Citrus Sinensis ID: 014360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEcccEEEccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccHHccccccccccccccccccccccccccccHHccccccccccccccccccccccccHccccccccccccccccccccccccccccEcccccccccHHHHHcccccEEcccccccccccccHHHcccccHHHHHHcccccccccccccHcccccccccccccccccccccccccEEEcccEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgeshnhattssrlgirntggeivevqgghivrstgrkdrhskvctakgprdrrvrlSAHTAIQFYdvqdrlgydrpsKAVDWLIKKAKAAIDElaelppwnpgtvtntrastaksrnahhqqseaneernfqypgssndvqnlpmvetpnqnqsssflppaldsdsiADTIKsffpmgastdttassiqfqnyspdllsrtttshSQDLRLSLqsfqepnsillqhrqqphphhhahshshqhqqqNEQVQVLFsgttplggydtaSAAASAWSESAEMSRFQRMVAWnsgggaaddsagnasgggfvfnsqqpppvqplfgqnqlfhsqrgplqssntpsvrawidqpigltndhrqqhhhhlhhhqilqqpavhqsvisgigfaspvgefsgfripariqgedeehdhgihnrpsstssdsrh
Flexible Loop (DISEMBL)
mgeshnhattssrlgirntggeivevqgghivrstgrkdrhskvctakgprdrrvrlsahtaiqfydvqdrlgydrPSKAVDWLIKKAKAAIDElaelppwnpgtvTNTRASTAKSRNAHHQqseaneernfqyPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGedeehdhgihnrpsstssdsrh
Low Complexity Region (SEG)
MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLqhrqqphphhhahshshqhqqqneqvqVLFSGTTPLGGYDTasaaasawsesaemsRFQRMVAWnsgggaaddsagnasgggFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDhrqqhhhhlhhhqilqqPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH
Disordered region (IsUnstruct)
*********************EIVEVQGGHIV*********************RVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPW**********************************************************************************************************************************************************************************************************************************************************************************VHQSVISGIGFASPVGEFSGFRIP***************************
Disordered Region (DISOPRED)
********************************************CTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDE*********************************************************************************************************************************************************************************************************************FVF************************************I***************************************ASPVGEFSGFRIPARI************************
Disordered Region (DISEMBL)
*************LGIRNTGGEIVEVQGGHIVR********************RVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTN*********************RNFQYPGSSNDVQNLPMVET*********LPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQ***********************QVQVLFSGTTPLGGYDT**************SRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFGQNQLFHSQ**********SVRAWIDQPIGLTND*******************VHQSVISGIGFASPVGEFSGFRIPARIQGEDE*******************
Disordered Region (DISPRO)
*********************EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAEL****************************************************************LDSDSIADTIKSFFPMGA************NYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQ*********************************GYDTASAAASAWSESAEMSRFQRMVAWNSG*********NASGGGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQ***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q8LPR5	420	Transcription factor TCP4	yes	no	0.875	0.888	0.527	4e-88
Q9MAH8	391	Transcription factor TCP3	no	no	0.838	0.913	0.5	2e-82
A2WM14	582	Transcription factor PCF5	N/A	no	0.833	0.609	0.443	4e-67
Q8LT07	458	Transcription factor PCF5	yes	no	0.830	0.772	0.440	5e-67
O82277	361	Transcription factor TCP1	no	no	0.413	0.487	0.495	7e-41
Q8LT05	457	Transcription factor PCF7	no	no	0.645	0.601	0.390	6e-37
A2WV68	457	Transcription factor PCF7	N/A	no	0.643	0.599	0.391	6e-37
Q93V43	365	Transcription factor TCP2	no	no	0.161	0.189	0.694	5e-23
Q10CE8	357	Transcription factor PCF6	no	no	0.161	0.193	0.724	1e-22
A2XMN1	358	Transcription factor PCF6	N/A	no	0.157	0.187	0.731	4e-22

>sp|Q8LPR5|TCP4_ARATH Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1

 Score =  325 bits (833), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 224/425 (52%), Positives = 261/425 (61%), Gaps = 52/425 (12%)

Query: 21  GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 80
           GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLG+DRPSKA
Sbjct: 29  GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKA 88

Query: 81  VDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSND 140
           VDWLIKKAK +IDELAELPPWNP       A+ AK R    +   +      Q       
Sbjct: 89  VDWLIKKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQ 148

Query: 141 VQ-----NLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFP-MGASTDTTASSIQFQNY 194
           +Q     N    E P+ N+ SSFLPP++DSDSIADTIKSFFP +G+ST+  ++     NY
Sbjct: 149 LQFGVGFNGGGAEHPSNNE-SSFLPPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLMHNY 207

Query: 195 ----SPDLLSRTTTSHSQDLRLSLQSFQE-PNSILLQHRQQPHPHHHAHSHSHQHQQQNE 249
                PDLLSR T S +QDLRLSLQSF + P S+L             H   H H   + 
Sbjct: 208 HHQHPPDLLSR-TNSQNQDLRLSLQSFPDGPPSLL-------------HHQHHHHTSASA 253

Query: 250 QVQVLFSGTTPLGGYDTASAAASAWS-ESAEMSRFQRMVAWNSGGGAADDSAGNASGGGF 308
               LF G +   G+DT     S+W  +S+E  R QR+VAWNSGGG      GN  G  F
Sbjct: 254 SEPTLFYGQSNPLGFDT-----SSWEQQSSEFGRIQRLVAWNSGGGGGATDTGNGGGFLF 308

Query: 309 VFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLH-- 366
              +      QP+ GQ+Q  +SQRGPLQSS +P +RAW D            HHHH    
Sbjct: 309 APPTPSTTSFQPVLGQSQQLYSQRGPLQSSYSPMIRAWFD-----------PHHHHQSIS 357

Query: 367 ----HHQILQQPAVHQSVISGIGFASPVGEF-SGFRIPARIQGEDEEHDHGIHNRPSSTS 421
               +H     P VHQS I GIGFAS  GEF SGFRIPAR QG++EE   G+ ++PSS S
Sbjct: 358 TDDLNHHHHLPPPVHQSAIPGIGFAS--GEFSSGFRIPARFQGQEEEQHDGLTHKPSSAS 415

Query: 422 SDSRH 426
           S SRH
Sbjct: 416 SISRH 420

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Required during early steps of embryogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3 OS=Arabidopsis thaliana GN=TCP3 PE=2 SV=1

 Score =  306 bits (785), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 204/408 (50%), Positives = 245/408 (60%), Gaps = 51/408 (12%)

Query: 21  GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 80
           GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSA TAIQFYDVQDRLG+DRPSKA
Sbjct: 33  GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKA 92

Query: 81  VDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSND 140
           VDWLI KAK+AID+LA+LPPWNP       A T +   A    ++  + +    P     
Sbjct: 93  VDWLITKAKSAIDDLAQLPPWNP-------ADTLRQHAAAAANAKPRKTKTLISPPPPQP 145

Query: 141 VQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLS 200
            +         ++  SSFLP ++DSDSIADTIKSFFP+ ++          Q+Y     S
Sbjct: 146 EETEHHRIGEEEDNESSFLPASMDSDSIADTIKSFFPVASTQ---------QSYHHQPPS 196

Query: 201 RTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSG-TT 259
           R  T +   LRLSLQSFQ            P P              N+    LFSG + 
Sbjct: 197 RGNTQNQDLLRLSLQSFQN---------GPPFP--------------NQTEPALFSGQSN 233

Query: 260 PLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQ 319
               +D+++A+     +S E  + QR+V+WN+ G A  +SAG  S GGFVF S  P  + 
Sbjct: 234 NQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAA--ESAG--STGGFVFAS--PSSLH 287

Query: 320 PLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHL-HHHQILQQPAVHQ 378
           P++ Q+QL  SQRGPLQS NTP +RAW D      +  +      L HHH     P +HQ
Sbjct: 288 PVYSQSQLL-SQRGPLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQ 346

Query: 379 SVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
           S I GI FAS  GEFSGFRIPAR QGE EE  HG  N+PSS SSDSRH
Sbjct: 347 SAIPGIAFAS-SGEFSGFRIPARFQGEQEE--HGGDNKPSSASSDSRH 391

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|A2WM14|PCF5_ORYSI Transcription factor PCF5 OS=Oryza sativa subsp. indica GN=PCF5 PE=4 SV=1

 Score =  255 bits (652), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 221/410 (53%), Gaps = 55/410 (13%)

Query: 9   TTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDV 68
           T  SR G    GGEIV VQGGHIVRSTGRKDRHSKVCTA+GPRDRRVRLSAHTAIQFYDV
Sbjct: 185 TPRSRGGGGGGGGEIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDV 244

Query: 69  QDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNP-GTVTNTRASTAKSRNAHHQQSEAN 127
           QDRLGYDRPSKAVDWLIK AK AID+L  LP W P         + A   ++ H  S  N
Sbjct: 245 QDRLGYDRPSKAVDWLIKNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAEN 304

Query: 128 EERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTD---- 183
            +   Q    +  V +         +  +SFLPP+LDSD+IADTIKSFFPMG +      
Sbjct: 305 SDDQAQ----AITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEAS 360

Query: 184 -----TTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAH 238
                  +S++ FQ+Y+PDLLSR T S SQ+LRLSLQS  +P             H    
Sbjct: 361 SSTTAAQSSAMGFQSYTPDLLSR-TGSQSQELRLSLQSLPDPM----------FHHQQHR 409

Query: 239 SHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADD 298
                        Q LFSG       + +    + W+ + + ++ QRM+ WN        
Sbjct: 410 HGGGGGGGNGTTQQALFSGAA-----NYSFGGGAMWA-TEQQAQNQRMLPWNV------P 457

Query: 299 SAGNASGGGFVFN-----SQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGL 353
             G   G  ++FN     +        L G    F  QRGPLQSSN PS R W   P  +
Sbjct: 458 DPGGGGGAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQRGPLQSSNQPSERGW---PETV 514

Query: 354 TNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQ 403
             D++  HH          Q  +  SV + IGFA+P   FSGFR+PARIQ
Sbjct: 515 EADNQMSHH----------QGGLSPSVSAAIGFAAPGIGFSGFRLPARIQ 554

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LT07|PCF5_ORYSJ Transcription factor PCF5 OS=Oryza sativa subsp. japonica GN=PCF5 PE=2 SV=1

 Score =  255 bits (651), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 181/411 (44%), Positives = 223/411 (54%), Gaps = 57/411 (13%)

Query: 9   TTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDV 68
           T  SR G    GGEIV VQGGHIVRSTGRKDRHSKVCTA+GPRDRRVRLSAHTAIQFYDV
Sbjct: 61  TPRSRGGGGGGGGEIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDV 120

Query: 69  QDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAK--SRNAHHQQSEA 126
           QDRLGYDRPSKAVDWLIK AK AID+L  LP W P        + A   S + H   +E 
Sbjct: 121 QDRLGYDRPSKAVDWLIKNAKDAIDKLDVLPAWQPTAGGAGAGNAAAPPSSSTHPDSAEN 180

Query: 127 NEERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTD--- 183
           ++++       +  V +         +  +SFLPP+LDSD+IADTIKSFFPMG +     
Sbjct: 181 SDDQ-----AQAITVAHTAFDFAGGGSGGTSFLPPSLDSDAIADTIKSFFPMGGTAGGEA 235

Query: 184 ------TTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHA 237
                   +S++ FQ+Y+PDLLSR T S SQ+LRLSLQS  +P             H   
Sbjct: 236 SSSTTAAQSSAMGFQSYTPDLLSR-TGSQSQELRLSLQSLPDPM----------FHHQQH 284

Query: 238 HSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAAD 297
                         Q LFSG       + +    + W+ + + ++ QRM+ WN       
Sbjct: 285 RHGGGGGGGNGTTQQALFSGAA-----NYSFGGGAMWA-TEQQAQNQRMLPWNV------ 332

Query: 298 DSAGNASGGGFVFN-----SQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIG 352
              G   G  ++FN     +        L G    F  QRGPLQSSN PS R W   P  
Sbjct: 333 PDPGGGGGAAYLFNVSQQAAHMQAAAAALGGHQSQFFFQRGPLQSSNQPSERGW---PET 389

Query: 353 LTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQ 403
           +  D++  HH          Q  +  SV + IGFA+P   FSGFR+PARIQ
Sbjct: 390 VEADNQMSHH----------QGGLSPSVSAAIGFAAPGIGFSGFRLPARIQ 430

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82277|TCP10_ARATH Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/214 (49%), Positives = 130/214 (60%), Gaps = 38/214 (17%)

Query: 20  GGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 79
           GGEIVEVQGGHI+R+TGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK
Sbjct: 12  GGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 71

Query: 80  AVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSN 139
           AVDWLIKKAK AID+L EL                ++     +Q   N +     P S  
Sbjct: 72  AVDWLIKKAKTAIDKL-EL---------------GETTTTTTRQEPVNTK-----PESPT 110

Query: 140 DVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFP-MGASTDTTASSIQFQNY---- 194
                 +V     N  + F+   LD +   D +K+FFP    +     ++I FQNY    
Sbjct: 111 ------LVFQRENNDQTQFVAANLDPE---DAMKTFFPATTTTNGGGGTNINFQNYPHQD 161

Query: 195 SPDLLSRTTT---SHSQDLRLSLQSFQEPNSILL 225
             +++SRTTT   + SQDL LSL  FQ  N+ ++
Sbjct: 162 DNNMVSRTTTPPPNLSQDLGLSLHPFQGNNNTVV 195

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LT05|PCF7_ORYSJ Transcription factor PCF7 OS=Oryza sativa subsp. japonica GN=PCF7 PE=2 SV=2

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 175/338 (51%), Gaps = 63/338 (18%)

Query: 28  GGHIVRST-GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIK 86
            G IVRS  GRKDRHSKVCTA+G RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVDWL++
Sbjct: 130 AGRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMR 189

Query: 87  KAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPM 146
            AKAAID   ELP           AST        +Q EA E+      G  N       
Sbjct: 190 NAKAAID---ELPDRAEAPPPPAAAST--------EQPEATEQATSTSYGFGNTTGG--T 236

Query: 147 VETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSI--QFQNYSPDLLSRTTT 204
           + +     + SFLP +L +D ++D++KS FP  ++    AS+   +++   PDLLSRTT+
Sbjct: 237 MTSAASAAAGSFLPHSLGADRVSDSVKSLFPSSSTASGAASAGHDEYRGSPPDLLSRTTS 296

Query: 205 SHS-QDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGG 263
           +   Q+L L+LQ                         S+QHQ        +FS  +    
Sbjct: 297 NQQPQELCLTLQ-------------------------SNQHQ--------IFSHVSSNHH 323

Query: 264 YDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFG 323
              +SA    W + +     QRM AW++   +  D  G  +G G++F      P +    
Sbjct: 324 GMISSAGVPGWPDHS-----QRMQAWHAPENSTGDGRGGGNGDGYMFAM----PSRQGLD 374

Query: 324 QNQLFHSQRGPLQSSNT--PSVRAWIDQPIGLTNDHRQ 359
           Q+QLF S   PLQSS     S RAW+D P+ +   H Q
Sbjct: 375 QSQLF-SHGEPLQSSGRGWASARAWLD-PLAVAAIHHQ 410

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WV68|PCF7_ORYSI Transcription factor PCF7 OS=Oryza sativa subsp. indica GN=PCF7 PE=4 SV=1

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 175/337 (51%), Gaps = 63/337 (18%)

Query: 29  GHIVRST-GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKK 87
           G IVRS  GRKDRHSKVCTA+G RDRRVRL+AHTAI+FYDVQDRLGYDRPSKAVDWL++ 
Sbjct: 131 GRIVRSAAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRN 190

Query: 88  AKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPMV 147
           AKAAID   ELP           AST        +Q E  E+ N    G  N       +
Sbjct: 191 AKAAID---ELPDRAEAPPPPAAAST--------EQPEGTEQANSTSYGFGNTTGG--TM 237

Query: 148 ETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSI--QFQNYSPDLLSRTTTS 205
            +     + SFLP +L +D ++D++KS FP  ++    AS+   +++   PDLLSRTT++
Sbjct: 238 TSAASAAAGSFLPHSLGADRVSDSVKSLFPSSSTASGAASAGHDEYRGSPPDLLSRTTSN 297

Query: 206 HS-QDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGY 264
              Q+L L+LQ                         S+QHQ        +FS  +     
Sbjct: 298 QQPQELCLTLQ-------------------------SNQHQ--------IFSHVSSNHHG 324

Query: 265 DTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPPPVQPLFGQ 324
             +SA    W + +     QRM AW++   +  D  G  +G G++F      P +    Q
Sbjct: 325 MISSAGVPGWPDHS-----QRMQAWHAPENSTGDGRGGGNGDGYMFAM----PSRQGLDQ 375

Query: 325 NQLFHSQRGPLQSSNT--PSVRAWIDQPIGLTNDHRQ 359
           +QLF S   PLQSS     S RAW+D P+ +   H Q
Sbjct: 376 SQLF-SHGEPLQSSGRGWASARAWLD-PLAVAAIHHQ 410

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q93V43|TCP2_ARATH Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 3/72 (4%)

Query: 31  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
           + R++G KDRHSKV T+KGPRDRRVRLS  TA+QFYD+QDRLGYD+PSKAV+WLI   KA
Sbjct: 36  VSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLI---KA 92

Query: 91  AIDELAELPPWN 102
           A D ++ELP  N
Sbjct: 93  AEDSISELPSLN 104

Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164).

Arabidopsis thaliana (taxid: 3702)

>sp|Q10CE8|PCF6_ORYSJ Transcription factor PCF6 OS=Oryza sativa subsp. japonica GN=PCF6 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 56/69 (81%)

Query: 32  VRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAA 91
           VR+TG KDRHSKV TAKG RDRRVRLS  TAIQFYD+QDRLG+D+PSKA++WLI  A  A
Sbjct: 47  VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 106

Query: 92  IDELAELPP 100
           ID L  L P
Sbjct: 107 IDTLPSLDP 115

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XMN1|PCF6_ORYSI Transcription factor PCF6 OS=Oryza sativa subsp. indica GN=PCF6 PE=4 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 55/67 (82%)

Query: 32  VRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAA 91
           VR+TG KDRHSKV TAKG RDRRVRLS  TAIQFYD+QDRLG+D+PSKA++WLI  A  A
Sbjct: 47  VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 106

Query: 92  IDELAEL 98
           ID L  L
Sbjct: 107 IDTLPSL 113

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
259130061	426	TCP4 [Citrus trifoliata]	1.0	1.0	0.976	0.0
449438881	428	PREDICTED: transcription factor TCP4-lik	0.922	0.918	0.579	1e-114
307557075	393	lanceolate [Capsicum annuum]	0.877	0.951	0.564	1e-106
255557057	595	conserved hypothetical protein [Ricinus	0.873	0.625	0.535	1e-103
359493803	398	PREDICTED: transcription factor TCP4-lik	0.894	0.957	0.604	1e-102
343197862	442	teosinte ranched/cycloidea/pcf family me	0.931	0.898	0.522	1e-101
224116694	408	predicted protein [Populus trichocarpa]	0.892	0.931	0.564	1e-101
307557079	400	lanceolate [Solanum tuberosum]	0.903	0.962	0.565	1e-101
295841591	435	MdTCP4B [Malus x domestica]	0.915	0.896	0.558	1e-100
121822539	400	lanceolate [Solanum lycopersicum] gi|121	0.913	0.972	0.561	1e-100

>gi|259130061|gb|ACV95483.1| TCP4 [Citrus trifoliata]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/426 (97%), Positives = 420/426 (98%)

Query: 1   MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH 60
           MGESHNHA TSSRLG+RNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH
Sbjct: 1   MGESHNHAITSSRLGMRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH 60

Query: 61  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAH 120
           TAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAH
Sbjct: 61  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAH 120

Query: 121 HQQSEANEERNFQYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGA 180
           HQQ+EANEERNF YPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGA
Sbjct: 121 HQQNEANEERNFPYPGSSNDVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGA 180

Query: 181 STDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSH 240
           STDTTASS QFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQH QQPHPHHHAHSH
Sbjct: 181 STDTTASSTQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHHQQPHPHHHAHSH 240

Query: 241 SHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAWNSGGGAADDSA 300
           SHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRM+AWNSGGGAADDSA
Sbjct: 241 SHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMMAWNSGGGAADDSA 300

Query: 301 GNASGGGFVFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQ 360
           GNASGGGFVFNSQQPPPVQPLFGQNQLFH+QRGPLQSSNTPSVRAWIDQPIGLTNDHRQQ
Sbjct: 301 GNASGGGFVFNSQQPPPVQPLFGQNQLFHTQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQ 360

Query: 361 HHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSST 420
           HHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGF IPARIQGEDEEHDHGIHNRPSS 
Sbjct: 361 HHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFCIPARIQGEDEEHDHGIHNRPSSA 420

Query: 421 SSDSRH 426
           SSDSRH
Sbjct: 421 SSDSRH 426

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438881|ref|XP_004137216.1| PREDICTED: transcription factor TCP4-like [Cucumis sativus] gi|449531426|ref|XP_004172687.1| PREDICTED: transcription factor TCP4-like [Cucumis sativus]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 267/461 (57%), Positives = 309/461 (67%), Gaps = 68/461 (14%)

Query: 1   MGESHNHATTSSRLGIRNTGG--EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLS 58
           MGESH   +TSSRLG+R  GG  EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLS
Sbjct: 1   MGESHRQTSTSSRLGMRTGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLS 60

Query: 59  AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGT-VTNTRASTAKSR 117
           AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELP W+P T   +T+    +S 
Sbjct: 61  AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWHPSTGNASTQGEEQQSL 120

Query: 118 NAHHQQSEANEERNFQ--------YPGSSNDVQNLP--------MVETPNQNQSSSFLPP 161
           N  ++   + +   F           GS + V   P        M E PN + +SSFLPP
Sbjct: 121 NDENENLLSVQRDVFNSTGNRRATVLGSDSRVSEFPLQNLQHTQMGEGPN-SSTSSFLPP 179

Query: 162 ALDSDSIADTIKSFFPMG---ASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQ 218
           +LDSDSIADTIKSFFP+G   A+ +TT+SSIQFQNY  DLLSR T+S +QDLRLSLQSFQ
Sbjct: 180 SLDSDSIADTIKSFFPIGTSAAAAETTSSSIQFQNYPQDLLSR-TSSQNQDLRLSLQSFQ 238

Query: 219 EPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSE-- 276
           +P +I        H HHHA   S  HQ ++    VLFSGT PL G+D  +A    WSE  
Sbjct: 239 DPIAI--------HRHHHAQHQSQGHQNEH----VLFSGTAPLSGFDVTTA---GWSEHN 283

Query: 277 ---SAEMSRFQRMVAWNS-GGGAADDSAGNASGGGFVFNSQQPPP-------VQPLFGQN 325
               AE+SRF R+ +WN+ G        G     G+VFNS   P        +QPLFG+N
Sbjct: 284 SLNPAEISRFPRITSWNASGAETGSGGGGGIRSAGYVFNSPHLPTALPPSQLMQPLFGEN 343

Query: 326 QLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIG 385
           Q F SQRGPLQSSNTPS+RAWID  +  T DH+Q        HQI   P++HQS  +G+G
Sbjct: 344 QFF-SQRGPLQSSNTPSIRAWIDPSLTHT-DHQQ--------HQI--PPSIHQSSYAGLG 391

Query: 386 FASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
           FAS  G FSGF IP RIQGE EEHD GI ++PSS SSDSRH
Sbjct: 392 FAS--GGFSGFHIPTRIQGE-EEHD-GISDKPSSASSDSRH 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307557075|gb|ADN51990.1| lanceolate [Capsicum annuum]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/432 (56%), Positives = 292/432 (67%), Gaps = 58/432 (13%)

Query: 11  SSRLGIR-NTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQ 69
           +SRLG R N  GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQ
Sbjct: 4   TSRLGARDNNVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQ 63

Query: 70  DRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEE 129
           DRLGYDRPSKAVDWLIKKAK AIDELAELPPW P  + +  A T   RN   QQ + N  
Sbjct: 64  DRLGYDRPSKAVDWLIKKAKPAIDELAELPPWKP-NIGSDDAGTTNERN-QKQQEDTNNN 121

Query: 130 RNFQYPGSSNDVQNLPMVETPNQNQSS---SFLPPALDSDSIADTIKSFFPMGASTDTTA 186
             FQ   +S    N+    +    +SS   SFLPP+L+SD+IADTIKSFFPMG++T + +
Sbjct: 122 FAFQQGNASLFDDNVAGPSSKRAMESSNTASFLPPSLESDAIADTIKSFFPMGSATSSNS 181

Query: 187 SSIQFQNY-SPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQ 245
           S++QFQ++  P LL R T S +QDL LSLQ FQ+P  ILL H+ Q +             
Sbjct: 182 SAMQFQSFQEPHLLPR-TNSQNQDLSLSLQ-FQDP--ILLHHQNQTN------------- 224

Query: 246 QQNEQVQVL----FSGTTPLGGYDTASAAASAWS----ESAEMSRFQRMVAWNSGGGAAD 297
            + EQVQV     F+G+TPL G+DT     S WS    ++ E+ R QR+ +W+    + D
Sbjct: 225 -RREQVQVQPPAHFTGSTPL-GFDT-----SGWSMHHQQTVELGRVQRVGSWSD---SRD 274

Query: 298 DSAGNASGGGFVFNSQQPPPV--QPLFGQNQLFHSQRGPLQSSNTPSVRAWID-QPIGLT 354
            + G   GGG++FNS  P PV  Q LFGQNQ+F +QRGPLQSSNT S+RAW+D   I + 
Sbjct: 275 TAPG---GGGYLFNS-PPAPVLLQQLFGQNQVF-TQRGPLQSSNTSSIRAWMDPSAIAIA 329

Query: 355 NDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIH 414
           +    QHHH            ++QS I G GFAS VG FSGFRIPARIQGE+EEHD GI 
Sbjct: 330 SADPSQHHHQAAF-------PMYQSTIPGYGFASDVGGFSGFRIPARIQGEEEEHD-GIS 381

Query: 415 NRPSSTSSDSRH 426
           ++PSS SSDSRH
Sbjct: 382 DKPSSASSDSRH 393

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557057|ref|XP_002519561.1| conserved hypothetical protein [Ricinus communis] gi|223541258|gb|EEF42810.1| conserved hypothetical protein [Ricinus communis]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 254/474 (53%), Positives = 290/474 (61%), Gaps = 102/474 (21%)

Query: 1   MGESHNH----ATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVR 56
           MGES          SSRLG RNT GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVR
Sbjct: 176 MGESQRQHQQQPARSSRLGTRNTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVR 235

Query: 57  LSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKS 116
           LSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDEL ELP WNP        +TA +
Sbjct: 236 LSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELPAWNP--------TTAVA 287

Query: 117 RNAHHQQSEANEERNFQYPGSSN----------------------DVQNLP----MVETP 150
           +++    ++  +ER++Q P  +N                      DVQ +     + E P
Sbjct: 288 KDS----TQIGDERDYQLPVENNLDAIGGNTKTPAATATTTTTAADVQGIEQQQHLAENP 343

Query: 151 NQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDL 210
             N SSSFLPP+LDSD+IADTIKSFFPMGA+ +TT    QFQ+Y PDLLSR T+S +QDL
Sbjct: 344 --NNSSSFLPPSLDSDAIADTIKSFFPMGATAETT----QFQSYPPDLLSR-TSSQNQDL 396

Query: 211 RLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTP-LGGYDTASA 269
           RLSL SFQEP  ILL              H H    QNEQ  +L SGT     G+D +SA
Sbjct: 397 RLSLHSFQEP--ILL-----------QQQHHHHGHAQNEQQVLLSSGTAAHHFGFDGSSA 443

Query: 270 AASAWSE-----SAEMSRFQRMV------AWNSGGGAADDSAGNASGGGFVFNSQQP--- 315
               WSE     SA+++RFQRM+      A              + GGGF+FN   P   
Sbjct: 444 ---GWSEHHQNHSADIARFQRMIAWNAAAAAVDATDTGSGGTSGSRGGGFIFNPILPQTV 500

Query: 316 ---PPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQ 372
              P +QPLFGQ+  F SQRGPLQSSN PS+RAWID P    + H       LHHH    
Sbjct: 501 SPTPLLQPLFGQSNQFLSQRGPLQSSNMPSIRAWID-PGADHHHHHHTQISQLHHH---- 555

Query: 373 QPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
               HQ    GI         SGFR+PARIQGE+EEHD GIHN+PSS SSDSRH
Sbjct: 556 ----HQQSFGGI---------SGFRVPARIQGEEEEHD-GIHNKPSSVSSDSRH 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493803|ref|XP_003634670.1| PREDICTED: transcription factor TCP4-like [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 268/443 (60%), Positives = 308/443 (69%), Gaps = 62/443 (13%)

Query: 1   MGESHNH--ATTSSRLGIRNT-GGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRL 57
           MGE+H    A +SSR+G+R+  GGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRL
Sbjct: 1   MGETHQQQQAASSSRMGMRSVVGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRL 60

Query: 58  SAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNP--GTVTNTRASTAK 115
           SAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELA+LP W+P   TVT   A+   
Sbjct: 61  SAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTAITVTAAAAAATT 120

Query: 116 SRNAHHQQSEANEERNFQYPGSSNDVQ-----NLPMVETPNQNQSSSFLPPALDSDSIAD 170
           +   HHQ+ E N  +     G  + VQ     N      PN NQ+ SFLPP+LDSD+IAD
Sbjct: 121 ATTTHHQEDEENPNQ-VAIDGDDDRVQMHHGNNPDPNPNPNPNQNPSFLPPSLDSDTIAD 179

Query: 171 TIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQ 230
           TIKSFFPMGAS ++++SS+QFQ+Y PDLLSR T+S +QDLRLSLQSFQ+P  +LL     
Sbjct: 180 TIKSFFPMGASGESSSSSVQFQSYPPDLLSR-TSSQNQDLRLSLQSFQDP--MLL----- 231

Query: 231 PHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAASAWSE--SAEMSRFQRMVA 288
                    H H     + Q Q LFS   PL G+D  SA   AWSE  +AEM RFQRMVA
Sbjct: 232 --------HHHHTQSHSHHQQQALFS---PL-GFDAPSA---AWSEHHAAEMGRFQRMVA 276

Query: 289 WNSGGGAADDSAGNASGGGFVFNS-----QQPPPVQPLFGQNQLFHSQRGPLQSSNTPSV 343
           WN+        A ++ GGGFVFNS       PPP+QPLF Q+Q++ SQRGPLQSSNTPS+
Sbjct: 277 WNA-------GAESSGGGGFVFNSPPTPTPAPPPLQPLFCQSQMY-SQRGPLQSSNTPSI 328

Query: 344 RAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQ 403
           RAWID PI  T DH   HH         Q   +  S+ISGIGF    G FSGFRIPARIQ
Sbjct: 329 RAWIDPPIAATIDHHHHHH---------QTTPIQPSMISGIGFVP--GGFSGFRIPARIQ 377

Query: 404 GEDEEHDHGIHNRPSSTSSDSRH 426
           GE EEHD GI ++PSS SSDSRH
Sbjct: 378 GE-EEHD-GISDKPSSASSDSRH 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343197862|gb|AEM05868.1| teosinte ranched/cycloidea/pcf family member [Lithospermum erythrorhizon]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 246/471 (52%), Positives = 303/471 (64%), Gaps = 74/471 (15%)

Query: 1   MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH 60
           MGE++ H     RLG+R++ GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH
Sbjct: 1   MGETYQH---RQRLGLRSSIGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH 57

Query: 61  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTA----KS 116
           TAIQFYDVQDRLGYDRPSKAVDWLIKKAK+AIDELAELP W+  T        A    ++
Sbjct: 58  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELPAWSLTTGLKQNGENANFDQQN 117

Query: 117 RNAHHQQSEAN-EERNF---------------QYPGSSNDVQNLPM---VETPNQNQSSS 157
            +  +QQ++ + E+R+                      N+ Q L +      PN ++SSS
Sbjct: 118 EDTQNQQNQIDFEQRDMLDSLAGPSSKRAFSRMIRNDENERQRLNLGGNNANPN-SRSSS 176

Query: 158 FLPPALDSDSIADTIKSFFPMGASTDT--TASSIQFQNY-SPDLLSRTTTSHSQDLRLSL 214
           FLPP++DSDSIADTIKSFFPMGAS +T  + S++QFQ++ +PDLLSR T+S +QDLRLSL
Sbjct: 177 FLPPSMDSDSIADTIKSFFPMGASNETNISTSAMQFQSFQAPDLLSR-TSSQNQDLRLSL 235

Query: 215 QSFQEPNSILLQ--------HRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDT 266
           QSFQ+P  +LL            Q    H    H H HQ Q       FSG TP+  YD+
Sbjct: 236 QSFQDP--MLLDHHHHQQHSQHSQHQTDHSEQEHLHGHQAQ----AAFFSGNTPV--YDS 287

Query: 267 ASAAASAWSES----AEMSRFQRMVAWNSG--GGAADDSAGNASGGGFVFNSQQPPP--V 318
                S WSE     AE+ RF R   WNSG   G++   A   +GGG++FN        +
Sbjct: 288 -----SGWSEQQQQVAELGRFPRFSGWNSGFDAGSSGGGATTGAGGGYIFNGTPAGTSLL 342

Query: 319 QPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLT---NDHRQQHHHHLHHHQILQQPA 375
           QP FGQNQ F SQRGPLQSS +PS+RAW+D P  +T    D+ QQ H  +    +L  P 
Sbjct: 343 QPFFGQNQFF-SQRGPLQSSISPSIRAWMD-PSAITIASADYNQQQHQTM----LLNYP- 395

Query: 376 VHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
              S +S IGF S VG FSGFR+PA+IQG++EE D GI+++PSS SSDS H
Sbjct: 396 ---STMSDIGFNSNVGGFSGFRVPAQIQGDEEEQD-GIYDKPSSASSDSHH 442

Source: Lithospermum erythrorhizon

Species: Lithospermum erythrorhizon

Genus: Lithospermum

Family: Boraginaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116694|ref|XP_002317368.1| predicted protein [Populus trichocarpa] gi|222860433|gb|EEE97980.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 246/436 (56%), Positives = 285/436 (65%), Gaps = 56/436 (12%)

Query: 1   MGESHNHATTSSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAH 60
           MGESH+ A TSSRLGI NT GEIVEVQGG IVR TGRKDRHSKVCTAKGPRDRRVRLSAH
Sbjct: 1   MGESHHQAATSSRLGISNTVGEIVEVQGGLIVRPTGRKDRHSKVCTAKGPRDRRVRLSAH 60

Query: 61  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAH 120
           TAIQFYDVQDRLGYDRPSKAVDWLIKKAK +IDELAELP W+P T   T  ++  +  + 
Sbjct: 61  TAIQFYDVQDRLGYDRPSKAVDWLIKKAKTSIDELAELPAWDPTTAGFTPKTSKTATRST 120

Query: 121 HQQSEANEER---NFQYPGSSN--DVQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSF 175
            QQ+  +E+    + +   +S   +VQN       N N S  FLPP+L+SD IADTIK+F
Sbjct: 121 KQQNICDEKEYGLSVENVATSKIAEVQNTQQQMAENPNSSLGFLPPSLESDVIADTIKTF 180

Query: 176 FP-MGASTDTTASSIQFQNYSPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPH 234
           FP +GAST+T++ +IQFQNY PDL+SR T+S SQDLRLSL SFQ P  ILLQH+   H H
Sbjct: 181 FPILGASTETSSPTIQFQNYPPDLMSR-TSSQSQDLRLSLLSFQGP--ILLQHQAHHHGH 237

Query: 235 HHAHSHSHQHQQQNEQVQVLFSGTTP-LGGYDTASAAASAWSES---AEMSRFQR-MVAW 289
                H             +FSGTT    G+D +S     WSE     E++RFQR +VAW
Sbjct: 238 QAQSEHQ------------VFSGTTAHHVGFDCSSG---GWSEQHYPQEITRFQRNLVAW 282

Query: 290 NSGGGAADDSAGNASGGGFVFNSQQPPP--------VQPLFGQNQLFHSQRGPLQSSNTP 341
           N    AAD  +G     G +FN+  PPP        VQP FGQNQ F SQRG LQSSNTP
Sbjct: 283 N----AADAGSGGGGSAGLIFNAPLPPPQTMPPSPLVQPFFGQNQFF-SQRGTLQSSNTP 337

Query: 342 SVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPAR 401
           S RAWID  I  T DH  Q                 Q+ ISGIGF +  G FSGFR+P R
Sbjct: 338 SFRAWIDPAI--TPDHHLQLQQ-----------QQQQTAISGIGFTASDGGFSGFRVPTR 384

Query: 402 IQGEDEEHDHGIHNRP 417
           IQGE+EE D GIHN+P
Sbjct: 385 IQGEEEERD-GIHNKP 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307557079|gb|ADN51992.1| lanceolate [Solanum tuberosum]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/428 (56%), Positives = 293/428 (68%), Gaps = 43/428 (10%)

Query: 11  SSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD 70
           +S L IRNT GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD
Sbjct: 4   TSGLSIRNTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD 63

Query: 71  RLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRN-AHHQQSEANEE 129
           RLGYDRP+KAVDWLIKKAK AIDELAELP W P T+ +  A+ A + N    Q  +  E+
Sbjct: 64  RLGYDRPNKAVDWLIKKAKPAIDELAELPAWKP-TIGSVSAAAATNTNIEQEQAQKQQED 122

Query: 130 RNFQY-PGSSNDVQNL--PMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTA 186
            NF +  G+ +   N+  P  +   ++ ++SFLPP+L+SD+IADTIKSFFPMG+ST   +
Sbjct: 123 NNFAFQQGNVSLFDNVAGPSSKRAMESNTASFLPPSLESDAIADTIKSFFPMGSSTSGNS 182

Query: 187 SSIQFQNY-SPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQ 245
           S++QF ++  P +LSR T S +QDL LSLQ FQ+P  ILL H+ Q   HH+  +H  Q Q
Sbjct: 183 SAMQFHSFQEPHMLSR-TNSQNQDLSLSLQ-FQDP--ILLHHQNQQAQHHNQTNHREQEQ 238

Query: 246 QQNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAW----NSGGGAADDSAG 301
            Q  Q    F+G TPL G+DT     S W      S  QR+ +W    ++G G    S G
Sbjct: 239 VQ-VQAPAHFTGNTPL-GFDT-----SGW------SMHQRLGSWSDSRDTGPGG---SGG 282

Query: 302 NASG-GGFVFNSQQPPP-VQPLFGQNQLFHSQRGPLQSSNTPSVRAWID-QPIGLTNDHR 358
             +G GG++FNS   P  +Q LFGQNQ F SQRGPLQSSNT SVRAW+D   I + +   
Sbjct: 283 AVTGPGGYLFNSPPAPALLQQLFGQNQFF-SQRGPLQSSNTSSVRAWMDPSTIAIASGDP 341

Query: 359 QQHHHHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPS 418
                  HHHQ +    ++ S I G GFAS VGEFSGFRIPARIQGE+EEHD GI ++PS
Sbjct: 342 S------HHHQAVL--PMYPSTIPGYGFASEVGEFSGFRIPARIQGEEEEHD-GISDKPS 392

Query: 419 STSSDSRH 426
           S SSDSRH
Sbjct: 393 SASSDSRH 400

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295841591|dbj|BAJ07176.1| MdTCP4B [Malus x domestica]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 263/471 (55%), Positives = 309/471 (65%), Gaps = 81/471 (17%)

Query: 1   MGESHNH------ATTSSRLGIR--NTGG----EIVEV-QGGHIVRSTGRKDRHSKVCTA 47
           MG+SH+H      ATTSSRLGIR  ++GG    +IVEV +G HIVR+TGRKDRHSKVCTA
Sbjct: 1   MGDSHHHHLNNHQATTSSRLGIRPPSSGGGVSTDIVEVVRGSHIVRATGRKDRHSKVCTA 60

Query: 48  KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVT 107
           KGPRDRRVRL+AHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDEL ELP WNP +++
Sbjct: 61  KGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELPSWNPHSIS 120

Query: 108 NTRASTAKSRNAHHQQSEANEERNF---QYPGSSN-------DVQNLPMVETPNQNQSSS 157
            T A  A       Q   A     F      GS+N        V      ++PN N  S+
Sbjct: 121 TTAAVPAMET----QNPSATGIHCFAAVDAIGSANRRTMVGSGVSEQQFAQSPNSN--ST 174

Query: 158 FLPPALDSDSIADTIKSFFPMG-----ASTDTTASSIQF-QNYSPDLLSRTTTSHSQDLR 211
           FLPP+LDSD+IADTIKSFFPMG     A+ ++ +S+IQF QNY PDLLS+  +S SQDLR
Sbjct: 175 FLPPSLDSDAIADTIKSFFPMGASAAAAAAESPSSTIQFHQNYPPDLLSK-ASSQSQDLR 233

Query: 212 LSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAAA 271
           LSLQSFQ+P  ILL H    + HHHA +H      QNE  Q LFSG+    G+D    + 
Sbjct: 234 LSLQSFQDP--ILLHHHDAQNQHHHAQTH------QNE--QTLFSGSQNQLGFD---GSP 280

Query: 272 SAWSE------SAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVFNSQQPP------PVQ 319
            +W+E        EM+RFQRMVAW+SGG     + G +S GGF+FNS  P       P+Q
Sbjct: 281 GSWAEHHHNQQQQEMNRFQRMVAWDSGG-----NGGPSSAGGFIFNSLLPTQQGSTSPLQ 335

Query: 320 ----PLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHHHQILQQPA 375
                LFGQ+Q F SQRGPLQSSN+PSVRAW      + +   QQ   H HHHQI  Q  
Sbjct: 336 QQQPSLFGQSQFF-SQRGPLQSSNSPSVRAW------MVDQQNQQSISHDHHHQI-SQSI 387

Query: 376 VHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
            HQ  ISG+GFAS  G FSGF IPARI GE EEHD G  ++PSS SS+SRH
Sbjct: 388 HHQQSISGMGFAS-GGGFSGFHIPARIHGE-EEHD-GTSDKPSSASSNSRH 435

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|121822539|gb|ABM65599.1| lanceolate [Solanum lycopersicum] gi|121822579|gb|ABM65600.1| lanceolate [Solanum lycopersicum]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 238/424 (56%), Positives = 285/424 (67%), Gaps = 35/424 (8%)

Query: 11  SSRLGIRNTGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD 70
           +SRLGIRNT GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD
Sbjct: 4   TSRLGIRNTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQD 63

Query: 71  RLGYDRPSKAVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEER 130
           RLGYDRPSKAVDWLIKKAK AIDELAELP W P   T + A+   +     Q  +  E+ 
Sbjct: 64  RLGYDRPSKAVDWLIKKAKPAIDELAELPAWKPTIGTASAAAATNTNLEQEQAQKQQEDN 123

Query: 131 NFQY-PGSSNDVQNL--PMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTAS 187
           NF +  G+ +   N+  P  +   ++ ++SFLPP+L+SD+IADTIKSFFPMG+ST   +S
Sbjct: 124 NFAFQQGNVSLFDNVAGPSSKRAIESNTASFLPPSLESDAIADTIKSFFPMGSSTSANSS 183

Query: 188 SIQFQNY-SPDLLSRTTTSHSQDLRLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQ 246
           ++QF ++  P +LSR   S +QDL LSLQ FQ+P  ILL H+ Q   HH+  +H  Q Q 
Sbjct: 184 AMQFHSFQEPHMLSR-ANSQNQDLSLSLQ-FQDP--ILLHHQNQQAQHHNQTNHREQEQV 239

Query: 247 QNEQVQVLFSGTTPLGGYDTASAAASAWSESAEMSRFQRMVAW-NSGGGAADDSAGNASG 305
           Q  Q    F G TPL G+DT     S W      S  QR+ +W +S       S G  +G
Sbjct: 240 QG-QAPAHFGGNTPL-GFDT-----SGW------SMHQRLRSWSDSREIGPGGSGGAVTG 286

Query: 306 -GGFVFNSQQPPP-VQPLFGQNQLFHSQRGPLQSSNTPSVRAWID-QPIGLTNDHRQQHH 362
            GG++FNS   P  +Q LFGQNQ F SQRGPLQSSNT SVRAW+D   I + +     HH
Sbjct: 287 PGGYLFNSPPAPALLQQLFGQNQFF-SQRGPLQSSNTSSVRAWMDPSAIAIASGDPSNHH 345

Query: 363 HHLHHHQILQQPAVHQSVISGIGFASPVGEFSGFRIPARIQGEDEEHDHGIHNRPSSTSS 422
                       +++ S I G GFAS VG FSGFRIPARIQGE+EEHD GI ++PSS SS
Sbjct: 346 QAAL--------SMYPSTIPGYGFASEVGGFSGFRIPARIQGEEEEHD-GISDKPSSASS 396

Query: 423 DSRH 426
           DSRH
Sbjct: 397 DSRH 400

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2086350	420	TCP4 "AT3G15030" [Arabidopsis	0.889	0.902	0.494	9.1e-84
TAIR|locus:2009595	391	TCP3 "TEOSINTE BRANCHED 1, cyc	0.427	0.465	0.585	5.2e-77
TAIR|locus:2055861	361	TCP10 "AT2G31070" [Arabidopsis	0.262	0.310	0.690	3e-48
TAIR|locus:2124539	365	TCP2 "AT4G18390" [Arabidopsis	0.161	0.189	0.694	1.2e-21
TAIR|locus:2076492	355	PTF1 "AT3G02150" [Arabidopsis	0.161	0.194	0.681	5.5e-19
TAIR|locus:2009797	324	TCP24 "AT1G30210" [Arabidopsis	0.161	0.212	0.638	2.6e-18
TAIR|locus:2181479	242	TCP17 "AT5G08070" [Arabidopsis	0.164	0.289	0.583	2.7e-17
TAIR|locus:2173557	360	TCP5 "AT5G60970" [Arabidopsis	0.157	0.186	0.6	1.9e-16
UNIPROTKB|O49250	286	CYC "Transcription factor CYCL	0.143	0.213	0.590	5e-15
TAIR|locus:2012403	356	TCP12 "AT1G68800" [Arabidopsis	0.152	0.182	0.538	1.7e-14

TAIR|locus:2086350 TCP4 "AT3G15030" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 207/419 (49%), Positives = 240/419 (57%)

Query:    21 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 80
             GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLG+DRPSKA
Sbjct:    29 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKA 88

Query:    81 VDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSND 140
             VDWLIKKAK +IDELAELPPWNP       A+ AK R    +   +      Q       
Sbjct:    89 VDWLIKKAKTSIDELAELPPWNPADAIRLAAANAKPRRTTAKTQISPSPPPPQQQQQQQQ 148

Query:   141 VQ-----NLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPM-GASTDTTASSIQFQNY 194
             +Q     N    E P+ N+SS FLPP++DSDSIADTIKSFFP+ G+ST+  ++     NY
Sbjct:   149 LQFGVGFNGGGAEHPSNNESS-FLPPSMDSDSIADTIKSFFPVIGSSTEAPSNHNLMHNY 207

Query:   195 S----PDLLSRTTTSHSQDLRLSLQSFQE-PNSILLXXXXXXXXXXXXXXXXXXXXXXXX 249
                  PDLLSRT  S +QDLRLSLQSF + P S+L                         
Sbjct:   208 HHQHPPDLLSRTN-SQNQDLRLSLQSFPDGPPSLL-------------HHQHHHHTSASA 253

Query:   250 XXXVLFSG-TTPLGGYDTXXXXXXXXXXXXXXXRFQRMVAWXXXXXXXXXXXXXXXXXXF 308
                 LF G + PLG +DT               R QR+VAW                  F
Sbjct:   254 SEPTLFYGQSNPLG-FDTSSWEQQSSEFG----RIQRLVAWNSGGGGGATDTGNGGGFLF 308

Query:   309 VFNSQQPPPVQPLFGQNQLFHSQRGPLQSSNTPSVRAWIDQPIGLTNDXXXXXXXXXXXX 368
                +      QP+ GQ+Q  +SQRGPLQSS +P +RAW D P    +             
Sbjct:   309 APPTPSTTSFQPVLGQSQQLYSQRGPLQSSYSPMIRAWFD-P----HHHHQSISTDDLNH 363

Query:   369 XXXXXPAVHQSVISGIGFASPVGEFS-GFRIPARIQGEDEEHDHGIHNRPSSTSSDSRH 426
                  P VHQS I GIGFAS  GEFS GFRIPAR QG++EE   G+ ++PSS SS SRH
Sbjct:   364 HHHLPPPVHQSAIPGIGFAS--GEFSSGFRIPARFQGQEEEQHDGLTHKPSSASSISRH 420

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2009595 TCP3 "TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
 Identities = 116/198 (58%), Positives = 138/198 (69%)

Query:    21 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKA 80
             GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSA TAIQFYDVQDRLG+DRPSKA
Sbjct:    33 GEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKA 92

Query:    81 VDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSND 140
             VDWLI KAK+AID+LA+LPPWNP       A+ A +      ++  +       P    +
Sbjct:    93 VDWLITKAKSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPP-----PPQPEE 147

Query:   141 VQNLPMVETPNQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLS 200
              ++  + E   ++  SSFLP ++DSDSIADTIKSFFP+       AS+ Q  ++ P   S
Sbjct:   148 TEHHRIGE--EEDNESSFLPASMDSDSIADTIKSFFPV-------ASTQQSYHHQPP--S 196

Query:   201 RTTTSHSQDLRLSLQSFQ 218
             R  T +   LRLSLQSFQ
Sbjct:   197 RGNTQNQDLLRLSLQSFQ 214

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2055861 TCP10 "AT2G31070" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
 Identities = 78/113 (69%), Positives = 85/113 (75%)

Query:    20 GGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 79
             GGEIVEVQGGHI+R+TGRKDRHSKV T+KGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK
Sbjct:    12 GGEIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSK 71

Query:    80 AVDWLIKKAKAAIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNF 132
             AVDWLIKKAK AID+L EL      T      +T         Q E N++  F
Sbjct:    72 AVDWLIKKAKTAIDKL-ELGETTTTTTRQEPVNTKPESPTLVFQRENNDQTQF 123

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IGI;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2124539 TCP2 "AT4G18390" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 50/72 (69%), Positives = 60/72 (83%)

Query:    31 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
             + R++G KDRHSKV T+KGPRDRRVRLS  TA+QFYD+QDRLGYD+PSKAV+WLIK   A
Sbjct:    36 VSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK---A 92

Query:    91 AIDELAELPPWN 102
             A D ++ELP  N
Sbjct:    93 AEDSISELPSLN 104

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IMP

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2076492 PTF1 "AT3G02150" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 5.5e-19, P = 5.5e-19
 Identities = 47/69 (68%), Positives = 54/69 (78%)

Query:    31 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
             + R+ G KDRHSKVCT +G RDRRVRLS  TAIQ YD+Q+RLG D+PSKAVDWL+  AK 
Sbjct:    68 VSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKE 127

Query:    91 AIDELAELP 99
              IDEL  LP
Sbjct:   128 EIDELPPLP 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2009797 TCP24 "AT1G30210" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 46/72 (63%), Positives = 57/72 (79%)

Query:    31 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
             + R++G KDRHSKV T+KG RDRR+RLS  TAIQFYD+QDRLG+D+PSKAV+WLI    A
Sbjct:    44 VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN---A 100

Query:    91 AIDELAELPPWN 102
             A D + +LP  N
Sbjct:   101 ASDSITDLPLLN 112

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048366 "leaf development" evidence=IMP;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2181479 TCP17 "AT5G08070" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 42/72 (58%), Positives = 53/72 (73%)

Query:    31 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
             + R+ G KDRHSKVCT +G RDRR+RLS  TAIQ YD+Q+RLG  +PSK +DWL++ AK 
Sbjct:    27 VSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKN 86

Query:    91 AIDELAEL--PP 100
              +D L  L  PP
Sbjct:    87 DVDLLPPLQFPP 98

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0030154 "cell differentiation" evidence=IGI

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

TAIR|locus:2173557 TCP5 "AT5G60970" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:    31 IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
             + R+ G KDRHSKVCT +G RDRR+RLS  TAIQ YD+QDRLG  +PSK +DWL++ AK 
Sbjct:    57 VSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAK- 115

Query:    91 AIDELAELPP 100
               D++ +LPP
Sbjct:   116 --DDVDKLPP 123

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009965 "leaf morphogenesis" evidence=IGI;RCA

GO:0030154 "cell differentiation" evidence=IGI;RCA

GO:0045962 "positive regulation of development, heterochronic" evidence=IGI

GO:0048366 "leaf development" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|O49250 CYC "Transcription factor CYCLOIDEA" [Antirrhinum majus (taxid:4151)]

 Score = 203 (76.5 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 36/61 (59%), Positives = 50/61 (81%)

Query:    37 RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELA 96
             +KDRHSK+ T++GPRDRRVRLS   A +F+D+Q+ LG+D+PSK +DWL+ K+K AI EL 
Sbjct:    87 KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTAIKELV 146

Query:    97 E 97
             +
Sbjct:   147 Q 147

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2012403 TCP12 "AT1G68800" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 35/65 (53%), Positives = 51/65 (78%)

Query:    33 RSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAI 92
             R+  ++DRHSK+CTA+GPRDRR+RLS   A +F+D+QD LG+D+ SK ++WL  K+K +I
Sbjct:   108 RTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSI 167

Query:    93 DELAE 97
              +L E
Sbjct:   168 KQLKE 172

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:2000032 "regulation of secondary shoot formation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LPR5	TCP4_ARATH	No assigned EC number	0.5270	0.8755	0.8880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
pfam03634	122	pfam03634, TCP, TCP family transcription factor	7e-36
PLN03106	447	PLN03106, TCP2, Protein TCP2; Provisional	2e-22
PLN03105	324	PLN03105, TCP24, transcription factor TCP24 (TEOSI	2e-17

>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor

 Score =  127 bits (322), Expect = 7e-36
 Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 34  STGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAID 93
           + G+KDRHSK  T  G RDRRVRLSA  A +F+D+QD LG+D PSK ++WL+++AK AI 
Sbjct: 1   AAGKKDRHSKRHTKVGGRDRRVRLSAECAARFFDLQDELGFDSPSKTIEWLLQQAKPAII 60

Query: 94  ELAELPPWNPGTVTNTRASTAKSRNAHHQQSEA 126
            L       P    ++  S AKS     Q + A
Sbjct: 61  ALTGTS--TPPAKCSSAKSAAKSSKDPQQAASA 91

This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure. Length = 122

>gnl|CDD|215579 PLN03106, TCP2, Protein TCP2; Provisional

 Score = 98.6 bits (245), Expect = 2e-22
 Identities = 99/338 (29%), Positives = 133/338 (39%), Gaps = 66/338 (19%)

Query: 31  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
           + R++G KDRHSKV T+KG RDRRVRLS  TAIQFYD+QDRLGYD+PSKAV+WLI   KA
Sbjct: 68  VSRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLI---KA 124

Query: 91  AIDELAELPPWNPGTVTNTRASTAKSRNAHHQQSEANEERNFQYPGSSNDVQNLPMVETP 150
           A D ++ELP  N     N+   T K  +   + S+  E+        S+D ++     T 
Sbjct: 125 AEDSISELPSLN-----NSFPDTPKQLSDEKRTSDGTEQGF-----DSDDEEHENQTLTQ 174

Query: 151 NQNQSSSFLPPALDSDSIADTIKSFFPMGASTDTTASSIQFQNYSPDLLSRTTTSHSQDL 210
           NQ Q +S    A  S S                                    TS    L
Sbjct: 175 NQAQHNSLSKSACSSTS-----------------------------------DTSKGSGL 199

Query: 211 RLSLQSFQEPNSILLQHRQQPHPHHHAHSHSHQHQQQNEQVQVLFSGTTPLGGYDTASAA 270
            LS    ++      + R         H+H+  H   N   Q         GG D  +  
Sbjct: 200 SLSRSELRDKARERARERTAKEKEKEDHNHAAHHNNNNPISQNSSFTELLTGGIDPVNNN 259

Query: 271 ASAWSESAEMSRFQRMVAWNSGGGAADDSAGNASGGGFVF-NSQQPPPVQPLFGQNQLFH 329
              W  SA   +                S  +  G G +  +S +        GQ QL +
Sbjct: 260 R-QWMASAPSGQKAAAARQWP-------SPMDYFGSGLLGGSSSRTHHSSGFPGQIQLGN 311

Query: 330 SQRGPLQSSNTPSVRAWIDQPIGLTNDHRQQHHHHLHH 367
           S   P+ +++          P     DH   HHH   H
Sbjct: 312 SIPQPISTNS---------HPFSSIGDHHHHHHHQHQH 340

Length = 447

>gnl|CDD|178652 PLN03105, TCP24, transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

 Score = 82.2 bits (202), Expect = 2e-17
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query: 31  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKA 90
           + R++G KDRHSKV T+KG RDRR+RLS  TAIQFYD+QDRLG+D+PSKAV+WLI  A  
Sbjct: 44  VSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASD 103

Query: 91  AIDEL 95
           +I +L
Sbjct: 104 SITDL 108

Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
PF03634	138	TCP: TCP family transcription factor; InterPro: IP	100.0
PLN03105	324	TCP24 transcription factor TCP24 (TEOSINTE BRANCHE	99.97
PLN03106	447	TCP2 Protein TCP2; Provisional	99.97

>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]

Probab=100.00  E-value=1.2e-37  Score=269.87  Aligned_cols=65  Identities=58%  Similarity=0.990  Sum_probs=63.2

Q ss_pred             cCCCCCCccccccCCCCCCceeecCHHHHHHHhhhhhhhCCCCCChhHHHHHHhcHHHHHHHhcC
Q 014360           34 STGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAEL   98 (426)
Q Consensus        34 ~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~Lqd~LG~dk~skTveWLL~~ak~AI~~l~~~   98 (426)
                      +++|||||||||||+|+||||||||++||++|||||||||||||||||||||++||+||+||+..
T Consensus         1 ~~~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~   65 (138)
T PF03634_consen    1 AAGKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQS   65 (138)
T ss_pred             CCCCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999999999999999999999999986

The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].

>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

Probab=99.97  E-value=6.6e-33  Score=265.69  Aligned_cols=75  Identities=61%  Similarity=0.971  Sum_probs=71.6

Q ss_pred             CCceEEeecccccccCCCCCCccccccCCCCCCceeecCHHHHHHHhhhhhhhCCCCCChhHHHHHHhcHHHHHHHhcCC
Q 014360           20 GGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELP   99 (426)
Q Consensus        20 ~~~iv~v~~~~~~r~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~Lqd~LG~dk~skTveWLL~~ak~AI~~l~~~~   99 (426)
                      ..+||.|     .|+.++||||||||||+|+||||||||++||++||+||||||||||||||||||++||+||+||+.+.
T Consensus        38 ssrivrv-----sRa~g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~AI~ELp~l~  112 (324)
T PLN03105         38 SSRIIRV-----SRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLN  112 (324)
T ss_pred             cceEEEe-----eccCCCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHHHHhcccCc
Confidence            4588888     89999999999999999999999999999999999999999999999999999999999999988765

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=99.97  E-value=1.2e-32  Score=273.90  Aligned_cols=71  Identities=68%  Similarity=0.989  Sum_probs=67.8

Q ss_pred             cccCCCCCCccccccCCCCCCceeecCHHHHHHHhhhhhhhCCCCCChhHHHHHHhcHHHHHHHhcCCCCC
Q 014360           32 VRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPPWN  102 (426)
Q Consensus        32 ~r~~~~kDRHsKv~ta~g~RdRRvRls~~~A~~ff~Lqd~LG~dk~skTveWLL~~ak~AI~~l~~~~~~~  102 (426)
                      .|+.++||||||||||+|+||||||||++|||+||+||||||||||||||||||++||+||+||+.|....
T Consensus        69 sRasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~~sf  139 (447)
T PLN03106         69 SRASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLNNSF  139 (447)
T ss_pred             ecccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhcccccC
Confidence            67889999999999999999999999999999999999999999999999999999999999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00