Citrus Sinensis ID: 014356


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTNPINQLWHANGKCPEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRSADPDLTNESGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP
ccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEEEccccccccccccEEHHHHccccccccccEEEccccccccccccccEEEEEEEccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccccEEEEEccccEEEEEcHHHccccccccEEEEEccEEEccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccEEEEcccccccccEEEEEccccccccc
cccccccccHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEcccccccccccccccccEEccccccccccccccccccccccccccEEEEEccccccccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEEccccccccccccHEEEEEEcccccccccEEEEEcEEcHHHccccccEEEEEEEcccccccccEccccccEEEEcccEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEcccEEEEcccHHHHHHHHccccEEEEccEEEcccccccccccccccccccccccccEEEEEEEEEEccccccccccHcEEEccccccEEEEccccccccEEEEEcccccccccc
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAarlgsesrqKLEVQKHLNrlnkspvksikspdgdiidcvhishqpafdhpylkdhkiqmrpnyhpeglfddnkasakpkertnpinqlwhangkcpegtipvrrtkeddvLRASsvkrygkkkhrsipqprsadpdltnesghqHAIAYVEgdkyygakatinvwepkiqqsnefSLSQLWILggsfgqdlnsieagwqvspdlygdnntrLFTYWTsdayqatgCYNLLCSGFIQINseiamgasispvssyrnsqydisiliwkdpteghwwmqfgndyvlgywpSFLFSYLADSASMIewggevvnseadgrhtstqmgsgrfpeegfgkasyfrnvqvvdgsnnlkapkgigtfteqsncydvqtgsngdwghyfyfggpgknpncp
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQkhlnrlnkspvksikspdGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTnpinqlwhangkcpegtipvrrtkeddvlrassvkrygkkkhrsipqprsadpdltnesGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFggpgknpncp
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTNPINQLWHANGKCPEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRSADPDLTNESGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP
**CVCGS*AQANMANRGGLLMVFWLWCSVISIACAARL*****************************GDIIDCVHISHQPAFDHPYLKDHKI******************************LWHA*****************************************************HAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVV***********************GKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFG*********
********AQANMANRGGLLMVFWLWCSVISIAC*******************RLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPY************************************LWHANGKCPEGTIPVRRT**********************************ESGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKN****
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTNPINQLWHANGKCPEGTIPVRRTKEDDVLRASSVK************************GHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGL*************TNPINQLWHANGKCPEGTIPVRRTKEDDVLRASSVKRYGKK*****************ESGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFCVCGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTNPINQLWHANGKCPEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRSADPDLTNESGHQHAIAYVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
224073138424 predicted protein [Populus trichocarpa] 0.985 0.990 0.869 0.0
224052871401 predicted protein [Populus trichocarpa] 0.934 0.992 0.902 0.0
147798997422 hypothetical protein VITISV_036996 [Viti 0.985 0.995 0.825 0.0
225435772422 PREDICTED: uncharacterized protein LOC10 0.985 0.995 0.825 0.0
297746485411 unnamed protein product [Vitis vinifera] 0.964 1.0 0.842 0.0
449515794420 PREDICTED: uncharacterized protein LOC10 0.929 0.942 0.889 0.0
449463849420 PREDICTED: uncharacterized protein LOC10 0.929 0.942 0.889 0.0
356525331418 PREDICTED: uncharacterized protein LOC10 0.953 0.971 0.862 0.0
255564848412 conserved hypothetical protein [Ricinus 0.948 0.980 0.872 0.0
356512584418 PREDICTED: uncharacterized protein LOC10 0.953 0.971 0.862 0.0
>gi|224073138|ref|XP_002303990.1| predicted protein [Populus trichocarpa] gi|222841422|gb|EEE78969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/423 (86%), Positives = 389/423 (91%), Gaps = 3/423 (0%)

Query: 5   CGSSAQANMANRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIK 64
           CG    A+ +    L++VF L   +ISI CAARL S SRQKLEVQKHLNRLNK  VKSI+
Sbjct: 4   CGCGGGAHFSRSIVLVLVFCL-LGLISITCAARL-SVSRQKLEVQKHLNRLNKPAVKSIE 61

Query: 65  SPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNYHPEG-LFDDNKASAKPKERTNPINQL 123
           SPDGDIIDCVH+SHQPAFDHPYLKDHKIQMRP+YHPEG +FDD+K S + KER NPI QL
Sbjct: 62  SPDGDIIDCVHMSHQPAFDHPYLKDHKIQMRPSYHPEGRVFDDSKVSTESKERKNPITQL 121

Query: 124 WHANGKCPEGTIPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRSADPDLTNESGHQHAIA 183
           WH N KCPEGTIP+RRTKEDDVLRASSVKRYG+KKHR+IPQPRSADPDL NESGHQHAIA
Sbjct: 122 WHVNDKCPEGTIPIRRTKEDDVLRASSVKRYGRKKHRAIPQPRSADPDLINESGHQHAIA 181

Query: 184 YVEGDKYYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDN 243
           YVEGDKYYGAKATINVWEPKIQQ NEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDN
Sbjct: 182 YVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDN 241

Query: 244 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDP 303
           NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVS YRNSQYDISIL+WKDP
Sbjct: 242 NTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGYRNSQYDISILVWKDP 301

Query: 304 TEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPE 363
            EGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSE DGRHTSTQMGSGRFPE
Sbjct: 302 KEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEPDGRHTSTQMGSGRFPE 361

Query: 364 EGFGKASYFRNVQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNP 423
           EGFGKASYFRN+QVVD +NNLKAPKGIGTFTE+SNCYDVQTG+NGDWG YFY+GGPG+N 
Sbjct: 362 EGFGKASYFRNIQVVDSTNNLKAPKGIGTFTEKSNCYDVQTGNNGDWGRYFYYGGPGRNE 421

Query: 424 NCP 426
           NCP
Sbjct: 422 NCP 424




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052871|ref|XP_002297622.1| predicted protein [Populus trichocarpa] gi|222844880|gb|EEE82427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147798997|emb|CAN72570.1| hypothetical protein VITISV_036996 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435772|ref|XP_002285729.1| PREDICTED: uncharacterized protein LOC100267227 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297746485|emb|CBI16541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449515794|ref|XP_004164933.1| PREDICTED: uncharacterized protein LOC101228278 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463849|ref|XP_004149643.1| PREDICTED: uncharacterized protein LOC101217856 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356525331|ref|XP_003531278.1| PREDICTED: uncharacterized protein LOC100776799 [Glycine max] Back     alignment and taxonomy information
>gi|255564848|ref|XP_002523418.1| conserved hypothetical protein [Ricinus communis] gi|223537368|gb|EEF38997.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356512584|ref|XP_003524998.1| PREDICTED: uncharacterized protein LOC100809342 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2092870419 AT3G13510 [Arabidopsis thalian 0.957 0.973 0.822 7e-196
TAIR|locus:2035666422 AT1G55360 [Arabidopsis thalian 0.955 0.964 0.836 1.3e-194
TAIR|locus:2167121420 AT5G56530 "AT5G56530" [Arabido 0.953 0.966 0.808 2e-189
TAIR|locus:2050487445 AT2G44210 [Arabidopsis thalian 0.852 0.815 0.669 1.9e-151
TAIR|locus:2146258430 AT5G18460 [Arabidopsis thalian 0.880 0.872 0.595 1.4e-128
TAIR|locus:2019933467 AT1G10750 [Arabidopsis thalian 0.856 0.781 0.593 5.9e-128
TAIR|locus:2170091420 AT5G50150 "AT5G50150" [Arabido 0.861 0.873 0.553 6.7e-120
TAIR|locus:2026815465 AT1G70550 [Arabidopsis thalian 0.866 0.793 0.551 2.9e-119
TAIR|locus:2028025409 AT1G23340 "AT1G23340" [Arabido 0.859 0.894 0.550 5.4e-118
TAIR|locus:2050528403 AT2G44220 [Arabidopsis thalian 0.873 0.923 0.510 2.1e-116
TAIR|locus:2092870 AT3G13510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1897 (672.8 bits), Expect = 7.0e-196, P = 7.0e-196
 Identities = 339/412 (82%), Positives = 373/412 (90%)

Query:    15 NRGGLLMVFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKSPVKSIKSPDGDIIDCV 74
             NRG   +  W+   ++S++CAA     SRQK EV+KHLNRLNK PVK+I+SPDGDIIDC+
Sbjct:    12 NRG-FFVCLWV---MLSLSCAAASYGSSRQKFEVKKHLNRLNKPPVKTIQSPDGDIIDCI 67

Query:    75 HISHQPAFDHPYLKDHKIQMRPNYHPEGLFDDNKASAKPKERTNPINQLWHANGKCPEGT 134
              IS QPAFDHP+LKDHKIQMRP+YHPEGLFDDNK SA+PK +   I QLWH  GKC EGT
Sbjct:    68 PISKQPAFDHPFLKDHKIQMRPSYHPEGLFDDNKVSAEPKGKETHIPQLWHRYGKCTEGT 127

Query:   135 IPVRRTKEDDVLRASSVKRYGKKKHRSIPQPRSADPDLTNESGHQHAIAYVEGDKYYGAK 194
             IP+RRT+EDDVLRASSVKRYGKKKHRS+P P+SA+PDL N++GHQHAIAYVEGDKYYGAK
Sbjct:   128 IPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQNGHQHAIAYVEGDKYYGAK 187

Query:   195 ATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSD 254
             AT+NVWEPKIQ +NEFSLSQ+W+LGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSD
Sbjct:   188 ATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSD 247

Query:   255 AYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGN 314
             AYQATGCYNLLCSGFIQINS+IAMGASISPVS YRNSQYDISILIWKDP EGHWWMQFGN
Sbjct:   248 AYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILIWKDPKEGHWWMQFGN 307

Query:   315 DYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKASYFRN 374
              YVLGYWPSFLFSYL +SASMIEWGGEVVNS+++G HT TQMGSG FPEEGF KASYFRN
Sbjct:   308 GYVLGYWPSFLFSYLTESASMIEWGGEVVNSQSEGHHTWTQMGSGHFPEEGFSKASYFRN 367

Query:   375 VQVVDGSNNLKAPKGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGPGKNPNCP 426
             +QVVDGSNNLKAPKG+GTFTE+SNCYDVQTGSN DWGHYFY+GGPGKN NCP
Sbjct:   368 IQVVDGSNNLKAPKGLGTFTEKSNCYDVQTGSNDDWGHYFYYGGPGKNKNCP 419




GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009813 "flavonoid biosynthetic process" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010224 "response to UV-B" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
TAIR|locus:2035666 AT1G55360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167121 AT5G56530 "AT5G56530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050487 AT2G44210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146258 AT5G18460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019933 AT1G10750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170091 AT5G50150 "AT5G50150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026815 AT1G70550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028025 AT1G23340 "AT1G23340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050528 AT2G44220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
pfam03080230 pfam03080, DUF239, Domain of unknown function (DUF 1e-126
pfam14365117 pfam14365, DUF4409, Domain of unknown function (DU 7e-66
>gnl|CDD|217358 pfam03080, DUF239, Domain of unknown function (DUF239) Back     alignment and domain information
 Score =  363 bits (934), Expect = e-126
 Identities = 142/233 (60%), Positives = 178/233 (76%), Gaps = 6/233 (2%)

Query: 190 YYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFT 249
           YYGA+ATINV+ PK+Q  N+FSLSQ+WI+ G    DLNSI+AGWQV+P LYGDN TRLFT
Sbjct: 1   YYGAQATINVYNPKVQNPNQFSLSQIWIVNGPENGDLNSIQAGWQVNPSLYGDNRTRLFT 60

Query: 250 YWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWW 309
           YWT D Y  TGCYNLLC GF+Q++S+IA+G +ISPVS Y   QYDI++LIWKDP  G+WW
Sbjct: 61  YWT-DGYNKTGCYNLLCPGFVQVSSKIALGGAISPVSVYGGKQYDITLLIWKDPKTGNWW 119

Query: 310 MQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADGRHTSTQMGSGRFPEEGFGKA 369
           + +GN+ V+GYWPS LF++L+  A+M+EWGGEV +    G H S  MGSG FPEEGFGKA
Sbjct: 120 LTYGNNTVIGYWPSSLFTHLSSGATMVEWGGEVYSP--PGGHPSPPMGSGHFPEEGFGKA 177

Query: 370 SYFRNVQVVDGSNNLKAPK--GIGTFTEQSNCYDVQTGS-NGDWGHYFYFGGP 419
           +YFRN++VVD  N L  P    + TF +  NCY+V+ G   G+WGH FY+GGP
Sbjct: 178 AYFRNIKVVDEDNKLVKPDEDKLETFADSPNCYNVKDGGYTGEWGHAFYYGGP 230


This is a family of plant and bacterial proteins, a small number of which are putative carboxy-terminal peptidases. Length = 230

>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
PF03080229 DUF239: Domain of unknown function (DUF239); Inter 100.0
PF14365117 DUF4409: Domain of unknown function (DUF4409) 100.0
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 83.43
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT) Back     alignment and domain information
Probab=100.00  E-value=5.1e-84  Score=620.29  Aligned_cols=227  Identities=59%  Similarity=1.192  Sum_probs=216.9

Q ss_pred             eeeeEEEEEeecccccCCCccceeeeeeecCCCCCCCcEEEEeceecCCCCCCCCeEEEEEEecCCcccccccccCCCcc
Q 014356          190 YYGAKATINVWEPKIQQSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF  269 (426)
Q Consensus       190 ~~Ga~a~inVw~P~V~~~~qfS~sqiwi~~g~~~~~~nsIeaGW~V~P~lYgD~~~rlf~yWt~d~y~~tGCyNl~CpGF  269 (426)
                      |||++|+||||+|+|+.++|||++||||.+|..++.+|+|||||+|+|+||||++||||+|||+|+|++|||||++||||
T Consensus         1 y~G~~a~i~v~~p~v~~~~q~S~~~i~i~~g~~~~~~~~i~~GW~V~P~lygd~~~~lf~~wt~d~~~~tgCyN~~CpGF   80 (229)
T PF03080_consen    1 YYGARATISVWNPKVQQPDQFSLSQIWISNGSDDDSLNSIEAGWQVYPSLYGDSRTRLFVYWTADGYQKTGCYNLDCPGF   80 (229)
T ss_pred             CeeeEEEEECcCCccCCccceeheeEEEEecCCCCCCcEEEEeeeccccccCCCceEEEEEEEccCCCCcceeCCCCCcE
Confidence            79999999999999997679999999999998557899999999999999999999999999999999999999999999


Q ss_pred             EEecCccccCcccccccccCCceeEEEEEEecCCCCCCeEEEeCCCeeeeeechhhhhhhccCccEEEEceEEEecCCCC
Q 014356          270 IQINSEIAMGASISPVSSYRNSQYDISILIWKDPTEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEADG  349 (426)
Q Consensus       270 VQvs~~i~lG~~i~pvS~~~G~q~~i~i~I~kD~~tGnWWL~~~~~~~IGYWP~sLF~~l~~~A~~V~wGGeV~~~~~~g  349 (426)
                      ||||++|+||++|+|+|+++|+|++|+|+|+||+.+|||||+++ ++.|||||++||+.|+++|+.|+|||||++++  +
T Consensus        81 Vq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~-~~~IGYwP~sLF~~l~~~A~~v~wGGeV~~~~--~  157 (229)
T PF03080_consen   81 VQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYG-GEPIGYWPKSLFTSLADGATEVEWGGEVYSPP--G  157 (229)
T ss_pred             EEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEe-cceeeeehHHhhhhhhcCceEEEEEEEEeCCC--C
Confidence            99999999999999999999999999999999999999999998 68999999999999999999999999999874  4


Q ss_pred             CCCCCCCCCCCCCCCCCCceeEEeecEEEcCCCCccCC--CCccccccCCCceeeecCCCCCccceEEEcCC
Q 014356          350 RHTSTQMGSGRFPEEGFGKASYFRNVQVVDGSNNLKAP--KGIGTFTEQSNCYDVQTGSNGDWGHYFYFGGP  419 (426)
Q Consensus       350 ~~tsppMGSG~fp~~g~~kAAy~~ni~ivd~~~~~~~~--~~~~~~~d~p~CY~v~~~~~~~~g~~f~yGGP  419 (426)
                      .|++|||||||||++|+++|||||||+++|.+++..++  ..+++++|+|+||++......+||.+||||||
T Consensus       158 ~~~sppMGSG~fp~~g~~~aAy~~~i~~~d~~~~~~~~~~~~~~~~~~~~~CY~~~~~~~~~~g~~f~yGGP  229 (229)
T PF03080_consen  158 RHTSPPMGSGHFPSEGFGKAAYFRNIQVVDSNGQFVDPNDDLLEVFADNPSCYDVSYIGDGDWGYYFFYGGP  229 (229)
T ss_pred             CCCCCCccCCcCCCCCCCccEEEEEEEEEcCCCCCcCCcccceeEccCCCCceeEeeccCCCcccEEEeeCC
Confidence            68999999999999999999999999999999988877  35778999999999998888889999999999



However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.

>PF14365 DUF4409: Domain of unknown function (DUF4409) Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 57/387 (14%), Positives = 102/387 (26%), Gaps = 130/387 (33%)

Query: 5   CGSSAQANMANRGGLLM------VFWLWCSVISIACAARLGSESRQKLEVQKHLNRLNKS 58
            G +  A        +       +FWL            L + +  +  V + L +L   
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWL-----------NLKNCNSPE-TVLEMLQKLLY- 207

Query: 59  PVKSIKSPDGDIIDCVHISHQPAFDHPYLKDHKIQMRPNY------HPEGLFD-DNKASA 111
                       ID    S      +  L+ H IQ           +   L    N  +A
Sbjct: 208 -----------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 112 KPKERTNPINQLWHA-NGKCPEGTIPVRRTKED-DVLRASSVKRYGKKKHRSIPQPRSA- 168
           K           W+A N  C    +   R K+  D L A++        H     P    
Sbjct: 257 K----------AWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 169 ----------DPDLTNE--SGHQHAIA-----------------YVEGDKYYGA-KATIN 198
                       DL  E  + +   ++                 +V  DK     ++++N
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 199 VWEPKIQQSN--EFS------------LSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNN 244
           V EP   +      S            LS +W        D+  +         +     
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 245 TRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSSYR-NSQYDISILIWKDP 303
               +             ++     +++ +E A+  SI  V  Y     +D       D 
Sbjct: 423 ESTISI-----------PSIYLELKVKLENEYALHRSI--VDHYNIPKTFD-----SDD- 463

Query: 304 TEGHWWMQFGNDYVLGYWPSFLFSYLA 330
                       Y+  Y+    +S++ 
Sbjct: 464 --------LIPPYLDQYF----YSHIG 478


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00