +.++.|.+..  
T Consensus       155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------------~i~~~~ftT------------------l~p~~G~V~~--  201 (416)
T 1udx_A          155 MLIADVGLVGYPNAGKSSLLAAMTRAHP-------------KIAPYPFTT------------------LSPNLGVVEV--  201 (416)
T ss_dssp             CCSCSEEEECCGGGCHHHHHHHHCSSCC-------------EECCCTTCS------------------SCCEEEEEEC--
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCCc-------------cccCcccce------------------ecceeeEEEe--
Confidence            4456799999999999999999998752             133344443                  1111222221  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                      .....+.++||||+.+.... ..+.....+.  ...++.+++|+|+.  ..+...++.....+.
T Consensus       202 ----------------~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--~era~~lL~vvDls--~~~~~~ls~g~~el~  261 (416)
T 1udx_A          202 ----------------SEEERFTLADIPGIIEGASEGKGLGLEFLRH--IARTRVLLYVLDAA--DEPLKTLETLRKEVG  261 (416)
T ss_dssp             ----------------SSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--HTSSSEEEEEEETT--SCHHHHHHHHHHHHH
T ss_pred             ----------------cCcceEEEEeccccccchhhhhhhhHHHHHH--HHHHHhhhEEeCCc--cCCHHHHHHHHHHHH
Confidence                            11257899999999763211 1122222221  24579999999996  222111111111111


Q ss_pred             HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .+.  -...|.|||+||+|+.....    ...+.....                       ....+++.+||+++.|+.+
T Consensus       262 ~la~aL~~~P~ILVlNKlDl~~~~~----~~~l~~~l~-----------------------~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          262 AYDPALLRRPSLVALNKVDLLEEEA----VKALADALA-----------------------REGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             HHCHHHHHSCEEEEEECCTTSCHHH----HHHHHHHHH-----------------------TTTSCEEECCTTTCTTHHH
T ss_pred             HHhHHhhcCCEEEEEECCChhhHHH----HHHHHHHHH-----------------------hcCCeEEEEECCCccCHHH
Confidence            111  24689999999999987622    112211110                       0135799999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          304 YFKAVEESAQEFM  316 (426)
Q Consensus       304 l~~~l~~~~~~~~  316 (426)
                      |+++|.+.+.+.+
T Consensus       315 L~~~i~~~l~~~~  327 (416)
T 1udx_A          315 LKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.55  E-value=4.7e-15  Score=153.01  Aligned_cols=111  Identities=19%  Similarity=0.268  Sum_probs=63.6

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHhhccCC-eEE
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLP-LVL  236 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~~~~~P-~Il  236 (426)
                      +..+.||||||+.++..      .+...  ...+|++|+|||+..+..       .++     +..+..+...++| +|+
T Consensus       120 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvDa~~g~~e~sf~~~~qt-----~e~l~~~~~~~vp~iiv  186 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVT------NMING--ASQADIGVLVISARRGEFEAGFERGGQT-----REHAVLARTQGINHLVV  186 (467)
T ss_dssp             SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCH-----HHHHHHHHHTTCSSEEE
T ss_pred             CeEEEEEECCCcHHHHH------HHHhh--cccCCEEEEEEeCCcCccccccCCCCcH-----HHHHHHHHHcCCCEEEE
Confidence            46799999999987521      11111  145899999999988741       222     2233445567888 899


Q ss_pred             EEecCCCCC----hHhHHHHHHHHHHHHHHhccccchhhhHHHHh-hhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          237 AFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSL-SLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       237 VlNKiDl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      |+||+|+..    .+....+...+..+...              + +..  . ....+++++||++|.|+.+++
T Consensus       187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~--------------~~g~~--~-~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          187 VINKMDEPSVQWSEERYKECVDKLSMFLRR--------------VAGYN--S-KTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             EEECTTSTTCSSCHHHHHHHHHHHHHHHHH--------------HHCCC--H-HHHEEEEECBTTTTBTTSSCC
T ss_pred             EEECccCCCccccHHHHHHHHHHHHHHHHH--------------hcCCC--c-cCCceEEeccccccccccccc
Confidence            999999964    22222233333322211              0 000  0 013579999999999998765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.55  E-value=4.8e-14  Score=140.55  Aligned_cols=159  Identities=12%  Similarity=0.080  Sum_probs=87.3

Q ss_pred             CCCEEEEcCCCcccccch---hchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEe
Q 014354          165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN  239 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~---~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlN  239 (426)
                      ..++.||||||+......   ......+.....  ...++++|+|+|+........   ..+..+..+...+.|+|+|+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEe
Confidence            468999999999875221   111222222221  145799999998754321111   123344445566889999999


Q ss_pred             cCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHHHHhhh
Q 014354          240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETY  319 (426)
Q Consensus       240 KiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~~~~~~  319 (426)
                      |+|+......  +...+..                    .   ......+++++|++++.|+.+.+..+.....+...+-
T Consensus       212 K~Dl~~~~~~--~~~~~~~--------------------~---~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~  266 (360)
T 3t34_A          212 KIDLMDKGTD--AVEILEG--------------------R---SFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFS  266 (360)
T ss_dssp             CGGGCCTTCC--SHHHHTT--------------------S---SSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHHHHHT
T ss_pred             CCccCCCccc--HHHHHcC--------------------c---cccccCCeEEEEECChHHhccCCCHHHHHHHHHHHhc
Confidence            9999875421  1111110                    0   1122357899999999999887766655555433221


Q ss_pred             hhHHHh---HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014354          320 KADLDK---RRAEKQRLEEERQKENINKLRKDMEK  351 (426)
Q Consensus       320 ~~~~~~---~~~~~~~~~e~~re~~~~~l~~e~~~  351 (426)
                      ....+.   .+-....+.+.+.+.+.+++.+.+|.
T Consensus       267 ~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~  301 (360)
T 3t34_A          267 NTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPG  301 (360)
T ss_dssp             TCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             CCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence            111111   11112334445555566667766653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.54  E-value=3.1e-14  Score=153.48  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+..+.||||||+.++.      ......+.  .+|++|+|+|+..+...++     ...+..+...++|.++|+||+|+
T Consensus        75 ~~~~i~liDTPG~~df~------~~~~~~l~--~aD~~ilVvDa~~g~~~~t-----~~~~~~~~~~~~p~ivviNKiD~  141 (691)
T 1dar_A           75 KDHRINIIDTPGHVDFT------IEVERSMR--VLDGAIVVFDSSQGVEPQS-----ETVWRQAEKYKVPRIAFANKMDK  141 (691)
T ss_dssp             TTEEEEEECCCSSTTCH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEECcCccchH------HHHHHHHH--HCCEEEEEEECCCCcchhh-----HHHHHHHHHcCCCEEEEEECCCc
Confidence            35789999999998752      22223332  3699999999998876654     22334456679999999999999


Q ss_pred             CChH
Q 014354          244 AQHE  247 (426)
Q Consensus       244 ~~~~  247 (426)
                      ....
T Consensus       142 ~~~~  145 (691)
T 1dar_A          142 TGAD  145 (691)
T ss_dssp             TTCC
T ss_pred             ccCC
Confidence            8643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.54  E-value=2.5e-14  Score=153.63  Aligned_cols=133  Identities=23%  Similarity=0.225  Sum_probs=78.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+|+|+|++|+|||||+++|++........+.|.+... +.        +.. ..   +  ...++    ++.....
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~-~~--------d~~-~~---e--~~~gi----ti~~~~~   67 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTT-TT--------DYT-PE---A--KLHRT----TVRTGVA   67 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCC-SS--------CCS-HH---H--HHTTS----CCSCEEE
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcc-cc--------cCC-HH---H--HhcCC----eEEecce
Confidence            46789999999999999999999976543211111110000 00        000 00   0  00111    1110000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      .+.             .....+.||||||+.++.      ..+...++  .+|.+++|+|+..+...+.     ...+..
T Consensus        68 ~~~-------------~~~~~~nliDTpG~~~f~------~~~~~~l~--~ad~~ilVvD~~~g~~~qt-----~~~~~~  121 (665)
T 2dy1_A           68 PLL-------------FRGHRVFLLDAPGYGDFV------GEIRGALE--AADAALVAVSAEAGVQVGT-----ERAWTV  121 (665)
T ss_dssp             EEE-------------ETTEEEEEEECCCSGGGH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHH
T ss_pred             EEe-------------eCCEEEEEEeCCCccchH------HHHHHHHh--hcCcEEEEEcCCcccchhH-----HHHHHH
Confidence            000             234688999999998752      22333332  3699999999998887654     234455


Q ss_pred             HhhccCCeEEEEecCCCC
Q 014354          227 LYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~  244 (426)
                      +...++|.|+|+||+|+.
T Consensus       122 ~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          122 AERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHTTCCEEEEEECGGGC
T ss_pred             HHHccCCEEEEecCCchh
Confidence            566789999999999997

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.53  E-value=5.5e-14  Score=127.65  Aligned_cols=162  Identities=16%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|++|||||||+++|++..+.....       |.+.. .+..                      +.+...    
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-------~t~~~-~~~~----------------------~~i~~~----   50 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGV-EFAT----------------------RSIQVD----   50 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC----------CCCSC-EEEE----------------------EEEEET----
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccce-eEEE----------------------EEEEEC----
Confidence            4689999999999999999999986532110       11000 0000                      000000    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                    .....+.||||||+..+..   ...   ..+  ..++++++|+|.........    ...++..+.
T Consensus        51 --------------g~~~~~~i~Dt~g~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~~~  104 (199)
T 2f9l_A           51 --------------GKTIKAQIWDTAGQERYRR---ITS---AYY--RGAVGALLVYDIAKHLTYEN----VERWLKELR  104 (199)
T ss_dssp             --------------TEEEEEEEEECSSGGGTTC---CCH---HHH--TTCSEEEEEEETTCHHHHHT----HHHHHHHHH
T ss_pred             --------------CEEEEEEEEECCCchhhhh---hhH---HHH--hcCCEEEEEEECcCHHHHHH----HHHHHHHHH
Confidence                          1225678999999876421   111   111  24689999999865332111    111112222


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ..+.|+++|+||+|+.......  ......+..                       .....++++||+++.|+.+++
T Consensus       105 ~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~~-----------------------~~~~~~~d~Sal~~~~i~~l~  159 (199)
T 2f9l_A          105 DHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFAE-----------------------KNNLSFIETSALDSTNVEEAF  159 (199)
T ss_dssp             HHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHH
T ss_pred             HhcCCCCeEEEEEECcccccccCcC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHHH
Confidence               2468999999999997532210  001111110                       123568999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ++|.+.+...
T Consensus       160 ~~l~~~~~~~  169 (199)
T 2f9l_A          160 KNILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.52  E-value=1.4e-13  Score=148.66  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+.+.||||||+.++.      ..+...+  ..+|.+|+|+|+..+...++     ...+..+...++|.++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df~------~~~~~~l--~~aD~aIlVvDa~~gv~~qt-----~~~~~~~~~~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFT------IEVERSM--RVLDGAVMVYCAVGGVQPQS-----ETVWRQANKYKVPRIAFVNKMDRM  147 (704)
T ss_pred             ceeEEEEeCCCccchH------HHHHHHH--HHCCEEEEEEeCCCCCcHHH-----HHHHHHHHHcCCCEEEEEeCCCcc
Confidence            4789999999998762      1222233  23699999999998876544     233444556789999999999998


Q ss_pred             ChH
Q 014354          245 QHE  247 (426)
Q Consensus       245 ~~~  247 (426)
                      ...
T Consensus       148 ~~~  150 (704)
T 2rdo_7          148 GAN  150 (704)
T ss_pred             ccc
Confidence            653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3e-13  Score=121.53  Aligned_cols=130  Identities=21%  Similarity=0.312  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+.++|+|+|++|||||||+|+|++.....    .+      .+..+..+                          ..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~~------~~~~~~~~--------------------------~~--   87 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TV------VSQEPLSA--------------------------AD--   87 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------------------------------C--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----cc------ccCCCcee--------------------------ee--
Confidence            356799999999999999999999876431    00      00001000                          00  


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.||||||+..+.  ......+...+  ..+|++|+|+|+...  ...+..........
T Consensus        88 ----------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~--~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~  145 (193)
T 2ged_A           88 ----------------YDGSGVTLVDFPGHVKLR--YKLSDYLKTRA--KFVKGLIFMVDSTVD--PKKLTTTAEFLVDI  145 (193)
T ss_dssp             ----------------CCCTTCSEEEETTCCBSS--CCHHHHHHHHG--GGEEEEEEEEETTCC--HHHHHHHHHHHHHH
T ss_pred             ----------------ecCCeEEEEECCCCchHH--HHHHHHHHhhc--ccCCEEEEEEECCCC--chhHHHHHHHHHHH
Confidence                            134688999999997752  11112121111  236899999999721  11211111111111


Q ss_pred             H------hhccCCeEEEEecCCCCChHhHHHHHHHH
Q 014354          227 L------YKTRLPLVLAFNKTDVAQHEFALEWMQDF  256 (426)
Q Consensus       227 l------~~~~~P~IlVlNKiDl~~~~~~~~~~~~~  256 (426)
                      +      ...++|+++|+||+|+........+.+.+
T Consensus       146 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          146 LSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             HhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            1      12479999999999998866544444444

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.48  E-value=1.9e-13  Score=147.80  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.|||||||.+|.      ..+...++  .+|.+|+|||+..|+..++     ...++.+.+.++|.|+|+||+|+.
T Consensus        84 ~~~iNlIDTPGHvDF~------~Ev~~aLr--~~DgavlvVDaveGV~~qT-----~~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFT------IEVERSLR--VLDGAVVVFCGTSGVEPQS-----ETVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCH------HHHHHHHH--HCSEEEEEEETTTCSCHHH-----HHHHHHHHHHTCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccH------HHHHHHHH--HhCeEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEcccccc
Confidence            4678999999999983      33444443  3699999999999999987     456777888899999999999997


Q ss_pred             ChH
Q 014354          245 QHE  247 (426)
Q Consensus       245 ~~~  247 (426)
                      ..+
T Consensus       151 ~a~  153 (709)
T 4fn5_A          151 GAN  153 (709)
T ss_dssp             TCC
T ss_pred             Ccc
Confidence            653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=7.4e-14  Score=139.38  Aligned_cols=119  Identities=14%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             CCEEEEcCCCccccc----chhchHHHHH----HHHHh-----------cCCcEEEEEEeC-CCCCCchhhhhhHHHHHH
Q 014354          166 LDYVLVDTPGQIEIF----TWSASGAIIT----EAFAS-----------TFPTVVTYVVDT-PRSANPMTFMSNMLYACS  225 (426)
Q Consensus       166 ~~~~liDTPGi~e~~----~~~~~~~~l~----~~~~~-----------~~~d~vl~VVDa-~~~~~~~~~~~~~l~~~~  225 (426)
                      ..+.||||||+.+..    .+......+.    .++..           ...+++||+|+. .+++...+.     .++.
T Consensus        95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-----~~~~  169 (361)
T 2qag_A           95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-----AFMK  169 (361)
T ss_dssp             EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-----HHHH
T ss_pred             cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-----HHHH
Confidence            468999999995431    1222222111    22222           124679999986 555554432     1222


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .+ ..++|+|+|+||+|+.....+..+...+..+.                      . ...++++++||++|.| .+.+
T Consensus       170 ~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~----------------------~-~~~i~~~~~Sa~~~~~-~e~~  224 (361)
T 2qag_A          170 AI-HNKVNIVPVIAKADTLTLKERERLKKRILDEI----------------------E-EHNIKIYHLPDAESDE-DEDF  224 (361)
T ss_dssp             HT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT----------------------T-CC-CCSCCCC----------C
T ss_pred             Hh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----------------------H-HCCCCEEeCCCcCCCc-chhH
Confidence            22 35789999999999998765433322222111                      0 1236799999999998 6666


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ..+...+..
T Consensus       225 ~~l~~~i~~  233 (361)
T 2qag_A          225 KEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666655444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.46  E-value=2.5e-13  Score=122.71  Aligned_cols=160  Identities=16%  Similarity=0.231  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|++|||||||+++|++..+.....       |.+.. .+..                      +.+...   
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-------~t~~~-~~~~----------------------~~i~~~---   74 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGV-EFAT----------------------RSIQVD---   74 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-------CCCSE-EEEE----------------------EEEEET---
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-------Cccce-EEEE----------------------EEEEEC---
Confidence            34789999999999999999999986542110       10000 0000                      000000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     .....+.+|||||+.++..  ..    ...+  ..++.+++|+|......   +. ....++..+
T Consensus        75 ---------------g~~~~~~i~Dt~g~~~~~~--~~----~~~~--~~~~~~i~v~d~~~~~s---~~-~~~~~~~~~  127 (191)
T 1oix_A           75 ---------------GKTIKAQIWDTAGLERYRA--IT----SAYY--RGAVGALLVYDIAKHLT---YE-NVERWLKEL  127 (191)
T ss_dssp             ---------------TEEEEEEEEEECSCCSSSC--CC----HHHH--TTCCEEEEEEETTCHHH---HH-THHHHHHHH
T ss_pred             ---------------CEEEEEEEEECCCCcchhh--hh----HHHh--hcCCEEEEEEECcCHHH---HH-HHHHHHHHH
Confidence                           1224567899999876421  11    1111  23578899999864321   11 111111212


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..+.|+++|+||+|+.......  ......+.                      . .....++++||+++.|+.++
T Consensus       128 ~~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          128 RDHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNGLSFIETSALDSTNVEAA  182 (191)
T ss_dssp             HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHH
T ss_pred             HHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence            2   3468999999999986532110  00111111                      0 12356889999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      ++.|.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.44  E-value=1.5e-12  Score=123.99  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=72.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++.....            +...+.++.                     ....+... 
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t~---------------------~~~~~~~~-   80 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------VSPFQAEGL---------------------RPVMVSRT-   80 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSC------------CCSSCC-CC---------------------CCEEEEEE-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcce---------------------eeEEEEEE-
Confidence            45789999999999999999999976432            222222220                     00000000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhch-HHHHHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~-~~~l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.||||||+.++...... ...+...+....+++++||++.... +....  ...+..+.
T Consensus        81 ---------------~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~--~~~~~~l~  143 (262)
T 3def_A           81 ---------------MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELD--KQVVIAIT  143 (262)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHH--HHHHHHHH
T ss_pred             ---------------ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHH--HHHHHHHH
Confidence                           23458999999999886322211 1222233333357899999776432 32221  11111111


Q ss_pred             HHh--hccCCeEEEEecCCCCCh
Q 014354          226 ILY--KTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~--~~~~P~IlVlNKiDl~~~  246 (426)
                      ...  ....|+++|+||+|+...
T Consensus       144 ~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          144 QTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHhchhhhcCEEEEEeCcccCCC
Confidence            111  123599999999999643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.40  E-value=2.3e-12  Score=123.11  Aligned_cols=126  Identities=15%  Similarity=0.220  Sum_probs=72.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+++|.+|+|||||+|+|++..+..            ++..+.++    +.                 ....... 
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t----~~-----------------~~~~~~~-   83 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEG----PR-----------------PVMVSRS-   83 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----SS-----------------CEEEEEE-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----ee-----------------eEEEEEe-
Confidence            45789999999999999999999876432            22222222    00                 0000000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc-hHHHHHHHHHhcCCcEEEEEEeCCC-CCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPR-SANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~-~~~~l~~~~~~~~~d~vl~VVDa~~-~~~~~~~~~~~l~~~~  225 (426)
                                     ..+..+.||||||+.++..... ....+...+....+|++|||+|... .+....     ..++.
T Consensus        84 ---------------~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~-----~~~~~  143 (270)
T 1h65_A           84 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-----KLVAK  143 (270)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-----HHHHH
T ss_pred             ---------------eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHH-----HHHHH
Confidence                           2346799999999987532111 1112222222234799999987643 232221     11222


Q ss_pred             HHhh-----ccCCeEEEEecCCCCChH
Q 014354          226 ILYK-----TRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       226 ~l~~-----~~~P~IlVlNKiDl~~~~  247 (426)
                      .+..     ...|+|+|+||+|+..+.
T Consensus       144 ~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          144 AITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHHHhCcccccCEEEEEECcccCCcC
Confidence            2221     226999999999998764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.40  E-value=8.1e-13  Score=129.35  Aligned_cols=124  Identities=15%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-hhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ..+.||||||+.++... ..  ....++  ..++++|+|+|++..... ..++...+..+.. ...++|++||+||+|+.
T Consensus        46 v~LqIWDTAGQErf~~~-~l--~~~~yy--r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~  119 (331)
T 3r7w_B           46 IDLAVMELPGQLNYFEP-SY--DSERLF--KSVGALVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGL  119 (331)
T ss_dssp             SCEEEEECCSCSSSCCC-SH--HHHHHH--TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSS
T ss_pred             EEEEEEECCCchhccch-hh--hhhhhc--cCCCEEEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccC
Confidence            68999999999987310 00  011223  347899999999875222 2233221211111 12478999999999998


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh---hcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF---YKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      .........+.+..                 +.+.-+...   ...++++.+||+. .+|.+.|..|...+.
T Consensus       120 ~~~~R~~~~R~V~~-----------------~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          120 SEDFKVDAQRDIMQ-----------------RTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             CSHHHHHHHHHHHH-----------------HHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred             chhhhhhHHHHhhH-----------------HHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence            76543222222221                 111111111   0246799999987 589999888876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.39  E-value=1.1e-12  Score=127.78  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=46.8

Q ss_pred             CcEEEEEEeCCC-CCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354          198 PTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (426)
Q Consensus       198 ~d~vl~VVDa~~-~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  276 (426)
                      ++++||+++.+. ++++...     ..+..+ ..+.|+++|+||+|+.....+....+.+..+..               
T Consensus       127 a~~ll~ldePt~~~Ld~~~~-----~~l~~l-~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~---------------  185 (301)
T 2qnr_A          127 VHCCFYFISPFGHGLKPLDV-----AFMKAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEIE---------------  185 (301)
T ss_dssp             CCEEEEEECSSSSSCCHHHH-----HHHHHH-TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH---------------
T ss_pred             hhheeeeecCcccCCCHHHH-----HHHHHH-HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH---------------
Confidence            455777777544 5776541     222222 235799999999999986543322222221111               


Q ss_pred             hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                             .+ .++++++||++| |+++++..+.+.+..
T Consensus       186 -------~~-~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          186 -------EH-NIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             -------HT-TCCCCCCC----------CHHHHHHHHT
T ss_pred             -------Hc-CCeEEecCCccc-cccHHHHHHHHHhhc
Confidence                   12 367899999999 999999988877654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.39  E-value=1.4e-12  Score=135.16  Aligned_cols=209  Identities=20%  Similarity=0.218  Sum_probs=111.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+|+|+|++|||||||+++|+......+.++.++..|+.-   +..     .+..  .....+.++...+. .++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r---~aa-----~~qL--~~~~~~~~i~v~~~-~~~~d  167 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR---AGA-----FDQL--KQNATKARIPFYGS-YTEMD  167 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS---SHH-----HHHH--HHHHHHHTCCEEEC-CCCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc---hhH-----HHHH--HHHhhccCceEEcc-CCCCC
Confidence            4567999999999999999999998876667888888887521   100     0000  01111222211000 00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                       ...-...  .+......+++++||||||.....  ..+...+........+|.+++|||+..+.....       .+..
T Consensus       168 -p~~i~~~--al~~~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~-------~a~~  235 (504)
T 2j37_W          168 -PVIIASE--GVEKFKNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-------QAKA  235 (504)
T ss_dssp             -HHHHHHH--HHHHHHHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH-------HHHH
T ss_pred             -HHHHHHH--HHHHHHHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEeccccccHHH-------HHHH
Confidence             0000011  112222367999999999986531  111122222222236899999999988754211       1222


Q ss_pred             HhhccCCe-EEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHH
Q 014354          227 LYKTRLPL-VLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEA  303 (426)
Q Consensus       227 l~~~~~P~-IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~  303 (426)
                      +.. .+|+ ++|+||+|...... ...+...+.       ..-.|.. .    +.-+..+..+.+.+++|++.|.| +..
T Consensus       236 ~~~-~~~i~gvVlNK~D~~~~~g~~l~~~~~~g-------~PI~fig-~----ge~~~dl~~f~~~~~vsal~G~Gdi~~  302 (504)
T 2j37_W          236 FKD-KVDVASVIVTKLDGHAKGGGALSAVAATK-------SPIIFIG-T----GEHIDDFEPFKTQPFISKLLGMGDIEG  302 (504)
T ss_dssp             HHH-HHCCCCEEEECTTSCCCCTHHHHHHHHHC-------CCEEEEE-C----SSSTTCEECCTHHHHHHCCCTTTTTTT
T ss_pred             HHh-hcCceEEEEeCCccccchHHHHHHHHHhC-------CCeEEec-c----ccchhhhhccCcceeeehhcCCCcHHH
Confidence            222 2674 89999999886432 112211110       0000000 0    00011223455677899999999 999


Q ss_pred             HHHHHHHH
Q 014354          304 YFKAVEES  311 (426)
Q Consensus       304 l~~~l~~~  311 (426)
                      |++++.+.
T Consensus       303 Lie~i~e~  310 (504)
T 2j37_W          303 LIDKVNEL  310 (504)
T ss_dssp             THHHHTTT
T ss_pred             HHHHHHHH
Confidence            99998766

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.36  E-value=7.6e-12  Score=126.56  Aligned_cols=199  Identities=12%  Similarity=0.004  Sum_probs=111.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+.+++|+|++|||||||+|.|+|...+..+.+.+.+.+        ++    +                 .+++...  
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~--------~t----~-----------------~~~v~q~--  116 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE--------VT----M-----------------ERHPYKH--  116 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-----------------CCEEEEC--
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee--------cc----e-----------------eEEeccc--
Confidence            456899999999999999999999766554432211100        00    0                 0111110  


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                     ....++.++|+||+...  . ..-..+.+.+.....+..++ ++..+ ...+     ++.+...+
T Consensus       117 ---------------~~~~~ltv~D~~g~~~~--~-~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kq-----rv~la~aL  171 (413)
T 1tq4_A          117 ---------------PNIPNVVFWDLPGIGST--N-FPPDTYLEKMKFYEYDFFII-ISATR-FKKN-----DIDIAKAI  171 (413)
T ss_dssp             ---------------SSCTTEEEEECCCGGGS--S-CCHHHHHHHTTGGGCSEEEE-EESSC-CCHH-----HHHHHHHH
T ss_pred             ---------------cccCCeeehHhhcccch--H-HHHHHHHHHcCCCccCCeEE-eCCCC-ccHH-----HHHHHHHH
Confidence                           01247899999998542  1 11122233322222345444 66644 1222     24455556


Q ss_pred             hhccCCeEEEEecCCCCCh---------HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeec--
Q 014354          228 YKTRLPLVLAFNKTDVAQH---------EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSS--  295 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA--  295 (426)
                      ...+.|+++|+||.|+.--         .....+.+.+..+..                 ..+.+. ..+..+|++|+  
T Consensus       172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~-----------------~~l~~~g~~~~~iiliSsh~  234 (413)
T 1tq4_A          172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV-----------------NTFRENGIAEPPIFLLSNKN  234 (413)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH-----------------HHHHHTTCSSCCEEECCTTC
T ss_pred             HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH-----------------HHHHhcCCCCCcEEEEecCc
Confidence            6778999999999986521         111222222222110                 000111 23457899999  


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhhhHH------HhHHHHHHHHHHHHHH
Q 014354          296 VSGAGIEAYFKAVEESAQEFMETYKADL------DKRRAEKQRLEEERQK  339 (426)
Q Consensus       296 ~~g~gv~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~e~~re  339 (426)
                      +.+.|++.|.+.+.+.+|+.+++|+-..      .+....+...++.+|+
T Consensus       235 l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~  284 (413)
T 1tq4_A          235 VCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWL  284 (413)
T ss_dssp             TTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            6777899999999999999988885222      2233444445555554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.36  E-value=3.8e-12  Score=129.07  Aligned_cols=85  Identities=9%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             CcEEEEEEeCC-CCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354          198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (426)
Q Consensus       198 ~d~vl~VVDa~-~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  276 (426)
                      ++++||+++++ +++.+.+.     .++..+. .++|+|+|+||+|+.....+..+...+.....               
T Consensus       139 ~~vlL~ldePt~~~L~~~d~-----~~lk~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~---------------  197 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDI-----EFMKRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ---------------  197 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHH-----HHHHHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH---------------
T ss_pred             eeEEEEEecCcccCCCHHHH-----HHHHHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH---------------
Confidence            45688888776 67776551     2233333 37899999999999987655444333332211               


Q ss_pred             hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                              ..+++++.+||.++.++..++..+...
T Consensus       198 --------~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          198 --------EHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             --------HHTCCCCCCC-----------------
T ss_pred             --------HcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence                    124678889999999999887777553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.33  E-value=2.4e-13  Score=138.54  Aligned_cols=240  Identities=16%  Similarity=0.171  Sum_probs=125.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+|+|++||||||++++|.+.....+.++.++..|+.-..     .+   +.  +..+....++....+..++.+ 
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~-----a~---~q--L~~~~~~~gv~v~~~~~~~~d-  166 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA-----AY---EQ--LKQLAEKIHVPIYGDETRTKS-  166 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT-----GG---GS--SHHHHHHSSCCEECCSSSCCS-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch-----HH---HH--HHHhhhccCcceEecCCCCCC-
Confidence            45689999999999999999999988777889999988863210     01   00  111222333221110001000 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      -..-...   .+.. ..+++++||||||....  ...+...+........+|.+++|+|+..+.+.       ...+..+
T Consensus       167 p~~i~~~---~l~~-~~~~D~vIIDT~G~~~~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~-------~~~~~~~  233 (432)
T 2v3c_C          167 PVDIVKE---GMEK-FKKADVLIIDTAGRHKE--EKGLLEEMKQIKEITNPDEIILVIDGTIGQQA-------GIQAKAF  233 (432)
T ss_dssp             SSTTHHH---HHHT-TSSCSEEEEECCCSCSS--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH-------HHHHHHH
T ss_pred             HHHHHHH---HHHH-hhCCCEEEEcCCCCccc--cHHHHHHHHHHHHHhcCcceeEEeeccccHHH-------HHHHHHH
Confidence            0001111   1111 26799999999998653  11111222221122358999999999765421       1122222


Q ss_pred             hhccC-C-eEEEEecCCCCChHh-HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHH
Q 014354          228 YKTRL-P-LVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEA  303 (426)
Q Consensus       228 ~~~~~-P-~IlVlNKiDl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~  303 (426)
                      . ..+ | ..+|+||+|...... ...+..       .+...-.|..     .+..+.....+.+.+++|++.|.| +..
T Consensus       234 ~-~~~~~i~gvVlnK~D~~~~~g~~l~~~~-------~~~~pi~~ig-----~Ge~~~dl~~f~~~~~~s~l~g~gdi~~  300 (432)
T 2v3c_C          234 K-EAVGEIGSIIVTKLDGSAKGGGALSAVA-------ETKAPIKFIG-----IGEGIDDLEPFDPKKFISRLLGMGDLES  300 (432)
T ss_dssp             H-TTSCSCEEEEEECSSSCSTTHHHHHHHH-------HSSCCEEEEC-----CSSSSSSCCBCCHHHHHHHHTCSSCSST
T ss_pred             h-hcccCCeEEEEeCCCCccchHHHHHHHH-------HHCCCEEEee-----cCccccccccCCHHHHHHHHcCCCcHHH
Confidence            2 235 6 889999999875432 111111       1000000000     000011223455677889999999 888


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHh------------hhccc
Q 014354          304 YFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRK------------DMEKS  352 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~------------e~~~~  352 (426)
                      |++.+.+.+++       +. +....++...+..+++++..+.+            +|||.
T Consensus       301 L~e~~~~~~~e-------~~-~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~  353 (432)
T 2v3c_C          301 LLEKAEDMVDE-------KT-EESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF  353 (432)
T ss_dssp             TSSTTTSCSCS-------SS-STTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred             HHHHHHHHHHh-------hh-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence            88777665432       21 33344444455667777877776            88884

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.32  E-value=1.3e-11  Score=122.57  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.||||||||+|+|++...             .+.++|++|                  +.|+.|.+..    .
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-------------~v~~~p~tT------------------i~p~~g~v~~----~   47 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI-------------EAANYPFCT------------------IEPNTGVVPM----P   47 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-------------------CCCC------------------CCCCSSEEEC----C
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-------------cccCCCCce------------------ECceEEEEec----C
Confidence            5799999999999999999998752             144555554                  2223333221    1


Q ss_pred             c-cHHHHHHHHHH-HhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          150 T-KFDEVISLIER-RADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       150 ~-~~~~~~~~~~~-~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      + .+.++...... ......+.||||||+.+.... ..++..+...+  ..+|++++|+|++.
T Consensus        48 ~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~i--r~ad~il~VvD~~~  108 (363)
T 1jal_A           48 DPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANI--RETDAIGHVVRCFE  108 (363)
T ss_dssp             CHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHH--HTCSEEEEEEECSC
T ss_pred             CcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHH--HhcCeEEEEEecCC
Confidence            1 11111111100 001257999999999875211 11222222222  35799999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.31  E-value=1.4e-11  Score=123.03  Aligned_cols=103  Identities=16%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|+||||||||+|+|++...             .+..+|++|                  +.||-|++.    +.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~-------------~v~~~p~~T------------------i~pn~g~~~----v~   46 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA-------------LAANYPFAT------------------IDKNVGVVP----LE   46 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT-------------TCSSCCGGG------------------GSTTEEEEE----CC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-------------cccCCCCce------------------eccceeeEe----cC
Confidence            3589999999999999999998752             144555544                  111222211    01


Q ss_pred             c-cHHHHHHHHHHHh-----cCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          150 T-KFDEVISLIERRA-----DHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       150 ~-~~~~~~~~~~~~~-----~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      + .+.+....+....     ....+.||||||+.+.... ..++..+...+  ..+|++++|+|++.
T Consensus        47 ~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~i--r~ad~ii~VvD~~~  111 (368)
T 2dby_A           47 DERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHI--REVAAIAHVLRCFP  111 (368)
T ss_dssp             CHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHH--HTCSEEEEEEECCC
T ss_pred             hHHHHHHHHHhcccccccccCCceEEEEECCCccccccccchHHHHHHHHH--HhCCEEEEEEECCC
Confidence            1 1111111111000     2357999999999875321 12333333333  35799999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.29  E-value=4e-11  Score=121.91  Aligned_cols=156  Identities=19%  Similarity=0.180  Sum_probs=90.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+++|++||||||++.+|+......+.++.++..|+.-.    +.    .  .....+-...++.     +.....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~----aa----~--eqL~~~~~~~gvp-----v~~~~~  163 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP----GA----Y--HQLRQLLDRYHIE-----VFGNPQ  163 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST----HH----H--HHHHHHHGGGTCE-----EECCTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch----hH----H--HHHHHHHHhcCCc-----EEecCC
Confidence            5789999999999999999999998888889999988875321    00    0  0011111122211     111000


Q ss_pred             ccccHHHH-HHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDEV-ISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~~-~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      ..+...-. ..+..+...+++++||||||....  ...+...+........+|.+++|+|+..+.+..       .....
T Consensus       164 ~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~-------~~a~~  234 (443)
T 3dm5_A          164 EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTIGQQAY-------NQALA  234 (443)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH-------HHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH-------HHHHH
Confidence            01111110 112233345799999999997543  122223333334445689999999998653221       12222


Q ss_pred             HhhccCCeEEEEecCCCCChH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~  247 (426)
                      +...-.+..+|+||+|.....
T Consensus       235 f~~~~~i~gVIlTKlD~~~~g  255 (443)
T 3dm5_A          235 FKEATPIGSIIVTKLDGSAKG  255 (443)
T ss_dssp             HHHSCTTEEEEEECCSSCSSH
T ss_pred             HHhhCCCeEEEEECCCCcccc
Confidence            333334567999999998754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.23  E-value=1.3e-10  Score=118.14  Aligned_cols=157  Identities=20%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+++|++||||||++..|.......++++.++..|+.-   + +.    .+  ....+....++..    ... ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r---~-~a----~e--qL~~~~~~~gv~~----~~~-~~  160 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR---P-AA----YD--QLLQLGNQIGVQV----YGE-PN  160 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC---H-HH----HH--HHHHHHHTTTCCE----ECC-TT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc---h-hH----HH--HHHHHHHhcCCce----eec-cc
Confidence            578999999999999999999999988889999998887421   1 00    00  1111122222211    100 00


Q ss_pred             ccccHHH-HHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          148 FTTKFDE-VISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       148 ls~~~~~-~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      ......- ...+..+...+++++||||||...+.....+...+........++.+++|+|+..+.+..       ..+..
T Consensus       161 ~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~-------~~a~~  233 (433)
T 3kl4_A          161 NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY-------DLASR  233 (433)
T ss_dssp             CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH-------HHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH-------HHHHH
Confidence            0111100 012223334589999999999744111222233344444445678999999998653321       22233


Q ss_pred             HhhccCCeEEEEecCCCCCh
Q 014354          227 LYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~  246 (426)
                      +...-.+..+|+||+|....
T Consensus       234 f~~~~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          234 FHQASPIGSVIITKMDGTAK  253 (433)
T ss_dssp             HHHHCSSEEEEEECGGGCSC
T ss_pred             HhcccCCcEEEEeccccccc
Confidence            33334568899999998754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.23  E-value=1.2e-11  Score=135.89  Aligned_cols=67  Identities=25%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      ++.+.||||||+.++.      ..+...+  ..+|.+|+|+|+..+...++.     ..+..+...++|.|+|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~------~~~~~~l--~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFS------SEVTAAL--RVTDGALVVVDTIEGVCVQTE-----TVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSC------HHHHHHH--HTCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhH------HHHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCeEEEEECCCcc
Confidence            4688999999998863      1222233  347999999999998876652     23344456789999999999986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.13  E-value=7.4e-10  Score=111.24  Aligned_cols=109  Identities=16%  Similarity=0.180  Sum_probs=63.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+|+|+|+||||||||+|+|++...+.            ++++|+++                  +.|+.|.+.. 
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~------------~~~~p~tT------------------i~p~~G~v~v-   65 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGN------------PANYPYAT------------------IDPEEAKVAV-   65 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTS------------TTCCSSCC------------------CCTTEEEEEE-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccc------------ccCCCcee------------------ecceeeeeee-
Confidence            4467899999999999999999999976422            56666665                  2223333221 


Q ss_pred             ccccccHHHHHHHHHHH-hcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          146 NLFTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                        ....+..+....... .-...+.+|||||+....+.. .++..+...+  ..+|.+++|+|++.
T Consensus        66 --~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~i--r~~d~il~Vvd~~~  127 (392)
T 1ni3_A           66 --PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHV--RAVDAIYQVVRAFD  127 (392)
T ss_dssp             --CCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHH--TTCSEEEEEEECCC
T ss_pred             --CCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHH--HHHHHHHHHHhccc
Confidence              011122221111000 001357999999987653221 1333333333  34799999999865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.13  E-value=2.9e-10  Score=108.77  Aligned_cols=143  Identities=23%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++++|+|++|||||||+|.|+|...+..+.+.+.+.+.     +.+..   +..+               +.+..     
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i-----~~~~~---~~~i---------------~~v~q-----   54 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI-----PKTVE---IKAI---------------GHVIE-----   54 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------C-----CCCCS---CCEE---------------EESCC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc-----Cccee---eeee---------------EEEee-----
Confidence            57999999999999999999999877766555443221     10100   0000               00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccc----hhchHHHHH----HHHHh------------cCCcEEEEEEeCC-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIIT----EAFAS------------TFPTVVTYVVDTP-  208 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~----~~~~~~~l~----~~~~~------------~~~d~vl~VVDa~-  208 (426)
                          .       ..-...+.++|+||+.....    +......+.    .....            +.+.++++++|.+ 
T Consensus        55 ----~-------~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~  123 (270)
T 3sop_A           55 ----E-------GGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG  123 (270)
T ss_dssp             ---------------CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS
T ss_pred             ----c-------CCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC
Confidence                0       01124788999999865321    111111111    11111            2357889999965 


Q ss_pred             CCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354          209 RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (426)
Q Consensus       209 ~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~  257 (426)
                      +++++.+     ...+..+... .++|+|+||+|..+..++......+.
T Consensus       124 ~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~  166 (270)
T 3sop_A          124 HSLRPLD-----LEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVR  166 (270)
T ss_dssp             SSCCHHH-----HHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             CcCCHHH-----HHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHH
Confidence            7777765     3344445555 89999999999999876655544443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.08  E-value=2.9e-09  Score=104.63  Aligned_cols=156  Identities=20%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .++.+++|+|++|||||||++.|.+...+.++.+.+.+.|..-.    ..    .+  ....+-++.++.    ++....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~----~a----~e--ql~~~~~~~gv~----~v~q~~  192 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA----GA----IE--QLEEHAKRIGVK----VIKHSY  192 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSST----TH----HH--HHHHHHHHTTCE----EECCCT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccccc----ch----HH--HHHHHHHHcCce----EEeccc
Confidence            56789999999999999999999999988899999887764210    00    00  111112233311    000000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      .+.....-.-.+..+...+++++++||+|....  .......+....+...+|-.++++|+..+.   .    .+..+..
T Consensus       193 ~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~--~~~l~~eL~~i~ral~~de~llvLDa~t~~---~----~~~~~~~  263 (328)
T 3e70_C          193 GADPAAVAYDAIQHAKARGIDVVLIDTAGRSET--NRNLMDEMKKIARVTKPNLVIFVGDALAGN---A----IVEQARQ  263 (328)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCT--TTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---H----HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccchhhHHhhccchhH--HHHHHHHHHHHHHHhcCCCCEEEEecHHHH---H----HHHHHHH
Confidence            000011111122223345689999999998653  122223333333334578999999987653   1    1222232


Q ss_pred             HhhccCCeEEEEecCCCCC
Q 014354          227 LYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~  245 (426)
                      +.+.--..+|++||.|...
T Consensus       264 ~~~~~~it~iilTKlD~~a  282 (328)
T 3e70_C          264 FNEAVKIDGIILTKLDADA  282 (328)
T ss_dssp             HHHHSCCCEEEEECGGGCS
T ss_pred             HHHhcCCCEEEEeCcCCcc
Confidence            3333345689999999754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.06  E-value=4.6e-09  Score=106.99  Aligned_cols=155  Identities=21%  Similarity=0.272  Sum_probs=86.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++.+|+++|.+|+||||+...|....... +.++.++..|+.-..     .   .+.  ...+....++..-.+-. . 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~-----a---~~q--l~~~~~~~~l~v~~~~~-~-  165 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA-----A---IKQ--LETLAEQVGVDFFPSDV-G-  165 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT-----H---HHH--HHHHHHHHTCEECCCCS-S-
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc-----H---HHH--HHhhcccCCeeEEeCCC-C-
Confidence            456799999999999999999999888777 899999999864211     0   010  01112222321100000 0 


Q ss_pred             ccccccHHHHHHHH-HHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH
Q 014354          146 NLFTTKFDEVISLI-ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (426)
Q Consensus       146 ~~ls~~~~~~~~~~-~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~  224 (426)
                         .+...-....+ .....+++++||||||.....  ......+........++.+++|+|+..+.+.   +    ..+
T Consensus       166 ---~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~--~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~----~~~  233 (433)
T 2xxa_A          166 ---QKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD--EAMMDEIKQVHASINPVETLFVVDAMTGQDA---A----NTA  233 (433)
T ss_dssp             ---SCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC--HHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---H----HHH
T ss_pred             ---CCHHHHHHHHHHHHHhCCCCEEEEECCCccccc--HHHHHHHHHHHHhhcCcceeEEeecchhHHH---H----HHH
Confidence               00111101112 222367999999999975531  1122222222223468999999999765322   1    111


Q ss_pred             HHHhhccCC-eEEEEecCCCCCh
Q 014354          225 SILYKTRLP-LVLAFNKTDVAQH  246 (426)
Q Consensus       225 ~~l~~~~~P-~IlVlNKiDl~~~  246 (426)
                      ..+. ..+| .-+|+||+|....
T Consensus       234 ~~f~-~~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          234 KAFN-EALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             HHHH-HHSCCCCEEEECTTSSSC
T ss_pred             HHHh-ccCCCeEEEEecCCCCcc
Confidence            2122 2345 3479999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.04  E-value=3.1e-09  Score=103.98  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++++|+|++|||||||+|+|++..  .+.+++|+..+.+...+....   +....      ..+-...|||+||+.+ 
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~---l~~~~------~~~~el~~gCicc~~~-   70 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQL---IGDRA------TQIKTLTNGCICCSRS-   70 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEE---ECTTS------CEEEEETTSCEEECTT-
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHH---HhCCC------CCEEEECCCceEEccc-
Confidence            45789999999999999999999975  455666666554322221110   00000      0001114799999854 


Q ss_pred             ccccHHHHHH-HH---HHHhcCCCEEEEcCCCcccccchhchHHHH---HHHHHhcCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          148 FTTKFDEVIS-LI---ERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       148 ls~~~~~~~~-~~---~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                       . .+...+. ++   +...-.++++++++.|+.++..   ....+   .........+.++.++|+.+.....      
T Consensus        71 -~-~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~---~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------  139 (318)
T 1nij_A           71 -N-ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------  139 (318)
T ss_dssp             -S-CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------
T ss_pred             -H-HHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH---HHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------
Confidence             2 3333332 32   2111134999999999876521   00011   0111123356788899986432211      


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ........|...+.++++||.|+...
T Consensus       140 ~~ls~g~~Q~~~ad~ill~k~dl~de  165 (318)
T 1nij_A          140 NQFTIAQSQVGYADRILLTKTDVAGE  165 (318)
T ss_dssp             HHCHHHHHHHHTCSEEEEECTTTCSC
T ss_pred             hhchHHHHHHHhCCEEEEECcccCCH
Confidence            11112234566788999999999965

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.01  E-value=7.4e-09  Score=100.36  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=86.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+++++|++|+||||++..|.+.....++++.+++.|+.-.   ..     ..  ....+.+..++.--.+..      
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~---~a-----~~--ql~~~~~~~~v~v~~~~~------  161 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP---AA-----LE--QLQQLGQQIGVPVYGEPG------  161 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS---HH-----HH--HHHHHHHHHTCCEECCTT------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH---HH-----HH--HHHHHhccCCeEEEecCC------
Confidence            789999999999999999999999888888999988885321   00     00  011122333332100000      


Q ss_pred             cccHHHHH-HHHHH-HhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          149 TTKFDEVI-SLIER-RADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       149 s~~~~~~~-~~~~~-~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                      ...-..++ ..... ...+++++||||||.........+...+........+|.+++|+|+..+.   ..    ...+..
T Consensus       162 ~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~----~~~~~~  234 (297)
T 1j8m_F          162 EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KA----YDLASK  234 (297)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GH----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HH----HHHHHH
Confidence            00111111 11222 23679999999999865100111111222222334589999999996431   11    222222


Q ss_pred             HhhccCC-eEEEEecCCCCCh
Q 014354          227 LYKTRLP-LVLAFNKTDVAQH  246 (426)
Q Consensus       227 l~~~~~P-~IlVlNKiDl~~~  246 (426)
                      +.. .+| ..+|+||+|....
T Consensus       235 ~~~-~~~i~gvVlnk~D~~~~  254 (297)
T 1j8m_F          235 FNQ-ASKIGTIIITKMDGTAK  254 (297)
T ss_dssp             HHH-TCTTEEEEEECGGGCTT
T ss_pred             HHh-hCCCCEEEEeCCCCCcc
Confidence            222 466 6789999997653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=117.36  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ..+.+|+|+|.||||||||+|+|++....             ++++|++|                  +.|+.|.+..  
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------~~~~p~tT------------------i~p~~g~v~v--   66 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------AENFPFCT------------------IDPNESRVPV--   66 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEEC--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcc-------------ccCCCccc------------------cCceeEEEEE--
Confidence            35578999999999999999999987532             44455554                  1222222210  


Q ss_pred             cccc-cHHHHHHHHH-HHhcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          147 LFTT-KFDEVISLIE-RRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       147 ~ls~-~~~~~~~~~~-~~~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                        .+ .+.++..... ...-..++.||||||+...... ..++......+  ..+|++++|+|++.
T Consensus        67 --~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~i--r~aD~Il~VvD~~~  128 (396)
T 2ohf_A           67 --PDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHI--SACDGIFHLTRAFE  128 (396)
T ss_dssp             --CCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHH--HTSSSEEEEEEC--
T ss_pred             --CCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHH--HhcCeEEEEEecCC
Confidence              11 1111111000 0001346999999999875321 01111222222  35799999999964

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=2.7e-11  Score=121.13  Aligned_cols=132  Identities=15%  Similarity=0.072  Sum_probs=76.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|+++|.+|+|||||+|+|++........       +.++..|++|    ++..                 ..     
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~gtT----~~~~-----------------~~-----  208 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV-------ITTSYFPGTT----LDMI-----------------EI-----  208 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CEEEECTTSS----CEEE-----------------EE-----
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccc-------eeecCCCCeE----EeeE-----------------EE-----
Confidence            3579999999999999999999973211111       1245555554    1111                 00     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc--hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~--~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    .-+..+.|+||||+.....  .......+...+.....+.++|++++........+     ..+..
T Consensus       209 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~  269 (369)
T 3ec1_A          209 --------------PLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGL-----ARLDY  269 (369)
T ss_dssp             --------------ECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEE
T ss_pred             --------------EeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCE-----EEEEE
Confidence                          0113589999999976531  11111223333333557899999998432111110     00122


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEW  252 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~  252 (426)
                      +...+.|+++++||+|.+........
T Consensus       270 l~~~~~~~~~v~~k~d~~~~~~~~~~  295 (369)
T 3ec1_A          270 IKGGRRSFVCYMANELTVHRTKLEKA  295 (369)
T ss_dssp             EESSSEEEEEEECTTSCEEEEEGGGH
T ss_pred             ccCCCceEEEEecCCcccccccHHHH
Confidence            34457899999999999876544333

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.99  E-value=1.1e-09  Score=104.99  Aligned_cols=114  Identities=10%  Similarity=0.068  Sum_probs=82.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------ccccccccc-----ccchh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------AVMTLPFAA-----NIDIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------~v~~~~~~t-----~i~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.            .+..+++.+     ...+.
T Consensus        24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~  103 (275)
T 3gfo_A           24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVY  103 (275)
T ss_dssp             EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHH
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHH
Confidence            4555666778899999999999999999999999888877777765432            112222211     00111


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +                ..++.++++.+++.....  .....||+|++|++.+|+++..+++++|+|.|
T Consensus       104 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP  170 (275)
T 3gfo_A          104 QDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD--KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP  170 (275)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            1                124567888998865322  22345899999999999999999999999999

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.99  E-value=1.9e-09  Score=107.03  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.++...++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..             +..+++..++    .++
T Consensus        44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~  123 (366)
T 3tui_C           44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF  123 (366)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHH
T ss_pred             EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHH
Confidence            55667778889999999999999999999999998888887777654421             1222222111    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +                ..++.++++.+++.....-.  ...||+|++|++.+|+++..+++++|+|.|-
T Consensus       124 env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT  191 (366)
T 3tui_C          124 GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDQAT  191 (366)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            1                12456789999987543322  2369999999999999999999999999993

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.97  E-value=1.9e-09  Score=106.90  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc------------ccccccccccc----chh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------AVMTLPFAANI----DIR-  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~------------~v~~~~~~t~i----~~r-  121 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.            .+..+++...+    .++ 
T Consensus        20 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~e   99 (359)
T 3fvq_A           20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR   99 (359)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHH
T ss_pred             EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHH
Confidence            4556667778899999999999999999999999888877777655431            01111111110    011 


Q ss_pred             ---------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 ---------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ---------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                     ...++.++++.+++.......  ...||+|++|++.+++++..+++++|+|.|
T Consensus       100 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~~P~lLLLDEP  165 (359)
T 3fvq_A          100 NIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAPDPELILLDEP  165 (359)
T ss_dssp             HHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                           122467789999987543322  236999999999999999999999999999

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.97  E-value=3.5e-09  Score=108.72  Aligned_cols=160  Identities=17%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG  140 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~  140 (426)
                      ..+....++.+|+|+|++|||||||++.|.+.....++.+.+.+.|..-.    ..    ...  +..+-.+.++    +
T Consensus       285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~----aa----~eQ--L~~~~~r~~I----~  350 (503)
T 2yhs_A          285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA----AA----VEQ--LQVWGQRNNI----P  350 (503)
T ss_dssp             CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH----HH----HHH--HHHHHHHHTC----C
T ss_pred             CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch----hh----HHH--HHHHHHhcCc----e
Confidence            44555678889999999999999999999999888888888876653210    00    000  0001011111    1


Q ss_pred             cccc-cccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHH---HHHHHh---cCCcEEEEEEeCCCCCC
Q 014354          141 ILTS-LNLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFAS---TFPTVVTYVVDTPRSAN  212 (426)
Q Consensus       141 i~~~-~~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l---~~~~~~---~~~d~vl~VVDa~~~~~  212 (426)
                      ++.. ...+ .......+  ..+...+++++||||+|.....  ..+...+   ....+.   ..++-+++|+|+..+.+
T Consensus       351 vV~Q~~~~~p~~tV~e~l--~~a~~~~~DvVLIDTaGrl~~~--~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~  426 (503)
T 2yhs_A          351 VIAQHTGADSASVIFDAI--QAAKARNIDVLIADTAGRLQNK--SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN  426 (503)
T ss_dssp             EECCSTTCCHHHHHHHHH--HHHHHTTCSEEEECCCCSCCCH--HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH
T ss_pred             EEecccCcCHHHHHHHHH--HHHHhcCCCEEEEeCCCccchh--hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH
Confidence            1111 0001 11122222  2233567899999999985431  1111222   222221   23678899999876532


Q ss_pred             chhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          213 PMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       213 ~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ...       .+..+...--...+|+||.|...
T Consensus       427 al~-------~ak~f~~~~~itgvIlTKLD~ta  452 (503)
T 2yhs_A          427 AVS-------QAKLFHEAVGLTGITLTKLDGTA  452 (503)
T ss_dssp             HHH-------HHHHHHHHTCCSEEEEECGGGCS
T ss_pred             HHH-------HHHHHHhhcCCCEEEEEcCCCcc
Confidence            221       12222222123568999999653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.97  E-value=3.5e-09  Score=99.53  Aligned_cols=112  Identities=12%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccccc----chh------
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAANI----DIR------  121 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t~i----~~r------  121 (426)
                      .+.+....+ .+++|+|++|||||||++.|+|...+..+.+.+.+.+.        .+...++...+    .++      
T Consensus        16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~   94 (240)
T 2onk_A           16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHH
Confidence            344555567 89999999999999999999999888888877755331        12222222111    011      


Q ss_pred             --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                              ...++.++++.+++......  ....||+|+++++.+++++..+++++|+|.|
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGqkqRv~lAral~~~p~lllLDEP  153 (240)
T 2onk_A           95 LRNVERVERDRRVREMAEKLGIAHLLDR--KPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             CTTSCHHHHHHHHHHHHHTTTCTTTTTC--CGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             HHHcCCchHHHHHHHHHHHcCCHHHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                    12235677888988653222  2346999999999999999999999999999

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.96  E-value=3.1e-09  Score=99.56  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------ccccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.              .+..+++...+    .+
T Consensus        21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv  100 (235)
T 3tif_A           21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA  100 (235)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred             EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcH
Confidence            4455666778899999999999999999999999888877776655321              02222222111    01


Q ss_pred             hh-------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD-------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~-------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++                   ..++.++++.+++.... .-.....||+|++|++.+|+++..+++++|+|.|-
T Consensus       101 ~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt  173 (235)
T 3tif_A          101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQQRVAIARALANNPPIILADQPT  173 (235)
T ss_dssp             HHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh-hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            11                   12345678888875421 01223458999999999999999999999999993

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.96  E-value=1.6e-08  Score=98.43  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=89.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+|+|+|++|+||||++..|.+.....++++.+++.|+.-.          ...-....+.+..++..    +.. 
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~----------~a~eqL~~~~~~~gl~~----~~~-  165 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATV----ISH-  165 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEE----ECC-
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH----------HHHHHHHHHHHHcCCcE----Eec-
Confidence            456789999999999999999999999877888898888774210          00011223444444321    111 


Q ss_pred             ccccccHHHHH---HHHHHHhcCCCEEEEcCCCcccccchhchHHHHHH---HHH---hcCCcEEEEEEeCCCCCCchhh
Q 014354          146 NLFTTKFDEVI---SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE---AFA---STFPTVVTYVVDTPRSANPMTF  216 (426)
Q Consensus       146 ~~ls~~~~~~~---~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~---~~~---~~~~d~vl~VVDa~~~~~~~~~  216 (426)
                        .+++..+.+   .++.+...+++++|+||||....  .......+..   .+.   ...++.+++|+|+..+   ...
T Consensus       166 --~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~--~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~  238 (306)
T 1vma_A          166 --SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNG  238 (306)
T ss_dssp             --STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHH
T ss_pred             --CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh--HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHH
Confidence              123333333   45556678899999999996332  1211122222   221   1247889999999632   111


Q ss_pred             hhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          217 MSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       217 ~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      .    .....+.+.-...-+|+||.|....
T Consensus       239 l----~~a~~~~~~~~i~gvVlTk~D~~~~  264 (306)
T 1vma_A          239 L----VQAKIFKEAVNVTGIILTKLDGTAK  264 (306)
T ss_dssp             H----HHHHHHHHHSCCCEEEEECGGGCSC
T ss_pred             H----HHHHHHHhcCCCCEEEEeCCCCccc
Confidence            1    1111122222234678999997654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.95  E-value=2.7e-09  Score=101.85  Aligned_cols=115  Identities=12%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIR---  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r---  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +..+++...+    .++   
T Consensus        27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l  106 (266)
T 4g1u_C           27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI  106 (266)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHH
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHH
Confidence            44566667788999999999999999999999998888888877654311          1111111100    011   


Q ss_pred             -----------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhc------CCCEEEEcCCC
Q 014354          122 -----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPG  175 (426)
Q Consensus       122 -----------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~------~~~~~liDTPG  175 (426)
                                 ...++.++++.+++......  ....||+|++|++.+|+++..      +++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt  175 (266)
T 4g1u_C          107 QMGRAPYGGSQDRQALQQVMAQTDCLALAQR--DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT  175 (266)
T ss_dssp             HGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS--BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred             HhhhhhcCcHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence                       12346778999998654322  224699999999999999998      99999999993

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.95  E-value=1.8e-10  Score=115.19  Aligned_cols=136  Identities=14%  Similarity=0.070  Sum_probs=77.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|+++|.+|+|||||+|+|++.......      ..+.++..|++|    ++..                 ..     
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~------~~~~~~~~~gtT----~~~~-----------------~~-----  207 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETE------NVITTSHFPGTT----LDLI-----------------DI-----  207 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCS------SCCEEECCC--------CEE-----------------EE-----
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccc------cceecCCCCCee----cceE-----------------EE-----
Confidence            357999999999999999999997532100      001245556555    1111                 00     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccc--hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~--~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                    .-...+.++||||+.....  .......+...+.....+.++|++++........+     ..+..
T Consensus       208 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~~d~  268 (368)
T 3h2y_A          208 --------------PLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-----ARFDY  268 (368)
T ss_dssp             --------------ESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEE
T ss_pred             --------------EecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-----EEEEE
Confidence                          0112489999999977531  11122333333334557889999998432111110     00122


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQD  255 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~  255 (426)
                      +...+.|+++|+||+|.+.........+.
T Consensus       269 l~~~~~~~~~v~nk~d~~~~~~~~~~~~~  297 (368)
T 3h2y_A          269 VSGGRRAFTCHFSNRLTIHRTKLEKADEL  297 (368)
T ss_dssp             EESSSEEEEEEECTTSCEEEEEHHHHHHH
T ss_pred             ecCCCceEEEEecCccccccccHHHHHHH
Confidence            34457899999999999987654444333

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.94  E-value=7.3e-10  Score=112.15  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             EEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHH
Q 014354          200 VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (426)
Q Consensus       200 ~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~  257 (426)
                      +++|++|+.+++...+     ..++..+. .+.|+|+|+||+|..++.++..+...+.
T Consensus       151 ~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~  202 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKIT  202 (427)
T ss_dssp             EEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHH
Confidence            4777888888877665     33444444 6889999999999999876655554444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.94  E-value=3e-09  Score=98.85  Aligned_cols=115  Identities=12%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..              +...++...+    .+
T Consensus        20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   99 (224)
T 2pcj_A           20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA   99 (224)
T ss_dssp             EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence            34455666788899999999999999999999998877777766543311              1112221111    01


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++                ..++.++++.+++......  ....||+|+++++.+++++..+++++|+|.|=
T Consensus       100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt  168 (224)
T 2pcj_A          100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR--KPYELSGGEQQRVAIARALANEPILLFADEPT  168 (224)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred             HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            11                1234567889998654322  23469999999999999999999999999993

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.90  E-value=2.2e-09  Score=99.17  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=80.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----ccccccccc----------ccchh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----AVMTLPFAA----------NIDIR--  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----~v~~~~~~t----------~i~~r--  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.     .+..+++..          ++...  
T Consensus        25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~  104 (214)
T 1sgw_A           25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS  104 (214)
T ss_dssp             EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHH
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence            3344555667889999999999999999999999887777776644321     111111111          11110  


Q ss_pred             ------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       122 ------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ...++.++++.+++... .  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~l~~~gl~~~-~--~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A          105 LYGVKVNKNEIMDALESVEVLDL-K--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             HTTCCCCHHHHHHHHHHTTCCCT-T--SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             hcCCchHHHHHHHHHHHcCCCcC-C--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence                  12245678899998754 2  223468999999999999999999999999993

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.90  E-value=6.9e-09  Score=98.45  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=80.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---------cccccccccc----chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---------v~~~~~~t~i----~~r~---  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..         +..+++...+    .+++   
T Consensus        31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~  110 (256)
T 1vpl_A           31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR  110 (256)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHH
T ss_pred             EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHH
Confidence            44555667788899999999999999999999998887777766543311         1112221111    1111   


Q ss_pred             -------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 -------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                   ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  174 (256)
T 1vpl_A          111 FVAGFYASSSSEIEEMVERATEIAGLGEKIK--DRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  174 (256)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG--SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                         123456788888864322  223468999999999999999999999999993

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.90  E-value=6.7e-09  Score=98.92  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccccc----chhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAANI----DIRD  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t~i----~~r~  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..            +..+++...+    .+++
T Consensus        40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e  119 (263)
T 2olj_A           40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN  119 (263)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred             EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH
Confidence            44566667788999999999999999999999998887777776553321            1112221110    0111


Q ss_pred             -----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                       ..++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~lAraL~~~p~lllLDEP  186 (263)
T 2olj_A          120 NITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAMEPKIMLFDEP  186 (263)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence                             123456788888864322  22345899999999999999999999999999

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.89  E-value=8.4e-09  Score=97.66  Aligned_cols=115  Identities=15%  Similarity=0.084  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE------EeccCcccc-ccccccccch-----------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY------VMNLDPAVM-TLPFAANIDI-----------  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~------i~~~d~~v~-~~~~~t~i~~-----------  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.      ++..++... ......++..           
T Consensus        21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~  100 (253)
T 2nq2_C           21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK  100 (253)
T ss_dssp             EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCC
T ss_pred             EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccC
Confidence            3344555667889999999999999999999999877655542      222222211 0000011111           


Q ss_pred             ---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 ---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                         ....++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       101 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt  156 (253)
T 2nq2_C          101 PKSHDYQVAMQALDYLNLTHLAK--REFTSLSGGQRQLILIARAIASECKLILLDEPT  156 (253)
T ss_dssp             CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred             CCHHHHHHHHHHHHHcCChHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence               11234567888998864322  223469999999999999999999999999993

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.89  E-value=5.3e-09  Score=99.56  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=80.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------------ccccccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPFA  115 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------------v~~~~~~  115 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..                       +..+++.
T Consensus        22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~  101 (262)
T 1b0u_A           22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH  101 (262)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecC
Confidence            44556667788999999999999999999999998887777766543321                       1111221


Q ss_pred             cc----------cch-h----------hhHHHHHHHHHcCCCCC-CCcccccccccccHHHHHHHHHHHhcCCCEEEEcC
Q 014354          116 AN----------IDI-R----------DTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT  173 (426)
Q Consensus       116 t~----------i~~-r----------~~~~~~~~~~~~~l~~n-g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDT  173 (426)
                      ..          +.. .          ...++.++++.+++... ..  .....||+|+++++.+++++..+++++|+|.
T Consensus       102 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDE  179 (262)
T 1b0u_A          102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG--KYPVHLSGGQQQRVSIARALAMEPDVLLFDE  179 (262)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT--SCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            11          111 0          01234567888887643 22  2234599999999999999999999999999


Q ss_pred             CC
Q 014354          174 PG  175 (426)
Q Consensus       174 PG  175 (426)
                      |-
T Consensus       180 Pt  181 (262)
T 1b0u_A          180 PT  181 (262)
T ss_dssp             TT
T ss_pred             CC
Confidence            93

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.89  E-value=5.9e-09  Score=104.16  Aligned_cols=115  Identities=12%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~  120 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +..+++..          ++..
T Consensus        19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~   98 (381)
T 3rlf_A           19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF   98 (381)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTH
T ss_pred             EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHH
Confidence            44566677788999999999999999999999998888777776554311        11111111          1111


Q ss_pred             --h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 --R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 --r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        +        ...++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|=
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A           99 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDR--KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTC--CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcC--ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence              0        11245678899998754332  23469999999999999999999999999993

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.88  E-value=1e-08  Score=101.87  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~  120 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.        .+..+++..          ++..
T Consensus        19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~   98 (362)
T 2it1_A           19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAF   98 (362)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHH
T ss_pred             EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHH
Confidence            3455566778889999999999999999999999888877777654331        011111111          1111


Q ss_pred             --h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 --R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 --r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                        +      .  ..++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  160 (362)
T 2it1_A           99 PLELRKAPREEIDKKVREVAKMLHIDKLLNR--YPWQLSGGQQQRVAIARALVKEPEVLLLDEP  160 (362)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence              0      0  1235678899998754332  2346999999999999999999999999999

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.87  E-value=9.8e-09  Score=101.94  Aligned_cols=114  Identities=16%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----------ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----------NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----------~i~~  120 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.        .+..+++..          ++..
T Consensus        19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~   98 (359)
T 2yyz_A           19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF   98 (359)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred             EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            3455666778889999999999999999999999888877777654331        011111111          1110


Q ss_pred             --h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 --R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 --r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                        +        ...++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus        99 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSgGq~QRvalArAL~~~P~lLLLDEP  160 (359)
T 2yyz_A           99 PLRARRISKDEVEKRVVEIARKLLIDNLLDR--KPTQLSGGQQQRVALARALVKQPKVLLFDEP  160 (359)
T ss_dssp             GGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence              0        01245678999998653222  2246999999999999999999999999999

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.86  E-value=6.4e-09  Score=99.90  Aligned_cols=114  Identities=12%  Similarity=0.110  Sum_probs=80.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc------------cccccccc----------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------------VMTLPFAA----------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~------------v~~~~~~t----------  116 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..            +..+++..          
T Consensus        37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv  116 (279)
T 2ihy_A           37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV  116 (279)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred             EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence            44556667788899999999999999999999998888777777553321            11111111          


Q ss_pred             --ccch--------------hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          117 --NIDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       117 --~i~~--------------r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                        ++..              ....++.++++.+++.....  .....||+|+++++.+++++..+++++|+|.|
T Consensus       117 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEP  188 (279)
T 2ihy_A          117 IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ--QYIGYLSTGEKQRVMIARALMGQPQVLILDEP  188 (279)
T ss_dssp             HHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             HHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence              1100              00123456788888754322  22346999999999999999999999999999

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.86  E-value=1.3e-08  Score=96.47  Aligned_cols=115  Identities=13%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------cccccccccc----------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------AVMTLPFAAN----------  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------~v~~~~~~t~----------  117 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.           .+...++...          
T Consensus        23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en  102 (257)
T 1g6h_A           23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN  102 (257)
T ss_dssp             EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence            4456666778889999999999999999999999888777776654321           0111121111          


Q ss_pred             cch--h---------------------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          118 IDI--R---------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       118 i~~--r---------------------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +..  .                     ...++.++++.+++.....  .....||+|++|++.+++++..+++++|+|.|
T Consensus       103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP  180 (257)
T 1g6h_A          103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD--RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP  180 (257)
T ss_dssp             HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC--CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            100  0                     0123566788888764322  22346899999999999999999999999999


Q ss_pred             C
Q 014354          175 G  175 (426)
Q Consensus       175 G  175 (426)
                      -
T Consensus       181 t  181 (257)
T 1g6h_A          181 I  181 (257)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.85  E-value=9.1e-09  Score=101.96  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccccc----cchhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----IDIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~----i~~r~----  122 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +..+++...    ..+++    
T Consensus        31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  110 (355)
T 1z47_A           31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSF  110 (355)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHH
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            34455666788899999999999999999999998888777766543310        111111110    00111    


Q ss_pred             ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                  ..++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus       111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  172 (355)
T 1z47_A          111 GLREKRVPKDEMDARVRELLRFMRLESYANR--FPHELSGGQQQRVALARALAPRPQVLLFDEP  172 (355)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                        1245678889988643222  2346999999999999999999999999999

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.85  E-value=1.2e-08  Score=100.97  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccc----ccchhhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAA----NIDIRDT---  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t----~i~~r~~---  123 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+.        .+..+++..    ...+++.   
T Consensus        16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~   95 (348)
T 3d31_A           16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF   95 (348)
T ss_dssp             EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            4455566778889999999999999999999999888878777655331        011111111    1111111   


Q ss_pred             ----------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ----------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                .++.++++.+++......  ....||+|++|++.+++++..+++++|+|.|
T Consensus        96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~LSgGq~QRvalAraL~~~P~lLLLDEP  154 (348)
T 3d31_A           96 GMRMKKIKDPKRVLDTARDLKIEHLLDR--NPLTLSGGEQQRVALARALVTNPKILLLDEP  154 (348)
T ss_dssp             HHHHHCCCCHHHHHHHHHHTTCTTTTTS--CGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred             HHHHcCCCHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence                      345678899998754332  2246999999999999999999999999999

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.85  E-value=1.1e-08  Score=102.15  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccc----------ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAA----------NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t----------~i~~  120 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..        +..+++..          ++..
T Consensus        27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  106 (372)
T 1v43_A           27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF  106 (372)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHT
T ss_pred             EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHH
Confidence            44556667788899999999999999999999998888777776543310        11111111          1100


Q ss_pred             ----h----h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 ----R----D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 ----r----~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                          +    .  ..++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus       107 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  168 (372)
T 1v43_A          107 PLKIKKFPKDEIDKRVRWAAELLQIEELLNR--YPAQLSGGQRQRVAVARAIVVEPDVLLMDEP  168 (372)
T ss_dssp             TCC--CCCHHHHHHHHHHHHHHTTCGGGTTS--CTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence                0    0  1245678899988643222  2235899999999999999999999999999

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.84  E-value=1.9e-08  Score=95.74  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=80.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------ccc-cccccccc--chhh------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVM-TLPFAANI--DIRD------  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~-~~~~~t~i--~~r~------  122 (426)
                      ..+.+.... +.+++|+|++|||||||++.|+|.. +..+.+.+.+.+.       .+. ..++...+  .+++      
T Consensus        21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~   98 (263)
T 2pjz_A           21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE   98 (263)
T ss_dssp             EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHH
T ss_pred             EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhh
Confidence            344555667 8899999999999999999999998 8877777655321       122 33332211  1111      


Q ss_pred             ------hHHHHHHHHHcCCC-CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 ------TIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 ------~~~~~~~~~~~~l~-~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ..++.++++.+++. ....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus        99 ~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  156 (263)
T 2pjz_A           99 ELKGLDRDLFLEMLKALKLGEEILR--RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF  156 (263)
T ss_dssp             HHTCCCHHHHHHHHHHTTCCGGGGG--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred             hhcchHHHHHHHHHHHcCCChhHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence                  12356778888886 3222  223468999999999999999999999999993

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.83  E-value=4.6e-08  Score=95.71  Aligned_cols=164  Identities=16%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI  141 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i  141 (426)
                      .+....++.+|+|+|++|+||||++..|.+.....++++.+++.|+.-.    ..    ..  ....+.+ .....+-++
T Consensus        98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~----~a----~~--ql~~~~~-~~~~~~l~v  166 (320)
T 1zu4_A           98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA----GA----TQ--QLEEWIK-TRLNNKVDL  166 (320)
T ss_dssp             CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH----HH----HH--HHHHHHT-TTSCTTEEE
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch----hH----HH--HHHHHHh-ccccCCceE
Confidence            4444567789999999999999999999999888889999988875211    00    00  0001110 000111112


Q ss_pred             c-ccc-ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHH---HHHH---hcCCcEEEEEEeCCCCCCc
Q 014354          142 L-TSL-NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT---EAFA---STFPTVVTYVVDTPRSANP  213 (426)
Q Consensus       142 ~-~~~-~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~---~~~~---~~~~d~vl~VVDa~~~~~~  213 (426)
                      + ... ..... ..-.-.+..+...+++++||||||.....  ......+.   ..+.   ...+|.+++|+++..+   
T Consensus       167 ip~~~~~~~p~-~~~~~~l~~~~~~~yD~VIIDTpg~l~~~--~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---  240 (320)
T 1zu4_A          167 VKANKLNADPA-SVVFDAIKKAKEQNYDLLLIDTAGRLQNK--TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---  240 (320)
T ss_dssp             ECCSSTTCCHH-HHHHHHHHHHHHTTCSEEEEECCCCGGGH--HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---
T ss_pred             EeCCCCCCCHH-HHHHHHHHHHHhcCCCEEEEcCCCccccc--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---
Confidence            2 100 00010 01111233334578999999999985531  11111111   1121   2347899999999743   


Q ss_pred             hhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ...+    .....+...-...=+|+||+|....
T Consensus       241 ~~~l----~~~~~~~~~~~i~GvVltk~d~~~~  269 (320)
T 1zu4_A          241 QNGV----IQAEEFSKVADVSGIILTKMDSTSK  269 (320)
T ss_dssp             HHHH----HHHHHHTTTSCCCEEEEECGGGCSC
T ss_pred             HHHH----HHHHHHhhcCCCcEEEEeCCCCCCc
Confidence            1211    1111122111123488999997543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.83  E-value=1.1e-08  Score=95.95  Aligned_cols=115  Identities=12%  Similarity=0.129  Sum_probs=77.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhh-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRD-  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~-  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..           +...++...+    .+++ 
T Consensus        22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en  101 (240)
T 1ji0_A           22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence            34455566788899999999999999999999998877777766543310           1122221110    0011 


Q ss_pred             --------------hHHHHHHHHHcC-CCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          123 --------------TIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       123 --------------~~~~~~~~~~~~-l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                    ...+.++++.++ +.....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       102 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt  167 (240)
T 1ji0_A          102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK--QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS  167 (240)
T ss_dssp             HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT--SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence                          113455677773 543222  123358999999999999999999999999993

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.81  E-value=1.3e-08  Score=100.90  Aligned_cols=114  Identities=18%  Similarity=0.087  Sum_probs=80.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccc---------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAA---------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t---------  116 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..             +..+++..         
T Consensus        21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~  100 (353)
T 1oxx_K           21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (353)
T ss_dssp             EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence            34556667788899999999999999999999998887777766442210             11111111         


Q ss_pred             -ccch--h--------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          117 -NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       117 -~i~~--r--------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                       ++..  +        ...++.++++.+++......  ....||+|++|++.+++++..+++++|+|.|
T Consensus       101 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~LSGGq~QRvalAraL~~~P~lLLLDEP  167 (353)
T 1oxx_K          101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH--FPRELSGAQQQRVALARALVKDPSLLLLDEP  167 (353)
T ss_dssp             HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS--CGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence             1110  0        01245678899988653222  2346999999999999999999999999999

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.81  E-value=1.6e-08  Score=96.41  Aligned_cols=115  Identities=12%  Similarity=0.062  Sum_probs=80.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------cccccccc--------c---ccch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFA--------A---NIDI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------~v~~~~~~--------t---~i~~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.       .+...++.        +   ++..
T Consensus        23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~  102 (266)
T 2yz2_A           23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAF  102 (266)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHH
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHH
Confidence            3445566778889999999999999999999999877777776654321       01111111        0   1111


Q ss_pred             ------hh---hHHHHHHHHHcCCC--CCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          121 ------RD---TIRYKEVMKQFNLG--PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       121 ------r~---~~~~~~~~~~~~l~--~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                            ..   ..++.++++.+++.  ....  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  166 (266)
T 2yz2_A          103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD--RVPFFLSGGEKRRVAIASVIVHEPDILILDEPL  166 (266)
T ss_dssp             TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT--CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHhcCCHHHHHHHHHHHHHHcCcCCccccc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence                  00   12356788899886  3222  122358999999999999999999999999993

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.80  E-value=1.9e-08  Score=100.49  Aligned_cols=114  Identities=17%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccc--------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAA--------  116 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t--------  116 (426)
                      ..+.+....++.+++|+|++||||||||+.|.|...+..+.+.+.+.+..              +..+++..        
T Consensus        19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   98 (372)
T 1g29_1           19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV   98 (372)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred             EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence            34455666788899999999999999999999998887777766443210              11111111        


Q ss_pred             --ccch--h------h--hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          117 --NIDI--R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       117 --~i~~--r------~--~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                        ++..  +      .  ..++.++++.+++.....-  ....||+|++|++.+++++..+++++|+|.|
T Consensus        99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  166 (372)
T 1g29_1           99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEP  166 (372)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence              1110  0      0  1235677888988653322  2246999999999999999999999999999

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.79  E-value=8.6e-08  Score=97.15  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+|+++|++|+||||++..|.+.....++++.+++.|+.-.    ..    ..  ....+.+..++..    +.... 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~----aa----~~--qL~~~~~~~gv~v----~~~~~-  161 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP----AA----RE--QLRLLGEKVGVPV----LEVMD-  161 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH----HH----HH--HHHHHHHHHTCCE----EECCT-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc----hh----HH--HHHHhcccCCccE----EecCC-
Confidence            6778999999999999999999999888899999988875321    00    00  0111122333221    11000 


Q ss_pred             ccccHHHH-HHHH-HHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEV-ISLI-ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~-~~~~-~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      -... ..+ .... .+...+++++||||||.....  ..+...+........++.+++|+|+..+.   ...    ..+.
T Consensus       162 ~~~p-~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av----~~a~  231 (425)
T 2ffh_A          162 GESP-ESIRRRVEEKARLEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMTGQ---EAL----SVAR  231 (425)
T ss_dssp             TCCH-HHHHHHHHHHHHHTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHH----HHHH
T ss_pred             CCCH-HHHHHHHHHHHHHCCCCEEEEcCCCccccc--HHHHHHHHHhhhccCCceEEEEEeccchH---HHH----HHHH
Confidence            0000 111 1111 222467999999999975431  11122222233334588999999997542   211    1112


Q ss_pred             HHhhccCC-eEEEEecCCCCCh
Q 014354          226 ILYKTRLP-LVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~~~P-~IlVlNKiDl~~~  246 (426)
                      .+.. ..+ .-+|+||+|....
T Consensus       232 ~f~~-~l~i~GVIlTKlD~~~~  252 (425)
T 2ffh_A          232 AFDE-KVGVTGLVLTKLDGDAR  252 (425)
T ss_dssp             HHHH-HTCCCEEEEESGGGCSS
T ss_pred             HHHh-cCCceEEEEeCcCCccc
Confidence            1221 233 5679999997643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.78  E-value=1.4e-08  Score=95.89  Aligned_cols=113  Identities=19%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc----chhh---
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI----DIRD---  122 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i----~~r~---  122 (426)
                      .+.+....++.+++|+|++|||||||++.|+|...+. +.+.+.+.+..          +...++...+    .+++   
T Consensus        17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~   95 (249)
T 2qi9_C           17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT   95 (249)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHH
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHH
Confidence            3445556678899999999999999999999998777 77766543210          1111211110    1111   


Q ss_pred             --------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCC-------EEEEcCCC
Q 014354          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-------YVLVDTPG  175 (426)
Q Consensus       123 --------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~-------~~liDTPG  175 (426)
                              ..++.++++.+++.....  .....||+|+++++.+++++..+++       ++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt  161 (249)
T 2qi9_C           96 LHQHDKTRTELLNDVAGALALDDKLG--RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM  161 (249)
T ss_dssp             TTCSSTTCHHHHHHHHHHTTCGGGTT--SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred             HhhccCCcHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence                    234567888888864322  2234699999999999999999999       99999993

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.78  E-value=5.8e-09  Score=97.80  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=72.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec------cCccccccccccccchh---hhHHHHHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDIR---DTIRYKEV  129 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~------~d~~v~~~~~~t~i~~r---~~~~~~~~  129 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+      .+|.........++...   ......++
T Consensus        21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~  100 (237)
T 2cbz_A           21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSV  100 (237)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHH
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHH
Confidence            3445566778889999999999999999999999877766665432      22211000000011100   00112233


Q ss_pred             HHHc------CCCCCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          130 MKQF------NLGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       130 ~~~~------~l~~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+.+      ++.+.+-   +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  155 (237)
T 2cbz_A          101 IQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL  155 (237)
T ss_dssp             HHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            3333      3222110   11223458999999999999999999999999993

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.77  E-value=1.7e-08  Score=94.84  Aligned_cols=116  Identities=9%  Similarity=-0.036  Sum_probs=79.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------cccccccccc---------cc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAAN---------ID  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~---------i~  119 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.          .+..+++...         +.
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~   97 (243)
T 1mv5_A           18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT   97 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTT
T ss_pred             EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHh
Confidence            3445566778899999999999999999999999888888887755431          1122222211         11


Q ss_pred             hh-----hhHHHHHHHHHcCCCCCCCcc---------cccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 IR-----DTIRYKEVMKQFNLGPNGGIL---------TSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ~r-----~~~~~~~~~~~~~l~~ng~i~---------~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      ..     ....+.++++.+++.......         .....||+|+++++.+++++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEP  166 (243)
T 1mv5_A           98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA  166 (243)
T ss_dssp             SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            10     112345667777765432111         11235899999999999999999999999999

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.77  E-value=1.4e-07  Score=91.15  Aligned_cols=155  Identities=18%  Similarity=0.140  Sum_probs=86.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++.+++++|++|+||||++..|.+.....++++.+++.|+.-.   ..     .  .....+.+..++..-.+   ....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~---~~-----~--~ql~~~~~~~~l~~~~~---~~~~  163 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP---AA-----R--EQLRLLGEKVGVPVLEV---MDGE  163 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH---HH-----H--HHHHHHHHHHTCCEEEC---CTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH---hH-----H--HHHHHhcccCCeEEEEc---CCCC
Confidence            6779999999999999999999999888889999988875321   00     0  01112333444321100   0000


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      -...+ .+..+..+...+++++|+||||.....  ......+........++.+++|+|+..+   ....    .....+
T Consensus       164 ~p~~l-~~~~l~~~~~~~~D~viiDtpp~~~~d--~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~----~~~~~~  233 (295)
T 1ls1_A          164 SPESI-RRRVEEKARLEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMTG---QEAL----SVARAF  233 (295)
T ss_dssp             CHHHH-HHHHHHHHHHHTCCEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHH----HHHHHH
T ss_pred             CHHHH-HHHHHHHHHhCCCCEEEEeCCCCcccc--HHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHH----HHHHHH
Confidence            01111 122333333467999999999875431  1111222223333357888999998642   2211    111212


Q ss_pred             hhccCC-eEEEEecCCCCCh
Q 014354          228 YKTRLP-LVLAFNKTDVAQH  246 (426)
Q Consensus       228 ~~~~~P-~IlVlNKiDl~~~  246 (426)
                      .. ..+ .-+|+||+|....
T Consensus       234 ~~-~~~i~givlnk~d~~~~  252 (295)
T 1ls1_A          234 DE-KVGVTGLVLTKLDGDAR  252 (295)
T ss_dssp             HH-HTCCCEEEEECGGGCSS
T ss_pred             hh-cCCCCEEEEECCCCCcc
Confidence            21 233 4589999997643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.76  E-value=7.1e-09  Score=100.81  Aligned_cols=117  Identities=13%  Similarity=0.071  Sum_probs=77.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+++|+|++|||||||++.|++...+..+.+.+.+.+.          .+..+++.+.+   .+++.+ 
T Consensus        70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~  149 (306)
T 3nh6_A           70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR  149 (306)
T ss_dssp             EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH
T ss_pred             eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHH
Confidence            4455666788899999999999999999999999888877777765442          12222222211   122222 


Q ss_pred             ---------HHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ---------RYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ---------~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .+.++++..++...     .|.    -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus       150 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt  218 (306)
T 3nh6_A          150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT  218 (306)
T ss_dssp             TTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             hhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence                     22333444333210     011    1111358999999999999999999999999993

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.75  E-value=2e-07  Score=90.50  Aligned_cols=155  Identities=19%  Similarity=0.165  Sum_probs=83.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc-ccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT-SLN  146 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~-~~~  146 (426)
                      ++.+|+|+|++|||||||++.|.+...+.++.+.+.+.|..-.    .. +   .  ....+..+.++    +++. ...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~----~a-~---~--ql~~~~~~~~i----~~v~q~~~  166 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA----AG-G---T--QLSEWGKRLSI----PVIQGPEG  166 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST----TT-T---H--HHHHHHHHHTC----CEECCCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh----hH-H---H--HHHHHHHhcCc----eEEEeCCC
Confidence            5679999999999999999999999988899999888774210    00 0   0  00011111111    1111 000


Q ss_pred             cccc-cHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCchhhhhhH
Q 014354          147 LFTT-KFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNM  220 (426)
Q Consensus       147 ~ls~-~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~~~~~~~~  220 (426)
                      .+.. ...+.+.  .+...+++++++||+|.......  ..+. .....++.   ..++.+++++|+..+.....     
T Consensus       167 ~~p~~~v~~~v~--~~~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~-----  238 (304)
T 1rj9_A          167 TDSAALAYDAVQ--AMKARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTGQNGLE-----  238 (304)
T ss_dssp             CCHHHHHHHHHH--HHHHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBCTHHHH-----
T ss_pred             CCHHHHHHHHHH--HHHhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH-----
Confidence            0110 1111122  22234678999999998543211  1111 11122222   34788889999876543222     


Q ss_pred             HHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          221 LYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       221 l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                        .+..+.+..-..+|++||.|....
T Consensus       239 --~~~~~~~~~~~t~iivTh~d~~a~  262 (304)
T 1rj9_A          239 --QAKKFHEAVGLTGVIVTKLDGTAK  262 (304)
T ss_dssp             --HHHHHHHHHCCSEEEEECTTSSCC
T ss_pred             --HHHHHHHHcCCcEEEEECCccccc
Confidence              112222222346889999997643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.74  E-value=1e-08  Score=95.64  Aligned_cols=115  Identities=19%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec------cCcccccccccc--ccchh---hhHHHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAA--NIDIR---DTIRYK  127 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~------~d~~v~~~~~~t--~i~~r---~~~~~~  127 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+      .+|..  ++.+.  ++...   ...++.
T Consensus        24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~--~~~tv~enl~~~~~~~~~~~~  101 (229)
T 2pze_A           24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI--MPGTIKENIIFGVSYDEYRYR  101 (229)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCC--CSBCHHHHHHTTSCCCHHHHH
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcc--cCCCHHHHhhccCCcChHHHH
Confidence            3345556678889999999999999999999999877766665432      22221  11110  11110   011223


Q ss_pred             HHHHHcCCC------CCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          128 EVMKQFNLG------PNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       128 ~~~~~~~l~------~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ++++.+++.      +.+.   +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       102 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt  158 (229)
T 2pze_A          102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  158 (229)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence            333433332      1110   00112358999999999999999999999999994

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.72  E-value=2.9e-08  Score=94.92  Aligned_cols=115  Identities=15%  Similarity=0.115  Sum_probs=75.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +..+++...+   .+++.+ 
T Consensus        35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~  114 (271)
T 2ixe_A           35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA  114 (271)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence            44556667788899999999999999999999998887777766543310          1112221110   011111 


Q ss_pred             -------------------HHHHHHHHc--CCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 -------------------RYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 -------------------~~~~~~~~~--~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                         .+.++++.+  ++....+  .....||+|+++++.+++++..+++++|+|.|-
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~--~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  184 (271)
T 2ixe_A          115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG--ETGNQLSGGQRQAVALARALIRKPRLLILDNAT  184 (271)
T ss_dssp             TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC--GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc--CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                               112334444  3322111  122358999999999999999999999999993

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.71  E-value=3.1e-08  Score=94.51  Aligned_cols=115  Identities=12%  Similarity=0.014  Sum_probs=76.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc--ccCCceEEEeccCcc-----------ccccccccc--------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPA-----------VMTLPFAAN--------  117 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~--~~~~~~~~i~~~d~~-----------v~~~~~~t~--------  117 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|..  .+..+.+.+.+.+..           +...++...        
T Consensus        36 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~  115 (267)
T 2zu0_C           36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQ  115 (267)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHH
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHH
Confidence            44556667788899999999999999999999973  344555555443210           111111111        


Q ss_pred             --cch-h---------------h-hHHHHHHHHHcCCCC-CCCcccccc-cccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          118 --IDI-R---------------D-TIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       118 --i~~-r---------------~-~~~~~~~~~~~~l~~-ng~i~~~~~-~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                        +.. .               + ..++.++++.+++.. ....  ... .||+|+++++.+++++..+++++|+|.|-
T Consensus       116 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt  192 (267)
T 2zu0_C          116 FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESD  192 (267)
T ss_dssp             HHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS--BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC--CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence              000 0               0 123556788888853 2111  112 38999999999999999999999999993

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.71  E-value=2.1e-08  Score=94.56  Aligned_cols=117  Identities=15%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~--  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +..+++...+   .+++.  
T Consensus        25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~  104 (247)
T 2ff7_A           25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS  104 (247)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHh
Confidence            34455666788899999999999999999999998887777776553311          1112221111   01111  


Q ss_pred             --------HHHHHHHHHcCCCCCC-----C----cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 --------IRYKEVMKQFNLGPNG-----G----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 --------~~~~~~~~~~~l~~ng-----~----i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ..+.++++.+++....     |    +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt  173 (247)
T 2ff7_A          105 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  173 (247)
T ss_dssp             TTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             ccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                    1233445555543110     0    01112358999999999999999999999999993

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.70  E-value=8e-08  Score=92.99  Aligned_cols=151  Identities=18%  Similarity=0.123  Sum_probs=82.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++.+++|+|++||||||++..|.+.... .|.++.++..|+.-   + +.    .+.  ...+.+.+++...    .. 
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r---~-~a----~eq--L~~~~~~~gl~~~----~~-  167 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR---I-AA----VEQ--LKTYAELLQAPLE----VC-  167 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS---T-TH----HHH--HHHHHTTTTCCCC----BC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc---c-hH----HHH--HHHHHHhcCCCeE----ec-
Confidence            35679999999999999999999998875 56788888887631   0 10    111  1111222222111    00 


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                         ... .. +..+-+...+++++|+||||.....  ......+...+....++-+++|+|+.++....      ..++.
T Consensus       168 ---~~~-~~-l~~al~~~~~~dlvIiDT~G~~~~~--~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~------~~~~~  234 (296)
T 2px0_A          168 ---YTK-EE-FQQAKELFSEYDHVFVDTAGRNFKD--PQYIDELKETIPFESSIQSFLVLSATAKYEDM------KHIVK  234 (296)
T ss_dssp             ---SSH-HH-HHHHHHHGGGSSEEEEECCCCCTTS--HHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH------HHHTT
T ss_pred             ---CCH-HH-HHHHHHHhcCCCEEEEeCCCCChhh--HHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH------HHHHH
Confidence               011 11 1122223467999999999985431  11111222222222367789999987543211      11122


Q ss_pred             HHhhccCCeEEEEecCCCCCh
Q 014354          226 ILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      .+...+ ..-+|+||+|....
T Consensus       235 ~~~~l~-~~giVltk~D~~~~  254 (296)
T 2px0_A          235 RFSSVP-VNQYIFTKIDETTS  254 (296)
T ss_dssp             TTSSSC-CCEEEEECTTTCSC
T ss_pred             HHhcCC-CCEEEEeCCCcccc
Confidence            222222 24577899997754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.69  E-value=2.3e-08  Score=94.40  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=72.6

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcc--cccCCceEEEeccCcc-----------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~--~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|.  ..+..+.+.+.+.+..           +...++...+    .++
T Consensus        19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   98 (250)
T 2d2e_A           19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIA   98 (250)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHH
T ss_pred             EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHH
Confidence            3445556678889999999999999999999997  4556666666543310           1112222111    001


Q ss_pred             h-------------------hHHHHHHHHHcCCC-CCCCccccccc-ccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 D-------------------TIRYKEVMKQFNLG-PNGGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ~-------------------~~~~~~~~~~~~l~-~ng~i~~~~~~-ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +                   ..++.++++.+++. ....  ..... ||+|++|++.+++++..+++++|+|.|
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP  170 (250)
T 2d2e_A           99 NFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS--RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDET  170 (250)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG--SBTTCC----HHHHHHHHHHHHHCCSEEEEECG
T ss_pred             HHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc--CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1                   11345678888874 2111  12234 899999999999999999999999999

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.67  E-value=5.8e-07  Score=87.15  Aligned_cols=160  Identities=21%  Similarity=0.179  Sum_probs=85.3

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI  141 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i  141 (426)
                      .+....++.+++|+|++|||||||++.|++...+.++.+.+.+.|..-.    ..    .+  ....+-.+.++    ++
T Consensus        93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~----~a----~~--ql~~~~~~~~i----~~  158 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA----AA----SD--QLEIWAERTGC----EI  158 (302)
T ss_dssp             CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH----HH----HH--HHHHHHHHHTC----EE
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccch----hH----HH--HHHHHHHhcCc----eE
Confidence            3444567889999999999999999999999888888888887663210    00    00  00001011111    11


Q ss_pred             cc-ccc-ccc-ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCc
Q 014354          142 LT-SLN-LFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANP  213 (426)
Q Consensus       142 ~~-~~~-~ls-~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~  213 (426)
                      +. ... .+. ....+.+..+  ...+.+..++||+|.......  ..+.. ....++.   ..++-+++|+|++.+.+.
T Consensus       159 v~q~~~~~~~~~~v~e~l~~~--~~~~~d~~lldt~gl~~~~~~~~~eLSk-qr~~iaral~~~P~e~lLvLDptsglD~  235 (302)
T 3b9q_A          159 VVAEGDKAKAATVLSKAVKRG--KEEGYDVVLCDTSGRLHTNYSLMEELIA-CKKAVGKIVSGAPNEILLVLDGNTGLNM  235 (302)
T ss_dssp             ECCC--CCCHHHHHHHHHHHH--HHTTCSEEEECCCCCSSCCHHHHHHHHH-HHHHHHTTSTTCCSEEEEEEEGGGGGGG
T ss_pred             EEecCCccCHHHHHHHHHHHH--HHcCCcchHHhcCCCCcchhHHHHHHHH-HHHHHHHhhccCCCeeEEEEeCCCCcCH
Confidence            11 000 011 0111222222  234578899999998653211  11111 1112222   236777889997777665


Q ss_pred             hhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      ....       ..+.+..-..+|+++|.|-..
T Consensus       236 ~~~~-------~~~~~~~g~t~iiiThlD~~~  260 (302)
T 3b9q_A          236 LPQA-------REFNEVVGITGLILTKLDGSA  260 (302)
T ss_dssp             HHHH-------HHHHHHTCCCEEEEECCSSCS
T ss_pred             HHHH-------HHHHHhcCCCEEEEeCCCCCC
Confidence            4321       222222223578899998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.63  E-value=5.4e-08  Score=92.43  Aligned_cols=116  Identities=15%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~--  123 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+ .+.+.+.+.+.          .+..+++...+   .+++.  
T Consensus        36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~  114 (260)
T 2ghi_A           36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNIL  114 (260)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHH
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHh
Confidence            3445566778889999999999999999999998754 56665544321          11222222111   11111  


Q ss_pred             --------HHHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 --------IRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 --------~~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                              ..+.++++.+++...     .+.    -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       115 ~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  183 (260)
T 2ghi_A          115 YGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT  183 (260)
T ss_dssp             TTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred             ccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence                    123344555554210     010    0112358999999999999999999999999993

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.62  E-value=6e-08  Score=102.96  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             CCCEEEEcCCCcccccch--h-chHHHHHHHHHh---cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354          165 HLDYVLVDTPGQIEIFTW--S-ASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~--~-~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl  238 (426)
                      .++++|+|+||+....+.  . .....+.+.+..   ....++++++++........    .+..+..+...+.+.|+|+
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~----~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE----ALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH----HHHHHHHHCSSCCSEEEEE
T ss_pred             CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH----HHHHHHHHhhcCCceEEEe
Confidence            478999999998663211  1 112333444333   23457777777543332211    2334444556678999999


Q ss_pred             ecCCCCChH
Q 014354          239 NKTDVAQHE  247 (426)
Q Consensus       239 NKiDl~~~~  247 (426)
                      ||+|++...
T Consensus       222 TK~Dlv~~g  230 (608)
T 3szr_A          222 TKPDLVDKG  230 (608)
T ss_dssp             ECGGGSSSS
T ss_pred             cchhhcCcc
Confidence            999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.61  E-value=9.7e-07  Score=87.55  Aligned_cols=161  Identities=20%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCc
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI  141 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i  141 (426)
                      .+....++.+++|+|++|||||||++.|.+...+.++.+.+.+.|..-.    ..    .+  ....+-.+.++    ++
T Consensus       150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~----~a----~e--ql~~~~~r~~i----~~  215 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRA----AA----SD--QLEIWAERTGC----EI  215 (359)
T ss_dssp             CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCH----HH----HH--HHHHHHHHHTC----EE
T ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccccc----ch----hH--HHHHHHHhcCe----EE
Confidence            3444567889999999999999999999999888888888887663210    00    00  00001111111    11


Q ss_pred             ccc-cc-ccc-ccHHHHHHHHHHHhcCCCEEEEcCCCcccccch--hchHHHHHHHHHh---cCCcEEEEEEeCCCCCCc
Q 014354          142 LTS-LN-LFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFAS---TFPTVVTYVVDTPRSANP  213 (426)
Q Consensus       142 ~~~-~~-~ls-~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~--~~~~~~l~~~~~~---~~~d~vl~VVDa~~~~~~  213 (426)
                      +.. .. .+. ....+.+..+  ...+.+++++||+|.......  ..+.. ....+..   ..++-+++|+|++.+.+.
T Consensus       216 v~q~~~~~~p~~tv~e~l~~~--~~~~~d~~lldt~Gl~~~~~~~~~eLSk-qr~~iaral~~~P~e~lLvLDpttglD~  292 (359)
T 2og2_A          216 VVAEGDKAKAATVLSKAVKRG--KEEGYDVVLCDTSGRLHTNYSLMEELIA-CKKAVGKIVSGAPNEILLVLDGNTGLNM  292 (359)
T ss_dssp             ECCSSSSCCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSTTCCSEEEEEEEGGGGGGG
T ss_pred             EEecccccChhhhHHHHHHHH--HhCCCHHHHHHhcCCChhhhhHHHHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCCH
Confidence            110 00 011 0111222222  234578899999998654211  11111 1111221   336778899997776665


Q ss_pred             hhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       214 ~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ....       ..+.+..-..+|+++|.|....
T Consensus       293 ~~~~-------~~~~~~~g~t~iiiThlD~~~~  318 (359)
T 2og2_A          293 LPQA-------REFNEVVGITGLILTKLDGSAR  318 (359)
T ss_dssp             HHHH-------HHHHHHTCCCEEEEESCTTCSC
T ss_pred             HHHH-------HHHHHhcCCeEEEEecCccccc
Confidence            4321       1222222235788999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.61  E-value=8.8e-08  Score=100.15  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=71.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc----ccchhh-------------hHHHHH
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA----NIDIRD-------------TIRYKE  128 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t----~i~~r~-------------~~~~~~  128 (426)
                      ..++.+++|+|++|||||||++.|+|...+..+.+.+.+..  +...|+..    ...+++             ...+.+
T Consensus       291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  368 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQI--LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE  368 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCC--EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCee--eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence            35778999999999999999999999988777666543222  11111110    000111             112345


Q ss_pred             HHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       129 ~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++.+++....  -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus       369 ~l~~~~l~~~~--~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT  413 (538)
T 3ozx_A          369 VTKRLNLHRLL--ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS  413 (538)
T ss_dssp             TTTTTTGGGCT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HHHHcCCHHHh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            56666665332  2233469999999999999999999999999993

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.59  E-value=1.5e-07  Score=99.68  Aligned_cols=106  Identities=18%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccCcccccccccc--ccc-h-h----hhHHHHHHHHH
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-R----DTIRYKEVMKQ  132 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d~~v~~~~~~t--~i~-~-r----~~~~~~~~~~~  132 (426)
                      .++.+++|+|++|||||||++.|+|...+..+.+      +++-.++... ...+.  ++. . +    ....+.++++.
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~l~~  458 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE-YEGTVYELLSKIDSSKLNSNFYKTELLKP  458 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            5678999999999999999999999876654443      2222222110 00010  110 1 0    11234567889


Q ss_pred             cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++....  -.....||+|+++++.+++++..+++++|+|.|-
T Consensus       459 ~~l~~~~--~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt  499 (607)
T 3bk7_A          459 LGIIDLY--DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS  499 (607)
T ss_dssp             HTCTTTT--TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             cCCchHh--cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9986432  2334469999999999999999999999999993

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.58  E-value=4.6e-08  Score=94.43  Aligned_cols=115  Identities=19%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe------ccCcccccccccc--ccc-hh-hhHHHHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM------NLDPAVMTLPFAA--NID-IR-DTIRYKE  128 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~------~~d~~v~~~~~~t--~i~-~r-~~~~~~~  128 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.      ..++..  ++.+.  ++. .. ....+.+
T Consensus        54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l--~~~tv~enl~~~~~~~~~~~~  131 (290)
T 2bbs_A           54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI--MPGTIKENIIGVSYDEYRYRS  131 (290)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCC--CSSBHHHHHHTTCCCHHHHHH
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCcc--CcccHHHHhhCcccchHHHHH
Confidence            445566677889999999999999999999999987765555432      222221  11110  110 00 0011223


Q ss_pred             HHHHcCCCC------CCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          129 VMKQFNLGP------NGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       129 ~~~~~~l~~------ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++.+++..      .+.   +-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  187 (290)
T 2bbs_A          132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  187 (290)
T ss_dssp             HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence            334333321      000   00012358999999999999999999999999993

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.57  E-value=3.3e-07  Score=96.82  Aligned_cols=117  Identities=11%  Similarity=0.054  Sum_probs=79.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~--  123 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.          .+...++.+.+   .+++.  
T Consensus       359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~  438 (582)
T 3b5x_A          359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA  438 (582)
T ss_pred             cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHh
Confidence            5566777788999999999999999999999999888888887766431          12222322211   11111  


Q ss_pred             ---------HHHHHHHHHcCCCCC-----CCcc----cccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------IRYKEVMKQFNLGPN-----GGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------~~~~~~~~~~~l~~n-----g~i~----~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               ..+.++++..++...     .|.-    .....+|+|++|++.+++++..+++++++|.|-
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt  508 (582)
T 3b5x_A          439 YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT  508 (582)
T ss_pred             ccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence                     123445555554311     0110    112358999999999999999999999999994

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.53  E-value=4.3e-08  Score=98.37  Aligned_cols=115  Identities=13%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhh---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRD---  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~---  122 (426)
                      ..+.++...++.+++|+|++||||||||+.|+|... ..+.+.+.+.+..          +..+++...+   .+++   
T Consensus        37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~  115 (390)
T 3gd7_A           37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD  115 (390)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHC
T ss_pred             eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhh
Confidence            455667778899999999999999999999999876 5666666554311          1111111100   0111   


Q ss_pred             ------hHHHHHHHHHcCCCCCCCcccc---------cccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 ------TIRYKEVMKQFNLGPNGGILTS---------LNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 ------~~~~~~~~~~~~l~~ng~i~~~---------~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                            ..++.++++.+++.........         ...||+|++|++.+++++..+++++|+|.|
T Consensus       116 ~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEP  182 (390)
T 3gd7_A          116 PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEP  182 (390)
T ss_dssp             TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESH
T ss_pred             hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                  1234567777776532111110         012899999999999999999999999999

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.51  E-value=5.9e-07  Score=95.12  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCce------EEEeccCcccccccccc--ccc------hhhhHHHHHHHHHcCC
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIR------GYVMNLDPAVMTLPFAA--NID------IRDTIRYKEVMKQFNL  135 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~------~~i~~~d~~v~~~~~~t--~i~------~r~~~~~~~~~~~~~l  135 (426)
                      .+++|+|++|||||||++.|.|...+..+.      ++.+..++.. ..+.+.  ++.      ........++++.+++
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l  457 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP-KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI  457 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCC-CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccc-cCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence            679999999999999999999987766542      2222111110 000000  000      0112234567888888


Q ss_pred             CCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       136 ~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .....  .....||+|++|++.+|+++..+++++|+|.|-
T Consensus       458 ~~~~~--~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT  495 (608)
T 3j16_B          458 DDIID--QEVQHLSGGELQRVAIVLALGIPADIYLIDEPS  495 (608)
T ss_dssp             TTTSS--SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             hhhhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            75432  233469999999999999999999999999993

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.51  E-value=3.3e-07  Score=96.94  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++.+.+   .+++.+ 
T Consensus       359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~  438 (587)
T 3qf4_A          359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK  438 (587)
T ss_dssp             EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHT
T ss_pred             eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHh
Confidence            34455667788999999999999999999999999888888877665421          2222222211   122222 


Q ss_pred             ---------HHHHHHHHcCCC------CCC---CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ---------RYKEVMKQFNLG------PNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ---------~~~~~~~~~~l~------~ng---~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .+.+.++..++.      |+|   -+-.....||+|++|++.+|+++..+++++++|.|-
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt  507 (587)
T 3qf4_A          439 WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT  507 (587)
T ss_dssp             TTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred             ccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence                     122233333321      110   011112358999999999999999999999999993

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.50  E-value=2.6e-07  Score=97.53  Aligned_cols=117  Identities=14%  Similarity=0.110  Sum_probs=77.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.          .+...++.+.+   .+++.+ 
T Consensus       357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~  436 (578)
T 4a82_A          357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL  436 (578)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHG
T ss_pred             eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHh
Confidence            4455566778899999999999999999999999888888777765441          12222222211   122222 


Q ss_pred             ---------HHHHHHHHcCCC------CCC---CcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ---------RYKEVMKQFNLG------PNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ---------~~~~~~~~~~l~------~ng---~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .+.+.++..++.      |+|   -+-.....+|+|++|++.+|+++..+++++++|.|-
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpt  505 (578)
T 4a82_A          437 LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT  505 (578)
T ss_dssp             GGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence                     223334443321      111   011112358999999999999999999999999993

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.48  E-value=3.6e-07  Score=95.56  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=70.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE-----------EeccCc------------c----cccccccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP------------A----VMTLPFAANI  118 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~-----------i~~~d~------------~----v~~~~~~t~i  118 (426)
                      ..++.+++|+|++|||||||++.|+|...+..+.+.           +.+.+.            .    .....+....
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            446789999999999999999999998766554330           000000            0    0000000000


Q ss_pred             ---chhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          119 ---DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       119 ---~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                         ..+.       ..++.++++.+++....  -.....||+|++|++.+|+++..+++++|+|.|-
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~--~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt  166 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLW--NKDANILSGGGLQRLLVAASLLREADVYIFDQPS  166 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence               0011       11356788888876432  2334569999999999999999999999999993

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=98.48  E-value=8.5e-07  Score=79.95  Aligned_cols=136  Identities=16%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             EEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        71 ~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      +|+|+ +..|+||||+.-.|.......+.++.+++.||.-+..         .         .++..+. +    +..+.
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~---------~---------~~~~~~~-~----~~~~~   59 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT---------N---------WSKAGKA-A----FDVFT   59 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH---------H---------HHTTSCC-S----SEEEE
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH---------H---------HHhcCCC-C----CcEEe
Confidence            56666 6799999999999998887788899999988642110         0         0111111 1    11122


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      ..-..+...+..+...++++||||||....        .....+  ..+|.+++++...... ...     ...+..+..
T Consensus        60 ~~~~~l~~~l~~l~~~yD~viiD~~~~~~~--------~~~~~l--~~ad~viiv~~~~~~~-~~~-----~~~~~~l~~  123 (206)
T 4dzz_A           60 AASEKDVYGIRKDLADYDFAIVDGAGSLSV--------ITSAAV--MVSDLVIIPVTPSPLD-FSA-----AGSVVTVLE  123 (206)
T ss_dssp             CCSHHHHHTHHHHTTTSSEEEEECCSSSSH--------HHHHHH--HHCSEEEEEECSCTTT-HHH-----HHHHHHHHT
T ss_pred             cCcHHHHHHHHHhcCCCCEEEEECCCCCCH--------HHHHHH--HHCCEEEEEecCCHHH-HHH-----HHHHHHHHH
Confidence            222444445555567799999999987542        122222  2268999999876543 211     122233332


Q ss_pred             -----ccCCeEEEEecCCCCC
Q 014354          230 -----TRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       230 -----~~~P~IlVlNKiDl~~  245 (426)
                           .+.++.+|+||++...
T Consensus       124 ~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A          124 AQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSCGGGCCEEEEEECSBCTTE
T ss_pred             HHHhCCCCcEEEEEeccCCCc
Confidence                 2467789999999543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.46  E-value=2.6e-07  Score=96.61  Aligned_cols=106  Identities=18%  Similarity=0.135  Sum_probs=69.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE------EEeccCcccccccccc--ccc-h-h----hhHHHHHHHHH
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-R----DTIRYKEVMKQ  132 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~------~i~~~d~~v~~~~~~t--~i~-~-r----~~~~~~~~~~~  132 (426)
                      .++.+++|+|++|||||||++.|+|...+..+.+      +++-.++... ...+.  .+. . +    ....+.++++.
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~l~~  388 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-YEGTVYELLSKIDASKLNSNFYKTELLKP  388 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            5678999999999999999999999877654433      2332222110 00010  000 0 0    01123455667


Q ss_pred             cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +++.+.  .-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       389 ~~l~~~--~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt  429 (538)
T 1yqt_A          389 LGIIDL--YDREVNELSGGELQRVAIAATLLRDADIYLLDEPS  429 (538)
T ss_dssp             TTCGGG--TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             cCChhh--hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            776432  22334569999999999999999999999999993

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.45  E-value=3e-07  Score=97.44  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTIR  125 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~~  125 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++.+.+   .+++.+.
T Consensus       371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~  450 (598)
T 3qf4_B          371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLK  450 (598)
T ss_dssp             CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHH
T ss_pred             ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHh
Confidence            55666777889999999999999999999999999888887777654421          2222222211   1222221


Q ss_pred             ----------HHHHHHHcCCC------CCCCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          126 ----------YKEVMKQFNLG------PNGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       126 ----------~~~~~~~~~l~------~ng~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                +.++++..++.      |+ |.-+    ....||+|++|++.+|+++..+++++++|.|-
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt  519 (598)
T 3qf4_B          451 YGNPGATDEEIKEAAKLTHSDHFIKHLPE-GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT  519 (598)
T ss_dssp             SSSTTCCTTHHHHHTTTTTCHHHHHTSTT-GGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred             cCCCCCCHHHHHHHHHHhCCHHHHHhccc-cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                      22222222211      11 1111    11348999999999999999999999999994

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.43  E-value=1.5e-06  Score=90.95  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=73.5

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE---------EEeccCc------------cccc-------
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AVMT-------  111 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~---------~i~~~d~------------~v~~-------  111 (426)
                      .+.+ ...++.+++|+|++|||||||++.|.|...+..+.+         .+.+.+.            .+..       
T Consensus        39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~  117 (538)
T 1yqt_A           39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDL  117 (538)
T ss_dssp             ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGG
T ss_pred             cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            3444 457888999999999999999999999876654431         0000000            0000       


Q ss_pred             cccccccchhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          112 LPFAANIDIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       112 ~~~~t~i~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+........+       ..++.++++.+++.....  .....||+|+++++.+|+++..+++++|+|.|-
T Consensus       118 ~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~--~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT  186 (538)
T 1yqt_A          118 IPKAVKGKVIELLKKADETGKLEEVVKALELENVLE--REIQHLSGGELQRVAIAAALLRNATFYFFDEPS  186 (538)
T ss_dssp             SGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTT--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             cchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            00000000111       124567899999865332  233469999999999999999999999999993

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.41  E-value=2.9e-07  Score=97.24  Aligned_cols=117  Identities=12%  Similarity=0.045  Sum_probs=77.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~--  123 (426)
                      ..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.          .+...++.+.+   .+++.  
T Consensus       359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~  438 (582)
T 3b60_A          359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA  438 (582)
T ss_dssp             EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence            4445566778899999999999999999999999888877777765431          12222222111   11111  


Q ss_pred             ---------HHHHHHHHHcCCCCC-----CCc----ccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------IRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------~~~~~~~~~~~l~~n-----g~i----~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .++.++++..++...     .|.    -.....+|+|++|++.+++++..+++++++|.|-
T Consensus       439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt  508 (582)
T 3b60_A          439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT  508 (582)
T ss_dssp             TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred             ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence                     123444555544210     011    0112358999999999999999999999999994

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.40  E-value=1.3e-06  Score=92.63  Aligned_cols=112  Identities=15%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE---------EEeccCc------------cccccccc----
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AVMTLPFA----  115 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~---------~i~~~d~------------~v~~~~~~----  115 (426)
                      +.+ ...++.+++|+|++|||||||++.|.|...+..+.+         .+.+.+.            .+...++.    
T Consensus       110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~  188 (607)
T 3bk7_A          110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLL  188 (607)
T ss_dssp             CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGG
T ss_pred             CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhc
Confidence            344 456888999999999999999999999876654431         0001000            00000000    


Q ss_pred             cc-c--chhh-------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          116 AN-I--DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       116 t~-i--~~r~-------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .. +  .+.+       ..++.++++.+++.....  .....||+|+++++.+|+++..+++++|+|.|-
T Consensus       189 ~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~--~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT  256 (607)
T 3bk7_A          189 PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD--RELHQLSGGELQRVAIAAALLRKAHFYFFDEPS  256 (607)
T ss_dssp             GGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGG--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred             hhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhC--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            00 0  0111       124567899999865322  233469999999999999999999999999993

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.40  E-value=1e-06  Score=85.33  Aligned_cols=104  Identities=16%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             CEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       167 ~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      .+++|||  +.++....   .     .....+|++|+|+|+..........   ..++..+...++|.|||+||+|+...
T Consensus        64 ~~~iwD~--qer~~~l~---~-----~~~~~ad~vilV~D~~~~~~s~~~l---~~~l~~~~~~~~piilv~NK~DL~~~  130 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLT---K-----PHVANVDQVILVVTVKMPETSTYII---DKFLVLAEKNELETVMVINKMDLYDE  130 (301)
T ss_dssp             SEEEEEE--CCCSCEET---T-----TTEESCCEEEEEECSSTTCCCHHHH---HHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred             eEEEEEE--ccccceee---c-----cccccCCEEEEEEeCCCCCCCHHHH---HHHHHHHHHCCCCEEEEEeHHHcCCc
Confidence            7899999  55542111   1     0124579999999998643221211   11222334468999999999999876


Q ss_pred             HhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcC-CceEEeecccCCCHHHHHHHHH
Q 014354          247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...    .....+..                      .+.. .+++++||++|.|+++++..+.
T Consensus       131 ~~v----~~~~~~~~----------------------~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          131 DDL----RKVRELEE----------------------IYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHH----HHHHHHHH----------------------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             hhH----HHHHHHHH----------------------HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            532    11111111                      1111 5799999999999999998874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.40  E-value=1.3e-07  Score=90.86  Aligned_cols=29  Identities=21%  Similarity=0.525  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      .+...|+++|.||+|||||+|+|++....
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~  146 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIA  146 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCcee
Confidence            35678999999999999999999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.37  E-value=7.5e-07  Score=102.40  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=95.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+|+|+|++|||||||++.|.+-..+..+.+.|.+.|.          .++.+|+.+.+   .+|+++ 
T Consensus      1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~ 1174 (1321)
T 4f4c_A         1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENII 1174 (1321)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHS
T ss_pred             ccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHh
Confidence            3445566778899999999999999999999999999999998877762          23334444322   134432 


Q ss_pred             -----------HHHHHHHHcCCC------CCCCcccc----cccccccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccch
Q 014354          125 -----------RYKEVMKQFNLG------PNGGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTW  182 (426)
Q Consensus       125 -----------~~~~~~~~~~l~------~ng~i~~~----~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~  182 (426)
                                 .+.++++..++.      |+ |.-+.    -.-||+|++|++.+|+++.++++++++|.|-- .+    
T Consensus      1175 ~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~-GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD---- 1249 (1321)
T 4f4c_A         1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPE-GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD---- 1249 (1321)
T ss_dssp             SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT-TTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT----
T ss_pred             ccCCCCCCCHHHHHHHHHHhCChHHHHcCcC-CCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC----
Confidence                       233445544432      21 21111    13489999999999999999999999999843 22    


Q ss_pred             hchHHHHHHHHHhcCCcEEEEEE
Q 014354          183 SASGAIITEAFASTFPTVVTYVV  205 (426)
Q Consensus       183 ~~~~~~l~~~~~~~~~d~vl~VV  205 (426)
                      ......+.+.+.....+..+++|
T Consensus      1250 ~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A         1250 TESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp             SHHHHHHHHHHTTTSSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEe
Confidence            22345566666655556555555

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.36  E-value=2.9e-07  Score=96.88  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..+|+|+|.||+|||||+|+|+|..
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            45789999999999999999999975

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.36  E-value=3.1e-07  Score=81.26  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc---ccccccccccch--hhhH-HHHHHHHHcCCCCCC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---VMTLPFAANIDI--RDTI-RYKEVMKQFNLGPNG  139 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~---v~~~~~~t~i~~--r~~~-~~~~~~~~~~l~~ng  139 (426)
                      ..++.+++|+|++|||||||++.+.+....       +..+..   +...++...+.-  .+.. .........+..   
T Consensus         6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~-------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---   75 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEV-------ISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKL---   75 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHHHHHHSCGGGE-------EEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHccCCeE-------EccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCe---
Confidence            457789999999999999999965432110       111100   000011110100  0000 011111122221   


Q ss_pred             CcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       140 ~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      -+.......+++.++++.+++++..++.++++|.|
T Consensus        76 ~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP  110 (171)
T 4gp7_A           76 TVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP  110 (171)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC
Confidence            11222234588899999999999999999999999

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.30  E-value=8.7e-07  Score=93.85  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEE-----------EeccCc-------------------cccccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP-------------------AVMTLPFA  115 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~-----------i~~~d~-------------------~v~~~~~~  115 (426)
                      ..++.+++|+|++||||||||+.|.|...+..+.+.           +.+...                   .+...+..
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA  179 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence            457889999999999999999999998877665431           000000                   00000000


Q ss_pred             c-----cc----ch---hhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          116 A-----NI----DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       116 t-----~i----~~---r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .     .+    ..   +...++.++++.+++.....  .....||+|++|++.+++++..+++++|+|.|-
T Consensus       180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt  249 (608)
T 3j16_B          180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK--RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS  249 (608)
T ss_dssp             CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG--SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred             hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC--CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            0     00    00   11134677889999864322  233469999999999999999999999999984

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.27  E-value=4.2e-06  Score=80.25  Aligned_cols=85  Identities=26%  Similarity=0.420  Sum_probs=60.1

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (426)
                      ..+|+++.|+|+.........     .+...+  .++|.++|+||+|++.......|.+.++                  
T Consensus        22 ~~aDvVl~VvDAr~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~------------------   76 (282)
T 1puj_A           22 KLIDIVYELVDARIPMSSRNP-----MIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE------------------   76 (282)
T ss_dssp             GGCSEEEEEEETTSTTTTSCH-----HHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH------------------
T ss_pred             hhCCEEEEEEeCCCCCccCCH-----HHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH------------------
Confidence            457999999999876554321     111112  5799999999999998654444443321                  


Q ss_pred             HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                             .  ...+++.+||.+|.|+.+|++.+.+.+..
T Consensus        77 -------~--~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           77 -------N--QGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             -------T--TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -------h--cCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence                   0  12479999999999999999988877664

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=98.24  E-value=1.1e-05  Score=77.98  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccc----cccchhhh----HHHHHHHHHc-----
Q 014354           68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA----ANIDIRDT----IRYKEVMKQF-----  133 (426)
Q Consensus        68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~----t~i~~r~~----~~~~~~~~~~-----  133 (426)
                      +..+|+|+|. +|+||||+.-.|.......+.++.+++.|+.-......    ...++.+.    ...++++...     
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l  182 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF  182 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence            4467888886 89999999999998877778899999998632111100    00011111    1111211111     


Q ss_pred             CCCCCCCccccc-ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354          134 NLGPNGGILTSL-NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA  211 (426)
Q Consensus       134 ~l~~ng~i~~~~-~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~  211 (426)
                      .+.+.+...... .++ +..+.+.+   ..+...++++|||||+.....     ..    ......+|.+|+|+......
T Consensus       183 ~vl~~g~~~~~~~ell~~~~l~~ll---~~l~~~yD~VIIDtpp~~~~~-----d~----~~l~~~ad~vilV~~~~~~~  250 (299)
T 3cio_A          183 DVITRGQVPPNPSELLMRDRMRQLL---EWANDHYDLVIVDTPPMLAVS-----DA----AVVGRSVGTSLLVARFGLNT  250 (299)
T ss_dssp             EEECCCSCCSCHHHHHTSHHHHHHH---HHHHHHCSEEEEECCCTTTCT-----HH----HHHGGGCSEEEEEEETTTSC
T ss_pred             EEEECCCCCCCHHHHhCHHHHHHHH---HHHHhCCCEEEEcCCCCchhH-----HH----HHHHHHCCEEEEEEcCCCCh
Confidence            111111111100 001 22333333   333466999999999975420     11    11224579999999875433


Q ss_pred             CchhhhhhHHHHHHHHhhccCCeE-EEEecCCCCC
Q 014354          212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ  245 (426)
Q Consensus       212 ~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~  245 (426)
                      -...     ......+.+.+.+++ +|+|++|...
T Consensus       251 ~~~~-----~~~~~~l~~~~~~~~GvVlN~~~~~~  280 (299)
T 3cio_A          251 AKEV-----SLSMQRLEQAGVNIKGAILNGVIKRA  280 (299)
T ss_dssp             TTHH-----HHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred             HHHH-----HHHHHHHHhCCCCeEEEEEeCCccCC
Confidence            2211     233444555666655 8899998654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.23  E-value=1.3e-06  Score=86.53  Aligned_cols=138  Identities=12%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP  233 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P  233 (426)
                      +..+.||||+|+..+.....      ..+  ..++++|||+|.+..-.       ...+. .....+..+.    ..+.|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~------~yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~-e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWI------HCF--EGVTAIIFCVALSDYDLVLAEDEEMNRMH-ESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGG------GGC--TTCSEEEEEEEGGGGGCEETTEEEEEHHH-HHHHHHHHHHTCGGGTTSE
T ss_pred             CeeEEEEeCCCchhhhHHHH------HHH--hcCCEEEEEEECccccccccccchhhhHH-HHHHHHHHHHcCccccCCc
Confidence            45688999999977521111      111  34789999999976422       11111 1122222222    24789


Q ss_pred             eEEEEecCCCCChHhHHHHHHHHHHHHHHhcc--ccchhhhHHHHhhhhHhh--hhcCCceEEeecccCCCHHHHHHHHH
Q 014354          234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDE--FYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      +|||+||+|+.......   ..+....+....  .......+.+....-+..  ......++.+||++|.||.++|.++.
T Consensus       263 iiLv~NK~DL~~~ki~~---~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~  339 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKK---SPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT  339 (353)
T ss_dssp             EEEEEECHHHHHHHHTT---SCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccc---cchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence            99999999974321000   000000000000  000000011100000000  01235688999999999999999998


Q ss_pred             HHHHH
Q 014354          310 ESAQE  314 (426)
Q Consensus       310 ~~~~~  314 (426)
                      ..+..
T Consensus       340 ~~i~~  344 (353)
T 1cip_A          340 DVIIK  344 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=98.20  E-value=1e-05  Score=77.74  Aligned_cols=160  Identities=14%  Similarity=0.172  Sum_probs=85.3

Q ss_pred             CCeEEEEEc-CCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHc-CCC--------C
Q 014354           68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF-NLG--------P  137 (426)
Q Consensus        68 ~~~~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~-~l~--------~  137 (426)
                      +..+|+|+| .+|+||||+.-.|.......+.++.+++.|+.-......  +++.....+.+++..- .+.        +
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~--~~~~~~~gl~~~l~~~~~~~~~i~~~~~~  168 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHEL--LGTNNVNGLSEILIGQGDITTAAKPTSIA  168 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHH--HTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHH--hCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence            345666666 589999999999998887778899999998642211100  0000111111111110 000        0


Q ss_pred             CCCccccc-------cc-ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          138 NGGILTSL-------NL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       138 ng~i~~~~-------~~-ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      +-.++..-       .+ -+..+.   .++..+...++++|||||+.....     ..    ......+|.+|+|+.+..
T Consensus       169 ~l~vl~~g~~~~~~~ell~~~~l~---~ll~~l~~~yD~VIIDtpp~~~~~-----da----~~l~~~aD~vllVv~~~~  236 (286)
T 3la6_A          169 KFDLIPRGQVPPNPSELLMSERFA---ELVNWASKNYDLVLIDTPPILAVT-----DA----AIVGRHVGTTLMVARYAV  236 (286)
T ss_dssp             TEEEECCCSCCSCHHHHHTSHHHH---HHHHHHHHHCSEEEEECCCTTTCT-----HH----HHHTTTCSEEEEEEETTT
T ss_pred             CEEEEeCCCCCCCHHHHhchHHHH---HHHHHHHhCCCEEEEcCCCCcchH-----HH----HHHHHHCCeEEEEEeCCC
Confidence            10011100       00 112233   333444566999999999875421     01    112245899999998754


Q ss_pred             CCCchhhhhhHHHHHHHHhhccCCe-EEEEecCCCCCh
Q 014354          210 SANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDVAQH  246 (426)
Q Consensus       210 ~~~~~~~~~~~l~~~~~l~~~~~P~-IlVlNKiDl~~~  246 (426)
                      ..-  .   ........+.+.+.++ -+|+||++....
T Consensus       237 ~~~--~---~~~~~~~~l~~~g~~~~GvVlN~v~~~~~  269 (286)
T 3la6_A          237 NTL--K---EVETSLSRFEQNGIPVKGVILNSIFRRAS  269 (286)
T ss_dssp             SBH--H---HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred             CcH--H---HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence            221  1   1123345556666664 489999986553

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.20  E-value=3.5e-07  Score=93.77  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=76.3

Q ss_pred             hhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCc-e-EEEeccCcc--ccc
Q 014354           36 KEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-R-GYVMNLDPA--VMT  111 (426)
Q Consensus        36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~-~-~~i~~~d~~--v~~  111 (426)
                      .+..+++..++.++.              ...++.+++|+|++|||||||++.|+|...+.++ . +.+.+ ++.  +..
T Consensus       119 i~~~nl~~~y~~vsl--------------~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~  183 (460)
T 2npi_A          119 KYIYNLHFMLEKIRM--------------SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFT  183 (460)
T ss_dssp             HHHHHHHHHHHHHHH--------------HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSS
T ss_pred             hhhhhhhehhhcCce--------------EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeee
Confidence            456777777765443              2346778999999999999999999999877767 6 55543 321  222


Q ss_pred             cccccc-------cchhhhH-------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHH--HhcCCCE-
Q 014354          112 LPFAAN-------IDIRDTI-------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER--RADHLDY-  168 (426)
Q Consensus       112 ~~~~t~-------i~~r~~~-------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~--~~~~~~~-  168 (426)
                      .|+...       +.+++.+             ++.++++.+|+....   . ...||+++++++.++.+  +..++++ 
T Consensus       184 vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~---~-~~~LSgGq~qrlalAra~rL~~~p~i~  259 (460)
T 2npi_A          184 VPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERIN---E-NKDLYLECISQLGQVVGQRLHLDPQVR  259 (460)
T ss_dssp             CSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGG---G-CHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             eccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCccc---c-hhhhhHHHHHHHHHHHHHHhccCcccC
Confidence            222210       0111100             011122223322211   1 23589999999999999  9999999 


Q ss_pred             ---EEEcCCCc
Q 014354          169 ---VLVDTPGQ  176 (426)
Q Consensus       169 ---~liDTPGi  176 (426)
                         +|+|+|+.
T Consensus       260 ~sGLlLDEpPt  270 (460)
T 2npi_A          260 RSGCIVDTPSI  270 (460)
T ss_dssp             HSCEEEECCCG
T ss_pred             cceEEEeCCcc
Confidence               99999543

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=98.19  E-value=1.9e-05  Score=75.10  Aligned_cols=161  Identities=16%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCcccccccc----ccccchhhh----HHHHHHHHHc-----
Q 014354           68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF----AANIDIRDT----IRYKEVMKQF-----  133 (426)
Q Consensus        68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~----~t~i~~r~~----~~~~~~~~~~-----  133 (426)
                      +..+|+|+|. +|+||||+.-.|.......+.++.+++.|+.-.....    ....++.+.    ...++++...     
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l  160 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL  160 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence            4467888875 8999999999999887778889999999853211110    000011111    1111111111     


Q ss_pred             CCCCCCCccccc-ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCC
Q 014354          134 NLGPNGGILTSL-NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA  211 (426)
Q Consensus       134 ~l~~ng~i~~~~-~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~  211 (426)
                      .+.+.|...... .++ +..+.+.+   ..+...++++|||||+.....    ....+.     ..+|.+|+|+.+....
T Consensus       161 ~vl~~g~~~~~~~ell~~~~l~~ll---~~l~~~yD~VIIDtpp~~~~~----d~~~l~-----~~aD~vilVv~~~~~~  228 (271)
T 3bfv_A          161 DVLTSGPIPPNPSELITSRAFANLY---DTLLMNYNFVIIDTPPVNTVT----DAQLFS-----KFTGNVVYVVNSENNN  228 (271)
T ss_dssp             EEECCCSCCSCHHHHHTSHHHHHHH---HHHHHHCSEEEEECCCTTTCS----HHHHHH-----HHHCEEEEEEETTSCC
T ss_pred             EEEECCCCCCCHHHHhChHHHHHHH---HHHHhCCCEEEEeCCCCchHH----HHHHHH-----HHCCEEEEEEeCCCCc
Confidence            111111111100 001 22333333   333456999999999875421    011111     2248899999875422


Q ss_pred             CchhhhhhHHHHHHHHhhccCCeE-EEEecCCCCC
Q 014354          212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ  245 (426)
Q Consensus       212 ~~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~  245 (426)
                        ..   ........+.+.+.+++ +|+|++|...
T Consensus       229 --~~---~~~~~~~~l~~~~~~~~GvVlN~~~~~~  258 (271)
T 3bfv_A          229 --KD---EVKKGKELIEATGAKLLGVVLNRMPKDK  258 (271)
T ss_dssp             --HH---HHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred             --HH---HHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence              11   11233445566677776 8999998643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.18  E-value=3.9e-06  Score=96.49  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTIR  125 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~~  125 (426)
                      ..+.+...+++..++|+|++|||||||++.|++...+..+.+.+.+.+.          .+...++.+-+   .+++++.
T Consensus       434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~  513 (1321)
T 4f4c_A          434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS  513 (1321)
T ss_dssp             EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred             eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence            3455566788899999999999999999999999999888887766541          12333333311   2344432


Q ss_pred             ----------HHHHHHHcCCC------CCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          126 ----------YKEVMKQFNLG------PNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       126 ----------~~~~~~~~~l~------~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                +.++++..++.      |+|-   +--.-..||+|++|++.+|+++..+++++|+|.|=
T Consensus       514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t  582 (1321)
T 4f4c_A          514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT  582 (1321)
T ss_dssp             TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence                      23333333321      2211   11111248999999999999999999999999983

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=98.18  E-value=1e-05  Score=74.83  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      +|+|.|..|+||||+.-.|.......+.++.+++.||.
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            46779999999999999999988888899999999984

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.18  E-value=9.9e-07  Score=83.77  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+++++|.||+|||||+|+|++...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5899999999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.16  E-value=3e-06  Score=97.14  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.          .+..+|+.+.+   .+++.+ 
T Consensus      1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A         1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp             BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred             ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence            5667777889999999999999999999999999888877777766542          12222322211   112211 


Q ss_pred             -----------HHHHHHHHcCCC------CCCCcc----cccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 -----------RYKEVMKQFNLG------PNGGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 -----------~~~~~~~~~~l~------~ng~i~----~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                 .+.+.++..++.      |. |.-    .....||+|++|++.+|+++..+++++|+|.|-
T Consensus      1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~-gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A         1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPD-KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTT-GGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred             ccCCCCCCCHHHHHHHHHHhCcHHHHHhCcc-ccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                       122223332221      11 111    111358999999999999999999999999994

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.14  E-value=2.9e-06  Score=97.35  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=75.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTIR  125 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~~  125 (426)
                      ..+.+...+++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..          +..+++.+.+   .+++.+.
T Consensus       406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~  485 (1284)
T 3g5u_A          406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR  485 (1284)
T ss_dssp             EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHH
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHh
Confidence            44556667888999999999999999999999998888887777654311          2222222211   1232221


Q ss_pred             ----------HHHHHHHcCCC------CC---CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          126 ----------YKEVMKQFNLG------PN---GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       126 ----------~~~~~~~~~l~------~n---g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                +.+.++..++.      |.   .-+-.....||+|++|++.+|+++..+++++|+|.|=
T Consensus       486 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt  554 (1284)
T 3g5u_A          486 YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT  554 (1284)
T ss_dssp             HHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence                      12222222211      11   0011112248999999999999999999999999993

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.13  E-value=7.2e-06  Score=79.36  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=55.5

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh---HHHHHHHHHHHHHHhccccchhhh
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST  272 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~  272 (426)
                      +.+|++++|+|+.+.........   .++..+...++|.|||+||+|+.....   ...+...+.               
T Consensus        78 ~naD~vliV~d~~~p~~s~~~l~---~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~---------------  139 (302)
T 2yv5_A           78 ANVDRVIIVETLKMPEFNNYLLD---NMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYR---------------  139 (302)
T ss_dssp             ESCCEEEEEECSTTTTCCHHHHH---HHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred             HhcCEEEEEEECCCCCCCHHHHH---HHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHH---------------
Confidence            55899999999986532222221   122234457899999999999987642   111211111               


Q ss_pred             HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                                .  ...+++++||++|.|+++|+..+.
T Consensus       140 ----------~--~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          140 ----------D--AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             ----------H--TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             ----------H--CCCeEEEEECCCCCCHHHHHhhcc
Confidence                      1  124799999999999999988764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.10  E-value=1.1e-06  Score=87.36  Aligned_cols=135  Identities=15%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP  233 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P  233 (426)
                      +..+.||||+|+..+...      ....+  ..++++|||+|.+..-.       ...+.. ....+..+.    ..+.|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~------w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~e-s~~~~~~i~~~~~~~~~p  270 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKR------WFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTE-SLNIFETIVNNRVFSNVS  270 (362)
T ss_dssp             TEEEEEEEECC-------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHH-HHHHHHHHHTCGGGTTSE
T ss_pred             CeEEEEEeccchhhhhhh------HHHHh--CCCCEEEEEEECccccccccccccccHHHH-HHHHHHHHhcchhhCCCC
Confidence            457899999999664210      00111  24789999999987321       112211 122222222    24789


Q ss_pred             eEEEEecCCCCChHhHHHHHHHHHHHHHHhcc---c-cc--hhhhHHHHhhhhHhhh--hcCCceEEeecccCCCHHHHH
Q 014354          234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISS---D-HS--YTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~---~-~~--~~~~~~~~~~~~l~~~--~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      +|||+||+|+.......      ..+...+..   . ..  ....+....-..+...  .....++.+||++|.||..+|
T Consensus       271 iILv~NK~DL~~~ki~~------~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF  344 (362)
T 1zcb_A          271 IILFLNKTDLLEEKVQV------VSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  344 (362)
T ss_dssp             EEEEEECHHHHHHHTTT------CCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEEChhhhhhhccc------cchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence            99999999975321000      000000000   0 00  0000000000000000  123568899999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      .++...+..
T Consensus       345 ~~v~~~i~~  353 (362)
T 1zcb_A          345 RDVKDTILH  353 (362)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.08  E-value=1.4e-06  Score=79.79  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=55.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe--ccC-----cccccccccc--cc-chhh-----------hHHH
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM--NLD-----PAVMTLPFAA--NI-DIRD-----------TIRY  126 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~--~~d-----~~v~~~~~~t--~i-~~r~-----------~~~~  126 (426)
                      ++.+++|+|++|||||||++.|+|. .+..+.+...  ...     ..+..+++..  ++ ....           ...+
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~   99 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVI   99 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4568999999999999999999998 6655444221  111     0122222221  11 1000           0011


Q ss_pred             HHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354          127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (426)
Q Consensus       127 ~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~  177 (426)
                      .++++.                .-|+++++.+++++..+++++|+|.|--.
T Consensus       100 ~~~l~~----------------glGq~qrv~lAraL~~~p~lllLDEPts~  134 (208)
T 3b85_A          100 PKLMEA----------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT  134 (208)
T ss_dssp             HHHHHT----------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred             HHHHHh----------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            112221                11788888899999999999999999543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.05  E-value=5.6e-06  Score=81.95  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=41.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC-------CCCchhhhhhHHHHHHHHh----hccCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR-------SANPMTFMSNMLYACSILY----KTRLP  233 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~-------~~~~~~~~~~~l~~~~~l~----~~~~P  233 (426)
                      ...+.||||+|+..+.....      ..+  ..++++|+|+|.+.       ..+...+... ......+.    ..+.|
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~------~y~--~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~p  252 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWI------HLF--EGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTS  252 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTG------GGC--TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCE
T ss_pred             ceeeEEEECCCchhhhHHHH------HHh--CCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCe
Confidence            46789999999987632111      011  23689999999862       1112222211 12222222    24789


Q ss_pred             eEEEEecCCCCC
Q 014354          234 LVLAFNKTDVAQ  245 (426)
Q Consensus       234 ~IlVlNKiDl~~  245 (426)
                      +|||+||+|+..
T Consensus       253 iiLvgNK~DL~~  264 (354)
T 2xtz_A          253 FMLFLNKFDIFE  264 (354)
T ss_dssp             EEEEEECHHHHH
T ss_pred             EEEEEECcchhh
Confidence            999999999743

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.04  E-value=7.4e-06  Score=73.05  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=26.6

Q ss_pred             cccccHHHHHHHHHH-----HhcCCCEEEEcCCCc
Q 014354          147 LFTTKFDEVISLIER-----RADHLDYVLVDTPGQ  176 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~-----~~~~~~~~liDTPGi  176 (426)
                      .+|+++++++.++.+     +..+++++|+|.+|-
T Consensus        76 ~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp  110 (178)
T 1ye8_A           76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK  110 (178)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST
T ss_pred             CcCHHHHHHHHHHhhccccccccCCCEEEEeCCCC
Confidence            478999999999996     889999999999663

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.04  E-value=4.7e-06  Score=92.09  Aligned_cols=112  Identities=15%  Similarity=0.151  Sum_probs=69.0

Q ss_pred             CCCcCCCCeEEEEEcCCCCCHHHHHHHHHccccc-----CCceEEEeccCcccccccccc---ccch--h-hhHHHHHHH
Q 014354           62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVMTLPFAA---NIDI--R-DTIRYKEVM  130 (426)
Q Consensus        62 ~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-----~~~~~~i~~~d~~v~~~~~~t---~i~~--r-~~~~~~~~~  130 (426)
                      .+....++.+++|+|++|||||||++.|.+....     ...+...+..++.. ..+..+   ++..  . ...++.+++
T Consensus       454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~-~~~~ltv~e~l~~~~~~~~~~v~~~L  532 (986)
T 2iw3_A          454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG-THSDTSVLDFVFESGVGTKEAIKDKL  532 (986)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC-CCTTSBHHHHHHTTCSSCHHHHHHHH
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc-cccCCcHHHHHHHhhcCHHHHHHHHH
Confidence            3444567789999999999999999999953221     01112222111100 001111   0100  0 023456788


Q ss_pred             HHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       131 ~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      +.+|+... -.-.....||+|+++++.+++++..+++++|+|.|-
T Consensus       533 ~~lgL~~~-~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT  576 (986)
T 2iw3_A          533 IEFGFTDE-MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT  576 (986)
T ss_dssp             HHTTCCHH-HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred             HHcCCChh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            89987421 011223458999999999999999999999999994

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.04  E-value=2.1e-06  Score=94.93  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=36.4

Q ss_pred             CCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        60 ~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      .+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.
T Consensus       690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~  733 (986)
T 2iw3_A          690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH  733 (986)
T ss_dssp             EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred             eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence            34455567788999999999999999999999988777777653

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=98.02  E-value=3.2e-05  Score=72.21  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=32.5

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .+|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG   42 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            355664 569999999999999988778899999999974

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=98.01  E-value=8.2e-05  Score=68.69  Aligned_cols=164  Identities=13%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHcccccC-CceEEEeccCcccccccccc-----ccchhhhHH----HHH-HHHHcC-
Q 014354           68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAA-----NIDIRDTIR----YKE-VMKQFN-  134 (426)
Q Consensus        68 ~~~~v~ii-G~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t-----~i~~r~~~~----~~~-~~~~~~-  134 (426)
                      ++.+|+|+ +..|+||||+.-.|....... +.++.+++.||........-     ...+.+...    .+. ...... 
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   82 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ   82 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence            34556666 569999999999999988777 89999999997522221110     001111110    000 000000 


Q ss_pred             -CCCCCCccccccccc----ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          135 -LGPNGGILTSLNLFT----TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       135 -l~~ng~i~~~~~~ls----~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                       ..++-.++.....+.    -....+..++..+...++++|||||+.....        ....+  ..+|.+++|+....
T Consensus        83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~p~~~~~~--------~~~~l--~~ad~viiv~~~~~  152 (245)
T 3ea0_A           83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFGASIDHV--------GVWVL--EHLDELCIVTTPSL  152 (245)
T ss_dssp             EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHHHHCSEEEEEEESSCCTT--------HHHHG--GGCSEEEEEECSSH
T ss_pred             ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHHhhCCEEEEeCCCCCchH--------HHHHH--HHCCEEEEEecCcH
Confidence             001111111100000    0012223333344457999999999865421        11111  34799999988742


Q ss_pred             CCCchhhhhhHHHHHHHHhhcc---CCeEEEEecCCCCCh
Q 014354          210 SANPMTFMSNMLYACSILYKTR---LPLVLAFNKTDVAQH  246 (426)
Q Consensus       210 ~~~~~~~~~~~l~~~~~l~~~~---~P~IlVlNKiDl~~~  246 (426)
                          .. .......+..+...+   ...-+|+||++....
T Consensus       153 ----~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~  187 (245)
T 3ea0_A          153 ----QS-LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR  187 (245)
T ss_dssp             ----HH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred             ----HH-HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence                11 111122334444444   336789999986543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.00  E-value=8.4e-07  Score=86.44  Aligned_cols=107  Identities=17%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCC--ceEEEeccCccccccccc--ccc------c---hhhhHHHHHHHHH
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVMTLPFA--ANI------D---IRDTIRYKEVMKQ  132 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~--~~~~i~~~d~~v~~~~~~--t~i------~---~r~~~~~~~~~~~  132 (426)
                      ..++.+|+|+|++|||||||++.|.+...+..  ..+.++..++..-  +.+  .++      +   ..+...+.+.++.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~--~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~  164 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY--PNAELQRRNLMHRKGFPESYNRRALMRFVTS  164 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBC--CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCC--cccHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            45788999999999999999999999876542  3455555553221  110  000      0   0112334566666


Q ss_pred             cCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354          133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (426)
Q Consensus       133 ~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~  177 (426)
                      ++.+   ..-.....||+++++++.++.++..+++++|+|.|-..
T Consensus       165 l~~~---~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~  206 (312)
T 3aez_A          165 VKSG---SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVL  206 (312)
T ss_dssp             HHTT---CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTT
T ss_pred             hCCC---cccCCcccCChhhhhhhhhHHHhccCCCEEEECCcccc
Confidence            6611   11122345888888888777777788899999998654

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.96  E-value=0.00016  Score=67.99  Aligned_cols=42  Identities=26%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             CCCCeEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           66 KRKPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        66 ~~~~~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .+++.+|+|+ |..|+||||+.-.|..... .+.++.+++.||.
T Consensus        24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~   66 (267)
T 3k9g_A           24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ   66 (267)
T ss_dssp             --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            3455667664 5699999999999998887 8899999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.95  E-value=1.3e-05  Score=75.94  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=54.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++.+++|+|++|||||||++.|++...+. .+.+.+.+.+...  .+... +.+...       ..+++.         
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~~~~~-~~~v~q-------~~~gl~---------   83 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHK-KSIVNQ-------REVGED---------   83 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--CCCCS-SSEEEE-------EEBTTT---------
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--ecCCc-ceeeeH-------HHhCCC---------
Confidence            466789999999999999999999987665 6777776654321  11110 000000       001110         


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                         .  ...++.++.++..+++++++|.|-
T Consensus        84 ---~--~~l~~~la~aL~~~p~illlDEp~  108 (261)
T 2eyu_A           84 ---T--KSFADALRAALREDPDVIFVGEMR  108 (261)
T ss_dssp             ---B--SCHHHHHHHHHHHCCSEEEESCCC
T ss_pred             ---H--HHHHHHHHHHHhhCCCEEEeCCCC
Confidence               0  112567788888899999999996

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.94  E-value=7.1e-05  Score=70.42  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             eEEEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354           70 VIIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (426)
Q Consensus        70 ~~v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v  109 (426)
                      .+|+| .|..|+||||+.-.|.......+.++.+++.||..
T Consensus        19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            34555 46789999999999998877778899999999754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.92  E-value=4.2e-05  Score=74.96  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ++..++|+|++|||||||++.|++...+..+.+.+-+.+ .. ..+..     ++.+               +++.    
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~-e~-~~~~~-----~~~i---------------~~~~----  223 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE-EI-VFKHH-----KNYT---------------QLFF----  223 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC-CC-CCSSC-----SSEE---------------EEEC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee-cc-ccccc-----hhEE---------------EEEe----
Confidence            456799999999999999999999987777777665432 11 01100     0000               1111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCc
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi  176 (426)
                       .++++++..++.++..+++++++|.|--
T Consensus       224 -ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          224 -GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             -BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             -CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence             1678899999999999999999999864

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.91  E-value=1.7e-05  Score=80.81  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .+..+|+|+|++++|||||||+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45679999999999999999999986

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.91  E-value=9.3e-05  Score=67.37  Aligned_cols=129  Identities=14%  Similarity=0.102  Sum_probs=75.6

Q ss_pred             EEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           72 IIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        72 v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      |+| .+..|+||||+.-.|.......+ ++.+++.||.-+.         ..      ++..-.+ |.       ..++.
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~---------~~------~~~~~~l-~~-------~vi~~   58 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA---------TG------WGKRGSL-PF-------KVVDE   58 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH---------HH------HHHHSCC-SS-------EEEEG
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH---------HH------HhcCCCC-Cc-------ceeCH
Confidence            444 57899999999999998877777 9999998874210         11      1111000 00       11221


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      .      .+..+...++++|||||+. ...        .....+  ..+|.+|+++....    .... .....+..+..
T Consensus        59 ~------~l~~l~~~yD~viiD~p~~~~~~--------~~~~~l--~~aD~viiv~~~~~----~~~~-~~~~~~~~l~~  117 (209)
T 3cwq_A           59 R------QAAKYAPKYQNIVIDTQARPEDE--------DLEALA--DGCDLLVIPSTPDA----LALD-ALMLTIETLQK  117 (209)
T ss_dssp             G------GHHHHGGGCSEEEEEEECCCSSS--------HHHHHH--HTSSEEEEEECSSH----HHHH-HHHHHHHHHHH
T ss_pred             H------HHHHhhhcCCEEEEeCCCCcCcH--------HHHHHH--HHCCEEEEEecCCc----hhHH-HHHHHHHHHHh
Confidence            1      1222356799999999987 443        111222  34689999888742    1111 11222333333


Q ss_pred             -ccCCeEEEEecCCCCC
Q 014354          230 -TRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       230 -~~~P~IlVlNKiDl~~  245 (426)
                       .+.+..+|+|+++...
T Consensus       118 ~~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A          118 LGNNRFRILLTIIPPYP  134 (209)
T ss_dssp             TCSSSEEEEECSBCCTT
T ss_pred             ccCCCEEEEEEecCCcc
Confidence             2678889999999765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.89  E-value=1.6e-05  Score=75.42  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=54.9

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (426)
                      ..+|+++.|+|+..........   +   . +.  ++|.|+|+||+|++.......|.+.++.                 
T Consensus        20 ~~~D~vl~VvDar~P~~~~~~~---l---~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~~-----------------   73 (262)
T 3cnl_A           20 RLVNTVVEVRDARAPFATSAYG---V---D-FS--RKETIILLNKVDIADEKTTKKWVEFFKK-----------------   73 (262)
T ss_dssp             TTCSEEEEEEETTSTTTTSCTT---S---C-CT--TSEEEEEEECGGGSCHHHHHHHHHHHHH-----------------
T ss_pred             hhCCEEEEEeeCCCCCcCcChH---H---H-hc--CCCcEEEEECccCCCHHHHHHHHHHHHH-----------------
Confidence            4579999999998765543211   1   1 11  8999999999999987654445443320                 


Q ss_pred             HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHH
Q 014354          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (426)
Q Consensus       276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~  311 (426)
                                ...++ .+||.+|.|+..|++.+...
T Consensus        74 ----------~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 ----------QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             ----------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             ----------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence                      12356 89999999999998877543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.88  E-value=6.3e-05  Score=80.60  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             HHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCC--EEEEcCCC
Q 014354          130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPG  175 (426)
Q Consensus       130 ~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~--~~liDTPG  175 (426)
                      ++.+++.... .-.....||+|+++++.+|+++..+++  ++|+|.|-
T Consensus       186 l~~~gL~~~~-~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt  232 (670)
T 3ux8_A          186 LQNVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS  232 (670)
T ss_dssp             HHHTTCTTCC-TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred             HHHcCCchhh-hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence            6667765321 112234599999999999999999888  99999993

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.87  E-value=7e-05  Score=71.65  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             EEEEE---cCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354           71 IIIVV---GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (426)
Q Consensus        71 ~v~ii---G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v  109 (426)
                      +|+|+   +..|+||||+.-.|.......+.++.+++.||.-
T Consensus        36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~   77 (298)
T 2oze_A           36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA   77 (298)
T ss_dssp             CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            45555   4899999999999998877778899999999753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.84  E-value=6.6e-05  Score=80.47  Aligned_cols=47  Identities=13%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             HHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC---CEEEEcCC
Q 014354          127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTP  174 (426)
Q Consensus       127 ~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~---~~~liDTP  174 (426)
                      .+.+..+++... ..-.....||+|++|++.+|+++..++   +++|+|.|
T Consensus       524 ~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP  573 (670)
T 3ux8_A          524 LETLYDVGLGYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP  573 (670)
T ss_dssp             HHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST
T ss_pred             HHHHHHcCCchh-hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC
Confidence            455667776532 111223469999999999999998766   59999999

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.83  E-value=0.00016  Score=68.00  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v  109 (426)
                      .+|+|.|..|+||||+.-.|.......+.++.+++.||..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~   41 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence            3677789999999999999998887788899999999754

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.82  E-value=9.2e-05  Score=69.40  Aligned_cols=41  Identities=29%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        68 ~~~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      +..+|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   46 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ   46 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            44567776 578999999999999887777889999999974

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=97.82  E-value=0.0002  Score=66.93  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             EEEE-EcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           71 IIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        71 ~v~i-iG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      +|+| .|..|+||||+.-.|.......+.++.+++.|+.
T Consensus         4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (263)
T 1hyq_A            4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   42 (263)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4444 5789999999999999887777889999999874

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.81  E-value=2.1e-05  Score=76.93  Aligned_cols=135  Identities=16%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCC-------CCCCchhhhhhHHHHHHHHh----hccCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP-------RSANPMTFMSNMLYACSILY----KTRLP  233 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~-------~~~~~~~~~~~~l~~~~~l~----~~~~P  233 (426)
                      +..+.+|||+|+..+....      ...+  ..++++|+|+|.+       ...+...+... +..+..+.    ..++|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w------~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKW------IHCF--ENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSS  236 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTG------GGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCE
T ss_pred             ceeeEEEEcCCchhHHHHH------HHHh--CCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCce
Confidence            3567899999997642100      0111  2378999999775       22222222211 12222222    24789


Q ss_pred             eEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-------hcCCceEEeecccCCCHHHHHH
Q 014354          234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-------YKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       234 ~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      +||++||+|+.......   .   .+...+..-.+...........+...|       ...+.++.+||+.+.||..+|.
T Consensus       237 iiL~~NK~DL~~~ki~~---~---~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~  310 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMY---S---HLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA  310 (327)
T ss_dssp             EEEEEECHHHHHHHTTT---S---CGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhcc---c---hHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence            99999999975432000   0   000000000000000000000000000       1224578899999999999999


Q ss_pred             HHHHHHHH
Q 014354          307 AVEESAQE  314 (426)
Q Consensus       307 ~l~~~~~~  314 (426)
                      .+...+..
T Consensus       311 ~v~~~Il~  318 (327)
T 3ohm_A          311 AVKDTILQ  318 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.81  E-value=1.6e-05  Score=79.85  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=42.3

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC-------chhhhhhHHHHHHHHh----hccCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILY----KTRLP  233 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~-------~~~~~~~~l~~~~~l~----~~~~P  233 (426)
                      +..+.||||+|+..+....      ...+  ..++++|||+|.+..-.       ...+.. ...++..+.    ..++|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e-~~~~~~~i~~~~~~~~~p  286 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKW------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQE-ALNLFKSIWNNRWLRTIS  286 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGG------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHH-HHHHHHHHHTCTTCSSCC
T ss_pred             Cccceecccchhhhhhhhh------Hhhc--cCCCEEEEEEECcccccccccccccchHHH-HHHHHHHHHhcccCCCCe
Confidence            3568899999997752111      1111  24789999999976210       112221 122222222    24689


Q ss_pred             eEEEEecCCCC
Q 014354          234 LVLAFNKTDVA  244 (426)
Q Consensus       234 ~IlVlNKiDl~  244 (426)
                      +|||+||+|+.
T Consensus       287 iiLvgNK~DL~  297 (402)
T 1azs_C          287 VILFLNKQDLL  297 (402)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEEEChhhh
Confidence            99999999974

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.80  E-value=2.9e-05  Score=76.91  Aligned_cols=85  Identities=13%  Similarity=0.091  Sum_probs=50.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+...|+|+|++|||||||++.|++...+. ++.+..+...... ..+..                       .+.+...
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~-----------------------~~~v~q~  176 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESK-----------------------KCLVNQR  176 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCS-----------------------SSEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhcc-----------------------ccceeee
Confidence            355699999999999999999999987665 4555444332211 11100                       0111000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      ............++.++..+++++++|.|-
T Consensus       177 ~~~~~~~~~~~~La~aL~~~PdvillDEp~  206 (356)
T 3jvv_A          177 EVHRDTLGFSEALRSALREDPDIILVGEMR  206 (356)
T ss_dssp             EBTTTBSCHHHHHHHHTTSCCSEEEESCCC
T ss_pred             eeccccCCHHHHHHHHhhhCcCEEecCCCC
Confidence            000111222336777888999999999996

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.79  E-value=0.00025  Score=65.08  Aligned_cols=39  Identities=31%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .+|+|+ +..|+||||+.-.|.......+.++.+++.|+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            355555 568999999999999887777889999999874

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.71  E-value=5.4e-05  Score=74.35  Aligned_cols=27  Identities=11%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             CceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          288 LKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       288 ~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +.+..+||+.+.+|..+|..+...+..
T Consensus       302 iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          302 VYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            457899999999999999998877654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.71  E-value=8.9e-05  Score=73.71  Aligned_cols=85  Identities=21%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             CcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchhhhH
Q 014354          198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTSTL  273 (426)
Q Consensus       198 ~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~  273 (426)
                      ++++++|+|++....  .+.....   ..+  .++|.++|+||+|+.....    ..+|....   ..            
T Consensus        72 ~~lil~VvD~~d~~~--s~~~~l~---~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~---~~------------  129 (369)
T 3ec1_A           72 KALVVNIVDIFDFNG--SFIPGLP---RFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM---AE------------  129 (369)
T ss_dssp             CCEEEEEEETTCSGG--GCCSSHH---HHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH---HH------------
T ss_pred             CcEEEEEEECCCCCC--chhhHHH---HHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH---HH------------
Confidence            579999999986542  2222111   111  2789999999999987532    22222111   00            


Q ss_pred             HHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       274 ~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                        ..      -+...+++.+||++|.|+.+|++.+.+..
T Consensus       130 --~~------g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 --EL------GLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             --TT------TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             --Hc------CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence              00      01113689999999999999999987654

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.68  E-value=0.00034  Score=66.61  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v  109 (426)
                      .+|+|.|..|+||||+.-.|.......+.++.+++.||..
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~   42 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4677889999999999999998887778899999999753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.68  E-value=1e-05  Score=70.75  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      ...+++.+++|+|++|||||||++.|++.. +..+.+
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V   63 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV   63 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence            334677899999999999999999999987 654443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.66  E-value=6.5e-05  Score=68.47  Aligned_cols=29  Identities=38%  Similarity=0.444  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+++.+++|+|++|||||||++.|++...
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34677999999999999999999998543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.65  E-value=8e-05  Score=74.05  Aligned_cols=86  Identities=21%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             CCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchhhh
Q 014354          197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTST  272 (426)
Q Consensus       197 ~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~  272 (426)
                      .++++++|+|++...  ..+... +   ..+ ..++|.++|+||+|+.....    ..+|.....   .           
T Consensus        69 ~~~~il~VvD~~d~~--~~~~~~-l---~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~---~-----------  127 (368)
T 3h2y_A           69 SDALVVKIVDIFDFN--GSWLPG-L---HRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA---K-----------  127 (368)
T ss_dssp             SCCEEEEEEETTSHH--HHCCTT-H---HHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH---H-----------
T ss_pred             cCcEEEEEEECCCCc--ccHHHH-H---HHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH---H-----------
Confidence            357999999997521  111111 1   111 13789999999999986542    222221110   0           


Q ss_pred             HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                         ..      -+...+++.+||++|.|+.+|++.|.+..
T Consensus       128 ---~~------g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 ---QL------GLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             ---HT------TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---Hc------CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence               00      01123689999999999999999987654

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.60  E-value=0.012  Score=56.91  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=35.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ..++++.|.+|+||||+.-.|.......+.++.++..||+
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   53 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA   53 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3678888999999999999999887778999999999974

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.57  E-value=0.0004  Score=60.72  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++.+|+|+|++|||||||++.|.+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999998764

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.56  E-value=0.00041  Score=66.13  Aligned_cols=38  Identities=29%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      .+|+|+ +..|+||||+.-.|.......+.++.+++.||
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            356665 57999999999999988877888999999998

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.55  E-value=0.00051  Score=62.32  Aligned_cols=40  Identities=18%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      +++.+++|+|+||+|||||++.|++.....++.+.+++.+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            3567899999999999999999998766666666665543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.53  E-value=6.6e-05  Score=72.76  Aligned_cols=84  Identities=7%  Similarity=0.080  Sum_probs=54.7

Q ss_pred             hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh----HHHHHHHHHHHHHHhccccchh
Q 014354          195 STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYT  270 (426)
Q Consensus       195 ~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~----~~~~~~~~~~l~~~~~~~~~~~  270 (426)
                      .+.+|++++|+|+........++..   ++..+...++|.|||+||+|+.....    +..|.+.+..            
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~~i~r---~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~------------  148 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTALLDR---FLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN------------  148 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHH---HHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH------------
T ss_pred             HHhCCEEEEEEeCCCCCCCHHHHHH---HHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh------------
Confidence            3568999999999865554443321   22223457899999999999998743    2334332221            


Q ss_pred             hhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          271 STLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       271 ~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                                     ...+++.+||.+|.|+++|+..+
T Consensus       149 ---------------~g~~v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          149 ---------------IGYDVYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             ---------------HTCCEEECCHHHHTTCTTTGGGG
T ss_pred             ---------------CCCeEEEEecCCCCCHHHHHhhc
Confidence                           12468888888888887776544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.53  E-value=0.00036  Score=66.14  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ..++.+++|+|+||+|||||+..|++...
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34677999999999999999999998543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.52  E-value=2.8e-05  Score=75.40  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~   96 (426)
                      .++.+++|+|++|||||||+|.|++.....
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence            356799999999999999999999976543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.52  E-value=1.2e-05  Score=77.77  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=28.6

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.+...+++.+++|+|++|||||||++.|++..
T Consensus       118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            344556788899999999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.52  E-value=0.00039  Score=59.83  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCC
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~   97 (426)
                      ++..++|+|++|+|||||++.+.+.....+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g   64 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG   64 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            456799999999999999999999875543

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.52  E-value=0.00014  Score=72.93  Aligned_cols=28  Identities=11%  Similarity=-0.128  Sum_probs=26.1

Q ss_pred             ccccHHHHHHHHHHHhcCC--CEEEEcCCC
Q 014354          148 FTTKFDEVISLIERRADHL--DYVLVDTPG  175 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~--~~~liDTPG  175 (426)
                      +|+|.++++.++.++..++  +++|+|.|-
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt  325 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD  325 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            6999999999999999999  999999983

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.50  E-value=0.0007  Score=64.63  Aligned_cols=43  Identities=21%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEeccC
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLD  106 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~d  106 (426)
                      ....++.+++|+|+||+|||||++.|++..... +..+.++...
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            445677899999999999999999999987665 4366555443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.49  E-value=0.00014  Score=65.69  Aligned_cols=38  Identities=21%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      .+++.+++|+|+||+|||||+..|++   ..+..+.++...
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~   54 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE   54 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence            34567899999999999999999998   334455555443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.48  E-value=0.00013  Score=72.68  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEecc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNL  105 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~  105 (426)
                      .++..|+|+|++|||||||++.|++...+. .+.+.+++.
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~  173 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED  173 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence            456789999999999999999999987665 566666554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.45  E-value=4.9e-05  Score=69.75  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...+.+....++.+++|+|++|||||||++.|++..
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356677777788899999999999999999999976

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=97.41  E-value=0.01  Score=62.35  Aligned_cols=41  Identities=24%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ...++++.|.+|+||||+.-.|.......|.++.++..||.
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~   47 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            45678899999999999999999887778889999999963

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.38  E-value=0.00052  Score=62.58  Aligned_cols=90  Identities=8%  Similarity=0.021  Sum_probs=53.6

Q ss_pred             CcEEEEEEeCCCCCCchhhhhhHHHH-HHHHhh----ccCCeEEEEecC-CCCChHhHHHHHHHHHHHHHHhccccchhh
Q 014354          198 PTVVTYVVDTPRSANPMTFMSNMLYA-CSILYK----TRLPLVLAFNKT-DVAQHEFALEWMQDFEVFQAAISSDHSYTS  271 (426)
Q Consensus       198 ~d~vl~VVDa~~~~~~~~~~~~~l~~-~~~l~~----~~~P~IlVlNKi-Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~  271 (426)
                      +|.+|||||+.......  ....+.. ..++..    .+.|++|+.||. |+...-...++.+.+.              
T Consensus       126 TdglIfVVDSsD~~R~e--ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~--------------  189 (227)
T 3l82_B          126 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--------------  189 (227)
T ss_dssp             CSEEEEEEECBTTCCCC--HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred             CCEEEEEeccccHhHHH--HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--------------
Confidence            59999999997543211  1111111 122221    467999999996 6755433333333221              


Q ss_pred             hHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       272 ~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                             +  ........+.++||++|+|+.+-++||...+
T Consensus       190 -------L--~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          190 -------L--NLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             -------G--GGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             -------C--cCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence                   0  0111234599999999999999999997654

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=97.38  E-value=0.0088  Score=58.76  Aligned_cols=41  Identities=29%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA  108 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~  108 (426)
                      ...++++.|..|+||||+.-.|.....  ..+.++.++..||.
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~   59 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA   59 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            346788999999999999999998877  78899999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.37  E-value=0.00011  Score=66.51  Aligned_cols=30  Identities=23%  Similarity=0.407  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~   96 (426)
                      .++.+|+|+|++|||||||++.|.+...+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~   49 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ   49 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            467899999999999999999999987644

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.37  E-value=0.013  Score=57.37  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ...++++.|.+|+||||+.-.|.......+.++.++..||.
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   65 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA   65 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            34567788999999999999999887778899999999974

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.36  E-value=0.00092  Score=69.43  Aligned_cols=101  Identities=20%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE-EEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~-~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      ..++.+++|+|++|+|||||+..|++.....+.++ ++...++..........+.    ....+ +...++..-.  ...
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g----~~~~~-~~~~g~~~~~--~~~  350 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWG----MDFEE-MERQNLLKIV--CAY  350 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS----CCHHH-HHHTTSEEEC--CCC
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC----CCHHH-HHhCCCEEEE--Eec
Confidence            34677999999999999999999999876655443 4433322100000000000    00111 1111111000  011


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      ...+|.+..+++.++.+...+++++|+| |
T Consensus       351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p  379 (525)
T 1tf7_A          351 PESAGLEDHLQIIKSEINDFKPARIAID-S  379 (525)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEE-C
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEc-C
Confidence            2347899999999999999999999999 7

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.35  E-value=0.00013  Score=64.42  Aligned_cols=41  Identities=27%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      +.++++|+|++|||||||+++|+......+.+++++..++.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            35689999999999999999999987777788888887764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.33  E-value=0.00014  Score=64.44  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      ..++++|+|++|||||||+++|++.....+.++.++..++
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            3568999999999999999999998666666777766654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.33  E-value=0.00047  Score=76.26  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHH
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRL   89 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L   89 (426)
                      ..++.+++|+|++|+||||||+.+
T Consensus       659 ~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          659 KDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHH
Confidence            345679999999999999999999

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.33  E-value=0.00017  Score=63.85  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .++.+++|+|+||||||||++.|.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.29  E-value=0.00093  Score=65.98  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHh---HHHHHHHHHHHHHHhccccchhhh
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST  272 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~  272 (426)
                      +..|++++| ++........++.   .++......++|.|||+||+|+.....   ...|...+.               
T Consensus       129 anvD~v~iv-~a~~P~~~~~~i~---r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~---------------  189 (358)
T 2rcn_A          129 ANIDQIVIV-SAILPELSLNIID---RYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR---------------  189 (358)
T ss_dssp             ECCCEEEEE-EESTTTCCHHHHH---HHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred             hcCCEEEEE-EeCCCCCCHHHHH---HHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH---------------
Confidence            557888865 5543222222211   112223356899999999999998753   222322221               


Q ss_pred             HHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       273 ~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                                .  ...+++.+||.+|.|+.+|...+
T Consensus       190 ----------~--~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          190 ----------N--IGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ----------T--TTCCEEECBTTTTBTHHHHHHHH
T ss_pred             ----------h--CCCcEEEEecCCCcCHHHHHHhc
Confidence                      0  12469999999999999887654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.28  E-value=0.0013  Score=63.70  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~  105 (426)
                      ..++-.++|.|+||+|||||+..++......+..+.++..
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            4567799999999999999999998765444455555443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.28  E-value=0.00014  Score=65.21  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+++|+|++|||||||++.|.+..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            46789999999999999999999874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.27  E-value=0.00013  Score=65.99  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=24.3

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...++.+++|+|++|||||||++.|++..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34567899999999999999999999976

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.27  E-value=0.0024  Score=62.56  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      ..++-.++|.|+||+|||||+..++......+..+.++...
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            45667899999999999999999988765566677666544

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.26  E-value=0.014  Score=56.90  Aligned_cols=40  Identities=30%  Similarity=0.286  Sum_probs=35.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ..++++.|..|+||||+.-.|.......+.++.++..||.
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~   55 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA   55 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4578889999999999999999888778899999999964

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.25  E-value=0.00059  Score=75.27  Aligned_cols=97  Identities=22%  Similarity=0.363  Sum_probs=52.0

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      .....+.+++|+|++|+||||||+.+.+..........+    |+-.     ..+.+.+.     ++..++...  .+..
T Consensus       668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v----pa~~-----~~i~~~d~-----i~~~ig~~d--~l~~  731 (918)
T 3thx_B          668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV----PAEE-----ATIGIVDG-----IFTRMGAAD--NIYK  731 (918)
T ss_dssp             ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB----SSSE-----EEEECCSE-----EEEEC----------
T ss_pred             ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc----cchh-----hhhhHHHH-----HHHhCChHH--HHHH
Confidence            444567899999999999999999986432110000000    0000     00000000     000111111  1122


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~  177 (426)
                      ..+.|+.++.+++.++.+ ...+.++|+|.||-.
T Consensus       732 ~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~G  764 (918)
T 3thx_B          732 GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRG  764 (918)
T ss_dssp             --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTT
T ss_pred             hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCC
Confidence            234578899999988876 678999999999853

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=97.25  E-value=0.0034  Score=61.84  Aligned_cols=40  Identities=30%  Similarity=0.326  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d~~  108 (426)
                      ..++++.|.+|+||||+.-.|.....  ..|.++.++..||+
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~   59 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA   59 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            35678889999999999999998887  78899999999975

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=97.24  E-value=0.0082  Score=54.31  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             EEEEEc-CCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           71 IIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        71 ~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      +|+|+| .+|+||||+.-.|.......|.++.++
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            466666 489999999999998877778788774

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.21  E-value=0.00025  Score=68.56  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d  106 (426)
                      .++.+|+|+|++|||||||++.|.+...  +.++.+.++..|
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            4678999999999999999999999765  566667665444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.21  E-value=0.00018  Score=63.76  Aligned_cols=26  Identities=15%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..++|+|++|||||||++.|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999999865

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.20  E-value=0.00013  Score=65.84  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..++|+|++|||||||++.|++..
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34579999999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.15  E-value=0.00065  Score=66.89  Aligned_cols=28  Identities=36%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++.+++|+|+||+|||||+..|++..
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999999875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.14  E-value=0.0029  Score=58.34  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=34.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      ..+|.+.|+||+||||++-.+.......|.++.++..||
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            467999999999999999888888877888888888776

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.13  E-value=0.00022  Score=65.54  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +++..++|+|++|||||||++.|++...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4667899999999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.12  E-value=0.0003  Score=63.35  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      .++.+|+|+|++|||||||++.|.+.....++.+.+.+.|
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            3567999999999999999999998776566666666554

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.12  E-value=0.00014  Score=66.86  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHH-ccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLV-CHT   93 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~-~~~   93 (426)
                      ..+.++...++.+++|+|++|||||||++.|. +..
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            44556666778899999999999999999999 764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.11  E-value=0.00026  Score=65.85  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=24.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+.+....++.+|+|+|++|||||||++.|.+..
T Consensus        15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             --------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45566667788899999999999999999998854

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=97.10  E-value=0.00059  Score=68.33  Aligned_cols=42  Identities=31%  Similarity=0.453  Sum_probs=25.5

Q ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHcccc------cCCceEEEeccCcc
Q 014354           67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA  108 (426)
Q Consensus        67 ~~~~~v~ii-G~~gaGKSTLln~L~~~~~------~~~~~~~i~~~d~~  108 (426)
                      .++.+|+|+ |..|+||||+.-.|.....      ..+.++.+++.||.
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~  157 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ  157 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence            345666666 7799999999999887764      35789999999974

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.06  E-value=0.0028  Score=57.92  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +++.+++|+|+||+|||||+..|++.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35678999999999999999999985

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.06  E-value=0.00029  Score=63.61  Aligned_cols=38  Identities=32%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      .++.+|+|+|++|||||||++.|.+...+   .+.++..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~   41 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH   41 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence            35678999999999999999999997532   344554444

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=97.06  E-value=0.0027  Score=61.80  Aligned_cols=40  Identities=30%  Similarity=0.300  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ..++++.|.+|+||||+.-.|.......|.++.++..||.
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            3567888999999999999999888788899999999875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.04  E-value=0.00034  Score=62.64  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++.+|+|+|++|||||||++.|.+..
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999999876

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.04  E-value=0.0016  Score=62.28  Aligned_cols=90  Identities=8%  Similarity=0.017  Sum_probs=54.7

Q ss_pred             CcEEEEEEeCCCCCCchhhhhhHHHHH-HHHh----hccCCeEEEEec-CCCCChHhHHHHHHHHHHHHHHhccccchhh
Q 014354          198 PTVVTYVVDTPRSANPMTFMSNMLYAC-SILY----KTRLPLVLAFNK-TDVAQHEFALEWMQDFEVFQAAISSDHSYTS  271 (426)
Q Consensus       198 ~d~vl~VVDa~~~~~~~~~~~~~l~~~-~~l~----~~~~P~IlVlNK-iDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~  271 (426)
                      +|.+|||||+.......  ....+..+ .++.    ..+.|++|..|| -|+...-...++.+.+.              
T Consensus       211 tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~--------------  274 (312)
T 3l2o_B          211 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--------------  274 (312)
T ss_dssp             CSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred             CCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--------------
Confidence            59999999997654321  11111111 2221    247899999997 47765433333333221              


Q ss_pred             hHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       272 ~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                             +  ........+.++||++|+|+.+-++||...+
T Consensus       275 -------L--~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          275 -------L--NLLNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             -------G--GGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             -------C--ccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence                   1  0111234599999999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.03  E-value=0.00036  Score=63.29  Aligned_cols=28  Identities=21%  Similarity=0.425  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +++..|+|+|++|||||||++.|++...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4567899999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.02  E-value=0.00036  Score=68.96  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc-cCCce
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIR   99 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~   99 (426)
                      ++.+++|+|++|||||||+|.|++... ...+.
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence            456899999999999999999999875 44333

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00053  Score=66.79  Aligned_cols=41  Identities=24%  Similarity=0.239  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc--CCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~--~~~~~~i~~~d  106 (426)
                      ..++.+|+|+|++|||||||++.|.+....  .++.+.++..|
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            346789999999999999999999887642  34566666555

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.02  E-value=0.00037  Score=63.09  Aligned_cols=28  Identities=14%  Similarity=0.425  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++..|+|+|++|||||||+++|++..
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3466789999999999999999999875

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.00  E-value=0.00036  Score=62.69  Aligned_cols=27  Identities=37%  Similarity=0.577  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++.+|+|+|++|||||||++.|.+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456799999999999999999998865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.99  E-value=0.00048  Score=60.96  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      .++.+|+|+|++||||||+.+.|.......++.+.++
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            4678899999999999999999998876555554443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.99  E-value=0.0017  Score=63.98  Aligned_cols=92  Identities=15%  Similarity=0.226  Sum_probs=55.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +++.++.|.|+||+|||||+.+++......++.+.++........            .    ....+++....-.+.   
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~------------~----~a~~lG~~~~~l~i~---  119 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP------------E----YAKKLGVDTDSLLVS---  119 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH------------H----HHHHTTCCGGGCEEE---
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH------------H----HHHHcCCCHHHeEEe---
Confidence            356789999999999999999998776555666666655432210            0    122344332111111   


Q ss_pred             cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354          147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE  178 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e  178 (426)
                       -....++...++.++  ...++++|||.+...-
T Consensus       120 -~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          120 -QPDTGEQALEIADMLVRSGALDIIVIDSVAALV  152 (349)
T ss_dssp             -CCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred             -cCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence             022345555555544  3458999999998654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.98  E-value=0.00058  Score=68.94  Aligned_cols=40  Identities=28%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      .++..++|+|++||||||||+.|++...+..+.+.+++.+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            3567899999999999999999999887777777777654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.97  E-value=0.0046  Score=62.21  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...+..|+|+|+|||||||+.++|....
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4456789999999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.96  E-value=0.00046  Score=61.98  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ..++.+|+|+|++|||||||++.|.+....
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            346789999999999999999999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.94  E-value=0.00039  Score=67.00  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      .+.+++|+|++|||||||||.|.+...+..+.+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i  200 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  200 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence            456899999999999999999999876654443

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=96.92  E-value=0.0026  Score=63.44  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=32.9

Q ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHcccc------cCCceEEEeccCcc
Q 014354           67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA  108 (426)
Q Consensus        67 ~~~~~v~ii-G~~gaGKSTLln~L~~~~~------~~~~~~~i~~~d~~  108 (426)
                      .++.+|+|+ |..|+||||+.-.|.....      ..+.++.+++.||.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q  154 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ  154 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence            345666666 7799999999999987764      35789999999974

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.91  E-value=0.024  Score=57.32  Aligned_cols=40  Identities=15%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEecc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNL  105 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~  105 (426)
                      .+++-.++|.|+||+|||||+..++..... .+..+.++..
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            446678999999999999999999887543 3445555443

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=96.88  E-value=0.011  Score=54.36  Aligned_cols=160  Identities=13%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             eEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc-
Q 014354           70 VIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL-  147 (426)
Q Consensus        70 ~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~-  147 (426)
                      ..+.|.|. +|+|||++.-.|+......+.++....  |..+...+... .++   ..+-.....++...-..++...+ 
T Consensus         5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~-~~~---~~D~~~~~~~~~~~~~~~~~~~~~   78 (228)
T 3of5_A            5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSE-LCE---DVESILNAYKHKFTAAEINLISFN   78 (228)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSS-SBH---HHHHHHHHTTTSSCHHHHCSEEES
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCC-CCC---hHHHHHHhcCCCCChhhEEEEEEC
Confidence            56788887 999999999999988877777766542  21110000000 000   00001123333210000000000 


Q ss_pred             --c-----------cccHHHHHHHHHH-HhcCCCEEEEcCCCcc-cccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCC
Q 014354          148 --F-----------TTKFDEVISLIER-RADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN  212 (426)
Q Consensus       148 --l-----------s~~~~~~~~~~~~-~~~~~~~~liDTPGi~-e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~  212 (426)
                        .           .-..+.+...... +..+++++|||+||-. .+.........+...+    ..-+|+|+++..+.-
T Consensus        79 ~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l----~~pviLV~~~~~~~i  154 (228)
T 3of5_A           79 QAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKAL----QIPVLLVSAIKVGCI  154 (228)
T ss_dssp             SSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHH----TCCEEEEEECSTTHH
T ss_pred             CCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHc----CCCEEEEEcCCcchH
Confidence              0           0133444555554 5678999999999643 2222222223333222    234788888864321


Q ss_pred             chhhhhhHHHHHHHHhhccCCeE-EEEecCCCC
Q 014354          213 PMTFMSNMLYACSILYKTRLPLV-LAFNKTDVA  244 (426)
Q Consensus       213 ~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~  244 (426)
                      .     ........+...+.++. +|+||++-.
T Consensus       155 ~-----~~~~~~~~l~~~~~~i~GvIlN~~~~~  182 (228)
T 3of5_A          155 N-----HTLLTINELNRHNIKLAGWIANCNDSN  182 (228)
T ss_dssp             H-----HHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred             H-----HHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence            1     11223344556677764 789999754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.87  E-value=0.0069  Score=66.76  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCC---CEEEEcCCC
Q 014354          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG  175 (426)
Q Consensus       126 ~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~---~~~liDTPG  175 (426)
                      ..+++..+|++... +-.....||+|++|++.+|+++...+   .++|+|.|-
T Consensus       785 ~~~~L~~vGL~~~~-lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT  836 (916)
T 3pih_A          785 TLQVLHDVGLGYVK-LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT  836 (916)
T ss_dssp             HHHHHHHTTGGGSB-TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred             HHHHHHHcCCchhh-ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence            44567778875321 11122358999999999999997654   799999993

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.87  E-value=0.00085  Score=61.76  Aligned_cols=28  Identities=29%  Similarity=0.507  Sum_probs=25.1

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      ...++.+|+|.|+.|||||||++.|.+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457789999999999999999999987

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.85  E-value=0.0063  Score=61.80  Aligned_cols=41  Identities=12%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      -.++-.++|.|+||+|||||+-.++......+..+.++...
T Consensus       194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            45667899999999999999999887765456666666544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.85  E-value=0.00071  Score=66.91  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      .++..++|+|++|||||||++.|++...+..+.+.+-+
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~  210 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED  210 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence            45668999999999999999999999877777776653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.82  E-value=0.0016  Score=64.18  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      +++.++.|+|+||+|||||+.+++......++.+..+...
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            4567999999999999999999998876666666555443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.00066  Score=60.87  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=23.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+.+....++.+|+|+|++||||||+.+.|.+..
T Consensus        15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34445555567799999999999999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.80  E-value=0.0021  Score=70.26  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             HHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCC
Q 014354          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTP  174 (426)
Q Consensus       126 ~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTP  174 (426)
                      +.++++.+++.... .-.....||+|++|++.++.++..+   ++++|+|.|
T Consensus       710 ~~~~L~~~gL~~~~-l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEP  760 (842)
T 2vf7_A          710 ALDTLREVGLGYLR-LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEP  760 (842)
T ss_dssp             HHHHHHHTTCTTSB-TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECT
T ss_pred             HHHHHHHcCCCccc-ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence            45678888887631 1122345999999999999999885   699999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.80  E-value=0.00057  Score=60.56  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+++|+|++|||||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999986

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.79  E-value=0.00068  Score=62.93  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ++.+|+|+|++|||||||++.|..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999993

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.78  E-value=0.0006  Score=59.30  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+|+|+|++|||||||++.|.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            569999999999999999998864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.78  E-value=0.0042  Score=68.43  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             HHHHHHHcCCCC-CCCcccccccccccHHHHHHHHHHHhcC---CCEEEEcCCC
Q 014354          126 YKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG  175 (426)
Q Consensus       126 ~~~~~~~~~l~~-ng~i~~~~~~ls~~~~~~~~~~~~~~~~---~~~~liDTPG  175 (426)
                      ..++++.+++.. ..+  .....||+|++|++.++.++..+   ++++|+|.|-
T Consensus       825 ~~~~L~~~gL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT  876 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLG--QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  876 (972)
T ss_dssp             HHHHHHHTTCSSSBTT--CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred             HHHHHHHcCCCccccc--CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            346788888875 222  22235899999999999999875   4999999993

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.77  E-value=0.00071  Score=65.22  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI   98 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~   98 (426)
                      .+.+++|+|++|||||||+|.|+ ...+..+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G  193 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEELRTQ  193 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence            45689999999999999999999 6554433

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.76  E-value=0.011  Score=58.47  Aligned_cols=41  Identities=15%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEc-CCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           66 KRKPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG-~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      .+++.+|+|+| ..|+||||+.-.|.......+.++.+++.|
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            45667788875 899999999999988876678899999988

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.74  E-value=0.0019  Score=70.05  Aligned_cols=87  Identities=20%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccc-cCCceEEEeccCccc-cccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAV-MTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~-~~~~~~~i~~~d~~v-~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +.+++|+|++|+||||||+.+.+... +..+..  +   |+. ..+++...+           +..++...+  +..   
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~--v---pa~~~~i~~v~~i-----------~~~~~~~d~--l~~---  634 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF--V---PAEEAHLPLFDGI-----------YTRIGASDD--LAG---  634 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC--B---SSSEEEECCCSEE-----------EEECCC-----------
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCce--e---ehhccceeeHHHh-----------hccCCHHHH--HHh---
Confidence            56899999999999999999998653 222110  0   110 000000000           000111111  111   


Q ss_pred             cccccHHHHHHHHHHH--hcCCCEEEEcCCCc
Q 014354          147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQ  176 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi  176 (426)
                      .+++++.++..++..+  ..++.++|+|.||-
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr  666 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVLLDEVGR  666 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence            1356677788887777  77899999999974

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.71  E-value=0.00092  Score=59.20  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=24.3

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +...++.+|+|+|++||||||+.+.|...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33446678999999999999999999876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.70  E-value=0.0007  Score=60.74  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+++|+|++|||||||++.|++...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.68  E-value=0.002  Score=71.97  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceE-EEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~-~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.+++|+|++|+||||||+.+ |........+ +|.....         .+.+.+.+     +..+|...+  +....+.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~---------~l~v~d~I-----~~rig~~d~--~~~~~st  851 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVC---------RLTPIDRV-----FTRLGASDR--IMSGEST  851 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEE---------EECCCSBE-----EEECC-----------CH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcC---------CCCHHHHH-----HHHcCCHHH--Hhhchhh
Confidence            579999999999999999999 6543211111 1111100         00001110     001111111  1112234


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcc
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~  177 (426)
                      |+.++.+ +.++.+....+.++|+|.||-.
T Consensus       852 f~~em~~-~a~al~la~~~sLlLLDEp~~G  880 (1022)
T 2o8b_B          852 FFVELSE-TASILMHATAHSLVLVDELGRG  880 (1022)
T ss_dssp             HHHHHHH-HHHHHHHCCTTCEEEEECTTTT
T ss_pred             hHHHHHH-HHHHHHhCCCCcEEEEECCCCC
Confidence            6667776 5667777889999999999854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.68  E-value=0.00098  Score=65.61  Aligned_cols=40  Identities=15%  Similarity=0.031  Sum_probs=31.8

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      ....++.+++|+|++|||||||++.|++...+..+.+.++
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~  105 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALI  105 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence            3455788999999999999999999999976654444443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.00051  Score=60.66  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      .+++|+|++|||||||++.|++...+.+.+...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I   36 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV   36 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence            4799999999999999999999987764443333

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.63  E-value=0.012  Score=58.10  Aligned_cols=92  Identities=14%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +++.++.|.|+||+|||||..+++......+..+.++........            .    ....+++....-.+..  
T Consensus        61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~------------~----~a~~~g~~~~~l~i~~--  122 (356)
T 1u94_A           61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP------------I----YARKLGVDIDNLLCSQ--  122 (356)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH------------H----HHHHTTCCGGGCEEEC--
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH------------H----HHHHcCCChhheeeeC--
Confidence            356789999999999999999998776555666666655422210            0    1223443321100100  


Q ss_pred             cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354          147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE  178 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e  178 (426)
                        .....+...++..+  ...++++|||+++...
T Consensus       123 --~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~  154 (356)
T 1u94_A          123 --PDTGEQALEICDALARSGAVDVIVVDSVAALT  154 (356)
T ss_dssp             --CSSHHHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred             --CCCHHHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence              11233444444322  4578999999998765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.62  E-value=0.00089  Score=60.26  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|++|||||||.+.|....
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45679999999999999999998765

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.61  E-value=0.014  Score=57.76  Aligned_cols=92  Identities=15%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +++..+.|.|+||+|||||...++......++.+.++..+......                .+..+++....-.+..  
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~----------------~a~~~g~d~~~l~i~~--  133 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV----------------YARALGVNTDELLVSQ--  133 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----------------HHHHTTCCGGGCEEEC--
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH----------------HHHHcCCCHHHceeec--
Confidence            3566899999999999999999887765556677776665432110                1233443321111110  


Q ss_pred             cccccHHHHHHHHHHH--hcCCCEEEEcCCCccc
Q 014354          147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE  178 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~e  178 (426)
                        ....++...++..+  ...++++|||..+...
T Consensus       134 --~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~  165 (366)
T 1xp8_A          134 --PDNGEQALEIMELLVRSGAIDVVVVDSVAALT  165 (366)
T ss_dssp             --CSSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred             --CCcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence              12334444444433  2568999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.60  E-value=0.021  Score=57.98  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc-CCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~-~~~~~~i~~~d  106 (426)
                      ..++-.++|.|+||+|||||+..|+..... .+..+.++...
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            456779999999999999999999987654 34466665443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.60  E-value=0.00092  Score=58.75  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +..++|+|+||+|||||+++|.+...
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56799999999999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.59  E-value=0.0015  Score=67.74  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      ++..++|+|++|||||||+++|++...+..+.+.+-+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied  295 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED  295 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence            4556999999999999999999998866666665543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.55  E-value=0.00063  Score=69.77  Aligned_cols=44  Identities=18%  Similarity=0.076  Sum_probs=34.5

Q ss_pred             CCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc
Q 014354           61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (426)
Q Consensus        61 ~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~  105 (426)
                      ..+....+ .+++|+|++||||||||+.|.+...+..+.+.+.+.
T Consensus        22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~   65 (483)
T 3euj_A           22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT   65 (483)
T ss_dssp             EEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred             ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence            34444556 899999999999999999999998777666555443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.55  E-value=0.0015  Score=66.23  Aligned_cols=41  Identities=12%  Similarity=0.054  Sum_probs=33.6

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      ....++.+++|+|++|||||||++.|++...+..+.+.+.+
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G  192 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG  192 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence            44567889999999999999999999999877656555544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.51  E-value=0.0018  Score=58.17  Aligned_cols=28  Identities=39%  Similarity=0.483  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|+|+|++|||||||++.|.+..
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4456799999999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.0013  Score=59.00  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.+|+|+|++|||||||.+.|.+..
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.50  E-value=0.0019  Score=57.66  Aligned_cols=29  Identities=31%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...++.+|+|+|++||||||+.+.|....
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34566789999999999999999998653

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=96.49  E-value=0.041  Score=51.09  Aligned_cols=164  Identities=12%  Similarity=0.079  Sum_probs=85.5

Q ss_pred             CCCCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCcccccccc--ccccchhhhHHHHHHHHHc--CCCCCCC
Q 014354           66 KRKPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF--AANIDIRDTIRYKEVMKQF--NLGPNGG  140 (426)
Q Consensus        66 ~~~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~--~t~i~~r~~~~~~~~~~~~--~l~~ng~  140 (426)
                      .+....+.|.|. +|+|||++.-.|+......+.++....  |..+....  ....   +...+-+....+  ++.+.  
T Consensus        18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~~~~---D~~~~~~~~~~~~~g~~~~--   90 (242)
T 3qxc_A           18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAINHSS---DAHLFLQDNRLLDRSLTLK--   90 (242)
T ss_dssp             -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTCCCS---HHHHHHHHHHTTCTTCCHH--
T ss_pred             hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCCCCc---hHHHHHHHHHHHhCCCChH--
Confidence            445677888887 999999999999988877777776653  11110000  0011   111000000111  11110  


Q ss_pred             ccccccc---c-------------cccHHHHHHHHHHHhcCCCEEEEcCCCc-ccccchhchHHHHHHHHHhcCCcEEEE
Q 014354          141 ILTSLNL---F-------------TTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTY  203 (426)
Q Consensus       141 i~~~~~~---l-------------s~~~~~~~~~~~~~~~~~~~~liDTPGi-~e~~~~~~~~~~l~~~~~~~~~d~vl~  203 (426)
                      .++...+   .             .-..+.+......+...++++|||.||- ..+.........+.+.+    ..-+|+
T Consensus        91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l----~~pVIL  166 (242)
T 3qxc_A           91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL----KAKMLL  166 (242)
T ss_dssp             HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHH----TCEEEE
T ss_pred             HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHc----CCCEEE
Confidence            0000000   0             1134555666666678899999999964 33322222223333322    346888


Q ss_pred             EEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCC
Q 014354          204 VVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       204 VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~  245 (426)
                      |+++..+.-..     .+.....+.+.+.+.=+|+|+++-..
T Consensus       167 V~~~~lg~i~~-----~~lt~~~l~~~g~~~GvIlN~v~~~~  203 (242)
T 3qxc_A          167 ISHDNLGLIND-----CLLNDFLLKSHQLDYKIAINLKGNNT  203 (242)
T ss_dssp             EECCSTTHHHH-----HHHHHHHHHTSSSCEEEEECCCTTCC
T ss_pred             EEcCCCcHHHH-----HHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence            89987652111     12233445566777668999998554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.47  E-value=0.01  Score=64.66  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++.+++|+|++|+||||||+.|.+..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            456799999999999999999998864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.46  E-value=0.0025  Score=58.73  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      .++..|+|.|++||||||+++.|...... +..+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~   56 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV   56 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence            36789999999999999999999998765 4443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.45  E-value=0.0015  Score=56.29  Aligned_cols=20  Identities=45%  Similarity=0.853  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 014354           70 VIIIVVGMAGSGKTTFMHRL   89 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L   89 (426)
                      .+|+|+|+|||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.44  E-value=0.026  Score=55.10  Aligned_cols=51  Identities=12%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             cChhhhHHHHHHhhhhcccccccCcCCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354           33 ANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (426)
Q Consensus        33 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~   96 (426)
                      +...+.+.+...+.......             ....+.++|.|++|+|||||++.+.+.....
T Consensus        21 gr~~~~~~l~~~l~~~~~~~-------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           21 HREQQLQQLDILLGNWLRNP-------------GHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TCHHHHHHHHHHHHHHHHST-------------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHHHHcCC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            44556666666665543200             1122379999999999999999999876554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.44  E-value=0.0017  Score=59.07  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+|+|+|++||||||+.+.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.42  E-value=0.0017  Score=56.44  Aligned_cols=22  Identities=36%  Similarity=0.762  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+|+|+|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999987

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.42  E-value=0.0019  Score=56.66  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ++.+|+|+|++||||||+.+.|.+....
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5678999999999999999999886533

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.41  E-value=0.0018  Score=58.03  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.40  E-value=0.0019  Score=57.02  Aligned_cols=26  Identities=38%  Similarity=0.597  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|+|||||||+.+.|....
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.39  E-value=0.0016  Score=56.24  Aligned_cols=24  Identities=25%  Similarity=0.214  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+|+|+|++||||||+.+.|....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.38  E-value=0.0019  Score=56.33  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..|+|+|++||||||+.+.|....
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999998764

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=96.37  E-value=0.057  Score=50.41  Aligned_cols=157  Identities=17%  Similarity=0.130  Sum_probs=80.3

Q ss_pred             CCeEEEEEcC-CCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC-ccccc
Q 014354           68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSL  145 (426)
Q Consensus        68 ~~~~v~iiG~-~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~-i~~~~  145 (426)
                      ....+.|.|. +|+|||++.-.|+......+.++....  |..+.. ....   .+..   .+....++.+.-. ++...
T Consensus        25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK--Pv~~g~-~~~~---~D~~---~~~~~~g~~~~~~~~~~~~   95 (251)
T 3fgn_A           25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK--PVQTGT-ARGD---DDLA---EVGRLAGVTQLAGLARYPQ   95 (251)
T ss_dssp             SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE--EEECCG-GGTC---CHHH---HHHHHHCCCEEEEEEECSS
T ss_pred             CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe--eeecCC-CCCC---HHHH---HHHHHcCCCCCCCCeeECC
Confidence            4467888887 699999999999988877777765542  100000 0000   1111   1112233221000 00000


Q ss_pred             ----------ccc-cccHHHHHHHHHHHhcCCCEEEEcCCCcc-cccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCC
Q 014354          146 ----------NLF-TTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSAN  212 (426)
Q Consensus       146 ----------~~l-s~~~~~~~~~~~~~~~~~~~~liDTPGi~-e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~  212 (426)
                                .-. .-.++.+......+..+++++|||.||-. .+.... .....+.+    ....-+|+|+++..+.-
T Consensus        96 p~sP~~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~----~l~~pVILV~~~~~g~i  171 (251)
T 3fgn_A           96 PMAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAV----DVAAAALVVVTADLGTL  171 (251)
T ss_dssp             SSCHHHHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHH----HTTCEEEEEECSSTTHH
T ss_pred             CCChHHHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHH----HcCCCEEEEEcCCCccH
Confidence                      000 11344555555556678999999999643 221111 12222222    33457889999875421


Q ss_pred             chhhhhhHHHHHHHHhhccCCeE-EEEecCC
Q 014354          213 PMTFMSNMLYACSILYKTRLPLV-LAFNKTD  242 (426)
Q Consensus       213 ~~~~~~~~l~~~~~l~~~~~P~I-lVlNKiD  242 (426)
                      ...     +.....+...+.++. +|+||+.
T Consensus       172 ~~~-----~lt~~~l~~~g~~i~GvIlN~v~  197 (251)
T 3fgn_A          172 NHT-----KLTLEALAAQQVSCAGLVIGSWP  197 (251)
T ss_dssp             HHH-----HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             HHH-----HHHHHHHHhCCCCEEEEEEECCC
Confidence            111     223334455677765 6899984

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.33  E-value=0.0019  Score=56.80  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|+|||||||+.+.|....
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.31  E-value=0.0022  Score=59.97  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .++.+|+|+|++|||||||++.|...
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999999943

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.29  E-value=0.0017  Score=64.11  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=28.3

Q ss_pred             CCCcCCC--CeEEEEEcCCCCCHHHHHHHHHcccccC
Q 014354           62 SINFKRK--PVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (426)
Q Consensus        62 ~~~~~~~--~~~v~iiG~~gaGKSTLln~L~~~~~~~   96 (426)
                      ++....+  +.+++|+|++|||||||++.|.+...+.
T Consensus       161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3344445  7799999999999999999999987553

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.29  E-value=0.0029  Score=55.60  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      .+|+|+|++||||||+.+.|......
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46999999999999999999887543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.28  E-value=0.0016  Score=60.51  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++|+|+||+|||||+++|.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.28  E-value=0.0022  Score=56.28  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.+|+|+|++||||||+.+.|....
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.26  E-value=0.002  Score=57.63  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999998

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.26  E-value=0.0029  Score=56.81  Aligned_cols=28  Identities=29%  Similarity=0.438  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .++..|+|+|++||||||+.+.|.....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999987653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.22  E-value=0.0028  Score=56.58  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|+|+|+|||||||+.+.|....
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455689999999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.21  E-value=0.0029  Score=59.36  Aligned_cols=26  Identities=35%  Similarity=0.584  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|+|||||||+.+.|....
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998763

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.20  E-value=0.0026  Score=56.81  Aligned_cols=28  Identities=32%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ++..|+|.|++||||||+.+.|......
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            3568999999999999999999886543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.20  E-value=0.0028  Score=56.42  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|++||||||+.+.|....
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.18  E-value=0.0027  Score=57.36  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ++.+|+|+|++||||||+.+.|.+...
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            567899999999999999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.15  E-value=0.0031  Score=60.44  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      .++.+|+|+|++|||||||++.|.+....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            36789999999999999999999887654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.15  E-value=0.0024  Score=57.17  Aligned_cols=22  Identities=32%  Similarity=0.721  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |+|+||+|||||||+++|+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.13  E-value=0.014  Score=57.02  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .+++.++.|.|+||+|||||+..|+..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.12  E-value=0.0022  Score=60.62  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++|+|+||+|||||+++|.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.12  E-value=0.003  Score=55.82  Aligned_cols=26  Identities=46%  Similarity=0.544  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|++||||||+.+.|....
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.12  E-value=0.0031  Score=55.21  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|++||||||+.+.|....
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.12  E-value=0.0031  Score=55.46  Aligned_cols=26  Identities=38%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|.|||||||+.+.|....
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.11  E-value=0.0033  Score=57.59  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      +++..++|+|+||+|||||+..++......+..+.++..+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            3567899999999999999888876654455555555443

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.10  E-value=0.0033  Score=56.33  Aligned_cols=27  Identities=33%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ++.+|+|+|.+||||||+.+.|.....
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999987643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.10  E-value=0.0037  Score=57.31  Aligned_cols=28  Identities=39%  Similarity=0.463  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++.+|+|+|+|||||+|....|....
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566789999999999999999998765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.09  E-value=0.0014  Score=58.99  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEE
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY  101 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~  101 (426)
                      +|+|+|++||||||+++.|.......+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~   32 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            6899999999999999999987654444443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.08  E-value=0.0031  Score=57.23  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|+|||||||+.+.|....
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.07  E-value=0.022  Score=57.03  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHH
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLV   90 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~   90 (426)
                      ..++.+++|+|+||+|||||+..|+
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            3456799999999999999999765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.06  E-value=0.0033  Score=55.13  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..|+|+|++||||||+.+.|....
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.05  E-value=0.0032  Score=59.64  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHcccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ++|+|+||+|||||+++|.+...
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcC
Confidence            99999999999999999998753

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=96.05  E-value=0.0057  Score=60.28  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             EEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        71 ~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      +|+|+ +..|+||||+.-.|.......+.++.+++.||.
T Consensus         3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q   41 (361)
T 3pg5_A            3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ   41 (361)
T ss_dssp             EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence            45555 679999999999998887778899999999975

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.04  E-value=0.0042  Score=54.49  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.+|+|+|++||||||+.+.|....
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.02  E-value=0.0031  Score=55.25  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +++|+|++|||||||+.+|.....
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            789999999999999999987653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.02  E-value=0.0039  Score=55.37  Aligned_cols=26  Identities=38%  Similarity=0.571  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .++.+|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.01  E-value=0.0034  Score=55.69  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|++||||||+.+.|....
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999998864

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.00  E-value=0.055  Score=56.71  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ..++++.|.+|+||||+.-.|.......+.++.++..||.
T Consensus       327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~  366 (589)
T 1ihu_A          327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA  366 (589)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            3567789999999999988888887777889999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.00  E-value=0.004  Score=59.44  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++..|+|+|+||||||||.++|....
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.99  E-value=0.0047  Score=63.11  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ....+|+++|.|||||||+.++|....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.97  E-value=0.0026  Score=55.58  Aligned_cols=26  Identities=35%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|.|||||||+.+.|....
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999997653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.95  E-value=0.018  Score=55.68  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++.++.|.|+||+|||||+..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3456789999999999999999998763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.93  E-value=0.0036  Score=57.17  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|++||||||+.+.|....
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.87  E-value=0.0047  Score=57.32  Aligned_cols=26  Identities=31%  Similarity=0.230  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|+|||||||+.++|....
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.85  E-value=0.0053  Score=55.53  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ++.+|+|+|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999976

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.85  E-value=0.0051  Score=52.72  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +...+|+|++|+|||||+.+|.-..
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999997543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.82  E-value=0.0038  Score=56.74  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..|+|+|++||||||+.+.|....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.81  E-value=0.0039  Score=58.18  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++..|+|+|+|||||||+.+.|....
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999998764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.81  E-value=0.0098  Score=60.29  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+..+|+|+|+.++|||+|+|.|++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHHH
Confidence            3567899999999999999997764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.80  E-value=0.0051  Score=63.79  Aligned_cols=42  Identities=19%  Similarity=0.084  Sum_probs=32.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHH--HHcccccCCceEEEeccC
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHR--LVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~--L~~~~~~~~~~~~i~~~d  106 (426)
                      ..+++.+++|+|+||||||||++.  +.+...+..+.+++.+.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            455778999999999999999999  557665456666665544

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.79  E-value=0.0037  Score=65.23  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCc-eEEEec
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMN  104 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~-~~~i~~  104 (426)
                      .++.+|+|+|++|||||||++.|.+...+.++ .+.+++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD  405 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD  405 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence            46789999999999999999999998765543 444333

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.79  E-value=0.12  Score=52.84  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccC-CceEEEecc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNL  105 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~-~~~~~i~~~  105 (426)
                      ..++..++|.|+||+|||||+-.++...... +..+.++..
T Consensus       239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~  279 (503)
T 1q57_A          239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML  279 (503)
T ss_dssp             CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred             cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence            4566789999999999999999988776544 555655543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.77  E-value=0.0048  Score=54.57  Aligned_cols=25  Identities=40%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.+|+|+|++||||||+.+.|....
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.75  E-value=0.02  Score=55.51  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccC--CceEEEec
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMN  104 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~--~~~~~i~~  104 (426)
                      ++ ++.|.|+||+|||||+-+++......  ++.+..+.
T Consensus        28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId   65 (333)
T 3io5_A           28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD   65 (333)
T ss_dssp             SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            44 69999999999999987777654332  44444443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.72  E-value=0.0074  Score=54.66  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i  102 (426)
                      +..++|.|+||+|||||++++.......+..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~   85 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFY   85 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            4578999999999999999999876544444433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.72  E-value=0.023  Score=53.75  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..++|.|+||+|||||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.69  E-value=0.02  Score=53.69  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+..++|.|+||+|||+|++++.+..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34569999999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.68  E-value=0.0063  Score=60.48  Aligned_cols=29  Identities=28%  Similarity=0.163  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+++..++|+|+||+|||||++.|.+..
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34566789999999999999999999864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.67  E-value=0.00082  Score=62.14  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i  102 (426)
                      .+++|+|++|||||||+++|.+...+..+.+.+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~   60 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF   60 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence            357899999999999999999998776554433

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.67  E-value=0.0054  Score=55.27  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.64  E-value=0.0087  Score=53.25  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      ..+.|.|++|+|||+|+.+|.......+..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5689999999999999999998765544433

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.63  E-value=0.0053  Score=59.71  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++|+|+||+|||||++.|.+..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            458999999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.62  E-value=0.0054  Score=57.43  Aligned_cols=25  Identities=36%  Similarity=0.393  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.+|+|+|++||||||+.+.|.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5679999999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.61  E-value=0.0067  Score=55.67  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++..|+|+|++||||||+.+.|....
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            355689999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.61  E-value=0.0059  Score=55.07  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.55  E-value=0.0056  Score=53.32  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+.+.|....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.54  E-value=0.0045  Score=59.23  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      ++.+|+|.|++||||||+.+.|.......+..+.++..|
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D   42 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence            456899999999999999999987543223334455444

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.53  E-value=0.0071  Score=53.12  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|.+||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	9e-46
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-06
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	6e-05
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	5e-04
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	5e-04
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	7e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.001
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.003
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	0.004
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.004

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  156 bits (394), Expect = 9e-46
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           +I++ VG AGSGKTT       + +      YV NLD  V  LP+  +ID+R+ +  +E+
Sbjct: 1   MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEI 59

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189
           M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+E F +   G  +
Sbjct: 60  MREG-YGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 118

Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA---QH 246
            E        +V Y+ D      P  +     +A  I  +     + A NK D+    + 
Sbjct: 119 MENL---PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 175

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
           E   ++ +D +   A +  D S    +   +   + E    ++ + +S+ +  G E    
Sbjct: 176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 235

Query: 307 AVEE 310
              E
Sbjct: 236 LAYE 239

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 41/146 (28%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           ++     +G+GKTT + +L+    +R IR  ++      M +                  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190
              +      +  + +        + S ++     L  V      +I        GA   
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 191 EAFASTFPTVVTYVVDTPRSANPMTF 216
                    V+    D P + +    
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDVALL 149

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
           P +I++VG+   GKT    +L  +     +     N+ 
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 216 FMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN 275
           F      A +IL   R P V+A NK D        E     E F            T   
Sbjct: 107 FKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVY 166

Query: 276 SLSLALDE-------------FYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFME 317
            L   L E             F   +  + +S+++G GI      +   AQ+++ 
Sbjct: 167 ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR 221

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 66  KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
            + P +I++VG+ G+GK T   +L    + +  +  ++                      
Sbjct: 9   DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG--------------ADVYRPA 54

Query: 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185
             E ++Q        +                + +  ++ ++ ++VDT G+      +A 
Sbjct: 55  ALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAAL 114

Query: 186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226
              +   + +  P  VT V+D           S    A  I
Sbjct: 115 LEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKI 155

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 4/138 (2%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           +  VVG   SGKTT M + V        R   +            A  +  D++R++   
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG---GEPARPEGVDSVRHERA- 58

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190
                   G  L  L+L    +     L       LD VLV+   Q          +   
Sbjct: 59  GAVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEED 118

Query: 191 EAFASTFPTVVTYVVDTP 208
            A       +   +   P
Sbjct: 119 WASLQHLANIRAVIAWEP 136

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 6/120 (5%)

Query: 68  KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI--- 124
            P +++ VG  G+GK+TF+   +      ++    +      ++   AA    +  +   
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDN 72

Query: 125 ---RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181
                    +      + G+      F    ++       R          +   +  + 
Sbjct: 73  TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYR 132

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAANIDIRDTIRYK 127
            + + G  G GKTT +H+     +S  +       +        + F             
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL-----DYVLVDTPGQIEIFT 181
            V  +   G     +    +  T F+++   + R AD          ++D  G++E+F+
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98
          K KP ++ V+G  GSGK T    +V      ++
Sbjct: 3  KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
           +K  II V G +G+G +T  H      +   ++   +  D
Sbjct: 2   KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 41

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 15/79 (18%), Positives = 32/79 (40%)

Query: 65  FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI 124
           F  K + I+++G+  +GKTT +++L        I     N++            D+    
Sbjct: 8   FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 125 RYKEVMKQFNLGPNGGILT 143
           + + + + +  G  G I  
Sbjct: 68  KIRPLWRHYYTGTQGLIFV 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.86
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.81
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.81
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.79
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.78
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.75
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.73
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.72
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.7
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.69
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.69
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.69
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.68
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.68
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.68
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.68
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.68
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.67
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.66
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.65
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.65
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.65
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.65
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.62
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.62
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.61
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.61
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.58
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.53
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.53
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	99.49
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.45
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.37
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.24
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.2
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.19
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.18
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.18
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.15
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.14
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.13
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.13
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.12
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.11
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.08
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.05
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.03
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.03
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.98
d1okkd2	207	GTPase domain of the signal recognition particle r	98.97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.92
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.92
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.91
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.9
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.89
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.85
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.85
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.81
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.79
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.74
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.73
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.72
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.59
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.31
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.31
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	98.16
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.12
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	98.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.92
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.84
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.73
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.68
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.46
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.45
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.43
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.31
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.17
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.15
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.13
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.12
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.02
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.97
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.89
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.85
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.82
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.79
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.76
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.76
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.72
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.65
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.64
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.62
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.59
d1egaa2	113	GTPase Era C-terminal domain {Escherichia coli [Ta	96.58
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.56
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.52
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.43
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.43
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.41
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.34
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.3
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.28
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.27
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.26
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.19
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.19
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.17
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.16
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.15
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.13
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.13
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.1
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.1
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.09
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.09
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.0
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.99
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.94
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.94
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.9
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.9
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.83
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.83
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.83
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.79
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.7
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.65
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.55
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.54
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.53
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.34
d1wf3a2	118	GTPase Era C-terminal domain {Thermus thermophilus	95.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.27
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.13
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.08
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.99
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.92
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.69
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.67
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.67
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.66
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.65
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.64
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.56
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.51
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.47
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.38
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.31
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.18
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.97
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.96
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.89
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.85
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.85
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.72
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.5
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.38
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.11
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.08
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.91
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.75
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.54
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.52
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.36
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.09
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.85
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.8
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.99
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.78
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.69
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.62
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.51
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.19
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.18
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.89
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.73
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.73
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.05
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.19
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	85.45
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	84.97
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	84.06
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.51
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	80.37
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.15

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.95  E-value=2.4e-27  Score=220.31  Aligned_cols=238  Identities=27%  Similarity=0.400  Sum_probs=185.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|++|||||||+++|+.+. ..++.+++++.||++...++...++.+..+.++..+... +.++++.+++...+.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~-~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG-YGPNGAIVESYDRLM   78 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH-TTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT-CCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH-hhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhh-hccCCchhhhhHhHH
Confidence            379999999999999999999876 467789999999999999988888888887777777655 444444444445567


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      ..+.+............+++++||||+.++..+......+.   .....+++++++|+..+..++.+....+.......+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~---~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~  155 (244)
T d1yrba1          79 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM---ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR  155 (244)
T ss_dssp             TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHH---HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhccccceeeeccccchhHHHHHHHHHHHH---hhccCceEEEEeccccccCchhHhhHHHHHHHHHHH
Confidence            77777777776666779999999999988755444433332   234467999999999999888877666655555668


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHH---HHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWM---QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ...|.++|+||+|+........+.   +.+..+...+.....+...+..++...+.+++..++++++||++|+|+++|+.
T Consensus       156 ~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~  235 (244)
T d1yrba1         156 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  235 (244)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             hCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            899999999999999986654443   33444445555556677788888888888899999999999999999999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      +|.++.
T Consensus       236 ~l~e~~  241 (244)
T d1yrba1         236 LAYEHY  241 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.4e-23  Score=186.62  Aligned_cols=171  Identities=22%  Similarity=0.280  Sum_probs=114.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.+|||||||+|+|++.....            ++..+.++    +...              .+...    
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~------------~~~~~~tt----~~~~--------------~~~~~----   49 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTT----RKRL--------------RGILT----   49 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE----
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCcee------------ecccCCcc----cccc--------------cceee----
Confidence            34589999999999999999999986442            34444443    1000              00111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHH-H-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                                     ..+.++.+|||||+.....  .....+.... . ...+|++|+|+|+..+.....     ..+..
T Consensus        50 ---------------~~~~~~~~~DtpG~~~~~~--~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-----~~i~~  107 (178)
T d1wf3a1          50 ---------------EGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-----ELVAR  107 (178)
T ss_dssp             ---------------ETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-----HHHHH
T ss_pred             ---------------eeeeeeeeccccccccccc--ccchhcccccccccccccceeeeechhhhhcccc-----cchhh
Confidence                           2446899999999977521  1122222222 1 245899999999988776543     12223


Q ss_pred             HHh--hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          226 ILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       226 ~l~--~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .++  ..++|+|+|+||+|+.+...  ...+.+.                         ..++...++++||++|.|+++
T Consensus       108 ~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~-------------------------~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1         108 ALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYH-------------------------ELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             HHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHH-------------------------HTSTTSEEEECCTTCHHHHHH
T ss_pred             heeccccchhhhhhhcccccccCHH--HHHHHHH-------------------------hhcccCceEEEecCCCCCHHH
Confidence            333  24689999999999987542  1222221                         223456789999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 014354          304 YFKAVEESAQEFMETYKA  321 (426)
Q Consensus       304 l~~~l~~~~~~~~~~~~~  321 (426)
                      |+++|.+.+|+.+|+||.
T Consensus       161 L~~~i~~~lpe~p~~~p~  178 (178)
T d1wf3a1         161 LKADLLALMPEGPFFYPE  178 (178)
T ss_dssp             HHHHHHTTCCBCCCSSCT
T ss_pred             HHHHHHHhCCCCCCCCCC
Confidence            999999999999999984

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.88  E-value=5.2e-23  Score=190.60  Aligned_cols=203  Identities=20%  Similarity=0.234  Sum_probs=113.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.|+|+|+|++|||||||+|+|++..........+... .....      +. .+..     -...+      ....   
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~-~~~~~------~~-~~~~-----~~~~~------~~~~---   61 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQH-IGATE------IP-MDVI-----EGICG------DFLK---   61 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCB-TTEEE------EE-HHHH-----HHHSC------GGGG---
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeee-ccccc------cc-cccc-----ccccc------cccc---
Confidence            44679999999999999999999987654332211100 00000      00 0000     00000      0000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       ...         ...++.++.|+||||+.++......        ....+|++|+|||+..++..++     ..++..+
T Consensus        62 -~~~---------~~~~~~~~~~iDtPGh~~f~~~~~~--------~~~~~D~~ilVvda~~g~~~~~-----~~~~~~~  118 (227)
T d1g7sa4          62 -KFS---------IRETLPGLFFIDTPGHEAFTTLRKR--------GGALADLAILIVDINEGFKPQT-----QEALNIL  118 (227)
T ss_dssp             -GCG---------GGGTCCEEEEECCCTTSCCTTSBCS--------SSBSCSEEEEEEETTTCCCHHH-----HHHHHHH
T ss_pred             -cee---------ecccccccccccccceecccccchh--------cccccceEEEEEecccCcccch-----hHHHHHh
Confidence             000         0145678999999999876321111        1144899999999999998876     4566777


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccc-cchhhhHHHHhhhhH------------hhhhcCCceEEee
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSD-HSYTSTLTNSLSLAL------------DEFYKNLKSVGVS  294 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l------------~~~~~~~~vv~vS  294 (426)
                      ...++|+|||+||+|++..............+....... ..+...+.+......            ..|....+++++|
T Consensus       119 ~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvS  198 (227)
T d1g7sa4         119 RMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPIS  198 (227)
T ss_dssp             HHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECC
T ss_pred             hcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEee
Confidence            888999999999999986532110000000000000000 000000111111100            1133446899999


Q ss_pred             cccCCCHHHHHHHHHHHHHHH
Q 014354          295 SVSGAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       295 A~~g~gv~~l~~~l~~~~~~~  315 (426)
                      |++|.|+++|++.|....+++
T Consensus       199 a~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         199 AITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999998876654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.87  E-value=9.3e-22  Score=175.20  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=84.2

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl  243 (426)
                      .+..+.++||||+.++.      .....  ....+|++++|+|+..+...++     ..++..+...++|.++|+||+|+
T Consensus        57 ~~~~~~~~d~~g~~~~~------~~~~~--~l~~~d~~ilv~d~~~g~~~~~-----~~~~~~~~~~~~p~iiv~NKiD~  123 (179)
T d1wb1a4          57 ENYRITLVDAPGHADLI------RAVVS--AADIIDLALIVVDAKEGPKTQT-----GEHMLILDHFNIPIIVVITKSDN  123 (179)
T ss_dssp             TTEEEEECCCSSHHHHH------HHHHH--HTTSCCEEEEEEETTTCSCHHH-----HHHHHHHHHTTCCBCEEEECTTS
T ss_pred             CCccccccccccccccc------cchhh--hhhhccccccccccccccchhh-----hhhhhhhhhcCCcceeccccccc
Confidence            44678999999986641      11111  1245799999999999887765     23445566789999999999999


Q ss_pred             CChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      +..+........++.+....                   ....+.++|++||++|+|+++|+++|.+.+++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         124 AGTEEIKRTEMIMKSILQST-------------------HNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHS-------------------SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHh-------------------hcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            98865443333333221110                   11235789999999999999999999998876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=2.6e-21  Score=170.38  Aligned_cols=164  Identities=18%  Similarity=0.164  Sum_probs=102.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|++|||||||+|+|++.....            ++..++++    +                 ..+.....    
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~------------~~~~~~~t----~-----------------~~~~~~~~----   44 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVT----R-----------------DPVQDTVE----   44 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-----------------------------------------------CCSEEEEE----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce------------ecccCcee----e-----------------cccccccc----
Confidence            69999999999999999999876432            33333333    1                 01111111    


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ....++.++||||+...............+.. ...+|++++++|+..+.....     ..+...+..
T Consensus        45 ------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-----~~~~~~l~~  107 (171)
T d1mkya1          45 ------------WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-----ESLADFLRK  107 (171)
T ss_dssp             ------------ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-----HHHHHHHHH
T ss_pred             ------------ccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-----ccccccccc
Confidence                        24467899999998765322222222222222 246899999999988776644     234455667


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|+|+|+||+|+.+.... +....+                          ....+.+++++||++|.|+++|+++|.
T Consensus       108 ~~~pviiv~NK~Dl~~~~~~-~~~~~~--------------------------~~~~~~~~i~iSAk~g~gid~L~~~i~  160 (171)
T d1mkya1         108 STVDTILVANKAENLREFER-EVKPEL--------------------------YSLGFGEPIPVSAEHNINLDTMLETII  160 (171)
T ss_dssp             HTCCEEEEEESCCSHHHHHH-HTHHHH--------------------------GGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhhhh-HHHHHH--------------------------HhcCCCCeEEEecCCCCCHHHHHHHHH
Confidence            88999999999998753321 111100                          012445789999999999999999999


Q ss_pred             HHHHHH
Q 014354          310 ESAQEF  315 (426)
Q Consensus       310 ~~~~~~  315 (426)
                      +.+++.
T Consensus       161 ~~l~e~  166 (171)
T d1mkya1         161 KKLEEK  166 (171)
T ss_dssp             HHHHHT
T ss_pred             HhCCCC
Confidence            988763

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6e-20  Score=178.37  Aligned_cols=237  Identities=16%  Similarity=0.172  Sum_probs=144.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc---
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT---  143 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~---  143 (426)
                      .+..+|+|+|+||||||||+++|+......+.+++|+..||.... ..+..  ..++++    |..+...++..+..   
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~-~ggai--lgdr~r----m~~~~~~~~~~ir~~~~  124 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV-TGGSI--LGDKTR----MNDLARAEAAFIRPVPS  124 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEECC
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceee-ecccc--ccchhH----HHHhccccccccccccc
Confidence            468899999999999999999999999999999999999986532 22221  123332    22333333322111   


Q ss_pred             --ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          144 --SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       144 --~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                        .+.-++......+.++.  ..+++++||+|.|....           +......+|.+++|+.+..+-.-+.....+ 
T Consensus       125 ~g~lgg~~~~~~~~~~~~~--~~g~d~iliEtvG~gq~-----------e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi-  190 (327)
T d2p67a1         125 SGHLGGASQRARELMLLCE--AAGYDVVIVETVGVGQS-----------ETEVARMVDCFISLQIAGGGDDLQGIKKGL-  190 (327)
T ss_dssp             -----CHHHHHHHHHHHHH--HTTCSEEEEEEECCTTH-----------HHHHHTTCSEEEEEECC------CCCCHHH-
T ss_pred             ccccccchhhhhHHHHHHH--hcCCCeEEEeecccccc-----------chhhhhccceEEEEecCCCchhhhhhchhh-
Confidence              11112334445555555  45689999999997442           111224579999999887665544433322 


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                              .+++.++|+||+|+.....+......+......+...                .-....+++.+||++|.|+
T Consensus       191 --------~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~----------------~~~w~p~V~~~SA~~g~Gi  246 (327)
T d2p67a1         191 --------MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRK----------------YDEWQPRVLTCSALEKRGI  246 (327)
T ss_dssp             --------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCS----------------BTTBCCEEEECBGGGTBSH
T ss_pred             --------hccccEEEEEeecccchHHHHHHHHHHHHHhhhcccC----------------CCCCcceeEEEEeeCCCCH
Confidence                    2468899999999998765544444444333222111                0112358999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 014354          302 EAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKD  348 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e  348 (426)
                      ++|+++|.++................+.+.++...+++.++..+.+.
T Consensus       247 ~eL~~~I~~~~~~l~~sG~l~~rR~~Q~~~~~~~~I~e~L~~~~~~~  293 (327)
T d2p67a1         247 DEIWHAIIDFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFAN  293 (327)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999998877654443333333444567778888888888877753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=1.6e-20  Score=166.62  Aligned_cols=169  Identities=19%  Similarity=0.185  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|+||||||||+|+|++...             .++..|++|    ++.                  ..       
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~-------------~~~~~~g~T----~~~------------------~~-------   39 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV-------------RRGKRPGVT----RKI------------------IE-------   39 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC-------------SSSSSTTCT----TSC------------------EE-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-------------eeeCCCCEe----ecc------------------cc-------
Confidence            589999999999999999998753             256666665    211                  11       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccch-----hchHHHHHHHHHh--cCCcEEEEEEeCCCCCCchh------hh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-----SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMT------FM  217 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~-----~~~~~~l~~~~~~--~~~d~vl~VVDa~~~~~~~~------~~  217 (426)
                                  ....++.||||||+......     ......+...+..  ..+|++++|||+........      ..
T Consensus        40 ------------~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~  107 (184)
T d2cxxa1          40 ------------IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI  107 (184)
T ss_dssp             ------------EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCC
T ss_pred             ------------cccccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhcccc
Confidence                        12246889999997433111     1112222222222  34899999999864321110      00


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      ......+..+...++|+|+|+||+|++.....  +...+..   .+              ...+..  ....++++||++
T Consensus       108 ~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~---~~--------------~~~~~~--~~~~~~~vSA~~  166 (184)
T d2cxxa1         108 PIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLAE---KF--------------EVPLSE--IDKVFIPISAKF  166 (184)
T ss_dssp             CHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHHH---HH--------------TCCGGG--HHHHEEECCTTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeeeehhhhHHH--HHHHHHH---Hh--------------cccccc--cCCeEEEEECCC
Confidence            01133455567789999999999998865421  1111110   00              000001  113588999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 014354          298 GAGIEAYFKAVEESAQE  314 (426)
Q Consensus       298 g~gv~~l~~~l~~~~~~  314 (426)
                      |.|+++|+++|.+.+++
T Consensus       167 g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         167 GDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHccC
Confidence            99999999999998886

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=1.3e-20  Score=167.17  Aligned_cols=165  Identities=20%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|+||||||||+|+|++.....             ...+.++.   +..               -+....      
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~-------------~~~~~~t~---~~~---------------~~~~~~------   45 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKI-------------APYPFTTL---SPN---------------LGVVEV------   45 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEE-------------CCCTTCSS---CCE---------------EEEEEC------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCce-------------eccCCCce---eee---------------eceeee------
Confidence            38999999999999999999875331             11111110   000               011111      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchh-chHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH--H
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI--L  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~-~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~--l  227 (426)
                                  ..+.++++|||||+....... .........  ...++++++++|........  .......+..  .
T Consensus        46 ------------~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~  109 (180)
T d1udxa2          46 ------------SEEERFTLADIPGIIEGASEGKGLGLEFLRH--IARTRVLLYVLDAADEPLKT--LETLRKEVGAYDP  109 (180)
T ss_dssp             ------------SSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--HTSSSEEEEEEETTSCHHHH--HHHHHHHHHHHCH
T ss_pred             ------------cCCCeEEEcCCCeeecCchHHHHHHHHHHHH--HHhhhhhhhhcccccccccc--hhhhhhhhhcccc
Confidence                        244679999999987643211 111222222  24578999999986543211  1111111111  2


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+........+.+.+.                           ..+.++|++||++|+|+++|++.
T Consensus       110 ~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~---------------------------~~~~~~~~iSA~tg~gid~L~~~  162 (180)
T d1udxa2         110 ALLRRPSLVALNKVDLLEEEAVKALADALA---------------------------REGLAVLPVSALTGAGLPALKEA  162 (180)
T ss_dssp             HHHHSCEEEEEECCTTSCHHHHHHHHHHHH---------------------------TTTSCEEECCTTTCTTHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhHHHHHHHHHHHH---------------------------hcCCeEEEEEcCCCCCHHHHHHH
Confidence            345789999999999998765433322221                           13567999999999999999999


Q ss_pred             HHHHHHHH
Q 014354          308 VEESAQEF  315 (426)
Q Consensus       308 l~~~~~~~  315 (426)
                      |.+.++..
T Consensus       163 i~~~l~~~  170 (180)
T d1udxa2         163 LHALVRST  170 (180)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHhhc
Confidence            98887653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=9.1e-20  Score=163.80  Aligned_cols=170  Identities=14%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc
Q 014354           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (426)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~  144 (426)
                      +....++|+|+|+||||||||+|+|++.....           .++..+.++    +                 ..... 
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~-----------~~~~~~~~t----~-----------------~~~~~-   65 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLA-----------RTSSKPGKT----Q-----------------TLNFY-   65 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC----------------------------C-----------------CEEEE-
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceE-----------Eeeccccee----e-----------------ecccc-
Confidence            34456789999999999999999999864211           022222222    0                 00011 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhc----hHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhh
Q 014354          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA----SGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSN  219 (426)
Q Consensus       145 ~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~----~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~  219 (426)
                                        .....+.++|++|.........    ....+...... ..++++++|+|+..++....    
T Consensus        66 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~----  123 (195)
T d1svia_          66 ------------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD----  123 (195)
T ss_dssp             ------------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH----
T ss_pred             ------------------cccccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccc----
Confidence                              1235677888888655421111    11112222222 34689999999988776644    


Q ss_pred             HHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       220 ~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                       ..++..+...++|+++|+||+|+.......+..+.+....                      ....+.+++++||++|+
T Consensus       124 -~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l----------------------~~~~~~~~~~~SA~~~~  180 (195)
T d1svia_         124 -VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL----------------------NIDPEDELILFSSETKK  180 (195)
T ss_dssp             -HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----------------------TCCTTSEEEECCTTTCT
T ss_pred             -cccccccccccCcceechhhccccCHHHHHHHHHHHHHHh----------------------cccCCCCEEEEeCCCCC
Confidence             3455667788999999999999988765444433332111                      12345689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 014354          300 GIEAYFKAVEESA  312 (426)
Q Consensus       300 gv~~l~~~l~~~~  312 (426)
                      |+++|+++|.+.+
T Consensus       181 gi~el~~~i~~~l  193 (195)
T d1svia_         181 GKDEAWGAIKKMI  193 (195)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=6.1e-20  Score=166.95  Aligned_cols=115  Identities=20%  Similarity=0.280  Sum_probs=79.2

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-CchhhhhhHHHHHHHHhhccC-CeEEEEecCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKiD  242 (426)
                      ..+.|+||||+.++         +..+.++ ..+|++|+|||+..++ ..++     ...+..+...++ |+|+++||+|
T Consensus        86 r~~~iiD~PGH~df---------~~~~~~~~~~ad~ailvVda~~gi~~~~t-----~e~~~~~~~~~i~~iIV~vNK~D  151 (205)
T d2qn6a3          86 RRISFIDAPGHEVL---------MATMLSGAALMDGAILVVAANEPFPQPQT-----REHFVALGIIGVKNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEEECSCHHHH---------HHHHHHTSSCCSEEEEEEETTSCSSCHHH-----HHHHHHHHHTTCCCEEEEEECGG
T ss_pred             EEEEEeccchHHHH---------HhhhhcceeccccccccccccccccchhH-----HHHHHHHHHcCCceeeeccccCC
Confidence            36889999999775         2222322 5689999999999986 4343     223344555565 7788899999


Q ss_pred             CCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      ++...........+..+...                    .++..++++++||++|.|+++|++.|.+++|+
T Consensus       152 l~~~~~~~~~~~~~~~~l~~--------------------~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         152 VVSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             GSCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CccchHHHHHHHHHHHHhcc--------------------ccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            99876544333333221111                    23345789999999999999999999887663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.5e-19  Score=160.70  Aligned_cols=170  Identities=20%  Similarity=0.241  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|++|||||||+|+|++.....            ++..+.++    +..              ..+.+.    
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~------------~~~~~~t~----~~~--------------~~~~~~----   52 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDP--------------VDDEVF----   52 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC------------------------CCEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcce------------eecccccc----ccc--------------ceeeec----
Confidence            46899999999999999999999876432            33334333    100              011111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccc------hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT------WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~------~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                     ..+..+.++||||+.....      +......+...+  ..+|++++|+|+..+.....     .
T Consensus        53 ---------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvii~v~d~~~~~~~~~-----~  110 (186)
T d1mkya2          53 ---------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQD-----Q  110 (186)
T ss_dssp             ---------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHH-----H
T ss_pred             ---------------cCCceeeeeccCCccccccccccccccchhHHHHHHH--hcCCEEEEeecccccchhhH-----H
Confidence                           2456889999999865421      111112222222  33799999999998877655     2


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhH--HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~  299 (426)
                      .++..+...++|+|+|+||+|+......  .++.+.+.   ..                   ..+..+.+++++||++|.
T Consensus       111 ~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~i~~vSa~~g~  168 (186)
T d1mkya2         111 RMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR---EK-------------------LYFIDYSPLIFTSADKGW  168 (186)
T ss_dssp             HHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHH---HH-------------------CGGGTTSCEEECBTTTTB
T ss_pred             HHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHH---HH-------------------hcccCCCeEEEEeCCCCC
Confidence            3445566788999999999998765431  11211111   10                   023456789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 014354          300 GIEAYFKAVEESAQEF  315 (426)
Q Consensus       300 gv~~l~~~l~~~~~~~  315 (426)
                      |+++|++.|.+.+..+
T Consensus       169 gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         169 NIDRMIDAMNLAYASY  184 (186)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999998877654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.81  E-value=1.5e-19  Score=162.92  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=76.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCCCC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVA  244 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiDl~  244 (426)
                      ..+.|+||||+.++.      ..+.+.  ...+|++++|||+..+......    ...+..+...++| +|+|+||+|+.
T Consensus        78 ~~~~~iDtPGh~~f~------~~~~~~--~~~~d~~ilvvda~~g~~~~~t----~e~~~~~~~~~~~~iiv~inK~D~~  145 (195)
T d1kk1a3          78 RRVSFIDAPGHEALM------TTMLAG--ASLMDGAILVIAANEPCPRPQT----REHLMALQIIGQKNIIIAQNKIELV  145 (195)
T ss_dssp             EEEEEEECSSHHHHH------HHHHHC--GGGCSEEEEEEETTSCSSCHHH----HHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred             eeEeeeccchhhhhh------HHhhcc--cccccccccccchhhhhhhhhh----HHHHHHHHHhcCccceeeeecccch
Confidence            468999999987641      122221  1457999999999988644321    2233345555666 67789999999


Q ss_pred             ChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHH
Q 014354          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (426)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~  313 (426)
                      +..........+..+...                    .....+++||+||++|.|+++|+++|.+.+|
T Consensus       146 d~~~~~~~~~~~~~~~~~--------------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         146 DKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            876543333333322111                    1224578999999999999999999988654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.81  E-value=5.1e-19  Score=171.50  Aligned_cols=238  Identities=17%  Similarity=0.192  Sum_probs=147.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccc--
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS--  144 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~--  144 (426)
                      .+..+|+|.|+||||||||+++|+......+.+++|+..||... +..+...  .++++    |..+...++.++...  
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~-~~gg~ll--gdr~r----m~~~~~~~~~~ir~~~~  121 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST-RTGGSIL--GDKTR----MARLAIDRNAFIRPSPS  121 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG-SSCCCSS--CCGGG----STTGGGCTTEEEECCCC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccH-HHHhccc--cchhh----HHHHhcccceeeccccc
Confidence            46789999999999999999999998888899999999998653 3223222  23332    223333332221110  


Q ss_pred             ---cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          145 ---LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       145 ---~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                         +.-++......+.++.  ..+++++||+|.|...-      ..     .....+|+.++|+....|-.-+.....+ 
T Consensus       122 ~~~~gg~~~~~~~~i~~~~--~~g~d~iiiETVG~gq~------e~-----~~~~~~D~~v~v~~p~~GD~iQ~~k~gi-  187 (323)
T d2qm8a1         122 SGTLGGVAAKTRETMLLCE--AAGFDVILVETVGVGQS------ET-----AVADLTDFFLVLMLPGAGDELQGIKKGI-  187 (323)
T ss_dssp             CSSHHHHHHHHHHHHHHHH--HTTCCEEEEEECSSSSC------HH-----HHHTTSSEEEEEECSCC------CCTTH-
T ss_pred             cccccchhHHHHHHHHhhc--cCCCCeEEEeehhhhhh------hh-----hhhcccceEEEEeeccchhhhhhhhhhH-
Confidence               0112233444444444  45799999999997442      11     1224579999999998776555433332 


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g  300 (426)
                              .+++.|+|+||+|+....... .....+......+...                .-....+++.+||++|.|
T Consensus       188 --------lE~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~p~V~~~Sa~~g~G  243 (323)
T d2qm8a1         188 --------FELADMIAVNKADDGDGERRASAAASEYRAALHILTPP----------------SATWTPPVVTISGLHGKG  243 (323)
T ss_dssp             --------HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCS----------------BTTBCCCEEEEBTTTTBS
T ss_pred             --------hhhhheeeEeccccccchHHHHHHHHHHHHHhhccccc----------------ccCCCCceEEEEecCCCC
Confidence                    366889999999988765432 2222222111110000                011346899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014354          301 IEAYFKAVEESAQEFMETYKADLDKRRAEKQRLEEERQKENINKLRKDM  349 (426)
Q Consensus       301 v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~re~~~~~l~~e~  349 (426)
                      +++|+++|.++................+.++++.+.+++.+++.+.+..
T Consensus       244 i~el~~~I~~~~~~~~~~G~l~~rR~~q~~~w~~~~V~e~L~~~~~~~~  292 (323)
T d2qm8a1         244 LDSLWSRIEDHRSKLTATGEIAGKRREQDVKWMWALVHERLHQRLVGSA  292 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH
T ss_pred             HHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            9999999988776654443333334456688888888888888877543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=5.9e-20  Score=163.53  Aligned_cols=167  Identities=20%  Similarity=0.291  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|+||||||||+|+|++....             +...+++|.-                  ++-+....      
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~-------------~~~~~~~T~~------------------~~~~~~~~------   45 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK-------------IADYHFTTLV------------------PNLGMVET------   45 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE-------------ESSTTSSCCC------------------CCEEEEEC------
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc-------------eecCCCceEe------------------eeeceeEe------
Confidence            5899999999999999999987633             2233333300                  00111110      


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccc-hhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH--HHHH
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA--CSIL  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~-~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~--~~~l  227 (426)
                                  ..+..+++|||||+.+... ...........+  ..++.++++++.......... ......  ....
T Consensus        46 ------------~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~--~~~~~i~~~v~~~~~~~~~~~-~~~~~~~~~~~~  110 (185)
T d1lnza2          46 ------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--ERTRVIVHVIDMSGLEGRDPY-DDYLTINQELSE  110 (185)
T ss_dssp             ------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--HHCCEEEEEEESSCSSCCCHH-HHHHHHHHHHHH
T ss_pred             ------------cCCcEEEEecCCCcccCchHHHHHHHHHHHHH--HHhhhhhheeeecccccchhh-hhhhhhhhccch
Confidence                        1335789999999865321 112223333332  235788888876544332211 111111  1111


Q ss_pred             h---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 ~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      .   ..++|+|+|+||+|+.......   +.+.   .                     .+....+++++||++|.|+++|
T Consensus       111 ~~~~~~~kp~ivv~NK~Dl~~~~~~~---~~~~---~---------------------~~~~~~~v~~iSA~~g~Gi~~L  163 (185)
T d1lnza2         111 YNLRLTERPQIIVANKMDMPEAAENL---EAFK---E---------------------KLTDDYPVFPISAVTREGLREL  163 (185)
T ss_dssp             SCSSTTTSCBCBEEECTTSTTHHHHH---HHHH---H---------------------HCCSCCCBCCCSSCCSSTTHHH
T ss_pred             hhhhccCCcchhhccccchHhHHHHH---HHHH---H---------------------HhccCCcEEEEECCCCCCHHHH
Confidence            1   2468999999999998764321   1111   1                     1234568999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          305 FKAVEESAQEFM  316 (426)
Q Consensus       305 ~~~l~~~~~~~~  316 (426)
                      +++|.+.+++.+
T Consensus       164 ~~~i~~~L~~~p  175 (185)
T d1lnza2         164 LFEVANQLENTP  175 (185)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHhhhhCC
Confidence            999998886543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5e-20  Score=159.92  Aligned_cols=159  Identities=16%  Similarity=0.227  Sum_probs=100.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+|+|+|.+|||||||+|+|++.....            +...|+++    +..+              .+.+.     
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~-----   45 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT----RDVL--------------REHIH-----   45 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC----CSCE--------------EEEEE-----
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceE------------eecccccc----cceE--------------eeeee-----
Confidence            4689999999999999999999876442            33444443    1111              11111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ..+..+.++||||+.+..... ....+..... ...+|++++++|+............ ..... .
T Consensus        46 --------------~~~~~~~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~-~  108 (161)
T d2gj8a1          46 --------------IDGMPLHIIDTAGLREASDEV-ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIA-R  108 (161)
T ss_dssp             --------------ETTEEEEEEECCCCSCCSSHH-HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHC-HHHHH-H
T ss_pred             --------------ccCceeeeccccccccccccc-hhHHHHHHHHHHHhccccceeeccccccchhhhhhh-hhhhh-h
Confidence                          245688999999997752111 1111222221 2458999999999876543221100 11111 1


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|+|+||+|+.......                                ......+++++||++|.|+++|+++
T Consensus       109 ~~~~~~iilv~NK~Dl~~~~~~~--------------------------------~~~~~~~~~~iSAk~~~gi~~L~~~  156 (161)
T d2gj8a1         109 LPAKLPITVVRNKADITGETLGM--------------------------------SEVNGHALIRLSARTGEGVDVLRNH  156 (161)
T ss_dssp             SCTTCCEEEEEECHHHHCCCCEE--------------------------------EEETTEEEEECCTTTCTTHHHHHHH
T ss_pred             cccccceeeccchhhhhhhHHHH--------------------------------HHhCCCcEEEEECCCCCCHHHHHHH
Confidence            23479999999999976542100                                0123467999999999999999999


Q ss_pred             HHHH
Q 014354          308 VEES  311 (426)
Q Consensus       308 l~~~  311 (426)
                      |.+.
T Consensus       157 l~~~  160 (161)
T d2gj8a1         157 LKQS  160 (161)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=1.7e-19  Score=156.31  Aligned_cols=156  Identities=19%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|.||||||||+|+|++.....            ++..++++    +..+              ...+.       
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~------------~~~~~~~~----~~~~--------------~~~~~-------   44 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTT----RDVI--------------SEEIV-------   44 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCS----SCSC--------------CEEEE-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee------------eecccccc----ccce--------------eEEEE-------
Confidence            69999999999999999999886442            34444443    1000              01111       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ..+..+.++||||+............+..++. ...+|++++|+|+..+......     .+..  ..
T Consensus        45 ------------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~-----~~~~--~~  105 (160)
T d1xzpa2          45 ------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-----KILE--RI  105 (160)
T ss_dssp             ------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-----HHHH--HH
T ss_pred             ------------eCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhh-----hhhh--hc
Confidence                        24568899999998654221111011111121 1346999999999887654331     1111  22


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|+++++||+|+........+..                            .+....++|++||++|.|+++|+++|.
T Consensus       106 ~~~~~i~~~~k~d~~~~~~~~~~~~----------------------------~~~~~~~~~~vSA~~g~gi~~L~~~I~  157 (160)
T d1xzpa2         106 KNKRYLVVINKVDVVEKINEEEIKN----------------------------KLGTDRHMVKISALKGEGLEKLEESIY  157 (160)
T ss_dssp             TTSSEEEEEEECSSCCCCCHHHHHH----------------------------HHTCSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred             ccccceeeeeeccccchhhhHHHHH----------------------------HhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999998654332221                            123456799999999999999999986


Q ss_pred             H
Q 014354          310 E  310 (426)
Q Consensus       310 ~  310 (426)
                      +
T Consensus       158 k  158 (160)
T d1xzpa2         158 R  158 (160)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.76  E-value=1.1e-18  Score=157.47  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=77.9

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccC-CeEEEEecC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKT  241 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~-P~IlVlNKi  241 (426)
                      .+..+.++||||+.++         +..+.+. ..+|++|+|||+..|+.+++     ..++.++...++ |+|+++||+
T Consensus        64 ~~~~~~~iDtPGh~~f---------~~~~~~~~~~aD~allVVda~~G~~~QT-----~~~~~~a~~~~~~~iIv~iNK~  129 (196)
T d1d2ea3          64 AARHYAHTDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQT-----REHLLLARQIGVEHVVVYVNKA  129 (196)
T ss_dssp             SSCEEEEEECSSHHHH---------HHHHHHTSSCCSEEEEEEETTTCSCHHH-----HHHHHHHHHTTCCCEEEEEECG
T ss_pred             ceeeEEeecCcchHHH---------HHHHHHHHhhcCeEEEEEEcCCCCchhH-----HHHHHHHHHhcCCcEEEEEecc
Confidence            5678999999999775         2223332 45899999999999998877     344555555555 678889999


Q ss_pred             CCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccC----------CCHHHHHHHHHH
Q 014354          242 DVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG----------AGIEAYFKAVEE  310 (426)
Q Consensus       242 Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g----------~gv~~l~~~l~~  310 (426)
                      |++..... ..+...++.+...              ++    -....++++++||++|          .|+..|+++|.+
T Consensus       130 D~~~~~~~~~~i~~~i~~~l~~--------------~~----~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         130 DAVQDSEMVELVELEIRELLTE--------------FG----YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHH--------------TT----SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHH--------------hC----CCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            99875432 2222233322211              00    0113478999999998          477888777766


Q ss_pred             HHH
Q 014354          311 SAQ  313 (426)
Q Consensus       311 ~~~  313 (426)
                      ..|
T Consensus       192 ~iP  194 (196)
T d1d2ea3         192 YIP  194 (196)
T ss_dssp             HSC
T ss_pred             hCC
Confidence            543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.7e-19  Score=157.81  Aligned_cols=170  Identities=22%  Similarity=0.245  Sum_probs=108.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+.+|+|+|.+|||||||+|+|++.....            ++..+.++..    .+              .+...    
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~------------~~~~~~t~~~----~~--------------~~~~~----   49 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTTRH----RI--------------VGIHT----   49 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCCSS----CE--------------EEEEE----
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCcee------------eccCCCceEE----EE--------------Eeeee----
Confidence            34679999999999999999999876432            2223323211    00              01111    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH------hcCCcEEEEEEeCCCCCCchhhhhhHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA------STFPTVVTYVVDTPRSANPMTFMSNML  221 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~------~~~~d~vl~VVDa~~~~~~~~~~~~~l  221 (426)
                                     .....++++|+||......     ........      ...++++++++|+........      
T Consensus        50 ---------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~------  103 (179)
T d1egaa1          50 ---------------EGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDE------  103 (179)
T ss_dssp             ---------------ETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHH------
T ss_pred             ---------------cCCceeEeecCCCceecch-----hhhhhhhhhccccchhhcceeEEEEecCccchhHH------
Confidence                           2345778899999865311     11111111      123678888898865432221      


Q ss_pred             HHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCH
Q 014354          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (426)
Q Consensus       222 ~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv  301 (426)
                      .....+.+...|.++|+||+|.......  +......                      +...+.+.++++|||++|.|+
T Consensus       104 ~~~~~l~~~~~~~i~v~~k~d~~~~~~~--~~~~~~~----------------------~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1         104 MVLNKLREGKAPVILAVNKVDNVQEKAD--LLPHLQF----------------------LASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             HHHHHHHSSSSCEEEEEESTTTCCCHHH--HHHHHHH----------------------HHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHHHhhhccCceeeeeeeeeccchhhh--hhhHhhh----------------------hhhhcCCCCEEEEeCcCCCCH
Confidence            2233455678899999999998876421  1111111                      112346678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 014354          302 EAYFKAVEESAQEFMETYKA  321 (426)
Q Consensus       302 ~~l~~~l~~~~~~~~~~~~~  321 (426)
                      ++|+++|.+.+|+.++.||.
T Consensus       160 ~~L~~~i~~~lpe~~~~yp~  179 (179)
T d1egaa1         160 DTIAAIVRKHLPEATHHFPE  179 (179)
T ss_dssp             HHHHHHHHTTCCBCCCSSCT
T ss_pred             HHHHHHHHHhCCCCCCCCCC
Confidence            99999999999998888873

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.75  E-value=1.8e-18  Score=152.22  Aligned_cols=163  Identities=19%  Similarity=0.250  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..+..+|+++|.+|||||||+|+|.+..+..            +.  + +..+..                      .+.
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~------------~~--~-~~~~~~----------------------~~i   55 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISH------------IT--P-TQGFNI----------------------KSV   55 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEE------------EE--E-ETTEEE----------------------EEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCc------------ce--e-eeeeeE----------------------EEe
Confidence            3456899999999999999999998876432            00  0 000000                      000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .                .++..+.++|+||+..+.      ......+  ..++++++|+|+..................
T Consensus        56 ~----------------~~~~~~~i~d~~g~~~~~------~~~~~~~--~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~  111 (176)
T d1fzqa_          56 Q----------------SQGFKLNVWDIGGQRKIR------PYWRSYF--ENTDILIYVIDSADRKRFEETGQELTELLE  111 (176)
T ss_dssp             E----------------ETTEEEEEEECSSCGGGH------HHHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTT
T ss_pred             c----------------cCCeeEeEeeccccccch------hHHHHHh--hccceeEEeeccccccchhhhhhhhhhhhh
Confidence            0                234688999999987751      1111122  457999999998754332211110011111


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....++|++||+||+|+........+.+.+.                     ... ......+++++||++|.|+++++
T Consensus       112 ~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~SA~tg~gv~e~~  169 (176)
T d1fzqa_         112 EEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---------------------LHT-IRDRVWQIQSCSALTGEGVQDGM  169 (176)
T ss_dssp             CGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------GGG-CCSSCEEEEECCTTTCTTHHHHH
T ss_pred             hhccCCCeEEEEEEeccccccccHHHHHHHHH---------------------HHH-HHhcCCEEEEEeCCCCCCHHHHH
Confidence            12234789999999999987643322222111                     000 01123568999999999999999


Q ss_pred             HHHHHH
Q 014354          306 KAVEES  311 (426)
Q Consensus       306 ~~l~~~  311 (426)
                      ++|.+.
T Consensus       170 ~~l~~~  175 (176)
T d1fzqa_         170 NWVCKN  175 (176)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999763

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.74  E-value=1.5e-18  Score=151.25  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+++|.+......        .|       +  ++.                    ......  
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~--------~~-------t--~~~--------------------~~~~~~--   42 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTI--------SP-------T--LGF--------------------NIKTLE--   42 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSC--------CC-------C--SSE--------------------EEEEEE--
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcc--------cc-------e--Eee--------------------eeeecc--
Confidence            46799999999999999999988653320        01       1  000                    000000  


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-  227 (426)
                                    .++..+.+|||||+..+......        ....++.+++|+|+........   ....+...+ 
T Consensus        43 --------------~~~~~~~~~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~d~~~~~~---~~~~~~~~~~   97 (165)
T d1ksha_          43 --------------HRGFKLNIWDVGGQKSLRSYWRN--------YFESTDGLIWVVDSADRQRMQD---CQRELQSLLV   97 (165)
T ss_dssp             --------------ETTEEEEEEEECCSHHHHTTGGG--------GCTTCSEEEEEEETTCGGGHHH---HHHHHHHHHT
T ss_pred             --------------ccccceeeeecCcchhhhhHHHh--------hhhhhhcceeeeecccchhHHH---HHHhhhhhhh
Confidence                          24578999999998654111000        1134789999999866433222   111222222 


Q ss_pred             --hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeecccCCCHHHH
Q 014354          228 --YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       228 --~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~g~gv~~l  304 (426)
                        ...+.|++||+||+|+............+.                       +.. .....+++++||++|.||.++
T Consensus        98 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          98 EERLAGATLLIFANKQDLPGALSCNAIQEALE-----------------------LDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT-----------------------GGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             hcccCCCceEEEEeccccccccCHHHHHHHHH-----------------------hhhhhcCCCEEEEEECCCCCCHHHH
Confidence              245789999999999976443222211110                       000 012357899999999999999


Q ss_pred             HHHHHHHHH
Q 014354          305 FKAVEESAQ  313 (426)
Q Consensus       305 ~~~l~~~~~  313 (426)
                      +++|.+.+.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.2e-17  Score=151.66  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +...|+++|++++|||||+++|+.......+.+         + .......+   ...   --++.|+....+..+.   
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~---------~-~~~~~~~d---~~~---eE~~rgiTi~~~~~~~---   62 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV---------E-VKDYGDID---KAP---EERARGITINTAHVEY---   62 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS---------C-CCCHHHHS---CSH---HHHHHTCCCSCEEEEE---
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCc---------c-hhhhhhcc---cch---HHhcCCeEEEeeEEEE---
Confidence            346899999999999999999986543221110         0 00000011   000   0112233333222210   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ...+..+.||||||+.++.      ..+...+  ..+|++|+|||+..|+..++     ..++..+
T Consensus        63 --------------~~~~~~i~iiDtPGh~df~------~~~~~~~--~~aD~avlVvda~~Gv~~qt-----~~~~~~~  115 (204)
T d2c78a3          63 --------------ETAKRHYSHVDCPGHADYI------KNMITGA--AQMDGAILVVSAADGPMPQT-----REHILLA  115 (204)
T ss_dssp             --------------ECSSCEEEEEECCCSGGGH------HHHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHH
T ss_pred             --------------EeCCeEEEEEeCCCchhhH------HHHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHH
Confidence                          1466899999999998862      2222222  45899999999999999877     4466667


Q ss_pred             hhccCC-eEEEEecCCCCChH
Q 014354          228 YKTRLP-LVLAFNKTDVAQHE  247 (426)
Q Consensus       228 ~~~~~P-~IlVlNKiDl~~~~  247 (426)
                      ...++| +|+++||+|++...
T Consensus       116 ~~~gi~~iiv~iNK~D~~~~~  136 (204)
T d2c78a3         116 RQVGVPYIVVFMNKVDMVDDP  136 (204)
T ss_dssp             HHTTCCCEEEEEECGGGCCCH
T ss_pred             HHcCCCeEEEEEEecccCCCH
Confidence            788887 56679999998744

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.73  E-value=2.8e-18  Score=152.16  Aligned_cols=163  Identities=23%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .++..+|+++|.+|||||||+++|.+.....            .  .| +.                      +......
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~------------~--~~-t~----------------------~~~~~~~   56 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT------------T--KP-TI----------------------GFNVETL   56 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE------------E--CS-ST----------------------TCCEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc------------c--cc-cc----------------------ceEEEEE
Confidence            4467899999999999999999997765321            0  01 10                      0000000


Q ss_pred             ccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       146 ~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      .                .++..+.+|||||+..+.......        ...++++++|+|+..........   ..+..
T Consensus        57 ~----------------~~~~~~~i~D~~g~~~~~~~~~~~--------~~~~~~ii~v~d~~d~~s~~~~~---~~l~~  109 (182)
T d1moza_          57 S----------------YKNLKLNVWDLGGQTSIRPYWRCY--------YADTAAVIFVVDSTDKDRMSTAS---KELHL  109 (182)
T ss_dssp             E----------------ETTEEEEEEEEC----CCTTGGGT--------TTTEEEEEEEEETTCTTTHHHHH---HHHHH
T ss_pred             e----------------eCCEEEEEEecccccccchhHHhh--------hccceeEEEEeeecccccchhHH---HHHHH
Confidence            0                245688999999997752111110        13468999999987655433221   11112


Q ss_pred             HHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       226 ~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                      .+.   ..+.|++||+||+|+.......++.+.+                     +... ......+++++||++|+||.
T Consensus       110 ~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_         110 MLQEEELQDAALLVFANKQDQPGALSASEVSKEL---------------------NLVE-LKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             HTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT---------------------TTTT-CCSSCEEEEEEBGGGTBTHH
T ss_pred             HHHhhccCCcceEEEEEeeccccccCHHHHHHHH---------------------HHHH-HhhCCCEEEEEECCCCCCHH
Confidence            222   3468999999999997643222222211                     1000 00123568999999999999


Q ss_pred             HHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQE  314 (426)
Q Consensus       303 ~l~~~l~~~~~~  314 (426)
                      +++++|.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.7e-18  Score=147.78  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |...    ........                 .+..      
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~-------~t~~----~~~~~~~~-----------------~~~~------   48 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYK-------ATIG----ADFLTKEV-----------------TVDG------   48 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC----------CC----CSCEEEEE-----------------CCSS------
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccC-------cccc----cceeeeee-----------------eecC------
Confidence            579999999999999999999876543211       0000    00000000                 0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                   .....+.+|||||+.+...       +.. .....++++++|+|.....+-..    ...+...+. 
T Consensus        49 -------------~~~~~~~~~d~~g~~~~~~-------~~~-~~~~~~~~~ilv~d~~~~~s~~~----~~~~~~~i~~  103 (175)
T d1ky3a_          49 -------------DKVATMQVWDTAGQERFQS-------LGV-AFYRGADCCVLVYDVTNASSFEN----IKSWRDEFLV  103 (175)
T ss_dssp             -------------SCCEEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHT----HHHHHHHHHH
T ss_pred             -------------cccccceeeccCCchhhhh-------HHH-HHhhccceEEEEeecccccccch----hhhcchhhhh
Confidence                         1224578999999866421       111 01134799999999865432111    111111111 


Q ss_pred             ------hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHH
Q 014354          229 ------KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       229 ------~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~  302 (426)
                            ..++|+|||+||+|+........ ....+.+.                      ..+...+++++||++|.||+
T Consensus       104 ~~~~~~~~~~piilv~nK~Dl~~~~~~v~-~~~~~~~~----------------------~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_         104 HANVNSPETFPFVILGNKIDAEESKKIVS-EKSAQELA----------------------KSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             HHCCSCTTTCCEEEEEECTTSCGGGCCSC-HHHHHHHH----------------------HHTTSCCEEEEBTTTTBSHH
T ss_pred             hhhhcccccCcEEEEecccchhhhhcchh-HHHHHHHH----------------------HHcCCCeEEEEeCCCCcCHH
Confidence                  24789999999999876532100 01111111                      12345779999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014354          303 AYFKAVEESAQEF  315 (426)
Q Consensus       303 ~l~~~l~~~~~~~  315 (426)
                      ++|.+|.+.+.+.
T Consensus       161 e~f~~l~~~~l~~  173 (175)
T d1ky3a_         161 TAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998776543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.2e-18  Score=150.69  Aligned_cols=174  Identities=17%  Similarity=0.168  Sum_probs=101.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ....+|+|+|.+|||||||+++++...+.....       |.+.... ...                       +..   
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~-------~Ti~~~~-~~~-----------------------~~~---   52 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV-------PTVFDHY-AVS-----------------------VTV---   52 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC-------CSSCCCE-EEE-----------------------EES---
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCC-------Cceeeee-eEE-----------------------Eee---
Confidence            345789999999999999999999876543211       1111000 000                       000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ....+.+.+|||+|+..+......        .-..+|++++|+|..+..   .|..........
T Consensus        53 ---------------~~~~~~l~i~D~~g~e~~~~~~~~--------~~~~a~~~ilv~d~t~~~---Sf~~~~~~~~~~  106 (185)
T d2atxa1          53 ---------------GGKQYLLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPA---SFQNVKEEWVPE  106 (185)
T ss_dssp             ---------------SSCEEEEEEECCCCSSSSTTTGGG--------GCTTCSEEEEEEETTCHH---HHHHHHHTHHHH
T ss_pred             ---------------CCceEEeecccccccchhhhhhhh--------cccccceeeeccccchHH---HHHHHHHHHHHH
Confidence                           012357889999999775211111        113479999999986532   222111112222


Q ss_pred             H--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 L--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +  ...+.|.|+|.||+|+..............            .+.+....+.-+...++..+++++||++|.||+++
T Consensus       107 ~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~------------~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~  174 (185)
T d2atxa1         107 LKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK------------EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV  174 (185)
T ss_dssp             HHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTT------------CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred             HHhcCCCCCeeEeeeccccccchhhhhhhhhcc------------cccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHH
Confidence            2  245789999999999988653321111000            00111111222222344578999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      |+.+.+.+
T Consensus       175 F~~li~~i  182 (185)
T d2atxa1         175 FDEAIIAI  182 (185)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.2e-18  Score=148.92  Aligned_cols=172  Identities=14%  Similarity=0.127  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |.+.... ..                       .+..      
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~-------~t~~~~~-~~-----------------------~~~~------   45 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYV-------PTVFENY-VA-----------------------DIEV------   45 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSEEEE-EE-----------------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcC-------Cceeeec-cc-----------------------cccc------
Confidence            468999999999999999999876543211       1110000 00                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.||||||+..+.......        -..++++++|+|.+...   .|......+...+. 
T Consensus        46 ------------~~~~~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~---Sf~~~~~~~~~~~~~  102 (177)
T d1kmqa_          46 ------------DGKQVELALWDTAGLEDYDRLRPLS--------YPDTDVILMCFSIDSPD---SLENIPEKWTPEVKH  102 (177)
T ss_dssp             ------------TTEEEEEEEEEECCSGGGTTTGGGG--------CTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHH
T ss_pred             ------------cccceeeeccccCccchhcccchhh--------cccchhhhhhcccchhH---HHHHHHHHHHHHHHH
Confidence                        0233578999999997763211110        13479999999986532   22211111222222 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|++||.||+|+..............            ...+....+..+...+...+++++||++|.||.++|+.
T Consensus       103 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~------------~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~  170 (177)
T d1kmqa_         103 FCPNVPIILVGNKKDLRNDEHTRRELAKMK------------QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEM  170 (177)
T ss_dssp             HSTTSCEEEEEECGGGTTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred             hCCCCceEEeeecccccchhhHHHHHHHhh------------cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHH
Confidence             34689999999999987653221111000            00111111222222334567999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       171 i~~~~l  176 (177)
T d1kmqa_         171 ATRAAL  176 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5e-18  Score=149.58  Aligned_cols=166  Identities=13%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+|+|.+|||||||++++++..+.....       |..... +...+                       ..   
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~-------~t~~~~-~~~~~-----------------------~~---   49 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-------PTIEDS-YTKIC-----------------------SV---   49 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC-------TTCCEE-EEEEE-----------------------EE---
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccc-------cccccc-eeeEe-----------------------cc---
Confidence            355789999999999999999999876543210       110000 00000                       00   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS  225 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~  225 (426)
                                     ....+.+.+|||+|+.++....   .   ..+  ..++++++|.|.....+-.. ..... .+..
T Consensus        50 ---------------~~~~~~l~~~d~~g~~~~~~~~---~---~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~i~~  105 (173)
T d2fn4a1          50 ---------------DGIPARLDILDTAGQEEFGAMR---E---QYM--RAGHGFLLVFAINDRQSFNE-VGKLFTQILR  105 (173)
T ss_dssp             ---------------TTEEEEEEEEECCCTTTTSCCH---H---HHH--HHCSEEEEEEETTCHHHHHH-HHHHHHHHHH
T ss_pred             ---------------CCeeeeeecccccccccccccc---c---hhh--ccceeeeeecccccccccch-hhhhhHHHHH
Confidence                           0233678899999998863211   1   111  23689999999965332211 11111 1112


Q ss_pred             HHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                      .....+.|+|||.||+|+.......  ......+.              +        . ...+++.+||++|.||.++|
T Consensus       106 ~~~~~~~p~ilvgnK~Dl~~~~~~~--~~~~~~~~--------------~--------~-~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1         106 VKDRDDFPVVLVGNKADLESQRQVP--RSEASAFG--------------A--------S-HHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             HHTSSCCCEEEEEECGGGGGGCCSC--HHHHHHHH--------------H--------H-TTCEEEECBTTTTBSHHHHH
T ss_pred             HhccCCCceEEEEEeechhhccccc--hhhhhHHH--------------H--------h-cCCEEEEEeCCCCcCHHHHH
Confidence            2224578999999999986543210  01111110              1        1 23578999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ..|.+.+..+
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=2e-17  Score=156.29  Aligned_cols=135  Identities=16%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.+.|+|+|+.|+|||||+.+|+.......+.+.+-.........|.               -.+.++....++..    
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~---------------E~~r~~si~~~~~~----   65 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQ---------------ERERGITITAAVTT----   65 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC----------------------------------CCCCCCCSEEE----
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHH---------------HHhcCCccccceee----
Confidence            44679999999999999999998776554443333221111111110               11233333323221    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                      +             .+++..+.|+||||+.+|...      +...+  ..+|.+|+|||+..|...++     ..+++.+
T Consensus        66 ~-------------~~~~~~~n~iDtPG~~dF~~e------~~~~l--~~~D~avlVvda~~Gv~~~T-----~~~w~~a  119 (276)
T d2bv3a2          66 C-------------FWKDHRINIIDAPGHVDFTIE------VERSM--RVLDGAIVVFDSSQGVEPQS-----ETVWRQA  119 (276)
T ss_dssp             E-------------EETTEEEEEECCCSSSSCSTT------HHHHH--HHCCEEEEEEETTTSSCHHH-----HHHHHHH
T ss_pred             e-------------ccCCeEEEEecCCchhhhHHH------HHHHH--HhhhheEEeccccCCcchhH-----HHHHHHH
Confidence            1             146789999999999998421      11222  23699999999999999987     4566778


Q ss_pred             hhccCCeEEEEecCCCCChH
Q 014354          228 YKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~  247 (426)
                      ...++|.|+++||+|+....
T Consensus       120 ~~~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2         120 EKYKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             HTTTCCEEEEEECTTSTTCC
T ss_pred             HHcCCCEEEEEecccccccc
Confidence            88999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.5e-17  Score=143.37  Aligned_cols=162  Identities=12%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++.+........        .. ...+...+                       ..      
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~--------~~-~~~~~~~i-----------------------~~------   43 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAE--------AA-GHTYDRSI-----------------------VV------   43 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC------------------CEEEEEEE-----------------------EE------
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCC--------ee-eeeeccee-----------------------ec------
Confidence            579999999999999999998875432100        00 00000000                       00      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-h
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-Y  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~  228 (426)
                                  ....+.+.+|||||+.++.       .+...+ -..+|++++|+|.+...+... ....+..+... .
T Consensus        44 ------------~~~~~~l~i~D~~g~e~~~-------~~~~~~-~~~~d~~ilv~d~t~~~s~~~-~~~~~~~i~~~~~  102 (168)
T d2gjsa1          44 ------------DGEEASLMVYDIWEQDGGR-------WLPGHC-MAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQ  102 (168)
T ss_dssp             ------------TTEEEEEEEEECC--------------CHHHH-HTSCSEEEEEEETTCHHHHHH-HHHHHHHHHHHCC
T ss_pred             ------------cccccceeeeecccccccc-------eecccc-hhhhhhhceeccccccccccc-cccccchhhcccc
Confidence                        0234688999999997752       111111 134799999999865322211 11111111111 1


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ...+|++||.||+|+........  .....+                  +    .. ...+++++||++|.||.++|..|
T Consensus       103 ~~~~piilvgnK~Dl~~~~~v~~--~~~~~~------------------~----~~-~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1         103 TDDVPIILVGNKSDLVRSREVSV--DEGRAC------------------A----VV-FDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             --CCCEEEEEECTTCGGGCCSCH--HHHHHH------------------H----HH-HTSEEEECBTTTTBSHHHHHHHH
T ss_pred             cccceEEEeecccchhhhcchhH--HHHHHH------------------H----Hh-cCCEEEEEeCCCCcCHHHHHHHH
Confidence            34689999999999876432110  011111                  0    11 13578999999999999999999


Q ss_pred             HHHHHHH
Q 014354          309 EESAQEF  315 (426)
Q Consensus       309 ~~~~~~~  315 (426)
                      .+.+...
T Consensus       158 ~~~i~~~  164 (168)
T d2gjsa1         158 VRQIRLR  164 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.70  E-value=2e-17  Score=145.46  Aligned_cols=158  Identities=17%  Similarity=0.194  Sum_probs=95.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      .+..+|+++|.+|||||||+++|........              .+ +..+.                      .....
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~--------------~~-t~~~~----------------------~~~~~   52 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT--------------IP-TVGFN----------------------VETVT   52 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE--------------EE-ETTEE----------------------EEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc--------------cc-eeeee----------------------EEEee
Confidence            3557899999999999999999987653210              00 11000                      00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      .....+.+|||||.....       ..... ....++++++|+|++.........   ..+...
T Consensus        53 ----------------~~~~~~~i~D~~g~~~~~-------~~~~~-~~~~~~~ii~v~D~s~~~~~~~~~---~~l~~~  105 (173)
T d1e0sa_          53 ----------------YKNVKFNVWDVGGQDKIR-------PLWRH-YYTGTQGLIFVVDCADRDRIDEAR---QELHRI  105 (173)
T ss_dssp             ----------------ETTEEEEEEEESCCGGGH-------HHHGG-GTTTCCEEEEEEETTCGGGHHHHH---HHHHHH
T ss_pred             ----------------ccceeeEEecCCCcchhh-------hHHHh-hhcccceEEEEEecccchhHHHHH---HHHHHH
Confidence                            234688999999987651       11111 113479999999986533222111   111121


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE  302 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~  302 (426)
                      +.   ...+|++||+||+|+........+...+.                     .  ... .....++++||++|+||.
T Consensus       106 ~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~---------------------~--~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_         106 INDREMRDAIILIFANKQDLPDAMKPHEIQEKLG---------------------L--TRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             HTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G--GGCCSSCEEEEECBTTTTBTHH
T ss_pred             hhhcccccceeeeeeecccccccccHHHHHHHHH---------------------H--HHHHhCCCEEEEeeCCCCcCHH
Confidence            21   34789999999999976433222221110                     0  000 113468999999999999


Q ss_pred             HHHHHHHHH
Q 014354          303 AYFKAVEES  311 (426)
Q Consensus       303 ~l~~~l~~~  311 (426)
                      +++++|.+.
T Consensus       163 e~~~~l~~~  171 (173)
T d1e0sa_         163 EGLTWLTSN  171 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999765

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.69  E-value=1.8e-17  Score=144.45  Aligned_cols=157  Identities=17%  Similarity=0.251  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|++|||||||+++|.+..+....             .| |..+...                   .+.      
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~-------------~~-T~~~~~~-------------------~~~------   43 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDM-------------IP-TVGFNMR-------------------KIT------   43 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------CC-CCSEEEE-------------------EEE------
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCcc-------------cc-cceeeee-------------------eee------
Confidence            47999999999999999999887643211             01 1111000                   000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--  227 (426)
                                   .++..+.+||+||+..+..      .....+  ..++++++|+|+.....   +..........+  
T Consensus        44 -------------~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~   99 (164)
T d1zd9a1          44 -------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEK---IEASKNELHNLLDK   99 (164)
T ss_dssp             -------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTC
T ss_pred             -------------eeeEEEEEeeccccccccc------cccccc--cccchhhcccccccccc---cchhhhhhhhhhhh
Confidence                         2346789999999866421      111112  45799999999864322   211111111222  


Q ss_pred             -hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          228 -YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       228 -~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                       ...++|++||+||+|+........+.+.+                     +..... ..+.+++++||++|.|++++++
T Consensus       100 ~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~---------------------~~~~~~-~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1         100 PQLQGIPVLVLGNKRDLPGALDEKELIEKM---------------------NLSAIQ-DREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             GGGTTCCEEEEEECTTSTTCCCHHHHHHHT---------------------TGGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred             hcccCCcEEEEEeccccchhhhHHHHHHHH---------------------HHHHHH-hCCCEEEEEeCcCCcCHHHHHH
Confidence             23578999999999987654322222111                     100000 1235789999999999999999


Q ss_pred             HHHHH
Q 014354          307 AVEES  311 (426)
Q Consensus       307 ~l~~~  311 (426)
                      +|.+.
T Consensus       158 ~l~~~  162 (164)
T d1zd9a1         158 WLIQH  162 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=145.17  Aligned_cols=163  Identities=12%  Similarity=0.127  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+.....       |....                              ........
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~-------~t~~~------------------------------~~~~~~~~   48 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYD-------PTIED------------------------------SYTKQCVI   48 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCC-------TTCCE------------------------------EEEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccC-------ccccc------------------------------ceeeeeee
Confidence            689999999999999999999876443211       11100                              00000000


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                      .            ...+.+.+|||+|+.++....      ...+  ..+|++++|.|.....+-.....-...+......
T Consensus        49 ~------------~~~~~~~~~d~~g~~~~~~~~------~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  108 (171)
T d2erya1          49 D------------DRAARLDILDTAGQEEFGAMR------EQYM--RTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR  108 (171)
T ss_dssp             T------------TEEEEEEEEECC----CCHHH------HHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             c------------ccccccccccccccccccccc------cccc--cccceEEEeeccccccchhhHHHHhHHHHhhccc
Confidence            0            123578899999998863211      1111  2369999999986532221111000112222334


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|.|||.||+|+.......  ......+..                      . ...+++.+||++|.||+++|..|.
T Consensus       109 ~~~p~ilvgnK~Dl~~~~~v~--~~~~~~~~~----------------------~-~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         109 DEFPMILIGNKADLDHQRQVT--QEEGQQLAR----------------------Q-LKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             SCCSEEEEEECTTCTTSCSSC--HHHHHHHHH----------------------H-TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEeccchhhhccch--HHHHHHHHH----------------------H-cCCEEEEEcCCCCcCHHHHHHHHH
Confidence            578999999999987653221  111111111                      1 135789999999999999999998


Q ss_pred             HHHHH
Q 014354          310 ESAQE  314 (426)
Q Consensus       310 ~~~~~  314 (426)
                      +.+..
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.69  E-value=1e-16  Score=147.18  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=71.6

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCC-eEEEEecCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P-~IlVlNKiD  242 (426)
                      .+..+.|+||||+.++.      ..+...  ...+|++|+|||+..++.+++.     ..+.++...++| +|+++||+|
T Consensus        87 ~~~~~~iiD~PGH~dfv------~~~~~g--~~~aD~ailVvda~~G~~~Qt~-----e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYT------RNMATG--ASTCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SSEEEEEEECCCSGGGH------HHHHHH--HTTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTT
T ss_pred             cceEEEEEeccchhhhh------hhhccc--cccCceEEEEeccccCcccchH-----HHHHHHHHcCCCEEEEEEEccc
Confidence            34679999999998862      222222  2568999999999999988873     455666777877 678999999


Q ss_pred             CCChHh--HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhh-hcCCceEEeecccCCCHHH
Q 014354          243 VAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       243 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vv~vSA~~g~gv~~  303 (426)
                      ++....  .......+..+...+                   .+ ...+++||+||++|.|+.+
T Consensus       154 ~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         154 LNGFDERVFESIKADYLKFAEGI-------------------AFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTT-------------------TCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccccceehhhhHHHHhhhhHhh-------------------ccCCCceEEEEEEcccCccCCc
Confidence            987432  222223333222210                   01 1235789999999999854

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.9e-17  Score=147.05  Aligned_cols=174  Identities=17%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||++++++..+.....       |.+.... ...                       +..   
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~-------~ti~~~~-~~~-----------------------~~~---   48 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------PTVFDNY-SAN-----------------------VMV---   48 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-------CCSCCEE-EEE-----------------------EEE---
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccc-------cceeece-eee-----------------------eec---
Confidence            355789999999999999999999876543211       1111000 000                       000   


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                     ......+.+||++|+..+.......        -..++++++|+|.....+   |..-...+...
T Consensus        49 ---------------~~~~~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s---f~~i~~~~~~~  102 (183)
T d1mh1a_          49 ---------------DGKPVNLGLWDTAGQEDYDRLRPLS--------YPQTDVSLICFSLVSPAS---FENVRAKWYPE  102 (183)
T ss_dssp             ---------------TTEEEEEEEECCCCSGGGTTTGGGG--------CTTCSEEEEEEETTCHHH---HHHHHHTHHHH
T ss_pred             ---------------cCcceEEEeecccccccchhhhhhc--------ccccceeeeeeccchHHH---HHHHHHHHHHH
Confidence                           0233578899999997763221111        134799999999964322   21111111111


Q ss_pred             H--hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          227 L--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       227 l--~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                      +  ...++|+|||+||+|+..............            ........+..+...+...+++.+||++|.||.++
T Consensus       103 ~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~  170 (183)
T d1mh1a_         103 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  170 (183)
T ss_dssp             HHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HHHhCCCCcEEEEeecccchhhhhhhhhhhhcc------------ccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHH
Confidence            2  234689999999999876643211110000            00111111222222234578999999999999999


Q ss_pred             HHHHHHHH
Q 014354          305 FKAVEESA  312 (426)
Q Consensus       305 ~~~l~~~~  312 (426)
                      |..|.+.+
T Consensus       171 F~~l~~~i  178 (183)
T d1mh1a_         171 FDEAIRAV  178 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.3e-17  Score=144.77  Aligned_cols=163  Identities=18%  Similarity=0.192  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+.....       |.+.       ......                 ....     
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~-------~t~~-------~~~~~~-----------------~~~~-----   46 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-------ATIG-------ADFLTK-----------------EVMV-----   46 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCC-------CCCS-------EEEEEE-----------------EEES-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcC-------Cccc-------eeeeee-----------------eeee-----
Confidence            579999999999999999999876443111       1110       000000                 0000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHHH-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSIL-  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~l-  227 (426)
                                  ......+.+|||||..+.......        ....++++++++|.....+.... ...+ .+.... 
T Consensus        47 ------------~~~~~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~  105 (184)
T d1vg8a_          47 ------------DDRLVTMQIWDTAGQERFQSLGVA--------FYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQAS  105 (184)
T ss_dssp             ------------SSCEEEEEEEEECSSGGGSCSCCG--------GGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHC
T ss_pred             ------------CCceEEEEeeecCCcccccccccc--------cccCccEEEEeecccchhhhhcc-hhhHHHHHHHhc
Confidence                        012357889999998775322211        11457999999998643221111 0001 111111 


Q ss_pred             --hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 --YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 --~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                        ....+|+|||+||+|+.......+....+.                         ......+++++||++|.||.++|
T Consensus       106 ~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_         106 PRDPENFPFVVLGNKIDLENRQVATKRAQAWC-------------------------YSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH-------------------------HHTTSCCEEECBTTTTBSHHHHH
T ss_pred             cccccCCCEEEEEEeecccccchhHHHHHHHH-------------------------HHhcCCeEEEEcCCCCcCHHHHH
Confidence              134689999999999876542221211111                         01235789999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ++|.+.+..
T Consensus       161 ~~l~~~i~~  169 (184)
T d1vg8a_         161 QTIARNALK  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998876544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.6e-17  Score=144.48  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||+++|++..+.....             + +...+....                .+..      
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~-------------~-~~~~~~~~~----------------~~~~------   49 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG-------------A-TIGVDFMIK----------------TVEI------   49 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------------C-CCSEEEEEE----------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc-------------c-cccceEEEE----------------EEEE------
Confidence            689999999999999999999876543210             0 110000000                0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ....+.+.+|||||+.++.       .+...+ -..++++++|+|.....+..... .....+.....
T Consensus        50 ------------~~~~~~l~i~Dt~G~e~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~  108 (171)
T d2ew1a1          50 ------------NGEKVKLQIWDTAGQERFR-------SITQSY-YRSANALILTYDITCEESFRCLP-EWLREIEQYAS  108 (171)
T ss_dssp             ------------TTEEEEEEEEEECCSGGGH-------HHHGGG-STTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSC
T ss_pred             ------------CCEEEEEEEEECCCchhhH-------HHHHHH-HhccceEEEeeecccchhhhhhh-hhhhhhccccc
Confidence                        0133578899999987652       111111 13478999999986533221111 11111111234


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|.|||.||+|+........  .....+.                      .. ...+++++||++|.||+++|..|.
T Consensus       109 ~~~~~ilvgnK~D~~~~~~v~~--~~~~~~~----------------------~~-~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1         109 NKVITVLVGNKIDLAERREVSQ--QRAEEFS----------------------EA-QDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             TTCEEEEEEECGGGGGGCSSCH--HHHHHHH----------------------HH-HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccEEEEEeecccccccchhh--hHHHHHH----------------------Hh-CCCEEEEEccCCCCCHHHHHHHHH
Confidence            5689999999999875432110  1111111                      11 135799999999999999998877


Q ss_pred             HHHH
Q 014354          310 ESAQ  313 (426)
Q Consensus       310 ~~~~  313 (426)
                      ..+.
T Consensus       164 ~~l~  167 (171)
T d2ew1a1         164 CRLI  167 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.68  E-value=8.3e-17  Score=138.19  Aligned_cols=158  Identities=18%  Similarity=0.140  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|++|||||||+|+|++..+....              +...                       ....+..    
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~--------------~~~~-----------------------~~~~~~~----   40 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTI--------------PTIG-----------------------FNVETVE----   40 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCC--------------CCSS-----------------------CCEEEEE----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccc--------------ccee-----------------------eEEEEEe----
Confidence            6899999999999999999987654210              0000                       0000000    


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  .....+.++|+||.....       . ........++++++++|........................
T Consensus        41 ------------~~~~~~~~~d~~g~~~~~-------~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  100 (160)
T d1r8sa_          41 ------------YKNISFTVWDVGGQDKIR-------P-LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR  100 (160)
T ss_dssp             ------------CSSCEEEEEECCCCGGGH-------H-HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             ------------eeeEEEEEecCCCcccch-------h-hhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhccc
Confidence                        245789999999987741       1 11111245789999999865432221111111111111234


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      ..|+++|.||.|+.......++....                     +... ......+++++||++|+||++++++|.+
T Consensus       101 ~~~i~~v~~k~d~~~~~~~~~i~~~~---------------------~~~~-~~~~~~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         101 DAVLLVFANKQDLPNAMNAAEITDKL---------------------GLHS-LRHRNWYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             TCEEEEEEECTTSTTCCCHHHHHHHT---------------------TGGG-CSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CceEEEEeecccccccccHHHHHHHH---------------------HHHH-HhhCCCEEEEeECCCCCCHHHHHHHHHh
Confidence            68999999999988754322222111                     0000 0122457999999999999999999986


Q ss_pred             H
Q 014354          311 S  311 (426)
Q Consensus       311 ~  311 (426)
                      .
T Consensus       159 ~  159 (160)
T d1r8sa_         159 Q  159 (160)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2e-16  Score=137.74  Aligned_cols=159  Identities=16%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+....       .|.+........                       ...      
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~-------~~ti~~~~~~~~-----------------------~~~------   46 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDY-------KKTIGVDFLERQ-----------------------IQV------   46 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCS-------SCCCSSSEEEEE-----------------------EEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc-------ccccccccceee-----------------------eee------
Confidence            47999999999999999999976543211       111110000000                       000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.+|||||+.++....   .   ..+  ..++++++|+|.....+-..    ...+...+. 
T Consensus        47 ------------~~~~~~~~i~d~~g~~~~~~~~---~---~~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~i~~  102 (164)
T d1z2aa1          47 ------------NDEDVRLMLWDTAGQEEFDAIT---K---AYY--RGAQACVLVFSTTDRESFEA----ISSWREKVVA  102 (164)
T ss_dssp             ------------TTEEEEEEEECCTTGGGTTCCC---H---HHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHHHH
T ss_pred             ------------cCceeeeeeeccCCccchhhhh---h---hhh--ccCceEEEEEeccchhhhhh----cccccccccc
Confidence                        0123678999999998763211   1   111  35799999999865332211    112222222 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|+|||+||+|+.......  ....+.+.                      ..+ ..+++++||++|.||+++|+.
T Consensus       103 ~~~~~~iilVgnK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sak~g~~v~e~f~~  157 (164)
T d1z2aa1         103 EVGDIPTALVQNKIDLLDDSCIK--NEEAEGLA----------------------KRL-KLRFYRTSVKEDLNVSEVFKY  157 (164)
T ss_dssp             HHCSCCEEEEEECGGGGGGCSSC--HHHHHHHH----------------------HHH-TCEEEECBTTTTBSSHHHHHH
T ss_pred             cCCCceEEEeeccCCcccceeee--ehhhHHHH----------------------HHc-CCEEEEeccCCCcCHHHHHHH
Confidence             3479999999999987653211  01111111                      111 257999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       158 l~~~~l  163 (164)
T d1z2aa1         158 LAEKHL  163 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=8.5e-17  Score=151.45  Aligned_cols=131  Identities=23%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      +.|+|+|+.|+|||||+.+|+.......+.+.+..         +++..|..      ..-++.+.....+.++.     
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~---------g~~~~D~~------~~E~~r~~ti~~~~~~~-----   62 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEE---------GTTTTDYT------PEAKLHRTTVRTGVAPL-----   62 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGG---------TCCSSCCS------HHHHHTTSCCSCEEEEE-----
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchh---------ccccccch------HHHHHhCCeEEeecccc-----
Confidence            57999999999999999999866533322211111         11111100      00113333333332221     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  .+++..+.||||||+.+|.      ..+...+  ..+|.+|+|||+..|...++     ...+..+.+
T Consensus        63 ------------~~~~~~~n~iDtPGh~dF~------~e~~~al--~~~D~avlvvda~~Gv~~~t-----~~~~~~~~~  117 (267)
T d2dy1a2          63 ------------LFRGHRVFLLDAPGYGDFV------GEIRGAL--EAADAALVAVSAEAGVQVGT-----ERAWTVAER  117 (267)
T ss_dssp             ------------EETTEEEEEEECCCSGGGH------HHHHHHH--HHCSEEEEEEETTTCSCHHH-----HHHHHHHHH
T ss_pred             ------------cccccceeEEccCchhhhh------hhhhhhh--cccCceEEEeeccCCccchh-----HHHHHhhhh
Confidence                        1466789999999999873      2222222  33699999999999999877     445677788


Q ss_pred             ccCCeEEEEecCCCCC
Q 014354          230 TRLPLVLAFNKTDVAQ  245 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~  245 (426)
                      .++|.++++||+|...
T Consensus       118 ~~~p~~i~iNk~D~~~  133 (267)
T d2dy1a2         118 LGLPRMVVVTKLDKGG  133 (267)
T ss_dssp             TTCCEEEEEECGGGCC
T ss_pred             cccccccccccccccc
Confidence            9999999999999753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.68  E-value=6.2e-17  Score=141.84  Aligned_cols=163  Identities=14%  Similarity=0.215  Sum_probs=92.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||++++++..+.....       |.+.. .+...                       +..    
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~-------~T~~~-~~~~~-----------------------~~~----   47 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE-------PTKAD-SYRKK-----------------------VVL----   47 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC-------TTCCE-EEEEE-----------------------EEE----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccC-------Ccccc-ccccc-----------------------ccc----
Confidence            34689999999999999999999876443211       11100 00000                       000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~  226 (426)
                                    ....+.+.+|||||+.+..       .+...+. ..++++++|.|.....+... ....+ .+.+.
T Consensus        48 --------------~~~~~~l~i~d~~g~~~~~-------~~~~~~~-~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~  104 (168)
T d1u8za_          48 --------------DGEEVQIDILDTAGQEDYA-------AIRDNYF-RSGEGFLCVFSITEMESFAA-TADFREQILRV  104 (168)
T ss_dssp             --------------TTEEEEEEEEECCC---CH-------HHHHHHH-HHCSEEEEEEETTCHHHHHH-HHHHHHHHHHH
T ss_pred             --------------ccccccccccccccccchh-------hhhhhcc-cccceeEEEeeccchhhhhh-HHHHHHHHHHh
Confidence                          0233678999999997752       1221111 23689999999865322211 00001 11111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ....++|++||+||+|+.......  .+....+..                     .  .+.+++++||++|.||+++|.
T Consensus       105 ~~~~~~piiivgnK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gv~e~f~  159 (168)
T d1u8za_         105 KEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVFF  159 (168)
T ss_dssp             HCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHHH
T ss_pred             hCCCCCcEEEEecccccccccccc--HHHHHHHHH---------------------H--cCCeEEEEcCCCCcCHHHHHH
Confidence            223578999999999986542210  011111111                     1  135689999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      .|.+.+.
T Consensus       160 ~l~~~i~  166 (168)
T d1u8za_         160 DLMREIR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.4e-17  Score=143.05  Aligned_cols=163  Identities=18%  Similarity=0.166  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||++++++..+....       .|.... .+...+.                       .    
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~-------~~t~~~-~~~~~~~-----------------------~----   47 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY-------DPTIEN-TFTKLIT-----------------------V----   47 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-------CSSCCE-EEEEEEE-----------------------E----
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCccc-------Ccceec-ccceEEe-----------------------c----
Confidence            4468999999999999999999876543211       011100 0000000                       0    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ....+.+.+|||+|..++......        ....++++++|.|.....+-.....-...+....
T Consensus        48 --------------~~~~~~l~i~d~~g~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (167)
T d1xtqa1          48 --------------NGQEYHLQLVDTAGQDEYSIFPQT--------YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV  105 (167)
T ss_dssp             --------------TTEEEEEEEEECCCCCTTCCCCGG--------GTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CcEEEEeeecccccccccccccch--------hhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcc
Confidence                          023367889999999876321111        1134799999999865432211110001122222


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|++||.||+|+.......  .+....+.              +        .+ +.+++++||++|.||+++|..
T Consensus       106 ~~~~~piilvgnK~Dl~~~r~v~--~~~~~~~a--------------~--------~~-~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1         106 GKVQIPIMLVGNKKDLHMERVIS--YEEGKALA--------------E--------SW-NAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             CSSCCCEEEEEECTTCGGGCCSC--HHHHHHHH--------------H--------HH-TCEEEECCTTCHHHHHHHHHH
T ss_pred             cccccceeeeccccccccccchh--HHHHHHHH--------------H--------Hc-CCEEEEEecCCCCCHHHHHHH
Confidence            34578999999999986543210  01111111              1        11 256899999999999999998


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |...+
T Consensus       161 li~~~  165 (167)
T d1xtqa1         161 IILEA  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-17  Score=141.29  Aligned_cols=162  Identities=16%  Similarity=0.182  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+.....       |.+.       ......                -....     
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~-------~~~~-------~~~~~~----------------~~~~~-----   45 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ-------ATIG-------IDFLSK----------------TMYLE-----   45 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCCS-------EEEEEE----------------EEECS-----
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccc-------ccee-------eeccce----------------eeccC-----
Confidence            479999999999999999999876543211       1110       000000                00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   ...+.+.+|||+|+.++...       ... .-..++++++|.|.....+... ....+........
T Consensus        46 -------------~~~~~~~i~d~~g~~~~~~~-------~~~-~~~~~~~~ilv~d~~~~~s~~~-i~~~~~~~~~~~~  103 (164)
T d1yzqa1          46 -------------DRTIRLQLWDTAGQERFRSL-------IPS-YIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERG  103 (164)
T ss_dssp             -------------SCEEEEEEEEECCSGGGGGG-------HHH-HHTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHT
T ss_pred             -------------CCceeeeecccCCcchhccc-------hHH-HhhccceEEEeeccccccchhh-hHhhHHHHHHhcC
Confidence                         12357789999999875211       111 1145799999999865432211 1111111111223


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .+.|++||.||+|+.......  .+....+..                      . ...+++++||++|.||+++|..|.
T Consensus       104 ~~~~iilvgnK~Dl~~~~~~~--~~~~~~~~~----------------------~-~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1         104 SDVIIMLVGNKTDLADKRQVS--IEEGERKAK----------------------E-LNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             TSSEEEEEEECTTCGGGCCSC--HHHHHHHHH----------------------H-TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEEEecccchhhhhhhh--HHHHHHHHH----------------------H-cCCEEEEecCCCCcCHHHHHHHHH
Confidence            578999999999987543211  111111111                      1 235799999999999999999999


Q ss_pred             HHHH
Q 014354          310 ESAQ  313 (426)
Q Consensus       310 ~~~~  313 (426)
                      +.+|
T Consensus       159 ~~l~  162 (164)
T d1yzqa1         159 AALP  162 (164)
T ss_dssp             HHSC
T ss_pred             HhhC
Confidence            8765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.9e-17  Score=144.64  Aligned_cols=163  Identities=13%  Similarity=0.119  Sum_probs=94.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||++++++..+.....       |.+.... ...                       +..    
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~-------~t~~~~~-~~~-----------------------~~~----   46 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD-------PTIEDFY-RKE-----------------------IEV----   46 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-------TTCCEEE-EEE-----------------------EEE----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccC-------Cceeeee-eee-----------------------eec----
Confidence            34689999999999999999999876543211       1110000 000                       000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......+.+||++|.....      ......+  ..++++++|.|.....+-.....-...+....
T Consensus        47 --------------~~~~~~l~~~d~~g~~~~~------~~~~~~~--~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~  104 (167)
T d1kaoa_          47 --------------DSSPSVLEILDTAGTEQFA------SMRDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK  104 (167)
T ss_dssp             --------------TTEEEEEEEEECCCTTCCH------HHHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred             --------------CcceEeeccccCCCccccc------cchHHHh--hcccceeeeeeecchhhhhhhhchhhhhhhhc
Confidence                          0123578899999987752      1111112  23589999999864332211110001111111


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      ...++|+|||+||+|+........  .....+                  +    .. .+.+++++||++|.||+++|..
T Consensus       105 ~~~~~piilvgnK~Dl~~~~~~~~--~~~~~~------------------~----~~-~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_         105 RYEKVPVILVGNKVDLESEREVSS--SEGRAL------------------A----EE-WGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             TTSCCCEEEEEECGGGGGGCCSCH--HHHHHH------------------H----HH-HTSCEEEECTTCHHHHHHHHHH
T ss_pred             cCCCCCEEEEEEccchhhcccchH--HHHHHH------------------H----HH-cCCeEEEECCCCCcCHHHHHHH
Confidence            235689999999999876432110  111111                  0    01 1357999999999999999999


Q ss_pred             HHHHH
Q 014354          308 VEESA  312 (426)
Q Consensus       308 l~~~~  312 (426)
                      |.+.+
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.6e-16  Score=139.10  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||+++|++..+.....             + +..++...                ..+...     
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~-------------~-~~~~~~~~----------------~~~~~~-----   50 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFV-------------S-TVGIDFKV----------------KTIYRN-----   50 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCC-------------C-CCSEEEEE----------------EEEEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccc-------------c-ccccceee----------------EEEEee-----
Confidence            679999999999999999999876442110             0 10000000                000000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.||||||+.++.       .+...+ -..+|++|+|+|.....+... .............
T Consensus        51 -------------~~~~~l~~wDt~G~e~~~-------~~~~~~-~~~ad~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  108 (169)
T d3raba_          51 -------------DKRIKLQIWDTAGQERYR-------TITTAY-YRGAMGFILMYDITNEESFNA-VQDWSTQIKTYSW  108 (169)
T ss_dssp             -------------TEEEEEEEEEECCSGGGH-------HHHHTT-TTTCCEEEEEEETTCHHHHHT-HHHHHHHHHHHCC
T ss_pred             -------------cceEEEEEEECCCchhhH-------HHHHHH-HhcCCEEEEEEECccchhhhh-hhhhhhhhhcccC
Confidence                         123578899999987752       222221 134799999999865322111 1111111222234


Q ss_pred             ccCCeEEEEecCCCCChHhH-HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ...|+++|+||+|+...... .+....+.                         .. ...+++.+||++|.||.++|+.|
T Consensus       109 ~~~~iivv~nK~D~~~~~~v~~~~~~~~~-------------------------~~-~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_         109 DNAQVLLVGNKCDMEDERVVSSERGRQLA-------------------------DH-LGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             SCCEEEEEEECTTCGGGCCSCHHHHHHHH-------------------------HH-HTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CcceEEEEEeecccccccccchhhhHHHH-------------------------HH-cCCEEEEecCCCCcCHHHHHHHH
Confidence            56888999999997654321 11111110                         01 12579999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.+.
T Consensus       163 ~~~i~  167 (169)
T d3raba_         163 VDVIC  167 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=140.24  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||+++|++..+.....       |       +.......                 .+..      
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~-------~-------~~~~~~~~-----------------~~~~------   46 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-------P-------TIEDSYRK-----------------QVVI------   46 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCC-------C-------CSEEEEEE-----------------EEEE------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccC-------C-------ccceeecc-----------------ceee------
Confidence            679999999999999999999876543211       0       10000000                 0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--  227 (426)
                                  ......+.+||++|+..+..      .....+  ..++++++|.|.....+   |.. ...+...+  
T Consensus        47 ------------~~~~~~l~~~d~~~~~~~~~------~~~~~~--~~~~~~iiv~d~~~~~s---~~~-~~~~~~~i~~  102 (166)
T d1ctqa_          47 ------------DGETCLLDILDTAGQEEYSA------MRDQYM--RTGEGFLCVFAINNTKS---FED-IHQYREQIKR  102 (166)
T ss_dssp             ------------TTEEEEEEEEEECCCGGGHH------HHHHHH--HHCSEEEEEEETTCHHH---HHT-HHHHHHHHHH
T ss_pred             ------------eceeeeeeeeeccCcccccc------chhhhh--hcccccceeeccccccc---HHH-HHHHHHHHHH
Confidence                        02336788999999977521      111112  23589999999864322   111 11111212  


Q ss_pred             --hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          228 --YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       228 --~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                        ...++|+|+|.||+|+.......+.   ...+.                      ..+ ..+++.+||++|.||.++|
T Consensus       103 ~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~----------------------~~~-~~~~~e~Sak~g~gi~e~f  156 (166)
T d1ctqa_         103 VKDSDDVPMVLVGNKCDLAARTVESRQ---AQDLA----------------------RSY-GIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             HHTCSSCCEEEEEECTTCSCCCSCHHH---HHHHH----------------------HHH-TCCEEECCTTTCTTHHHHH
T ss_pred             hcCCCCCeEEEEecccccccccccHHH---HHHHH----------------------HHh-CCeEEEEcCCCCcCHHHHH
Confidence              2346899999999998764321111   11111                      111 2579999999999999999


Q ss_pred             HHHHHHHH
Q 014354          306 KAVEESAQ  313 (426)
Q Consensus       306 ~~l~~~~~  313 (426)
                      ..|.+.+.
T Consensus       157 ~~i~~~i~  164 (166)
T d1ctqa_         157 YTLVREIR  164 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.67  E-value=2.8e-16  Score=137.72  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||+++|.+.....            ........                         ..+..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~------------~~~~~~~~-------------------------~~~~~   55 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH------------TSPTIGSN-------------------------VEEIV   55 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE------------EECCSCSS-------------------------CEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCc------------ccccccee-------------------------EEEEe
Confidence            456889999999999999999999876431            00000000                         00000


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+.++.++|++|.........  .    .  ...++.+++|+|....................
T Consensus        56 ----------------~~~~~~~~~d~~~~~~~~~~~~--~----~--~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~  111 (177)
T d1zj6a1          56 ----------------INNTRFLMWDIGGQESLRSSWN--T----Y--YTNTEFVIVVVDSTDRERISVTREELYKMLAH  111 (177)
T ss_dssp             ----------------ETTEEEEEEECCC----CGGGH--H----H--HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS
T ss_pred             ----------------ecceEEEEeccccccccccchh--h----h--hccceeeeeecccccccchhhhhhhhhhhhhc
Confidence                            2346889999999866421111  1    1  13468999999987654432222111111222


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      ......|.+||+||+|+.......++...+.                     .. .......+++++||++|+|+.++++
T Consensus       112 ~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~---------------------~~-~~~~~~~~~~~~Sa~tg~Gi~e~~~  169 (177)
T d1zj6a1         112 EDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LT-SIKDHQWHIQACCALTGEGLCQGLE  169 (177)
T ss_dssp             GGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GG-GCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             ccccceEEEEEEEcccccccCcHHHHHHHHH---------------------HH-hhHhcCCEEEEEeCCCCCCHHHHHH
Confidence            2246789999999999876543322222211                     00 0112346799999999999999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      +|.+.+
T Consensus       170 ~L~~~l  175 (177)
T d1zj6a1         170 WMMSRL  175 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=138.91  Aligned_cols=161  Identities=18%  Similarity=0.247  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+....              +.+......                  .....    .
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~--------------~~~~~~~~~------------------~~~~~----~   48 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADC--------------PHTIGVEFG------------------TRIIE----V   48 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------TTSCCCCEE------------------EEEEE----E
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--------------cccccccce------------------eEEEE----E
Confidence            67999999999999999999987644311              111100000                  00000    0


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ......+.+|||||+..+.       .+...+ ...+|++++|.|..+..+-. ........+.....
T Consensus        49 ------------~~~~~~l~i~D~~g~~~~~-------~~~~~~-~~~~d~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~  107 (166)
T d1z0fa1          49 ------------SGQKIKLQIWDTAGQERFR-------AVTRSY-YRGAAGALMVYDITRRSTYN-HLSSWLTDARNLTN  107 (166)
T ss_dssp             ------------TTEEEEEEEEECTTGGGTC-------HHHHHH-HHTCSEEEEEEETTCHHHHH-THHHHHHHHHHHSC
T ss_pred             ------------CCEEEEEEEeccCCchhHH-------HHHHHH-hcCCcEEEEEeccCchHHHH-HHHHHHHHHHhhcc
Confidence                        0233578999999987752       122111 13478999999986532211 11111112222234


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|+++|.||+|+.......  .+....+.                      .. ...+++.+||++|.||.++|..|.
T Consensus       108 ~~~~iilvgnK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         108 PNTVIILIGNKADLEAQRDVT--YEEAKQFA----------------------EE-NGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             TTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccceEEEEcccccchhhcccH--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            568899999999986543221  11111111                      11 135799999999999999999987


Q ss_pred             HHH
Q 014354          310 ESA  312 (426)
Q Consensus       310 ~~~  312 (426)
                      +.+
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-16  Score=139.68  Aligned_cols=161  Identities=15%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       +.........                       .+...     
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~-------~~~~~~~~~~-----------------------~~~~~-----   49 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGVEFATR-----------------------SIQVD-----   49 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC----------CCCSCEEEEE-----------------------EEEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc-------ccccceeeeE-----------------------EEEEC-----
Confidence            579999999999999999999876442110       0000000000                       00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.||||||..++.......        ...++++|+|+|.....+-.. ....+..+.....
T Consensus        50 -------------~~~~~~~i~d~~g~e~~~~~~~~~--------~~~~~~~i~v~d~~~~~S~~~-~~~~~~~i~~~~~  107 (175)
T d2f9la1          50 -------------GKTIKAQIWDTAGQERYRRITSAY--------YRGAVGALLVYDIAKHLTYEN-VERWLKELRDHAD  107 (175)
T ss_dssp             -------------TEEEEEEEEECSSGGGTTCCCHHH--------HTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSC
T ss_pred             -------------CEEEEEEecccCCcHHHHHHHHHH--------hhccCeEEEEEECCCcccchh-HHHHHHHHHHhcC
Confidence                         123578899999997753211111        144789999999865322111 1111111122233


Q ss_pred             ccCCeEEEEecCCCCChHhHH-HHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      .++|++||.||+|+....... .......                          .....+++++||++|.|+.++|..+
T Consensus       108 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~--------------------------~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1         108 SNIVIMLVGNKSDLRHLRAVPTDEARAFA--------------------------EKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             TTCEEEEEEECTTCGGGCCSCHHHHHHHH--------------------------HHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCcEEEEEeeecccccccchHHHHHHhh--------------------------cccCceEEEEecCCCcCHHHHHHHH
Confidence            568999999999987643211 1111110                          0134679999999999999999988


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      ...+.
T Consensus       162 ~~~i~  166 (175)
T d2f9la1         162 LTEIY  166 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.8e-17  Score=140.46  Aligned_cols=163  Identities=12%  Similarity=0.158  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||+++++...+.....       |.+.. .+...+                       ..    
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~-------~t~~~-~~~~~~-----------------------~~----   46 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYD-------PTIED-SYRKQV-----------------------EV----   46 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC-------CCSEE-EEEEEE-----------------------ES----
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccC-------Ccccc-ccceeE-----------------------Ee----
Confidence            34689999999999999999999887543211       11100 000000                       00    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~  226 (426)
                                    ......+.+||++|+.......      ...+  ..++++++|+|.....+-.. +...+. +...
T Consensus        47 --------------~~~~~~~~~~d~~g~~~~~~~~------~~~~--~~~~~~ilv~d~~~~~sf~~-~~~~~~~~~~~  103 (167)
T d1c1ya_          47 --------------DCQQCMLEILDTAGTEQFTAMR------DLYM--KNGQGFALVYSITAQSTFND-LQDLREQILRV  103 (167)
T ss_dssp             --------------SSCEEEEEEEEECSSCSSTTHH------HHHH--HHCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred             --------------eeeEEEeccccccCcccccccc------cccc--cccceeEEeeeccchhhhHh-HHHHHHHHHHh
Confidence                          0233578999999998762111      1122  23589999999975432211 111111 1111


Q ss_pred             HhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       227 l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                      .....+|.|||.||+|+........  +....+.                      ..+...+++.+||++|.||.++|.
T Consensus       104 ~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~----------------------~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_         104 KDTEDVPMILVGNKCDLEDERVVGK--EQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             HCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             cCCCCCeEEEEEEecCcccccccch--hHHHHHH----------------------HHhCCCEEEEEcCCCCcCHHHHHH
Confidence            1234689999999999876532110  0111110                      112456799999999999999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      .|.+.+
T Consensus       160 ~l~~~i  165 (167)
T d1c1ya_         160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=140.06  Aligned_cols=164  Identities=17%  Similarity=0.226  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....             | +........                .+...     
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~-------------~-t~~~~~~~~----------------~~~~~-----   50 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSN-------------H-TIGVEFGSK----------------IINVG-----   50 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCC-------------C-CSEEEEEEE----------------EEEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc-------------c-ccccceeeE----------------EEEec-----
Confidence            579999999999999999999876442111             0 000000000                00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.+|||||+.++.       .+.+.+ ...++++++|+|.......... ............
T Consensus        51 -------------~~~~~~~i~D~~G~~~~~-------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~  108 (174)
T d2bmea1          51 -------------GKYVKLQIWDTAGQERFR-------SVTRSY-YRGAAGALLVYDITSRETYNAL-TNWLTDARMLAS  108 (174)
T ss_dssp             -------------TEEEEEEEEEECCSGGGH-------HHHHTT-STTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSC
T ss_pred             -------------CcceeEEEEECCCchhhh-------hhHHHH-hhhCCEEEEEEecccchhHHHH-hhhhcccccccC
Confidence                         123578899999987752       222211 1357999999998754322111 111111112234


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|+++|.||+|+.........  ....+..                       ...++++.+||++|.|++++|.+|.
T Consensus       109 ~~~piivv~nK~D~~~~~~~~~~--~~~~~~~-----------------------~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         109 QNIVIILCGNKKDLDADREVTFL--EASRFAQ-----------------------ENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCHH--HHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CceEEEEEEecccccchhchhhh--HHHHHHH-----------------------hCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            57999999999998654321111  1111110                       1236799999999999999999998


Q ss_pred             HHHHHH
Q 014354          310 ESAQEF  315 (426)
Q Consensus       310 ~~~~~~  315 (426)
                      +.+...
T Consensus       164 ~~i~~~  169 (174)
T d2bmea1         164 RKILNK  169 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7e-17  Score=141.80  Aligned_cols=157  Identities=18%  Similarity=0.230  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+......       .+       .++.....                 ...     
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~-------Ti-------~~~~~~~~-----------------~~~-----   47 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA-------TL-------GVEVHPLV-----------------FHT-----   47 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEE-------ET-------TEEEEEEE-----------------ECB-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccc-------ce-------eccccccc-----------------ccc-----
Confidence            4799999999999999999988765432211       11       01100000                 000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-h
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-Y  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-~  228 (426)
                                  ......+.+|||||...+......        ....++++++|.|.+...+-...    ..+...+ .
T Consensus        48 ------------~~~~~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~Sf~~~----~~~~~~~~~  103 (170)
T d1i2ma_          48 ------------NRGPIKFNVWDTAGQEKFGGLRDG--------YYIQAQCAIIMFDVTSRVTYKNV----PNWHRDLVR  103 (170)
T ss_dssp             ------------TTCCEEEEEEECTTHHHHSSCGGG--------GTTTCCEEEEEEETTSGGGGTTH----HHHHHHHHH
T ss_pred             ------------ccccccccccccccccccceecch--------hcccccchhhccccccccccchh----HHHHHHHhh
Confidence                        023467899999998775221110        11347999999998764332111    1111111 1


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|+++|+||+|+.......+... .                          ....+.+++++||++|.||.++|.+
T Consensus       104 ~~~~~piilvgnK~Dl~~~~~~~~~~~-~--------------------------~~~~~~~~~e~Sak~~~~v~e~f~~  156 (170)
T d1i2ma_         104 VCENIPIVLCGNKVDIKDRKVKAKSIV-F--------------------------HRKKNLQYYDISAKSNYNFEKPFLW  156 (170)
T ss_dssp             HHCSCCEEEEEECCCCSCSCCTTTSHH-H--------------------------HSSCSSEEEEEBTTTTBTTTHHHHH
T ss_pred             ccCCCceeeecchhhhhhhhhhhHHHH-H--------------------------HHHcCCEEEEEeCCCCCCHHHHHHH
Confidence             34799999999999976542111100 0                          0123467999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       157 l~~~l~  162 (170)
T d1i2ma_         157 LARKLI  162 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2e-16  Score=141.82  Aligned_cols=164  Identities=15%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||+++|++..+.....       |.........                       .+..      
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~-------~t~~~~~~~~-----------------------~i~~------   50 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYI-------STIGVDFKIK-----------------------TVEL------   50 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCC-------CSSCCCEEEE-----------------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcC-------CccceeEEEE-----------------------EEEE------
Confidence            689999999999999999999876443111       1110000000                       0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ....+.+.||||||+.++......      .+  ..++++|+|+|.+......... .....+.....
T Consensus        51 ------------~~~~~~l~i~Dt~G~e~~~~~~~~------~~--~~a~~~i~v~d~t~~~s~~~~~-~~~~~~~~~~~  109 (194)
T d2bcgy1          51 ------------DGKTVKLQIWDTAGQERFRTITSS------YY--RGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYAT  109 (194)
T ss_dssp             ------------TTEEEEEEEECCTTTTTTTCCCGG------GG--TTCSEEEEEEETTCHHHHHHHH-HHHHHHHHHSC
T ss_pred             ------------eeEEEEEEEEECCCchhhHHHHHH------Hh--ccCCEEEEEEeCcchhhhhhHh-hhhhhhhhccc
Confidence                        023367889999999876321111      11  3479999999986533222111 11111222335


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ..+|+|||.||+|+........  .....+.                       .....+++++||++|.||.++|+.|.
T Consensus       110 ~~~~iilv~nK~D~~~~~~~~~--~~~~~~~-----------------------~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1         110 STVLKLLVGNKCDLKDKRVVEY--DVAKEFA-----------------------DANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             TTCEEEEEEECTTCTTTCCSCH--HHHHHHH-----------------------HHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEEEEeccccccccchhH--HHHhhhh-----------------------hccCcceEEEecCcCccHHHHHHHHH
Confidence            5789999999999987542211  1111000                       11346799999999999999999998


Q ss_pred             HHHHHH
Q 014354          310 ESAQEF  315 (426)
Q Consensus       310 ~~~~~~  315 (426)
                      +.+.+.
T Consensus       165 ~~i~~~  170 (194)
T d2bcgy1         165 RQIKES  170 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.9e-17  Score=142.20  Aligned_cols=164  Identities=18%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+++|++..+.....           ... +......                  .+..     
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~-----------~~~-~~~~~~~------------------~~~~-----   51 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELA-----------ATI-GVDFKVK------------------TISV-----   51 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-----------CCC-SEEEEEE------------------EEEE-----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccc-----------cce-eecceeE------------------EEEE-----
Confidence            4689999999999999999999876543211           000 0000000                  0000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ......+.||||||+.+...   +..    .+ ...++++++|+|.....   .+... ..+...+.
T Consensus        52 -------------~~~~~~~~i~Dt~G~~~~~~---~~~----~~-~~~~~~ii~v~d~~~~~---s~~~~-~~~~~~i~  106 (177)
T d1x3sa1          52 -------------DGNKAKLAIWDTAGQERFRT---LTP----SY-YRGAQGVILVYDVTRRD---TFVKL-DNWLNELE  106 (177)
T ss_dssp             -------------TTEEEEEEEEEECSSGGGCC---SHH----HH-HTTCCEEEEEEETTCHH---HHHTH-HHHHHHHT
T ss_pred             -------------eccccEEEEEECCCchhhHH---HHH----HH-HhcCCEEEEEEECCCcc---ccccc-hhhhhhhc
Confidence                         01335789999999977521   111    11 14579999999976422   22211 22222222


Q ss_pred             ----hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHH
Q 014354          229 ----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (426)
Q Consensus       229 ----~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l  304 (426)
                          ....|++++.||.|.............+   .                      . ....+++.+||++|.||.++
T Consensus       107 ~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~---~----------------------~-~~~~~~~e~Sa~tg~gv~e~  160 (177)
T d1x3sa1         107 TYCTRNDIVNMLVGNKIDKENREVDRNEGLKF---A----------------------R-KHSMLFIEASAKTCDGVQCA  160 (177)
T ss_dssp             TCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH---H----------------------H-HTTCEEEECCTTTCTTHHHH
T ss_pred             ccccccceeeEEEeeccccccccccHHHHHHH---H----------------------H-HCCCEEEEEeCCCCCCHHHH
Confidence                3457889999999987643211111111   1                      0 12357999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 014354          305 FKAVEESAQEFMET  318 (426)
Q Consensus       305 ~~~l~~~~~~~~~~  318 (426)
                      |++|.+.+.+.+..
T Consensus       161 f~~l~~~l~~~p~l  174 (177)
T d1x3sa1         161 FEELVEKIIQTPGL  174 (177)
T ss_dssp             HHHHHHHHHTSGGG
T ss_pred             HHHHHHHHccCccc
Confidence            99999888765543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=139.30  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+.....       |.+... +..                        ...     .
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~-------~T~~~~-~~~------------------------~~~-----~   45 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYI-------PTVEDT-YRQ------------------------VIS-----C   45 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCC-------CCSCEE-EEE------------------------EEE-----E
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccC-------cceeec-ccc------------------------cee-----e
Confidence            579999999999999999999876432111       111000 000                        000     0


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.+|||+|...+..      .....+  ..++++++|.|....-+... .......+.... 
T Consensus        46 ------------~~~~~~l~~~d~~g~~~~~~------~~~~~~--~~a~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  104 (171)
T d2erxa1          46 ------------DKSICTLQITDTTGSHQFPA------MQRLSI--SKGHAFILVYSITSRQSLEE-LKPIYEQICEIKG  104 (171)
T ss_dssp             ------------TTEEEEEEEEECCSCSSCHH------HHHHHH--HHCSEEEEEEETTCHHHHHT-THHHHHHHHHHHC
T ss_pred             ------------ccccceeccccccccccccc------cccccc--cceeEEEEEeecccccchhc-ccchhhhhhhhhc
Confidence                        01235788999999987621      111112  23689999999865322111 001011111111 


Q ss_pred             -hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          229 -KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       229 -~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                       ..++|+|||.||+|+........  +..+.+.              +.         ..++++.+||++|.||+++|..
T Consensus       105 ~~~~~piilVgnK~Dl~~~~~v~~--~e~~~~~--------------~~---------~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1         105 DVESIPIMLVGNKCDESPSREVQS--SEAEALA--------------RT---------WKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             ---CCCEEEEEECGGGGGGCCSCH--HHHHHHH--------------HH---------HTCEEEECBTTTTBSHHHHHHH
T ss_pred             cCCCCcEEEEeecccccccccccH--HHHHHHH--------------HH---------cCCeEEEEcCCCCcCHHHHHHH
Confidence             35689999999999865432210  1111111              11         1257899999999999999998


Q ss_pred             HHHH
Q 014354          308 VEES  311 (426)
Q Consensus       308 l~~~  311 (426)
                      |.+.
T Consensus       160 l~~~  163 (171)
T d2erxa1         160 LLNL  163 (171)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.1e-16  Score=139.74  Aligned_cols=163  Identities=16%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||+++|++..+.....       |       +.........                +..     
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~-------~-------t~~~~~~~~~----------------~~~-----   48 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN-------P-------TIGASFMTKT----------------VQY-----   48 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCC-------C-------CCSEEEEEEE----------------EEE-----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccc-------c-------cccccccccc----------------ccc-----
Confidence            3679999999999999999999876543211       1       1100000000                000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ......+.+|||+|+.++...       ...+ ...++++|+|.|.....+-.. ............
T Consensus        49 -------------~~~~~~~~i~d~~g~~~~~~~-------~~~~-~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~  106 (167)
T d1z0ja1          49 -------------QNELHKFLIWDTAGLERFRAL-------APMY-YRGSAAAIIVYDITKEETFST-LKNWVRELRQHG  106 (167)
T ss_dssp             -------------TTEEEEEEEEEECCSGGGGGG-------THHH-HTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHS
T ss_pred             -------------cccccceeeeecCCchhhhHH-------HHHH-HhhccceEEEeeechhhhhhh-HHHhhhhhhhcc
Confidence                         012246789999999876211       1111 145789999999854221111 111111122233


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ....|++||+||+|+.......  ....+.+.                      .. .+.+++++||++|.||+++|..|
T Consensus       107 ~~~~~iilvgnK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1         107 PPSIVVAIAGNKCDLTDVREVM--ERDAKDYA----------------------DS-IHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             CTTSEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CCcceEEEecccchhccccchh--HHHHHHHH----------------------HH-cCCEEEEEecCCCCCHHHHHHHH
Confidence            5678999999999996543211  11111111                      11 23578999999999999999999


Q ss_pred             HHHHH
Q 014354          309 EESAQ  313 (426)
Q Consensus       309 ~~~~~  313 (426)
                      .+.+|
T Consensus       162 ~~~i~  166 (167)
T d1z0ja1         162 SRRIP  166 (167)
T ss_dssp             HHHCC
T ss_pred             HHhCC
Confidence            88754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=6.3e-16  Score=135.97  Aligned_cols=90  Identities=9%  Similarity=0.078  Sum_probs=61.4

Q ss_pred             CCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHH
Q 014354          197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (426)
Q Consensus       197 ~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  276 (426)
                      ....++++.++........     ...+..+.....|.++++||+|++...........+..                  
T Consensus        98 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~------------------  154 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD-----QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVRE------------------  154 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH-----HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHH------------------
T ss_pred             heeEEEEeecccccchhHH-----HHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHH------------------
Confidence            3456677777766554433     23344456678899999999999987654443333321                  


Q ss_pred             hhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHH
Q 014354          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (426)
Q Consensus       277 ~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~  312 (426)
                         .+..+....++|+|||++|+|+++|++.|...+
T Consensus       155 ---~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         155 ---AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             ---HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---HHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence               112344557899999999999999999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=136.41  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |.+       .......                 +..      
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~-------pTi-------~~~~~~~-----------------~~~------   45 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYD-------PTL-------ESTYRHQ-----------------ATI------   45 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-------TTC-------CEEEEEE-----------------EEE------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccC-------Cce-------ecccccc-----------------ccc------
Confidence            579999999999999999999876543211       111       0000000                 000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHH-HHHh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILY  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~-~~l~  228 (426)
                                  ......+.+|||+|...+.       .....+.  .++++++|.|.....+..... ...... ....
T Consensus        46 ------------~~~~~~l~i~D~~g~~~~~-------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~  103 (168)
T d2atva1          46 ------------DDEVVSMEILDTAGQEDTI-------QREGHMR--WGEGFVLVYDITDRGSFEEVL-PLKNILDEIKK  103 (168)
T ss_dssp             ------------TTEEEEEEEEECCCCCCCH-------HHHHHHH--HCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHT
T ss_pred             ------------cccceEEEEeecccccccc-------cchhhhc--ccccceeecccCCccchhhhh-hhccccccccc
Confidence                        0233678999999986641       1112222  368999999986543221111 111111 1122


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCC-HHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYFKA  307 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~g-v~~l~~~  307 (426)
                      ..+.|+++|.||+|+.....+.  .+....+              ++        .+ ..+++.+||++|.| |.++|..
T Consensus       104 ~~~~piilvgnK~Dl~~~r~V~--~~e~~~~--------------a~--------~~-~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1         104 PKNVTLILVGNKADLDHSRQVS--TEEGEKL--------------AT--------EL-ACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             TSCCCEEEEEECGGGGGGCCSC--HHHHHHH--------------HH--------HH-TSEEEECCTTTCTTCHHHHHHH
T ss_pred             ccCcceeeeccchhhhhhccCc--HHHHHHH--------------HH--------Hh-CCeEEEEccccCCcCHHHHHHH
Confidence            3578999999999986543210  0111111              11        11 35799999999996 9999998


Q ss_pred             HHHHHHH
Q 014354          308 VEESAQE  314 (426)
Q Consensus       308 l~~~~~~  314 (426)
                      |.+.+..
T Consensus       159 l~~~i~~  165 (168)
T d2atva1         159 LCREVRR  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-16  Score=139.22  Aligned_cols=163  Identities=15%  Similarity=0.163  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+|+|.+|||||||++++++..+.....              .+.......                 ....    
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~--------------~t~~~~~~~-----------------~~~~----   49 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--------------HTIGVEFLN-----------------KDLE----   49 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC------------------CCSEEEEE-----------------EEEE----
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccc--------------cceeeeeee-----------------eeee----
Confidence            34689999999999999999999876442211              011000000                 0000    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHH-HHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI  226 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~-~~~~  226 (426)
                       .            ......+.+|||+|..+..        .........+++++++.|.....+-.. ...... +...
T Consensus        50 -~------------~~~~~~~~i~d~~g~~~~~--------~~~~~~~~~~~~~i~~~d~~~~~s~~~-~~~~~~~i~~~  107 (174)
T d1wmsa_          50 -V------------DGHFVTMQIWDTAGQERFR--------SLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYY  107 (174)
T ss_dssp             -E------------TTEEEEEEEEECCCCGGGH--------HHHGGGGTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH
T ss_pred             -e------------cCceeeEeeecccCcceeh--------hhhhhhhhccceEEEEEeeecccccch-hhhHHHHHHHH
Confidence             0            0123678899999986641        111122245799999999864332211 111111 1111


Q ss_pred             Hh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      ..   ..++|+|||.||+|+.......   ++.+.+.                      .-+...+++++||++|.||.+
T Consensus       108 ~~~~~~~~~piilVgnK~Dl~~~~v~~---~~~~~~~----------------------~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_         108 ADVKEPESFPFVILGNKIDISERQVST---EEAQAWC----------------------RDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             HTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHH----------------------HHTTCCCEEECCTTTCTTHHH
T ss_pred             hccccCCCceEEEeccccchhhccCcH---HHHHHHH----------------------HHcCCCeEEEEcCCCCcCHHH
Confidence            11   2468999999999986532111   1111111                      112346799999999999999


Q ss_pred             HHHHHHHHH
Q 014354          304 YFKAVEESA  312 (426)
Q Consensus       304 l~~~l~~~~  312 (426)
                      +|+.|.+.+
T Consensus       163 ~f~~l~~~i  171 (174)
T d1wmsa_         163 AFEEAVRRV  171 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.3e-16  Score=135.36  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+.....       |......+..                       .....     
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~-------~~~~~~~~~~-----------------------~~~~~-----   48 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGAR-----------------------MVNID-----   48 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC------------CCSSEEEE-----------------------EEEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcc-------cceeecccee-----------------------eeeee-----
Confidence            579999999999999999999876543211       1110000000                       00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.+||++|+..+........        ..+|++++|+|.....+-.. +...+........
T Consensus        49 -------------~~~~~~~i~d~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~sf~~-~~~~~~~~~~~~~  106 (173)
T d2a5ja1          49 -------------GKQIKLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRETFNH-LTSWLEDARQHSS  106 (173)
T ss_dssp             -------------TEEEEEEEECCTTGGGTSCCCHHHH--------TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSC
T ss_pred             -------------eeEEEEEeecccCccchhhHHHHHh--------hccCEEEEEEeecChHHHHh-HHHHHHHHHHhCC
Confidence                         1236789999999977532111111        34799999999865322211 1111111122234


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .++|++||.||+|+.......  ......+.                      .. ...+++.+||++|.||.++|..|.
T Consensus       107 ~~~piilv~nK~D~~~~~~~~--~~~~~~~a----------------------~~-~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1         107 SNMVIMLIGNKSDLESRRDVK--REEGEAFA----------------------RE-HGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             TTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEecCCchhhhhhhH--HHHHHHHH----------------------HH-cCCEEEEecCCCCCCHHHHHHHHH
Confidence            578999999999976543211  11111111                      01 135799999999999999999998


Q ss_pred             HHHHH
Q 014354          310 ESAQE  314 (426)
Q Consensus       310 ~~~~~  314 (426)
                      +.+..
T Consensus       162 ~~i~~  166 (173)
T d2a5ja1         162 KEIYR  166 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            86543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.9e-16  Score=135.36  Aligned_cols=162  Identities=16%  Similarity=0.192  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||++++++..+......       ....     .+...                  .+...     
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~-------t~~~-----~~~~~------------------~i~~~-----   47 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-------TIGI-----DFKIK------------------TVDIN-----   47 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC--------------C-----CEEEE------------------EEESS-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCC-------ccce-----eEEEE------------------EEEEC-----
Confidence            5799999999999999999998765432111       0000     00000                  00000     


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                   .....+.||||||+..+.....  .    .+  ..++++++|+|.....+. ...............
T Consensus        48 -------------~~~~~~~i~Dt~G~~~~~~~~~--~----~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~  105 (166)
T d1g16a_          48 -------------GKKVKLQIWDTAGQERFRTITT--A----YY--RGAMGIILVYDITDERTF-TNIKQWFKTVNEHAN  105 (166)
T ss_dssp             -------------SCEEEEEEECCTTGGGTSCCCH--H----HH--TTEEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC
T ss_pred             -------------CEEEEEEEEECCCchhhHHHHH--H----HH--hcCCEEEEEEECCCccCH-HHHHhhhhhhhcccc
Confidence                         1235678999999977532111  1    11  346999999999763221 111111122222334


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|.+++.||.|+.......+....+.                         .. .+.+++++||++|.||.++|.+|.
T Consensus       106 ~~~~~i~~~~k~d~~~~~~~~~~~~~~~-------------------------~~-~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         106 DEAQLLLVGNKSDMETRVVTADQGEALA-------------------------KE-LGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             TTCEEEEEEECTTCTTCCSCHHHHHHHH-------------------------HH-HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CcceeeeecchhhhhhhhhhHHHHHHHH-------------------------Hh-cCCeEEEECCCCCCCHHHHHHHHH
Confidence            5678899999999876543222221111                         11 236899999999999999999998


Q ss_pred             HHHHH
Q 014354          310 ESAQE  314 (426)
Q Consensus       310 ~~~~~  314 (426)
                      +.+.+
T Consensus       160 ~~i~~  164 (166)
T d1g16a_         160 KLIQE  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.3e-16  Score=138.26  Aligned_cols=161  Identities=15%  Similarity=0.205  Sum_probs=95.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.++|+++|.+|||||||++++++..+.....       |.+.. .+...+.                       .    
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~-------~t~~~-~~~~~~~-----------------------~----   47 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYD-------PTIED-SYLKHTE-----------------------I----   47 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCC-------TTCCE-EEEEEEE-----------------------E----
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccC-------cceee-ccccccc-----------------------c----
Confidence            35789999999999999999999876442111       11100 0000000                       0    


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc--h-hhhhhHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--M-TFMSNMLYAC  224 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~--~-~~~~~~l~~~  224 (426)
                                    ......+.+|||+|+.......   .   ..+  ..++++++|.|.....+-  . .++.   .+.
T Consensus        48 --------------~~~~~~~~i~d~~g~~~~~~~~---~---~~~--~~~~~~llv~d~~d~~Sf~~~~~~~~---~i~  102 (169)
T d1x1ra1          48 --------------DNQWAILDVLDTAGQEEFSAMR---E---QYM--RTGDGFLIVYSVTDKASFEHVDRFHQ---LIL  102 (169)
T ss_dssp             --------------TTEEEEEEEEECCSCGGGCSSH---H---HHH--HHCSEEEEEEETTCHHHHHTHHHHHH---HHH
T ss_pred             --------------ccccccccccccccccccccch---h---hhh--hhccEEEEecccccchhhhccchhhH---HHH
Confidence                          0233678899999998763211   1   112  235899999998753221  1 1111   111


Q ss_pred             HHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHH
Q 014354          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEA  303 (426)
Q Consensus       225 ~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~  303 (426)
                      +......+|+|||.||+|+.....+.  .+....+.              +        .+ +.+++.+||++|. ||++
T Consensus       103 ~~~~~~~~p~ilvgnK~Dl~~~~~v~--~e~~~~~~--------------~--------~~-~~~~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1         103 RVKDRESFPMILVANKVDLMHLRKVT--RDQGKEMA--------------T--------KY-NIPYIETSAKDPPLNVDK  157 (169)
T ss_dssp             HHHTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHH--------------H--------HH-TCCEEEEBCSSSCBSHHH
T ss_pred             hhccccCccEEEEecccchhhhceee--hhhHHHHH--------------H--------Hc-CCEEEEEcCCCCCcCHHH
Confidence            22224578999999999988764321  01111111              1        11 2579999999986 9999


Q ss_pred             HHHHHHHHHH
Q 014354          304 YFKAVEESAQ  313 (426)
Q Consensus       304 l~~~l~~~~~  313 (426)
                      +|..|.+.+.
T Consensus       158 ~F~~l~~~i~  167 (169)
T d1x1ra1         158 TFHDLVRVIR  167 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=139.58  Aligned_cols=163  Identities=20%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|.+|||||||++++++..+....             .+.+........                .+..     
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~-----   51 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-------------FISTVGIDFRNK----------------VLDV-----   51 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCC-------------CCCCCSCEEEEE----------------EEEE-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccc-------------ccceeeeeeEEE----------------EEEe-----
Confidence            368999999999999999999887643211             010110000000                0000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                                   ....+.+.||||||+..+.       .+...+ ...+|++++|+|.....+... ............
T Consensus        52 -------------~~~~~~l~i~Dt~G~e~~~-------~~~~~~-~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~  109 (170)
T d2g6ba1          52 -------------DGVKVKLQMWDTAGQERFR-------SVTHAY-YRDAHALLLLYDVTNKASFDN-IQAWLTEIHEYA  109 (170)
T ss_dssp             -------------TTEEEEEEEEECCCC---------------CC-GGGCSEEEEEEETTCHHHHHT-HHHHHHHHHHHS
T ss_pred             -------------cCcEEEEEEEECCCchhhH-------HHHHHh-hcCCceeEEEecCCcccchhh-hhhhhhhhhhcc
Confidence                         0123578899999997652       111111 134799999999865332211 111111122223


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ....|.++|.||+|.........  +....+.                      ..+ .++++++||++|.||++++.+|
T Consensus       110 ~~~~~iilv~~k~d~~~~~~v~~--~~~~~~~----------------------~~~-~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1         110 QHDVALMLLGNKVDSAHERVVKR--EDGEKLA----------------------KEY-GLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             CTTCEEEEEEECCSTTSCCCSCH--HHHHHHH----------------------HHH-TCCEEECCTTTCTTHHHHHHHH
T ss_pred             CCCceEEEEEeeechhhcccccH--HHHHHHH----------------------HHc-CCEEEEEeCCCCcCHHHHHHHH
Confidence            45789999999999887532210  1111111                      111 3679999999999999999999


Q ss_pred             HHHH
Q 014354          309 EESA  312 (426)
Q Consensus       309 ~~~~  312 (426)
                      .+.+
T Consensus       165 ~~~i  168 (170)
T d2g6ba1         165 AKEL  168 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=141.34  Aligned_cols=173  Identities=17%  Similarity=0.157  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||++++++..+.....       |.+...       ....                  ..     
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~-------~t~~~~-------~~~~------------------~~-----   45 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYV-------PTVFDN-------YAVT------------------VM-----   45 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSEEE-------EEEE------------------EE-----
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcC-------Cceeee-------ccee------------------Ee-----
Confidence            3689999999999999999999876543211       111000       0000                  00     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-  227 (426)
                      .            ......+.||||+|+.++.......        -..++++++|.|..+..+   |..-...+...+ 
T Consensus        46 ~------------~~~~~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~S---f~~~~~~~~~~~~  102 (191)
T d2ngra_          46 I------------GGEPYTLGLFDTAGQEDYDRLRPLS--------YPQTDVFLVCFSVVSPSS---FENVKEKWVPEIT  102 (191)
T ss_dssp             E------------TTEEEEEEEEEECCSGGGTTTGGGG--------CTTCSEEEEEEETTCHHH---HHHHHHTHHHHHH
T ss_pred             e------------CCceeeeeccccccchhhhhhhhhc--------ccccceeecccccchHHH---HHHHHHHHHHHHh
Confidence            0            0233578999999998763211111        134799999999875432   211111111212 


Q ss_pred             -hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHH
Q 014354          228 -YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (426)
Q Consensus       228 -~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~  306 (426)
                       ...+.|+++|.||+|+.............         .   ...+....+..+..-+...+++.+||++|.||+++|+
T Consensus       103 ~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~---------~---~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~  170 (191)
T d2ngra_         103 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKN---------K---QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD  170 (191)
T ss_dssp             HHCTTCCEEEEEECGGGGGCHHHHHHHHTT---------T---CCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHH
T ss_pred             hcCCCCceEEEeccccccccchhhhhhhhc---------c---cccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHH
Confidence             23578999999999997654321111000         0   0001111111111223456799999999999999999


Q ss_pred             HHHHHHH
Q 014354          307 AVEESAQ  313 (426)
Q Consensus       307 ~l~~~~~  313 (426)
                      .+...+.
T Consensus       171 ~l~~~~~  177 (191)
T d2ngra_         171 EAILAAL  177 (191)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8876543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.6e-16  Score=136.44  Aligned_cols=162  Identities=15%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|||||||++++++..+.....       |.........      .                 +..      
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~-------~t~~~~~~~~------~-----------------~~~------   47 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHI-------TTLGASFLTK------K-----------------LNI------   47 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCC-------CCCSCEEEEE------E-----------------EES------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc-------cccccchhee------e-----------------ecc------
Confidence            689999999999999999999876543211       1110000000      0                 000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ......+.+|||+|..+...       +... .-..+|++++|.|.....+-... ...+........
T Consensus        48 ------------~~~~~~~~~~d~~g~~~~~~-------~~~~-~~~~~~~~i~v~d~~~~~Sf~~~-~~~~~~~~~~~~  106 (167)
T d1z08a1          48 ------------GGKRVNLAIWDTAGQERFHA-------LGPI-YYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLG  106 (167)
T ss_dssp             ------------SSCEEEEEEEECCCC--------------CC-SSTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHG
T ss_pred             ------------CCccceeeeeccCCcceecc-------cchh-hccCCceeEEEEeCCchhHHHhh-hhhhhhcccccc
Confidence                        01236788999999977521       1100 01347999999998653322111 111111222335


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      ...|++||.||+|+.....+.  .++...+.                      .. .+.+++.+||++|.||+++|..|.
T Consensus       107 ~~~~~ilvgnK~Dl~~~~~v~--~~e~~~~a----------------------~~-~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1         107 NEICLCIVGNKIDLEKERHVS--IQEAESYA----------------------ES-VGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             GGSEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HH-TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cccceeeeccccccccccccc--hHHHHHHH----------------------HH-cCCeEEEEecCCCcCHHHHHHHHH
Confidence            678899999999987653221  11111111                      11 135799999999999999999998


Q ss_pred             HHHH
Q 014354          310 ESAQ  313 (426)
Q Consensus       310 ~~~~  313 (426)
                      +.+.
T Consensus       162 ~~i~  165 (167)
T d1z08a1         162 KRMI  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.4e-16  Score=139.96  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      .++|+|+|.+|||||||+++|++..+....              +.+......                    ..++.  
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--------------~~t~~~~~~--------------------~~~~~--   49 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--------------ISTIGIDFK--------------------IRTIE--   49 (173)
T ss_dssp             EEEEEEECCCCC----------------CH--------------HHHHCEEEE--------------------EEEEE--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc--------------CccccceEE--------------------EEEEE--
Confidence            468999999999999999999986543211              001000000                    00000  


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                      .            ......+.||||||+..+......        .-..++++|+|+|++...+- .........+....
T Consensus        50 ~------------~~~~~~l~i~D~~G~e~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~  108 (173)
T d2fu5c1          50 L------------DGKRIKLQIWDTAGQERFRTITTA--------YYRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEHA  108 (173)
T ss_dssp             E------------TTEEEEEEEEEC---------CCT--------TTTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS
T ss_pred             E------------CCEEEEEEEEECCCchhhHHHHHH--------hccCCCEEEEEEECCChhhH-HHHHHHHHHhhhhc
Confidence            0            012357789999998775211111        01347999999998653321 11111112222233


Q ss_pred             hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       229 ~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ..+.|.++|.||.|+.........  ....+.                      . ....+++.+||++|.||.++|.+|
T Consensus       109 ~~~~~iilv~~k~D~~~~~~~~~~--~~~~~~----------------------~-~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1         109 SADVEKMILGNKCDVNDKRQVSKE--RGEKLA----------------------L-DYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             CTTCEEEEEEEC--CCSCCCSCHH--HHHHHH----------------------H-HHTCEEEECCC---CCHHHHHHHH
T ss_pred             cCCceEEEEEecccchhhcccHHH--HHHHHH----------------------H-hcCCEEEEEeCCCCCCHHHHHHHH
Confidence            567899999999999875322111  111000                      0 123679999999999999999999


Q ss_pred             HHHHHHH
Q 014354          309 EESAQEF  315 (426)
Q Consensus       309 ~~~~~~~  315 (426)
                      .+.+.+.
T Consensus       164 ~~~i~~k  170 (173)
T d2fu5c1         164 ARDIKAK  170 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9877654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.7e-16  Score=131.95  Aligned_cols=164  Identities=15%  Similarity=0.149  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      +|+|+|+||||||||+|+|++..++.            +......+ .                     ....       
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~------------~~~t~~~~-~---------------------~~~~-------   40 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT------------LQPTWHPT-S---------------------EELA-------   40 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC------------CCCCCSCE-E---------------------EEEC-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe------------eeceeeEe-E---------------------EEec-------
Confidence            68999999999999999999976542            11100010 0                     0000       


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhc
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~  230 (426)
                                  ..+..+.++|++|..........        ....++.+++++|........................
T Consensus        41 ------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  100 (166)
T d2qtvb1          41 ------------IGNIKFTTFDLGGHIQARRLWKD--------YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELK  100 (166)
T ss_dssp             ------------CTTCCEEEEECCCSGGGGGGGGG--------GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTT
T ss_pred             ------------cCCeeEEEEeeccchhhhhhHhh--------hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccC
Confidence                        23478899999998665211111        1133688999999875443322211111111222356


Q ss_pred             cCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHH
Q 014354          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (426)
Q Consensus       231 ~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~  310 (426)
                      +.|++++.||.|+.......++.+.+.. ... . .       ...+     ......+++++||++|+||++++++|.+
T Consensus       101 ~~~i~i~~~k~d~~~~~~~~~i~~~~~~-~~~-~-~-------~~~~-----~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         101 DVPFVILGNKIDAPNAVSEAELRSALGL-LNT-T-G-------SQRI-----EGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TCCEEEEEECTTSSSCCCHHHHHHHHTC-SSC-C-C----------C-----CSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CceEEEEeccccccccCCHHHHHHHhhh-hhh-h-H-------HHhh-----cccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            7899999999998764322223222110 000 0 0       0000     0012346999999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.5e-16  Score=135.69  Aligned_cols=161  Identities=14%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+++|.+|||||||+++|++..+.....       |       +........                .+..      
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~-------~-------t~~~~~~~~----------------~~~~------   50 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQE-------S-------TIGAAFLTQ----------------TVCL------   50 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCC-------C-------CSSEEEEEE----------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc-------c-------ccccccccc----------------eeec------
Confidence            579999999999999999999876543211       1       110000000                0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ......+.+|||||+.++..       +...+ -..++++++|+|.....+... .............
T Consensus        51 ------------~~~~~~~~~~d~~g~~~~~~-------~~~~~-~~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  109 (170)
T d1r2qa_          51 ------------DDTTVKFEIWDTAGQERYHS-------LAPMY-YRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS  109 (170)
T ss_dssp             ------------TTEEEEEEEEEECCSGGGGG-------GHHHH-HTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHSC
T ss_pred             ------------cceEEEEEeccCCCchhhhh-------hHHHH-hhCcceEEEEeccchhhHHHH-HHHHhhhhhhccC
Confidence                        01235789999999987521       11111 134789999999865332211 1111111111224


Q ss_pred             ccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                      .+.|++||.||+|+.......  .+....+                  +    .. ...+++.+||++|.||.++|..|.
T Consensus       110 ~~~~iilvgnK~Dl~~~~~v~--~e~~~~~------------------~----~~-~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_         110 PNIVIALSGNKADLANKRAVD--FQEAQSY------------------A----DD-NSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             TTCEEEEEEECGGGGGGCCSC--HHHHHHH------------------H----HH-TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEeeccccccccccccc--HHHHHHH------------------H----Hh-cCCEEEEeeCCCCCCHHHHHHHHH
Confidence            578999999999986543211  0111111                  1    11 235799999999999999999998


Q ss_pred             HHH
Q 014354          310 ESA  312 (426)
Q Consensus       310 ~~~  312 (426)
                      +.+
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9.9e-16  Score=135.91  Aligned_cols=112  Identities=20%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             CCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh----hccCCeEEEEecC
Q 014354          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT  241 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~----~~~~P~IlVlNKi  241 (426)
                      ..+.+|||||+.++       ..+...+ -..++++++|+|.....   .+.. ...+...+.    ....|++||.||+
T Consensus        64 ~~~~i~dt~G~e~~-------~~~~~~~-~~~~~~~i~v~d~~~~~---s~~~-~~~~~~~~~~~~~~~~~~iilv~nK~  131 (186)
T d2f7sa1          64 VHLQLWDTAGQERF-------RSLTTAF-FRDAMGFLLMFDLTSQQ---SFLN-VRNWMSQLQANAYCENPDIVLIGNKA  131 (186)
T ss_dssp             EEEEEEEEESHHHH-------HHHHHHH-HTTCCEEEEEEETTCHH---HHHH-HHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred             EEeccccCCcchhh-------HHHHHHH-HhcCCEEEEEEeccccc---ccee-eeeccchhhhhccCCCceEEEEeeec
Confidence            57889999999775       1222222 13479999999985422   2211 111111111    2346789999999


Q ss_pred             CCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                      |+.....+..  +....+.                      ..+ .++++++||++|.||.+++++|.+.+..
T Consensus       132 Dl~~~~~v~~--~e~~~~~----------------------~~~-~~~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         132 DLPDQREVNE--RQARELA----------------------DKY-GIPYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             TCGGGCCSCH--HHHHHHH----------------------HHT-TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             cchhhhcchH--HHHHHHH----------------------HHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9976532211  0111111                      112 3579999999999999999999886644

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=134.30  Aligned_cols=162  Identities=13%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      ++|+|+|.+|+|||||++++++......             ..+.++.++....                .+..      
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~----------------~~~~------   48 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMD-------------SDCEVLGEDTYER----------------TLMV------   48 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTC-------------CC---CCTTEEEE----------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCcc-------------ccccceeeeccee----------------eecc------
Confidence            6899999999999999999998654321             1111111110000                0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~-  228 (426)
                                  ......+.+||+||....      ...+... ....+|++|+|.|.+...+   +.. ...+...+. 
T Consensus        49 ------------~~~~~~~~~~d~~~~~g~------e~~~~~~-~~~~~~~~ilvfd~t~~~s---~~~-~~~~~~~i~~  105 (172)
T d2g3ya1          49 ------------DGESATIILLDMWENKGE------NEWLHDH-CMQVGDAYLIVYSITDRAS---FEK-ASELRIQLRR  105 (172)
T ss_dssp             ------------TTEEEEEEEECCTTTTHH------HHHHHHC-CCCCCSEEEEEEETTCHHH---HHH-HHHHHHHHHT
T ss_pred             ------------CCceeeeeeecccccccc------ccccccc-cccccceeeeeecccccch---hhh-hhhhhhhhhh
Confidence                        023356788887764221      0111111 1134799999999865322   111 111212222 


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ..++|+|||+||+|+.....+.  .+..+.+.                      ..+ ..+++.+||++|.||+++|
T Consensus       106 ~~~~~~~piilvgnK~Dl~~~~~v~--~~~~~~~a----------------------~~~-~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1         106 ARQTEDIPIILVGNKSDLVRCREVS--VSEGRACA----------------------VVF-DCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             SGGGTTSCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHH-TCEEEECBTTTTBSHHHHH
T ss_pred             ccccCCceEEEEecccccccccccc--HHHHHHHH----------------------HHc-CCeEEEEeCCCCcCHHHHH
Confidence               2478999999999987653221  01111111                      111 3579999999999999999


Q ss_pred             HHHHHHHHH
Q 014354          306 KAVEESAQE  314 (426)
Q Consensus       306 ~~l~~~~~~  314 (426)
                      ..|.+.+..
T Consensus       161 ~~l~~~i~~  169 (172)
T d2g3ya1         161 EGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.61  E-value=1.9e-15  Score=130.41  Aligned_cols=163  Identities=21%  Similarity=0.240  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +..+|+|+|.+|||||||+|+|++..+...              .+ +.                       +....   
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~--------------~~-~~-----------------------~~~~~---   42 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT--------------IP-TI-----------------------GFNVE---   42 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC--------------CC-CS-----------------------SEEEE---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce--------------ec-cc-----------------------ceeee---
Confidence            346899999999999999999998765321              01 00                       00000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                       ..           ..+...+.++|++|..........        .....+.+++++|.....................
T Consensus        43 -~~-----------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (169)
T d1upta_          43 -TV-----------TYKNLKFQVWDLGGLTSIRPYWRC--------YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE  102 (169)
T ss_dssp             -EE-----------EETTEEEEEEEECCCGGGGGGGGG--------GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG
T ss_pred             -ee-----------ccCceEEEEeeccccccccccchh--------hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh
Confidence             00           023467889999998665211111        1134688999999875554433222112112212


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      .....|+++|.||+|+.......++.....                     ... ......+++++||++|+||++++++
T Consensus       103 ~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~SA~~g~gv~e~~~~  160 (169)
T d1upta_         103 ELRKAILVVFANKQDMEQAMTSSEMANSLG---------------------LPA-LKDRKWQIFKTSATKGTGLDEAMEW  160 (169)
T ss_dssp             GGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GGG-CTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ccccceEEEEEeeccccccccHHHHHHHHH---------------------HHH-HhcCCCEEEEEeCCCCCCHHHHHHH
Confidence            345688999999999987643333322211                     000 0123468999999999999999999


Q ss_pred             HHHHHH
Q 014354          308 VEESAQ  313 (426)
Q Consensus       308 l~~~~~  313 (426)
                      |.+.+.
T Consensus       161 l~~~l~  166 (169)
T d1upta_         161 LVETLK  166 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=6e-16  Score=137.02  Aligned_cols=171  Identities=15%  Similarity=0.155  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|.+|||||||+++++...+.....       |.+....... +                      ...      
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~-------~t~~~~~~~~-~----------------------~~~------   46 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYV-------PTVFENYTAS-F----------------------EID------   46 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCC-------CCSEEEEEEE-E----------------------ECS------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccC-------Cceeeccccc-c----------------------ccc------
Confidence            468999999999999999999887653221       1110000000 0                      000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH--
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL--  227 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l--  227 (426)
                                   ...+.+.+|||+|+..+......        --..++++++|.|..+..+   |......+...+  
T Consensus        47 -------------~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~S---f~~~~~~~~~~~~~  102 (179)
T d1m7ba_          47 -------------TQRIELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPET---LDSVLKKWKGEIQE  102 (179)
T ss_dssp             -------------SCEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHH---HHHHHHTHHHHHHH
T ss_pred             -------------ceEEeeccccccccccccccccc--------hhhhhhhhheeeecccCCC---HHHHHHHHHHHHhc
Confidence                         13367889999998775321110        1134799999999865432   221111111212  


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCC-CHHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAYFK  306 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~-gv~~l~~  306 (426)
                      ...+.|+|||.||+|+........-....         .   ...+....+..+....+..+++.+||++|. |++++|+
T Consensus       103 ~~~~~~iilVgnK~Dl~~~~~~~~~~~~~---------~---~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~  170 (179)
T d1m7ba_         103 FCPNTKMLLVGCKSDLRTDVSTLVELSNH---------R---QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH  170 (179)
T ss_dssp             HCTTCEEEEEEECGGGGGCHHHHHHHHTT---------T---CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHH
T ss_pred             cCCcceEEEEEecccccccchhhHHHhhh---------h---cCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHH
Confidence            23578999999999987643211000000         0   000111111112222344679999999998 6999999


Q ss_pred             HHHHHH
Q 014354          307 AVEESA  312 (426)
Q Consensus       307 ~l~~~~  312 (426)
                      .+...+
T Consensus       171 ~~~~~~  176 (179)
T d1m7ba_         171 VATLAC  176 (179)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.2e-14  Score=134.63  Aligned_cols=184  Identities=14%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ...|+++|+.++|||||+.+|+........+.. .......... ....++........+.-++.|+....+..+-    
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~-~~~~~~~~~~-~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~----   79 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI-EKFEKEAAEL-GKGSFKYAWVLDKLKAERERGITIDIALWKF----   79 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHH-HHHHHHGGGG-SSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE----
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHH-HHHHHHHHHh-cCCccceeeecccchhhhcceeccccceeEe----
Confidence            468999999999999999999865321100000 0000000000 0000000000111122334555544332221    


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCC-------CchhhhhhH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-------NPMTFMSNM  220 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~-------~~~~~~~~~  220 (426)
                      .             ..++++.|+|||||.++         +..+.+. ..+|.+|+|||+..+.       .+++     
T Consensus        80 ~-------------~~~~~i~iiDtPGH~df---------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT-----  132 (239)
T d1f60a3          80 E-------------TPKYQVTVIDAPGHRDF---------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-----  132 (239)
T ss_dssp             E-------------CSSEEEEEEECCCCTTH---------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-----
T ss_pred             c-------------cCCEEEEEEECCCcHHH---------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhH-----
Confidence            1             35578999999999885         2233333 4589999999998763       2343     


Q ss_pred             HHHHHHHhhccCC-eEEEEecCCCCChH--hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc
Q 014354          221 LYACSILYKTRLP-LVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (426)
Q Consensus       221 l~~~~~l~~~~~P-~IlVlNKiDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~  297 (426)
                      ...+.++...++| +|+++||+|++...  ....+...+..+....              +    -....++++++||..
T Consensus       133 ~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~--------------~----~~~~~i~~ipiSa~~  194 (239)
T d1f60a3         133 REHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV--------------G----YNPKTVPFVPISGWN  194 (239)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH--------------T----CCGGGCCEEECCTTT
T ss_pred             HHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhc--------------C----CCCCcEEEEEEEccC
Confidence            3445556677887 56789999998643  2223333333332211              0    001236789999999


Q ss_pred             CCCHHH
Q 014354          298 GAGIEA  303 (426)
Q Consensus       298 g~gv~~  303 (426)
                      |.|+.+
T Consensus       195 G~ni~~  200 (239)
T d1f60a3         195 GDNMIE  200 (239)
T ss_dssp             CBTTTB
T ss_pred             CCccee
Confidence            998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.7e-15  Score=133.96  Aligned_cols=119  Identities=20%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      -|+|+|+|+||||||||+|+|++.....           .++....                        .+.+.     
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~-----------~tt~~~~------------------------~~~~~-----   42 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP-----------TVVSQEP------------------------LSAAD-----   42 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC-----------BCCCSSC------------------------EEETT-----
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC-----------eEEecce------------------------EEEEE-----
Confidence            3689999999999999999999876331           1111000                        01111     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHH--hcCCcEEEEEEeCCCCCCchh----hhhhHHH
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMT----FMSNMLY  222 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~--~~~~d~vl~VVDa~~~~~~~~----~~~~~l~  222 (426)
                                    ..+..+.+|||||+....  .    .....+.  ...++.+++++|+........    ++...+.
T Consensus        43 --------------~~~~~~~l~D~~g~~~~~--~----~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~  102 (209)
T d1nrjb_          43 --------------YDGSGVTLVDFPGHVKLR--Y----KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS  102 (209)
T ss_dssp             --------------GGGSSCEEEECCCCGGGT--H----HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH
T ss_pred             --------------eCCeEEEEEecccccchh--h----HHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHH
Confidence                          244788999999987642  1    2222221  234688999999876554422    2222233


Q ss_pred             HHHHHhhccCCeEEEEecCCCCChH
Q 014354          223 ACSILYKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       223 ~~~~l~~~~~P~IlVlNKiDl~~~~  247 (426)
                      .+......++|+++|+||+|+....
T Consensus       103 ~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_         103 ITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHHHHhccCCeEEEEEeecccccC
Confidence            3444456789999999999998653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.58  E-value=1.5e-15  Score=141.31  Aligned_cols=119  Identities=17%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHH-hcCCcEEEEEEeCCCCCCchhh--hhhHHHHHHHHhhccCC-eEEEEe
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTF--MSNMLYACSILYKTRLP-LVLAFN  239 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~-~~~~d~vl~VVDa~~~~~~~~~--~~~~l~~~~~l~~~~~P-~IlVlN  239 (426)
                      ....+.|+||||+.++.         ..+.+ ...+|.+++|||+..|..++.+  ...-...+.++...++| +|+++|
T Consensus       100 ~~~~i~~iDtPGH~df~---------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN  170 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYV---------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  170 (245)
T ss_dssp             SSEEEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             ccceeeeecccccccch---------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence            44689999999998862         12222 2568999999999987533211  00113444556667777 568899


Q ss_pred             cCCCCChH----hHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHH
Q 014354          240 KTDVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (426)
Q Consensus       240 KiDl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~  307 (426)
                      |+|++...    ...++...+..+...+.             +.   .....+++||+||++|+||.++++.
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~-------------~~---~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVA-------------GY---NSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHH-------------CC---CHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHh-------------Cc---CcccCCEEEEeeccCCCCcccchhc
Confidence            99997532    12223333322211100             00   0112367999999999999876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=2.2e-15  Score=138.38  Aligned_cols=113  Identities=16%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHh-cCCcEEEEEEeCCCCCCchhh--hhhHHHHHHHHhhccC-CeEEEEe
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTF--MSNMLYACSILYKTRL-PLVLAFN  239 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~-~~~d~vl~VVDa~~~~~~~~~--~~~~l~~~~~l~~~~~-P~IlVlN  239 (426)
                      +++.+.|||||||.++.         .++.+. ..+|.+|+|||+..|...+++  +......+.++...++ +.|+++|
T Consensus        79 ~~~~i~iiDtPGH~df~---------~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iN  149 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFV---------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN  149 (224)
T ss_dssp             SSCEEEECCCSSSTTHH---------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             CCceeEEeeCCCcHHHH---------HHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEE
Confidence            56789999999998862         223332 458999999999998644321  1111233444444555 4778899


Q ss_pred             cCCCCChHhH----HHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          240 KTDVAQHEFA----LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       240 KiDl~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      |+|+..+...    ......+..+...                  +......++++|+||..|.|+.+
T Consensus       150 K~D~~~~~~~~~~~~~v~~~i~~~~~~------------------~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         150 KMDLTEPPYDEKRYKEIVDQVSKFMRS------------------YGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CGGGSSSTTCHHHHHHHHHHHHHHHHH------------------TTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccCCCccccHHHHHHHHHHHHhHHHh------------------cCCCcccCeEEEEEccCCCCccc
Confidence            9999864321    1122222222111                  01112346789999999999853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=8.1e-15  Score=145.86  Aligned_cols=175  Identities=12%  Similarity=0.027  Sum_probs=100.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      .+..|+|+|.||||||||+|+|+|......+.        +......+|    ++..                 ++.   
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~--------~~~g~~~tT----~~~~-----------------~~~---  102 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGA--------AKTGVVEVT----MERH-----------------PYK---  102 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTS--------CCCCC--------CCCE-----------------EEE---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcc--------CCCCCCCCc----eeee-----------------eee---
Confidence            45789999999999999999999965332110        111111122    1100                 000   


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l  227 (426)
                                    ......++||||||+....  . .............+|++++++|..  +...+     ..++..+
T Consensus       103 --------------~~~~~~~~l~DtPG~~~~~--~-~~~~~~~~~~~~~~d~~l~~~~~~--~~~~d-----~~l~~~l  158 (400)
T d1tq4a_         103 --------------HPNIPNVVFWDLPGIGSTN--F-PPDTYLEKMKFYEYDFFIIISATR--FKKND-----IDIAKAI  158 (400)
T ss_dssp             --------------CSSCTTEEEEECCCGGGSS--C-CHHHHHHHTTGGGCSEEEEEESSC--CCHHH-----HHHHHHH
T ss_pred             --------------ccCCCeEEEEeCCCccccc--c-cHHHHHHHhhhhcceEEEEecCCC--CCHHH-----HHHHHHH
Confidence                          0234679999999997652  1 112222333334578888887753  33333     4455667


Q ss_pred             hhccCCeEEEEecCCCCChHh---------HHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhh-hhcCCceEEeeccc
Q 014354          228 YKTRLPLVLAFNKTDVAQHEF---------ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVS  297 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~vv~vSA~~  297 (426)
                      ...++|+++|+||+|......         ..+..+.++                 +.....+.. .....+++.+|...
T Consensus       159 ~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir-----------------~~~~~~l~~~~~~~~~vflvS~~~  221 (400)
T d1tq4a_         159 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR-----------------LNCVNTFRENGIAEPPIFLLSNKN  221 (400)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH-----------------HHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             HHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHH-----------------HHHHHHHHHcCCCCCCEEEecCCc
Confidence            788999999999999653211         011111111                 000111111 13445788898754


Q ss_pred             --CCCHHHHHHHHHHHHHHH
Q 014354          298 --GAGIEAYFKAVEESAQEF  315 (426)
Q Consensus       298 --g~gv~~l~~~l~~~~~~~  315 (426)
                        ..|+..|.+.+.+.+|+.
T Consensus       222 ~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         222 VCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TTSTTHHHHHHHHHHHSCGG
T ss_pred             ccccCHHHHHHHHHHHhHHH
Confidence              558999999998887764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=9.8e-15  Score=127.44  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+|+|.+|||||||++++++..+....              +.+........                -+..      
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~--------------~~t~~~~~~~~----------------~i~~------   47 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK--------------EPTIGAAFLTQ----------------RVTI------   47 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEEE----------------EEEE------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc--------------cccccceeecc----------------cccc------
Confidence            57999999999999999999988754321              11111000000                0000      


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhh
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~  229 (426)
                                  ......+.+|||+|+.+...   +    ... ....++++++|+|.....+... .............
T Consensus        48 ------------~~~~~~l~i~d~~g~~~~~~---~----~~~-~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~  106 (170)
T d1ek0a_          48 ------------NEHTVKFEIWDTAGQERFAS---L----APM-YYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQAS  106 (170)
T ss_dssp             ------------TTEEEEEEEEEECCSGGGGG---G----HHH-HHTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHSC
T ss_pred             ------------ccccccccccccCCchhHHH---H----HHH-HHhccceEEEEEeCCcccchhh-hhhhhhhhccccc
Confidence                        02336889999999977521   1    111 1145799999999975322211 1111111112234


Q ss_pred             ccCCeEEEEecCCCCChHhHHHH-HHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHHHHH
Q 014354          230 TRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (426)
Q Consensus       230 ~~~P~IlVlNKiDl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l  308 (426)
                      ...|.++|.||+|+........+ ......+.                      .. ...+++.+||++|.||+++|..|
T Consensus       107 ~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~----------------------~~-~~~~~~e~Sak~g~gV~e~F~~i  163 (170)
T d1ek0a_         107 KDIIIALVGNKIDMLQEGGERKVAREEGEKLA----------------------EE-KGLLFFETSAKTGENVNDVFLGI  163 (170)
T ss_dssp             TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----------------------HH-HTCEEEECCTTTCTTHHHHHHHH
T ss_pred             cccceeeeecccccccccchhhhhHHHHHHHH----------------------HH-cCCEEEEecCCCCcCHHHHHHHH
Confidence            56899999999997543110000 00111110                      11 13579999999999999999998


Q ss_pred             HHHH
Q 014354          309 EESA  312 (426)
Q Consensus       309 ~~~~  312 (426)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T d1ek0a_         164 GEKI  167 (170)
T ss_dssp             HTTS
T ss_pred             HHHh
Confidence            7654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.55  E-value=4.6e-15  Score=129.91  Aligned_cols=171  Identities=14%  Similarity=0.159  Sum_probs=90.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      ++..+|+|+|.+|||||||+++|++..+....        |..    ..+ .                    ..+.    
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~--------~~~----~~~-~--------------------~~~~----   53 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--------PTL----HPT-S--------------------EELT----   53 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCC----CCS-C--------------------EEEE----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee--------ccc----ccc-e--------------------eEEE----
Confidence            46688999999999999999999987643210        000    000 0                    0000    


Q ss_pred             cccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHH
Q 014354          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~  226 (426)
                                      ..+..+.++|++|+.........        .....+.+++++|.........   ........
T Consensus        54 ----------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~d~~~~~~---~~~~~~~~  106 (186)
T d1f6ba_          54 ----------------IAGMTFTTFDLGGHIQARRVWKN--------YLPAINGIVFLVDCADHERLLE---SKEELDSL  106 (186)
T ss_dssp             ----------------ETTEEEEEEEECC----CCGGGG--------GGGGCSEEEEEEETTCGGGHHH---HHHHHHHH
T ss_pred             ----------------ecccccccccccchhhhhhHHhh--------hhcccceeeeeeeccCccchHH---HHHHHHHh
Confidence                            12356788999998775321111        1133678999999764332211   11111111


Q ss_pred             H---hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHH
Q 014354          227 L---YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (426)
Q Consensus       227 l---~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~  303 (426)
                      .   ...++|.+|+.||.|+........+.+.+.    .......      ............+.+++++||++|+|+.+
T Consensus       107 ~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e  176 (186)
T d1f6ba_         107 MTDETIANVPILILGNKIDRPEAISEERLREMFG----LYGQTTG------KGSVSLKELNARPLEVFMCSVLKRQGYGE  176 (186)
T ss_dssp             HTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT----CTTTCCC------SSCCCTTTCCSCCEEEEECBTTTTBSHHH
T ss_pred             hcccccCCCceEEEEeccCccccCCHHHHHHHHh----hcccchh------hhhhhHHHhhcCCCEEEEEeCCCCCCHHH
Confidence            1   235799999999999876433222322221    0000000      00000000011235799999999999999


Q ss_pred             HHHHHHHH
Q 014354          304 YFKAVEES  311 (426)
Q Consensus       304 l~~~l~~~  311 (426)
                      ++++|.+.
T Consensus       177 ~~~~l~~~  184 (186)
T d1f6ba_         177 GFRWMAQY  184 (186)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3.8e-15  Score=129.26  Aligned_cols=156  Identities=20%  Similarity=0.219  Sum_probs=89.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+|+|.+|||||||++++++..+.....              .+......                    ...   +
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~--------------~~~~~~~~--------------------~~~---~   44 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--------------ATIGVDFR--------------------ERA---V   44 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--------------CCCSCCEE--------------------EEE---E
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccC--------------cccccccc--------------------eee---e
Confidence            4689999999999999999999876543211              01100000                    000   0


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHH-
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l-  227 (426)
                      .-           ......+.+||++|......  .    ....+ -..+|++++|+|.....   .|.. ...+...+ 
T Consensus        45 ~~-----------~~~~~~~~~~~~~~~~~~~~--~----~~~~~-~~~~d~~ilv~d~~~~~---s~~~-~~~~~~~i~  102 (165)
T d1z06a1          45 DI-----------DGERIKIQLWDTAGQERFRK--S----MVQHY-YRNVHAVVFVYDMTNMA---SFHS-LPAWIEECK  102 (165)
T ss_dssp             EE-----------TTEEEEEEEEECCCSHHHHT--T----THHHH-HTTCCEEEEEEETTCHH---HHHT-HHHHHHHHH
T ss_pred             ee-----------eccceEEEEEeccCchhhcc--c----cceee-ecCCCceEEEEEeehhh---hhhh-hhhhhHHHH
Confidence            00           02336788999999865421  1    11111 13579999999986532   2221 11111112 


Q ss_pred             ---hhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeeccc---CCCH
Q 014354          228 ---YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGI  301 (426)
Q Consensus       228 ---~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~---g~gv  301 (426)
                         ...++|++||+||+|+.......  .+....+..                      .+ +.+++.+||++   |.||
T Consensus       103 ~~~~~~~~pi~lvgnK~Dl~~~~~v~--~~~~~~~~~----------------------~~-~~~~~e~SAkt~~~~~~V  157 (165)
T d1z06a1         103 QHLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFAD----------------------TH-SMPLFETSAKNPNDNDHV  157 (165)
T ss_dssp             HHCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH----------------------HT-TCCEEECCSSSGGGGSCH
T ss_pred             hhccCCCCeEEEEeccccchhccchh--HHHHHHHHH----------------------HC-CCEEEEEecccCCcCcCH
Confidence               23478999999999987653211  111111111                      11 35799999987   5599


Q ss_pred             HHHHHHH
Q 014354          302 EAYFKAV  308 (426)
Q Consensus       302 ~~l~~~l  308 (426)
                      .++|.+|
T Consensus       158 ~e~F~~l  164 (165)
T d1z06a1         158 EAIFMTL  164 (165)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=128.30  Aligned_cols=161  Identities=14%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      ..+|+++|.+|||||||++++++..+....        +       +........                 +..     
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~--------~-------t~~~~~~~~-----------------i~v-----   47 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE--------K-------TESEQYKKE-----------------MLV-----   47 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCC--------C-------SSCEEEEEE-----------------EEE-----
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcC--------C-------ccceeEEEE-----------------eec-----
Confidence            478999999999999999999988754211        0       100000000                 000     


Q ss_pred             cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHh
Q 014354          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (426)
Q Consensus       149 s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~  228 (426)
                       +            ...+.+.||||+|+....           .++  .+|++|+|.|.....+-.. .......+..+.
T Consensus        48 -~------------~~~~~l~i~Dt~g~~~~~-----------~~~--~ad~~ilVfd~~~~~Sf~~-~~~~~~~i~~~~  100 (175)
T d2bmja1          48 -D------------GQTHLVLIREEAGAPDAK-----------FSG--WADAVIFVFSLEDENSFQA-VSRLHGQLSSLR  100 (175)
T ss_dssp             -T------------TEEEEEEEEECSSCCCHH-----------HHH--HCSEEEEEEETTCHHHHHH-HHHHHHHHHHHC
T ss_pred             -C------------ceEEEEEEeecccccccc-----------ccc--ccceeEEEeecccchhhhh-hHHHHHHHHHHh
Confidence             0            233678899999987641           121  2589999999865322111 111111111122


Q ss_pred             ---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHHHhhhhHhhhhcCCceEEeecccCCCHHHHH
Q 014354          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (426)
Q Consensus       229 ---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~  305 (426)
                         ...+|++||+||.|+.......-.....+.+..                     . ....+++++||++|.||+++|
T Consensus       101 ~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~---------------------~-~~~~~~~e~SAk~~~~v~~~F  158 (175)
T d2bmja1         101 GEGRGGLALALVGTQDRISASSPRVVGDARARALCA---------------------D-MKRCSYYETCATYGLNVDRVF  158 (175)
T ss_dssp             C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH---------------------T-STTEEEEEEBTTTTBTHHHHH
T ss_pred             hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH---------------------H-hCCCeEEEeCCCCCcCHHHHH
Confidence               345789999999997543211000011111100                     1 123578999999999999999


Q ss_pred             HHHHHHHHHH
Q 014354          306 KAVEESAQEF  315 (426)
Q Consensus       306 ~~l~~~~~~~  315 (426)
                      ..+.+.+...
T Consensus       159 ~~l~~~i~~~  168 (175)
T d2bmja1         159 QEVAQKVVTL  168 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9888776554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.1e-14  Score=129.33  Aligned_cols=126  Identities=21%  Similarity=0.272  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~  150 (426)
                      .|+|+|++|||||||+|+|++..+....        |.     .+++..                     .+..    . 
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~--------~t-----~~~~~~---------------------~~~~----~-   42 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ--------TS-----ITDSSA---------------------IYKV----N-   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC--------CC-----CSCEEE---------------------EEEC----S-
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc--------CC-----eeEEEE---------------------EEEE----e-
Confidence            5999999999999999999987644210        00     011110                     0000    0 


Q ss_pred             cHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHH-HHHHH--H
Q 014354          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSI--L  227 (426)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l-~~~~~--l  227 (426)
                                 ......+.+||+||+..+.      ......+ ...++.+++|+|+........-....+ ..+..  .
T Consensus        43 -----------~~~~~~~~~~d~~g~~~~~------~~~~~~~-~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~  104 (207)
T d2fh5b1          43 -----------NNRGNSLTLIDLPGHESLR------FQLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA  104 (207)
T ss_dssp             -----------STTCCEEEEEECCCCHHHH------HHHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------eeeeeeeeeeecccccccc------chhhhhh-hhhccccceEEEcccccccHHHHHHHHHHHHHhHHH
Confidence                       0234678999999986531      1122211 134689999999975332111000001 11111  1


Q ss_pred             hhccCCeEEEEecCCCCChHhHHHHH
Q 014354          228 YKTRLPLVLAFNKTDVAQHEFALEWM  253 (426)
Q Consensus       228 ~~~~~P~IlVlNKiDl~~~~~~~~~~  253 (426)
                      ....+|++||+||+|+........+.
T Consensus       105 ~~~~~pilvv~NK~Dl~~a~~~~~i~  130 (207)
T d2fh5b1         105 LKNSPSLLIACNKQDIAMAKSAKLIQ  130 (207)
T ss_dssp             STTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred             hhcCCcEEEEEECcccCCCCCHHHHH
Confidence            23457999999999998644333333

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.2e-14  Score=128.86  Aligned_cols=153  Identities=19%  Similarity=0.234  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      +.|+++|.|+.||||||||++|+...  .+.+++|+.++.+-..+.... +....        .......+||+||+.. 
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~--~~~riaVI~Ne~g~~~iD~~~-~~~~~--------~~~~el~~gcicc~~~-   69 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQL-IGDRA--------TQIKTLTNGCICCSRS-   69 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEE-ECTTS--------CEEEEETTSCEEECTT-
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcC--CCCcEEEEEecccchhhhhhh-hcccc--------cceEEecCCcceeccc-
Confidence            45899999999999999999999863  466788777664322111100 00000        0011124799999743 


Q ss_pred             ccccHHHHHHHHH---HHhcCCCEEEEcCCCcccccchhchHHHHHHHH-------HhcCCcEEEEEEeCCCCCCchhhh
Q 014354          148 FTTKFDEVISLIE---RRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-------ASTFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       148 ls~~~~~~~~~~~---~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~-------~~~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                       .........++.   .....++++||+|.|..++.       .+...+       .....+.+++|||+.++.....  
T Consensus        70 -~~~~~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~-------~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~--  139 (222)
T d1nija1          70 -NELEDALLDLLDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN--  139 (222)
T ss_dssp             -SCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH--
T ss_pred             -hhHHHHHHHHHHHHhhccCCcceeEEeecccchhh-------HHHHHHHhhhcccccccccchhhhhhhhhhhhhhh--
Confidence             223333333332   22346899999999998862       222222       1123578999999976532211  


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                       .   .--...|.....+||+||+|+...
T Consensus       140 -~---~~~~~~Qi~~AD~ivlNK~Dl~~~  164 (222)
T d1nija1         140 -Q---FTIAQSQVGYADRILLTKTDVAGE  164 (222)
T ss_dssp             -H---CHHHHHHHHTCSEEEEECTTTCSC
T ss_pred             -h---hHHHHHHHHhCCcccccccccccH
Confidence             1   011234677899999999999874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=1.6e-14  Score=140.19  Aligned_cols=68  Identities=25%  Similarity=0.254  Sum_probs=53.5

Q ss_pred             CCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCC
Q 014354          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       165 ~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~  244 (426)
                      .+.+.||||||+.++.      ..+...+  ..+|.+|+|||+..|+..++     ..+++.+...++|.|+|+||+|+.
T Consensus        95 ~~~inliDtPGh~dF~------~ev~~al--~~~D~allVVda~eGv~~qT-----~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFS------SEVTAAL--RVTDGALVVVDTIEGVCVQT-----ETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSC------HHHHHHH--HTCSEEEEEEETTTBSCHHH-----HHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHH------HHHHHHH--hhcCceEEEEecccCcchhH-----HHHHHHHHHcCCCeEEEEECcccc
Confidence            3568899999999973      2222233  34799999999999999887     456677778899999999999975


Q ss_pred             C
Q 014354          245 Q  245 (426)
Q Consensus       245 ~  245 (426)
                      .
T Consensus       162 ~  162 (341)
T d1n0ua2         162 L  162 (341)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.37  E-value=2e-12  Score=120.67  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ....|+|+|.+|||||||+|.|+|.....            ++..+.+|    ++                 +...... 
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~------------vs~~~~~T----~~-----------------~~~~~~~-   76 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEG----PR-----------------PVMVSRS-   76 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----SS-----------------CEEEEEE-
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCcee------------ecCCCCcc----ee-----------------EEEEEEE-
Confidence            45789999999999999999999987553            34444444    11                 1111100 


Q ss_pred             ccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchH-HHHHHHHHhcCCcEEEEEEeCCCC-CCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~-~~l~~~~~~~~~d~vl~VVDa~~~-~~~~~~~~~~l~~~~  225 (426)
                                     ..+.++.||||||+.+........ ..+.........++++||++.... ++..+.. ....+..
T Consensus        77 ---------------~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~-~l~~l~~  140 (257)
T d1h65a_          77 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL-VAKAITD  140 (257)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHH-HHHHHHH
T ss_pred             ---------------eccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHH-HHHHHHH
Confidence                           245689999999997753221111 112222222346788888887543 3333211 1111111


Q ss_pred             HH-hhccCCeEEEEecCCCCChH
Q 014354          226 IL-YKTRLPLVLAFNKTDVAQHE  247 (426)
Q Consensus       226 ~l-~~~~~P~IlVlNKiDl~~~~  247 (426)
                      .+ ...-.++|+|+||+|...+.
T Consensus       141 ~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         141 SFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HcchhhhhCEEEEEECcccCCcC
Confidence            11 12345789999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.9e-12  Score=118.95  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=87.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chhh----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIRD----  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r~----  122 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..        +..+++..++    .+.+    
T Consensus        22 l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~  101 (239)
T d1v43a3          22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAF  101 (239)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHT
T ss_pred             EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHH
Confidence            56677778899999999999999999999999999998888887665521        1112222111    0111    


Q ss_pred             ------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354          123 ------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI  179 (426)
Q Consensus       123 ------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~  179 (426)
                                  ..++.++++.+++.+......  ..||+|++|++.+|+++..+++++|+|.| +-.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~  169 (239)
T d1v43a3         102 PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA  169 (239)
T ss_dssp             TCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHhhhccCCCceeecCCcccCCH
Confidence                        124567899999876544333  36999999999999999999999999999 34444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=5.6e-12  Score=121.01  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=43.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCC----------
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG----------  140 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~----------  140 (426)
                      .|+|+|.||||||||+|+|++....             +.++||||                  +.||-|          
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~-------------v~nypftT------------------~~pn~Gv~~~~~~~~~   50 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVE-------------IANYPFTT------------------IEANVGVTYAITDHPC   50 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC---------------------------------------------CCEEEEEEEEECSC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCc-------------hhcCCCCc------------------ccCccceeeCCCCchh
Confidence            5999999999999999999998632             67778777                  222222          


Q ss_pred             -----cccccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh--cCCcEEEEEEeCCCC
Q 014354          141 -----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRS  210 (426)
Q Consensus       141 -----i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~--~~~d~vl~VVDa~~~  210 (426)
                           ++..... ....         ......+.|+|+||+....   ..+..+...+-.  ..+|++++|||++..
T Consensus        51 ~~~~~~~~~~~~-~~~~---------~~~~~~i~~~D~pGli~ga---~~g~~~~~~~l~~i~~~d~ii~VVd~~~~  114 (319)
T d1wxqa1          51 KELGCSPNPQNY-EYRN---------GLALIPVKMVDVAGLVPGA---HEGRGLGNKFLDDLRMASALIHVVDATGK  114 (319)
T ss_dssp             SSSCCSCCCSSS-CEET---------TEEEEEEEEEECC------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             hhhhhccCcccc-cccc---------ccccccEEEEECCCcccch---hcccchHHHHHHhhccceEEEEEeccccc
Confidence                 2221000 0000         0112468999999997752   122333333322  458999999999743

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.6e-12  Score=116.63  Aligned_cols=114  Identities=11%  Similarity=0.066  Sum_probs=68.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------ccccccccc----------cc-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----------ID-  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~----------i~-  119 (426)
                      ..+.++...++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..        +..+++...          +. 
T Consensus        16 l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~   95 (232)
T d2awna2          16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSF   95 (232)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------
T ss_pred             EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHH
Confidence            55667777889999999999999999999999999888888877665421        111111111          10 


Q ss_pred             ---hh------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          120 ---IR------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       120 ---~r------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                         .+      ...++.++++.+++.......  ...||+|++|++.+|+++..+++++|.|.|
T Consensus        96 ~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~--~~~LSGGqkQRvaiAraL~~~P~illlDEP  157 (232)
T d2awna2          96 GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVAEPSVFLLDEP  157 (232)
T ss_dssp             ---------CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSEEEEEST
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhCCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence               00      112467789999987643332  236999999999999999999999999999

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=2.3e-11  Score=107.77  Aligned_cols=73  Identities=16%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-------hhhhhhHHHHHHH-H---hhccC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-------MTFMSNMLYACSI-L---YKTRL  232 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-------~~~~~~~l~~~~~-l---~~~~~  232 (426)
                      +...+.+|||+|+..........        ...++.+++++|.......       ..+... ...... +   ...+.
T Consensus        42 ~~~~~~~~D~~gq~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  112 (200)
T d1zcba2          42 KNVPFKMVDVGGQRSERKRWFEC--------FDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNV  112 (200)
T ss_dssp             TTEEEEEEEECC-------CTTS--------CTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTS
T ss_pred             eeeeeeeecccceeeeccccccc--------ccccceeEEEEEcCCcceeeeecccchhhhHH-HHHHHHHhhChhhcCc
Confidence            44688999999996642111100        1336789999998775442       111111 111111 1   24588


Q ss_pred             CeEEEEecCCCCC
Q 014354          233 PLVLAFNKTDVAQ  245 (426)
Q Consensus       233 P~IlVlNKiDl~~  245 (426)
                      |++||+||+|+..
T Consensus       113 piilv~NK~Dl~~  125 (200)
T d1zcba2         113 SIILFLNKTDLLE  125 (200)
T ss_dssp             EEEEEEECHHHHH
T ss_pred             eEEEEeccchhhh
Confidence            9999999999754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.18  E-value=5.5e-12  Score=115.97  Aligned_cols=114  Identities=15%  Similarity=0.104  Sum_probs=83.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------------cccccccccccc----h
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AVMTLPFAANID----I  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------------~v~~~~~~t~i~----~  120 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.              .+..+++..++.    +
T Consensus        19 l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV   98 (240)
T d1g2912          19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV   98 (240)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred             EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhh
Confidence            5566677788899999999999999999999999988887777655431              112222221110    1


Q ss_pred             hh----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 RD----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 r~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .+                .-++.++++.+++......  ....||+|++|++.+|+++..+++++|.|.|
T Consensus        99 ~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~--~p~~LSGGqkQRv~IAraL~~~P~iLllDEP  166 (240)
T d1g2912          99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEP  166 (240)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred             hHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            11                1146778999998754332  2346999999999999999999999999999

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=5.2e-11  Score=104.61  Aligned_cols=110  Identities=18%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|..|||||||++++....++..+..              +..+.                              
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t~~~~--------------~~~~~------------------------------   38 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--------------ETHFT------------------------------   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCSEE--------------EEEEE------------------------------
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCccEE--------------EEEEE------------------------------
Confidence            5799999999999999999987765431110              00000                              


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCch---hh---hhhHHH-
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---TF---MSNMLY-  222 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~---~~---~~~~l~-  222 (426)
                                   .....+.+|||+|+..+......-        -..++.+++|+|........   .+   ...... 
T Consensus        39 -------------~~~~~~~i~D~~Gq~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~   97 (195)
T d1svsa1          39 -------------FKDLHFKMFDVGGQRSERKKWIHC--------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL   97 (195)
T ss_dssp             -------------ETTEEEEEEEECCSGGGGGGGGGG--------CTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred             -------------eeeeeeeeeccccccccccchhhc--------ccCCceeeeEEeecccchHHHHhhhhHHHHHHHHH
Confidence                         234688999999998863211110        13468999999876443221   11   101111 


Q ss_pred             HHHHH---hhccCCeEEEEecCCCC
Q 014354          223 ACSIL---YKTRLPLVLAFNKTDVA  244 (426)
Q Consensus       223 ~~~~l---~~~~~P~IlVlNKiDl~  244 (426)
                      ....+   .....|+++++||+|+.
T Consensus        98 ~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          98 FDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             HHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHhcccccCCCCEEEEeccchhh
Confidence            11112   13468999999999964

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2e-11  Score=107.84  Aligned_cols=180  Identities=15%  Similarity=0.171  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls  149 (426)
                      .+|+++|..|||||||++++....+..               .| |..++.                      .+..   
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~~~---------------~p-TiG~~~----------------------~~~~---   41 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHGSG---------------VP-TTGIIE----------------------YPFD---   41 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTSSC---------------CC-CCSCEE----------------------EEEE---
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCC---------------Cc-eeeEEE----------------------EEEe---
Confidence            579999999999999999998765421               11 110100                      0000   


Q ss_pred             ccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCc-------hhhhhhHHH
Q 014354          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-------MTFMSNMLY  222 (426)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~-------~~~~~~~l~  222 (426)
                                   .....+.+|||+|+..+......      .  -..++.+++++|.......       ..+......
T Consensus        42 -------------~~~~~~~~~d~~g~~~~~~~~~~------~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~  100 (200)
T d2bcjq2          42 -------------LQSVIFRMVDVGGQRSERRKWIH------C--FENVTSIMFLVALSEYDQVLVESDNENRMEESKAL  100 (200)
T ss_dssp             -------------CSSCEEEEEECCCSTTGGGGGGG------G--CSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred             -------------ccceeeeeccccccccccccccc------c--ccccceeeEeeeccchhhhhhhhccccchHHHHHH
Confidence                         24468899999999775211110      0  1346889999998654321       111111111


Q ss_pred             HHHHHh---hccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccch---hhhHHHHhhhhHh-hhhcCCceEEeec
Q 014354          223 ACSILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSY---TSTLTNSLSLALD-EFYKNLKSVGVSS  295 (426)
Q Consensus       223 ~~~~l~---~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~~vv~vSA  295 (426)
                      ....+.   ..+.|.++|+||+|+........   ......+.....+.-   ...........+. .......++.+||
T Consensus       101 ~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSA  177 (200)
T d2bcjq2         101 FRTIITYPWFQNSSVILFLNKKDLLEEKIMYS---HLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA  177 (200)
T ss_dssp             HHHHHHCGGGSSSEEEEEEECHHHHHHHTTTS---CHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCT
T ss_pred             HHHHHhhhhccCccEEEecchhhhhhhcccch---HHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEE
Confidence            122222   35789999999999764321100   000000000000000   0000000000000 0001234678999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 014354          296 VSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       296 ~~g~gv~~l~~~l~~~~~~  314 (426)
                      ++|.||.++|+.|.+.+..
T Consensus       178 k~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         178 TDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             EcCHhHHHHHHHHHHHHHH
Confidence            9999999999999776653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.14  E-value=1.6e-10  Score=104.04  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~  143 (426)
                      .+.+.+.+|+++|++||||||.+-+|.......+.+++++..|..-    .+      ..-..+..-+.+++.-..  ..
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R----~g------a~eQL~~~a~~l~v~~~~--~~   74 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR----PA------ALEQLQQLGQQIGVPVYG--EP   74 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS----HH------HHHHHHHHHHHHTCCEEC--CT
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc----cc------hhHHHHHhccccCcceee--cc
Confidence            3455778999999999999999999998887778899998877321    00      011111122233322100  00


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHH
Q 014354          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (426)
Q Consensus       144 ~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~  223 (426)
                      +...+...+.+  .+..+...+.+++||||||..........-..+........++-+++|+++..+.+.....      
T Consensus        75 ~~~~~~~~~~~--a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~------  146 (211)
T d1j8yf2          75 GEKDVVGIAKR--GVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA------  146 (211)
T ss_dssp             TCCCHHHHHHH--HHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH------
T ss_pred             cchhhhHHHHH--HHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH------
Confidence            00001111111  1222235679999999999743211111112333344445578899999997765433211      


Q ss_pred             HHHHhhccCCeEEEEecCCCCCh
Q 014354          224 CSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       224 ~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      ....... -+.-+|++|.|-...
T Consensus       147 ~~~~~~~-~~~~lI~TKlDet~~  168 (211)
T d1j8yf2         147 SKFNQAS-KIGTIIITKMDGTAK  168 (211)
T ss_dssp             HHHHHHC-TTEEEEEECTTSCSC
T ss_pred             hhhhccc-CcceEEEecccCCCc
Confidence            1111222 234588999998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.13  E-value=6e-11  Score=108.11  Aligned_cols=114  Identities=12%  Similarity=0.118  Sum_probs=85.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------cccccccccc----chh-----
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANI----DIR-----  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------v~~~~~~t~i----~~r-----  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..        +..+++..++    .++     
T Consensus        16 L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~   95 (229)
T d3d31a2          16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF   95 (229)
T ss_dssp             EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHH
Confidence            45566777889999999999999999999999999999888888665521        1111111111    011     


Q ss_pred             --------hhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 --------~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                              +.-++.++++.+++.......  ...||+|++|++.+|+++..+++++|+|.|
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSGG~~QRvaiAraL~~~P~iLllDEP  154 (229)
T d3d31a2          96 GMRMKKIKDPKRVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVTNPKILLLDEP  154 (229)
T ss_dssp             HHHHHCCCCHHHHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred             HHhhccccHHHHHHHHHHHhcchhhHhCC--hhhCCHHHhcchhhhhhhhccCCceeecCC
Confidence                    122467889999987654433  246999999999999999999999999999

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.13  E-value=5.5e-11  Score=109.17  Aligned_cols=119  Identities=15%  Similarity=0.110  Sum_probs=86.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-------------cccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------VMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-------------v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..             +..+++..++    .+.
T Consensus        21 L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~  100 (242)
T d1oxxk2          21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (242)
T ss_dssp             EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHH
Confidence            55667778889999999999999999999999998888777776554311             1111111110    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC-Ccccc
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEI  179 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP-Gi~e~  179 (426)
                      +                ..++.++++.+++........  ..||+|++|++.+|+++..+++++|.|.| +-.++
T Consensus       101 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p--~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~  173 (242)
T d1oxxk2         101 ENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA  173 (242)
T ss_dssp             HHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG--GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCG
T ss_pred             HHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh--hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCH
Confidence            1                124678899999976444333  36999999999999999999999999999 44444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=8.5e-11  Score=107.89  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-------------ccccccccccc----chh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------------AVMTLPFAANI----DIR  121 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-------------~v~~~~~~t~i----~~r  121 (426)
                      ..+.+....++.+++|+|++|||||||++.|.|...+..+.+.+.+.+.             .+..+++..++    .+.
T Consensus        21 l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~  100 (240)
T d3dhwc1          21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF  100 (240)
T ss_dssp             EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHH
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHH
Confidence            5566777888999999999999999999999999988888887766541             12222222211    011


Q ss_pred             h----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          122 D----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       122 ~----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +                ..++.++++.+++.+......  ..||+|++|++.+|+++..+++++|.|.|
T Consensus       101 eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~--~~LSGG~~QRvaiAraL~~~P~lLllDEP  167 (240)
T d3dhwc1         101 GNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEA  167 (240)
T ss_dssp             HHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB--SCCCHHHHHHHHHHHHHHTCCSEEEEESG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHhhhhccCCCeEEeccc
Confidence            1                124578899999986544333  46999999999999999999999999999

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.11  E-value=2.6e-10  Score=104.34  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc--------ccccccccccc----chhh--------------h
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------AVMTLPFAANI----DIRD--------------T  123 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~--------~v~~~~~~t~i----~~r~--------------~  123 (426)
                      .+++|+|++|||||||++.|.|...+..+.+.+.+.+.        .+..+++...+    .+.+              .
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~  104 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHH
Confidence            47899999999999999999999999988888766541        12222322211    1111              1


Q ss_pred             HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .++.++++.+++........  ..||+|++|++.+|+++..+++++|+|.|
T Consensus       105 ~~v~~~l~~~gl~~~~~~~~--~~LSGG~kQRvaiAral~~~P~illlDEP  153 (240)
T d2onka1         105 RRVREMAEKLGIAHLLDRKP--ARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCG--GGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             HHHHHHHHhcCcHhhhhCCh--hhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence            24678899999976544433  46999999999999999999999999999

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.08  E-value=2.3e-10  Score=104.40  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=81.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc--------------cccccccccc----ch
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------------VMTLPFAANI----DI  120 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~--------------v~~~~~~t~i----~~  120 (426)
                      ..+.++...++.+++|+|++|||||||++.|.|-..+..+.+.+.+.+..              +..+++..++    .+
T Consensus        21 l~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv  100 (230)
T d1l2ta_          21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA  100 (230)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred             EeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccH
Confidence            55667778899999999999999999999999998888888877665411              1111111110    01


Q ss_pred             hh-------------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          121 RD-------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       121 r~-------------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .+                   ..++.++++.+++..... -.....||+|++|++.+|+++..+++++|.|.|
T Consensus       101 ~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEP  172 (230)
T d1l2ta_         101 LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA-NHKPNQLSGGQQQRVAIARALANNPPIILADQP  172 (230)
T ss_dssp             HHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhh-cCChhhCCHHHHHHHHHHhhhhcCCCEEEecCC
Confidence            11                   113456677888754211 111235899999999999999999999999999

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.05  E-value=8.3e-11  Score=109.27  Aligned_cols=115  Identities=12%  Similarity=0.120  Sum_probs=84.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc-----------ccccccccccc----chhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-----------AVMTLPFAANI----DIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~-----------~v~~~~~~t~i----~~r~~  123 (426)
                      ..+++...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.           ++...++...+    .+.+.
T Consensus        20 L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~en   99 (254)
T d1g6ha_          20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN   99 (254)
T ss_dssp             EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred             EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeee
Confidence            5677788889999999999999999999999999999888888876652           12223332211    11111


Q ss_pred             -----------------------------HHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 -----------------------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 -----------------------------~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                                   .+..++++.+++......  ....||+|++|++.+++++..+++++|+|.|
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~Qrv~iAraL~~~P~llilDEP  177 (254)
T d1g6ha_         100 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR--KAGELSGGQMKLVEIGRALMTNPKMIVMDEP  177 (254)
T ss_dssp             HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS--BGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             eeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccC--chhhCCcHHHHHHHHHHHHHhCcCchhhcCC
Confidence                                         134456777776653322  2346999999999999999999999999999


Q ss_pred             C
Q 014354          175 G  175 (426)
Q Consensus       175 G  175 (426)
                      -
T Consensus       178 t  178 (254)
T d1g6ha_         178 I  178 (254)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=8.3e-11  Score=110.68  Aligned_cols=106  Identities=17%  Similarity=0.241  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~l  148 (426)
                      +.+|+|||.||||||||+|+|++...             .+.++|++|                  +.||-|++..   -
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-------------~~~~ypf~t------------------i~pn~gvv~v---~   47 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI-------------EAANYPFCT------------------IEPNTGVVPM---P   47 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------------------CCCC------------------CCCCSSEEEC---C
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCC-------------ccccCCCCC------------------CCCceEEEec---c
Confidence            35899999999999999999998863             367888888                  5667776542   1


Q ss_pred             cccHHHHHHHHHHHh-cCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCCC
Q 014354          149 TTKFDEVISLIERRA-DHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS  210 (426)
Q Consensus       149 s~~~~~~~~~~~~~~-~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~~  210 (426)
                      ..-++++..+..... -...+.|+|.||+...... ..++..+.+.+  ..+|++++|||++..
T Consensus        48 d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg~~FL~~i--r~~d~LihVVr~f~~  109 (278)
T d1jala1          48 DPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANI--RETDAIGHVVRCFEN  109 (278)
T ss_dssp             CHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHH--HTCSEEEEEEECSCC
T ss_pred             cHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCccHHHHHHH--HhccceEEEeeccCC
Confidence            112223222221000 0135779999999875322 22444444444  347999999998643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=1.5e-10  Score=109.96  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+|+|+|.||||||||+|+|++...+.            +.++||+|                  +.||-|++..   
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~------------~anypftT------------------i~pn~g~v~v---   55 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGN------------PANYPYAT------------------IDPEEAKVAV---   55 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTS------------TTCCSSCC------------------CCTTEEEEEE---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCC------------cCCCCccC------------------ccCCeEEEec---
Confidence            45689999999999999999999876542            67889888                  4445554321   


Q ss_pred             ccccHHHHHHHHHHH-hcCCCEEEEcCCCcccccch-hchHHHHHHHHHhcCCcEEEEEEeCCC
Q 014354          148 FTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPR  209 (426)
Q Consensus       148 ls~~~~~~~~~~~~~-~~~~~~~liDTPGi~e~~~~-~~~~~~l~~~~~~~~~d~vl~VVDa~~  209 (426)
                      -..-++++....... .....+.|+|.||+...... ..+|..+...+  ..+|++++|||++.
T Consensus        56 ~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~i--r~~d~lihVV~~f~  117 (296)
T d1ni3a1          56 PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHV--RAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHH--TTCSEEEEEEECCC
T ss_pred             cccchhhhhhcccCCceecccceeeeccccccccccccccHHHHHHHh--hccceeEEEEeccC
Confidence            011111211111100 01246789999999886322 22455555544  45799999999976

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=9e-11  Score=107.88  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=84.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc---------ccccccccccc----chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANI----DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~---------~v~~~~~~t~i----~~r~~~-  124 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.++         .+...|+...+    ...+.+ 
T Consensus        18 l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~   97 (238)
T d1vpla_          18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLR   97 (238)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHH
T ss_pred             EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHH
Confidence            6667777889999999999999999999999999999988888877652         23333333221    111111 


Q ss_pred             ---------------HHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          125 ---------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       125 ---------------~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                     .+..+++.+++.+..  -.....+|+|+++++.+|+++..+++++|+|.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lSgG~~qrv~iA~al~~~p~illLDEP  160 (238)
T d1vpla_          98 FVAGFYASSSSEIEEMVERATEIAGLGEKI--KDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  160 (238)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHCCGGGG--GSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--hhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                           234567777775432  223446899999999999999999999999999

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.03  E-value=6.8e-11  Score=108.89  Aligned_cols=114  Identities=13%  Similarity=0.161  Sum_probs=79.3

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------cccccccccc----chhhh
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANI----DIRDT  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------v~~~~~~t~i----~~r~~  123 (426)
                      ..+.++..+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..           +...|+...+    .+++.
T Consensus        22 l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en  101 (240)
T d1ji0a_          22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHH
Confidence            56777788899999999999999999999999999999888888766521           2222222211    11111


Q ss_pred             H---------------HHHHHHHHc-CCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          124 I---------------RYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       124 ~---------------~~~~~~~~~-~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      +               ..+.++..+ ++.......  ...||+|++|++.+++++..+++++|+|.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~LSGG~~Qrv~iAraL~~~P~lLllDEP  166 (240)
T d1ji0a_         102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMSRPKLLMMDEP  166 (240)
T ss_dssp             HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCc--hhhCCHHHHHHHHHHHHHHhCCCEeeecCC
Confidence            1               123334333 232222211  235899999999999999999999999999

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=2.3e-09  Score=96.22  Aligned_cols=156  Identities=17%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      .+++.+|+++|++||||||.+-+|.......+.++.++..|..-   +       ...-..+...+.+++.-     ...
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R---~-------gA~eQL~~~a~~l~v~~-----~~~   70 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR---A-------AAVEQLQVWGQRNNIPV-----IAQ   70 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC---H-------HHHHHHHHHHHHTTCCE-----ECC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc---c-------cchhhhhhhhhhcCCcc-----ccc
Confidence            34567899999999999999999998877778889888776311   0       11111222233343221     100


Q ss_pred             ccccccHHHHHHHH--HHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchhhh
Q 014354          146 NLFTTKFDEVISLI--ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       146 ~~ls~~~~~~~~~~--~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                      . -.......+..+  .+...+++++||||||....  ...+...+......      ..++-+++|+|+..+...... 
T Consensus        71 ~-~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~--d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~-  146 (211)
T d2qy9a2          71 H-TGADSASVIFDAIQAAKARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-  146 (211)
T ss_dssp             S-TTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGG--HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHH-
T ss_pred             c-cCCCHHHHHHHHHHHHHHcCCCEEEeccCCCccc--cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHH-
Confidence            0 011122222111  12356799999999997443  12222222222221      136789999999765433221 


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                           +...... --+.-++++|.|-...
T Consensus       147 -----~~~~~~~-~~~~~lIlTKlDe~~~  169 (211)
T d2qy9a2         147 -----AKLFHEA-VGLTGITLTKLDGTAK  169 (211)
T ss_dssp             -----HHHHHHH-SCCCEEEEECCTTCTT
T ss_pred             -----Hhhhhhc-cCCceEEEeecCCCCC
Confidence                 1121222 2356789999998654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=3.1e-09  Score=95.59  Aligned_cols=156  Identities=18%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~  145 (426)
                      ..++.+|+++|++||||||.+-+|..+....+.++.++..|.--   .       ...-..+..-+.+++.     +...
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R---~-------gA~eQL~~~a~~l~i~-----~~~~   72 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---A-------AAIEQLKIWGERVGAT-----VISH   72 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---H-------HHHHHHHHHHHHHTCE-----EECC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc---c-------chhHHHHHHhhhcCcc-----cccc
Confidence            45677999999999999999999998887788899998777311   0       0011111122233311     1110


Q ss_pred             ccccccHHHHHH--HHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHh------cCCcEEEEEEeCCCCCCchhhh
Q 014354          146 NLFTTKFDEVIS--LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFM  217 (426)
Q Consensus       146 ~~ls~~~~~~~~--~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~------~~~d~vl~VVDa~~~~~~~~~~  217 (426)
                      . -.........  .......+++++||||||.....  ..+...+......      ..++-+++|+|+..+.....  
T Consensus        73 ~-~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d--~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~--  147 (213)
T d1vmaa2          73 S-EGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTK--KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLV--  147 (213)
T ss_dssp             S-TTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCH--HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHH--
T ss_pred             C-CCCcHHHHHHHHHHHHHHcCCCEEEEeccccccch--HHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhh--
Confidence            0 0111111111  12233567999999999975531  2222222222221      12577999999965433221  


Q ss_pred             hhHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          218 SNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       218 ~~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                          .+.... +.--+.=+|++|.|-...
T Consensus       148 ----~~~~~~-~~~~~~~lI~TKlDe~~~  171 (213)
T d1vmaa2         148 ----QAKIFK-EAVNVTGIILTKLDGTAK  171 (213)
T ss_dssp             ----HHHHHH-HHSCCCEEEEECGGGCSC
T ss_pred             ----hhhhhc-cccCCceEEEecccCCCc
Confidence                111111 222356789999997653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.97  E-value=5.1e-09  Score=93.82  Aligned_cols=155  Identities=19%  Similarity=0.133  Sum_probs=86.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +++.+|+++|++||||||.+-+|.......+.++.++..|..-   + +.    .+  .++..-+.+++.     +....
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R---~-gA----~e--QL~~~a~~l~i~-----~~~~~   68 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR---A-AG----GT--QLSEWGKRLSIP-----VIQGP   68 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS---T-TH----HH--HHHHHHHHHTCC-----EECCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc---c-cc----hh--hHhhcccccCce-----EEecc
Confidence            3567899999999999999999998887788899998877321   0 10    01  111122233321     11000


Q ss_pred             cccccHHHHHH--HHHHHhcCCCEEEEcCCCcccccchhchHHHHHHH---HH---hcCCcEEEEEEeCCCCCCchhhhh
Q 014354          147 LFTTKFDEVIS--LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA---FA---STFPTVVTYVVDTPRSANPMTFMS  218 (426)
Q Consensus       147 ~ls~~~~~~~~--~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~---~~---~~~~d~vl~VVDa~~~~~~~~~~~  218 (426)
                      . .......+.  .......+++++||||||....  ...+...+...   ..   ...++-+++|+|+..+....... 
T Consensus        69 ~-~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~--d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-  144 (207)
T d1okkd2          69 E-GTDPAALAYDAVQAMKARGYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-  144 (207)
T ss_dssp             T-TCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-
T ss_pred             C-CccHHHHHHHHHHHHHHCCCCEEEcCccccchh--hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-
Confidence            0 111222221  1112345789999999997543  12222222222   21   12467899999998776443321 


Q ss_pred             hHHHHHHHHhhccCCeEEEEecCCCCCh
Q 014354          219 NMLYACSILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       219 ~~l~~~~~l~~~~~P~IlVlNKiDl~~~  246 (426)
                           ....... -+.=++++|.|-...
T Consensus       145 -----~~~~~~~-~~~~lI~TKlDet~~  166 (207)
T d1okkd2         145 -----KKFHEAV-GLTGVIVTKLDGTAK  166 (207)
T ss_dssp             -----HHHHHHH-CCSEEEEECTTSSCC
T ss_pred             -----HHhhhcc-CCceEEEeccCCCCC
Confidence                 1111122 355789999997654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.92  E-value=2.3e-10  Score=106.26  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=81.5

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----------------------ccccccc
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPFA  115 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----------------------v~~~~~~  115 (426)
                      ..+.++...++.+++|+|++|||||||++.|.|...+..+.+.+.+.+..                       +..+++.
T Consensus        18 l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~   97 (258)
T d1b0ua_          18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH   97 (258)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred             EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEec
Confidence            56677778899999999999999999999999998888777776544311                       0001111


Q ss_pred             cc----cchhh-----------------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          116 AN----IDIRD-----------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       116 t~----i~~r~-----------------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                      .+    ..+.+                 .-++.++++.+++.+..-- .....||+|++|++.+|+++..+++++|.|.|
T Consensus        98 ~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~p~~LSGG~~QRv~iAraL~~~P~llilDEP  176 (258)
T d1b0ua_          98 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQRVSIARALAMEPDVLLFDEP  176 (258)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhc-cCcccccHHHHHHHHHHHHHhcCCCEEEeccc
Confidence            00    00111                 1235677888988653211 11235899999999999999999999999999

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.92  E-value=1e-09  Score=100.97  Aligned_cols=117  Identities=13%  Similarity=0.037  Sum_probs=78.7

Q ss_pred             CCCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH
Q 014354           58 AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI  124 (426)
Q Consensus        58 ~~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~  124 (426)
                      ...+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.          .+..+++.+.+   .+++.+
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi   96 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL   96 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhhe
Confidence            35566777889999999999999999999999999999888888866541          12222332211   012211


Q ss_pred             -----------HHHHHHHHcCCCCC-----CCcccc----cccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          125 -----------RYKEVMKQFNLGPN-----GGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       125 -----------~~~~~~~~~~l~~n-----g~i~~~----~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                                 ...+.++..++...     .+.-+.    -..||+|++|++.+|+++..+++++|+|.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEp  166 (242)
T d1mv5a_          97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA  166 (242)
T ss_dssp             TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                       12233333332221     111111    124899999999999999999999999999

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.6e-10  Score=103.32  Aligned_cols=117  Identities=13%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTIR  125 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~~  125 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+.+.          .+..+++.+.+   .+++.+.
T Consensus        30 L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~  109 (251)
T d1jj7a_          30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA  109 (251)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred             EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhh
Confidence            4566777889999999999999999999999999999888887766541          11122222111   1121111


Q ss_pred             -----------H---------HHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          126 -----------Y---------KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       126 -----------~---------~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                                 .         .+.+..+..+...-+-..-..||+|++|++.+|+++..+++++|+|.|-
T Consensus       110 ~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpT  179 (251)
T d1jj7a_         110 YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDAT  179 (251)
T ss_dssp             CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcC
Confidence                       1         1122222111111111112358999999999999999999999999993

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=4.3e-10  Score=102.02  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             cCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCch------hhhhhHHH-HHHHHh---hccCC
Q 014354          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM------TFMSNMLY-ACSILY---KTRLP  233 (426)
Q Consensus       164 ~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~------~~~~~~l~-~~~~l~---~~~~P  233 (426)
                      ++..+.+||++|+..........        -..++.+++|+|........      ..+...+. ....+.   ..++|
T Consensus        45 ~~~~~~~~D~~Gq~~~r~~w~~~--------~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~  116 (221)
T d1azta2          45 DKVNFHMFDVGGQRDERRKWIQC--------FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS  116 (221)
T ss_dssp             TTEEEEEEECCCSTTTTTGGGGG--------CTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred             CcEEEEEEecCccceeccchhhh--------cccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCc
Confidence            44688999999997652111100        13468999999987543210      11111111 111122   34789


Q ss_pred             eEEEEecCCCCChH
Q 014354          234 LVLAFNKTDVAQHE  247 (426)
Q Consensus       234 ~IlVlNKiDl~~~~  247 (426)
                      ++|++||+|+....
T Consensus       117 iil~~NK~Dl~~~k  130 (221)
T d1azta2         117 VILFLNKQDLLAEK  130 (221)
T ss_dssp             EEEEEECHHHHHHH
T ss_pred             EEEEechhhhhhhh
Confidence            99999999986543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=3.7e-09  Score=94.37  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=78.1

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc-----cccccccc----ccchhh-------
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA----NIDIRD-------  122 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~-----v~~~~~~t----~i~~r~-------  122 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..     +...|...    .+.+.+       
T Consensus        17 l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~   96 (200)
T d1sgwa_          17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS   96 (200)
T ss_dssp             EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHH
T ss_pred             EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHH
Confidence            44556667788899999999999999999999999998888877554311     11111111    111111       


Q ss_pred             -------hHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhcCCCEEEEcCC
Q 014354          123 -------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (426)
Q Consensus       123 -------~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTP  174 (426)
                             ...+.+.++.+++...   -.....||+|+++++.+++++..+++++|+|.|
T Consensus        97 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~LSgG~~qrv~ia~al~~~~~llllDEP  152 (200)
T d1sgwa_          97 LYGVKVNKNEIMDALESVEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP  152 (200)
T ss_dssp             HTTCCCCHHHHHHHHHHTTCCCT---TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred             hcCCccCHHHHHHHHHHcCCccc---ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCc
Confidence                   1123345666665331   123346899999999999999999999999999

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.89  E-value=6.2e-09  Score=93.32  Aligned_cols=154  Identities=20%  Similarity=0.206  Sum_probs=87.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCccccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~~  147 (426)
                      ...+++++|++||||||.+-+|.......+.++.++..|..-   + +.    .  -..+..-+.+++.     +.... 
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R---~-gA----~--eQL~~~a~~l~v~-----~~~~~-   72 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR---P-AA----R--EQLRLLGEKVGVP-----VLEVM-   72 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC---H-HH----H--HHHHHHHHHHTCC-----EEECC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc---c-hH----H--HHHHHHHHhcCCc-----ccccc-
Confidence            446789999999999999999998888888899888777321   0 00    0  1111122233321     11100 


Q ss_pred             ccccHHHHHHH--HHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHH
Q 014354          148 FTTKFDEVISL--IERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (426)
Q Consensus       148 ls~~~~~~~~~--~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~  225 (426)
                      -..........  ..+...+++++||||||....  .......+........++-+++|+|+..+.......      ..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~--d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~------~~  144 (207)
T d1ls1a2          73 DGESPESIRRRVEEKARLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA------RA  144 (207)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH------HH
T ss_pred             ccchhhHHHHHHHHHHhhccCcceeecccccchh--hhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH------HH
Confidence            01122222211  122356789999999997553  222334444444556688999999997654332211      11


Q ss_pred             HHhhccCCeEEEEecCCCCCh
Q 014354          226 ILYKTRLPLVLAFNKTDVAQH  246 (426)
Q Consensus       226 ~l~~~~~P~IlVlNKiDl~~~  246 (426)
                      +....+ +.=+|++|.|-...
T Consensus       145 f~~~~~-~~~~I~TKlDe~~~  164 (207)
T d1ls1a2         145 FDEKVG-VTGLVLTKLDGDAR  164 (207)
T ss_dssp             HHHHTC-CCEEEEECGGGCSS
T ss_pred             HHhhCC-CCeeEEeecCcccc
Confidence            111122 34589999997654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.8e-09  Score=97.85  Aligned_cols=117  Identities=16%  Similarity=0.064  Sum_probs=77.4

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+|+|+|++|||||||++.|+|...+..+.+.+.+.+..          +..+++.+.+   .+++.+ 
T Consensus        19 L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~   98 (241)
T d2pmka1          19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS   98 (241)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHC
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccccccc
Confidence            45566777889999999999999999999999999888888877665421          2222222211   122221 


Q ss_pred             ---------HHHHHHHHc------CCCCCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ---------RYKEVMKQF------NLGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ---------~~~~~~~~~------~l~~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .+...++..      ...+++-   +-..-..||+|++|++.+|+++..+++++|+|.|-
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpt  167 (241)
T d2pmka1          99 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  167 (241)
T ss_dssp             TTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             ccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCc
Confidence                     112222222      2222211   11112358999999999999999999999999994

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.85  E-value=1.9e-09  Score=99.76  Aligned_cols=117  Identities=13%  Similarity=0.031  Sum_probs=77.0

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc----------cccccccccc---chhhh--
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANI---DIRDT--  123 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~----------v~~~~~~t~i---~~r~~--  123 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|...+..+.+.+.+.+..          +...++.+.+   .++..  
T Consensus        31 L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~  110 (253)
T d3b60a1          31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA  110 (253)
T ss_dssp             EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred             eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhh
Confidence            55667778889999999999999999999999999888888887665421          2222222211   01111  


Q ss_pred             ---------HHHHHHHHHcCCC------CC---CCcccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          124 ---------IRYKEVMKQFNLG------PN---GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       124 ---------~~~~~~~~~~~l~------~n---g~i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               -.+.++++..++.      |+   .-+-..-..||+|++|++.+|+++..+++++|+|.|-
T Consensus       111 ~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpt  180 (253)
T d3b60a1         111 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT  180 (253)
T ss_dssp             TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred             hcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence                     1122222222211      11   1111111248999999999999999999999999994

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=2.5e-09  Score=100.48  Aligned_cols=115  Identities=21%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec------cCccccccccc--cccch---hhhHHHH
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFA--ANIDI---RDTIRYK  127 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~------~d~~v~~~~~~--t~i~~---r~~~~~~  127 (426)
                      ..+.+....++.+++|+|++|||||||++.|+|...+..+.+.+.+      .++.+  ++.+  .++..   .+...+.
T Consensus        52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l--~~~tv~eni~~~~~~~~~~~~  129 (281)
T d1r0wa_          52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI--MPGTIKENIIFGVSYDEYRYK  129 (281)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCC--CSEEHHHHHTTTSCCCHHHHH
T ss_pred             EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccc--cCceeeccccccccccchHHH
Confidence            5566777889999999999999999999999999888766554433      22211  1111  01110   0111223


Q ss_pred             HHHHHcCCC------CCCC---cccccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          128 EVMKQFNLG------PNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       128 ~~~~~~~l~------~ng~---i~~~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                      .+.+...+.      +.+-   +-.....||+|+++++.+|+++..+++++|+|.|-
T Consensus       130 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPt  186 (281)
T d1r0wa_         130 SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF  186 (281)
T ss_dssp             HHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred             HHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcc
Confidence            333322211      1100   00111238999999999999999999999999994

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=8.7e-09  Score=94.00  Aligned_cols=113  Identities=22%  Similarity=0.156  Sum_probs=77.8

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc----------------cccccccccc---
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------------MTLPFAANID---  119 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v----------------~~~~~~t~i~---  119 (426)
                      ..+.+...+++.+++|+|++|||||||++.|+|.. +..+.+.+.+.+...                ...++...+.   
T Consensus        15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            55667778899999999999999999999999965 566677665554100                0111111110   


Q ss_pred             ------hhhhHHHHHHHHHcCCCCCCCcccccccccccHHHHHHHHHHHhc-------CCCEEEEcCC
Q 014354          120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD-------HLDYVLVDTP  174 (426)
Q Consensus       120 ------~r~~~~~~~~~~~~~l~~ng~i~~~~~~ls~~~~~~~~~~~~~~~-------~~~~~liDTP  174 (426)
                            ....-.+.++.+.+++....+.  ..+.||+|++|++.+++++..       +++++|+|.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEP  159 (231)
T d1l7vc_          94 TLHQHDKTRTELLNDVAGALALDDKLGR--STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP  159 (231)
T ss_dssp             HHHCSCTTCHHHHHHHHHHTTCTTTTTS--BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSC
T ss_pred             hhccchhhHHHHHHHHHHhcCCHhHhCc--ChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCC
Confidence                  0011234567778888765432  234699999999999998864       6699999999

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=8.8e-08  Score=90.01  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=46.4

Q ss_pred             CCEEEEcCCCcccccchhc---hHH---HHHHHHHhcCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEe
Q 014354          166 LDYVLVDTPGQIEIFTWSA---SGA---IITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN  239 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~---~~~---~l~~~~~~~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlN  239 (426)
                      ..+.||||||+........   ...   .+...+.....+++++|+++...+....    .......+.....++++|+|
T Consensus       125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~----~~~~~~~~~~~~~r~i~Vlt  200 (299)
T d2akab1         125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD----ALKIAKEVDPQGQRTIGVIT  200 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH----HHHHHHHHCTTCSSEEEEEE
T ss_pred             CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH----HHHHHHHhCcCCCceeeEEe
Confidence            5789999999976432111   111   1222222233457777777765554432    12334445556678999999


Q ss_pred             cCCCCChH
Q 014354          240 KTDVAQHE  247 (426)
Q Consensus       240 KiDl~~~~  247 (426)
                      |+|+....
T Consensus       201 k~D~~~~~  208 (299)
T d2akab1         201 KLDLMDEG  208 (299)
T ss_dssp             CGGGSCTT
T ss_pred             ccccccch
Confidence            99998764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=1.1e-08  Score=94.53  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CCCCCCcCCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc----------ccccccccccc---chhhhH-
Q 014354           59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP----------AVMTLPFAANI---DIRDTI-  124 (426)
Q Consensus        59 ~~~~~~~~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~----------~v~~~~~~t~i---~~r~~~-  124 (426)
                      ..+.+...+++.+|+|+|++|||||||++.|+|...+..+.+.+.+.+.          .+..+++.+.+   .+++.+ 
T Consensus        34 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~  113 (255)
T d2hyda1          34 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL  113 (255)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHG
T ss_pred             eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHh
Confidence            4566677888999999999999999999999999999888888866542          12222222211   122222 


Q ss_pred             ---------HHHHHHHHcCCCC-----CCCccc----ccccccccHHHHHHHHHHHhcCCCEEEEcCCC
Q 014354          125 ---------RYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (426)
Q Consensus       125 ---------~~~~~~~~~~l~~-----ng~i~~----~~~~ls~~~~~~~~~~~~~~~~~~~~liDTPG  175 (426)
                               .+.++++..++..     ..|.-+    .-..||+|++|++.+|+++..+++++|+|.|=
T Consensus       114 ~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpt  182 (255)
T d2hyda1         114 LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT  182 (255)
T ss_dssp             GGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             ccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence                     2233444444321     012211    11248999999999999999999999999994

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.72  E-value=3.6e-08  Score=93.21  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CCEEEEcCCCcccccchhc---hHH---HHHHHHHhcCCc-EEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEE
Q 014354          166 LDYVLVDTPGQIEIFTWSA---SGA---IITEAFASTFPT-VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (426)
Q Consensus       166 ~~~~liDTPGi~e~~~~~~---~~~---~l~~~~~~~~~d-~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVl  238 (426)
                      ..+.||||||+........   ...   .+...+.. .++ ++++|+++.........    +.....+......+++|+
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~-~~~~~il~v~~~~~~~~~~~~----~~~~~~~~~~~~r~i~Vi  205 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK-KQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGVI  205 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHH-STTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHh-CCCceeEEeecccccccccHH----HHHHHHhCcCCCeEEEEE
Confidence            5789999999976532211   111   12222222 234 56666676654444321    233344444567899999


Q ss_pred             ecCCCCChH
Q 014354          239 NKTDVAQHE  247 (426)
Q Consensus       239 NKiDl~~~~  247 (426)
                      ||+|.....
T Consensus       206 tk~D~~~~~  214 (306)
T d1jwyb_         206 TKLDLMDKG  214 (306)
T ss_dssp             ECTTSSCSS
T ss_pred             eccccccch
Confidence            999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.59  E-value=9.7e-09  Score=95.97  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcccccccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA  116 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t  116 (426)
                      .++..|+|+|.||||||||+|+|.+.....            ++..|+.|
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~------------~~~~pG~T  147 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAK------------TGDRPGIT  147 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------------
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEE------------ECCccccc
Confidence            466789999999999999999999987553            66666666

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.36  E-value=1.7e-06  Score=73.93  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      +|+|+|+||+|||||++.|++......+.+.+.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~   35 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE   35 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECC
Confidence            6899999999999999999998776655554443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=7.5e-08  Score=87.17  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+++++|++|||||||+|+|++..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            45678999999999999999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=2.2e-07  Score=83.75  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+++++|.+|||||||+|+|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            35688999999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.16  E-value=4.5e-06  Score=74.53  Aligned_cols=164  Identities=17%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCC------CCCCCc
Q 014354           69 PVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL------GPNGGI  141 (426)
Q Consensus        69 ~~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l------~~ng~i  141 (426)
                      +.+|+|. +..|+||||+.-.|.......+.++.+++.|+.....+.......++......+.....+      ....+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   81 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcccchhhhccCCCcHHHhhhccccccc
Confidence            3567777 679999999999999888888889999998853222111110000000000000000000      000000


Q ss_pred             c--cc----cccccccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchh
Q 014354          142 L--TS----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT  215 (426)
Q Consensus       142 ~--~~----~~~ls~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~  215 (426)
                      .  ..    .............+...+...++++|+|+|+....        .....+  ..+|.+++++....    ..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~IiiD~~~~~~~--------~~~~~l--~~aD~viiv~~~~~----~s  147 (237)
T d1g3qa_          82 YVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPAGLQL--------DAMSAM--LSGEEALLVTNPEI----SC  147 (237)
T ss_dssp             EEECCCCSHHHHHHCCGGGHHHHHHTTGGGCSEEEEECCSSSSH--------HHHHHH--TTCSEEEEEECSCH----HH
T ss_pred             cccccccchhhhhhhhhHHHHHHHHHHHhcCCEEEEcccccccc--------cchhhh--hhhhcccccccccc----ee
Confidence            0  00    00000011222334444567799999999986542        222222  34799999988642    11


Q ss_pred             hhhhHHHHHHHHhhccCCeE-EEEecCCCCChH
Q 014354          216 FMSNMLYACSILYKTRLPLV-LAFNKTDVAQHE  247 (426)
Q Consensus       216 ~~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~~~  247 (426)
                      . .........+.+.++|.+ +|+||.+.....
T Consensus       148 ~-~~~~~~~~~~~~~~~~~~giv~N~~~~~~~~  179 (237)
T d1g3qa_         148 L-TDTMKVGIVLKKAGLAILGFVLNRYGRSDRD  179 (237)
T ss_dssp             H-HHHHHHHHHHHHTTCEEEEEEEEEETSCTTC
T ss_pred             c-chhhHHHHHHhhhhhhhhhhhhcccccccch
Confidence            1 111223445567788876 899999876543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=6.3e-07  Score=75.86  Aligned_cols=40  Identities=23%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .|+++|+|++|||||||+++|+......+.+++++..++.
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            3689999999999999999999988888888888877754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=5.2e-06  Score=76.85  Aligned_cols=85  Identities=27%  Similarity=0.426  Sum_probs=63.2

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (426)
                      ..+|+||+|+|+...++.....     +...+  .++|.|+|+||+|++.......|.+.+..                 
T Consensus        14 ~~~DvIl~V~DaR~P~ss~~~~-----l~~~~--~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----------------   69 (273)
T d1puja_          14 KLIDIVYELVDARIPMSSRNPM-----IEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFEN-----------------   69 (273)
T ss_dssp             GGCSEEEEEEETTSTTTTSCHH-----HHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----------------
T ss_pred             HhCCEEEEEEECCCCCCCCCHH-----HHHHH--cCCCeEEEEECccCCchHHHHHHHHHHHh-----------------
Confidence            3479999999998877664321     11222  27899999999999998876667655431                 


Q ss_pred             HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHHHHHHH
Q 014354          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (426)
Q Consensus       276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~~~~~~  314 (426)
                                .....+.+|+.++.|+..+...+...+.+
T Consensus        70 ----------~~~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          70 ----------QGIRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             ----------TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ----------cCCccceeecccCCCccccchhhhhhhhh
Confidence                      23568999999999999988887766655

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.10  E-value=1.5e-05  Score=70.88  Aligned_cols=161  Identities=16%  Similarity=0.196  Sum_probs=82.4

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHH------Hc-CCCCCCC-
Q 014354           70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK------QF-NLGPNGG-  140 (426)
Q Consensus        70 ~~v~ii-G~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~------~~-~l~~ng~-  140 (426)
                      .+|+|+ |..|+||||+.-.|.......+.++.+++.|+.....+..-.++-.... ..+++.      .. ...+.+- 
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   80 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVT-LQNVLAGEARIDEAIYVGPGGVK   80 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCC-HHHHHTTSSCGGGGCEECGGGCE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHhCCCcCcch-hhhhhccccccccccccCCccce
Confidence            356666 8899999999999998887778899999988654322211111000000 000000      00 0000000 


Q ss_pred             cccccccc----cccHHHHHHHHHHHhcCCCEEEEcCCCcccccchhchHHHHHHHHHhcCCcEEEEEEeCCCCCCchhh
Q 014354          141 ILTSLNLF----TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTF  216 (426)
Q Consensus       141 i~~~~~~l----s~~~~~~~~~~~~~~~~~~~~liDTPGi~e~~~~~~~~~~l~~~~~~~~~d~vl~VVDa~~~~~~~~~  216 (426)
                      ++.....+    ...-.++..+...+...++++|+|+|+.....        ....+  ..+|.+++|+....    ...
T Consensus        81 ~l~~~~~~~~~~~~~~~~l~~~l~~l~~~~D~viiD~~~~~~~~--------~~~~l--~~ad~v~~v~~~~~----~~~  146 (232)
T d1hyqa_          81 VVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLERS--------AVIAI--AAAQELLLVVNPEI----SSI  146 (232)
T ss_dssp             EEECCSCHHHHHHHCHHHHHHHHHHHHHTCSEEEEECCSSSSHH--------HHHHH--HHSSEEEEEECSSH----HHH
T ss_pred             eEeeecccccccccchhhHHHHHHHHhhccceeeecccccccch--------hHHHh--hhhheeeeeccccc----cch
Confidence            00000000    00112333444555678999999999976531        11111  23688888887632    111


Q ss_pred             hhhHHHHHHHHhhccCCeE-EEEecCCCCCh
Q 014354          217 MSNMLYACSILYKTRLPLV-LAFNKTDVAQH  246 (426)
Q Consensus       217 ~~~~l~~~~~l~~~~~P~I-lVlNKiDl~~~  246 (426)
                      . ........+.+.+.+.+ +|+||.+....
T Consensus       147 ~-~~~~~~~~~~~~~~~~~~iv~N~~~~~~~  176 (232)
T d1hyqa_         147 T-DGLKTKIVAERLGTKVLGVVVNRITTLGI  176 (232)
T ss_dssp             H-HHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred             h-hhhhhhhhhhhcccccccccccccccccc
Confidence            1 11222333445666654 78999875544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=2.5e-05  Score=69.91  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (426)
                      +..|.+++|+.+....-...++..   ++-.....++|.+||+||+|+........+.....                  
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR---~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~------------------   67 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDK---FLVLAEKNELETVMVINKMDLYDEDDLRKVRELEE------------------   67 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHH---HHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH------------------
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHH---HHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhc------------------
Confidence            346888888877543222222211   12234467999999999999998775444433222                  


Q ss_pred             HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                             .+....+++.+||++|.|++.|..++.
T Consensus        68 -------~~~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          68 -------IYSGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             -------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             -------ccccceeEEEeccccchhHhhHHHHhc
Confidence                   111235799999999999999988773

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.84  E-value=4.7e-06  Score=70.75  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .+++|+|++|||||||+++|+......+.+++++..++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence            378999999999999999999998888889988877653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=4.9e-06  Score=72.82  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      |.+|+++|.||||||||.++|.......+..+.+++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            457999999999999999999987655555554443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.73  E-value=0.00016  Score=65.72  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      .+|+|.|..|+||||+.-.|....-..|.++.+++.||.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            478999999999999999999988888999999999985

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0001  Score=62.96  Aligned_cols=29  Identities=28%  Similarity=0.670  Sum_probs=24.5

Q ss_pred             CcCCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      ...+++..|+++|.||||||||..+++..
T Consensus         9 ~~~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2           9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34556789999999999999999998764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.0022  Score=58.34  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ..+.+|.+.|..|+||||+.-.|.......|+++.++..||+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            346688899999999999999999888788999999999974

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=6.3e-05  Score=67.46  Aligned_cols=88  Identities=7%  Similarity=0.046  Sum_probs=55.9

Q ss_pred             cCCcEEEEEEeCCCCCCchhhhhhHHHHHHHHhhccCCeEEEEecCCCCChHhHHHHHHHHHHHHHHhccccchhhhHHH
Q 014354          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (426)
Q Consensus       196 ~~~d~vl~VVDa~~~~~~~~~~~~~l~~~~~l~~~~~P~IlVlNKiDl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  275 (426)
                      +..|.+++|+.+....-...++..   .+-.....++|.|||+||+|+........+...+.....              
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR---~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~--------------   71 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDR---FLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--------------   71 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHH---HHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH--------------
T ss_pred             cccCEEEEEEECCCCCCCHHHHHH---HHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHh--------------
Confidence            446888999887543222222211   222345678999999999999987654433333221110              


Q ss_pred             HhhhhHhhhhcCCceEEeecccCCCHHHHHHHHH
Q 014354          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (426)
Q Consensus       276 ~~~~~l~~~~~~~~vv~vSA~~g~gv~~l~~~l~  309 (426)
                             .  -..+++.+||.++.|+++|..+|.
T Consensus        72 -------~--~g~~v~~~Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          72 -------N--IGYDVYLTSSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             -------H--HTCCEEECCHHHHTTCTTTGGGGT
T ss_pred             -------h--ccccceeeecCChhHHHHHHHhhc
Confidence                   0  135799999999999999987763

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00015  Score=66.81  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..+|+|+|+.++|||||||.|++..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            45699999999999999999999865

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.43  E-value=0.00035  Score=64.24  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v  109 (426)
                      .+|+|.|..|+||||+.-.|.......|.++.+++.||..
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            4688899999999999999988877788999999999854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=4.4e-05  Score=64.39  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      .|.|+|+||+|||||+.+++......+..+.+....|
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899999999999999999999877777666665554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.17  E-value=7.2e-05  Score=63.08  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.+|+|+|+||||||||.++|....
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.15  E-value=0.00011  Score=63.47  Aligned_cols=28  Identities=39%  Similarity=0.543  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|+|+|+|||||||+.+.|....
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999998765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00016  Score=61.85  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      .+.+|+|.|++|||||||.++|.......+..+.+.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~   56 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccccceec
Confidence            567899999999999999999987765554444443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.12  E-value=0.00012  Score=61.52  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +++.+|+|+|+|||||||+.+.|....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.02  E-value=0.00012  Score=61.10  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++|+|+|+|||||||+.++|....
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.00  E-value=0.00021  Score=59.87  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|.|+|+|||||||+-++|....
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.97  E-value=0.00018  Score=59.09  Aligned_cols=24  Identities=33%  Similarity=0.714  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+|+|+|+||||||||.++|....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            368899999999999999997643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.89  E-value=0.00026  Score=59.67  Aligned_cols=28  Identities=21%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCC
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~   97 (426)
                      .+|+|.|+|||||||++++|.......+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999988764443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.85  E-value=0.00027  Score=60.74  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|+|||||||+...|....
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            56788999999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.82  E-value=0.00028  Score=58.62  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..|+|+|+|||||||+.++|....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.016  Score=49.47  Aligned_cols=38  Identities=18%  Similarity=0.080  Sum_probs=32.8

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           70 VIIIVVGMA-GSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        70 ~~v~iiG~~-gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      .++-|+|.. ||||||+.-.|.......|+++.++..|+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            357888995 99999999999999988999998887664

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00045  Score=59.57  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.++|+|+|+|||||||+...|....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00041  Score=57.86  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+.+++|+|+|||||||+.++|....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.72  E-value=0.00045  Score=57.73  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.+|+|+|+|||||||+.+.|....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999997753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.65  E-value=0.00033  Score=60.10  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|.+|+|+|+|||||||+.+.|....
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35579999999999999999998775

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00045  Score=59.31  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |++|+|+|+|||||||....|....
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.62  E-value=0.00049  Score=58.73  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..|+|+||+|||||||+++|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.60  E-value=0.00058  Score=58.92  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..+|+|+|+|||||||+...|....
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.59  E-value=0.00053  Score=57.12  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+|+|.|+|||||||+.++|....
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999999875

>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00024  Score=56.39  Aligned_cols=39  Identities=10%  Similarity=-0.014  Sum_probs=35.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          324 DKRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       324 ~~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      .|+.+.+|++.|++||++|.++++|+||+....+..|..
T Consensus         3 ~Td~~~~~~i~EiIRE~il~~l~~EiPY~~~v~i~~~~~   41 (113)
T d1egaa2           3 ITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVS   41 (113)
T ss_dssp             CSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEEC
T ss_pred             CcCCCHHHHHHHHHHHHHHHhcccccCeEEEEEEEEEee
Confidence            567888999999999999999999999999999988864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.58  E-value=0.00076  Score=56.89  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      .+|+|.|.|||||||+++.|.......+..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            4678899999999999999988765554433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.56  E-value=0.001  Score=59.62  Aligned_cols=27  Identities=33%  Similarity=0.528  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+..|+|.|+||+|||||..+|.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            455689999999999999999998763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00034  Score=59.63  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ++.+|.|+|+|||||||+-++|.....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            677899999999999999999987653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.51  E-value=0.00058  Score=58.81  Aligned_cols=26  Identities=46%  Similarity=0.555  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|+|+|+|||||||+...|....
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.44  E-value=0.00065  Score=57.41  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+.+.|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00055  Score=57.40  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |+|+|+|+|||||||+-+.|....
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            458889999999999999998765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.43  E-value=0.0044  Score=56.37  Aligned_cols=91  Identities=15%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCccccccccccccchhhhHHHHHHHHHcCCCCCCCcccccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~v~~~~~~t~i~~r~~~~~~~~~~~~~l~~ng~i~~~~~  146 (426)
                      +.+.++.|.|++++|||||+-.++......++.+..++..-+++                .+.++.+|+++..-++..  
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~----------------~~~a~~~Gvd~d~i~~~~--  116 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD----------------PVYARALGVNTDELLVSQ--  116 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----------------HHHHHHTTCCGGGCEEEC--
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCC----------------HHHHHHhCCCchhEEEEc--
Confidence            45669999999999999999999888766667666665543331                124567777765333222  


Q ss_pred             cccccHHHHHHHHHHH--hcCCCEEEEcCCCcc
Q 014354          147 LFTTKFDEVISLIERR--ADHLDYVLVDTPGQI  177 (426)
Q Consensus       147 ~ls~~~~~~~~~~~~~--~~~~~~~liDTPGi~  177 (426)
                        ....++...++..+  ....++++||+-+-.
T Consensus       117 --~~~~E~~~~~~~~l~~~~~~~liIiDSi~al  147 (268)
T d1xp8a1         117 --PDNGEQALEIMELLVRSGAIDVVVVDSVAAL  147 (268)
T ss_dssp             --CSSHHHHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred             --CCCHHHHHHHHHHHHhcCCCcEEEEeccccc
Confidence              33445555555443  335778888887653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.43  E-value=0.011  Score=51.93  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      +++..+.|.|+||+|||+|+..++......+..+..+.
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            35678999999999999999999988766665555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00069  Score=55.41  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+|+|||||||+.+.|....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999998875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.001  Score=58.00  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |++|+|.|++|||||||.+.|....
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999997654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.30  E-value=0.00063  Score=62.75  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      ++.++|+|.|.+||||||+.++|.......+..+.++..|
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            3567999999999999999999887765555566666555

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0016  Score=60.62  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccc--cCCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~--~~~~~~~i~~~d  106 (426)
                      .+.+++|+|.|.+|||||||.+.|.....  ..+..+.++..|
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            45789999999999999999998877643  234555555444

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.27  E-value=0.00093  Score=56.79  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+...|....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0011  Score=57.91  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..++|+||+|||||||+++|+...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4678999999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.25  E-value=0.036  Score=49.52  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc-ccCCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT-QSRNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~-~~~~~~~~i~~~d  106 (426)
                      ..++-.++|.|+||+|||||+..|+... ...+.++.++...
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            3466789999999999999999998653 3456666665544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0052  Score=55.46  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+..+++.|+||+|||+|+++|....
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            34568999999999999999999765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.0011  Score=56.25  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||+.+.|....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.001  Score=57.05  Aligned_cols=22  Identities=32%  Similarity=0.721  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |+|+||+|||||||+++|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0014  Score=56.09  Aligned_cols=24  Identities=42%  Similarity=0.592  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .+.+|+|+|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999998854

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0011  Score=56.11  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +|+|+|+|||||||..+.|....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0012  Score=57.40  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+|.|||||||||+-..|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999886

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.13  E-value=0.0047  Score=59.50  Aligned_cols=40  Identities=28%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccC
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d  106 (426)
                      .+...|+|+|+.||||||++..++.......+.+..+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdP  195 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  195 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccC
Confidence            3456899999999999999999999765555555555543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0014  Score=55.62  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+|+|+|+|||||||+...|....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0059  Score=55.36  Aligned_cols=41  Identities=20%  Similarity=0.248  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      +.+.++.|.|+||+|||||+-.++......++.+.+++..-
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            35679999999999999999998888777777766665543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.0076  Score=54.75  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~  107 (426)
                      .+.+.++.|.|++|+|||||+-.++......++.+..++..-
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            456779999999999999998777776666667666665543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.10  E-value=0.0017  Score=55.59  Aligned_cols=28  Identities=29%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|+|-|..||||||+++.|....
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4577899999999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.09  E-value=0.0017  Score=60.81  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEEecc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~  105 (426)
                      .|+|+|++|||||||+|+|++...+ ..++.++..
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~-~~rivtiEd  201 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIED  201 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEES
T ss_pred             CEEEEeeccccchHHHHHHhhhccc-ccceeeccc
Confidence            4899999999999999999987644 444544443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.0025  Score=56.33  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.+++.||||+|||||.+.|.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999999875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0048  Score=54.66  Aligned_cols=27  Identities=26%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...+.++|.||||+||||++.+|++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.99  E-value=0.0015  Score=54.54  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+|+|||||||+-+.|....
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            38899999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.013  Score=53.11  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      ..++|+|+||+|||+++..|.....
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            3689999999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.94  E-value=0.0069  Score=54.23  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.-|++.|+||+|||+|.++|.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcc
Confidence            3569999999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0025  Score=55.71  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i  102 (426)
                      +++..|+|-|..||||||+++.|.......+..+.+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~   36 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL   36 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            366789999999999999999998887666665543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.90  E-value=0.0023  Score=55.94  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..++.+|.|+|.||||||||.+.|....
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.002  Score=54.90  Aligned_cols=23  Identities=17%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+||+|||||||+++|+...
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999999753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0019  Score=55.47  Aligned_cols=22  Identities=27%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHccc
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      |+|+||+|||||||+++|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.83  E-value=0.0059  Score=54.09  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      .+..++|.|+||+||||+++.|+.....
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4567999999999999999999987644

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.003  Score=55.67  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +.+++.||||+|||||.+.|.....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccC
Confidence            4589999999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.70  E-value=0.0022  Score=53.73  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+|+|||||||+-+.|....
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0031  Score=54.71  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      ++..|+|-|..||||||+++.|.......+...
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~   33 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRD   33 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCe
Confidence            356799999999999999999998765555443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0095  Score=53.57  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.-+++.|+||+|||+|++++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3458999999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.54  E-value=0.0033  Score=54.68  Aligned_cols=26  Identities=31%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..+|+|.|||||||||+...|....
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999999876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.53  E-value=0.0056  Score=53.63  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +.++|.|+||+|||||++.|+....
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4589999999999999999988653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0053  Score=56.34  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++.+|+|.|.+|||||||...|....
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999998886553

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.34  E-value=0.005  Score=52.88  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=26.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccccCCceEEE
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i  102 (426)
                      .|+|-|..||||||+++.|.......|..+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~   33 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999999876555555443

>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: GTPase Era C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.31  E-value=0.0013  Score=52.35  Aligned_cols=38  Identities=11%  Similarity=0.094  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeeccc
Q 014354          325 KRRAEKQRLEEERQKENINKLRKDMEKSKGDTVVLNTG  362 (426)
Q Consensus       325 ~~~~~~~~~~e~~re~~~~~l~~e~~~~~~~~~~~~~~  362 (426)
                      |+++..+++.|++||++|..+++|+||+....+..|..
T Consensus         5 TDq~~~~~i~EiIREkil~~l~~EiPY~~~v~ie~~~e   42 (118)
T d1wf3a2           5 SDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAE   42 (118)
T ss_dssp             BSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEeee
Confidence            56778899999999999999999999999999888763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.27  E-value=0.0046  Score=55.14  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.|.|+||+||||++++++...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.01  Score=51.23  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .++++|+||+|||+++..|.....
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            589999999999999999998653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.99  E-value=0.0072  Score=50.36  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++.+|.+.|..|||||||++.|+...
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            56789999999999999999999876

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0055  Score=51.95  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +++.++.|.|+||+|||+|+..++.+.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            466799999999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.92  E-value=0.0062  Score=53.96  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..|+|.|++|+|||||+++++...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHC
Confidence            468899999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0017  Score=54.81  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++|+|++||||||||.+|.-..
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999997654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.012  Score=51.22  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+++.|+||+||||+++.|.....
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            478999999999999999987643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.0078  Score=52.59  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.|.|+||+|||||++.|+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48899999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.012  Score=51.23  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .+.+.|+||+||||++..|+....
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            478999999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.0085  Score=51.93  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ++|+|+|.+||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            5899999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.64  E-value=0.0074  Score=55.86  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +..++++||||+|||.|.++|.+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc
Confidence            3457899999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.0074  Score=54.99  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ...+|+|++||||||+|.+|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999999954

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.015  Score=52.19  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEeccCcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~~d~~  108 (426)
                      ....+|++.|..|+||||+.-.|.......|+++.+++.||.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            355788899999999999988888877778899999999975

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.47  E-value=0.01  Score=51.16  Aligned_cols=23  Identities=35%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ..+|+|+|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998853

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.38  E-value=0.032  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++|||+||||||+++..|....
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999998877653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.31  E-value=0.012  Score=52.62  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +.-|++.|+||+|||+|+++|.+..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            3458999999999999999999865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.30  E-value=0.04  Score=51.02  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .++++.|+||+|||.|.++|.+..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHh
Confidence            345667999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.0093  Score=52.58  Aligned_cols=25  Identities=24%  Similarity=0.269  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      +.++|.|+||+||||++.+++....
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3489999999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.012  Score=51.25  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +++.++.|.|+||+|||||...++..
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            46678999999999999999998765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.011  Score=51.65  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ...|+|-|.-||||||+++.|....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.014  Score=55.16  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLV   90 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~   90 (426)
                      +...+|+|++||||||+|.+|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999985

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.015  Score=51.63  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      ...++|.|++.+||||+|+.+.-.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            467999999999999999987644

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.85  E-value=0.029  Score=50.74  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      ...+|+|.|++|.|||||..++...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999999765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.72  E-value=0.017  Score=52.17  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+..|++.|+||+|||+|++++.+..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34568999999999999999999876

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.50  E-value=0.018  Score=50.45  Aligned_cols=28  Identities=36%  Similarity=0.427  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      -+++.++.|.|+||+|||||.-.++.+.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3466799999999999999999887654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.42  E-value=0.054  Score=47.48  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +++|.|++.+||||+|+.+.-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            6899999999999999987644

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.38  E-value=0.022  Score=53.79  Aligned_cols=27  Identities=30%  Similarity=0.239  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++...+++.||||+|||+|.++|++..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999999876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.024  Score=49.53  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      |..|+|=|.-||||||+++.|......
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            568999999999999999999987533

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.08  E-value=0.027  Score=48.73  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      .+++.++.|.|+||+|||+|+..++.....
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            346779999999999999999999876543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.91  E-value=0.035  Score=48.14  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ++..|+|-|.-||||||+++.|......
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6778999999999999999999876543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.35  Score=41.16  Aligned_cols=26  Identities=12%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ..+++.|++|+||||+...++....+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhccc
Confidence            45899999999999999999987654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.036  Score=48.24  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+++.++.|.|+||+|||+|.-+++...
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577899999999999999999998643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.54  E-value=0.056  Score=42.54  Aligned_cols=41  Identities=5%  Similarity=-0.002  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc--CCceEEEeccC
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLD  106 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~--~~~~~~i~~~d  106 (426)
                      .++++.|.+.|.+|+|||||-++|......  .++.+.+...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            357899999999999999999999877655  34555555433

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.075  Score=48.89  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +...++++||+|+|||.|...|....
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhc
Confidence            44578999999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.36  E-value=0.031  Score=47.98  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +++.++.|.|+||+|||+|+-.++..
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            46778999999999999998776643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.039  Score=52.58  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcccccCCceEEEe
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~  103 (426)
                      ..+.|+|.+|+|||++++.|+......+..+.|+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            4589999999999999999888777666665554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.93  E-value=0.046  Score=47.76  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .+|+|+|..||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.85  E-value=0.048  Score=47.32  Aligned_cols=28  Identities=29%  Similarity=0.515  Sum_probs=23.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcccccCCce
Q 014354           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIR   99 (426)
Q Consensus        72 v~iiG~~gaGKSTLln~L~~~~~~~~~~   99 (426)
                      +.|.|++|+|||-|++++.......+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~   66 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYR   66 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccc
Confidence            6799999999999999999886554433

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.80  E-value=0.024  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .|+|+|+||+|||||+++|.+-.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            48999999999999999998643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.99  E-value=0.073  Score=44.78  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .+.-|+|+|++|+|||||.-.|...
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4556999999999999999988865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.78  E-value=0.058  Score=46.41  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +--.+++.|+||+|||+|.++|++..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            34579999999999999999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.69  E-value=0.077  Score=44.69  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      .+.-|+|.|++|+|||||.-.|...
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4556899999999999999998764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.067  Score=47.43  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      +.+++|+|++|+|||||+-.|+..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            568899999999999999888764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.11  Score=48.84  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      ..+++|.|+||+||||++.+++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            45899999999999999866543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.19  E-value=0.061  Score=52.04  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHccc
Q 014354           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        70 ~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..|+++||+|||||-|.++|.+..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.18  E-value=0.089  Score=43.93  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      .+.-|+|.|++|+|||||.-.|+..-
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            45679999999999999998887663

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.89  E-value=0.087  Score=47.18  Aligned_cols=18  Identities=39%  Similarity=0.676  Sum_probs=14.2

Q ss_pred             EEEEcCCCCCHHHHH-HHH
Q 014354           72 IIVVGMAGSGKTTFM-HRL   89 (426)
Q Consensus        72 v~iiG~~gaGKSTLl-n~L   89 (426)
                      ++|+|.||+||||.+ +++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            678899999999754 443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.17  Score=44.12  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcccc
Q 014354           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (426)
Q Consensus        71 ~v~iiG~~gaGKSTLln~L~~~~~   94 (426)
                      .++|.|+||+||||+...+.....
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            578999999999999999887653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.73  E-value=0.25  Score=45.23  Aligned_cols=30  Identities=20%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHcccccCC
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~~~~~   97 (426)
                      +..++.++|++|+|||.|.+.|....+...
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~   81 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTE   81 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCC
Confidence            344788999999999999999998765433

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.73  E-value=0.1  Score=48.45  Aligned_cols=32  Identities=28%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceE
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~  100 (426)
                      ..+|+|=|.-||||||+++.|.......+..+
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v   36 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNRI   36 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence            45799999999999999999998765554443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.07  Score=48.50  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHccccc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~~~~   95 (426)
                      ..++.+++|+|.+|+|||+|+..|......
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            457789999999999999999999986543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.38  E-value=0.22  Score=46.07  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCC
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~   97 (426)
                      ..+|.|=|.-|+||||+++.|.......+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCC
Confidence            46899999999999999999998765443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.05  E-value=0.094  Score=47.47  Aligned_cols=18  Identities=44%  Similarity=0.870  Sum_probs=14.2

Q ss_pred             EEEEcCCCCCHHHHH-HHH
Q 014354           72 IIVVGMAGSGKTTFM-HRL   89 (426)
Q Consensus        72 v~iiG~~gaGKSTLl-n~L   89 (426)
                      ++|.|.||+||||.+ +++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHH
Confidence            678899999999654 443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.50  E-value=0.2  Score=44.87  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      +--.+.+.|++++|||+|++.|....
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            44578999999999999999999864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.19  E-value=0.17  Score=39.19  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHH-HHHHHcccccCCceEEE
Q 014354           67 RKPVIIIVVGMAGSGKTTF-MHRLVCHTQSRNIRGYV  102 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTL-ln~L~~~~~~~~~~~~i  102 (426)
                      +++..++|.+++|+|||.. +..+.......+..+.+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli   41 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV   41 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee
Confidence            4567889999999999943 34555544444444433

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=85.45  E-value=0.22  Score=46.69  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ++..++++||+|||||-|.++|....
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc
Confidence            45569999999999999999998653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.97  E-value=0.35  Score=43.37  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHcc
Q 014354           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (426)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLln~L~~~   92 (426)
                      ..++.+++|+|.+|+|||+|+..++.+
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            346778999999999999999998766

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=84.06  E-value=0.2  Score=46.31  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHccc
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~   93 (426)
                      ..+|+|=|.-||||||+++.|....
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHh
Confidence            3569999999999999999998654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=0.68  Score=36.58  Aligned_cols=36  Identities=28%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        69 ~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      +..-+++|+=.|||||-|-+.+......+..+.+++
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            456789999999999988888877767777766654

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.37  E-value=0.9  Score=36.26  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHcccccCCceEEEec
Q 014354           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (426)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLln~L~~~~~~~~~~~~i~~  104 (426)
                      ..+..-+|+|+=.|||||-|-+.+......+.++.+++
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            35677889999999999988888877767777776654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.15  E-value=0.55  Score=36.53  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=18.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHc
Q 014354           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (426)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLln~L~~   91 (426)
                      .-.+.+|.++.|+|||+++-.++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            345678899999999998866554