Citrus Sinensis ID: 014369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHcccccccccEEEcccHHHHHHHHHccccEEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEcEcccccEEcccccccEccccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHcccccEEEEcccccHHHHHHHHccccEEEEEEccHHHHcHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHccHHHHEEHcccHHHHHHHHHHHHHHcccEEEEccHcccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mssleeplgldklpsmstidriqrfssnacrpsgdgmgmgscwiegsscstsnsydedydeytreafpwrrhtrdmshgdsfsrrtvslgrnhkmFGSACDiynsncndkdiRDITNKFLKGIPRFVKIVevgprdglqnekntvptgVKVELIRRLVSsglpvveatsfvspkwvpqlaDARDVMEAVRDLegarlpvltpnlKGFEAAIAAGAKEVAIFASASEafsksnincsieDSLVRYRAVAHAAKVLSIPVRGYVSCvvgcpvegaippskVAYVAKELHdmgcfeislgdtigvgtpgtvvPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGistvdcsvaglggcpyakgasgnvaTEDVVYMLSGLGVETNVDLRKLMLagdfinkhlgrpsgskTAIALNRIAADASKI
Flexible Loop (DISEMBL)
mssleeplgldklpsmstiDRIQRfssnacrpsgdGMGMGSCWIEGSSCSTSNSYDEDYDEYTReafpwrrhtrdmshgdsfsrrtvslgrNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVevgprdglqnekntvptgvkVELIRRLVSSglpvveatsfvspkwvpqLADARDVMEAVRDLEgarlpvltpnLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINkhlgrpsgsktaiALNRIAADASKI
Low Complexity Region (SEG)
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLkgfeaaiaagakevaifaSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Disordered region (IsUnstruct)
***************************************GSCWIE****************YTREAFPW******************SLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG*********************
Disordered Region (DISOPRED)
*****EP*GLDKLPSMSTIDRI*******************CWI****************************************************************************KGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIA******
Disordered Region (DISEMBL)
********GLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGS************DEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Disordered Region (DISPRO)
*******LGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
O81027	468	Hydroxymethylglutaryl-CoA	yes	no	0.997	0.908	0.737	0.0
P97519	325	Hydroxymethylglutaryl-CoA	yes	no	0.723	0.947	0.626	1e-111
P35915	298	Hydroxymethylglutaryl-CoA	yes	no	0.697	0.996	0.656	1e-111
P38060	325	Hydroxymethylglutaryl-CoA	yes	no	0.725	0.950	0.621	1e-111
Q29448	325	Hydroxymethylglutaryl-CoA	yes	no	0.723	0.947	0.626	1e-110
Q5R9E1	325	Hydroxymethylglutaryl-CoA	yes	no	0.725	0.950	0.618	1e-109
Q8JZS7	343	3-hydroxymethyl-3-methylg	no	no	0.694	0.862	0.628	1e-109
Q8HXZ6	325	Hydroxymethylglutaryl-CoA	N/A	no	0.723	0.947	0.616	1e-108
P35914	325	Hydroxymethylglutaryl-CoA	yes	no	0.725	0.950	0.611	1e-108
Q8TB92	370	3-hydroxymethyl-3-methylg	no	no	0.694	0.8	0.621	1e-107

>sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/434 (73%), Positives = 362/434 (83%), Gaps = 9/434 (2%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+TSNS  +D  
Sbjct: 36  MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 94

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
            + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+    
Sbjct: 95  SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 154

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct: 155 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 214

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVM+AV  L+GARLPVLTPNLKGF+AA++AGAKEVAIFASASE+FS SNI
Sbjct: 215 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNI 274

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NC+IE+SL+RYR VA AAK  S+PVRGYVSCVVGCPVEG + PSKVAYV KEL+DMGCFE
Sbjct: 275 NCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFE 334

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH HDTYGQ+L NIL+SLQMGIS VD S
Sbjct: 335 ISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQMGISIVDSS 394

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           +AGLGGCPYAKGASGNVATEDVVYML+GLGV TNVDL KL+ AGDFI+KHLGRP+GSK A
Sbjct: 395 IAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHLGRPNGSKAA 454

Query: 414 IALN-RIAADASKI 426
           +ALN RI ADASKI
Sbjct: 455 VALNRRITADASKI 468

Involved in the catabolism of branched amino acids such as leucine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 4

>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/308 (62%), Positives = 241/308 (78%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R  +   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK++LI  L  +GLPV+EATSFV
Sbjct: 18  LRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           SPKWVPQ+AD  DV++ ++   G   PVLTPN+KGFE A+AAGAKEV+IF +ASE F++ 
Sbjct: 78  SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRK 137

Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
           N+NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA VAK+L+ MGC
Sbjct: 138 NVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGC 197

Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
           +EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQ+L N L++LQMG+S VD
Sbjct: 198 YEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQMGVSVVD 257

Query: 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI + L R + SK
Sbjct: 258 SSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQALNRKTSSK 317

Query: 412 TAIALNRI 419
            A A  ++
Sbjct: 318 VAQATCKL 325

Key enzyme in ketone body formation (ketogenesis). Terminal step in leucine catabolism.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/297 (65%), Positives = 237/297 (79%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
            P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD 
Sbjct: 2   FPQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADH 61

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            +VM+ +  L G   PVLTPNLKGF+AA+AAGAKEV+IF +ASE F+K NINCSIE+SL 
Sbjct: 62  AEVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLE 121

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+  V +AA+  SIPVRGYVSCV+GCP EG I  +KVA V+K+++ MGC+EISLGD IG+
Sbjct: 122 RFSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDRIGI 181

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTPG++  ML AVM  VPV  LAVH HDTYGQ+L NIL++LQMG+S VD SVAGLGGCPY
Sbjct: 182 GTPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPY 241

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
           A+GASGNVATED+VYML+GLG+ T VDL+KLM  G FI   L R + SK + A  R+
Sbjct: 242 AQGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQAACRL 298

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/309 (62%), Positives = 239/309 (77%)

Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
            +R ++   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSF
Sbjct: 17  SLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSF 76

Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
           VSPKWVPQ+AD  DV++ ++   G   PVLTPN+KGFE A+AAGAKEV++F + SE F++
Sbjct: 77  VSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTR 136

Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
            N NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA VAK+L+ MG
Sbjct: 137 KNANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMG 196

Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350
           C+EISLGDTIGVGTPG +  ML AVM  VPV  LAVH HDTYGQ+L N L++LQMG+S V
Sbjct: 197 CYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQMGVSVV 256

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS 410
           D SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI + L R + S
Sbjct: 257 DSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIHTGVNLQKLLEAGDFICQALNRKTSS 316

Query: 411 KTAIALNRI 419
           K A A  ++
Sbjct: 317 KVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/308 (62%), Positives = 239/308 (77%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R ++   +   P+ VKIVEVGPRDGLQNEKN VPT VK++LI  L  +GLPVVEATSFV
Sbjct: 18  LRAVSTSSVGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           SPKWVPQ+AD  +V++ ++   G   PVLTPN KGF+AA+AAGAKEVAIF +ASE F+K 
Sbjct: 78  SPKWVPQMADHAEVLKGIQKFPGVNYPVLTPNFKGFQAAVAAGAKEVAIFGAASELFTKK 137

Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
           NINCSI++SL R+  +  AA+   I VRGYVSCV+GCP EG I P+KVA V K+L+ MGC
Sbjct: 138 NINCSIDESLQRFDEILKAARAAGISVRGYVSCVLGCPYEGKISPAKVAEVTKKLYSMGC 197

Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
           +EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQ+L N L +LQMG+S +D
Sbjct: 198 YEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALAVHCHDTYGQALANTLTALQMGVSVMD 257

Query: 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            SVAGLGGCPYA+GASGN+ATED+VYML+GLG+ T V+L+KL+ AG FI + L R + SK
Sbjct: 258 SSVAGLGGCPYAQGASGNLATEDLVYMLAGLGIHTGVNLQKLLEAGAFICQALNRRTNSK 317

Query: 412 TAIALNRI 419
            A A  ++
Sbjct: 318 VAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/309 (61%), Positives = 238/309 (77%)

Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
           VSPKWVPQ+ D  +V++ ++   G   PVLTPNLKGFEAA+AAGAKEVAIF +ASE F+K
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVAIFGAASELFTK 136

Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
            NINCSIE+S  R+ A+  AA+  +I VRGYVSC +GCP EG I P+KVA V K+L+ MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKLYSMG 196

Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350
           C+EISLGDTIGVGTPG +  ML AVM  VP+  LAVH HDTYGQ+L N L++LQMG+S V
Sbjct: 197 CYEISLGDTIGVGTPGIMKGMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVV 256

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS 410
           D SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + S
Sbjct: 257 DSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSS 316

Query: 411 KTAIALNRI 419
           K A A  ++
Sbjct: 317 KVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/296 (62%), Positives = 235/296 (79%)

Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
           L G+P +VKIVEVGPRDGLQNEK  VPT +K+ELI +L  +GL V+E TSFVS +WVPQ+
Sbjct: 41  LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQM 100

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
           AD  +VM  +R   G R PVLTPNL+GF+ A+AAGA E+A+F +ASE+FSK NINCSIE+
Sbjct: 101 ADHAEVMRGIRQYPGVRYPVLTPNLQGFQHAVAAGATEIAVFGAASESFSKKNINCSIEE 160

Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
           S+ R++ V  +A+ + IPVRGYVSC +GCP EG+I P KV  V+K L+ MGC+EISLGDT
Sbjct: 161 SMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 220

Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359
           IGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +LQMGI+ VD +V+GLGG
Sbjct: 221 IGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG 280

Query: 360 CPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
           CPYAKGASGNVATED++YML+G+G+ T VDL K+M AG+FI K + + + SK A A
Sbjct: 281 CPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKVMEAGEFICKAVNKTTNSKVAQA 336

Involved in the catabolism of branched amino acids such as leucine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/308 (61%), Positives = 238/308 (77%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+EATSFV
Sbjct: 18  LRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           SPKWVPQ+AD  +V++ ++   G   PVL PNLKGFEAA+AAGAKEV+IF +ASE F+K 
Sbjct: 78  SPKWVPQMADHAEVLKGIQKFPGITYPVLIPNLKGFEAAVAAGAKEVSIFGAASELFTKK 137

Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
           N+NCSIE+S  R+ A+  AA+  +I VRGYVSCV+GCP EG I P+KVA V K+ + MGC
Sbjct: 138 NVNCSIEESFQRFDAILKAAQSANISVRGYVSCVLGCPYEGKISPAKVAEVTKKFYSMGC 197

Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
           +EISLGDTIGVGTPG +  ML AVM  VP   LAVH HDTYGQ+L N L++LQMG+S VD
Sbjct: 198 YEISLGDTIGVGTPGIMKDMLSAVMQEVPPAALAVHCHDTYGQALANTLMALQMGVSVVD 257

Query: 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + SK
Sbjct: 258 SSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSK 317

Query: 412 TAIALNRI 419
            A A  ++
Sbjct: 318 VAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Macaca fascicularis (taxid: 9541)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 236/309 (76%)

Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
           VSPKWVPQ+ D  +V++ ++   G   PVLTPNLKGFEAA+AAGAKEV IF +ASE F+K
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTK 136

Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
            NINCSIE+S  R+ A+  AA+  +I VRGYVSC +GCP EG I P+KVA V K+ + MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG 196

Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV 350
           C+EISLGDTIGVGTPG +  ML AVM  VP+  LAVH HDTYGQ+L N L++LQMG+S V
Sbjct: 197 CYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVV 256

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS 410
           D SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + S
Sbjct: 257 DSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSS 316

Query: 411 KTAIALNRI 419
           K A A  ++
Sbjct: 317 KVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/296 (62%), Positives = 232/296 (78%)

Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
           L G+P FVKIVEVGPRDGLQNEK  VPT +K+E I RL  +GL V+E TSFVS +WVPQ+
Sbjct: 71  LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQM 130

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
           AD  +VM+ +    G R PVLTPNL+GF  A+AAGA E+++F +ASE+FSK NINCSIE+
Sbjct: 131 ADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEE 190

Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
           S+ ++  V  +A+ ++IP RGYVSC +GCP EG+I P KV  V+K L+ MGC+EISLGDT
Sbjct: 191 SMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 250

Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359
           IGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +LQMGI+ VD +V+GLGG
Sbjct: 251 IGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG 310

Query: 360 CPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
           CPYAKGASGNVATED++YML+GLG+ T V+L K+M AGDFI K + + + SK A A
Sbjct: 311 CPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 366

Involved in the catabolism of branched amino acids such as leucine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
225435868	432	PREDICTED: hydroxymethylglutaryl-CoA lya	0.997	0.983	0.806	0.0
356521713	433	PREDICTED: hydroxymethylglutaryl-CoA lya	1.0	0.983	0.799	0.0
224105993	429	predicted protein [Populus trichocarpa]	0.990	0.983	0.810	0.0
356574064	435	PREDICTED: hydroxymethylglutaryl-CoA lya	1.0	0.979	0.781	0.0
356554185	433	PREDICTED: hydroxymethylglutaryl-CoA lya	1.0	0.983	0.774	0.0
356499297	433	PREDICTED: hydroxymethylglutaryl-CoA lya	1.0	0.983	0.767	0.0
357458799	433	Hydroxymethylglutaryl-CoA lyase [Medicag	1.0	0.983	0.769	0.0
84453198	433	putative hydroxymethylglutaryl-CoA lyase	1.0	0.983	0.762	0.0
449444847	432	PREDICTED: hydroxymethylglutaryl-CoA lya	0.992	0.979	0.763	0.0
30683260	433	Hydroxymethylglutaryl-CoA lyase [Arabido	0.997	0.981	0.737	0.0

>gi|225435868|ref|XP_002263865.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera] gi|296083893|emb|CBI24281.3| unnamed protein product [Vitis vinifera]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/433 (80%), Positives = 383/433 (88%), Gaps = 8/433 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLD L S+STID +QRFSSNACRP  + MGMGSCWI+G +CS+SN+ +EDY+
Sbjct: 1   MSSLEEPLGLDNLSSLSTID-LQRFSSNACRPRAEDMGMGSCWIDGRTCSSSNNCNEDYE 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSN-------CNDKDIR 113
            YTREAF W+R TR+ S GDS  RRT S GR+  ++GS+CD + S+       CN+K +R
Sbjct: 60  GYTREAFQWKRQTRETSQGDSLKRRTSSQGRSCMVYGSSCDSWYSSDHQYGFQCNNKGVR 119

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            + NKFL GIP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVS GLPVVEATSFVSP
Sbjct: 120 GMANKFLGGIPKFVKIVEVGPRDGLQNEKNIVPTAVKVELIHRLVSCGLPVVEATSFVSP 179

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVMEAVR+LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASE+FSKSNI
Sbjct: 180 KWVPQLADAKDVMEAVRNLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASESFSKSNI 239

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NCSIE+SL RYRAVA AAK LSIPVRGYVSCVVGCPVEGAI PSKVAYVAKEL+DMGCFE
Sbjct: 240 NCSIEESLTRYRAVALAAKKLSIPVRGYVSCVVGCPVEGAISPSKVAYVAKELYDMGCFE 299

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIGV TPG +VPMLEAVMAVVPVEKLAVH HDTYGQSLPNIL+SLQMGIST+D S
Sbjct: 300 ISLGDTIGVATPGAIVPMLEAVMAVVPVEKLAVHFHDTYGQSLPNILLSLQMGISTIDSS 359

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           VAGLGGCPYAKGASGNVATEDVVYML+GLGV+TNVDL KLML GDFI+  LGRPSGSKTA
Sbjct: 360 VAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLVGDFISNRLGRPSGSKTA 419

Query: 414 IALNRIAADASKI 426
           IAL+R+  DASKI
Sbjct: 420 IALSRVNVDASKI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521713|ref|XP_003529496.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/433 (79%), Positives = 380/433 (87%), Gaps = 7/433 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM TIDRIQRFSS ACRP  D +GMG+CWIEG SCSTSNS DED +
Sbjct: 1   MSSLEEPLGLDKLPSMCTIDRIQRFSSAACRPRVDNLGMGNCWIEGRSCSTSNSCDEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG------SACDI-YNSNCNDKDIR 113
           EYT E FPWRR TRD+S GDSFS++T+++GRN   FG       A D  Y+   N+K+++
Sbjct: 61  EYTAETFPWRRQTRDLSRGDSFSQKTMTMGRNSMKFGMIDNSFYASDYQYSPQSNNKNVQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  KF+KGIP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL SSGL V+EATSFVSP
Sbjct: 121 DMPYKFMKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLKGFEAAIAAGA+EVA+FASASE+FSKSNI
Sbjct: 181 KWVPQLADAKDVMQAVHNLGGIRLPVLTPNLKGFEAAIAAGAREVAVFASASESFSKSNI 240

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NCSIE+SLVRYRAV HAAK LSIPVRGYVSCVVGCPVEG IPPS+VAYVAKEL+DMGCFE
Sbjct: 241 NCSIEESLVRYRAVTHAAKELSIPVRGYVSCVVGCPVEGPIPPSRVAYVAKELYDMGCFE 300

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIGVGTPGTVVPML AVMAVVP EKLAVH HDTYGQSL NIL+SLQMGIS VD S
Sbjct: 301 ISLGDTIGVGTPGTVVPMLLAVMAVVPAEKLAVHFHDTYGQSLANILVSLQMGISAVDSS 360

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           VAGLGGCPYAKGASGNVATEDVVYML+GLGV+TNVDL KLM AG+FI KHLGRPSGSKT 
Sbjct: 361 VAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMSAGEFIGKHLGRPSGSKTT 420

Query: 414 IALNRIAADASKI 426
           IA +R+ ADASKI
Sbjct: 421 IAFSRVTADASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105993|ref|XP_002314006.1| predicted protein [Populus trichocarpa] gi|222850414|gb|EEE87961.1| predicted protein [Populus trichocarpa]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/433 (81%), Positives = 378/433 (87%), Gaps = 11/433 (2%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSM+TI+RIQRFSS ACRP  D +GMG CWIEG  CS+SNS +EDY 
Sbjct: 1   MSSLEEPLGFDKLPSMNTIERIQRFSSGACRPRADDIGMGHCWIEGRICSSSNSCEEDY- 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
           EYTRE FPW+RHTRD   G+   RRT+S G  + + GS+CD        Y+S  NDKDIR
Sbjct: 60  EYTRETFPWKRHTRDPCQGN---RRTMSSGSKNVVSGSSCDSRYFPDHQYSSKSNDKDIR 116

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           DITNKFLKGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVSSGLPVVEATSFVSP
Sbjct: 117 DITNKFLKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKVELIHRLVSSGLPVVEATSFVSP 176

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADARDVMEAV  LE +RLPVLTPNLKGFEAA+AAGAKEVA+FASASE+FSKSNI
Sbjct: 177 KWVPQLADARDVMEAVHGLEASRLPVLTPNLKGFEAAVAAGAKEVAVFASASESFSKSNI 236

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NCSI++SL RYRAV HAAK LSIPVRGYVSCV+GCP EG+I PSKVAYVAKELHDMGCFE
Sbjct: 237 NCSIKESLARYRAVTHAAKELSIPVRGYVSCVIGCPEEGSIHPSKVAYVAKELHDMGCFE 296

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIGVGTPGTV  MLEAVMAVVPVEKLA+H HDTYGQSLPNIL+SLQMGIS VD S
Sbjct: 297 ISLGDTIGVGTPGTVALMLEAVMAVVPVEKLAIHFHDTYGQSLPNILVSLQMGISVVDSS 356

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           VAGLGGCPYAKGASGNVATEDVVYML GLGV TNVDL KL+ AGDFI K LGRPSGSKTA
Sbjct: 357 VAGLGGCPYAKGASGNVATEDVVYMLHGLGVRTNVDLAKLLSAGDFICKQLGRPSGSKTA 416

Query: 414 IALNRIAADASKI 426
           +AL+R+ ADASKI
Sbjct: 417 VALSRVTADASKI 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574064|ref|XP_003555172.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/435 (78%), Positives = 379/435 (87%), Gaps = 9/435 (2%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDG--MGMGSCWIEGSSCSTSNSYDED 58
           MSSLEEPLGLDKLPSMSTIDRIQRFSS AC P  D   +G+G+CWIEG SCSTSNS +ED
Sbjct: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSAACCPRVDNFNLGLGNCWIEGRSCSTSNSCNED 60

Query: 59  YDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG-------SACDIYNSNCNDKD 111
            +EYT E FPWRR  RD+S GD+FS++++++GRN   FG       ++   Y+   N+ +
Sbjct: 61  SEEYTEETFPWRRQRRDLSRGDTFSQKSMTMGRNSMKFGMIDNSFYTSDYQYSPQNNNNN 120

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           ++D+  KF+KGIP FVKIVEVGPRDGLQNEKN VPT VK+ELI RL SSGL V+EATSFV
Sbjct: 121 VQDMAYKFMKGIPNFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFV 180

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           SPKWVPQLADA+DVM+AV +L G RLPVLTPNLKGFEAAIAAGA+EVA+FASASE+FSKS
Sbjct: 181 SPKWVPQLADAKDVMQAVHNLGGIRLPVLTPNLKGFEAAIAAGAREVAVFASASESFSKS 240

Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
           NINCSIE+SLVRYRAV  AAK LSIPVRGYVSCVVGCPVEG IPPSKVAYVAKEL+DMGC
Sbjct: 241 NINCSIEESLVRYRAVTRAAKQLSIPVRGYVSCVVGCPVEGPIPPSKVAYVAKELYDMGC 300

Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
           FEISLGDTIGVGTPGTVVPML AVMAVVP EKLAVH HDTYGQSLPNIL+SLQMGIS VD
Sbjct: 301 FEISLGDTIGVGTPGTVVPMLLAVMAVVPAEKLAVHFHDTYGQSLPNILVSLQMGISAVD 360

Query: 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+TNVDL KLMLAG+FI KHLGRPSGSK
Sbjct: 361 SSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLAGEFIGKHLGRPSGSK 420

Query: 412 TAIALNRIAADASKI 426
           TA+A +R+ ADASKI
Sbjct: 421 TAVAFSRVTADASKI 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554185|ref|XP_003545429.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/431 (77%), Positives = 377/431 (87%), Gaps = 5/431 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM+TIDRIQRFSS +CRP  D +GMG+CWIEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGLDKLPSMNTIDRIQRFSSGSCRPRVDNLGMGNCWIEGRSCSTSNSCNEDDE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG----SACDIYNS-NCNDKDIRDI 115
           EYT E FPW+  TRD+S  DSFS+++++ GR    FG    S  D  +S  C+ KD++ +
Sbjct: 61  EYTAETFPWKIQTRDLSQDDSFSQKSLTKGRRSMKFGMIDDSISDCQSSPKCHTKDMQGL 120

Query: 116 TNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW 175
             KFL  IP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSPKW
Sbjct: 121 AYKFLNSIPKFVKIVEVGPRDGLQNEKNIVPTSVKIELIHRLASTGLSVIEATSFVSPKW 180

Query: 176 VPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC 235
           VPQLADA+DVM+AV +L G RLPVLTPNLKGFEAA+A+GA+EVAIFASASE+FSKSNINC
Sbjct: 181 VPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAMASGAREVAIFASASESFSKSNINC 240

Query: 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295
           SIE+SL+R+RAV  AAK LSIPVRGYVSCV GCPVEG IPPSKVAYVAKEL+DMGCFEIS
Sbjct: 241 SIEESLIRFRAVTRAAKQLSIPVRGYVSCVAGCPVEGPIPPSKVAYVAKELYDMGCFEIS 300

Query: 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355
           LGDTIGVGTPGTVVPML AVMAVVP++K+AVH HDTYGQSLPNIL+SLQMGISTVD SVA
Sbjct: 301 LGDTIGVGTPGTVVPMLLAVMAVVPIDKIAVHFHDTYGQSLPNILVSLQMGISTVDSSVA 360

Query: 356 GLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
           GLGGCPYAKGASGNVATEDVVYML+GLGV+TNVDL KLMLAGDFI+ HLGRPS SKTAIA
Sbjct: 361 GLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFISNHLGRPSTSKTAIA 420

Query: 416 LNRIAADASKI 426
           LNR+ ++ASKI
Sbjct: 421 LNRVTSNASKI 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499297|ref|XP_003518478.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/431 (76%), Positives = 377/431 (87%), Gaps = 5/431 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM+TIDRIQRFSS +CRP  D +GMG+CWIEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGLDKLPSMNTIDRIQRFSSGSCRPRVDNLGMGNCWIEGRSCSTSNSCNEDDE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNS-----NCNDKDIRDI 115
           EYT E FPW+R TRD+S  DSFS++T+  GR    FG   D ++       C+ KD++ +
Sbjct: 61  EYTAETFPWKRQTRDLSPDDSFSQKTLIKGRKSMKFGMIDDSFSDCQTSPKCHTKDLQGL 120

Query: 116 TNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW 175
             K+L  IP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSPKW
Sbjct: 121 AYKYLNSIPKFVKIVEVGPRDGLQNEKNIVPTAVKIELIHRLASTGLSVIEATSFVSPKW 180

Query: 176 VPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC 235
           VPQLADA+DVM+AV +L G RLPVLTPNLKGFEAAIAAGA+EVAIFASASE+FSKSNINC
Sbjct: 181 VPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAIAAGAREVAIFASASESFSKSNINC 240

Query: 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295
           SIE+SL+R++AV HAAK LSIPVRGYVSCV GCPVEG IPPSKVAYVAKEL+DMGCFEIS
Sbjct: 241 SIEESLIRFQAVTHAAKQLSIPVRGYVSCVAGCPVEGPIPPSKVAYVAKELYDMGCFEIS 300

Query: 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA 355
           LGDTIGVGTPGTVVPML AVMAVVP++K+AVH HDTYGQSLPNIL+SLQMGISTVD SVA
Sbjct: 301 LGDTIGVGTPGTVVPMLLAVMAVVPIDKIAVHFHDTYGQSLPNILVSLQMGISTVDSSVA 360

Query: 356 GLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
           GLGGCPYAKGASGNVATEDVVYML+GLG++T+VDL KL+LAG+FI+ HLGRPS SKTAIA
Sbjct: 361 GLGGCPYAKGASGNVATEDVVYMLNGLGIKTDVDLGKLILAGEFISNHLGRPSTSKTAIA 420

Query: 416 LNRIAADASKI 426
           LNR+ ++ASKI
Sbjct: 421 LNRVTSNASKI 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458799|ref|XP_003599680.1| Hydroxymethylglutaryl-CoA lyase [Medicago truncatula] gi|355488728|gb|AES69931.1| Hydroxymethylglutaryl-CoA lyase [Medicago truncatula]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/433 (76%), Positives = 374/433 (86%), Gaps = 7/433 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSMST+DR+QRFSS  CRP  D +GMG+C+IEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRN-------HKMFGSACDIYNSNCNDKDIR 113
           +YT E +PW+R TRDMS GDSFS RT++ GRN          F ++   Y+   N+KD++
Sbjct: 61  DYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTLKSGIVDNSFYTSDYQYSQKRNNKDMQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  KF+KG+P FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSP
Sbjct: 121 DMAYKFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLKGFEAA+AAGA+EVA+FASASE+FSKSNI
Sbjct: 181 KWVPQLADAKDVMQAVHNLRGIRLPVLTPNLKGFEAAVAAGAREVAVFASASESFSKSNI 240

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NCSIE+SL RYRAV  AAK LSIPVRGYVSCVVGCPVEG +PPSKVAYVAK L+DMGCFE
Sbjct: 241 NCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVGCPVEGPVPPSKVAYVAKALYDMGCFE 300

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIGVGTPGTVVPML AVMA+VP EKLAVH HDTYGQSLPNIL+SLQMGIS VD S
Sbjct: 301 ISLGDTIGVGTPGTVVPMLLAVMAIVPTEKLAVHFHDTYGQSLPNILVSLQMGISAVDSS 360

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           VAGLGGCPYAKGASGNVATEDVVYML+GLG++TNVD+ KLM AGDFI K LGRPSGSKTA
Sbjct: 361 VAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTNVDIGKLMSAGDFIGKQLGRPSGSKTA 420

Query: 414 IALNRIAADASKI 426
           IALNR+ ADASKI
Sbjct: 421 IALNRVTADASKI 433

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84453198|dbj|BAE71196.1| putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/433 (76%), Positives = 370/433 (85%), Gaps = 7/433 (1%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSM+T+DR+QRFSS  CRP  D +GMG+C+IEG SCSTSNS  ED +
Sbjct: 1   MSSLEEPLGFDKLPSMNTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCSEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG-------SACDIYNSNCNDKDIR 113
            YT E +PW+R TRDMS  DSFS++T   GRN   FG       ++   Y+   N+KD++
Sbjct: 61  GYTAETYPWKRQTRDMSRRDSFSQKTTIKGRNSMKFGIVDNSFYTSDYQYSQKPNNKDMQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  K +KG+P FVKIVEVGPRDGLQNEKN V T VK+ELI RL S+GL V+EATSFVSP
Sbjct: 121 DMAYKVMKGMPGFVKIVEVGPRDGLQNEKNMVSTDVKIELIHRLASTGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLKGFEAAIAAGA+EVA+FASASE+FSKSNI
Sbjct: 181 KWVPQLADAKDVMKAVHNLGGIRLPVLTPNLKGFEAAIAAGAREVAVFASASESFSKSNI 240

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NCSIE+SL RYRAV  AAK LSIPVRGYVSCVVGCPVEG++ PSKVAYVAKEL+DMGCFE
Sbjct: 241 NCSIEESLARYRAVTSAAKALSIPVRGYVSCVVGCPVEGSVSPSKVAYVAKELYDMGCFE 300

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIGVGTPGTVVPML AVMAVVP EKLAVH HDTYGQSL NIL+SLQMGIS VD S
Sbjct: 301 ISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVHFHDTYGQSLSNILVSLQMGISAVDSS 360

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           VAGLGGCPYAKGASGNVATEDVVYML+GLGV+TNVD+ KLM AGDFI KHLGRPSGSKTA
Sbjct: 361 VAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDIEKLMSAGDFIGKHLGRPSGSKTA 420

Query: 414 IALNRIAADASKI 426
           IAL+R+ AD+SKI
Sbjct: 421 IALSRVTADSSKI 433

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444847|ref|XP_004140185.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cucumis sativus] gi|449481007|ref|XP_004156054.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cucumis sativus]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/435 (76%), Positives = 367/435 (84%), Gaps = 12/435 (2%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSMSTIDRIQRFSS+ACRP GD MGMG CWI+G   S+SNS  E YD
Sbjct: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSSACRPIGDDMGMGICWIQGGRSSSSNSCKE-YD 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSA--CDI-------YNSNCNDKD 111
           E   + FPWRRH ++ S     +RRT S G   K+F S   C+        Y +     +
Sbjct: 60  ENGGDTFPWRRHRKNTSQNGFVNRRTTSAGS--KIFASENFCESHCSPGHEYKTKSTSDN 117

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           I+ +TNKFLK IP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVSSGLPVVEATSFV
Sbjct: 118 IQHMTNKFLKDIPKFVKIVEVGPRDGLQNEKNMVPTSVKVELIHRLVSSGLPVVEATSFV 177

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           SP  VPQL+DA +VMEAVR+LEGARLPVLTPNLK F AAIAAGAKEVA+FASASE+FSK+
Sbjct: 178 SPTRVPQLSDAAEVMEAVRNLEGARLPVLTPNLKSFRAAIAAGAKEVAVFASASESFSKA 237

Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
           NINCSIE+SL RYRAV  AAK L+IPVRGYVSCVVGCP EGA+ PS VAYVAKEL++MGC
Sbjct: 238 NINCSIEESLDRYRAVTSAAKELAIPVRGYVSCVVGCPTEGAVSPSNVAYVAKELYEMGC 297

Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
           FEISLGDTIGV TPGTVVPMLEAVM VVPV+KLAVH HDTYGQSLPNILISLQMGIST+D
Sbjct: 298 FEISLGDTIGVATPGTVVPMLEAVMGVVPVDKLAVHFHDTYGQSLPNILISLQMGISTID 357

Query: 352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            SVAGLGGCPYAKGA+GNVATEDVVYML GLG++TNVDL K+M AG+FIN HLGRPSGSK
Sbjct: 358 SSVAGLGGCPYAKGATGNVATEDVVYMLHGLGIKTNVDLAKVMSAGNFINNHLGRPSGSK 417

Query: 412 TAIALNRIAADASKI 426
           TAIALNR+AAD+SK+
Sbjct: 418 TAIALNRVAADSSKM 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683260|ref|NP_850087.1| Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|22136060|gb|AAM91612.1| putative hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|23197746|gb|AAN15400.1| putative hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|330252794|gb|AEC07888.1| Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/434 (73%), Positives = 362/434 (83%), Gaps = 9/434 (2%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+TSNS  +D  
Sbjct: 1   MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
            + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+    
Sbjct: 60  SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 119

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct: 120 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 179

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
           KWVPQLADA+DVM+AV  L+GARLPVLTPNLKGF+AA++AGAKEVAIFASASE+FS SNI
Sbjct: 180 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNI 239

Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
           NC+IE+SL+RYR VA AAK  S+PVRGYVSCVVGCPVEG + PSKVAYV KEL+DMGCFE
Sbjct: 240 NCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFE 299

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           ISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH HDTYGQ+L NIL+SLQMGIS VD S
Sbjct: 300 ISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQMGISIVDSS 359

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
           +AGLGGCPYAKGASGNVATEDVVYML+GLGV TNVDL KL+ AGDFI+KHLGRP+GSK A
Sbjct: 360 IAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHLGRPNGSKAA 419

Query: 414 IALN-RIAADASKI 426
           +ALN RI ADASKI
Sbjct: 420 VALNRRITADASKI 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2039548	468	AT2G26800 [Arabidopsis thalian	0.997	0.908	0.702	2.4e-156
UNIPROTKB|F1NWD1	298	HMGCL "Hydroxymethylglutaryl-C	0.694	0.993	0.614	2.7e-93
UNIPROTKB|F1P1E7	301	HMGCL "Hydroxymethylglutaryl-C	0.694	0.983	0.614	2.7e-93
UNIPROTKB|P35915	298	HMGCL "Hydroxymethylglutaryl-C	0.694	0.993	0.611	1.1e-92
RGD|620554	325	Hmgcl "3-hydroxymethyl-3-methy	0.713	0.935	0.588	2.4e-92
MGI|MGI:96158	325	Hmgcl "3-hydroxy-3-methylgluta	0.713	0.935	0.588	3.9e-92
UNIPROTKB|E1BU09	342	HMGCLL1 "Uncharacterized prote	0.690	0.859	0.598	5e-92
ZFIN|ZDB-GENE-040426-958	340	hmgcl "3-hydroxymethyl-3-methy	0.692	0.867	0.616	5e-92
MGI|MGI:2446108	343	Hmgcll1 "3-hydroxymethyl-3-met	0.694	0.862	0.594	6.3e-92
UNIPROTKB|Q8TB92	370	HMGCLL1 "3-hydroxymethyl-3-met	0.694	0.8	0.591	2.1e-91

TAIR|locus:2039548 AT2G26800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 305/434 (70%), Positives = 344/434 (79%)

Query:     1 MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
             MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+TSNS  +D  
Sbjct:    36 MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 94

Query:    61 EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDI-------YNSNCNDKDIR 113
              + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+    
Sbjct:    95 SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 154

Query:   114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
              I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct:   155 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 214

Query:   174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNI 233
             KWVPQLADA+DVM+AV  L+GARLPVLTPNL                  SASE+FS SNI
Sbjct:   215 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNI 274

Query:   234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
             NC+IE+SL+RYR VA AAK  S+PVRGYVSCVVGCPVEG + PSKVAYV KEL+DMGCFE
Sbjct:   275 NCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFE 334

Query:   294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
             ISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH HDTYGQ+L NIL+SLQMGIS VD S
Sbjct:   335 ISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQMGISIVDSS 394

Query:   354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTA 413
             +AGLGGCPYAKGASGNVATEDVVYML+GLGV TNVDL KL+ AGDFI+KHLGRP+GSK A
Sbjct:   395 IAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHLGRPNGSKAA 454

Query:   414 IALNR-IAADASKI 426
             +ALNR I ADASKI
Sbjct:   455 VALNRRITADASKI 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006551 "leucine metabolic process" evidence=ISS

UNIPROTKB|F1NWD1 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 182/296 (61%), Positives = 221/296 (74%)

Query:   124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
             P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD  
Sbjct:     3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62

Query:   184 DVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLVR 243
             +VM+ +  L G   PVLTPNL                  +ASE F+K NINCSIE+SL R
Sbjct:    63 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122

Query:   244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
             +  V +AA+  SIPVRGYVSCV+GCP EG I  +KVA V+K+++ MGC+EISLGDTIG+G
Sbjct:   123 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDTIGIG 182

Query:   304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
             TPG++  ML AVM  VPV  LAVH HDTYGQ+L NIL++LQMG+S VD SVAGLGGCPYA
Sbjct:   183 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPYA 242

Query:   364 KGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
             +GASGNVATED+VYML+GLG+ T VDL+KLM  G FI   L R + SK + A  R+
Sbjct:   243 QGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQAACRL 298

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|F1P1E7 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 182/296 (61%), Positives = 221/296 (74%)

Query:   124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
             P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD  
Sbjct:     6 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 65

Query:   184 DVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLVR 243
             +VM+ +  L G   PVLTPNL                  +ASE F+K NINCSIE+SL R
Sbjct:    66 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 125

Query:   244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
             +  V +AA+  SIPVRGYVSCV+GCP EG I  +KVA V+K+++ MGC+EISLGDTIG+G
Sbjct:   126 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDTIGIG 185

Query:   304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
             TPG++  ML AVM  VPV  LAVH HDTYGQ+L NIL++LQMG+S VD SVAGLGGCPYA
Sbjct:   186 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPYA 245

Query:   364 KGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
             +GASGNVATED+VYML+GLG+ T VDL+KLM  G FI   L R + SK + A  R+
Sbjct:   246 QGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQAACRL 301

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

UNIPROTKB|P35915 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 181/296 (61%), Positives = 220/296 (74%)

Query:   124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
             P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD  
Sbjct:     3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62

Query:   184 DVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLVR 243
             +VM+ +  L G   PVLTPNL                  +ASE F+K NINCSIE+SL R
Sbjct:    63 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122

Query:   244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
             +  V +AA+  SIPVRGYVSCV+GCP EG I  +KVA V+K+++ MGC+EISLGD IG+G
Sbjct:   123 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDRIGIG 182

Query:   304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
             TPG++  ML AVM  VPV  LAVH HDTYGQ+L NIL++LQMG+S VD SVAGLGGCPYA
Sbjct:   183 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPYA 242

Query:   364 KGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
             +GASGNVATED+VYML+GLG+ T VDL+KLM  G FI   L R + SK + A  R+
Sbjct:   243 QGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQAACRL 298

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=IDA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0046872 "metal ion binding" evidence=ISS

RGD|620554 Hmgcl "3-hydroxymethyl-3-methylglutaryl-CoA lyase" [Rattus norvegicus (taxid:10116)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 179/304 (58%), Positives = 223/304 (73%)

Query:   112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
             +R  +   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK++LI  L  +GLPV+EATSFV
Sbjct:    18 LRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFV 77

Query:   172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKS 231
             SPKWVPQ+AD  DV++ ++   G   PVLTPN+                  +ASE F++ 
Sbjct:    78 SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRK 137

Query:   232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
             N+NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA VAK+L+ MGC
Sbjct:   138 NVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGC 197

Query:   292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
             +EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQ+L N L++LQMG+S VD
Sbjct:   198 YEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQMGVSVVD 257

Query:   352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
              SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI + L R + SK
Sbjct:   258 SSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQALNRKTSSK 317

Query:   412 TAIA 415
              A A
Sbjct:   318 VAQA 321

GO:0000062 "fatty-acyl-CoA binding" evidence=IPI

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0001889 "liver development" evidence=IEP

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO;ISS;IDA

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0009790 "embryo development" evidence=IEA;ISO

GO:0030145 "manganese ion binding" evidence=IEA;ISO

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0042594 "response to starvation" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=ISO;ISS

GO:0046951 "ketone body biosynthetic process" evidence=ISO;IDA

GO:0051262 "protein tetramerization" evidence=IEA;ISO

GO:0070542 "response to fatty acid" evidence=IEP

MGI|MGI:96158 Hmgcl "3-hydroxy-3-methylglutaryl-Coenzyme A lyase" [Mus musculus (taxid:10090)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 179/304 (58%), Positives = 221/304 (72%)

Query:   112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
             +R ++   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFV
Sbjct:    18 LRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFV 77

Query:   172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKS 231
             SPKWVPQ+AD  DV++ ++   G   PVLTPN+                  + SE F++ 
Sbjct:    78 SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTRK 137

Query:   232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
             N NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA VAK+L+ MGC
Sbjct:   138 NANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGC 197

Query:   292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD 351
             +EISLGDTIGVGTPG +  ML AVM  VPV  LAVH HDTYGQ+L N L++LQMG+S VD
Sbjct:   198 YEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQMGVSVVD 257

Query:   352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
              SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI + L R + SK
Sbjct:   258 SSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIHTGVNLQKLLEAGDFICQALNRKTSSK 317

Query:   412 TAIA 415
              A A
Sbjct:   318 VAQA 321

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006637 "acyl-CoA metabolic process" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0016829 "lyase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0051262 "protein tetramerization" evidence=ISO

UNIPROTKB|E1BU09 HMGCLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 176/294 (59%), Positives = 219/294 (74%)

Query:   122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD 181
             G+P +VKIVEVGPRDGLQNEK  VPT  K+ELI RL  +GLP +E TSFVS KWVPQ+AD
Sbjct:    41 GLPEYVKIVEVGPRDGLQNEKVIVPTDTKIELINRLSKTGLPAIEVTSFVSSKWVPQMAD 100

Query:   182 ARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSL 241
              ++VM  +    G + PVLTPNL                  +ASE+FSK NINCSIE+S+
Sbjct:   101 HKEVMRGIERHPGVQYPVLTPNLKGFHSAIAAGATEVSVFGAASESFSKMNINCSIEESI 160

Query:   242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG 301
              ++  VA +A+ ++IPVRGYVSC +GCP EG I P+KVA V+K L+ MGC+EISLGDTIG
Sbjct:   161 EKFEEVAKSARNMNIPVRGYVSCALGCPYEGDITPAKVAEVSKRLYSMGCYEISLGDTIG 220

Query:   302 VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP 361
             VGTPG++  MLEAVM  +P+  LAVH HDTYGQ+L NIL ++QMG++ VD SVAGLGGCP
Sbjct:   221 VGTPGSMKRMLEAVMKEIPLSALAVHCHDTYGQALANILTAIQMGVAVVDSSVAGLGGCP 280

Query:   362 YAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
             YAKGA+GNVATEDV+YML+GLG+ T V+L  +M AG+FI   L + + SK A A
Sbjct:   281 YAKGATGNVATEDVIYMLNGLGINTGVNLYTVMEAGNFICTALNKKTNSKVAQA 334

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-958 hmgcl "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)" [Danio rerio (taxid:7955)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 182/295 (61%), Positives = 212/295 (71%)

Query:   121 KGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA 180
             + +P  VKIVEVGPRDGLQNEK  VPT VK+ LI  L  +GLPV+EATSFVSPKWVPQ+A
Sbjct:    42 QALPERVKIVEVGPRDGLQNEKTIVPTEVKIRLIDMLSEAGLPVIEATSFVSPKWVPQMA 101

Query:   181 DARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDS 240
             D  +VM  +    G   PVLTPNL                  +ASE FSK NINCS+E+S
Sbjct:   102 DQEEVMRGLHKKPGVNYPVLTPNLKGFQAAVKAGAKEVAIFGAASELFSKKNINCSVEES 161

Query:   241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI 300
             LVR+  V  AAK   + VRGYVSCV+GCP EG + PSKVA VAK L+ MGC+E+SLGDTI
Sbjct:   162 LVRFEEVMTAAKQEGVSVRGYVSCVLGCPYEGKVSPSKVAEVAKRLYSMGCYEVSLGDTI 221

Query:   301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC 360
             GVGTPG +  ML AV   +PVE LAVH HDTYGQ+L NIL++LQ G+S VD SVAGLGGC
Sbjct:   222 GVGTPGGMTEMLNAVKKELPVEALAVHCHDTYGQALANILVALQNGVSVVDSSVAGLGGC 281

Query:   361 PYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
             PYA+GASGNVATEDVVYML GLG+ T VDL +L+ AG FI   + R + SK A A
Sbjct:   282 PYAQGASGNVATEDVVYMLHGLGIHTGVDLPRLLDAGSFICHSINRRTNSKVAQA 336

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:2446108 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1" [Mus musculus (taxid:10090)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 176/296 (59%), Positives = 220/296 (74%)

Query:   120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
             L G+P +VKIVEVGPRDGLQNEK  VPT +K+ELI +L  +GL V+E TSFVS +WVPQ+
Sbjct:    41 LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQM 100

Query:   180 ADARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIED 239
             AD  +VM  +R   G R PVLTPNL                  +ASE+FSK NINCSIE+
Sbjct:   101 ADHAEVMRGIRQYPGVRYPVLTPNLQGFQHAVAAGATEIAVFGAASESFSKKNINCSIEE 160

Query:   240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
             S+ R++ V  +A+ + IPVRGYVSC +GCP EG+I P KV  V+K L+ MGC+EISLGDT
Sbjct:   161 SMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 220

Query:   300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359
             IGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +LQMGI+ VD +V+GLGG
Sbjct:   221 IGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG 280

Query:   360 CPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
             CPYAKGASGNVATED++YML+G+G+ T VDL K+M AG+FI K + + + SK A A
Sbjct:   281 CPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKVMEAGEFICKAVNKTTNSKVAQA 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q8TB92 HMGCLL1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 175/296 (59%), Positives = 218/296 (73%)

Query:   120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
             L G+P FVKIVEVGPRDGLQNEK  VPT +K+E I RL  +GL V+E TSFVS +WVPQ+
Sbjct:    71 LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQM 130

Query:   180 ADARDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIED 239
             AD  +VM+ +    G R PVLTPNL                  +ASE+FSK NINCSIE+
Sbjct:   131 ADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEE 190

Query:   240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
             S+ ++  V  +A+ ++IP RGYVSC +GCP EG+I P KV  V+K L+ MGC+EISLGDT
Sbjct:   191 SMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 250

Query:   300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG 359
             IGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +LQMGI+ VD +V+GLGG
Sbjct:   251 IGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG 310

Query:   360 CPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 415
             CPYAKGASGNVATED++YML+GLG+ T V+L K+M AGDFI K + + + SK A A
Sbjct:   311 CPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 366

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS;TAS

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0046951 "ketone body biosynthetic process" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81027	HMGCL_ARATH	4, ., 1, ., 3, ., 4	0.7373	0.9976	0.9081	yes	no
Q29448	HMGCL_BOVIN	4, ., 1, ., 3, ., 4	0.6266	0.7230	0.9476	yes	no
P97519	HMGCL_RAT	4, ., 1, ., 3, ., 4	0.6266	0.7230	0.9476	yes	no
P35914	HMGCL_HUMAN	4, ., 1, ., 3, ., 4	0.6116	0.7253	0.9507	yes	no
P35915	HMGCL_CHICK	4, ., 1, ., 3, ., 4	0.6565	0.6971	0.9966	yes	no
P38060	HMGCL_MOUSE	4, ., 1, ., 3, ., 4	0.6213	0.7253	0.9507	yes	no
Q5R9E1	HMGCL_PONAB	4, ., 1, ., 3, ., 4	0.6181	0.7253	0.9507	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.4	0.991
3rd Layer	4.1.3	0.976

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
PLN02746	347	PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyas	0.0
cd07938	274	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-	1e-169
PRK05692	287	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyas	1e-167
cd03174	265	cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas	1e-100
COG0119	409	COG0119, LeuA, Isopropylmalate/homocitrate/citrama	1e-64
pfam00682	236	pfam00682, HMGL-like, HMGL-like	2e-55
cd07937	275	cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an	6e-11
TIGR02660	365	TIGR02660, nifV_homocitr, homocitrate synthase Nif	1e-10
cd07943	263	cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo	2e-10
TIGR02090	363	TIGR02090, LEU1_arch, isopropylmalate/citramalate/	3e-10
TIGR00973	494	TIGR00973, leuA_bact, 2-isopropylmalate synthase,	8e-10
COG5016	472	COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr	1e-09
TIGR03217	333	TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat	3e-09
PRK12331	448	PRK12331, PRK12331, oxaloacetate decarboxylase; Pr	4e-09
PRK11858	378	PRK11858, aksA, trans-homoaconitate synthase; Revi	5e-09
cd07939	259	cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus	4e-08
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	1e-07
cd07940	268	cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase	4e-07
PRK12330	499	PRK12330, PRK12330, oxaloacetate decarboxylase; Pr	6e-07
PLN03228	503	PLN03228, PLN03228, methylthioalkylmalate synthase	7e-07
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-06
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	1e-06
PRK08195	337	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro	1e-06
cd07947	279	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci	2e-06
PRK14041	467	PRK14041, PRK14041, oxaloacetate decarboxylase; Pr	3e-06
cd07945	280	cd07945, DRE_TIM_CMS, Leptospira interrogans citra	6e-06
PRK09389	488	PRK09389, PRK09389, (R)-citramalate synthase; Prov	2e-05
cd07948	262	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae hom	8e-05
TIGR02146	344	TIGR02146, LysS_fung_arch, homocitrate synthase	5e-04
PRK12581	468	PRK12581, PRK12581, oxaloacetate decarboxylase; Pr	7e-04
cd07944	266	cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate	0.002

>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase

 Score =  631 bits (1629), Expect = 0.0
 Identities = 278/347 (80%), Positives = 304/347 (87%), Gaps = 1/347 (0%)

Query: 81  SFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQN 140
           S    +   G     +      Y+S+ N+  +  + NK LKG+P+FVKIVEVGPRDGLQN
Sbjct: 1   SRGSTSTVSGTLGSSWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQN 60

Query: 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL 200
           EKN VPT VKVELI+RLVSSGLPVVEATSFVSPKWVPQLADA+DVM AVR+LEGAR PVL
Sbjct: 61  EKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVL 120

Query: 201 TPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 260
           TPNLKGFEAAIAAGAKEVA+FASASE+FSKSNINCSIE+SLVRYR VA AAK  SIPVRG
Sbjct: 121 TPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180

Query: 261 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 320
           YVSCVVGCP+EG +PPSKVAYVAKEL+DMGC+EISLGDTIGVGTPGTVVPMLEAVMAVVP
Sbjct: 181 YVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVP 240

Query: 321 VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 380
           V+KLAVH HDTYGQ+L NIL+SLQMGISTVD SVAGLGGCPYAKGASGNVATEDVVYML+
Sbjct: 241 VDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLN 300

Query: 381 GLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALN-RIAADASKI 426
           GLGV TNVDL KLM AGDFI+KHLGRPSGSKTA+AL+ RI A ASKI
Sbjct: 301 GLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVALSARITAAASKI 347

Length = 347

>gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

 Score =  476 bits (1227), Expect = e-169
 Identities = 162/272 (59%), Positives = 197/272 (72%)

Query: 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA 188
           IVEVGPRDGLQNEK  +PT  K+ELI  L ++GL  +E TSFVSPKWVPQ+ADA +V+  
Sbjct: 1   IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAG 60

Query: 189 VRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVA 248
           +    G R   L PNL+G E A+AAG  EVA+F SASE FS+ NINCSI +SL R+  VA
Sbjct: 61  LPRRPGVRYSALVPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVA 120

Query: 249 HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV 308
             AK   + VRGYVS   GCP EG +PP +VA VA+ L D+GC EISLGDTIGV TP  V
Sbjct: 121 ELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQV 180

Query: 309 VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG 368
             +LEAV+   P EKLA+H HDT GQ+L NIL +L+ G+   D SV GLGGCP+A GA+G
Sbjct: 181 RRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240

Query: 369 NVATEDVVYMLSGLGVETNVDLRKLMLAGDFI 400
           NVATED+VYML G+G+ET +DL KL+ A  +I
Sbjct: 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWI 272

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274

>gnl|CDD|180206 PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional

 Score =  469 bits (1209), Expect = e-167
 Identities = 185/287 (64%), Positives = 217/287 (75%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEK  +PT  K+ LI RL ++GL  +E  SFVSPKWVPQ+ADA
Sbjct: 1   LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADA 60

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            +VM  ++   G     LTPNLKG EAA+AAGA EVA+FASASEAFS+ NINCSI +SL 
Sbjct: 61  AEVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLE 120

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+  VA AAK   + VRGYVSCV+GCP EG +PP  VA VA+ L  +GC+EISLGDTIGV
Sbjct: 121 RFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGV 180

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTPG V  +LEAV+A  P E+LA H HDTYGQ+L NI  SL+ GI+  D SV GLGGCPY
Sbjct: 181 GTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY 240

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG 409
           A GASGNVATEDV+YML GLG+ET +DL KL+ AG FI   LGRP  
Sbjct: 241 APGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287

Length = 287

>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily

 Score =  298 bits (766), Expect = e-100
 Identities = 106/273 (38%), Positives = 146/273 (53%), Gaps = 12/273 (4%)

Query: 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV 189
            +   RDGLQ+E  T  T  K+E+   L  +G+  +E  S  SPK VPQ+ D  +V+ A+
Sbjct: 1   TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAI 60

Query: 190 RDLE-GARLPVLTPN-LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAV 247
           R L    +L  L  N  KG E A+ AG  EV IF SASE  S+ N+N S E+ L      
Sbjct: 61  RKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEA 120

Query: 248 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT 307
             AAK   + V G +    GC       P  V  VAK L + G  EISL DT+G+ TP  
Sbjct: 121 IEAAKEAGLEVEGSLEDAFGCKT----DPEYVLEVAKALEEAGADEISLKDTVGLATPEE 176

Query: 308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS 367
           V  +++A+   +P   L +H H+T G ++ N L +L+ G   VD SV GLG        +
Sbjct: 177 VAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG------ERA 230

Query: 368 GNVATEDVVYMLSGLGVETNVDLRKLMLAGDFI 400
           GN ATED+V  L GLG++T +DL KL+    ++
Sbjct: 231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYV 263

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265

>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

 Score =  212 bits (542), Expect = 1e-64
 Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 13/285 (4%)

Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD 184
           + V I +   RDG Q    +     K+ + + L   G+  +EA   V+     +   A  
Sbjct: 1   KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIA 60

Query: 185 VMEAVRDLEGARLPVLTPNLK-GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR 243
                     A +  L   +K   EA + AG   + IF + S+   +  +  + E+ L R
Sbjct: 61  EKAG--LFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLER 118

Query: 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
                  A+   + VR           E          V K   + G   I+L DT+GV 
Sbjct: 119 AVDAVEYARDHGLEVRFSAEDATRTDPEFLAE------VVKAAIEAGADRINLPDTVGVA 172

Query: 304 TPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           TP  V  ++EA+ A VP +  L+VH H+  G ++ N L +++ G   V+ +V G+G    
Sbjct: 173 TPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIG---E 229

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP 407
             G +        + +    GV+T +DL KL  A   + +  G P
Sbjct: 230 RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIP 274

Length = 409

>gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like

 Score =  182 bits (465), Expect = 2e-55
 Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 14/249 (5%)

Query: 136 DGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDLEG 194
           DG Q          K+ + R L  +G+  +E    F+SP     +    +V++  + ++ 
Sbjct: 1   DGEQALGAAFSVEEKLAIARALDEAGVDEIEVGFPFMSPTDFESVRAIAEVLKKAK-IQA 59

Query: 195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 254
              PV        EAA  AGA  V +F + S+   K  +N   E+   R  A   AA+  
Sbjct: 60  LLRPVEHDIDAAVEAAKGAGADRVHVFIATSDLHRKYKLNKDREEVADRAVAAVEAARSA 119

Query: 255 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 314
            I V       +GC   G    + +  V +   + G   I++ DT+GV TP     ++ A
Sbjct: 120 GIDVE------LGCEDAGRTDLAFLIEVVEVAQEAGATRINIADTVGVLTPNEAADLISA 173

Query: 315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED 374
           +   VP   + VH H+  G ++ N L +++ G   VD +V GLG        +GN A E+
Sbjct: 174 LKDRVPPVIIEVHCHNDLGMAVANSLAAVEAGADRVDGTVNGLG------ERAGNAALEE 227

Query: 375 VVYMLSGLG 383
           +V  L  LG
Sbjct: 228 LVAALEVLG 236

This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236

>gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

 Score = 62.4 bits (153), Expect = 6e-11
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 270 VEGAI-----PPSKVAY---VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV 321
           VEGAI     P   + Y   +AKEL DMG   I + D  G+ TP     +++A+   V +
Sbjct: 134 VEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGL 193

Query: 322 EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG 381
             + +H HDT G ++   L + + G+  VD +++ L G       +   +TE +V  L G
Sbjct: 194 P-IHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGG------TSQPSTESMVAALRG 246

Query: 382 LGVETNVDLRKL 393
            G +T +DL KL
Sbjct: 247 TGRDTGLDLEKL 258

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275

>gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 26/278 (9%)

Query: 135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA-RDVMEAVRDLE 193
           RDG Q          K+ + R L  +G+  +E         +P + +  R V+ A+  L 
Sbjct: 10  RDGEQAPGVAFTAAEKLAIARALDEAGVDELEVG-------IPAMGEEERAVIRAIVAL- 61

Query: 194 GARLPVLT---PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA 250
           G    ++          EAA   G   V I    S+   ++ +       L R   +   
Sbjct: 62  GLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSF 121

Query: 251 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVP 310
           A+   +    +VS  VG        P  +  +A+   + G       DT+G+  P +   
Sbjct: 122 ARDRGL----FVS--VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYE 175

Query: 311 MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNV 370
           ++ A+   V +  L +H H+  G +  N L +++ G + V+ +V GLG        +GN 
Sbjct: 176 LVRALRQAVDLP-LEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG------ERAGNA 228

Query: 371 ATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRP 407
           A E+V   L  L G +T +D  +L      + +  GRP
Sbjct: 229 ALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRP 266

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365

>gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 333
             P ++A  AK +   G   + + D+ G   P  V   + A+   +    +  H H+  G
Sbjct: 138 ASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197

Query: 334 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
            ++ N L +++ G + +D S+AGLG        +GN   E +V +L  +G+ET +DL KL
Sbjct: 198 LAVANSLAAVEAGATRIDGSLAGLGAG------AGNTPLEVLVAVLERMGIETGIDLYKL 251

Query: 394 MLAGDFI 400
           M A + +
Sbjct: 252 MDAAEDL 258

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263

>gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 70/278 (25%), Positives = 116/278 (41%), Gaps = 38/278 (13%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-------FVSPKWVPQL 179
           V I +   RDG Q    ++    KVE+ R+L   G+ V+EA         F + K + Q 
Sbjct: 1   VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE 60

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
               ++    R L+           K  + AI  G   +  F + S    K  +  S ++
Sbjct: 61  GLNAEICSLARALK-----------KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDE 109

Query: 240 SL-VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--PPSKVAYVAKELHDMGCFEISL 296
            L     AV +A +       G +   V    E A       +  V K   + G   I++
Sbjct: 110 VLEKAVEAVEYAKE------HGLI---VEFSAEDATRTDIDFLIKVFKRAEEAGADRINI 160

Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356
            DT+GV TP  +  +++ +   V +  ++VH H+ +G +  N +  ++ G   V  +V G
Sbjct: 161 ADTVGVLTPQKMEELIKKLKENVKLP-ISVHCHNDFGLATANSIAGVKAGAEQVHVTVNG 219

Query: 357 LGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKL 393
           +G        +GN A E+VV  L  L GV+T +   KL
Sbjct: 220 IG------ERAGNAALEEVVMALKYLYGVKTKIKTEKL 251

Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363

>gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 68/302 (22%), Positives = 127/302 (42%), Gaps = 33/302 (10%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
           + I +   RDG Q+   ++    K+++   L   G+ ++EA   VS        D   V 
Sbjct: 2   IIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQ 56

Query: 187 EAVRDLEGARLPVLTPNLKG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
              R ++  R+  L   ++       EA   A    +  F + S    +  +  + ++ L
Sbjct: 57  RIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVL 116

Query: 242 VRY-RAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
            R    V +A        + +   V   C   G      +A + +   + G   I++ DT
Sbjct: 117 ERAVGMVKYA--------KNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDT 168

Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 356
           +G   P     +++ +   VP ++K  L+VH H+  G ++ N L ++Q G   V+C++ G
Sbjct: 169 VGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTING 228

Query: 357 LGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLMLAGDFINKHLGRPSGSKT 412
           +G        +GN A E+VV  L      LGVET ++ +++      +++  G P     
Sbjct: 229 IG------ERAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNK 282

Query: 413 AI 414
           AI
Sbjct: 283 AI 284

This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494

>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           +AKEL +MG   I + D  G+ TP     +++A+   +PV  + +H H T G +    L 
Sbjct: 161 LAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLK 219

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 401
           +++ G+  +D +++     P + G S   ATE +V  L G G +T +DL  L    ++  
Sbjct: 220 AVEAGVDGIDTAIS-----PLSGGTS-QPATETMVAALRGTGYDTGLDLELLEEIAEYFR 273

Query: 402 K 402
           +
Sbjct: 274 E 274

Length = 472

>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTY 332
            PP K+A  AK +   G   + + D+ G   P  V   + A+ AV+ P  ++  H H   
Sbjct: 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199

Query: 333 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRK 392
             ++ N + +++ G + +D S+ GLG      GA GN   E  V +L  LG  T  DL K
Sbjct: 200 SLAVANSIAAIEAGATRIDASLRGLGA-----GA-GNAPLEVFVAVLDRLGWNTGCDLFK 253

Query: 393 LMLAGDFI 400
           LM A + I
Sbjct: 254 LMDAAEDI 261

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated [Energy metabolism, Other]. Length = 333

>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           +AKE+ +MG   I + D  G+ TP     +++ +   V V  L VH H T G +    L 
Sbjct: 159 LAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-PLEVHTHATSGIAEMTYLK 217

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 401
           +++ G   +D +++     P+A G S   ATE +V  L  LG +T +DL +L    ++ N
Sbjct: 218 AIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGLDLEELSEIAEYFN 271

Query: 402 K 402
            
Sbjct: 272 P 272

Length = 448

>gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 50/287 (17%)

Query: 124 PRFVKIVEVGPRDGLQNEKNTVPT-GV------KVELIRRLVSSGLPVVEATSFVSPKWV 176
           P+ ++IV+   RDG Q       T GV      K+ + R L   G+  +EA         
Sbjct: 2   PKDIEIVDTTLRDGEQ-------TPGVVFTNEEKLAIARMLDEIGVDQIEAG-------F 47

Query: 177 PQLADARDVMEAVRDL--EGARLPVLT---PNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
           P  A + D  EA++ +   G    +L          +A+I  G   V IF + S+   K 
Sbjct: 48  P--AVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKH 105

Query: 232 NINCSIEDSLVR-YRAVAHAAKVLSIPVRG-YVSCVVGCPVEGA--IPPSKVAYVAKELH 287
            +  + E+ L R   AV +A         G YVS       E A       +   AK   
Sbjct: 106 KLKKTREEVLERMVEAVEYAKD------HGLYVS--FS--AEDASRTDLDFLIEFAKAAE 155

Query: 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 347
           + G   +   DT+G+  P T+  +++ ++  V +  + VH H+ +G +  N L  ++ G 
Sbjct: 156 EAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP-IEVHCHNDFGMATANALAGIEAGA 214

Query: 348 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKL 393
             V  +V GLG        +GN A E+VV  L  L G++  +D  +L
Sbjct: 215 KQVHTTVNGLG------ERAGNAALEEVVMALKYLYGIDLGIDTERL 255

Length = 378

>gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 38/255 (14%)

Query: 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLT---PNLK 205
           K+ + R L  +G+  +E         +P +  + R+ + A+  L G    ++       +
Sbjct: 22  KLAIARALDEAGVDEIEVG-------IPAMGEEEREAIRAIVAL-GLPARLIVWCRAVKE 73

Query: 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA--VAHAAKVLSIPV-RG-Y 261
             EAA+  G   V I      +   S+I+  +   L + RA  +    +++     RG +
Sbjct: 74  DIEAALRCGVTAVHI------SIPVSDIH--LAHKLGKDRAWVLDQLRRLVGRAKDRGLF 125

Query: 262 VSCVVGCPVEGA--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV 319
           VS  VG   E A    P  +   A+   + G   +   DT+G+  P T   ++  + A  
Sbjct: 126 VS--VGA--EDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAAT 181

Query: 320 PVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML 379
            +  L  H H+  G +  N L +++ G + V  +V GLG        +GN A E+VV  L
Sbjct: 182 DLP-LEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG------ERAGNAALEEVVMAL 234

Query: 380 SGL-GVETNVDLRKL 393
             L G +T +D  +L
Sbjct: 235 KHLYGRDTGIDTTRL 249

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 259

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           +A+EL +MG   I + D  G+ TP     ++ A+     +  + +H H T G +   +L 
Sbjct: 154 LAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLP-VHLHSHATTGMAEMALLK 212

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 401
           +++ G   +D +++ +       G + +  TE +V  L G G +T +D+  L+    +  
Sbjct: 213 AIEAGADGIDTAISSM------SGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFR 266

Query: 402 K 402
           +
Sbjct: 267 E 267

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEK--LAVHLHDTYGQSLPNILISLQMGISTVD 351
           I++ DT+G  TP     +++ +   VP  K  ++VH H+  G ++ N L +++ G   V+
Sbjct: 160 INIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVE 219

Query: 352 CSVAGLGGCPYAKGASGNVATEDVV----YMLSGLGVETNVDLRKLM 394
           C++ G+G        +GN A E+VV          GVET +D  +L 
Sbjct: 220 CTINGIG------ERAGNAALEEVVMALKTRYDYYGVETGIDTEELY 260

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268

>gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVM-AVVPVEKLAVHLHDTYGQSLPNILI 341
           AK L DMG   I + D   +  P     +++ +  A     ++ +H H T G +L +++ 
Sbjct: 161 AKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 401
           +++ G+  VD +++ +   P      G+  TE +V ML G G  T +D+ +L+   D   
Sbjct: 221 AIEAGVDVVDTAISSMSLGP------GHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFK 274

Query: 402 KHLGR 406
           K   +
Sbjct: 275 KVRPK 279

Length = 499

>gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 45/306 (14%)

Query: 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRL-------VSSGLPVVEATSFVSPKWVPQ 178
           +V++++   RDG Q+   ++    K+E+ R+L       +  G P      F + K +  
Sbjct: 84  YVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTI-- 141

Query: 179 LADARDVMEAVRDLEGARLPVLTPNLK--------GFEAAIAAGAKEVAIFASASEAFSK 230
              A+ V   V D E   +PV+    +         +EA   A    +  F S S+   K
Sbjct: 142 ---AKTVGNEV-DEETGYVPVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMK 197

Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
             +  + E+ +    +    AK L     G+     GC   G      +  +  E    G
Sbjct: 198 YKLKKTKEEVIEMAVSSIRYAKSL-----GFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252

Query: 291 CFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI 347
              + + DT+G+  P   G +V  ++A    +     +VH H+  G +  N +  +  G 
Sbjct: 253 ATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGA 312

Query: 348 STVDCSVAGLGGCPYAKGASGNVATEDVV--------YMLSGLGVETNVDLRKLMLAGDF 399
             V+ ++ G+G        SGN + E+VV        Y+++  GV T +D R++M     
Sbjct: 313 RQVEVTINGIG------ERSGNASLEEVVMALKCRGAYLMN--GVYTGIDTRQIMATSKM 364

Query: 400 INKHLG 405
           + ++ G
Sbjct: 365 VQEYTG 370

Length = 503

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 19/147 (12%)

Query: 266 VGCPVEGAI--PPSKV----AYV--AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 317
            G  V+G I    S V     YV  AKEL +MGC  I + D  G+ TP       E V A
Sbjct: 135 AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAY---ELVKA 191

Query: 318 VVPVEKLAVHLH--DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV 375
           +     L V LH   T G +    L +++ G+  +D +++     P A G S    TE +
Sbjct: 192 LKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS-----PLAFGTS-QPPTESM 245

Query: 376 VYMLSGLGVETNVDLRKLMLAGDFINK 402
           V  L G   +T +DL  L    ++  +
Sbjct: 246 VAALKGTPYDTGLDLELLFEIAEYFRE 272

Length = 592

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           +AK+L DMG   + + D  G+  P     ++  +   V V  L +H H T G S   +L 
Sbjct: 160 LAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVP-LHLHCHATTGLSTATLLK 218

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
           +++ GI  VD +++ +    Y     G+ ATE +V  L G   +T +D+ KL
Sbjct: 219 AIEAGIDGVDTAISSMS-MTY-----GHSATETLVATLEGTERDTGLDILKL 264

Length = 593

>gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 7/126 (5%)

Query: 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTY 332
            PP K+A  AK +   G   + + D+ G   P  V   + A+ A +  + ++  H H+  
Sbjct: 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200

Query: 333 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRK 392
           G  + N L +++ G + +D S+AGLG      GA GN   E +V +L  +G ET VDL K
Sbjct: 201 GLGVANSLAAVEAGATRIDGSLAGLGA-----GA-GNTPLEVLVAVLDRMGWETGVDLYK 254

Query: 393 LMLAGD 398
           LM A +
Sbjct: 255 LMDAAE 260

Length = 337

>gnl|CDD|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 30/218 (13%)

Query: 183 RDVMEAVRDLEGARLPVLT----PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE 238
           R+ +EA  D  G + P +T     N +  +     G KE  I  S S+      +  + E
Sbjct: 53  REAVEACLDR-GYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTRE 111

Query: 239 DSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE----- 293
           +++ +Y  +   A    I  R ++  +    + G + P        +L  +         
Sbjct: 112 EAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLP-----FVNKLMKLSKESGIPVK 166

Query: 294 ISLGDTIGVGTPGTVVPMLEAV---------MAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
           I L DT+G G P     +  +V            VP E L  H H+ + +++ N + +  
Sbjct: 167 IRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL 226

Query: 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 382
            G S V+C++ G+G        +GN   E +V   + L
Sbjct: 227 YGASWVNCTLLGIG------ERTGNCPLEAMVIEYAQL 258

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 279

>gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 21/147 (14%)

Query: 267 GCPVEGAI-----PPSKVAY---VAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAV 315
           G  V+GAI     P   + Y    A+EL DMG   I + D  G+ TP     +V  L+  
Sbjct: 135 GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK 194

Query: 316 MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV 375
             V PVE   VH H T G +    L +++ G    D +++     P++ G S     E +
Sbjct: 195 FGV-PVE---VHSHCTTGLASLAYLAAVEAGADMFDTAIS-----PFSMGTS-QPPFESM 244

Query: 376 VYMLSGLGVETNVDLRKLMLAGDFINK 402
            Y     G ET+ D + L    ++  K
Sbjct: 245 YYAFRENGKETDFDRKALKFLVEYFTK 271

Length = 467

>gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 335
           P  V  +   L D+    I L DT+G+ +P      +  ++   P      H H+ Y  +
Sbjct: 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLA 205

Query: 336 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKL 393
           + N+L +++ GI  +  +V GLG        +GN     V+ +L   L V+TN+D ++L
Sbjct: 206 VANVLAAVKAGIKGLHTTVNGLG------ERAGNAPLASVIAVLKDKLKVKTNIDEKRL 258

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280

>gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK--LAVHLHDTYGQSLPNI 339
           + K   + G   I   DT+G+ TP       E    +  + K  +++H H+ +G ++ N 
Sbjct: 148 LYKAGIEAGADRICFCDTVGILTPEK---TYELFKRLSELVKGPVSIHCHNDFGLAVANT 204

Query: 340 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKL 393
           L +L  G   V  ++ G+G        +GN + E+VV  L  L  VET + L +L
Sbjct: 205 LAALAAGADQVHVTINGIG------ERAGNASLEEVVMALKHLYDVETGIKLEEL 253

Length = 488

>gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 23/238 (9%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
            KI++   R+G Q       T  K+E+ + L + G+  +E TS   SP+       +R  
Sbjct: 1   FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPAASPQ-------SRAD 53

Query: 186 MEAVRDLEGARLPVLTP---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            EA+  L G +  +LT    ++     A+  G   V +    S    +++   SI + + 
Sbjct: 54  CEAIAKL-GLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIE 112

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--PPSKVAYVAKELHDMGCFEISLGDTI 300
               V    K   I VR   S       E +       +  V + +  +G   + + DT+
Sbjct: 113 SAVEVIEFVKSKGIEVR--FSS------EDSFRSDLVDLLRVYRAVDKLGVNRVGIADTV 164

Query: 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 358
           G+ TP  V  ++  +  VV  + +  H H+  G ++ N   +L+ G + +D +V G+G
Sbjct: 165 GIATPRQVYELVRTLRGVVSCD-IEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIG 221

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 262

>gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 40/239 (16%)

Query: 135 RDGLQNEKNTVPTGVKVELIRRLVSSGL-------PVVEATSFVSPKWVPQLADARDVME 187
           R+G Q       T  K+E+ + L   G+       P     S +  + +  L    +++ 
Sbjct: 7   REGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRIDIEIIASLGLKANIVT 66

Query: 188 AVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAV 247
            +R             L   + A+  G   + IF   S+    +      +  L   R  
Sbjct: 67  HIRCR-----------LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARET 115

Query: 248 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY--------VAKELHDMGCFEISLGDT 299
              AK   + VR                              + + +   G   + + DT
Sbjct: 116 IEYAKSAGLEVR--------------FSAEDTFRSELADLLSIYETVGVFGVDRVGIADT 161

Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 358
           +G   P  V  ++  V+ VVP   + +H H+  G ++ N   +++ G + VD +V G+G
Sbjct: 162 VGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIG 220

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. Length = 344

>gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           + KEL +MG   I + D  G+ TP     ++  + A+  +  L VH H T G S    L 
Sbjct: 168 LVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLA 226

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 389
           +++ G   +D +++     P+++G S   ATE +   L   G +  +D
Sbjct: 227 AVEAGADRIDTALS-----PFSEGTS-QPATESMYLALKEAGYDITLD 268

Length = 468

>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMA-VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 352
             + D+ G   P  +  ++  + + +    KL  H H+    +L N L ++++G+  +D 
Sbjct: 155 FYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214

Query: 353 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 404
           +V G+G     +GA GN+ TE ++  L+        +L  ++   + I++++
Sbjct: 215 TVYGMG-----RGA-GNLPTELLLDYLNNK-FGKKYNLEPVL---ELIDEYI 256

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
PLN02746	347	hydroxymethylglutaryl-CoA lyase	100.0
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	100.0
KOG2368	316	consensus Hydroxymethylglutaryl-CoA lyase [Energy	100.0
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	100.0
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	100.0
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	100.0
PRK00915	513	2-isopropylmalate synthase; Validated	100.0
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	100.0
PLN03228	503	methylthioalkylmalate synthase; Provisional	100.0
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	100.0
PRK09389	488	(R)-citramalate synthase; Provisional	100.0
PLN02321	632	2-isopropylmalate synthase	100.0
COG0119	409	LeuA Isopropylmalate/homocitrate/citramalate synth	100.0
PRK03739	552	2-isopropylmalate synthase; Validated	100.0
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	100.0
TIGR00970	564	leuA_yeast 2-isopropylmalate synthase, yeast type.	100.0
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	100.0
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	100.0
PRK14847	333	hypothetical protein; Provisional	100.0
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	100.0
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	100.0
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	100.0
KOG2367	560	consensus Alpha-isopropylmalate synthase/homocitra	100.0
cd07942	284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	100.0
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	100.0
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	100.0
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	100.0
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	100.0
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	100.0
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	100.0
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	100.0
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	100.0
PRK12331	448	oxaloacetate decarboxylase; Provisional	100.0
PRK12330	499	oxaloacetate decarboxylase; Provisional	100.0
PRK14041	467	oxaloacetate decarboxylase; Provisional	100.0
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	100.0
PRK09282	592	pyruvate carboxylase subunit B; Validated	100.0
PRK14040	593	oxaloacetate decarboxylase; Provisional	100.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	100.0
PRK12581	468	oxaloacetate decarboxylase; Provisional	100.0
PRK14042	596	pyruvate carboxylase subunit B; Provisional	100.0
PRK12999	1146	pyruvate carboxylase; Reviewed	100.0
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	100.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	100.0
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.95
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	99.91
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	98.66
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.29
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	98.26
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	98.26
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.17
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	98.15
PRK07094	323	biotin synthase; Provisional	98.12
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.1
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	98.06
PLN02591	250	tryptophan synthase	97.93
PRK06256	336	biotin synthase; Validated	97.92
PLN02389	379	biotin synthase	97.92
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	97.9
PRK08445	348	hypothetical protein; Provisional	97.9
PRK07360	371	FO synthase subunit 2; Reviewed	97.85
PRK15108	345	biotin synthase; Provisional	97.84
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	97.8
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	97.73
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.71
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	97.69
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	97.69
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	97.67
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.63
PRK08444	353	hypothetical protein; Provisional	97.63
PRK07084	321	fructose-bisphosphate aldolase; Provisional	97.62
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	97.61
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	97.58
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.58
PRK08185	283	hypothetical protein; Provisional	97.57
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.57
PRK07315	293	fructose-bisphosphate aldolase; Provisional	97.54
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.47
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	97.46
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	97.46
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.45
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.44
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	97.4
PRK05835	307	fructose-bisphosphate aldolase; Provisional	97.37
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.35
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	97.35
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	97.34
PRK07709	285	fructose-bisphosphate aldolase; Provisional	97.33
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	97.33
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.31
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	97.31
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	97.31
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.31
PRK05927	350	hypothetical protein; Provisional	97.28
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	97.25
PRK08508	279	biotin synthase; Provisional	97.25
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.24
PRK06801	286	hypothetical protein; Provisional	97.24
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	97.21
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	97.18
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.16
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	97.15
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.14
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.13
TIGR03550	322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	97.04
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	97.04
PLN02428	349	lipoic acid synthase	97.02
PRK09856	275	fructoselysine 3-epimerase; Provisional	96.97
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	96.96
PRK05926	370	hypothetical protein; Provisional	96.91
PRK09197	350	fructose-bisphosphate aldolase; Provisional	96.91
PRK06245	336	cofG FO synthase subunit 1; Reviewed	96.88
PRK06806	281	fructose-bisphosphate aldolase; Provisional	96.84
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	96.83
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.83
PTZ00413	398	lipoate synthase; Provisional	96.8
PRK15452	443	putative protease; Provisional	96.8
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	96.78
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	96.78
PRK12928	290	lipoyl synthase; Provisional	96.75
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	96.7
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.68
PRK09234	843	fbiC FO synthase; Reviewed	96.63
PRK06267	350	hypothetical protein; Provisional	96.61
COG1060	370	ThiH Thiamine biosynthesis enzyme ThiH and related	96.61
PLN02858	1378	fructose-bisphosphate aldolase	96.61
PRK09997	258	hydroxypyruvate isomerase; Provisional	96.59
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	96.58
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	96.58
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	96.57
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	96.56
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.53
COG2896	322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	96.52
COG0826	347	Collagenase and related proteases [Posttranslation	96.52
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	96.51
PLN02951	373	Molybderin biosynthesis protein CNX2	96.5
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	96.48
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	96.46
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	96.4
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	96.35
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	96.34
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	96.32
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	96.25
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.24
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	96.22
PRK05481	289	lipoyl synthase; Provisional	96.22
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	96.21
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.19
PRK01060	281	endonuclease IV; Provisional	96.16
PRK08005	210	epimerase; Validated	96.16
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	96.14
TIGR03470	318	HpnH hopanoid biosynthesis associated radical SAM	96.14
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	96.12
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	96.12
PRK11613	282	folP dihydropteroate synthase; Provisional	96.11
PRK07226	267	fructose-bisphosphate aldolase; Provisional	96.07
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.04
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.02
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	96.02
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	96.01
PRK09989	258	hypothetical protein; Provisional	96.01
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	95.98
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	95.94
TIGR00284	499	dihydropteroate synthase-related protein. This pro	95.91
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	95.86
TIGR01210	313	conserved hypothetical protein TIGR01210. This fam	95.86
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	95.76
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	95.76
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	95.75
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.71
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	95.7
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	95.7
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	95.7
TIGR03586	327	PseI pseudaminic acid synthase.	95.67
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	95.63
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	95.58
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	95.58
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	95.57
COG1082	274	IolE Sugar phosphate isomerases/epimerases [Carboh	95.55
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.54
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	95.52
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	95.52
PLN02334	229	ribulose-phosphate 3-epimerase	95.51
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.48
PRK13753	279	dihydropteroate synthase; Provisional	95.47
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.45
PRK08227	264	autoinducer 2 aldolase; Validated	95.44
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	95.44
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	95.37
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	95.37
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	95.32
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	95.3
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	95.27
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	95.26
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.17
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	95.16
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	95.15
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	95.11
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	95.11
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.98
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	94.87
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	94.87
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	94.78
PRK09234	843	fbiC FO synthase; Reviewed	94.78
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	94.77
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	94.74
PRK06852	304	aldolase; Validated	94.73
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.73
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	94.73
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	94.73
cd00423	258	Pterin_binding Pterin binding enzymes. This family	94.72
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	94.69
PRK13347	453	coproporphyrinogen III oxidase; Provisional	94.67
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.67
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.65
TIGR02668	302	moaA_archaeal probable molybdenum cofactor biosynt	94.6
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	94.58
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.56
TIGR01290	442	nifB nitrogenase cofactor biosynthesis protein Nif	94.53
PRK13523	337	NADPH dehydrogenase NamA; Provisional	94.48
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	94.45
PRK14057	254	epimerase; Provisional	94.45
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	94.43
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.4
TIGR01579	414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	94.4
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	94.37
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	94.34
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	94.33
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	94.32
PRK08446	350	coproporphyrinogen III oxidase; Provisional	94.27
PRK12677	384	xylose isomerase; Provisional	94.27
TIGR00538	455	hemN oxygen-independent coproporphyrinogen III oxi	94.25
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	94.25
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	94.16
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	94.14
PRK09249	453	coproporphyrinogen III oxidase; Provisional	94.09
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.02
PRK09358	340	adenosine deaminase; Provisional	93.97
PRK05799	374	coproporphyrinogen III oxidase; Provisional	93.94
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	93.91
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	93.91
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	93.87
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	93.7
PRK05628	375	coproporphyrinogen III oxidase; Validated	93.69
PRK08599	377	coproporphyrinogen III oxidase; Provisional	93.68
PRK05660	378	HemN family oxidoreductase; Provisional	93.68
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	93.62
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	93.62
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	93.62
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	93.59
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	93.58
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.58
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.52
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	93.51
PRK14338	459	(dimethylallyl)adenosine tRNA methylthiotransferas	93.49
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	93.42
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	93.4
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	93.39
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	93.38
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	93.37
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	93.36
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	93.3
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	93.29
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	93.28
PRK13745	412	anaerobic sulfatase-maturase; Provisional	93.26
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	93.19
PRK14332	449	(dimethylallyl)adenosine tRNA methylthiotransferas	93.18
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	93.16
TIGR03822	321	AblA_like_2 lysine-2,3-aminomutase-related protein	93.15
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	93.12
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	93.06
PRK06294	370	coproporphyrinogen III oxidase; Provisional	93.05
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	93.03
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	92.98
TIGR00089	429	RNA modification enzyme, MiaB family. This subfami	92.97
PRK14325	444	(dimethylallyl)adenosine tRNA methylthiotransferas	92.94
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	92.91
PRK05904	353	coproporphyrinogen III oxidase; Provisional	92.9
COG0535	347	Predicted Fe-S oxidoreductases [General function p	92.82
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	92.81
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.79
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	92.72
PRK14334	440	(dimethylallyl)adenosine tRNA methylthiotransferas	92.71
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	92.69
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	92.63
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	92.59
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	92.57
PLN02623	581	pyruvate kinase	92.55
PRK08207	488	coproporphyrinogen III oxidase; Provisional	92.53
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	92.5
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	92.45
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	92.41
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	92.41
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	92.38
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	92.32
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	92.23
PRK14340	445	(dimethylallyl)adenosine tRNA methylthiotransferas	92.22
PRK10605	362	N-ethylmaleimide reductase; Provisional	92.13
PRK08208	430	coproporphyrinogen III oxidase; Validated	92.12
PRK05835	307	fructose-bisphosphate aldolase; Provisional	92.11
PRK07379	400	coproporphyrinogen III oxidase; Provisional	92.08
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	92.07
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	92.06
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	92.04
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	92.04
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	92.01
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	91.96
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	91.94
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	91.93
PRK07094	323	biotin synthase; Provisional	91.92
COG3473	238	Maleate cis-trans isomerase [Secondary metabolites	91.9
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	91.9
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	91.87
COG3623	287	SgaU Putative L-xylulose-5-phosphate 3-epimerase [	91.85
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	91.81
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	91.74
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	91.67
PRK14331	437	(dimethylallyl)adenosine tRNA methylthiotransferas	91.63
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	91.54
PLN02591	250	tryptophan synthase	91.53
PRK14339	420	(dimethylallyl)adenosine tRNA methylthiotransferas	91.52
PTZ00372	413	endonuclease 4-like protein; Provisional	91.52
PRK14335	455	(dimethylallyl)adenosine tRNA methylthiotransferas	91.51
PRK14337	446	(dimethylallyl)adenosine tRNA methylthiotransferas	91.5
TIGR01430	324	aden_deam adenosine deaminase. This family include	91.44
PRK14336	418	(dimethylallyl)adenosine tRNA methylthiotransferas	91.42
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	91.4
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	91.31
PRK14327	509	(dimethylallyl)adenosine tRNA methylthiotransferas	91.22
PRK07360	371	FO synthase subunit 2; Reviewed	91.21
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	91.19
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	91.16
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	91.13
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	91.12
PF01702	238	TGT: Queuine tRNA-ribosyltransferase; InterPro: IP	91.02
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	90.97
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	90.96
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	90.96
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	90.95
PRK15108	345	biotin synthase; Provisional	90.92
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	90.89
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	90.88
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	90.88
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	90.83
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	90.79
PRK14330	434	(dimethylallyl)adenosine tRNA methylthiotransferas	90.79
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	90.77
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	90.77
TIGR03581	236	EF_0839 conserved hypothetical protein EF_0839/AHA	90.76
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	90.74
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	90.73
PRK10481	224	hypothetical protein; Provisional	90.73
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	90.66
PRK15063	428	isocitrate lyase; Provisional	90.54
PRK13758	370	anaerobic sulfatase-maturase; Provisional	90.51
PRK08508	279	biotin synthase; Provisional	90.49
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	90.43
PRK14024	241	phosphoribosyl isomerase A; Provisional	90.31
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	90.3
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	90.3
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	90.29
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	90.28
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	90.28
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	90.26
TIGR01431	479	adm_rel adenosine deaminase-related growth factor.	90.26
PRK03170	292	dihydrodipicolinate synthase; Provisional	90.2
TIGR01125	430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	90.17
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	90.15
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	90.14
PRK06801	286	hypothetical protein; Provisional	90.14
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	90.01
TIGR01574	438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	89.95
TIGR02631	382	xylA_Arthro xylose isomerase, Arthrobacter type. T	89.91
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	89.9
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	89.9
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	89.86
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	89.82
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	89.76
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	89.75
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	89.67
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	89.63
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	89.5
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	89.45
PRK05985	391	cytosine deaminase; Provisional	89.41
PRK08185	283	hypothetical protein; Provisional	89.35
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	89.26
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	89.16
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	89.16
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	89.13
PRK14326	502	(dimethylallyl)adenosine tRNA methylthiotransferas	89.13
PRK11572	248	copper homeostasis protein CutC; Provisional	89.11
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	89.1
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	89.06
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	88.95
TIGR01064	473	pyruv_kin pyruvate kinase. This enzyme is a homote	88.94
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	88.9
PRK00112	366	tgt queuine tRNA-ribosyltransferase; Provisional	88.9
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	88.8
PRK03170	292	dihydrodipicolinate synthase; Provisional	88.8
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	88.78
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	88.77
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	88.77
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	88.77
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	88.76
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	88.63
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	88.61
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	88.53
PRK13533	487	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	88.51
PRK14041	467	oxaloacetate decarboxylase; Provisional	88.5
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	88.43
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.42
PRK14328	439	(dimethylallyl)adenosine tRNA methylthiotransferas	88.41
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	88.39
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	88.36
PRK08898	394	coproporphyrinogen III oxidase; Provisional	88.18
PRK08444	353	hypothetical protein; Provisional	88.09
PRK09058	449	coproporphyrinogen III oxidase; Provisional	88.05
PLN02417	280	dihydrodipicolinate synthase	88.03
PRK04147	293	N-acetylneuraminate lyase; Provisional	88.03
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	88.02
PF07745	332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	88.02
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	87.99
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	87.97
PF07302	221	AroM: AroM protein; InterPro: IPR010843 This famil	87.95
PRK04147	293	N-acetylneuraminate lyase; Provisional	87.95
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	87.94
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	87.94
cd06811	382	PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate	87.89
PRK09057	380	coproporphyrinogen III oxidase; Provisional	87.88
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	87.83
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	87.8
TIGR03821	321	AblA_like_1 lysine-2,3-aminomutase-related protein	87.77
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	87.76
TIGR03239	249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	87.76
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	87.73
PRK14333	448	(dimethylallyl)adenosine tRNA methylthiotransferas	87.7
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	87.63
PRK14329	467	(dimethylallyl)adenosine tRNA methylthiotransferas	87.63
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	87.56
PRK07709	285	fructose-bisphosphate aldolase; Provisional	87.42
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	87.28
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	87.24
PRK00115	346	hemE uroporphyrinogen decarboxylase; Validated	87.23
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	87.23
PRK02227	238	hypothetical protein; Provisional	87.22
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	87.19
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	87.15
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	86.93
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	86.92
TIGR01578	420	MiaB-like-B MiaB-like tRNA modifying enzyme, archa	86.89
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	86.77
PRK11613	282	folP dihydropteroate synthase; Provisional	86.75
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	86.72
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	86.7
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	86.65
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	86.63
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	86.63
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	86.61
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	86.53
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	86.5
COG0854	243	PdxJ Pyridoxal phosphate biosynthesis protein [Coe	86.49
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	86.43
PLN02389	379	biotin synthase	86.25
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	86.24
TIGR00492	367	alr alanine racemase. This enzyme interconverts L-	86.17
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	86.16
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	86.12
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	86.09
PRK05926	370	hypothetical protein; Provisional	86.04
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	86.01
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	85.99
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	85.98
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	85.9
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	85.85
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	85.82
PRK07084	321	fructose-bisphosphate aldolase; Provisional	85.82
COG3142	241	CutC Uncharacterized protein involved in copper re	85.75
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	85.71
PLN02424	332	ketopantoate hydroxymethyltransferase	85.68
TIGR03820	417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	85.57
PRK06096	284	molybdenum transport protein ModD; Provisional	85.53
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	85.5
PRK06582	390	coproporphyrinogen III oxidase; Provisional	85.45
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	85.43
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	85.4
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	85.34
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	85.33
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	85.27
TIGR01334	277	modD putative molybdenum utilization protein ModD.	85.26
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	85.11
cd06831	394	PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph	85.0
cd06819	358	PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (	84.98
PLN02951	373	Molybderin biosynthesis protein CNX2	84.97
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	84.96
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	84.83
PLN02433	345	uroporphyrinogen decarboxylase	84.81
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	84.79
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	84.64
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	84.64

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=100.00  E-value=4.9e-76  Score=592.80  Aligned_cols=313  Identities=86%  Similarity=1.292  Sum_probs=298.8

Q ss_pred             cCCCCCCchhhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCH
Q 014369          103 YNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA  182 (426)
Q Consensus       103 ~~s~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~  182 (426)
                      |.|-.|.-.++.+.++.+.+||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|||.|.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~  102 (347)
T PLN02746         23 YSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADA  102 (347)
T ss_pred             cccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccH
Confidence            33444555667778887888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       183 ~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      +++++.++..++.++.++++|.+|+++|+++|++.|++++++||.|+++|+|+|++|+++++.+++++||++|++|+++|
T Consensus       103 ~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i  182 (347)
T PLN02746        103 KDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV  182 (347)
T ss_pred             HHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            99999998877888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369          263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       263 ~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +++||||++++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|
T Consensus       183 s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA  262 (347)
T PLN02746        183 SCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVS  262 (347)
T ss_pred             EeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999987689999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  415 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv  415 (426)
                      +++||++||+|++|||||||||||+||++||+|+++|+.+|++++||+++|.++++++++.+|++++++....
T Consensus       263 ~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~  335 (347)
T PLN02746        263 LQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA  335 (347)
T ss_pred             HHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987544

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=100.00  E-value=8.5e-72  Score=551.54  Aligned_cols=287  Identities=64%  Similarity=1.041  Sum_probs=279.6

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  202 (426)
                      ||++|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+.+.++.++.++++
T Consensus         1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~   80 (287)
T PRK05692          1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP   80 (287)
T ss_pred             CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence            47789999999999999999999999999999999999999999999999999999999988888887777899999999


Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      |.+|+++|+++|++.|++++++||.|.+.|+|+|++++++++.+++++||++|+.|+++|+++|+||++++++++++.++
T Consensus        81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~  160 (287)
T PRK05692         81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV  160 (287)
T ss_pred             CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  362 (426)
                      ++.+.++|+++|+|+||+|+++|.+++++++.+++++|+.+|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus       161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpf  240 (287)
T PRK05692        161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY  240 (287)
T ss_pred             HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCC
Confidence            99999999999999999999999999999999999998778999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCC
Q 014369          363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG  409 (426)
Q Consensus       363 a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~  409 (426)
                      ||||+||++||+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus       241 a~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~  287 (287)
T PRK05692        241 APGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP  287 (287)
T ss_pred             CCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999886

>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-69  Score=500.56  Aligned_cols=304  Identities=70%  Similarity=1.062  Sum_probs=296.5

Q ss_pred             hhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh
Q 014369          112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD  191 (426)
Q Consensus       112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~  191 (426)
                      .|.+.++.++..|++++|+++.+|||.|.++..+|++.|++++++|.+.|+..||.++|++|||+|||+|..+++..+++
T Consensus         4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~   83 (316)
T KOG2368|consen    4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK   83 (316)
T ss_pred             hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence            46778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC
Q 014369          192 LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       192 ~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~  271 (426)
                      .+++++.+|+||+++++.|+++|+.+|.+|-.+||.|...|+||++||++.++.++++.|++++++|++|++++.|||+.
T Consensus        84 ~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye  163 (316)
T KOG2368|consen   84 FPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE  163 (316)
T ss_pred             CCCccccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +...|+.++++++.++++||.+|+|.||+|+.+|..+.++++.+.+.+|...|.+|||||||.|+||+|.+++.|++.||
T Consensus       164 G~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvD  243 (316)
T KOG2368|consen  164 GAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVD  243 (316)
T ss_pred             CCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehh
Confidence            99999999999999999999999999999999999999999999999997789999999999999999999999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  415 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv  415 (426)
                      .||.|||+||||+|.+||++||+++++|+.+|++|++||++|+++++++.+.+|++..++.+.+
T Consensus       244 SsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A  307 (316)
T KOG2368|consen  244 SSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQA  307 (316)
T ss_pred             hhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988875443

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=100.00  E-value=9.3e-68  Score=519.75  Aligned_cols=274  Identities=59%  Similarity=0.957  Sum_probs=266.1

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHH
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFE  208 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~  208 (426)
                      |+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+...+++++.+|+++.+|++
T Consensus         1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~   80 (274)
T cd07938           1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAE   80 (274)
T ss_pred             CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999988887777667899999999999999


Q ss_pred             HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      +|+++|++.|++++++||.|++.|+|++++++++++.+.+++||++|+.++++++++|+||++++++++++.++++.+.+
T Consensus        81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~  160 (274)
T cd07938          81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD  160 (274)
T ss_pred             HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 014369          289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG  368 (426)
Q Consensus       289 ~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG  368 (426)
                      +|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||+||||++|+|
T Consensus       161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG  240 (274)
T cd07938         161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG  240 (274)
T ss_pred             cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence            99999999999999999999999999999999789999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369          369 NVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       369 Na~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~  402 (426)
                      |++||+++++|+.+|++++||+++|.++++++++
T Consensus       241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~  274 (274)
T cd07938         241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWISE  274 (274)
T ss_pred             CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998863

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=100.00  E-value=8.8e-66  Score=526.53  Aligned_cols=284  Identities=25%  Similarity=0.331  Sum_probs=264.0

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC
Q 014369          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP  202 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~  202 (426)
                      |++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+      +..++++.+. ...+.++.++++
T Consensus         2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r   75 (378)
T PRK11858          2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSE------DEKEAIKAIAKLGLNASILALNR   75 (378)
T ss_pred             CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcCh------HHHHHHHHHHhcCCCeEEEEEcc
Confidence            567999999999999999999999999999999999999999999875431      1224555554 344577888887


Q ss_pred             C-hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          203 N-LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       203 ~-~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      + .+|++.|+++|++.|++++++||.|+++++|+|++++++++.+++++|+++|+.|.      |++||+++++++++.+
T Consensus        76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~------~~~ed~~r~~~~~l~~  149 (378)
T PRK11858         76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSAEDASRTDLDFLIE  149 (378)
T ss_pred             cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeccCCCCCHHHHHH
Confidence            5 78999999999999999999999999999999999999999999999999999887      4567899999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      +++.+.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||  
T Consensus       150 ~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe--  226 (378)
T PRK11858        150 FAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVD-IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE--  226 (378)
T ss_pred             HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc--
Confidence            999999999999999999999999999999999999984 58999999999999999999999999999999999999  


Q ss_pred             CCCCCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          362 YAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                          |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++||+|+++|+|+|||
T Consensus       227 ----raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGi  288 (378)
T PRK11858        227 ----RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGI  288 (378)
T ss_pred             ----cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccc
Confidence                9999999999999994 899999999999999999999999999999999999999999998

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=100.00  E-value=2.4e-65  Score=521.14  Aligned_cols=282  Identities=24%  Similarity=0.281  Sum_probs=263.8

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-C
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-N  203 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~  203 (426)
                      .|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|...+      +.++.++.+. ..++.++.++++ +
T Consensus         1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r~~   74 (365)
T TIGR02660         1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGE------EERAVIRAIVALGLPARLMAWCRAR   74 (365)
T ss_pred             CcEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHHHHcCCCcEEEEEcCCC
Confidence            3789999999999999999999999999999999999999999875431      1235555554 457789999996 6


Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      .+|++.++++|++.|++++++||.|++.++|+|++++++++.+++++||++|+.|.      |+++++++++++++.+++
T Consensus        75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~  148 (365)
T TIGR02660        75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELA  148 (365)
T ss_pred             HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999876      667899999999999999


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      +++.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++||||    
T Consensus       149 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe----  223 (365)
T TIGR02660       149 EVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE----  223 (365)
T ss_pred             HHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc----
Confidence            9999999999999999999999999999999999987 58999999999999999999999999999999999999    


Q ss_pred             CCCCCcccHHHHHHHH-HhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          364 KGASGNVATEDVVYML-SGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       364 ~graGNa~lEevv~~L-~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                        |+||++||+|+++| ..+|+++++|+++|.++++++++.+|+++|+++|++|+++|+|+|||
T Consensus       224 --raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGi  285 (365)
T TIGR02660       224 --RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGI  285 (365)
T ss_pred             --ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccch
Confidence              99999999999999 56899999999999999999999999999999999999999999997

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=5.2e-65  Score=538.63  Aligned_cols=287  Identities=24%  Similarity=0.320  Sum_probs=268.0

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  202 (426)
                      ||++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|||.+.+     .|.+.+.+..+..+++++.+|++
T Consensus         1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r   75 (513)
T PRK00915          1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR   75 (513)
T ss_pred             CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence            4778999999999999999999999999999999999999999999986432     24555544445667899999997


Q ss_pred             -ChhhHHHHH----HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 -NLKGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 -~~~di~~a~----~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                       +.+|+++++    ++|++.|++|+++||.|++.++|+|++++++++.+.+++||++|++|.      |++||++|++++
T Consensus        76 ~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~  149 (513)
T PRK00915         76 AVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLD  149 (513)
T ss_pred             CCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHH
Confidence             478999998    678999999999999999999999999999999999999999999886      778899999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      ++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++.+|.   .+|++|+|||+|||+||+++|+++||++||+|+
T Consensus       150 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv  229 (513)
T PRK00915        150 FLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTI  229 (513)
T ss_pred             HHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999999999999999999885   689999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHhC----CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~l----G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      +||||      |+||++||+|+++|+..    |+++++|+++|.++++++++++|+++|+++|++|+++|+|+|||
T Consensus       230 ~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGi  299 (513)
T PRK00915        230 NGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGI  299 (513)
T ss_pred             ecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccch
Confidence            99999      99999999999999764    99999999999999999999999999999999999999999997

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=100.00  E-value=1.1e-64  Score=515.97  Aligned_cols=281  Identities=24%  Similarity=0.300  Sum_probs=262.3

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-Ch
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-NL  204 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~~  204 (426)
                      |.|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++++      +..+.++.+. ..+.+++.++++ +.
T Consensus         1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~v~~~~r~~~   74 (363)
T TIGR02090         1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE------GEFEAIKKISQEGLNAEICSLARALK   74 (363)
T ss_pred             CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh------HHHHHHHHHHhcCCCcEEEEEcccCH
Confidence            679999999999999999999999999999999999999999998753      2233344443 445788999987 68


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +|+++|+++|++.|++++++||.|++.++|++++++++++.+++++||++|++|++++      +++++++++++.++++
T Consensus        75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~  148 (363)
T TIGR02090        75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFK  148 (363)
T ss_pred             HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987443      4678999999999999


Q ss_pred             HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                      ++.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe-----  222 (363)
T TIGR02090       149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE-----  222 (363)
T ss_pred             HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-----
Confidence            999999999999999999999999999999999988 58999999999999999999999999999999999999     


Q ss_pred             CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                       |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++||+|+++|+|+|||
T Consensus       223 -raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGi  284 (363)
T TIGR02090       223 -RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGI  284 (363)
T ss_pred             -ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcch
Confidence             9999999999999998 899999999999999999999999999999999999999999997

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=100.00  E-value=2.3e-64  Score=529.05  Aligned_cols=286  Identities=22%  Similarity=0.306  Sum_probs=260.9

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---------C
Q 014369          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---------G  194 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---------~  194 (426)
                      +++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|||...+   +  +.+.+.+..+..+         .
T Consensus        82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~---~--e~e~i~~i~~~~~~~~~~~~~l~  156 (503)
T PLN03228         82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSE---E--EFEAVKTIAKTVGNEVDEETGYV  156 (503)
T ss_pred             CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH---H--HHHHHHHHHHhcccccccccccc
Confidence            678999999999999999999999999999999999999999999986532   2  2333333333222         1


Q ss_pred             CcEEEEeCC-hhhHHHHHHc----CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC
Q 014369          195 ARLPVLTPN-LKGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC  268 (426)
Q Consensus       195 ~~l~~l~~~-~~di~~a~~~----Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~  268 (426)
                      ..+.+|+|+ .+|+++++++    |+++|++++++||.|+++++|+|++++++++.+++++||++|+. |.      |++
T Consensus       157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~------f~~  230 (503)
T PLN03228        157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQ------FGC  230 (503)
T ss_pred             eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------ecc
Confidence            467788886 5799999988    77899999999999999999999999999999999999999986 44      889


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      ||++|+|++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.+|   .++|++|+|||+|||+||+++|+++
T Consensus       231 EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~a  310 (503)
T PLN03228        231 EDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICA  310 (503)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999886   4679999999999999999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh------CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI  419 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~------lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v  419 (426)
                      ||++||+|++||||      |+||++||+|+++|+.      +|+++++|+++|.++++++++++|+++|+++||+|+|+
T Consensus       311 Ga~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~na  384 (503)
T PLN03228        311 GARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANC  384 (503)
T ss_pred             CCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHH
Confidence            99999999999999      9999999999999987      48899999999999999999999999999999999999


Q ss_pred             hhhccCC
Q 014369          420 AADASKI  426 (426)
Q Consensus       420 f~h~Sgi  426 (426)
                      |+|||||
T Consensus       385 F~heSGI  391 (503)
T PLN03228        385 FVHESGI  391 (503)
T ss_pred             HHhccch
Confidence            9999997

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=100.00  E-value=2.7e-64  Score=530.62  Aligned_cols=284  Identities=25%  Similarity=0.355  Sum_probs=266.2

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-Ch
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NL  204 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~  204 (426)
                      +|+|+|||||||+|.+++.|+.++|++|++.|+++||++||+|||++++     .|.+.+.+..+..++.++++|++ +.
T Consensus         1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~   75 (494)
T TIGR00973         1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE   75 (494)
T ss_pred             CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence            4789999999999999999999999999999999999999999998754     45555544445667889999998 57


Q ss_pred             hhHHHHHHc----CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 KGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ~di~~a~~~----Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +|+++++++    +.+.|++++++|+.|++.++++|++++++.+.+++++||++|..|.      |++||++|++++++.
T Consensus        76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~  149 (494)
T TIGR00973        76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLA  149 (494)
T ss_pred             HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHH
Confidence            899999887    6789999999999999999999999999999999999999999776      788999999999999


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      ++++++.++|+++|+|+||+|.++|.+++++|+.+++++|.   .+|++|+|||+|||+||+++|+++||++||+|++||
T Consensus       150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl  229 (494)
T TIGR00973       150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI  229 (494)
T ss_pred             HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence            99999999999999999999999999999999999999873   579999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHh----CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          358 GGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       358 GecP~a~graGNa~lEevv~~L~~----lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      ||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++|+++||+|+++|+|+|||
T Consensus       230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGi  296 (494)
T TIGR00973       230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGI  296 (494)
T ss_pred             cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccch
Confidence            99      9999999999999974    499999999999999999999999999999999999999999997

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>PRK09389 (R)-citramalate synthase; Provisional

Probab=100.00  E-value=6e-64  Score=527.07  Aligned_cols=283  Identities=22%  Similarity=0.304  Sum_probs=263.2

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-h
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-L  204 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~  204 (426)
                      +|+|+|||||||+|+++..|+.++|++|++.|+++||+.||+|||++++     .|.+.+.+..+...+.++.+|++. .
T Consensus         2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e~v~~i~~~~~~~~i~a~~r~~~   76 (488)
T PRK09389          2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GEREAIKAVTDEGLNAEICSFARAVK   76 (488)
T ss_pred             ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHhcCCCcEEEeecccCH
Confidence            3899999999999999999999999999999999999999999998653     344433333334456889999975 6


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +|+++++++|++.|++++++||.|++.++++|++++++.+.+++++||++|+.|++      +.+|++|++++++.++++
T Consensus        77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~------~~ed~~r~~~~~l~~~~~  150 (488)
T PRK09389         77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVEL------SGEDASRADLDFLKELYK  150 (488)
T ss_pred             HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEE------EEeeCCCCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999998884      345788999999999999


Q ss_pred             HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                      ++.++|+++|+|+||+|+++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       151 ~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE-----  224 (488)
T PRK09389        151 AGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE-----  224 (488)
T ss_pred             HHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-----
Confidence            999999999999999999999999999999999887 47999999999999999999999999999999999999     


Q ss_pred             CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                       |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++||+|+++|+|+|||
T Consensus       225 -RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGi  286 (488)
T PRK09389        225 -RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGI  286 (488)
T ss_pred             -cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchh
Confidence             9999999999999998 599999999999999999999999999999999999999999997

>PLN02321 2-isopropylmalate synthase

Probab=100.00  E-value=7.3e-64  Score=536.07  Aligned_cols=285  Identities=22%  Similarity=0.326  Sum_probs=260.8

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCC--------
Q 014369          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEG--------  194 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~--------  194 (426)
                      |++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||. +|+      |.+.+.++.+.+++        
T Consensus        84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~------D~e~vr~i~~~~~~~v~~~~~v  157 (632)
T PLN02321         84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD------DLEAVKTIAKEVGNEVDEDGYV  157 (632)
T ss_pred             CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc------HHHHHHHHHHhcccCCCccccc
Confidence            788999999999999999999999999999999999999999999974 543      55554444343333        


Q ss_pred             CcEEEEeC-ChhhHHHHHHc--CC--CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC
Q 014369          195 ARLPVLTP-NLKGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC  268 (426)
Q Consensus       195 ~~l~~l~~-~~~di~~a~~~--Gv--~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~  268 (426)
                      ..+.+|++ +.+|+++++++  ++  .+|++|+++||.|+++++|+|++++++++.+++++||++|.. |.      |++
T Consensus       158 ~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~  231 (632)
T PLN02321        158 PVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSP  231 (632)
T ss_pred             eeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------Eec
Confidence            45667776 57999999998  33  379999999999999999999999999999999999999984 44      789


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      ||++|++++++.++++++.++|+++|+|+||+|+++|.++.++|+.+++++|.   ++|++|||||+|||+||+++|+++
T Consensus       232 EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A  311 (632)
T PLN02321        232 EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA  311 (632)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999873   469999999999999999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh------CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI  419 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~------lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v  419 (426)
                      ||++||+|++||||      |+||++||+|+++|+.      +|++++||+++|.++++++++++|+++++++||||+|+
T Consensus       312 GA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~na  385 (632)
T PLN02321        312 GARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANA  385 (632)
T ss_pred             CCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccc
Confidence            99999999999999      9999999999999985      57899999999999999999999999999999999999


Q ss_pred             hhhccCC
Q 014369          420 AADASKI  426 (426)
Q Consensus       420 f~h~Sgi  426 (426)
                      |+|+|||
T Consensus       386 FaheSGI  392 (632)
T PLN02321        386 FAHESGI  392 (632)
T ss_pred             eehhcCc
Confidence            9999998

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-64  Score=516.58  Aligned_cols=285  Identities=28%  Similarity=0.358  Sum_probs=259.4

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT  201 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~  201 (426)
                      ++|+|+|+|||||+|+++..|+.++|++|+++|+++|+++||+|+|+++++.+++     +.......   ..+++.++.
T Consensus         1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~-----~~~i~~~~~~~~~~~~~~~~   75 (409)
T COG0119           1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEF-----VRAIAEKAGLFICALIAALA   75 (409)
T ss_pred             CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHH-----HHHHHHhcCcccchhhhhhH
Confidence            3689999999999999999999999999999999999999999999987654332     22222121   244556666


Q ss_pred             CCh-hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          202 PNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       202 ~~~-~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      ++. .++++++++|+++|++|.++|+.|++.++++|+++.++.+.+.++|||++|+++++      ++++.+|++++++.
T Consensus        76 ~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed~~rt~~~~l~  149 (409)
T COG0119          76 RAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAEDATRTDPEFLA  149 (409)
T ss_pred             HhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------EeeccccCCHHHHH
Confidence            665 59999999999999999999999999999999999999999999999999988873      45677899999999


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      ++++++.++|+++|+|+||+|+++|.+++++++.+++.+| ..+|++|||||+|||+||+++|+++||++||+|++|+||
T Consensus       150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE  229 (409)
T COG0119         150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE  229 (409)
T ss_pred             HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee
Confidence            9999999999999999999999999999999999999998 468999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHHh---CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          360 CPYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~---lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                            |+||+++|+++++|..   +|+++++|+.+|.++++++++.+|.++|+++||+|+|+|+|+|||
T Consensus       230 ------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGI  293 (409)
T COG0119         230 ------RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGI  293 (409)
T ss_pred             ------ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcch
Confidence                  9999999999976653   678999999999999999999999999999999999999999997

>PRK03739 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=1e-62  Score=523.79  Aligned_cols=291  Identities=18%  Similarity=0.145  Sum_probs=262.2

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH-HHHHHh-Hh-c--CCCcE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RD-L--EGARL  197 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~-~v~~~i-~~-~--~~~~l  197 (426)
                      +.+++.|+|+|||||+|+++..|++++|++|+++|+++||+.||+|||...       +.+ ++++.+ +. +  ++..+
T Consensus        27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s-------~~e~e~v~~i~~~~~~~~~~~i   99 (552)
T PRK03739         27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSAS-------QTDFDFVRELIEEGLIPDDVTI   99 (552)
T ss_pred             cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcC-------hHHHHHHHHHHHhcCCCCCCEE
Confidence            678899999999999999999999999999999999999999999986543       333 455555 43 2  46899


Q ss_pred             EEEeCChh-hHHHHHHc--CC--CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE-EEEEeeecCCCC
Q 014369          198 PVLTPNLK-GFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR-GYVSCVVGCPVE  271 (426)
Q Consensus       198 ~~l~~~~~-di~~a~~~--Gv--~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~-~~v~~~fg~pd~  271 (426)
                      .+|+|+.+ |+++|+++  ++  +.|++|+++||.|+++++++|++++++++.+++++||++|.... ..+.+.|+.+|+
T Consensus       100 ~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDa  179 (552)
T PRK03739        100 QVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESF  179 (552)
T ss_pred             EEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccC
Confidence            99999864 69999886  44  47999999999999999999999999999999999999985321 123445889999


Q ss_pred             CCCCHHHHHHHHHHHHh---CCCC---EEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHHHH
Q 014369          272 GAIPPSKVAYVAKELHD---MGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~---~Gad---~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +|++++++.++++++.+   +|++   +|+|+||+|+++|.++.++++.+++.+|   ..+|++|||||+|||+||+++|
T Consensus       180 sR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaA  259 (552)
T PRK03739        180 TGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELA  259 (552)
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHH
Confidence            99999999999999876   5655   5999999999999999999999999987   5689999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhh
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAAD  422 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h  422 (426)
                      +++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+++||||+|+|+|
T Consensus       260 v~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h  333 (552)
T PRK03739        260 LMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTA  333 (552)
T ss_pred             HHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhh
Confidence            99999999999999999      999999999999998899999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 014369          423 ASKI  426 (426)
Q Consensus       423 ~Sgi  426 (426)
                      +|||
T Consensus       334 esGi  337 (552)
T PRK03739        334 FSGS  337 (552)
T ss_pred             ccch
Confidence            9997

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=100.00  E-value=1.2e-62  Score=520.61  Aligned_cols=287  Identities=18%  Similarity=0.199  Sum_probs=260.1

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN-  203 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~-  203 (426)
                      +|+|+|||||||+|.++..|+.++|++|++.|+++||+.||+|||.+.+     .|.+.+.+..+ .+.+.++++|++. 
T Consensus         1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~~i~~~~r~~   75 (526)
T TIGR00977         1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP-----KDVQFFWQLKEMNFKNAKIVAFCSTR   75 (526)
T ss_pred             CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HHHHHHHHHHHhCCCCcEEEEEeeec
Confidence            4889999999999999999999999999999999999999999876432     24444444443 2346889999853 


Q ss_pred             --------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC
Q 014369          204 --------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       204 --------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~  275 (426)
                              ..++++++++|.+.|++|+++|+.|++.+++++++++++.+.+++++||++|+.|.+..+..|   |++|++
T Consensus        76 r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~---D~~r~~  152 (526)
T TIGR00977        76 RPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF---DGYKAN  152 (526)
T ss_pred             CCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee---ecccCC
Confidence                    235789999999999999999999999999999999999999999999999999884444322   677999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      ++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|..+|++|||||+|||+||+++|+++||++||+|++
T Consensus       153 ~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Tin  232 (526)
T TIGR00977       153 PEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTIN  232 (526)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence            99999999999999999999999999999999999999999999876699999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHh-CCCC--CCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          356 GLGGCPYAKGASGNVATEDVVYMLSG-LGVE--TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       356 GlGecP~a~graGNa~lEevv~~L~~-lG~~--~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      ||||      |+||++||+++++|+. +|++  +++|+++|.++++++++++|+++|+++|+||+++|+|+|||
T Consensus       233 GiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGi  300 (526)
T TIGR00977       233 GYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGV  300 (526)
T ss_pred             cccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccc
Confidence            9999      9999999999999985 7777  79999999999999999999999999999999999999997

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type

Probab=100.00  E-value=1.3e-62  Score=524.24  Aligned_cols=293  Identities=18%  Similarity=0.174  Sum_probs=268.9

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh--c-CCCcEEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--L-EGARLPV  199 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~--~-~~~~l~~  199 (426)
                      +.+.+.|+|||||||+|.++..|++++|++|++.|+++||++||+|||++.    + .|.+++.+.++.  + +++++.+
T Consensus        23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s----~-~D~e~v~~i~~~~l~~~~~~i~a   97 (564)
T TIGR00970        23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS----Q-TDFDFVREIIEQGAIPDDVTIQV   97 (564)
T ss_pred             cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----H-HHHHHHHHHHHhcCCCCCcEEEE
Confidence            678899999999999999999999999999999999999999999977654    2 577777777764  2 3689999


Q ss_pred             EeCChh-hHHHHHHc--CCC--EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE----EEeeecCCC
Q 014369          200 LTPNLK-GFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY----VSCVVGCPV  270 (426)
Q Consensus       200 l~~~~~-di~~a~~~--Gv~--~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~----v~~~fg~pd  270 (426)
                      |+++.+ ++++++++  +++  .|++|+++||.|++.++|+|++++++.+.+++++||++|..+..+    +.+.|+.+|
T Consensus        98 l~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed  177 (564)
T TIGR00970        98 LTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPES  177 (564)
T ss_pred             EcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEeccc
Confidence            999865 59999887  554  899999999999999999999999999999999999998754332    334578899


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC------CEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHH
Q 014369          271 EGAIPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Ga------d~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+|++++++.++++++.++|+      ++|+|+||+|+++|.+++++|+.+++.+|.   ++|++|||||+|||+||+++
T Consensus       178 ~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANsla  257 (564)
T TIGR00970       178 FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAEL  257 (564)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHH
Confidence            999999999999999999987      499999999999999999999999998863   45999999999999999999


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhh
Q 014369          342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAA  421 (426)
Q Consensus       342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~  421 (426)
                      |+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+++|+||+++|+
T Consensus       258 Av~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~  331 (564)
T TIGR00970       258 GFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYT  331 (564)
T ss_pred             HHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhh
Confidence            999999999999999999      99999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCC
Q 014369          422 DASKI  426 (426)
Q Consensus       422 h~Sgi  426 (426)
                      |+|||
T Consensus       332 h~SGi  336 (564)
T TIGR00970       332 AFSGS  336 (564)
T ss_pred             hccch
Confidence            99997

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=100.00  E-value=2.6e-62  Score=518.50  Aligned_cols=285  Identities=20%  Similarity=0.244  Sum_probs=259.5

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh--cCCCcEEEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--LEGARLPVL  200 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~--~~~~~l~~l  200 (426)
                      ||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|||...+     .|. +..+.+..  +.++++.+|
T Consensus         2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~-----~d~-~~~~~i~~~~l~~~~i~~~   75 (524)
T PRK12344          2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP-----KDT-EFFKRAKELKLKHAKLAAF   75 (524)
T ss_pred             CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh-----hHH-HHHHHHHHhCCCCcEEEEE
Confidence            6788999999999999999999999999999999999999999999976432     233 33444432  356888888


Q ss_pred             eCC---------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC--
Q 014369          201 TPN---------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP--  269 (426)
Q Consensus       201 ~~~---------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p--  269 (426)
                      ++.         ..+++.++++|++.|++++++|+.|++.++|+|++++++.+.+++++||++|++|+      |+++  
T Consensus        76 ~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~~  149 (524)
T PRK12344         76 GSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEHF  149 (524)
T ss_pred             eeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------Eccccc
Confidence            743         34678899999999999999999999999999999999999999999999999987      5556  


Q ss_pred             -CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          270 -VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       270 -d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                       |++|++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++. ++|++|+|||+|||+||+++|+++||+
T Consensus       150 ~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~-v~i~~H~HND~GlA~ANslaAi~aGa~  228 (524)
T PRK12344        150 FDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG-VPLGIHAHNDSGCAVANSLAAVEAGAR  228 (524)
T ss_pred             cccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCC
Confidence             778999999999999999999999999999999999999999999999984 589999999999999999999999999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CC--CCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccC
Q 014369          349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LG--VETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASK  425 (426)
Q Consensus       349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG--~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sg  425 (426)
                      +||+|++||||      |+||++||+|+++|+. +|  +++++|+++|.++++++++++|+++|+++||||+|+|+|+||
T Consensus       229 ~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SG  302 (524)
T PRK12344        229 QVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGG  302 (524)
T ss_pred             EEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhcc
Confidence            99999999999      9999999999999975 67  448999999999999999999999999999999999999999


Q ss_pred             C
Q 014369          426 I  426 (426)
Q Consensus       426 i  426 (426)
                      |
T Consensus       303 i  303 (524)
T PRK12344        303 I  303 (524)
T ss_pred             c
Confidence            7

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.9e-62  Score=483.42  Aligned_cols=274  Identities=22%  Similarity=0.285  Sum_probs=254.9

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHH-HhCCCCeEEEecC-CCC---CccccccCHHHHHHHhHhcCCCcEEEEeCCh
Q 014369          130 VEVGPRDGLQNEKNTVPTGVKVELIRRL-VSSGLPVVEATSF-VSP---KWVPQLADARDVMEAVRDLEGARLPVLTPNL  204 (426)
Q Consensus       130 ~D~TLRDG~Q~~~~~f~~~~ki~I~~~L-~~~Gv~~IEvG~~-~s~---~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~  204 (426)
                      +|+|||||+|.++..|++++|++|++.| +++||+.||+|+| +++   +++|++.|..++...   +++.++.+|+++.
T Consensus         1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~---~~~~~~~a~~~~~   77 (280)
T cd07945           1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGL---LDRIEVLGFVDGD   77 (280)
T ss_pred             CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhcc---ccCcEEEEecCcH
Confidence            5999999999999999999999999997 7889999999999 576   556666543322221   2367888899999


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +++++|+++|++.|++++++||.|+++++|+|++++++++.+++++||++|++|+++++. |+||.  +++++++.++++
T Consensus        78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~  154 (280)
T cd07945          78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVD  154 (280)
T ss_pred             HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998 88876  789999999999


Q ss_pred             HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                      ++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe-----  229 (280)
T cd07945         155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE-----  229 (280)
T ss_pred             HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-----
Confidence            999999999999999999999999999999999999889999999999999999999999999999999999999     


Q ss_pred             CCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCccc
Q 014369          365 GASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  415 (426)
Q Consensus       365 graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~piv  415 (426)
                       |+||++||+++++|+. +|++++||+++|.++++++++.+|+++|+++||+
T Consensus       230 -~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv  280 (280)
T cd07945         230 -RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV  280 (280)
T ss_pred             -cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence             9999999999999964 8999999999999999999999999999999996

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PRK14847 hypothetical protein; Provisional

Probab=100.00  E-value=5.5e-61  Score=479.32  Aligned_cols=279  Identities=16%  Similarity=0.148  Sum_probs=251.4

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPV  199 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~  199 (426)
                      +.+...|+|+|||||+|++|..|+.++|++|+++|+++||+.||+|||+.+.     .|.+.+.+.++..   .++++.+
T Consensus        29 ~~~~p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~~~~~~~~~i~~  103 (333)
T PRK14847         29 PAAAPIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDERRIPDDVTIEA  103 (333)
T ss_pred             cCCCCceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHhCCCCCCcEEEE
Confidence            4455679999999999999999999999999999999999999999997653     2344444444532   2688999


Q ss_pred             EeCC-hhhHHHHHHcCC----CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-------cEEEEEEeeec
Q 014369          200 LTPN-LKGFEAAIAAGA----KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-------PVRGYVSCVVG  267 (426)
Q Consensus       200 l~~~-~~di~~a~~~Gv----~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-------~v~~~v~~~fg  267 (426)
                      |+|. .+||+++++++.    +.|++|+++|++|++.++|++++++++++.+.|++||++|.       .|+      |+
T Consensus       104 ~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~------~~  177 (333)
T PRK14847        104 LTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYE------YS  177 (333)
T ss_pred             EecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEE------Ee
Confidence            9996 578999988765    56999999999999999999999999999999999999965       333      67


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhC-C-----CCEEEEcCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHH
Q 014369          268 CPVEGAIPPSKVAYVAKELHDM-G-----CFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPN  338 (426)
Q Consensus       268 ~pd~~r~~~~~l~~~~~~l~~~-G-----ad~I~l~DT~G~~~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~AN  338 (426)
                      .+|++|++++|+.++++.+.+. |     +++|+|+||+|+++|.+++++|+.++++++   .++|++|+|||+|||+||
T Consensus       178 ~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~AN  257 (333)
T PRK14847        178 PETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAA  257 (333)
T ss_pred             eecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHH
Confidence            7899999999999999987555 5     778999999999999999999999999875   578999999999999999


Q ss_pred             HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchh
Q 014369          339 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR  418 (426)
Q Consensus       339 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~  418 (426)
                      +++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+.+|.++++++++++|+++|+++||+|-+
T Consensus       258 slaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPivg~~  331 (333)
T PRK14847        258 AELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWLD  331 (333)
T ss_pred             HHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeecCC
Confidence            999999999999999999999      99999999999999999999999999999999999999999999999999964

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=1.7e-57  Score=443.26  Aligned_cols=255  Identities=25%  Similarity=0.307  Sum_probs=237.7

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-Chhh
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-NLKG  206 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-~~~d  206 (426)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+      +.+++++.+.. .+++++.++++ +.++
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~------~~~e~~~~l~~~~~~~~~~~~~r~~~~~   74 (259)
T cd07939           1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAMGE------EEREAIRAIVALGLPARLIVWCRAVKED   74 (259)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH------HHHHHHHHHHhcCCCCEEEEeccCCHHH
Confidence            6899999999999999999999999999999999999999864321      22356666653 56789999995 7899


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++++.++|++.|++++++|+.|++.++|+|++++++++.+++++||++|++|.      |++++.++++++++.++++++
T Consensus        75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~  148 (259)
T cd07939          75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEVA  148 (259)
T ss_pred             HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876      567889999999999999999


Q ss_pred             HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCC
Q 014369          287 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGA  366 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gr  366 (426)
                      .++|++.|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|++|||+      |
T Consensus       149 ~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------~  221 (259)
T cd07939         149 QEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------R  221 (259)
T ss_pred             HHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------c
Confidence            9999999999999999999999999999999999 68999999999999999999999999999999999999      9


Q ss_pred             CCcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       367 aGNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~  402 (426)
                      +||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus       222 aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~  258 (259)
T cd07939         222 AGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR  258 (259)
T ss_pred             ccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            9999999999999996 99999999999999999876

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.1e-56  Score=439.43  Aligned_cols=255  Identities=25%  Similarity=0.344  Sum_probs=238.5

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhH-hcCCCcEEEEeC-Chh
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPVLTP-NLK  205 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~~~  205 (426)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|+|+ +|+      | ++.++.++ ..+++++.+|++ +.+
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~~   73 (268)
T cd07940           1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVKK   73 (268)
T ss_pred             CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCHh
Confidence            5899999999999999999999999999999999999999987 442      3 35555555 468899999995 689


Q ss_pred             hHHHHHHcC----CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAG----AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~G----v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      +++.|.++|    ++.|++++++||.|+++++|++++++++.+.+++++||++|++|.      |++|+.++++++++.+
T Consensus        74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~  147 (268)
T cd07940          74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIE  147 (268)
T ss_pred             hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHH
Confidence            999999999    999999999999999999999999999999999999999999877      6778899999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +++++.++|+++|+|+||+|.++|.+++++++.+++++|+  ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus       148 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~  227 (268)
T cd07940         148 VVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE  227 (268)
T ss_pred             HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence            9999999999999999999999999999999999999986  78999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCC----CCCCcChhhHHHHHHHHHH
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLG----VETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG----~~~~iDl~~L~~la~~v~~  402 (426)
                            |+||++||+|+.+|+.+|    +++++|+++|.++++++++
T Consensus       228 ------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~  268 (268)
T cd07940         228 ------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR  268 (268)
T ss_pred             ------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence                  999999999999999876    9999999999999999863

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=5e-56  Score=434.00  Aligned_cols=258  Identities=20%  Similarity=0.231  Sum_probs=231.9

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-CChh
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLK  205 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~~~~  205 (426)
                      .+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|.   ..|++.+..+++.  +.....++.+++ ++.+
T Consensus         1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~---~~~~~~~~~~~l~--~~~~~~~v~~~~r~~~~   75 (262)
T cd07948           1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPA---ASPQSRADCEAIA--KLGLKAKILTHIRCHMD   75 (262)
T ss_pred             CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHHHHHHHH--hCCCCCcEEEEecCCHH
Confidence            369999999999999999999999999999999999999999854   3466544333332  222235666665 5789


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      |+++|+++|++.|++++++||.|++.+++++++++++.+.+++++||++|++|+++++.+      ++++++++.+++++
T Consensus        76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda------~r~~~~~l~~~~~~  149 (262)
T cd07948          76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDS------FRSDLVDLLRVYRA  149 (262)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee------CCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999777654      56679999999999


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                      +.++|+++|+|+||+|.++|.+++++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++||||      
T Consensus       150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe------  222 (262)
T cd07948         150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE------  222 (262)
T ss_pred             HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence            99999999999999999999999999999999998 68999999999999999999999999999999999999      


Q ss_pred             CCCcccHHHHHHHHHhC---CCCCCcChhhHHHHHHHHHH
Q 014369          366 ASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       366 raGNa~lEevv~~L~~l---G~~~~iDl~~L~~la~~v~~  402 (426)
                      |+||++||+|+.+|+..   |+++++|+++|.++++++++
T Consensus       223 raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~  262 (262)
T cd07948         223 RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD  262 (262)
T ss_pred             ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence            99999999999999754   67789999999999999863

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-56  Score=453.15  Aligned_cols=288  Identities=20%  Similarity=0.264  Sum_probs=267.9

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC-CCcEEEE
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL  200 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~l  200 (426)
                      ..++.++++|+|||||+|+++..|++++|++|+++|+..||++||+|||+++.     .|+++...+++..+ ...++++
T Consensus        53 ~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l  127 (560)
T KOG2367|consen   53 SDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTL  127 (560)
T ss_pred             cCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEe
Confidence            46888999999999999999999999999999999999999999999998764     46666666666555 4788999


Q ss_pred             eCC-hhhHHHHHHcCCC----EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCC
Q 014369          201 TPN-LKGFEAAIAAGAK----EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       201 ~~~-~~di~~a~~~Gv~----~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~  274 (426)
                      +|+ ..+++++++++..    +|++|+++||.|+++++++|.+|+++.+.++++.+|.+|. .++      |++++.+|+
T Consensus       128 ~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rs  201 (560)
T KOG2367|consen  128 IRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRS  201 (560)
T ss_pred             eccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccC
Confidence            997 5689999998654    5999999999999999999999999999999999999994 455      899999999


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +++|+.+++++...+|+..+.|+||+|+.+|.+++++|+.++.+.|.   ..|+.|||||+|+|+||+..++.|||++|+
T Consensus       202 e~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE  281 (560)
T KOG2367|consen  202 ELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVE  281 (560)
T ss_pred             cHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEE
Confidence            99999999999999999999999999999999999999999998874   369999999999999999999999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCC---CCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLG---VETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG---~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      +||+|+||      |+||++||+|+++|+..|   +...+|+.+|.++.++++++.++++|+++||+|.++|+|+|||
T Consensus       282 ~~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGi  353 (560)
T KOG2367|consen  282 VTINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGI  353 (560)
T ss_pred             EEeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccc
Confidence            99999999      999999999999999888   7888999999999999999999999999999999999999997

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=6.5e-56  Score=437.14  Aligned_cols=263  Identities=19%  Similarity=0.180  Sum_probs=234.9

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH-HHHHHh-Hhc---CCCcEEEEe
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RDL---EGARLPVLT  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~-~v~~~i-~~~---~~~~l~~l~  201 (426)
                      ..++|+|||||+|+++..|++++|++|++.|+++||+.||+|||       ++.+.+ ++++.+ +..   +++++.+|+
T Consensus         2 ~~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gfP-------~~~~~e~e~~~~i~~~~~~~~~~~~~al~   74 (284)
T cd07942           2 PIWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGFP-------SASQTDFDFVRELIEEDLIPDDVTIQVLT   74 (284)
T ss_pred             CcccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-------CCCHHHHHHHHHHHHccCCCCCCEEEEEc
Confidence            35789999999999999999999999999999999999999974       455555 666666 432   368899999


Q ss_pred             CChh-hHHHHHHc--CCC--EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE-EEEEEeeecCCCCCCCC
Q 014369          202 PNLK-GFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       202 ~~~~-di~~a~~~--Gv~--~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v-~~~v~~~fg~pd~~r~~  275 (426)
                      |+.+ |+++|+++  |++  .|++++++||.|+++|+|+|++|+++++.+++++||++|++. ...+-+.|+.+|++|++
T Consensus        75 r~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~  154 (284)
T cd07942          75 QAREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTE  154 (284)
T ss_pred             CCChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCC
Confidence            9865 59999998  665  799999999999999999999999999999999999999751 11233447788889999


Q ss_pred             HHHHHHHHHHHHhC---CCC---EEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          276 PSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       276 ~~~l~~~~~~l~~~---Gad---~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      ++++.++++.+.++   |++   +|+|+||+|+++|.++.++++.+++.+|.   ++|++|+|||+|||+||+++|+++|
T Consensus       155 ~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG  234 (284)
T cd07942         155 LDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAG  234 (284)
T ss_pred             HHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhC
Confidence            99999999999887   544   99999999999999999999999999863   4699999999999999999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~  402 (426)
                      |++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++++++++
T Consensus       235 ~~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~  284 (284)
T cd07942         235 ADRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE  284 (284)
T ss_pred             CCEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999      9999999999999999999999999999999999864

Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=100.00  E-value=8.4e-55  Score=421.62  Aligned_cols=263  Identities=40%  Similarity=0.582  Sum_probs=249.4

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeCC-hhhH
Q 014369          130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-LKGF  207 (426)
Q Consensus       130 ~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~-~~di  207 (426)
                      +|||||||+|++++.|++++|+++++.|+++||++||+|+|..++++|++.|.+++++.+++ .++.++.+++++ .+++
T Consensus         1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i   80 (265)
T cd03174           1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI   80 (265)
T ss_pred             CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence            59999999999999999999999999999999999999999988888999999888888875 457999999988 8899


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.+.++|++.|+++++.|+.|.+.+++++.++.++.+.+.++++|++|+++.++++.++.|    ..+++++.++++.+.
T Consensus        81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~  156 (265)
T cd03174          81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE  156 (265)
T ss_pred             HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888766533    378999999999999


Q ss_pred             hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369          288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS  367 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra  367 (426)
                      ++|++.|+|+||+|.++|+++.++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++|||+      |+
T Consensus       157 ~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~  230 (265)
T cd03174         157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RA  230 (265)
T ss_pred             HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------cc
Confidence            999999999999999999999999999999999779999999999999999999999999999999999999      99


Q ss_pred             CcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369          368 GNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       368 GNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~  402 (426)
                      ||++||+++.+|+.+|+++++|+++|.++++++++
T Consensus       231 Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  265 (265)
T cd03174         231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE  265 (265)
T ss_pred             cCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999998763

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=1.5e-54  Score=426.79  Aligned_cols=256  Identities=21%  Similarity=0.262  Sum_probs=229.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCC-----CCeEEEecCCCCCccccccCHHHHHHHhHhcC-CCcEEEE
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSG-----LPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL  200 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~G-----v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~l  200 (426)
                      |+|+|+|||||+|.++.. ++++|++|++.|.++|     |+.||+++|++       +|.+++.+.++... ...+.++
T Consensus         1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~   72 (279)
T cd07947           1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW   72 (279)
T ss_pred             CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence            679999999999999885 9999999999999999     99999977654       57778887776422 3455555


Q ss_pred             e-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH---
Q 014369          201 T-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP---  276 (426)
Q Consensus       201 ~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~---  276 (426)
                      . +|.+|+++|+++|++.|++++|+||.|+++|+|+|++++++++.+++++||++|+.|++++      ++.+|.++   
T Consensus        73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~------ed~~r~d~~~~  146 (279)
T cd07947          73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL------EDITRADIYGF  146 (279)
T ss_pred             ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE------EcccCCCcccc
Confidence            4 6899999999999999999999999999999999999999999999999999999998655      46677776   


Q ss_pred             --HHHHHHHHHHHhCCCC-EEEEcCCCCCCCH-------HHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          277 --SKVAYVAKELHDMGCF-EISLGDTIGVGTP-------GTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       277 --~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P-------~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                        +++.++++.+.++|++ +|+|+||+|+++|       .++.++++.++++  +|..+|++|+|||+|||+||+++|++
T Consensus       147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~  226 (279)
T cd07947         147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL  226 (279)
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHH
Confidence              3677777777779999 8999999999988       6899999999998  56668999999999999999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHH
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~  402 (426)
                      +||++||+|++|||+      |+||++||+|+++|+.+ |+++++|+++|.++++++++
T Consensus       227 aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~~  279 (279)
T cd07947         227 YGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFEK  279 (279)
T ss_pred             hCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999      99999999999999997 99999999999999998763

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=7.6e-54  Score=420.90  Aligned_cols=258  Identities=22%  Similarity=0.294  Sum_probs=230.4

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhc--CCCcEEEEeC---
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDL--EGARLPVLTP---  202 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~---  202 (426)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|+|. +++      +. +.++.++++  +++++.++++   
T Consensus         1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~   73 (273)
T cd07941           1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DT-EFFARAKKLKLKHAKLAAFGSTRR   73 (273)
T ss_pred             CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHH------HH-HHHHHHHHcCCCCcEEEEEecccc
Confidence            5899999999999999999999999999999999999999964 443      22 223344332  3678877763   


Q ss_pred             ------ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369          203 ------NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       203 ------~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                            +..+++.++++|++.|++++++|+.|++.++|++++++++.+.+++++||++|++|.++.+. |  .+.+++++
T Consensus        74 ~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~  150 (273)
T cd07941          74 AGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANP  150 (273)
T ss_pred             cCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCH
Confidence                  23478899999999999999999999999999999999999999999999999999876443 3  35668999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~G  230 (273)
T cd07941         151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTING  230 (273)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccc
Confidence            99999999999999999999999999999999999999999999779999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHH-hCCCC--CCcChhhHHHHHHHHHH
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLS-GLGVE--TNVDLRKLMLAGDFINK  402 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~-~lG~~--~~iDl~~L~~la~~v~~  402 (426)
                      |||      |+||++||+++.+|+ .+|++  +++|+++|.++++++++
T Consensus       231 lGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~  273 (273)
T cd07941         231 YGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE  273 (273)
T ss_pred             ccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence            999      999999999999998 46776  48999999999999863

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=2.1e-53  Score=415.34  Aligned_cols=250  Identities=26%  Similarity=0.352  Sum_probs=227.7

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCCccccccCHHHHHHHhH-hcCCCcEEEE
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVPQLADARDVMEAVR-DLEGARLPVL  200 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l  200 (426)
                      |+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|++.     +.++.|+..+.++.++.++ ..+++++.++
T Consensus         1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~   80 (263)
T cd07943           1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL   80 (263)
T ss_pred             CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence            689999999999999999999999999999999999999999652     2344566677777777774 5678999988


Q ss_pred             e----CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369          201 T----PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       201 ~----~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      +    .+.++++++.++|++.|++++++|+.              ..+.+++++||++|+++.++++.      ++++++
T Consensus        81 ~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~~------~~~~~~  140 (263)
T cd07943          81 LLPGIGTVDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLMM------SHMASP  140 (263)
T ss_pred             ecCCccCHHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEEe------ccCCCH
Confidence            5    35789999999999999999999884              34678999999999999988874      467899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +++.++++.+.++|+++|+|+||+|.++|.+++++++.++++++.++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~G  220 (263)
T cd07943         141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG  220 (263)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccc
Confidence            99999999999999999999999999999999999999999998668999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHH
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  402 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~  402 (426)
                      |||      |+||++||+++.+|+.+|+++++|+++|.++++++.+
T Consensus       221 lG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~  260 (263)
T cd07943         221 LGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR  260 (263)
T ss_pred             ccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence            999      9999999999999999999999999999999998765

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=100.00  E-value=2.1e-52  Score=411.20  Aligned_cols=249  Identities=23%  Similarity=0.290  Sum_probs=226.7

Q ss_pred             EEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCC----CccccccCHHHHHHHhH-hcCCCcEEEEeC
Q 014369          129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSP----KWVPQLADARDVMEAVR-DLEGARLPVLTP  202 (426)
Q Consensus       129 I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~----~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~  202 (426)
                      |+|||||||+|++ +..|+.++|++|++.|+++||+.||+|+++..    ++.  ..++++.++.++ ..+++++.+|++
T Consensus         1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r   78 (275)
T cd07937           1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR   78 (275)
T ss_pred             CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence            5799999999998 78999999999999999999999999987642    221  246677777666 567899999887


Q ss_pred             C--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          203 N--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       203 ~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      .              ..+++++.++|++.|+++++.|+              ++++.+.+++||++|+++.+++++++  
T Consensus        79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~--  142 (275)
T cd07937          79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG--  142 (275)
T ss_pred             cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC--
Confidence            3              46899999999999999999988              57788999999999999998887654  


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                        .++++++++.++++++.++|+++|+|+||+|.++|.++.++++.++++++ .+|++|+|||+|||+||+++|+++||+
T Consensus       143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~  219 (275)
T cd07937         143 --SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVD  219 (275)
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCC
Confidence              47899999999999999999999999999999999999999999999998 689999999999999999999999999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369          349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  404 (426)
Q Consensus       349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~  404 (426)
                      +||+|++||||      |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus       220 ~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~  269 (275)
T cd07937         220 IVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR  269 (275)
T ss_pred             EEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999      999999999999999999999999999999999998865

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=100.00  E-value=1.4e-50  Score=408.49  Aligned_cols=253  Identities=27%  Similarity=0.371  Sum_probs=225.0

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCC-ccccccCHHHHHHHh-HhcCCCcE
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAV-RDLEGARL  197 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~~~v~~~i-~~~~~~~l  197 (426)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+..     +.. ..|... .++.++.+ +..+++++
T Consensus         2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-~~e~i~~~~~~~~~~~~   80 (337)
T PRK08195          2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-DEEYIEAAAEVVKQAKI   80 (337)
T ss_pred             CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC-HHHHHHHHHHhCCCCEE
Confidence            56999999999999999999999999999999999999999998542     111 123333 45566665 46788999


Q ss_pred             EEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC
Q 014369          198 PVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       198 ~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r  273 (426)
                      .+|. |   +.+++++|.++|++.||++++.++.              +.+.+.+++||++|++|.+++++      +++
T Consensus        81 ~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~------a~~  140 (337)
T PRK08195         81 AALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMM------SHM  140 (337)
T ss_pred             EEEeccCcccHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEe------ccC
Confidence            9865 4   5789999999999999999887773              34678999999999999988885      367


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      ++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|+||+|||+|||+||+++|+++||++||+
T Consensus       141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~  220 (337)
T PRK08195        141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG  220 (337)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence            8999999999999999999999999999999999999999999999 578999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369          353 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  404 (426)
Q Consensus       353 Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~  404 (426)
                      |+.|||+      |+||++||+++++|+.+|++++||+.+|+++++.+..-+
T Consensus       221 Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~  266 (337)
T PRK08195        221 SLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPL  266 (337)
T ss_pred             cChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhh
Confidence            9999999      999999999999999999999999999999999887654

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=8.3e-51  Score=398.11  Aligned_cols=249  Identities=17%  Similarity=0.209  Sum_probs=220.4

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc----cccccCHHHHHHHhHhc-CCCcEEEEeCC
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW----VPQLADARDVMEAVRDL-EGARLPVLTPN  203 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~----~p~~~D~~~v~~~i~~~-~~~~l~~l~~~  203 (426)
                      |+|||||||+|.+++.|+.++|++|++.|+++||+.||+||+..+..    ...+.+.+.+.+..+.. +++++.++++.
T Consensus         1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (266)
T cd07944           1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY   80 (266)
T ss_pred             CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC
Confidence            58999999999999999999999999999999999999999875321    11234555555555544 48999999864


Q ss_pred             ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          .++++.+.++|++.|+++++.++              ++.+.+++++||++|++|.++++.+      ++++++++
T Consensus        81 ~~~~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a------~~~~~~~~  140 (266)
T cd07944          81 GNDDIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAI------SGYSDEEL  140 (266)
T ss_pred             CCCCHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEee------cCCCHHHH
Confidence                47899999999999999987654              7888899999999999999877754      46899999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      .++++.+.++|+++|+|+||+|.++|++++++++.++++++ +++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus       141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G  220 (266)
T cd07944         141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG  220 (266)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC
Confidence            99999999999999999999999999999999999999987 36899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHH-HHHHHHh
Q 014369          359 GCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG-DFINKHL  404 (426)
Q Consensus       359 ecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la-~~v~~~~  404 (426)
                      |      |+||++||+++++|+.+ +++++|+++|.+++ +++....
T Consensus       221 ~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~  260 (266)
T cd07944         221 R------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK  260 (266)
T ss_pred             C------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence            9      99999999999999988 78899999999999 7776654

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=100.00  E-value=2.5e-50  Score=405.88  Aligned_cols=254  Identities=26%  Similarity=0.335  Sum_probs=223.9

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCC-ccccccCHHHHHHHhHhcCCCcEE
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAVRDLEGARLP  198 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~~~v~~~i~~~~~~~l~  198 (426)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+..     +.. ..|...+.+.+.+..+.++++++.
T Consensus         1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~   80 (333)
T TIGR03217         1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA   80 (333)
T ss_pred             CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence            46999999999999999999999999999999999999999998531     111 123334444444455567889999


Q ss_pred             EEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC
Q 014369          199 VLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       199 ~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~  274 (426)
                      +++ |   +.++++.|.++|++.||++++.++.              +.+.+.+++||++|++|.++++++      .++
T Consensus        81 ~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s------~~~  140 (333)
T TIGR03217        81 VLLLPGIGTVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMS------HMT  140 (333)
T ss_pred             EEeccCccCHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcc------cCC
Confidence            776 4   6789999999999999999987773              346789999999999999888854      478


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +++++.++++.+.++|++.|+|+||+|.++|.++.++++.++++++ +++|+||+|||+|||+||+++|+++||++||+|
T Consensus       141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S  220 (333)
T TIGR03217       141 PPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDAS  220 (333)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEee
Confidence            9999999999999999999999999999999999999999999985 678999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369          354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  404 (426)
Q Consensus       354 v~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~  404 (426)
                      +.|||+      ++||++||+++.+|+.+|+++++|+.+|+++++.+-.-+
T Consensus       221 l~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~  265 (333)
T TIGR03217       221 LRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL  265 (333)
T ss_pred             cccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence            999999      999999999999999999999999999999998776543

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=7.5e-50  Score=415.54  Aligned_cols=272  Identities=21%  Similarity=0.274  Sum_probs=233.5

Q ss_pred             CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHh-cCCCcEE
Q 014369          125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP  198 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~  198 (426)
                      ++|+|+|||||||+|++ +..|++++|++|++.|+++||+.||+|    |.++-.++  ..++++.++.+++ +++++++
T Consensus         2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~--~e~p~e~l~~l~~~~~~~~l~   79 (448)
T PRK12331          2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFL--NEDPWERLRKIRKAVKKTKLQ   79 (448)
T ss_pred             CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccC--CCCHHHHHHHHHHhCCCCEEE
Confidence            46999999999999998 568999999999999999999999998    32211111  1467888888874 5899999


Q ss_pred             EEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          199 VLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       199 ~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +|++  |.            +++++|+++|++.|++|+++|+.+              ++.+++++||++|+.+++++++
T Consensus        80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~  145 (448)
T PRK12331         80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISY  145 (448)
T ss_pred             EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence            8875  32            456999999999999999999963              3567899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      +++    .+++++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|++
T Consensus       146 t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAie  220 (448)
T PRK12331        146 TTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIE  220 (448)
T ss_pred             ecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHH
Confidence            864    3689999999999999999999999999999999999999999999998 68999999999999999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC-----CCCCCcccchhh
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP-----SGSKTAIALNRI  419 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~-----~~~~~pivG~~v  419 (426)
                      +||++||+|++|+|+      |+||++||+++++|+.+|+++++|+++|.+++++++++...-     .++....+-.++
T Consensus       221 aGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y~~~~~~~~~~~~~~~~v  294 (448)
T PRK12331        221 AGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHYREEGILNPKVKDVEPKT  294 (448)
T ss_pred             cCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCcccccCCcCe
Confidence            999999999999999      999999999999999999999999999999999997653211     233333444556


Q ss_pred             hhhc
Q 014369          420 AADA  423 (426)
Q Consensus       420 f~h~  423 (426)
                      +.|+
T Consensus       295 ~~~~  298 (448)
T PRK12331        295 LIYQ  298 (448)
T ss_pred             eecC
Confidence            6654

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=2e-49  Score=414.71  Aligned_cols=280  Identities=20%  Similarity=0.279  Sum_probs=245.3

Q ss_pred             CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLP  198 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~  198 (426)
                      |+++|+|+|||||||+|+++ ..|++++++.|++.|+++|++.||+|..+..+. +. --.|+|+.++.++ .+++++++
T Consensus         1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lq   80 (499)
T PRK12330          1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQ   80 (499)
T ss_pred             CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEE
Confidence            56789999999999999988 799999999999999999999999983322110 00 1268899999888 57999999


Q ss_pred             EEeC--C------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          199 VLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       199 ~l~~--~------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +|+|  |            ..+++.++++|++.||||.++||+              +.++.+++.+|+.|..++++|++
T Consensus        81 mL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i~y  146 (499)
T PRK12330         81 MLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTICY  146 (499)
T ss_pred             EEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEEEE
Confidence            9997  2            246899999999999999999994              55678888999999999999988


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISL  343 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl  343 (426)
                      ..+ |   ..+++++.++++.+.++||++|+|+||+|+++|.+++++|+++++++| +++|++|+|||+|||+||+++|+
T Consensus       147 t~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAi  222 (499)
T PRK12330        147 TVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAI  222 (499)
T ss_pred             ecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHH
Confidence            653 3   468999999999999999999999999999999999999999999996 78999999999999999999999


Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHH-----------hCCCCCCCC
Q 014369          344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH-----------LGRPSGSKT  412 (426)
Q Consensus       344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~-----------~g~~~~~~~  412 (426)
                      ++||++||+|++|||+      ++||++||+++++|+.+|+++++|+++|.+++++++++           .+...+..+
T Consensus       223 eAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~  296 (499)
T PRK12330        223 EAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEIFK  296 (499)
T ss_pred             HcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCcccc
Confidence            9999999999999999      99999999999999999999999999999998887754           245555666


Q ss_pred             c-ccchhhhhhccCC
Q 014369          413 A-IALNRIAADASKI  426 (426)
Q Consensus       413 p-ivG~~vf~h~Sgi  426 (426)
                      + +.|...|+|+|++
T Consensus       297 ~qiPGGm~snl~~Ql  311 (499)
T PRK12330        297 SQIPGGMLSNMESQL  311 (499)
T ss_pred             CCCCCCchhhHHHHH
Confidence            6 8898888888753

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=3.3e-49  Score=411.74  Aligned_cols=271  Identities=20%  Similarity=0.248  Sum_probs=235.4

Q ss_pred             ccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEecCCC----CCccccccCHHHHHHHhHh-cCCCcEEE
Q 014369          126 FVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVRD-LEGARLPV  199 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s----~~~~p~~~D~~~v~~~i~~-~~~~~l~~  199 (426)
                      +|+|+|||||||+|+.+ ..|++++|++|++.|+++||+.||+|..+.    -.++  ..++++.++.+++ ++++++++
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl--~e~p~e~l~~l~~~~~~~~l~~   79 (467)
T PRK14041          2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL--NENPWERLKEIRKRLKNTKIQM   79 (467)
T ss_pred             ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc--CCCHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999985 689999999999999999999999973322    1111  1467888888874 58999999


Q ss_pred             EeC--Ch-------hh-----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee
Q 014369          200 LTP--NL-------KG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  265 (426)
Q Consensus       200 l~~--~~-------~d-----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~  265 (426)
                      |++  |.       +|     +++|+++|++.|++|+++||              ++++...+++||++|+.|+++++++
T Consensus        80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~v~~~i~~t  145 (467)
T PRK14041         80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHGAHVQGAISYT  145 (467)
T ss_pred             EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCCCEEEEEEEec
Confidence            875  32       23     68999999999999999998              3557788999999999999999998


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      |+ |   +.+++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|+++
T Consensus       146 ~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAiea  220 (467)
T PRK14041        146 VS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEA  220 (467)
T ss_pred             cC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHh
Confidence            75 4   568999999999999999999999999999999999999999999998 689999999999999999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC--CCCCCCCcccchhhhhhc
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG--RPSGSKTAIALNRIAADA  423 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g--~~~~~~~pivG~~vf~h~  423 (426)
                      ||++||+|++|+|+      |+||++||+++++|+.+|+++++|+++|.+++++++++..  .+.++...-+-.+++.|+
T Consensus       221 Gad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~~q  294 (467)
T PRK14041        221 GADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVGMKSPDSRILVSQ  294 (467)
T ss_pred             CCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcCeeeCC
Confidence            99999999999999      9999999999999999999999999999999999987642  234444444445666664

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=100.00  E-value=1.4e-49  Score=381.24  Aligned_cols=232  Identities=30%  Similarity=0.438  Sum_probs=201.8

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-ChhhHHHHH--
Q 014369          135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAI--  211 (426)
Q Consensus       135 RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~~di~~a~--  211 (426)
                      |||+|+.++.|++++|++|++.|+++||++||+|++...+     .+.+.+.+..+..++.++.++++ +.++++.++  
T Consensus         1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   75 (237)
T PF00682_consen    1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREALPNARLQALCRANEEDIERAVEA   75 (237)
T ss_dssp             THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH
T ss_pred             CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhhcccccceeeeehHHHHHHHHHh
Confidence            9999999999999999999999999999999999654321     22334444444566789999886 456666655  


Q ss_pred             --HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          212 --AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       212 --~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ++|++.|++++++||.|.+.+++++.+++++++.+++++||++|+.|.      |++++.++++++++.++++++.++
T Consensus        76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~~  149 (237)
T PF00682_consen   76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAEA  149 (237)
T ss_dssp             HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHHH
T ss_pred             hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHHc
Confidence              499999999999999999999999999999999999999999999995      667888999999999999999999


Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc
Q 014369          290 GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       290 Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN  369 (426)
                      |+++|+|+||+|.++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|+.|||+      |+||
T Consensus       150 g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~Gn  223 (237)
T PF00682_consen  150 GADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAGN  223 (237)
T ss_dssp             T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTSB
T ss_pred             CCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCCC
Confidence            9999999999999999999999999999999779999999999999999999999999999999999999      9999


Q ss_pred             ccHHHHHHHHHhCC
Q 014369          370 VATEDVVYMLSGLG  383 (426)
Q Consensus       370 a~lEevv~~L~~lG  383 (426)
                      ++||+++.+|+.+|
T Consensus       224 ~~le~lv~~L~~~g  237 (237)
T PF00682_consen  224 APLEELVAALERMG  237 (237)
T ss_dssp             -BHHHHHHHHHHT-
T ss_pred             ccHHHHHHHHhhcC
Confidence            99999999999876

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=100.00  E-value=1.7e-47  Score=409.92  Aligned_cols=272  Identities=24%  Similarity=0.295  Sum_probs=242.9

Q ss_pred             CccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHh-cCCCcEE
Q 014369          125 RFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP  198 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~  198 (426)
                      ++|.|+|||||||+|+.+ ..|++++|++|++.|+++|++.||+|    |.++..++  ..|+++.++.+++ +++++++
T Consensus         2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl--~edp~e~l~~l~~~~~~~~l~   79 (592)
T PRK09282          2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL--NEDPWERLRKLKKALPNTPLQ   79 (592)
T ss_pred             CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC--CccHHHHHHHHHHhCCCCEEE
Confidence            459999999999999996 58999999999999999999999998    32322221  1477888888874 5899999


Q ss_pred             EEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          199 VLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       199 ~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +|+|  |.            .++++|+++|++.|++|.++||.              +++...+++||++|+.+++++++
T Consensus        80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~  145 (592)
T PRK09282         80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY  145 (592)
T ss_pred             EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence            9975  33            35889999999999999999994              46778889999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      +++ |   ..+++++.++++.+.++|+++|+|+||+|.++|.++++++++++++++ .+|++|+|||+|||+||+++|++
T Consensus       146 t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~  220 (592)
T PRK09282        146 TTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE  220 (592)
T ss_pred             ccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH
Confidence            774 4   468999999999999999999999999999999999999999999998 58999999999999999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCC--CCCCCCcccchhhhhh
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAAD  422 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~--~~~~~~pivG~~vf~h  422 (426)
                      +||++||+|++|+|+      |+||++||+++.+|+..|+++++|+++|.+++++++++...  ++++..+..+.++|.|
T Consensus       221 aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v~~~  294 (592)
T PRK09282        221 AGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRVLIH  294 (592)
T ss_pred             hCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccEEEE
Confidence            999999999999999      99999999999999999999999999999999999998743  3778888889999988


Q ss_pred             c
Q 014369          423 A  423 (426)
Q Consensus       423 ~  423 (426)
                      +
T Consensus       295 ~  295 (592)
T PRK09282        295 Q  295 (592)
T ss_pred             c
Confidence            6

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=3.8e-47  Score=406.68  Aligned_cols=257  Identities=20%  Similarity=0.263  Sum_probs=229.1

Q ss_pred             CCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCC-ccccc-cCHHHHHHHhH-hcCCCcEE
Q 014369          123 IPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK-WVPQL-ADARDVMEAVR-DLEGARLP  198 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~-~~p~~-~D~~~v~~~i~-~~~~~~l~  198 (426)
                      |+++|+|+|||||||+|+. +..|++++++.|++.|+++|++.||+|..+.-+ .+|.+ .|+++.++.++ .+++++++
T Consensus         1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq   80 (593)
T PRK14040          1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ   80 (593)
T ss_pred             CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence            4678999999999999999 569999999999999999999999996322211 02222 57888888887 57899999


Q ss_pred             EEeCC--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          199 VLTPN--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       199 ~l~~~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +|+|.              ..+++.|+++|++.||||.++|+              ++++...+++||++|..++++|++
T Consensus        81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~~G~~~~~~i~y  146 (593)
T PRK14040         81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRKVGAHAQGTLSY  146 (593)
T ss_pred             EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence            98872              13588999999999999999988              356788999999999999999988


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      .++ |   ..+++++.++++.+.++|+++|+|+||+|.++|.+++++|+++++++. ++|++|+|||+|||+||+++|++
T Consensus       147 t~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAie  221 (593)
T PRK14040        147 TTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIE  221 (593)
T ss_pred             eeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHH
Confidence            753 3   357999999999999999999999999999999999999999999985 58999999999999999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  404 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~  404 (426)
                      +||++||+|++|||+      |+||++||+++++|+.+|+++++|+.+|.++++++.++.
T Consensus       222 AGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~  275 (593)
T PRK14040        222 AGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR  275 (593)
T ss_pred             cCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999      999999999999999999999999999999999999875

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=100.00  E-value=4e-47  Score=406.08  Aligned_cols=249  Identities=22%  Similarity=0.302  Sum_probs=223.9

Q ss_pred             EEeCCccccCCCCC-CCCCHHHHHHHHHHHHhCCCCeEEEec----CCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC
Q 014369          129 IVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATS----FVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP  202 (426)
Q Consensus       129 I~D~TLRDG~Q~~~-~~f~~~~ki~I~~~L~~~Gv~~IEvG~----~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~  202 (426)
                      |+|||||||+|+.+ ..|++++|++|++.|+++|++.||+|.    .+.-.++  ..|+++.++.+++ .+++++++|+|
T Consensus         1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~--~e~~~e~l~~l~~~~~~~~l~~L~R   78 (582)
T TIGR01108         1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKALPNTPLQMLLR   78 (582)
T ss_pred             CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC--CCCHHHHHHHHHHhCCCCEEEEEEc
Confidence            58999999999985 589999999999999999999999982    2211111  1468899998875 78999999975


Q ss_pred             --Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          203 --NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       203 --~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                        |.            .++++|+++|++.|++|.++||.              +++...+++||++|+.+++++++++ +
T Consensus        79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~-~  143 (582)
T TIGR01108        79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTT-S  143 (582)
T ss_pred             cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEecc-C
Confidence              32            35689999999999999999984              4577888999999999999998876 5


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      |   +.+++++.++++++.++|+++|+|+||+|.++|.+++++++++++.++ .+|++|+|||+|||+||+++|+++||+
T Consensus       144 p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~  219 (582)
T TIGR01108       144 P---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGAD  219 (582)
T ss_pred             C---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCC
Confidence            5   368999999999999999999999999999999999999999999998 589999999999999999999999999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHh
Q 014369          349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  404 (426)
Q Consensus       349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~  404 (426)
                      +||+|++|||+      |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus       220 ~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~  269 (582)
T TIGR01108       220 GIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVR  269 (582)
T ss_pred             EEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Confidence            99999999999      999999999999999999999999999999999999865

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=1.3e-45  Score=383.20  Aligned_cols=276  Identities=19%  Similarity=0.207  Sum_probs=236.3

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLP  198 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~  198 (426)
                      |.++|+|+|||||||.|+... .|++++.+.|++.|+++|++.||+|..+.-+. +. ...|+|+.++.++ .+|+++++
T Consensus         9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq   88 (468)
T PRK12581          9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ   88 (468)
T ss_pred             cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence            557899999999999999654 79999999999999999999999974332210 00 1268899999998 68999999


Q ss_pred             EEeCC--h-------hh-----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          199 VLTPN--L-------KG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       199 ~l~~~--~-------~d-----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +|+|.  .       .|     ++.|.+.|++.+|+|.+.++              ++.++..++.+|++|..+++.+++
T Consensus        89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~~~~~i~y  154 (468)
T PRK12581         89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKEAQLCIAY  154 (468)
T ss_pred             eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCEEEEEEEE
Confidence            99873  1       24     78899999999999999887              566788999999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      .. .|   ..+.+++.++++.+.++|+++|+|+||+|.++|.+++++|+++++. ++++|++|+|||+|||+||+++|++
T Consensus       155 t~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAie  229 (468)
T PRK12581        155 TT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVE  229 (468)
T ss_pred             Ee-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHH
Confidence            76 34   4578999999999999999999999999999999999999999884 5578999999999999999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCC-----CCCCcccchhh
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS-----GSKTAIALNRI  419 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~-----~~~~pivG~~v  419 (426)
                      +||++||+|++|+|+      ++||++||+++++|+..|+++++|+++|.+++++++++...-.     .+....+-.++
T Consensus       230 AGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~~~~~~~~~~~d~~v  303 (468)
T PRK12581        230 AGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYLADGILDPSLLFPDPRT  303 (468)
T ss_pred             cCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcccccCCCccCCCCcce
Confidence            999999999999999      9999999999999999999999999999999999988754322     22223334556


Q ss_pred             hhhc
Q 014369          420 AADA  423 (426)
Q Consensus       420 f~h~  423 (426)
                      +.|+
T Consensus       304 ~~hq  307 (468)
T PRK12581        304 LQYQ  307 (468)
T ss_pred             eeCC
Confidence            6654

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=100.00  E-value=2.5e-44  Score=383.92  Aligned_cols=274  Identities=19%  Similarity=0.228  Sum_probs=236.7

Q ss_pred             CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-cc-cccCHHHHHHHhH-hcCCCcEEEE
Q 014369          125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VP-QLADARDVMEAVR-DLEGARLPVL  200 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-~p-~~~D~~~v~~~i~-~~~~~~l~~l  200 (426)
                      ++|.|+|||||||.|+. ..+|++++.+.|++.|+++|+..||+|..+.-+. +. ...|+|+.++.++ .+|++++++|
T Consensus         2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL   81 (596)
T PRK14042          2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSML   81 (596)
T ss_pred             CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEE
Confidence            46999999999999965 4589999999999999999999999985443211 11 1268999999998 6799999999


Q ss_pred             eC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee
Q 014369          201 TP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  266 (426)
Q Consensus       201 ~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f  266 (426)
                      .|  |.            ..++.|.++|++.+|+|.+.++              ++.++..++.+|+.|..++++||++.
T Consensus        82 ~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~~G~~~~~~i~yt~  147 (596)
T PRK14042         82 LRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKSHKKHAQGAICYTT  147 (596)
T ss_pred             eccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHHcCCEEEEEEEecC
Confidence            85  31            2578899999999999999988              46677889999999999999999864


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          267 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       267 g~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                       +|   ..+++++.++++.+.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||+|||+||+++|+++|
T Consensus       148 -sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaG  222 (596)
T PRK14042        148 -SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAG  222 (596)
T ss_pred             -CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhC
Confidence             34   468999999999999999999999999999999999999999999987 6899999999999999999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCC--CCCCCCcccchhhhhhc
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAADA  423 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~--~~~~~~pivG~~vf~h~  423 (426)
                      |++||+|++|||+      ++||++||+++++|+.+|+++++|+++|.++++++.++...  +.++...-+-.++|.|+
T Consensus       223 ad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq  295 (596)
T PRK14042        223 CNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQ  295 (596)
T ss_pred             CCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecC
Confidence            9999999999999      89999999999999999999999999999999999886521  23333333345666664

>PRK12999 pyruvate carboxylase; Reviewed

Probab=100.00  E-value=1.1e-43  Score=403.78  Aligned_cols=287  Identities=18%  Similarity=0.165  Sum_probs=241.5

Q ss_pred             hHHHHhhcCCCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCc-cccc-cCHHHHHHH
Q 014369          114 DITNKFLKGIPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKW-VPQL-ADARDVMEA  188 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~-~p~~-~D~~~v~~~  188 (426)
                      +++..++  -.++|.|+|||||||+|++ +..|++++++.|++.|+++  |++.||+|+.+.-+. ++.+ .|+|+.++.
T Consensus       522 ~~~~~~~--~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~  599 (1146)
T PRK12999        522 GFADWLR--DQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAE  599 (1146)
T ss_pred             HHHHHHh--ccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHH
Confidence            3444443  4567999999999999998 5899999999999999999  999999997432211 1222 688999999


Q ss_pred             hH-hcCCCcEEEEeCC-------------hh-hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369          189 VR-DLEGARLPVLTPN-------------LK-GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  253 (426)
Q Consensus       189 i~-~~~~~~l~~l~~~-------------~~-di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~  253 (426)
                      ++ .+|++.+++|+|.             .+ .++.|+++|++.||||.+.++              +++++..++.+|+
T Consensus       600 ~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd--------------~~~~~~~i~~vk~  665 (1146)
T PRK12999        600 LREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW--------------VENMRVAIDAVRE  665 (1146)
T ss_pred             HHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh--------------HHHHHHHHHHHHH
Confidence            98 5799999999973             12 488999999999999999888              4557788899999


Q ss_pred             cCCcEEEEEEeeecCCCCCC--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCC
Q 014369          254 LSIPVRGYVSCVVGCPVEGA--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT  331 (426)
Q Consensus       254 ~G~~v~~~v~~~fg~pd~~r--~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd  331 (426)
                      .|..+++.++++-.-.|.++  ++++++.++++.+.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||
T Consensus       666 ~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt  744 (1146)
T PRK12999        666 TGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPIHLHTHDT  744 (1146)
T ss_pred             cCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCC
Confidence            99988888887611123334  79999999999999999999999999999999999999999999985 5899999999


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC--CC
Q 014369          332 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--SG  409 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~--~~  409 (426)
                      +|||+||+++|+++||++||+|++|||+      ++||++||+++++|+..|+++++|+++|.+++++++++...-  .+
T Consensus       745 ~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~~~  818 (1146)
T PRK12999        745 SGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAPFE  818 (1146)
T ss_pred             CchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhccC
Confidence            9999999999999999999999999999      999999999999999999999999999999999999876432  33


Q ss_pred             CCCcccchhhhhhc
Q 014369          410 SKTAIALNRIAADA  423 (426)
Q Consensus       410 ~~~pivG~~vf~h~  423 (426)
                      +...-.-.+++.|+
T Consensus       819 ~~~~~~~~~v~~~~  832 (1146)
T PRK12999        819 SGLKSPTTEVYLHE  832 (1146)
T ss_pred             CCCCCCCcCeEEec
Confidence            33322234466665

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=100.00  E-value=1.7e-42  Score=348.48  Aligned_cols=280  Identities=19%  Similarity=0.222  Sum_probs=251.4

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhH
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGF  207 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di  207 (426)
                      |+|||||||.|..+..|++++|+++++.|+++|++.||+|+|..   .|+..+..+++...+  ....+.+++++ .+++
T Consensus         1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   75 (344)
T TIGR02146         1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCRLDDA   75 (344)
T ss_pred             CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCCHHHH
Confidence            58999999999999999999999999999999999999999653   233323323332222  23456778886 7899


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.+.+++++.++++.+.|+.|+..+++++.++.++.+...+++|++.|+.+..+++      ++.+.+++++.++++.+.
T Consensus        76 ~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~------~~~~~~~~~~~~~~d~~~  149 (344)
T TIGR02146        76 KVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAE------DTFRSELADLLSIYETVG  149 (344)
T ss_pred             HHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEe------eCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998886665      345788999999999999


Q ss_pred             hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369          288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS  367 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra  367 (426)
                      ++|++.|+++||.|.++|.++..++..+++..+.+++++|+|||+|+|+||+++|+.+||+++|+|++|||+      ++
T Consensus       150 ~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~  223 (344)
T TIGR02146       150 VFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RN  223 (344)
T ss_pred             HCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CC
Confidence            999999999999999999999999999999888789999999999999999999999999999999999999      89


Q ss_pred             CcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          368 GNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       368 GNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      ||+++|.++..|..+ |+. .+|++++.++++.+....+.++++++|++|.++|.|+|||
T Consensus       224 G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~  282 (344)
T TIGR02146       224 GITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGI  282 (344)
T ss_pred             CCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccch
Confidence            999999999988874 554 4899999999999999999999999999999999999986

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=100.00  E-value=2e-39  Score=367.77  Aligned_cols=280  Identities=16%  Similarity=0.148  Sum_probs=238.0

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCc-ccc-ccCHHHHHHHhH-hcCCCc
Q 014369          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKW-VPQ-LADARDVMEAVR-DLEGAR  196 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~-~p~-~~D~~~v~~~i~-~~~~~~  196 (426)
                      -.++|.|+|||+|||.|+... ++.+++.+.|++.++++  |+..+|++..+.-+. +.- .+|+|+.++.+| .+|++.
T Consensus       527 ~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~  606 (1143)
T TIGR01235       527 NQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNIL  606 (1143)
T ss_pred             hcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCc
Confidence            346699999999999999966 79999999999999995  999999985443211 011 168999999998 689999


Q ss_pred             EEEEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          197 LPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       197 l~~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      +++|.|  |.            .-++.+++.|+|.+|+|.+.++              +++++..++.+|+.|..++++|
T Consensus       607 ~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~~~g~~~~~~i  672 (1143)
T TIGR01235       607 FQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVAEAGKVVEAAI  672 (1143)
T ss_pred             eeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHHHcCCEEEEEE
Confidence            999987  32            2367889999999999999988              5778899999999999999999


Q ss_pred             EeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH
Q 014369          263 SCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  340 (426)
Q Consensus       263 ~~~fg~--pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL  340 (426)
                      |++-..  |....++.+++.++++.+.++|+++|+|+||+|+++|.++++++++|++++. .+|++|+|||+|||+||++
T Consensus       673 ~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~-~pi~~H~Hdt~Gla~an~l  751 (1143)
T TIGR01235       673 CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTD-LPIHFHTHDTSGIAVASML  751 (1143)
T ss_pred             EEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCCcHHHHHH
Confidence            986211  2222468999999999999999999999999999999999999999999985 6899999999999999999


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC--CCCCCCCcccchh
Q 014369          341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG--RPSGSKTAIALNR  418 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g--~~~~~~~pivG~~  418 (426)
                      +|+++||++||+|++|||+      .++++++|.++++|+..|+++++|+++|.+++++++++-.  .+.++...-.-.+
T Consensus       752 aA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~  825 (1143)
T TIGR01235       752 AAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASE  825 (1143)
T ss_pred             HHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcC
Confidence            9999999999999999999      8999999999999999999999999999999999998642  2333333222346


Q ss_pred             hhhhc
Q 014369          419 IAADA  423 (426)
Q Consensus       419 vf~h~  423 (426)
                      ||.|+
T Consensus       826 v~~~~  830 (1143)
T TIGR01235       826 VYLHE  830 (1143)
T ss_pred             eEEec
Confidence            66664

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=100.00  E-value=4.3e-39  Score=321.84  Aligned_cols=255  Identities=24%  Similarity=0.301  Sum_probs=226.6

Q ss_pred             CCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-cc-ccCHHHHHHHhH-hcCCCcEEE
Q 014369          124 PRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-PQ-LADARDVMEAVR-DLEGARLPV  199 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p~-~~D~~~v~~~i~-~~~~~~l~~  199 (426)
                      .++|+|+|++||||.|+.-. ++.+++.+.|++.|++.|+..+|+|-.+.-+.. .- ..|+|+.++.++ .++++++++
T Consensus         3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQM   82 (472)
T COG5016           3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQM   82 (472)
T ss_pred             cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHH
Confidence            46799999999999999854 799999999999999999999999854321110 00 168999999998 579999999


Q ss_pred             EeC--Chh------------hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee
Q 014369          200 LTP--NLK------------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  265 (426)
Q Consensus       200 l~~--~~~------------di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~  265 (426)
                      |.|  |+.            -++++.+.|+|.+|||...+|.              .++..+++.+|++|..+++.+|+.
T Consensus        83 LlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h~q~~i~YT  148 (472)
T COG5016          83 LLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAHVQGTISYT  148 (472)
T ss_pred             HHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCceeEEEEEec
Confidence            886  432            3578899999999999999884              556788899999999999999997


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      . +|.+   +.+++.++++++.++|+|.|+|+|+.|+++|...+++|+.+++.++ ++|.+|+|.|-|||.++.++|++|
T Consensus       149 ~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEA  223 (472)
T COG5016         149 T-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEA  223 (472)
T ss_pred             c-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHh
Confidence            5 4654   5799999999999999999999999999999999999999999999 589999999999999999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHH
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH  403 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~  403 (426)
                      |||+||+++..+.+      +++++++|.++++|+..++++++|++.|.++++++.++
T Consensus       224 GvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~v  275 (472)
T COG5016         224 GVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREV  275 (472)
T ss_pred             CcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHH
Confidence            99999999998888      79999999999999999999999999999999998754

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.95  E-value=4.8e-27  Score=249.52  Aligned_cols=260  Identities=18%  Similarity=0.221  Sum_probs=222.1

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhC--CCCeEEEecC----CCCCccccccCHHHHHHHhH-hcCC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSS--GLPVVEATSF----VSPKWVPQLADARDVMEAVR-DLEG  194 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~--Gv~~IEvG~~----~s~~~~p~~~D~~~v~~~i~-~~~~  194 (426)
                      -.+.+-+.|||+||+.|+.=. ++.+.+...||...+.+  ....+|.+-.    ++..++  ..|+|+.++.+| .+|+
T Consensus       532 ~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL--~EdPWeRL~~lRk~~PN  609 (1149)
T COG1038         532 EQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFL--KEDPWERLERLRKAVPN  609 (1149)
T ss_pred             hccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHh--ccCHHHHHHHHHHhCCc
Confidence            456799999999999999744 57777778898888776  6778888633    332222  268999999998 6899


Q ss_pred             CcEEEEeC--C------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369          195 ARLPVLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  260 (426)
Q Consensus       195 ~~l~~l~~--~------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~  260 (426)
                      +.++||.|  |            ..-++.|...|+|.+|||.+++.              ++.++-.++.+++.|.-+++
T Consensus       610 vlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~gkv~Ea  675 (1149)
T COG1038         610 VLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREAGKVAEA  675 (1149)
T ss_pred             hHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhcCCeEEE
Confidence            99999875  2            12368889999999999998766              57778889999999988899


Q ss_pred             EEEeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH
Q 014369          261 YVSCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  338 (426)
Q Consensus       261 ~v~~~fg~--pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN  338 (426)
                      ++|+.-..  |....++.+|+.++++.+.++|++++.|+|++|++.|...+.||.+||+.+ ++||.+|.||+-|.++|.
T Consensus       676 tiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at  754 (1149)
T COG1038         676 TICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVAT  754 (1149)
T ss_pred             EEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHH
Confidence            99986322  222346889999999999999999999999999999999999999999998 468999999999999999


Q ss_pred             HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC
Q 014369          339 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG  405 (426)
Q Consensus       339 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g  405 (426)
                      .++|++||+|+||+++..|.+      -+.++++-.++++|.....++++|.+.+.+++.+.+.+-.
T Consensus       755 ~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~  815 (1149)
T COG1038         755 YLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRK  815 (1149)
T ss_pred             HHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999998      8999999999999998888899999999999999987643

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=99.91  E-value=1.4e-23  Score=219.66  Aligned_cols=285  Identities=18%  Similarity=0.158  Sum_probs=227.8

Q ss_pred             HHHHhhcCCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHh--CCCCeEEEecC----CCCCccccccCHHHHHH
Q 014369          115 ITNKFLKGIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVS--SGLPVVEATSF----VSPKWVPQLADARDVME  187 (426)
Q Consensus       115 ~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~--~Gv~~IEvG~~----~s~~~~p~~~D~~~v~~  187 (426)
                      |+.++| +. +..-|+|+|+||..|+.-. ++.+.+-..|+..-..  +|...+|.+-.    ++..++  ..++|+.++
T Consensus       550 FAk~VR-n~-~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFL--hEcPWeRL~  625 (1176)
T KOG0369|consen  550 FAKAVR-NH-PGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFL--HECPWERLR  625 (1176)
T ss_pred             HHHHHh-cC-CCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHH--hcChHHHHH
Confidence            444553 33 3478999999999999633 4556666667666533  58888888633    332221  157899999


Q ss_pred             HhH-hcCCCcEEEEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 014369          188 AVR-DLEGARLPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  252 (426)
Q Consensus       188 ~i~-~~~~~~l~~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak  252 (426)
                      .+| .+|++.+++|.|  |-            +-.+.|.+.|+|.+|+|.++++              +.++.--++.|+
T Consensus       626 ~lRkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~--------------lpnl~lGmeAag  691 (1176)
T KOG0369|consen  626 ELRKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNY--------------LPNLLLGMEAAG  691 (1176)
T ss_pred             HHHHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhh--------------hhhhhhhHhhhh
Confidence            888 579999998875  21            2247899999999999988766              455566688899


Q ss_pred             hcCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369          253 VLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  330 (426)
Q Consensus       253 ~~G~~v~~~v~~~fg--~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN  330 (426)
                      +.|--|++++|+.-.  .|--+.++.+|+..+++.+.++|..+++|+|+.|++.|....-||.++|+++|+++|.+|.||
T Consensus       692 kAGGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHD  771 (1176)
T KOG0369|consen  692 KAGGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHD  771 (1176)
T ss_pred             ccCCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccC
Confidence            999999999998521  222335788999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC--C
Q 014369          331 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--S  408 (426)
Q Consensus       331 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~--~  408 (426)
                      +-|.|+|..+++.+||||.||+++..|.+      -+.++++-.+++.|+..-.+++++++.+.+.+.+.++.-..=  .
T Consensus       772 tsGagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYapF  845 (1176)
T KOG0369|consen  772 TSGAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYAPF  845 (1176)
T ss_pred             CccHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhchh
Confidence            99999999999999999999999999998      899999999999998777899999999999999999865432  2


Q ss_pred             CCCCcccc--hhhhhhc
Q 014369          409 GSKTAIAL--NRIAADA  423 (426)
Q Consensus       409 ~~~~pivG--~~vf~h~  423 (426)
                      ...+-+-|  .+||.||
T Consensus       846 e~tttmksgn~dVY~hE  862 (1176)
T KOG0369|consen  846 ECTTTMKSGNSDVYQHE  862 (1176)
T ss_pred             hhcccccCCCcchhhcc
Confidence            23223322  4667776

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=98.66  E-value=5.4e-15  Score=148.92  Aligned_cols=140  Identities=13%  Similarity=-0.020  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCC---------------ceEEEEeCCCcCcHHHHHHH
Q 014369          278 KVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPV---------------EKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~---------------~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+...++.+.+.|.+ .+.+.|+. ...|..+.++.+.+...-|+               +...+|+||++|++++|++.
T Consensus       111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H  189 (344)
T TIGR02146       111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH  189 (344)
T ss_pred             HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            444556666667865 77788875 55688888888887653221               34778999999999999999


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCC-CCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhh
Q 014369          342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGV-ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI  419 (426)
Q Consensus       342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~-~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~v  419 (426)
                      +...|+..++.|+.|+|+      |+||++++  +..|.. .|. ++.+++..|..+..++...++..++..+|++|.+.
T Consensus       190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~  261 (344)
T TIGR02146       190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG  261 (344)
T ss_pred             ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence            999999999999999999      99999996  333322 343 23455666666555554456778899999999999


Q ss_pred             hhhccCC
Q 014369          420 AADASKI  426 (426)
Q Consensus       420 f~h~Sgi  426 (426)
                      |+|+||+
T Consensus       262 ~~~~~~~  268 (344)
T TIGR02146       262 VTIPFNN  268 (344)
T ss_pred             CCCCCCC
Confidence            9999986

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.29  E-value=1.9e-05  Score=82.82  Aligned_cols=170  Identities=19%  Similarity=0.200  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~  219 (426)
                      ..+.++++++++.+.+.|++.||+|++....     ...+.+.+..+..+...+..-++    ...+++.+.++|++.|+
T Consensus        12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~-----~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~   86 (430)
T PRK07028         12 LLELDRAVEIAKEAVAGGADWIEAGTPLIKS-----EGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVC   86 (430)
T ss_pred             cCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-----hhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence            5789999999999999999999998643110     11222333333323333333222    23489999999999999


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      +....++               ..+.+++++++++|+.+..-+   ++++    ++.    +.++.+.+.|+|.|.+.  
T Consensus        87 v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~----e~~~~a~~~GaD~I~~~--  138 (430)
T PRK07028         87 ILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV----KRAVELEELGVDYINVH--  138 (430)
T ss_pred             EecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH----HHHHHHHhcCCCEEEEE--
Confidence            8743322               123577888999999876311   1111    112    23566778999999765  


Q ss_pred             CCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          300 IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       300 ~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .|.   ..+....+.++.+++.++ .+|.+|+    |....|+..++++||+.|-
T Consensus       139 pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~  188 (430)
T PRK07028        139 VGIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI  188 (430)
T ss_pred             eccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence            222   122233457777777666 5789988    9999999999999999764

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=98.26  E-value=0.00024  Score=71.36  Aligned_cols=227  Identities=12%  Similarity=0.139  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-------------ChhhHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------~~~di~~  209 (426)
                      .++.++.++.++...+.|++.|-+.....|..  ......++++.+++ .+++.+.++++             ..+.+++
T Consensus        35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~  112 (309)
T TIGR00423        35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQL--DIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKR  112 (309)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC--CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            57999999999999999999888864333311  01112344455543 35677776654             1345788


Q ss_pred             HHHcCCCEEE-Eec-cCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          210 AIAAGAKEVA-IFA-SASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       210 a~~~Gv~~V~-i~~-~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ..++|++.+. +.. ..++-..+...  +.+.+    +..++++.|+++|+++..+++  +|.+    -+++...+.+..
T Consensus       113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~----~~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~~  182 (309)
T TIGR00423       113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSD----EWLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLLR  182 (309)
T ss_pred             HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHHH
Confidence            8899999774 222 12232222221  22444    335788899999999987776  5654    256777777777


Q ss_pred             HHhCCCCEE----EE------cCCC-------CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          286 LHDMGCFEI----SL------GDTI-------GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       286 l~~~Gad~I----~l------~DT~-------G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      +.+++.+..    .+      .+|-       ...+|.+..++++..|-.+|.+ .|..-. +.+|.-.  ...|+.+||
T Consensus       183 lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~~--~~~~l~~Ga  259 (309)
T TIGR00423       183 IRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLKL--AQVALEFGA  259 (309)
T ss_pred             HHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHHH--HHHHHhCCC
Confidence            777765421    11      2552       2367888888888888777743 254433 4555432  478899999


Q ss_pred             CEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369          348 STVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  385 (426)
Q Consensus       348 ~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~  385 (426)
                      +-+++|+..==-=|.|....+ -+..++++..++..|..
T Consensus       260 nd~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~  298 (309)
T TIGR00423       260 NDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV  298 (309)
T ss_pred             ccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            999988742111112211223 36789999888887764

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=98.26  E-value=0.00015  Score=73.55  Aligned_cols=224  Identities=15%  Similarity=0.151  Sum_probs=139.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeCC-------------hhhHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-------------LKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~-------------~~di~~  209 (426)
                      .++.++.++.++.+.+.|++.|-+.....|.. + .....++++.++. .+++.+.++++.             .+.++.
T Consensus        71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~  148 (340)
T TIGR03699        71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDL-G-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLER  148 (340)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence            57999999999999999999988854333321 1 0112334455542 345554333321             456778


Q ss_pred             HHHcCCCEEEEe--ccCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          210 AIAAGAKEVAIF--ASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       210 a~~~Gv~~V~i~--~~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ..++|++.+.-.  -..++-..+.-.  ..|.++    ..++++.|++.|+++.+.++  +|.   + -+++...+.++.
T Consensus       149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~----~l~~i~~a~~~Gi~v~~~~i--iGl---g-Et~ed~~~~l~~  218 (340)
T TIGR03699       149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEE----WLEVMETAHKLGLPTTATMM--FGH---V-ETLEDRIEHLER  218 (340)
T ss_pred             HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCccceeE--eeC---C-CCHHHHHHHHHH
Confidence            889999977521  123343333321  235444    45788899999999887666  442   1 246777777888


Q ss_pred             HHhCCCCE------EEE----cCCC----CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          286 LHDMGCFE------ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       286 l~~~Gad~------I~l----~DT~----G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.+.+.+.      |-+    .+|-    ...+|.+..++++..|-.+|+. .|..-. ..+  +......|+.+||+-+
T Consensus       219 l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~--g~~~~~~~l~~Gan~~  295 (340)
T TIGR03699       219 IRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQ--GKEVGQLALHFGANDF  295 (340)
T ss_pred             HHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-ccc--ChHHHHHHHhcCCccC
Confidence            88887654      221    2432    2467899999999988888852 233322 223  3345677999999999


Q ss_pred             eecccCCCCCCCCCCCCCccc---HHHHHHHHHhCCCCC
Q 014369          351 DCSVAGLGGCPYAKGASGNVA---TEDVVYMLSGLGVET  386 (426)
Q Consensus       351 D~Sv~GlGecP~a~graGNa~---lEevv~~L~~lG~~~  386 (426)
                      ++++.. |.  |.. .+|..+   +++++.+++.+|..+
T Consensus       296 ~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~~  330 (340)
T TIGR03699       296 GSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFIP  330 (340)
T ss_pred             CCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCCe
Confidence            988763 11  111 244444   799999999888753

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.17  E-value=0.00026  Score=69.54  Aligned_cols=175  Identities=18%  Similarity=0.239  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc----CCCcEEEEe-CCh--
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL----EGARLPVLT-PNL--  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~-~~~--  204 (426)
                      -+.+.-+++++.|.+.|++.||+|+|-+.+.  .|  |.         .+.+.+++.++.+    .+..+..|. .|.  
T Consensus        21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~  100 (256)
T TIGR00262        21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF  100 (256)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence            3778889999999999999999999754321  12  10         1223444444433    344444443 343  


Q ss_pred             -----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          205 -----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       205 -----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                           +-++.+.++|++.+-+..-                .++...+.++++|++|+....-+     .|   .++++.+
T Consensus       101 ~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv-----~P---~T~~eri  156 (256)
T TIGR00262       101 RKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLV-----AP---NADDERL  156 (256)
T ss_pred             hhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEE-----CC---CCCHHHH
Confidence                 3467888999998887632                13456688899999999865222     12   2456666


Q ss_pred             HHHHHHHHhCC-CCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          280 AYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       280 ~~~~~~l~~~G-ad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      ..+++.  ..| +..+......|.-  .+.++.++++.+++..+. +|.+    ++|.. -.++-.++++|||.|
T Consensus       157 ~~i~~~--~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~v----gfGI~~~e~~~~~~~~GADgv  224 (256)
T TIGR00262       157 KQIAEK--SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK-PVLV----GFGISKPEQVKQAIDAGADGV  224 (256)
T ss_pred             HHHHHh--CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-CEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence            666653  123 3344556777763  567799999999987643 4444    55555 467777889999965

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=98.15  E-value=0.00027  Score=72.06  Aligned_cols=230  Identities=13%  Similarity=0.111  Sum_probs=140.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC-------------ChhhHH
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKGFE  208 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------~~~di~  208 (426)
                      ..++.++.++.++.+.+.|++.|-+.....|..  ......++++.+++ .++..+.++++             ..+.++
T Consensus        68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~--~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~  145 (343)
T TIGR03551        68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL--DGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALK  145 (343)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC--CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence            357999999999999999999888863322211  01111344455553 35666665432             235678


Q ss_pred             HHHHcCCCEEEEeccCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          209 AAIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~---~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      +..++|++.+..  ...+.+..   +++..+ .-..++..+.++.|+++|+++.+.++  +|.+ .   +.+...+.+..
T Consensus       146 ~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i--~G~~-E---t~ed~~~~l~~  216 (343)
T TIGR03551       146 RLKEAGLDSMPG--TAAEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIM--YGHV-E---TPEHWVDHLLI  216 (343)
T ss_pred             HHHHhCcccccC--cchhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEE--EecC-C---CHHHHHHHHHH
Confidence            888999998762  11132221   112110 01233446788999999999987666  5544 2   45777777777


Q ss_pred             HHhCCCCE----EEEc------CCC--------CCCCHHHHHHHHHHHHHhcCCc--eEEEEeCCCcCcHHHHHHHHHHc
Q 014369          286 LHDMGCFE----ISLG------DTI--------GVGTPGTVVPMLEAVMAVVPVE--KLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       286 l~~~Gad~----I~l~------DT~--------G~~~P~~v~~li~~l~~~~p~~--~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      +.+++.+.    ..++      .|-        ..++|.+..++|+..|=.+|..  .|..-. .++|..  -...++.+
T Consensus       217 lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~--~~~~~l~~  293 (343)
T TIGR03551       217 LREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLGKK--LAQVALRC  293 (343)
T ss_pred             HHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccCHH--HHHHHHhC
Confidence            77666542    2222      332        2357889999999988878863  455544 344443  34888999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCCC
Q 014369          346 GISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~~  386 (426)
                      ||+-+++|+..=--=|.|....+ ...+++++.+.+..|..+
T Consensus       294 Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~  335 (343)
T TIGR03551       294 GANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP  335 (343)
T ss_pred             CCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence            99999999854111011211222 246799999998888753

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>PRK07094 biotin synthase; Provisional

Probab=98.12  E-value=0.00052  Score=69.02  Aligned_cols=200  Identities=15%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEe
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~  221 (426)
                      .++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.++..+++.+..-.  .+.+.++...++|++.+.+.
T Consensus        69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g  146 (323)
T PRK07094         69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR  146 (323)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence            46899999999999999999988864322211 0 11223444444433444443222  34678889999999999987


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-----  296 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-----  296 (426)
                      +-..+......++..  ...++..+.++.++++|+.+..+++  +|.|..   +.+.+.+.++.+.+++++.+.+     
T Consensus       147 lEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ed~~~~l~~l~~l~~~~v~~~~~~P  219 (323)
T PRK07094        147 HETADKELYAKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TLEDLADDILFLKELDLDMIGIGPFIP  219 (323)
T ss_pred             cccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CHHHHHHHHHHHHhCCCCeeeeecccc
Confidence            644422222334332  2345566888899999998877666  565544   4688888888899999886654     


Q ss_pred             -cCCC----CCCCHHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          297 -GDTI----GVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       297 -~DT~----G~~~P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                       ++|-    ....+.++.++++..|-.+|...|    ++-++...     -...++.+||+.+=.++..-
T Consensus       220 ~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~~~  284 (323)
T PRK07094        220 HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLTPG  284 (323)
T ss_pred             CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCCch
Confidence             2221    234668888899998888886433    22222221     23589999999886666543

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.10  E-value=0.00035  Score=68.95  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc---CCCcEEEEe-CCh---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL---EGARLPVLT-PNL---  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~-~~~---  204 (426)
                      -+.+.-+++++.|.+.|++.||+|+|-+.+.  .|  |.         .+.+.+++.++++   .++.+..|+ .|.   
T Consensus        26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~  105 (263)
T CHL00200         26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH  105 (263)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence            4778889999999999999999998754221  12  11         1122344444432   345555555 342   


Q ss_pred             ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                          +-++.+.++|++.|-+..=                -++...+..+.++++|+....-+     .|.   ++++.+.
T Consensus       106 ~G~e~F~~~~~~aGvdgviipDL----------------P~ee~~~~~~~~~~~gi~~I~lv-----~Pt---T~~eri~  161 (263)
T CHL00200        106 YGINKFIKKISQAGVKGLIIPDL----------------PYEESDYLISVCNLYNIELILLI-----APT---SSKSRIQ  161 (263)
T ss_pred             hCHHHHHHHHHHcCCeEEEecCC----------------CHHHHHHHHHHHHHcCCCEEEEE-----CCC---CCHHHHH
Confidence                2367788999999888632                13456788889999999876322     232   3566666


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEE
Q 014369          281 YVAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTV  350 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~V  350 (426)
                      .+++....+ +..+...-+.|.  ..|.++.++++.+|+... .+|.+    ++|-.. .++-...++|||.|
T Consensus       162 ~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~~~~~~~~GADGv  228 (263)
T CHL00200        162 KIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQIKQIKGWNINGI  228 (263)
T ss_pred             HHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence            666432111 345555777777  567899999999999764 35665    567763 45555677889965

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=98.06  E-value=0.0007  Score=69.32  Aligned_cols=229  Identities=14%  Similarity=0.106  Sum_probs=141.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-------------hhhHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN-------------LKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~-------------~~di~~  209 (426)
                      .++.++.++.++...+.|++.|-+.+...|. .+ +....++++.++ ..|++.+.++++.             .+.+++
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~-~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~  155 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPN-LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE  155 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence            4799999999999999999999887554443 11 112234444454 3467777776531             234788


Q ss_pred             HHHcCCCEEE-Eec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          210 AIAAGAKEVA-IFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       210 a~~~Gv~~V~-i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      ..++|++.+. ... ..++...+ ++..+ ....++..++++.|+++|+++...++  +|..    -++++..+.+..+.
T Consensus       156 LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Glg----Et~edrv~~l~~Lr  227 (351)
T TIGR03700       156 LKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGHI----ETPAHRVDHMLRLR  227 (351)
T ss_pred             HHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeCC----CCHHHHHHHHHHHH
Confidence            8899999776 221 11232221 22221 11244555788899999999987776  4432    24677777777777


Q ss_pred             hCCCCE------EEE----cCCC------CCCCHHHHHHHHHHHHHhcCCc-eEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          288 DMGCFE------ISL----GDTI------GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       288 ~~Gad~------I~l----~DT~------G~~~P~~v~~li~~l~~~~p~~-~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.+.+.      |-+    .+|-      ...+|.+..++++..|=.+|.+ .|..-. ...  +...+..++.+||+-+
T Consensus       228 ~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w-~~~--~~~~~~~~L~~Gand~  304 (351)
T TIGR03700       228 ELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW-VML--GLKLAQVALAFGVNDL  304 (351)
T ss_pred             HhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc-ccc--CHHHHHHHHhcCCCCC
Confidence            776533      333    2553      4578888899888888777742 222211 111  3345689999999999


Q ss_pred             eecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369          351 DCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  385 (426)
Q Consensus       351 D~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~  385 (426)
                      .+|+..=---|.|....+ .+..++++..++..|..
T Consensus       305 ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~  340 (351)
T TIGR03700       305 DGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRV  340 (351)
T ss_pred             CccCccceeeccccCCCCCCCCHHHHHHHHHHcCCC
Confidence            988763111111111122 46789999999888775

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>PLN02591 tryptophan synthase

Probab=97.93  E-value=0.0015  Score=64.01  Aligned_cols=175  Identities=21%  Similarity=0.226  Sum_probs=110.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--ccc---------CHHHHHHHhHhc---CCCcEEEEeC-Ch---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QLA---------DARDVMEAVRDL---EGARLPVLTP-NL---  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~~---------D~~~v~~~i~~~---~~~~l~~l~~-~~---  204 (426)
                      -+.+.-+++++.|.+.|++.||+|+|-+.+.  .|  |.+         +.+.+++.++++   .++.+..|+. |.   
T Consensus        13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~   92 (250)
T PLN02591         13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK   92 (250)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence            4677889999999999999999999754321  12  111         223444444432   3345555553 42   


Q ss_pred             ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                          +-++.+.++|++-+-+..-            .    ++...+..++++++|+....-+     .|   .++++.+.
T Consensus        93 ~G~~~F~~~~~~aGv~GviipDL------------P----~ee~~~~~~~~~~~gl~~I~lv-----~P---tt~~~ri~  148 (250)
T PLN02591         93 RGIDKFMATIKEAGVHGLVVPDL------------P----LEETEALRAEAAKNGIELVLLT-----TP---TTPTERMK  148 (250)
T ss_pred             hHHHHHHHHHHHcCCCEEEeCCC------------C----HHHHHHHHHHHHHcCCeEEEEe-----CC---CCCHHHHH
Confidence                2356788899999888621            1    3556788899999999875322     12   23456666


Q ss_pred             HHHHHHHhCC-CCEEEEcCCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          281 YVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       281 ~~~~~l~~~G-ad~I~l~DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      .+++.  .-| +..|...-+.|.  ..|.++.++++.+|+.. +.++.+    -+|.. -.++-..++.|||.|
T Consensus       149 ~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~v----GFGI~~~e~v~~~~~~GADGv  215 (250)
T PLN02591        149 AIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAV----GFGISKPEHAKQIAGWGADGV  215 (250)
T ss_pred             HHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence            66654  123 344455666776  55899999999999863 334443    33444 346666778889864

>PRK06256 biotin synthase; Validated

Probab=97.92  E-value=0.0055  Score=62.01  Aligned_cols=219  Identities=15%  Similarity=0.077  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec-CCCCCccccccCHHHHHHHhH---hcCCCcEEEEe--CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVR---DLEGARLPVLT--PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~--~~~~di~~a~~~Gv~~  217 (426)
                      .++.++.++.++.+.+.|+..+-+-. ...|.    ..+.+.+.+.++   ...++.+.+-.  .+.+.++...++|++.
T Consensus        90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~  165 (336)
T PRK06256         90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDR  165 (336)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCE
Confidence            46899999999999999987665422 11121    112234444444   33444443322  2457788889999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-  296 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-  296 (426)
                      +.+.+-.|+.+.+ +++.+  ...++..++++.+++.|+.+...+.  +|. .   -+++.+.+.++.+.+.+++.|.+ 
T Consensus       166 v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g---Et~ed~~~~~~~l~~l~~~~v~i~  236 (336)
T PRK06256        166 YNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G---ESLEDRVEHAFFLKELDADSIPIN  236 (336)
T ss_pred             EecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---CCHHHHHHHHHHHHhCCCCEEeec
Confidence            9887655664433 33332  2355666788899999998876665  443 1   35788888888899999887765 


Q ss_pred             -----cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC
Q 014369          297 -----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS  367 (426)
Q Consensus       297 -----~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra  367 (426)
                           +.|    .....|.++.++++.+|-.+|...|-+-++-..-++-. ..+++ +||+.+=+.  ++=-      ..
T Consensus       237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~-~~~~~-~g~~~~~~g--~~lt------~~  306 (336)
T PRK06256        237 FLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSL-QPLGL-GGANSVIVG--NYLT------TV  306 (336)
T ss_pred             ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhh-HHHHh-ccCceeeEC--Cccc------CC
Confidence                 344    23467899999999998888977676665542222221 12334 688854221  1111      36


Q ss_pred             CcccHHHHHHHHHhCCCCC
Q 014369          368 GNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       368 GNa~lEevv~~L~~lG~~~  386 (426)
                      |+...+++- +++.+|+..
T Consensus       307 g~~~~~d~~-~~~~~g~~~  324 (336)
T PRK06256        307 GQPATADLD-MIEDLGFEI  324 (336)
T ss_pred             CCChHHHHH-HHHHCCCCc
Confidence            666666644 788888764

>PLN02389 biotin synthase

Probab=97.92  E-value=0.006  Score=63.33  Aligned_cols=219  Identities=14%  Similarity=0.097  Sum_probs=138.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec-C---CCCCccccccCHHHHHHHhHhcCCCcEEEEe----CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS-F---VSPKWVPQLADARDVMEAVRDLEGARLPVLT----PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-~---~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~~~~di~~a~~~Gv  215 (426)
                      .++.++.++.++.+.+.|+..|-++. +   ..++     .+.+.+.+.++.++...+.+.+    .+.+.++...++|+
T Consensus       115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~-----~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGl  189 (379)
T PLN02389        115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRK-----TNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGL  189 (379)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCCh-----hHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999999887652 1   1211     1245666666655433232222    24678899999999


Q ss_pred             CEEEEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCC
Q 014369          216 KEVAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCF  292 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad  292 (426)
                      +.+.+-+-+++.+-.... ..    ..++..+.++.|++.|+++...+.  +|. ..   ++++..+.+..+.++  .++
T Consensus       190 d~~~~~LeTs~~~y~~i~~~~----s~e~rl~ti~~a~~~Gi~v~sg~I--iGl-gE---t~edrv~~l~~Lr~L~~~~~  259 (379)
T PLN02389        190 TAYNHNLDTSREYYPNVITTR----SYDDRLETLEAVREAGISVCSGGI--IGL-GE---AEEDRVGLLHTLATLPEHPE  259 (379)
T ss_pred             CEEEeeecCChHHhCCcCCCC----CHHHHHHHHHHHHHcCCeEeEEEE--ECC-CC---CHHHHHHHHHHHHhcccCCc
Confidence            999888776663222211 22    455556788899999999876665  554 22   466777777777777  456


Q ss_pred             EEEE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC-CCCC
Q 014369          293 EISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL-GGCP  361 (426)
Q Consensus       293 ~I~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl-GecP  361 (426)
                      .|.+      ++|    ....+|.+..++|+..|-.+|+..+-+-.-- .-++......|+.+||+-+=+  +++ =   
T Consensus       260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~--g~~~L---  333 (379)
T PLN02389        260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT--GDKLL---  333 (379)
T ss_pred             EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE--CCccc---
Confidence            5553      355    2357788999999999888886322221111 122334468899999995522  121 1   


Q ss_pred             CCCCCCCcccHHHHHHHHHhCCCCCC
Q 014369          362 YAKGASGNVATEDVVYMLSGLGVETN  387 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~lG~~~~  387 (426)
                          -+.+.+.++=+.+++++|++..
T Consensus       334 ----tt~g~~~~~d~~~~~~lg~~~~  355 (379)
T PLN02389        334 ----TTPNNDFDADQAMFKELGLIPK  355 (379)
T ss_pred             ----CCCCCChHHHHHHHHHcCCCcc
Confidence                1233445555678888888743

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.90  E-value=0.0024  Score=62.08  Aligned_cols=177  Identities=21%  Similarity=0.181  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCc-ccccc-CHH--------HHHHHhHhcCCCcEEEEe------CChh-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQLA-DAR--------DVMEAVRDLEGARLPVLT------PNLK-  205 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~-~p~~~-D~~--------~v~~~i~~~~~~~l~~l~------~~~~-  205 (426)
                      ..+.++-.++++.|++. ++.||+|+|-+ |.. .|... +..        ++++.+++..+..+..++      .+.. 
T Consensus        14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~   92 (244)
T PRK13125         14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDN   92 (244)
T ss_pred             CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHH
Confidence            45778889999999998 99999998643 321 23221 112        233444433344443332      2333 


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      -++.+.++|++.|-+..-.-             |+.+...+++++++++|+++...+.        ..++++.+..+++ 
T Consensus        93 ~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~--------p~T~~e~l~~~~~-  150 (244)
T PRK13125         93 FLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS--------PKFPDLLIHRLSK-  150 (244)
T ss_pred             HHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC--------CCCCHHHHHHHHH-
Confidence            36788899999988853110             2235567889999999999874332        2345666666554 


Q ss_pred             HHhCCCCEE--EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369          286 LHDMGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV  350 (426)
Q Consensus       286 l~~~Gad~I--~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V  350 (426)
                         ..-..+  .+.-..|.-.+..+.+.++.+++..+..+|.+    +.|. ...++-.++++|||.|
T Consensus       151 ---~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~v  211 (244)
T PRK13125        151 ---LSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGV  211 (244)
T ss_pred             ---hCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence               222333  33333466678889999999998876444543    6676 4456666679999965

>PRK08445 hypothetical protein; Provisional

Probab=97.90  E-value=0.0027  Score=65.14  Aligned_cols=223  Identities=10%  Similarity=0.081  Sum_probs=137.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHH---HHHHHhH-hcCCCcEEEEeCC-------------hhh
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR---DVMEAVR-DLEGARLPVLTPN-------------LKG  206 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~---~v~~~i~-~~~~~~l~~l~~~-------------~~d  206 (426)
                      .++.++.++.++...+.|...|=+-....|.     .+.+   ++++.++ ..|++++.++.+.             .+.
T Consensus        72 ~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~  146 (348)
T PRK08445         72 ILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEV  146 (348)
T ss_pred             eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHH
Confidence            5699999999999999999866332212221     1333   3444454 4567777665431             356


Q ss_pred             HHHHHHcCCCEEE-E-eccCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          207 FEAAIAAGAKEVA-I-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       207 i~~a~~~Gv~~V~-i-~~~~Sd~~~~~~--~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      +++..++|++.+. + .=+.++-..+.-  -++|.++.    .++++.|+++|+++.+.++  +|.. .   ++++..+.
T Consensus       147 L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~-E---t~edr~~~  216 (348)
T PRK08445        147 LERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV-E---NDEEIIEH  216 (348)
T ss_pred             HHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC-C---CHHHHHHH
Confidence            7788899999874 4 223444333322  25676654    4888899999999998776  5532 2   35555555


Q ss_pred             HHHHHhCCC-----CEEE-----EcCCC--------CCCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHH
Q 014369          283 AKELHDMGC-----FEIS-----LGDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISL  343 (426)
Q Consensus       283 ~~~l~~~Ga-----d~I~-----l~DT~--------G~~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl  343 (426)
                      +..+.++..     ..+.     -++|-        ..++|.+.-++++..|=.+|. ..|..-. -..|..+  +..|+
T Consensus       217 l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~--~~~~L  293 (348)
T PRK08445        217 WERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI--GQLAL  293 (348)
T ss_pred             HHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH--HHHHH
Confidence            555555433     2222     12332        137788888888888776775 2333333 2344444  58899


Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      .+||+-+++|+..=---+.|....+ ...|+++.+.+..|..
T Consensus       294 ~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~  334 (348)
T PRK08445        294 LFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI  334 (348)
T ss_pred             hcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence            9999999999964211112222233 4678888888887764

>PRK07360 FO synthase subunit 2; Reviewed

Probab=97.85  E-value=0.0017  Score=67.07  Aligned_cols=219  Identities=13%  Similarity=0.134  Sum_probs=140.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEeC-------------Chh
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLTP-------------NLK  205 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~~-------------~~~  205 (426)
                      ..++.++.++.++.+.+.|+..|-+.+...|.    ..+.+.+.+.++.    .+++.+.++++             ..+
T Consensus        89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e  164 (371)
T PRK07360         89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE  164 (371)
T ss_pred             eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH
Confidence            35899999999999999999999987543332    2234444444443    35666666532             134


Q ss_pred             hHHHHHHcCCCEEEEeccCChHH---Hhhh--c-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAF---SKSN--I-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~---~~~~--~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                      .+++..++|++.++-  ...+.+   .++.  - .++.++-    .+.++.|+++|+++...+.  +|.   + -++++.
T Consensus       165 ~l~~LkeAGld~~~~--t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i--~G~---g-Et~edr  232 (371)
T PRK07360        165 VLKALKDAGLDSMPG--TAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMM--YGH---V-ETPEHR  232 (371)
T ss_pred             HHHHHHHcCCCcCCC--cchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--eeC---C-CCHHHH
Confidence            688889999998851  111111   1111  1 2344433    5888899999999987666  442   1 256778


Q ss_pred             HHHHHHHHhCCCCE------EEEc----CC-----CCC---CCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHH
Q 014369          280 AYVAKELHDMGCFE------ISLG----DT-----IGV---GTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNI  339 (426)
Q Consensus       280 ~~~~~~l~~~Gad~------I~l~----DT-----~G~---~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANa  339 (426)
                      ++.+..+.+++.+.      |-++    +|     ...   ..|.+..++|+..|=.+|.  ..|..-. ..+|.  .-.
T Consensus       233 v~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg~--~~~  309 (371)
T PRK07360        233 IDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKLGL--KLA  309 (371)
T ss_pred             HHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eeeCH--HHH
Confidence            88787888876654      3221    33     211   3678888888888887886  3444433 34443  335


Q ss_pred             HHHHHcCCCEEeecccC------CCCCCCCCCCCC-cccHHHHHHHHHhCCCCC
Q 014369          340 LISLQMGISTVDCSVAG------LGGCPYAKGASG-NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       340 LaAl~aGa~~VD~Sv~G------lGecP~a~graG-Na~lEevv~~L~~lG~~~  386 (426)
                      ..++.+||+-+.+++.+      .|.      ... ...++++..+++.+|...
T Consensus       310 ~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~~  357 (371)
T PRK07360        310 QVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRIP  357 (371)
T ss_pred             HHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCce
Confidence            66899999999988865      221      122 258899999999888753

>PRK15108 biotin synthase; Provisional

Probab=97.84  E-value=0.013  Score=59.95  Aligned_cols=219  Identities=12%  Similarity=0.070  Sum_probs=141.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcC--CCcEEEEe--CChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLE--GARLPVLT--PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~--~~~l~~l~--~~~~di~~a~~~Gv~~V  218 (426)
                      .++.++.++.++.+.+.|++.|=++.. ..|.    ..+.+.+.+.++.++  ++.+.+-.  -..+.++...++|++.+
T Consensus        75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~  150 (345)
T PRK15108         75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYY  150 (345)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            479999999999999999999866532 2321    123455555555433  33332111  24678899999999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFEISL  296 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad~I~l  296 (426)
                      .+.+-+++.+-. ++..  ...++...+.++.|++.|+.+...+.  +|.   +. ++++..+.+..+.++  ..+.|.+
T Consensus       151 n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE-t~ed~v~~~~~l~~l~~~~~~ip~  221 (345)
T PRK15108        151 NHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIKVCSGGI--VGL---GE-TVKDRAGLLLQLANLPTPPESVPI  221 (345)
T ss_pred             eeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCceeeEEE--EeC---CC-CHHHHHHHHHHHHhccCCCCEEEe
Confidence            998877654332 2211  12455566788899999998875555  553   22 467888888888888  4455543


Q ss_pred             ------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEe-CCCcCcHHHHHHHHHHcCCCEEeecccC-CCCCCCCC
Q 014369          297 ------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQMGISTVDCSVAG-LGGCPYAK  364 (426)
Q Consensus       297 ------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~-HNd~GlA~ANaLaAl~aGa~~VD~Sv~G-lGecP~a~  364 (426)
                            +.|    ...+.|.+..++|...|=.+|+..+-+-. -.+.|  --....|+.+||+-+  -+.+ +=.     
T Consensus       222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~--~~g~~~lt-----  292 (345)
T PRK15108        222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMN--EQTQAMCFMAGANSI--FYGCKLLT-----  292 (345)
T ss_pred             CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhC--hhhHHHHHHcCCcEE--EECCcccc-----
Confidence                  455    12367889999999998888863232211 12222  234688999999987  2222 112     


Q ss_pred             CCCCcccHHHHHHHHHhCCCCC
Q 014369          365 GASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       365 graGNa~lEevv~~L~~lG~~~  386 (426)
                       ..| .+.++.+.+++.+|..+
T Consensus       293 -t~g-~~~~~~~~~i~~~g~~~  312 (345)
T PRK15108        293 -TPN-PEEDKDLQLFRKLGLNP  312 (345)
T ss_pred             -CCC-CCHHHHHHHHHHcCCCc
Confidence             344 68899999999998864

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.80  E-value=0.0029  Score=65.38  Aligned_cols=223  Identities=12%  Similarity=0.095  Sum_probs=134.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~~V  218 (426)
                      ..++.++.++.++.+.+.|+..|-+...-.|.    ..+.+.+.+.++.+    +.+.+.+..-+.+.++...++|++.+
T Consensus       102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~  177 (371)
T PRK09240        102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGV  177 (371)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEE
Confidence            46799999999999999999998775432221    13455565555543    33444333235788999999999999


Q ss_pred             EEeccCC-hHHHhhhc--CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC---
Q 014369          219 AIFASAS-EAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC---  291 (426)
Q Consensus       219 ~i~~~~S-d~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga---  291 (426)
                      .+..-+. +.+.+.-.  |.  ....+...+.++.|++.|++ |..-++  +|.++    +.+...+++..+.+++.   
T Consensus       178 ~i~lET~~~~~~~~i~~~g~--~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~  249 (371)
T PRK09240        178 TVYQETYNPATYAKHHLRGP--KRDFEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYW  249 (371)
T ss_pred             EEEEecCCHHHHHHhCcCCC--CCCHHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCC
Confidence            9998774 43322221  22  11234445677889999996 665455  45433    24555555554444432   


Q ss_pred             ---CEEE---EcCCCC------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH---HHHHHHHHcCCCEEeecccC
Q 014369          292 ---FEIS---LGDTIG------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL---PNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       292 ---d~I~---l~DT~G------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~---ANaLaAl~aGa~~VD~Sv~G  356 (426)
                         ..|.   |-...|      .++|.++.++|..+|-.+|...|.+-+-....+.-   ..-..++.||   --+.++|
T Consensus       250 ~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag---~~~~~G~  326 (371)
T PRK09240        250 QAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG---SSTQPGG  326 (371)
T ss_pred             CCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC---ccCCCCC
Confidence               2343   444444      25788999999999988897666665544322211   1112233343   1234444


Q ss_pred             CCCCCCCCCC-C--------CcccHHHHHHHHHhCCCCC
Q 014369          357 LGGCPYAKGA-S--------GNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       357 lGecP~a~gr-a--------GNa~lEevv~~L~~lG~~~  386 (426)
                      +..      . .        -.-++++.+.+|+.+|+++
T Consensus       327 y~~------~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~  359 (371)
T PRK09240        327 YAD------DHKELEQFEISDDRSVEEVAAALRAKGLQP  359 (371)
T ss_pred             cCC------CCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence            443      1 1        2468899999999999875

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=97.73  E-value=0.0012  Score=62.01  Aligned_cols=168  Identities=18%  Similarity=0.213  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE----EeCChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV----LTPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~----l~~~~~di~~a~~~Gv~~V  218 (426)
                      .++.++-+++++.| +-|++.||+|++....      ...+.++.+++. ++..+.+    +.+....++.+.++|++.|
T Consensus         8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i   80 (206)
T TIGR03128         8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIV   80 (206)
T ss_pred             CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence            35788889999999 8899999998532211      112345555533 4433332    1222346899999999988


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~-  297 (426)
                      -+..-..+               ..+.+++++++++|+++.+.+..    |    .+   ..+.++.+.+.|+|.|.+. 
T Consensus        81 ~vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~~----~----~t---~~~~~~~~~~~g~d~v~~~p  134 (206)
T TIGR03128        81 TVLGVADD---------------ATIKGAVKAAKKHGKEVQVDLIN----V----KD---KVKRAKELKELGADYIGVHT  134 (206)
T ss_pred             EEeccCCH---------------HHHHHHHHHHHHcCCEEEEEecC----C----CC---hHHHHHHHHHcCCCEEEEcC
Confidence            76543221               23457788899999988754321    1    11   2233445567899988774 


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                          ++.+...+    +.++.+++.++..+|.+=    =|-...|.-..+++||+.|-+
T Consensus       135 g~~~~~~~~~~~----~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~v  185 (206)
T TIGR03128       135 GLDEQAKGQNPF----EDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVIV  185 (206)
T ss_pred             CcCcccCCCCCH----HHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence                22222233    345555555554344432    355567888889999997743

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.71  E-value=0.0048  Score=59.12  Aligned_cols=151  Identities=23%  Similarity=0.311  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hc---CCCcEEEEe-CChhhHHHHHHcCCCEEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DL---EGARLPVLT-PNLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~---~~~~l~~l~-~~~~di~~a~~~Gv~~V~i  220 (426)
                      +.++-+.+++.|.+.|++.||+++- +|.       ..+.++.++ ..   |++.+.+-+ -+.++++.|+++|.+.+.-
T Consensus        23 ~~~~a~~~~~al~~~Gi~~iEit~~-~~~-------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs   94 (213)
T PRK06552         23 SKEEALKISLAVIKGGIKAIEVTYT-NPF-------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS   94 (213)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC-Ccc-------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence            7889999999999999999999974 332       345555554 33   245555543 5789999999999997652


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cC
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GD  298 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~D  298 (426)
                      . ..+                   .+++++|+++|+.+.         |  +-.+|.++..    +.++|+|.|.+  ++
T Consensus        95 P-~~~-------------------~~v~~~~~~~~i~~i---------P--G~~T~~E~~~----A~~~Gad~vklFPa~  139 (213)
T PRK06552         95 P-SFN-------------------RETAKICNLYQIPYL---------P--GCMTVTEIVT----ALEAGSEIVKLFPGS  139 (213)
T ss_pred             C-CCC-------------------HHHHHHHHHcCCCEE---------C--CcCCHHHHHH----HHHcCCCEEEECCcc
Confidence            2 111                   378889999999765         2  3345666544    34799999998  34


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ..|   |.    +++.++..+|..+|..    +=|.-..|+-.-+.+|++.|
T Consensus       140 ~~G---~~----~ik~l~~~~p~ip~~a----tGGI~~~N~~~~l~aGa~~v  180 (213)
T PRK06552        140 TLG---PS----FIKAIKGPLPQVNVMV----TGGVNLDNVKDWFAAGADAV  180 (213)
T ss_pred             cCC---HH----HHHHHhhhCCCCEEEE----ECCCCHHHHHHHHHCCCcEE
Confidence            433   33    4666777777655543    34777899999999999976

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.69  E-value=0.0037  Score=63.97  Aligned_cols=207  Identities=14%  Similarity=0.137  Sum_probs=135.6

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChh
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLK  205 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~  205 (426)
                      |++.+..+.  .+..++...++++-.+.+.++|=-.++..-++.+    .+.+...++.    .+.+.+....   ...+
T Consensus        14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e   89 (347)
T PRK09196         14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMHQDHGNSPA   89 (347)
T ss_pred             HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence            344444433  5788999999999999999986655443322221    1222223332    2224444443   3578


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------C--------
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------V--------  270 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d--------  270 (426)
                      .+..|+++|...|.+=.|  ... ..+...+.+|+++..++++++|+..|+.|++-|-..-|.+       +        
T Consensus        90 ~i~~ai~~GftSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~  166 (347)
T PRK09196         90 TCQRAIQLGFTSVMMDGS--LKA-DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKL  166 (347)
T ss_pred             HHHHHHHcCCCEEEecCC--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCccccccc
Confidence            899999999998887443  211 1223447899999999999999999999998887653332       1        


Q ss_pred             ---CCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC----CHH---HHHHHHHHHHHhcCCceEEEEeCCCc------
Q 014369          271 ---EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAVVPVEKLAVHLHDTY------  332 (426)
Q Consensus       271 ---~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~----~P~---~v~~li~~l~~~~p~~~i~~H~HNd~------  332 (426)
                         ...++|+...++++   +.|+|.+.++  -.=|.-    .|.   ==.++++.+++.+|++||.+|+=...      
T Consensus       167 ~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~  243 (347)
T PRK09196        167 SHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLD  243 (347)
T ss_pred             chhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHH
Confidence               11467877666654   6788855443  233333    242   11346788888886678999986644      


Q ss_pred             -------------CcHHHHHHHHHHcCCCEEe
Q 014369          333 -------------GQSLPNILISLQMGISTVD  351 (426)
Q Consensus       333 -------------GlA~ANaLaAl~aGa~~VD  351 (426)
                                   |........|++.|+.-|+
T Consensus       244 ~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KIN  275 (347)
T PRK09196        244 IINEYGGDMPETYGVPVEEIQEGIKHGVRKVN  275 (347)
T ss_pred             HHHHhcCCccccCCCCHHHHHHHHHCCCceEE
Confidence                         7788999999999998774

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=97.69  E-value=0.0047  Score=63.69  Aligned_cols=227  Identities=13%  Similarity=0.099  Sum_probs=130.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~~V  218 (426)
                      ..++.++.++.++.+.+.|+..|=+...-.|.    ..+.+.+.+.++.+    +.+.+.+..-+.++++...++|++.+
T Consensus       101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~  176 (366)
T TIGR02351       101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGV  176 (366)
T ss_pred             CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEE
Confidence            35799999999999999999987765332322    23455566666543    23333322236788999999999999


Q ss_pred             EEeccCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHh------CC
Q 014369          219 AIFASASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHD------MG  290 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~------~G  290 (426)
                      .+..-+.+.-...++. ..+....+...+.++.|++.|++ |..-+.  +|.+. .+.+.-.++..++.|..      ..
T Consensus       177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Gl~e-~~~d~~~~a~~l~~L~~~~~~~~~s  253 (366)
T TIGR02351       177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGAL--LGLDD-WRTDAFFTAYHLRYLQKKYWKTEIS  253 (366)
T ss_pred             EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEE--EeCch-hHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            9998765322222222 01112234445678889999997 665444  55543 22222233333333433      11


Q ss_pred             CCEEEEcCC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe----ecccCCCCC
Q 014369          291 CFEISLGDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD----CSVAGLGGC  360 (426)
Q Consensus       291 ad~I~l~DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD----~Sv~GlGec  360 (426)
                      +....|-..      ...++|.++.++|..+|-.+|...|-+-+-..--+.  +.  .+..|+..+.    +.++|+-. 
T Consensus       254 v~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr--d~--~~~~~~~~~~a~~~~~~G~y~~-  328 (366)
T TIGR02351       254 ISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR--DN--VIPLGITKMSAGSSTEPGGYSS-  328 (366)
T ss_pred             ccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH--HH--HHhhcceeeccCcccCCCCcCC-
Confidence            222223322      245678999999999999899766666554432111  11  1122322221    12334333 


Q ss_pred             CCCCCCCC---------cccHHHHHHHHHhCCCCC
Q 014369          361 PYAKGASG---------NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       361 P~a~graG---------Na~lEevv~~L~~lG~~~  386 (426)
                           ..|         +-++++++.+|+.+|+.+
T Consensus       329 -----~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~  358 (366)
T TIGR02351       329 -----EKKGLEQFEISDERSVAEVEEDLRSKGLQP  358 (366)
T ss_pred             -----CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence                 233         378899999999998875

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>TIGR00433 bioB biotin synthetase

Probab=97.67  E-value=0.03  Score=55.37  Aligned_cols=217  Identities=12%  Similarity=0.041  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEE---ecCCCCCccccccCHHHHHHHhHh-c--CCCcEEEEe--CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEA---TSFVSPKWVPQLADARDVMEAVRD-L--EGARLPVLT--PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEv---G~~~s~~~~p~~~D~~~v~~~i~~-~--~~~~l~~l~--~~~~di~~a~~~Gv  215 (426)
                      ..+.++.++.++.+.+.|+..+-+   |+...+      .+..++++.+.+ .  .++++.+-.  .+.+.++...++|+
T Consensus        61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~------~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~  134 (296)
T TIGR00433        61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKD------REFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGL  134 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh------HHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCC
Confidence            356788888999999999987543   222221      121233333321 1  244432221  24677888899999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      +.|.+.+-.++...+ +++.  ...++...++++.+++.|+.+.+.++  +|. ..   +.+.+.+.++.+.+.|++.|.
T Consensus       135 ~~v~i~~E~~~~~~~-~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e---t~~d~~~~~~~l~~l~~~~i~  205 (296)
T TIGR00433       135 DYYNHNLDTSQEFYS-NIIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE---TVEDRIGLALALANLPPESVP  205 (296)
T ss_pred             CEEEEcccCCHHHHh-hccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---CHHHHHHHHHHHHhCCCCEEE
Confidence            999888765553322 2222  12455566788889999999887665  453 22   467888888889999988664


Q ss_pred             E------cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          296 L------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       296 l------~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                      +      +.|.    ...++++..+++...+..+|...|.+=+=--.-+.---...|+.+||+.+=+  +|+=-      
T Consensus       206 l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------  277 (296)
T TIGR00433       206 INFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------  277 (296)
T ss_pred             eeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------
Confidence            2      2441    2345578888899988888864453211111112211123479999997653  44444      


Q ss_pred             CCCcccHHHHHHHHHhCC
Q 014369          366 ASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       366 raGNa~lEevv~~L~~lG  383 (426)
                      ..|+..-++=+.+++++|
T Consensus       278 ~~g~~~~~~~~~~~~~~~  295 (296)
T TIGR00433       278 TTGNPEEDKDKKLLAKLG  295 (296)
T ss_pred             CCCCCCcHHHHHHHHHcC
Confidence            578888844455777665

Catalyzes the last step of the biotin biosynthesis pathway.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.63  E-value=0.0048  Score=60.80  Aligned_cols=148  Identities=20%  Similarity=0.195  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--ccc---------CHHHHHHHhHhc----CCCcEEEEeC-Ch-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QLA---------DARDVMEAVRDL----EGARLPVLTP-NL-  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~~---------D~~~v~~~i~~~----~~~~l~~l~~-~~-  204 (426)
                      .-+.+.-+++++.|.+.|++.||+|+|.+.+.  .|  |.+         +.+.+++.++++    +++.+..|+. |. 
T Consensus        22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i  101 (258)
T PRK13111         22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI  101 (258)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence            34778889999999999999999999865321  12  111         223445555432    3456556652 42 


Q ss_pred             ------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          205 ------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       205 ------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                            +-++.+.++|++.+.+..            ..    ++.+.+.++.++++|+....-+     .|   .++++.
T Consensus       102 ~~~G~e~f~~~~~~aGvdGviipD------------Lp----~ee~~~~~~~~~~~gl~~I~lv-----ap---~t~~er  157 (258)
T PRK13111        102 FQYGVERFAADAAEAGVDGLIIPD------------LP----PEEAEELRAAAKKHGLDLIFLV-----AP---TTTDER  157 (258)
T ss_pred             hhcCHHHHHHHHHHcCCcEEEECC------------CC----HHHHHHHHHHHHHcCCcEEEEe-----CC---CCCHHH
Confidence                  236788899999998852            11    4567788999999999875211     22   234556


Q ss_pred             HHHHHHHHHhCCCCEEEE---cCCCCC--CCHHHHHHHHHHHHHhc
Q 014369          279 VAYVAKELHDMGCFEISL---GDTIGV--GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l---~DT~G~--~~P~~v~~li~~l~~~~  319 (426)
                      +..+++.    .-.-||+   .-++|.  ..|..+.++++.+++..
T Consensus       158 i~~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~  199 (258)
T PRK13111        158 LKKIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT  199 (258)
T ss_pred             HHHHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence            5555543    3334444   444555  56788999999999865

>PRK08444 hypothetical protein; Provisional

Probab=97.63  E-value=0.0059  Score=62.81  Aligned_cols=229  Identities=14%  Similarity=0.166  Sum_probs=141.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC-------------hhhHH
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN-------------LKGFE  208 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~-------------~~di~  208 (426)
                      ..++.++.++.++.+.+.|+..|-+-+...|+.  .+....++++.++ ..|++.+.++++.             .+-++
T Consensus        78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~--~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~  155 (353)
T PRK08444         78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY--GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE  155 (353)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence            358999999999999999999988865444432  1112234445555 3477888886542             24467


Q ss_pred             HHHHcCCCEEEEeccCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          209 AAIAAGAKEVAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~---~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      +..++|++.+.-  ..-+++.   +.++ ++....-++..++.+.|+++|+++...++  ||-.    -++++.++.+..
T Consensus       156 ~LkeAGl~~~~g--~~aEi~~~~vr~~I-~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l--~G~g----Et~edrv~hl~~  226 (353)
T PRK08444        156 DMLEYGVDSMPG--GGAEIFDEEVRKKI-CKGKVSSERWLEIHKYWHKKGKMSNATML--FGHI----ENREHRIDHMLR  226 (353)
T ss_pred             HHHHhCcccCCC--CCchhcCHHHHhhh-CCCCCCHHHHHHHHHHHHHcCCCccceeE--EecC----CCHHHHHHHHHH
Confidence            888999986542  1112221   1111 11112234556778899999999987777  4433    245666666666


Q ss_pred             HHhCCCC-----E-EEE----cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCC-cCcHHHHHHHHHHcCCCEE
Q 014369          286 LHDMGCF-----E-ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSLPNILISLQMGISTV  350 (426)
Q Consensus       286 l~~~Gad-----~-I~l----~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd-~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.+...+     . |-+    .+|-    ...+|.+..++++..|-.+|+.   -|..-. .-++...+..|+..||+-+
T Consensus       227 Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~~~~q~~L~~Ga~D~  303 (353)
T PRK08444        227 LRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTLNLALVAQEFGANDL  303 (353)
T ss_pred             HHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcHHHHHHHHhcCCccC
Confidence            6665432     2 223    3442    2477888888888887766652   122222 2256788899999999999


Q ss_pred             eecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369          351 DCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  385 (426)
Q Consensus       351 D~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~  385 (426)
                      ++|+..====|.|+...+ ..+.++++.+++..|..
T Consensus       304 ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~  339 (353)
T PRK08444        304 DGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI  339 (353)
T ss_pred             ccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence            999843111112221233 46789999999888764

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=97.62  E-value=0.0097  Score=60.34  Aligned_cols=194  Identities=15%  Similarity=0.180  Sum_probs=132.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cC----CCcEEEEe---CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE----GARLPVLT---PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~----~~~l~~l~---~~~~di~~a~~~Gv  215 (426)
                      ....+....++++-.+.+-++|=-.++..-++.+. .-.+.+...++. ..    .+.+....   ...+.+.+|+++|.
T Consensus        31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gf  109 (321)
T PRK07084         31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGF  109 (321)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            46888889999999999999876655432222211 001222322222 11    23344433   35788999999999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhC
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~  289 (426)
                      ..|.+=.|.          .+.+++++.-++++++|+.+|+.|++-+-.+-|.++.      ..++|+...++++   +.
T Consensus       110 tSVMiD~S~----------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~T  176 (321)
T PRK07084        110 SSVMIDGSH----------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KT  176 (321)
T ss_pred             CEEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---Hh
Confidence            988885442          3678999999999999999999999888876554443      1467888777665   47


Q ss_pred             CCCEEEEc--CCCCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCC-------------------CcCcHHHHHHH
Q 014369          290 GCFEISLG--DTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHD-------------------TYGQSLPNILI  341 (426)
Q Consensus       290 Gad~I~l~--DT~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HN-------------------d~GlA~ANaLa  341 (426)
                      |+|.+.++  -.=|.-       .|.==-++++.+++.++++||.+|+=.                   ++|..-.....
T Consensus       177 gvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~k  256 (321)
T PRK07084        177 GVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRK  256 (321)
T ss_pred             CCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHH
Confidence            88855443  233332       233335678888888865689999877                   44888999999


Q ss_pred             HHHcCCCEEe
Q 014369          342 SLQMGISTVD  351 (426)
Q Consensus       342 Al~aGa~~VD  351 (426)
                      |+..|+.-|+
T Consensus       257 ai~~GI~KIN  266 (321)
T PRK07084        257 AAKSAVCKIN  266 (321)
T ss_pred             HHHcCCceec
Confidence            9999988663

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=97.61  E-value=0.0039  Score=60.64  Aligned_cols=173  Identities=18%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCc-----ccccc-----------CHHHHHHHhHhcCCCcEEEEeC-C-----
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQLA-----------DARDVMEAVRDLEGARLPVLTP-N-----  203 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-----~p~~~-----------D~~~v~~~i~~~~~~~l~~l~~-~-----  203 (426)
                      +.+.-.++++.|.++|++.||+|+|.+.+.     +++..           ...++++.+++..++.+..|+. |     
T Consensus        12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~   91 (242)
T cd04724          12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY   91 (242)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence            557778999999999999999998754221     12110           1222333333222445555554 4     


Q ss_pred             --hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          204 --LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       204 --~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                        .+-++.+.++|++.+-+..    .+            ++...++++++|++|++....+.     |   .++.+.+..
T Consensus        92 G~~~fi~~~~~aG~~giiipD----l~------------~ee~~~~~~~~~~~g~~~i~~i~-----P---~T~~~~i~~  147 (242)
T cd04724          92 GLERFLRDAKEAGVDGLIIPD----LP------------PEEAEEFREAAKEYGLDLIFLVA-----P---TTPDERIKK  147 (242)
T ss_pred             CHHHHHHHHHHCCCcEEEECC----CC------------HHHHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHHHH
Confidence              2346788899999887752    11            23567889999999998763232     2   234555555


Q ss_pred             HHHHHHhCC-CCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH-HHHHHHHcCCCEE
Q 014369          282 VAKELHDMG-CFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTV  350 (426)
Q Consensus       282 ~~~~l~~~G-ad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A-NaLaAl~aGa~~V  350 (426)
                      +++.  ..| +..+.+.-+.|.-+  +..+.+.++.+++.. ..+|.+    +.|.-.. |+-..+++ ||.+
T Consensus       148 i~~~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v----ggGI~~~e~~~~~~~~-ADgv  212 (242)
T cd04724         148 IAEL--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV----GFGISTPEQAAEVAKY-ADGV  212 (242)
T ss_pred             HHhh--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence            4432  122 23344455666543  577889999999863 345655    5566645 66666666 7754

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.58  E-value=0.025  Score=60.28  Aligned_cols=229  Identities=15%  Similarity=0.197  Sum_probs=139.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCC-------C-cEEE-Ee-CChhhHHHHHH
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-------A-RLPV-LT-PNLKGFEAAIA  212 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~-------~-~l~~-l~-~~~~di~~a~~  212 (426)
                      ..++.++.++-++.+.+.|++.+=+-+.-.|..    .+.+.+.+.++.+..       . ++.+ +. .+.++++...+
T Consensus       113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~----~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke  188 (469)
T PRK09613        113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPN----CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE  188 (469)
T ss_pred             eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH
Confidence            367999999999999999999887754333221    245555555554322       1 2222 12 36789999999


Q ss_pred             cCCCEEEEeccCCh--HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHH--
Q 014369          213 AGAKEVAIFASASE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELH--  287 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd--~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~--  287 (426)
                      +|++.+.++.-+.+  .+.+...+.+ ....+.=.+.++.|++.|++ |..-+.  ||.++ .+.+.-.++..++.|.  
T Consensus       189 aGv~~~~l~qETY~~ety~~~hp~g~-k~~y~~Rl~t~~rA~~aGi~~Vg~G~L--~GLge-~~~E~~~l~~hl~~L~~~  264 (469)
T PRK09613        189 AGIGTYQLFQETYHKPTYEKMHPSGP-KSDYDWRLTAMDRAMEAGIDDVGIGVL--FGLYD-YKFEVLGLLMHAEHLEER  264 (469)
T ss_pred             cCCCEEEeccccCCHHHHHhcCCCCC-CCCHHHHHHHHHHHHHcCCCeeCeEEE--EcCCC-CHHHHHHHHHHHHHHHHh
Confidence            99999999976532  2222222211 11223334677789999997 764443  66554 2222222222233332  


Q ss_pred             -hCCCCEEEEc------CC-C----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc-
Q 014369          288 -DMGCFEISLG------DT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV-  354 (426)
Q Consensus       288 -~~Gad~I~l~------DT-~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv-  354 (426)
                       ..|++.|.++      +| .    -...+.++.++|..+|=.+|...|.+=.+..-.+  =  -..+..|++.+++.. 
T Consensus       265 ~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~--r--~~~~~~gvt~~sags~  340 (469)
T PRK09613        265 FGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAEL--R--REVLELGVSQISAGSR  340 (469)
T ss_pred             hCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHH--H--HHHHhhcceeeccccc
Confidence             2366766654      44 2    2357789999999999999977777777777442  2  234566999885322 


Q ss_pred             cCCCCCCCCCC----------CCCcccHHHHHHHHHhCCCC
Q 014369          355 AGLGGCPYAKG----------ASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       355 ~GlGecP~a~g----------raGNa~lEevv~~L~~lG~~  385 (426)
                      .|+|+  |+..          -.=+-++++|+..|...|+.
T Consensus       341 t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~  379 (469)
T PRK09613        341 TGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYI  379 (469)
T ss_pred             CCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCe
Confidence            24444  2211          02356889999999877764

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.58  E-value=0.0065  Score=56.59  Aligned_cols=165  Identities=20%  Similarity=0.169  Sum_probs=103.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe----CChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT----PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~----~~~~di~~a~~~Gv~~V  218 (426)
                      ..+.++-+++++.|.+. ++.||+|.+...      ....+.++.+++ .++..+.+..    +....++.+.++|++.+
T Consensus         9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i   81 (202)
T cd04726           9 LLDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIV   81 (202)
T ss_pred             CCCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEE
Confidence            35788889999999999 999999954311      111344555554 3565554421    22345788999999988


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-G  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-~  297 (426)
                      .+.....+               +.+.+++++++++|+++.+.+.        +..+++.+.+    +...|+|.+.+ +
T Consensus        82 ~~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e~~~----~~~~~~d~v~~~~  134 (202)
T cd04726          82 TVLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDPEKRAK----LLKLGVDIVILHR  134 (202)
T ss_pred             EEEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCHHHHHH----HHHCCCCEEEEcC
Confidence            88654321               2345778889999987764322        2234555443    55679998877 2


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                          .+.|   .....+.++.+++. +..++.+=+    |-...|.-.++++||+.|
T Consensus       135 ~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~v  183 (202)
T cd04726         135 GIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIV  183 (202)
T ss_pred             cccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEE
Confidence                2332   12233445555543 333455533    555689999999999966

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK08185 hypothetical protein; Provisional

Probab=97.57  E-value=0.017  Score=57.77  Aligned_cols=193  Identities=15%  Similarity=0.161  Sum_probs=127.1

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhH
Q 014369          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGF  207 (426)
Q Consensus       136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di  207 (426)
                      ++.+..+.  .++.++...++++-.+.+.++|=-.++..-++.+     .++...++.   ...+.+....   .+.+.+
T Consensus        10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i   84 (283)
T PRK08185         10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----DNFFAYVRERAKRSPVPFVIHLDHGATIEDV   84 (283)
T ss_pred             HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----HHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence            34444433  5788999999999999999987766554323222     123333332   2234444433   357899


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC---------CCCHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---------AIPPSK  278 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~---------r~~~~~  278 (426)
                      +.|++.|++.|.+=-|  +        .+.++.++..++++++|+..|+.|++.+-. +|....+         .++|+.
T Consensus        85 ~~ai~~Gf~SVM~D~S--~--------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~pee  153 (283)
T PRK08185         85 MRAIRCGFTSVMIDGS--L--------LPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQ  153 (283)
T ss_pred             HHHHHcCCCEEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHH
Confidence            9999999998777433  2        467899999999999999999999988866 4332111         346666


Q ss_pred             HHHHHHHHHhCCCCEEEEc-CCCCCC-----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLG-DTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~-DT~G~~-----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ..++++   +.|+|.+.++ -|++..     .|.---++++.+++.++ +||.+|+--..  .-.....|+..|+.-|
T Consensus       154 a~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~--~~e~~~~ai~~GI~Ki  225 (283)
T PRK08185        154 AEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSAN--PDAEIAESVQLGVGKI  225 (283)
T ss_pred             HHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCCC--CHHHHHHHHHCCCeEE
Confidence            555443   4589977761 222222     23333667778877765 47888876655  4778899999998855

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.57  E-value=0.0046  Score=59.21  Aligned_cols=148  Identities=26%  Similarity=0.271  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEE-eCChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+.++-+++++.|.+.|++.||+++ ..+.       ..+.++.++ ..|+..+.+- +-+.++++.+.++|++.+....
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~~-------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~   95 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVTL-RTPA-------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG   95 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEec-CCcc-------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence            4788999999999999999999994 3332       334555555 4576665553 3577899999999999776542


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                       .+                   .+++++|+++++...         |  +-.+|.+    +..+.++|++.|.+-+    
T Consensus        96 -~~-------------------~~vi~~a~~~~i~~i---------P--G~~TptE----i~~a~~~Ga~~vKlFP----  136 (212)
T PRK05718         96 -LT-------------------PPLLKAAQEGPIPLI---------P--GVSTPSE----LMLGMELGLRTFKFFP----  136 (212)
T ss_pred             -CC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHH----HHHHHHCCCCEEEEcc----
Confidence             11                   267788888888764         1  2345655    3446789999999944    


Q ss_pred             CCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       303 ~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                         .+.   ..+++.++.-+|..+|..    +=|...-|.-.=+.+|
T Consensus       137 ---a~~~gg~~~lk~l~~p~p~~~~~p----tGGV~~~ni~~~l~ag  176 (212)
T PRK05718        137 ---AEASGGVKMLKALAGPFPDVRFCP----TGGISPANYRDYLALP  176 (212)
T ss_pred             ---chhccCHHHHHHHhccCCCCeEEE----eCCCCHHHHHHHHhCC
Confidence               332   367788888788655553    4477778888888888

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=97.54  E-value=0.014  Score=58.66  Aligned_cols=191  Identities=17%  Similarity=0.194  Sum_probs=128.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cC--CCcEEEEeC--ChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE--GARLPVLTP--NLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~--~~~l~~l~~--~~~di~~a~~~Gv~  216 (426)
                      .++.+....++++-.+.+-++|=-.++..-++...   .+.+...++.   ..  .+.+....-  +.+.++.|++.|++
T Consensus        25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~Gft  101 (293)
T PRK07315         25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYT  101 (293)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence            46888888999999999999876655432222111   1222222321   12  234444331  45678899999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----CC-CCHHHHHHHHHHHHhCCC
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----GA-IPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~r-~~~~~l~~~~~~l~~~Ga  291 (426)
                      .|.+=.+          ..+.+|.++..++++++|+..|..+++.+-...|.++.    +. ++|+.+.+++    +.|+
T Consensus       102 SVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgv  167 (293)
T PRK07315        102 SIMFDGS----------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGI  167 (293)
T ss_pred             EEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCC
Confidence            8888433          24678999999999999999999998777665443442    22 6787766544    5799


Q ss_pred             CEEEEc--CCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          292 FEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       292 d~I~l~--DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      |.|.++  -.=|..   +|.-=-++++.+++.++++||.+|+-.  |....|...+++.|++-|+..
T Consensus       168 D~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv~  232 (293)
T PRK07315        168 DFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNVN  232 (293)
T ss_pred             CEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEEc
Confidence            988776  332221   232334568888888764678888754  788899999999999977543

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.47  E-value=0.017  Score=55.10  Aligned_cols=152  Identities=26%  Similarity=0.340  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+.++-+++++.|.+.|++.||+++-. |       +..+.++.++ ..+++.+.+-+ -+.++++.++++|++.+.   
T Consensus        17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv---   85 (204)
T TIGR01182        17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV---   85 (204)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE---
Confidence            378888999999999999999999732 2       2345555554 45666666544 578999999999999872   


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                        |+.+               -.+++++|+++|+.+.         |  +-.+|.++..    +.++|++.|-+      
T Consensus        86 --sP~~---------------~~~v~~~~~~~~i~~i---------P--G~~TptEi~~----A~~~Ga~~vKl------  127 (204)
T TIGR01182        86 --SPGL---------------TPELAKHAQDHGIPII---------P--GVATPSEIML----ALELGITALKL------  127 (204)
T ss_pred             --CCCC---------------CHHHHHHHHHcCCcEE---------C--CCCCHHHHHH----HHHCCCCEEEE------
Confidence              2211               1378889999998764         2  3345666444    55799998765      


Q ss_pred             CCHHH-H--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          303 GTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       303 ~~P~~-v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                       .|.. +  ..+++.|+.-+|.+++-    -+=|....|.-.=+.+|+..+
T Consensus       128 -FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v  173 (204)
T TIGR01182       128 -FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC  173 (204)
T ss_pred             -CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence             3433 2  36788888888865544    355777789999999999865

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=97.46  E-value=0.02  Score=57.01  Aligned_cols=188  Identities=15%  Similarity=0.170  Sum_probs=128.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .+..+....++++-.+.+.+.|=-.++..-++.    ..+.+...++..   ..+.+....   .+.+.+..|+++|...
T Consensus        20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~----~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftS   95 (276)
T cd00947          20 INNLETLKAILEAAEETRSPVILQISEGAIKYA----GLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSS   95 (276)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCE
Confidence            467788888999999999997655443322221    123333333321   234444433   3578899999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      |.+=.|.          .+.+++++..++++++|+..|+.|++-+-.+-|.++.      ..++|+...++++   +.|+
T Consensus        96 VMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~---~Tgv  162 (276)
T cd00947          96 VMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVE---ETGV  162 (276)
T ss_pred             EEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHH---HHCC
Confidence            8875432          3578999999999999999999999888876444432      2467888777665   4688


Q ss_pred             CEEEEc--CCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          292 FEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       292 d~I~l~--DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |.+.++  -.=|.-   .|.==.++++.+++.++ +||.+|+  .-|+.--....|++.|+.-|+
T Consensus       163 D~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN  224 (276)
T cd00947         163 DALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHG--GSGIPDEQIRKAIKLGVCKIN  224 (276)
T ss_pred             CEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence            855443  232332   45444567888888775 4787776  557888889999999998664

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=97.46  E-value=0.017  Score=59.15  Aligned_cols=197  Identities=15%  Similarity=0.170  Sum_probs=131.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~di~~a~~~Gv~  216 (426)
                      .+..+....++++-.+.+.++|=-.++..-++.+    .+.+...++.    .+.+.+....   .+.+.+.+|+++|..
T Consensus        23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFt   98 (347)
T TIGR01521        23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFT   98 (347)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence            5788999999999999999987766554333222    1222333332    2224444433   467889999999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------CC-----------CCCCHHH
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------VE-----------GAIPPSK  278 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d~-----------~r~~~~~  278 (426)
                      .|.+=.|.-+   ..+...+.+|+++..++++++|+..|+.|++-|-..-|.+       +.           ..++|+.
T Consensus        99 SVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~Pee  175 (347)
T TIGR01521        99 SVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEE  175 (347)
T ss_pred             EEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHH
Confidence            8887543210   1223457899999999999999999999998887754333       21           1467777


Q ss_pred             HHHHHHHHHhCCCCEEEEc--CCCCCCC----H----HHHHHHHHHHHHhcCCceEEEEeCCC-----------------
Q 014369          279 VAYVAKELHDMGCFEISLG--DTIGVGT----P----GTVVPMLEAVMAVVPVEKLAVHLHDT-----------------  331 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~--DT~G~~~----P----~~v~~li~~l~~~~p~~~i~~H~HNd-----------------  331 (426)
                      ..++++   +.|+|.+.++  -.=|.-.    |    .+ .++++.+++.++++||.+|+=..                 
T Consensus       176 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~  251 (347)
T TIGR01521       176 AADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK  251 (347)
T ss_pred             HHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence            666665   5688854443  3334332    4    33 34578888888656899988654                 


Q ss_pred             --cCcHHHHHHHHHHcCCCEEe
Q 014369          332 --YGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       332 --~GlA~ANaLaAl~aGa~~VD  351 (426)
                        +|.--.....|++.|+.-|+
T Consensus       252 ~~~g~p~e~i~~ai~~GI~KVN  273 (347)
T TIGR01521       252 ETYGVPVEEIVEGIKYGVRKVN  273 (347)
T ss_pred             ccCCCCHHHHHHHHHCCCeeEE
Confidence              34557889999999998664

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.45  E-value=0.0038  Score=61.58  Aligned_cols=177  Identities=20%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhH----hcCCCcEEEEeC-Ch-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVR----DLEGARLPVLTP-NL-  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~----~~~~~~l~~l~~-~~-  204 (426)
                      .-+.+.-+++++.|.+.|++.||+|+|.+.+.  .|  |-         .+.+.+++.++    ..+++.+..|+. |. 
T Consensus        20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i   99 (259)
T PF00290_consen   20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPI   99 (259)
T ss_dssp             SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHH
Confidence            34678889999999999999999999864321  12  10         12334444443    335677777774 32 


Q ss_pred             --h----hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          205 --K----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       205 --~----di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                        .    -++.+.++|++.+-|..-.                ++...+..+.++++|+....-++     |   .++++.
T Consensus       100 ~~~G~e~F~~~~~~aGvdGlIipDLP----------------~ee~~~~~~~~~~~gl~~I~lv~-----p---~t~~~R  155 (259)
T PF00290_consen  100 FQYGIERFFKEAKEAGVDGLIIPDLP----------------PEESEELREAAKKHGLDLIPLVA-----P---TTPEER  155 (259)
T ss_dssp             HHH-HHHHHHHHHHHTEEEEEETTSB----------------GGGHHHHHHHHHHTT-EEEEEEE-----T---TS-HHH
T ss_pred             hccchHHHHHHHHHcCCCEEEEcCCC----------------hHHHHHHHHHHHHcCCeEEEEEC-----C---CCCHHH
Confidence              2    3567778999988886321                12234666778999997653222     2   245677


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.++++..... +..+...-++|.-  .|.++.++++.+|+.. +.|+.+=    +|....--...+..|||.|
T Consensus       156 i~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGv  223 (259)
T PF00290_consen  156 IKKIAKQASGF-IYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGV  223 (259)
T ss_dssp             HHHHHHH-SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEE
T ss_pred             HHHHHHhCCcE-EEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEE
Confidence            66666533211 3334445666655  4789999999999887 3345442    3555555566666888855

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.44  E-value=0.027  Score=56.19  Aligned_cols=190  Identities=18%  Similarity=0.205  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-C--C-CcEEEEe---CChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--G-ARLPVLT---PNLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~--~-~~l~~l~---~~~~di~~a~~~Gv~  216 (426)
                      .++.+....++++-.+.+.+.|=..++..-++.+.   .+.+...++.+ .  + +.+....   ...+.++.+++.|++
T Consensus        23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~   99 (282)
T TIGR01859        23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFS   99 (282)
T ss_pred             ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence            46888888999999999999877655433232221   12233333321 1  2 3333322   246788999999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC------CCCCCHHHHHHHHHHHHhCC
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV------EGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd------~~r~~~~~l~~~~~~l~~~G  290 (426)
                      .|.+=.+          ..+.++.++..++++++|+..|+.|...+-..-|.++      .+.++|+.+.++.+   +.|
T Consensus       100 sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tg  166 (282)
T TIGR01859       100 SVMIDGS----------HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETG  166 (282)
T ss_pred             EEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHC
Confidence            8877433          2367899999999999999999988766654222222      22457777655553   359


Q ss_pred             CCEEEEc-CC-CCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          291 CFEISLG-DT-IGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       291 ad~I~l~-DT-~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +|.|.++ -| -|..  .|.-=-++++.+++.++ +||..|  ..-|...-|...++++|++-|+.
T Consensus       167 vD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~h--GgSGi~~e~i~~~i~~Gi~kiNv  229 (282)
T TIGR01859       167 VDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLH--GASGIPEEQIKKAIKLGIAKINI  229 (282)
T ss_pred             cCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEE--CCCCCCHHHHHHHHHcCCCEEEE
Confidence            9987743 11 1111  12222445677777765 366655  45688889999999999997643

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=97.40  E-value=0.023  Score=58.27  Aligned_cols=206  Identities=15%  Similarity=0.196  Sum_probs=134.2

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhh
Q 014369          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKG  206 (426)
Q Consensus       136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~d  206 (426)
                      ++.+..+.  .+..++...++++-.+.+.++|=-.++..-++.+    .+.+...++.    .+.+.+....   ...+.
T Consensus        15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~   90 (347)
T PRK13399         15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLHQDHGNSPAT   90 (347)
T ss_pred             HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHH
Confidence            34444433  5788999999999999999987666554333322    1223333332    2234444433   45788


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-------C---------
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------V---------  270 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-------d---------  270 (426)
                      +.+|+++|...|.+=.|.-+   .-+...+.+++++.-++++++|+..|+.|++-|-..-|.+       +         
T Consensus        91 i~~Ai~~GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~  167 (347)
T PRK13399         91 CQSAIRSGFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLS  167 (347)
T ss_pred             HHHHHhcCCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccc
Confidence            99999999998887543211   0012235789999999999999999999998886543222       2         


Q ss_pred             --CCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC----CHH---HHHHHHHHHHHhcCCceEEEEeCCC--------
Q 014369          271 --EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAVVPVEKLAVHLHDT--------  331 (426)
Q Consensus       271 --~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~----~P~---~v~~li~~l~~~~p~~~i~~H~HNd--------  331 (426)
                        ...++|+...++++   +.|+|.+.++  -.=|.-    .|.   ==.++++.+++.++++||.+|+=..        
T Consensus       168 ~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~  244 (347)
T PRK13399        168 HDQMLTDPDQAVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEI  244 (347)
T ss_pred             ccccCCCHHHHHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHH
Confidence              12567887777665   4688854443  233333    132   1245678888888656899998664        


Q ss_pred             -----------cCcHHHHHHHHHHcCCCEEe
Q 014369          332 -----------YGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       332 -----------~GlA~ANaLaAl~aGa~~VD  351 (426)
                                 +|........|+..|+.-|+
T Consensus       245 ~~~~g~~~~~~~g~~~e~~~kai~~GI~KIN  275 (347)
T PRK13399        245 INAYGGKMKETYGVPVEEIQRGIKHGVRKVN  275 (347)
T ss_pred             HHHhcCCccccCCCCHHHHHHHHHCCCeEEE
Confidence                       45668889999999998763

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=97.37  E-value=0.033  Score=56.21  Aligned_cols=189  Identities=17%  Similarity=0.138  Sum_probs=126.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEe---CChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT---PNLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~~~~di~~a~~~Gv~  216 (426)
                      .+..++-..++++-.+.+.++|=-.+...-++.    ..+.+...++.    .+.+.+....   .+.+.+.+|+++|..
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~----g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gft   99 (307)
T PRK05835         24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT   99 (307)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhC----ChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence            578899999999999999998776554332322    12223333332    1224444433   467889999999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHD  288 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~  288 (426)
                      .|.+=.|          ..+.+|+++..++++++|+..|+.|++-+-.+-|.++.        ..++|+...++++   +
T Consensus       100 SVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~  166 (307)
T PRK05835        100 SVMIDAS----------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E  166 (307)
T ss_pred             EEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---h
Confidence            8887544          23568999999999999999999999888775444442        1467777666654   6


Q ss_pred             CCCCEEEEc--CCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCC-------------------cCcHHHHHHHHH
Q 014369          289 MGCFEISLG--DTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDT-------------------YGQSLPNILISL  343 (426)
Q Consensus       289 ~Gad~I~l~--DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd-------------------~GlA~ANaLaAl  343 (426)
                      .|+|.+.++  -+=|.-    .|.==-++++.+++.++ +||.+|+=..                   +|-.+-....|+
T Consensus       167 TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai  245 (307)
T PRK05835        167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV  245 (307)
T ss_pred             hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH
Confidence            799954433  333332    23333556777888775 4798887544                   333445778888


Q ss_pred             HcCCCEE
Q 014369          344 QMGISTV  350 (426)
Q Consensus       344 ~aGa~~V  350 (426)
                      ..|+.-|
T Consensus       246 ~~GI~Ki  252 (307)
T PRK05835        246 KGGINKV  252 (307)
T ss_pred             HcCceEE
Confidence            8888766

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0079  Score=59.37  Aligned_cols=177  Identities=19%  Similarity=0.214  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhc----CCCcEEEEe-CCh--
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDL----EGARLPVLT-PNL--  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~-~~~--  204 (426)
                      -+.+.-+++++.|.+.|++.||+|+|-+.+.  .|  |.         ...++.++.++.+    .++.+..|+ .|.  
T Consensus        28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~  107 (265)
T COG0159          28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF  107 (265)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence            3778889999999999999999999754321  12  11         1223444444422    455666666 342  


Q ss_pred             -hh----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          205 -KG----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       205 -~d----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                       .+    ++.+.++|++.+-+..-.                ++...++.+.|+++|+....     +..|.   ++++.+
T Consensus       108 ~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~-----lvaPt---t~~~rl  163 (265)
T COG0159         108 NYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF-----LVAPT---TPDERL  163 (265)
T ss_pred             HhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE-----EeCCC---CCHHHH
Confidence             23    567889999998887321                23344677788899998652     21232   345665


Q ss_pred             HHHHHHHHhCC-CCEEEEcCCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          280 AYVAKELHDMG-CFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       280 ~~~~~~l~~~G-ad~I~l~DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .++++..  -| +..+...-++|.-.|  ..+.++++.+|+... .|+.+      |.|+.+.-.+-+.+.- -|+-|.
T Consensus       164 ~~i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v------GFGIs~~e~~~~v~~~-ADGVIV  232 (265)
T COG0159         164 KKIAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTD-VPVLV------GFGISSPEQAAQVAEA-ADGVIV  232 (265)
T ss_pred             HHHHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhcC-CCeEE------ecCcCCHHHHHHHHHh-CCeEEE
Confidence            5555422  13 567777788888887  348999999998763 34543      4555544444433322 444444

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.35  E-value=0.038  Score=55.24  Aligned_cols=188  Identities=14%  Similarity=0.184  Sum_probs=127.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .++.++...++++-.+.+.++|=-.++..-++.    ..+.+...++.   ...+.+....   .+.+.+.+|+++|...
T Consensus        25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftS  100 (284)
T PRK12857         25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA----GIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTS  100 (284)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence            468888889999999999998766554322221    12223233332   1234444333   4578899999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~----r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=-|.          .+.+|+++..++++++|+..|+.|++-|-.+-|.++.    .    .++|+...++++   +.
T Consensus       101 VM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~T  167 (284)
T PRK12857        101 VMIDGSK----------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ET  167 (284)
T ss_pred             EEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HH
Confidence            8875432          3578999999999999999999999888876444432    1    467877777664   56


Q ss_pred             CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |+|.+.++=  .=|.-  .|.==.++++.+++.++ +||.+|+  .-|+.-.....|++.|+.-|+
T Consensus       168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN  230 (284)
T PRK12857        168 GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHG--SSGVPDEAIRKAISLGVRKVN  230 (284)
T ss_pred             CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence            888554432  22221  34444567788887775 4787766  558888999999999988553

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=97.34  E-value=0.011  Score=57.84  Aligned_cols=206  Identities=15%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCcc-ccc--cCHHHHHHHhHhcCCCcEEEEeC--------C-----------hhhHHH
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWV-PQL--ADARDVMEAVRDLEGARLPVLTP--------N-----------LKGFEA  209 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~-p~~--~D~~~v~~~i~~~~~~~l~~l~~--------~-----------~~di~~  209 (426)
                      +.++.+.++|++.||+.......+. +..  .+.+++.+.++...+..+.+..+        +           .+-++.
T Consensus        14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~   93 (279)
T cd00019          14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIER   93 (279)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHH
Confidence            3455668899999999643222111 110  12333444444333455555432        1           112456


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+.|++.|.++....+.   .......+..++.+.+++++|++.|+.+.  +....+.....-.+++.+.++++.+-. 
T Consensus        94 A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~~-  167 (279)
T cd00019          94 CEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIKE-  167 (279)
T ss_pred             HHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcCC-
Confidence            677899988876543220   00011235567778888899999998765  333221111112456666666655430 


Q ss_pred             CCCEE-EEcCCCC-----C--CCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          290 GCFEI-SLGDTIG-----V--GTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       290 Gad~I-~l~DT~G-----~--~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                       -+.+ .+-|+.=     .  .+|++..+.++.+.+.++. -...+|+||..+...         +         + +..
T Consensus       168 -~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~---------~-~~~  227 (279)
T cd00019         168 -KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S---------G-KDR  227 (279)
T ss_pred             -CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C---------C-Ccc
Confidence             2222 2334322     2  1356677888887776642 248899999875420         0         0 011


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~  384 (426)
                      ...+| .|..+..+++..|+..|+
T Consensus       228 ~~~~G-~G~id~~~~l~~L~~~~y  250 (279)
T cd00019         228 HEPIG-EGDIDGEELFKELKKDPY  250 (279)
T ss_pred             ccCCC-CCCcCCHHHHHHHHhCcc
Confidence            22234 688999999999999887

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=97.33  E-value=0.049  Score=54.49  Aligned_cols=188  Identities=18%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CC--CcEEEEe---CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EG--ARLPVLT---PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~--~~l~~l~---~~~~di~~a~~~Gv  215 (426)
                      .+..++...++++-.+.+.+.|=-.++..-++.   ...+.+...++..   ..  +.+....   .+.+.+.+|+++|.
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf  101 (285)
T PRK07709         25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF  101 (285)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            478888889999999999998766554332220   1223333333321   12  3444433   35788999999999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G--AIPPSKVAYVAKELHDM  289 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~--r~~~~~l~~~~~~l~~~  289 (426)
                      ..|.+=.|.          .+.+|+++.-++++++|+..|+.|++-|-..-|.++.    .  .++|+...++++   +.
T Consensus       102 tSVM~DgS~----------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~T  168 (285)
T PRK07709        102 TSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---AT  168 (285)
T ss_pred             CEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---Hh
Confidence            988875442          4578999999999999999999999988876454442    1  478888777665   56


Q ss_pred             CCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          290 GCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       290 Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+|.+.++  -.=|.-  .|.==.++++.+++.++ +||.+|+  ..|+.-.....|+..|+.-|
T Consensus       169 gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~~Gi~Ki  230 (285)
T PRK07709        169 GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAISLGTSKI  230 (285)
T ss_pred             CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence            99855542  222221  24333456777777775 4787766  57888889999999998755

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=97.33  E-value=0.04  Score=55.25  Aligned_cols=188  Identities=17%  Similarity=0.145  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cC--CCcEEEEe---CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE--GARLPVLT---PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~--~~~l~~l~---~~~~di~~a~~~Gv  215 (426)
                      .+..+....++++-.+.+.+.|=-.++..-++.   ...+.+...++.   ..  .+.+....   .+.+.+.+|+++|.
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf  101 (288)
T TIGR00167        25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGF  101 (288)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            468888889999999999998766544332221   112333333332   12  33444433   46789999999999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHH
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELH  287 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~  287 (426)
                      ..|.+=.|.          .+.+|+++.-++++++|+..|+.|++-|-.+-|.++.        ..++|+...+++   .
T Consensus       102 tSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~  168 (288)
T TIGR00167       102 SSVMIDGSH----------EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---K  168 (288)
T ss_pred             CEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---h
Confidence            988874432          3578999999999999999999999888876454442        146787665555   3


Q ss_pred             hCCCCEEEEcC--CCCCC--CHH-HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          288 DMGCFEISLGD--TIGVG--TPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       288 ~~Gad~I~l~D--T~G~~--~P~-~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.|+|.+.++=  .=|.-  .|. ==.++++.+++.++ +||.+|+  .-|+.-.....|++.|+.-|
T Consensus       169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHG--gSG~~~e~~~~ai~~Gi~Ki  233 (288)
T TIGR00167       169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHG--GSGIPDEEIKKAISLGVVKV  233 (288)
T ss_pred             ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence            67898665542  22322  243 22356777777775 4788876  45778888999999998755

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.31  E-value=0.0061  Score=57.72  Aligned_cols=153  Identities=24%  Similarity=0.268  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      -+.++-++++++|.+.|++.||+++-. |       +..+.++.++ +.|++.+.+-+ .+.++++.|+++|++.+.-. 
T Consensus        17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP-   87 (196)
T PF01081_consen   17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP-   87 (196)
T ss_dssp             SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES-
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC-
Confidence            467888999999999999999999743 2       3445566554 56887777654 68899999999999976543 


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTI  300 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~DT~  300 (426)
                      ..+                   .+++++|+++|+.+..           +-.+|.++..    +.++|++.+-+  ++..
T Consensus        88 ~~~-------------------~~v~~~~~~~~i~~iP-----------G~~TptEi~~----A~~~G~~~vK~FPA~~~  133 (196)
T PF01081_consen   88 GFD-------------------PEVIEYAREYGIPYIP-----------GVMTPTEIMQ----ALEAGADIVKLFPAGAL  133 (196)
T ss_dssp             S---------------------HHHHHHHHHHTSEEEE-----------EESSHHHHHH----HHHTT-SEEEETTTTTT
T ss_pred             CCC-------------------HHHHHHHHHcCCcccC-----------CcCCHHHHHH----HHHCCCCEEEEecchhc
Confidence            111                   3788899999997653           2234655444    55799998776  3443


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |-      ..+++.|+.-+|+.++-.    +=|....|.-.=+++|+..+
T Consensus       134 GG------~~~ik~l~~p~p~~~~~p----tGGV~~~N~~~~l~ag~~~v  173 (196)
T PF01081_consen  134 GG------PSYIKALRGPFPDLPFMP----TGGVNPDNLAEYLKAGAVAV  173 (196)
T ss_dssp             TH------HHHHHHHHTTTTT-EEEE----BSS--TTTHHHHHTSTTBSE
T ss_pred             Cc------HHHHHHHhccCCCCeEEE----cCCCCHHHHHHHHhCCCEEE
Confidence            31      478888888888755543    34555578888888997644

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=97.31  E-value=0.044  Score=54.77  Aligned_cols=188  Identities=14%  Similarity=0.129  Sum_probs=128.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-C--CCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--GARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .++.++...++++-.+.+.++|=-.++..-++.    ..+.+...++.. .  .+.+....   .+.+.+.+|+++|...
T Consensus        23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS   98 (282)
T TIGR01858        23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRS   98 (282)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            478889999999999999998766554332221    233344444422 2  33444332   4678999999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=.|.          .+.+|+++..++++++|+..|+.|++-|-..-|.++.        ..++|+...++++   +.
T Consensus        99 VM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T  165 (282)
T TIGR01858        99 AMIDGSH----------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE---AT  165 (282)
T ss_pred             EeecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH---HH
Confidence            8875442          3578999999999999999999999888876444442        1467777766654   67


Q ss_pred             CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |+|.+.++=  .=|.-  .|.==.++++.+++.++ +||.+|+  .-|+.--....|+..|+.-|+
T Consensus       166 gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~~ai~~Gi~KiN  228 (282)
T TIGR01858       166 GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHG--ASDVPDEDVRRTIELGICKVN  228 (282)
T ss_pred             CcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEec--CCCCCHHHHHHHHHcCCeEEE
Confidence            998555432  22221  24333567788887775 4787776  556678889999999988663

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=97.31  E-value=0.043  Score=54.92  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=127.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCC--CcEEEEe---CChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEG--ARLPVLT---PNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~--~~l~~l~---~~~~di~~a~~~Gv  215 (426)
                      .+..+....++++-.+.+.++|=-.++..-++.+   ..+.+...++.   -..  +.+....   .+.+.+++|+++|.
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf  101 (286)
T PRK08610         25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMS---GFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF  101 (286)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence            4688888899999999999987665443222211   12223333332   122  3344433   46788999999999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhC
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~  289 (426)
                      ..|.+=.|.          .+.+|+++.-++++++|+..|+.|++-|-.+-|.++.      ..++|+...++++   +.
T Consensus       102 tSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~T  168 (286)
T PRK08610        102 TSVMIDASH----------SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KT  168 (286)
T ss_pred             CEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HH
Confidence            988885442          4578999999999999999999999988876444432      1478888777765   67


Q ss_pred             CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+|.+.++=  .=|.-  .|.==.++++.+++.++ +||.+|+  ..|..-.....|+..|+.-|
T Consensus       169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~~GI~Ki  230 (286)
T PRK08610        169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIPFGTAKI  230 (286)
T ss_pred             CCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHCCCeEE
Confidence            888554432  22221  23223456777777765 4787766  57888889999999998755

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.31  E-value=0.03  Score=56.01  Aligned_cols=197  Identities=14%  Similarity=0.118  Sum_probs=131.9

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhh
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKG  206 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~d  206 (426)
                      |++.+..+.  .+..+....++++-.+.+.+.|=-.++..-++.+    .+.+...++..   ..+.+....   .+.+.
T Consensus        14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~   89 (284)
T PRK12737         14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHLDHHEDLDD   89 (284)
T ss_pred             HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence            444444443  5788999999999999999987655443322221    22233333321   234444433   45788


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSK  278 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~  278 (426)
                      +.+|+++|...|.+=.|  .        .+.+++++..++++++|+..|+.|++-+-..-|.++.        ..++|+.
T Consensus        90 i~~ai~~GftSVMiDgS--~--------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~pee  159 (284)
T PRK12737         90 IKKKVRAGIRSVMIDGS--H--------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDA  159 (284)
T ss_pred             HHHHHHcCCCeEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHH
Confidence            99999999998877433  2        3678999999999999999999999888876555442        1468888


Q ss_pred             HHHHHHHHHhCCCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          279 VAYVAKELHDMGCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      ..++++   +.|+|.+.++=  .=|.-  .|.==.++++.+++.++ +||.+|+  .-|+.--....|++.|+.-|+
T Consensus       160 A~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiN  230 (284)
T PRK12737        160 AAEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVN  230 (284)
T ss_pred             HHHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence            777765   47998555542  22321  34323456778877765 4677665  567778889999999998664

>PRK05927 hypothetical protein; Provisional

Probab=97.28  E-value=0.04  Score=56.63  Aligned_cols=224  Identities=14%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh---Hh-cCCCcEEEEeC-------------Chh
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV---RD-LEGARLPVLTP-------------NLK  205 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~-------------~~~  205 (426)
                      ..++.++.++.++...+.|+..|=+.....|+     .+.+.+.+.+   ++ .|++.+-++.+             ..+
T Consensus        74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e  148 (350)
T PRK05927         74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQ  148 (350)
T ss_pred             cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHH
Confidence            36899999999999999999988776554543     2344444444   42 35565434332             235


Q ss_pred             hHHHHHHcCCCEEE---EeccCChHHHhhhcCCCHHH-HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAGAKEVA---IFASASEAFSKSNINCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~---i~~~~Sd~~~~~~~~~s~~e-~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      .+++..++|++.+.   +-+..+.  ....+  ++.. ..++=.++++.|+++|+++...+++  |-   +. +++..++
T Consensus       149 ~l~~Lk~aGl~~l~g~~~Et~~~~--~~~~~--~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~--G~---gE-t~e~ri~  218 (350)
T PRK05927        149 ALERLWDAGQRTIPGGGAEILSER--VRKII--SPKKMGPDGWIQFHKLAHRLGFRSTATMMF--GH---VE-SPEDILL  218 (350)
T ss_pred             HHHHHHHcCcccCCCCCchhCCHH--Hhhcc--CCCCCCHHHHHHHHHHHHHcCCCcCceeEE--ee---CC-CHHHHHH
Confidence            67788899997554   2222222  22221  1111 1233347888999999999887774  42   22 3455555


Q ss_pred             HHHHHHhC----CCCEEEEc------CCC---C---CCCHHHHHHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHHHHH
Q 014369          282 VAKELHDM----GCFEISLG------DTI---G---VGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQ  344 (426)
Q Consensus       282 ~~~~l~~~----Gad~I~l~------DT~---G---~~~P~~v~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLaAl~  344 (426)
                      .+..+.+.    |--.--|+      +|-   .   ..+|.+..++++..|-.+|+.+   |.. .-..+|.--+..|+.
T Consensus       219 ~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~---~i~~~w~~~G~~~~q~~L~  295 (350)
T PRK05927        219 HLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFD---HIAASWFGEGKEEGAKGLH  295 (350)
T ss_pred             HHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCC---cccCCccccCHHHHHHHHh
Confidence            44444443    31111134      453   1   4788999999988888777532   211 223456677789999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +||+-+++++..====|.|+...+ ..++++...++..|..
T Consensus       296 ~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~  335 (350)
T PRK05927        296 YGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI  335 (350)
T ss_pred             CCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence            999999988743111122222333 3688888888877764

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.25  E-value=0.034  Score=55.53  Aligned_cols=188  Identities=18%  Similarity=0.269  Sum_probs=126.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .+..+....++++-.+.+-++|=-.++..-+.    ...+.+...++.   -.++.+....   .+.+.++.|+++|.+.
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~----~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftS  100 (283)
T PRK07998         25 TTNLETTISILNAIERSGLPNFIQIAPTNAQL----SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTS  100 (283)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCE
Confidence            46788888899999999999876655432221    122333333332   2234444433   4678999999999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      |.+=.|          ..+.+++++..++++++|+..|+.|++-+-..-|.++.      ..++|+...++++   +.|+
T Consensus       101 VM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~---~Tgv  167 (283)
T PRK07998        101 VMIDGA----------ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVE---RTGC  167 (283)
T ss_pred             EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHH---HhCc
Confidence            888433          24678999999999999999999998888775454432      1468887766554   6788


Q ss_pred             CEEEEcC--CCCCCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          292 FEISLGD--TIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       292 d~I~l~D--T~G~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |.+.++=  .=|.-. |.-=.++++.+++..+ +||.+|+=  -|..--....|+..|+.-|+
T Consensus       168 D~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiN  227 (283)
T PRK07998        168 DMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGG--SGIPPEILRSFVNYKVAKVN  227 (283)
T ss_pred             CeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCC--CCCCHHHHHHHHHcCCcEEE
Confidence            8554432  222111 4322467888888775 47888764  57777888999999988553

>PRK08508 biotin synthase; Provisional

Probab=97.25  E-value=0.1  Score=51.84  Aligned_cols=216  Identities=13%  Similarity=0.059  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEe-cCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe--CChhhHHHHHHcCCCE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT--PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG-~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~--~~~~di~~a~~~Gv~~  217 (426)
                      ++.++.++.++...+.|+..|-+. .--..   +. .+.+.+.+.++.+    +++.+.+..  .+.+.++...++|++.
T Consensus        40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~---~~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~  115 (279)
T PRK08508         40 KDIEQIVQEAKMAKANGALGFCLVTSGRGL---DD-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFS  115 (279)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeccCCC---Cc-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence            699999999999999999877552 11110   00 1334445444432    444433221  2567888889999999


Q ss_pred             EEEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          218 VAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      +.+-+-+++.+..... +.+    ++...+.++.|++.|+++...+.  +|.   + -+++++.+.+..+.+.+.+.|-+
T Consensus       116 ~~~~lEt~~~~~~~i~~~~~----~~~~l~~i~~a~~~Gi~v~sg~I--~Gl---G-Et~ed~~~~l~~lr~L~~~svpl  185 (279)
T PRK08508        116 YNHNLETSKEFFPKICTTHT----WEERFQTCENAKEAGLGLCSGGI--FGL---G-ESWEDRISFLKSLASLSPHSTPI  185 (279)
T ss_pred             EcccccchHHHhcCCCCCCC----HHHHHHHHHHHHHcCCeecceeE--Eec---C-CCHHHHHHHHHHHHcCCCCEEee
Confidence            9988777664433221 233    34445667788999998887666  442   2 24788899999999999874432


Q ss_pred             ------cCCC---CCCCHHHHHHHHHHHHHhcCCceEEEEeC--CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          297 ------GDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLH--DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       297 ------~DT~---G~~~P~~v~~li~~l~~~~p~~~i~~H~H--Nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                            ++|-   ...+|.+..++++..|-.+|...|-+-+=  ..+|   ..-..++.+||+.+  -++++=       
T Consensus       186 ~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~n~~--~~g~~l-------  253 (279)
T PRK08508        186 NFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGANAI--VIGDYL-------  253 (279)
T ss_pred             CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCCcce--eecCcc-------
Confidence                  2221   23678899999998888888755555431  1111   13456788998853  222221       


Q ss_pred             CCCcccHHHHHHHHHhCCCCC
Q 014369          366 ASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       366 raGNa~lEevv~~L~~lG~~~  386 (426)
                      -+.+.+.++=..+++.+|...
T Consensus       254 t~~g~~~~~d~~~~~~~~~~~  274 (279)
T PRK08508        254 TTKGEAPKKDIEKLKSLGFEI  274 (279)
T ss_pred             cCCCCChHHHHHHHHHcCCCc
Confidence            133345566666888888763

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.24  E-value=0.049  Score=51.81  Aligned_cols=150  Identities=29%  Similarity=0.334  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+.++-+++++.|.+.|++.||+++- +|.       ..+.++.++ +.+++.+.+-+ -+.++++.++++|++.+.-. 
T Consensus        13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp~-------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP-   83 (201)
T PRK06015         13 DDVEHAVPLARALAAGGLPAIEITLR-TPA-------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP-   83 (201)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Ccc-------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC-
Confidence            47888999999999999999999974 332       334555554 45666666544 57899999999999866433 


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                      ..+                   .+++++|+++|+.+.         |  +-.+|.++..    +.++|++.|-+      
T Consensus        84 ~~~-------------------~~vi~~a~~~~i~~i---------P--G~~TptEi~~----A~~~Ga~~vK~------  123 (201)
T PRK06015         84 GTT-------------------QELLAAANDSDVPLL---------P--GAATPSEVMA----LREEGYTVLKF------  123 (201)
T ss_pred             CCC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHHHHH----HHHCCCCEEEE------
Confidence            121                   378889999998765         2  3356666544    55799998876      


Q ss_pred             CCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       303 ~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                       .|...   ..+++.|+.-+|.++|-    -+=|....|.-.=+.+|+.
T Consensus       124 -FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~  167 (201)
T PRK06015        124 -FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV  167 (201)
T ss_pred             -CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence             34322   37788888888875554    3557777888888888865

>PRK06801 hypothetical protein; Provisional

Probab=97.24  E-value=0.055  Score=54.15  Aligned_cols=186  Identities=16%  Similarity=0.173  Sum_probs=124.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .++.++...++++-.+.+.++|=-.++..-++    ...+.+...++..   ..+.+....   ...+.++.|++.|++.
T Consensus        25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftS  100 (286)
T PRK06801         25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKY----ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSS  100 (286)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhc----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcE
Confidence            47889999999999999999876554432222    1233333444322   234444433   3578899999999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----------CCCCHHHHHHHHHHHH
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAIPPSKVAYVAKELH  287 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----------~r~~~~~l~~~~~~l~  287 (426)
                      |.+=.|          +.+.++.++..++++++|+.+|+.|++.+-.. |..+.          ..++|+...++++   
T Consensus       101 Vm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v-gg~e~~v~~~~~~~~~~T~pe~a~~f~~---  166 (286)
T PRK06801        101 VMFDGS----------TLEYEENVRQTREVVKMCHAVGVSVEAELGAV-GGDEGGALYGEADSAKFTDPQLARDFVD---  166 (286)
T ss_pred             EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcc-cCCCCCcccCCcccccCCCHHHHHHHHH---
Confidence            888433          23568999999999999999999988767653 33221          1356666555543   


Q ss_pred             hCCCCEEEEcCCCCCC------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          288 DMGCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +.|+|.+.+  ++|..      .|.-=.++++.+++.++ +||.+|+  .-|....|...++.+|++-|+.
T Consensus       167 ~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHG--GSgi~~e~~~~~i~~Gi~KINv  232 (286)
T PRK06801        167 RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHG--GSGISDADFRRAIELGIHKINF  232 (286)
T ss_pred             HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEe
Confidence            579998887  33321      22222345667777665 4787776  4477789999999999997754

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=97.21  E-value=0.082  Score=52.96  Aligned_cols=187  Identities=13%  Similarity=0.136  Sum_probs=127.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .+..+....++++-.+.+-+.|=-.++..-++.    ..+.+...++.   -..+.+....   .+.+.+..|+++|...
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS  100 (286)
T PRK12738         25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS  100 (286)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence            468888899999999999998766544322211    12333333332   1234444433   4678899999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~----~----r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=.|          ..+.+|+++..++++++|+.+|+.|++-|-.+-|.++.    .    .++|+...++++   +.
T Consensus       101 VM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~---~T  167 (286)
T PRK12738        101 AMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT  167 (286)
T ss_pred             EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH---Hh
Confidence            887433          24578999999999999999999999888876444442    1    467887777654   56


Q ss_pred             CCCEEEEcC--CCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          290 GCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       290 Gad~I~l~D--T~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+|.+.++=  .=|.-  .|.==.++++.+++.++ +||.+|+  .-|..--....|++.|+.-|
T Consensus       168 gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHG--gSG~~~e~~~kai~~GI~Ki  229 (286)
T PRK12738        168 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIELGVTKV  229 (286)
T ss_pred             CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHcCCeEE
Confidence            898555432  22221  34444667888888875 4787776  55666788999999998855

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=97.18  E-value=0.015  Score=58.16  Aligned_cols=186  Identities=19%  Similarity=0.208  Sum_probs=123.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .++.+....++++-.+.+.++|=-.++..-++.    ..+.+...++.   ..++.+....   .+.+.+++|+++|.+.
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftS   99 (287)
T PF01116_consen   24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTS   99 (287)
T ss_dssp             -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccc
Confidence            578889999999999999997655443211111    11223333332   2244444432   5688999999999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---------GAIPPSKVAYVAKELHD  288 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---------~r~~~~~l~~~~~~l~~  288 (426)
                      |.+=.|          ..+.+|+++.-++++++|+..|+.|++-+-..-|.++.         ..++|+...++++   +
T Consensus       100 VM~DgS----------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~---~  166 (287)
T PF01116_consen  100 VMIDGS----------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE---E  166 (287)
T ss_dssp             EEEE-T----------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH---H
T ss_pred             ccccCC----------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH---H
Confidence            877443          24578999999999999999999999988876555432         2368888777665   6


Q ss_pred             CCCCEEEEcCCCC------CC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          289 MGCFEISLGDTIG------VG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       289 ~Gad~I~l~DT~G------~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|+|.+.++  +|      ..  .|.==.++++.+++.+|.+||.+|+  .-|+.--....|+..|+.-|
T Consensus       167 TgvD~LAva--iGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~Ki  232 (287)
T PF01116_consen  167 TGVDALAVA--IGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKI  232 (287)
T ss_dssp             HTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEE
T ss_pred             hCCCEEEEe--cCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEE
Confidence            799975543  44      22  4544467788888888445777655  67788889999999998866

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.16  E-value=0.1  Score=47.67  Aligned_cols=171  Identities=21%  Similarity=0.211  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh-HhcCC--CcEEEEe--CC--------hhhHHHHHH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV-RDLEG--ARLPVLT--PN--------LKGFEAAIA  212 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i-~~~~~--~~l~~l~--~~--------~~di~~a~~  212 (426)
                      +.+.-.++++.|.+.|++.|++..              ++++.+ +..++  ..+.+-+  .+        .+.++.|.+
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~   76 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID   76 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence            677778899999999999999974              233333 23333  4433322  22        245678889


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|++.+-+..+..     .....+.++.++.++++++.+ +.++.+..+..     |... .+++.+.++++.+.+.|++
T Consensus        77 ~Gad~i~v~~~~~-----~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~  144 (201)
T cd00945          77 LGADEIDVVINIG-----SLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGAD  144 (201)
T ss_pred             cCCCEEEEeccHH-----HHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCC
Confidence            9999988865421     111112456666677777666 56888775553     3222 4788888888888888988


Q ss_pred             EEEEcCCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          293 EISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       293 ~I~l~DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|  +++.|..    ....+..+.+.+..   ..+|.+-+-.+   ...+...++.+|++.+
T Consensus       145 ~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~  198 (201)
T cd00945         145 FI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI  198 (201)
T ss_pred             EE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence            65  5666632    56666655544321   22344433222   3577888888998865

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=97.15  E-value=0.13  Score=47.97  Aligned_cols=172  Identities=18%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEec
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~~  222 (426)
                      ..+.-.+.++.+.+.|++.||++. .....+|.+....+.++.++..++..+  -.++.+ .+-++.+.++|++.|.+..
T Consensus         9 ~~~~~~~~~~~~~~~g~d~i~~~~-~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~   87 (210)
T TIGR01163         9 DFARLGEEVKAVEEAGADWIHVDV-MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHP   87 (210)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEcc
Confidence            344567899999999999999972 111112222222345556654444443  345554 3557888899999987754


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD  298 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D  298 (426)
                      ...+                .....++.+|++|+.+...++     +   .++.+.+.++     ..++|.|.+    +-
T Consensus        88 ~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~g  138 (210)
T TIGR01163        88 EASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNPG  138 (210)
T ss_pred             CCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcCC
Confidence            3221                224566788888987753221     1   1233443333     235677665    33


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          299 TIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +.|...+....+.++.+++..+    ..++.+=    -|.-..|.-..++.||+.|=
T Consensus       139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~ii  191 (210)
T TIGR01163       139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILV  191 (210)
T ss_pred             CCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEE
Confidence            4443223333345566655432    1234442    37778888888999999663

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.14  E-value=0.072  Score=53.29  Aligned_cols=188  Identities=14%  Similarity=0.151  Sum_probs=127.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .++.+....++++-.+.+.+.|=-.++..-++.    ..+.+...++.   ...+.+....   .+.+.++.|+++|...
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftS  100 (284)
T PRK09195         25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRS  100 (284)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            578888899999999999998765544322221    12233333332   1234444433   3578899999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++-|-..-|.++.        ..++|+...++++   +.
T Consensus       101 VM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T  167 (284)
T PRK09195        101 VMIDGS----------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---AT  167 (284)
T ss_pred             EEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence            887433          24578999999999999999999999888776444432        1478888777665   67


Q ss_pred             CCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          290 GCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       290 Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |+|.+.++  -.=|.-  .|.==.++++.+++.++ +||.+|+=  -|..-.....|++.|+.-|+
T Consensus       168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGg--SG~~~e~~~~ai~~Gi~KiN  230 (284)
T PRK09195        168 GIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGA--SGLPTKDIQQTIKLGICKVN  230 (284)
T ss_pred             CcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecC--CCCCHHHHHHHHHcCCeEEE
Confidence            88855443  233331  24333456777777775 47877764  57778899999999988553

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.13  E-value=0.026  Score=54.51  Aligned_cols=152  Identities=22%  Similarity=0.280  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-----hcCCCcEEEEe-CChhhHHHHHHcCCCEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-----DLEGARLPVLT-PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-----~~~~~~l~~l~-~~~~di~~a~~~Gv~~V  218 (426)
                      -+.++-+++++.|.+.|++.||+++-. |       +..+.++.++     +.|++.+.+-+ -+.++++.|+++|++.+
T Consensus        24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi   95 (222)
T PRK07114         24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI   95 (222)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence            478889999999999999999999732 2       1233344332     33556665544 58899999999999866


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--  296 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--  296 (426)
                      .-. ..+                   .+++++++++|+.+.         |  +-.+|.++..    +.++|++.|-|  
T Consensus        96 VsP-~~~-------------------~~v~~~~~~~~i~~i---------P--G~~TpsEi~~----A~~~Ga~~vKlFP  140 (222)
T PRK07114         96 VTP-LFN-------------------PDIAKVCNRRKVPYS---------P--GCGSLSEIGY----AEELGCEIVKLFP  140 (222)
T ss_pred             ECC-CCC-------------------HHHHHHHHHcCCCEe---------C--CCCCHHHHHH----HHHCCCCEEEECc
Confidence            443 121                   378889999998765         2  3356666554    55799997766  


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH--HHHHHHHHcCCCEE
Q 014369          297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL--PNILISLQMGISTV  350 (426)
Q Consensus       297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~--ANaLaAl~aGa~~V  350 (426)
                      +++.|       ..+++.|+.-+|.+++--    +=|...  .|.-.=+.+|+..|
T Consensus       141 A~~~G-------~~~ikal~~p~p~i~~~p----tGGV~~~~~n~~~yl~aGa~av  185 (222)
T PRK07114        141 GSVYG-------PGFVKAIKGPMPWTKIMP----TGGVEPTEENLKKWFGAGVTCV  185 (222)
T ss_pred             ccccC-------HHHHHHHhccCCCCeEEe----CCCCCcchhcHHHHHhCCCEEE
Confidence            34433       256777887777644432    445554  57777777887765

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit

Probab=97.04  E-value=0.064  Score=54.30  Aligned_cols=230  Identities=12%  Similarity=0.053  Sum_probs=129.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc--------c--ccc-CHHHHHHHhHhcC---CCcEEEEeC---Ch
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV--------P--QLA-DARDVMEAVRDLE---GARLPVLTP---NL  204 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~--------p--~~~-D~~~v~~~i~~~~---~~~l~~l~~---~~  204 (426)
                      ...++.++.++.++.+.+.|+..|-+.+...|+..        .  .+. ..+.+.+.++.+.   +. +..+.+   +.
T Consensus        32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~lt~  110 (322)
T TIGR03550        32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGVMSR  110 (322)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCCCCH
Confidence            34689999999999999999999887655444310        0  000 0122222333222   22 122222   45


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      +.++...++|++ +++..-+.........+.  ++.+..+.-.+.++.|+++|+++...++  ||. .+   +++...+.
T Consensus       111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i--~G~-gE---t~ed~~~~  183 (322)
T TIGR03550       111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGIL--IGI-GE---TREERAES  183 (322)
T ss_pred             HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceee--EeC-CC---CHHHHHHH
Confidence            678888888875 344432221111010111  1111122346888999999999887776  552 22   35555555


Q ss_pred             HHHHHhCC-----CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          283 AKELHDMG-----CFEISL------GDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       283 ~~~l~~~G-----ad~I~l------~DT~----G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..+.++.     ++.+.+      +.|-    ...++.+..++++..|=.+| ...|..-.  .+|  ......|+.+|
T Consensus       184 l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~--~l~--~~~~~~~L~~G  259 (322)
T TIGR03550       184 LLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP--NLN--REDYRLLLDAG  259 (322)
T ss_pred             HHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--ccC--hHHHHHHHhcC
Confidence            55554432     543321      2442    24567888888888877775 33333332  333  21468899999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHhCCCCC
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSGLGVET  386 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGN-a~lEevv~~L~~lG~~~  386 (426)
                      |+-+++|+.=.|+   +....|. .+.++++.+++..|..+
T Consensus       260 and~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~p  297 (322)
T TIGR03550       260 IDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFTL  297 (322)
T ss_pred             CccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCCc
Confidence            9999999641122   0001232 47899999999888753

This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=97.04  E-value=0.098  Score=48.82  Aligned_cols=154  Identities=23%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEE-eCChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.|.+.|++.||+.+- ++       +..+.++.++ ..++..+.+- +-+..+++.++++|.+.|+... 
T Consensus        14 ~~~~~~~~~~~l~~~G~~~vev~~~-~~-------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~-   84 (190)
T cd00452          14 DAEDALALAEALIEGGIRAIEITLR-TP-------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG-   84 (190)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC-
Confidence            5778889999999999999999863 21       1223444444 4455655553 3568899999999999997532 


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                       ++                  .+++++++++|..+.      .|     -.+++++.    .+.++|+|.|.+ +-.   
T Consensus        85 -~~------------------~~~~~~~~~~~~~~i------~g-----v~t~~e~~----~A~~~Gad~i~~-~p~---  126 (190)
T cd00452          85 -LD------------------PEVVKAANRAGIPLL------PG-----VATPTEIM----QALELGADIVKL-FPA---  126 (190)
T ss_pred             -CC------------------HHHHHHHHHcCCcEE------CC-----cCCHHHHH----HHHHCCCCEEEE-cCC---
Confidence             11                  257778888888764      12     22455533    345799999998 332   


Q ss_pred             CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       304 ~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .|. -.++++.+++.+|..++..=+    |.-..|...-+++|++.|-
T Consensus       127 ~~~-g~~~~~~l~~~~~~~p~~a~G----GI~~~n~~~~~~~G~~~v~  169 (190)
T cd00452         127 EAV-GPAYIKALKGPFPQVRFMPTG----GVSLDNAAEWLAAGVVAVG  169 (190)
T ss_pred             ccc-CHHHHHHHHhhCCCCeEEEeC----CCCHHHHHHHHHCCCEEEE
Confidence            232 455677777777654555543    4455899999999988763

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PLN02428 lipoic acid synthase

Probab=97.02  E-value=0.059  Score=55.42  Aligned_cols=142  Identities=16%  Similarity=0.196  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~  216 (426)
                      ....++..++++.+.+.|+++|-+.+....++ |.  .....++++.++. .|.+++.++.+.    .+-++...++|.+
T Consensus       129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d  207 (349)
T PLN02428        129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLD  207 (349)
T ss_pred             CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCC
Confidence            34567778899999999999887766532211 21  1223455666664 477888888764    4567888899999


Q ss_pred             EEEEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          217 EVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .+..-+-+++.+.+ +++   .+.++.+    ++++.|+++  |+.+..+++.-+|      -+++++.+.++.+.+.|+
T Consensus       208 ~i~hnlETv~rL~~-~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~MvGLG------ET~Edv~e~l~~Lrelgv  276 (349)
T PLN02428        208 VFAHNIETVERLQR-IVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIMLGLG------ETDEEVVQTMEDLRAAGV  276 (349)
T ss_pred             EEccCccCcHHHHH-HhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEEecC------CCHHHHHHHHHHHHHcCC
Confidence            98877666665433 333   3555554    566678888  9988888885432      257899999999999999


Q ss_pred             CEEEEc
Q 014369          292 FEISLG  297 (426)
Q Consensus       292 d~I~l~  297 (426)
                      |.+.|.
T Consensus       277 d~vtig  282 (349)
T PLN02428        277 DVVTFG  282 (349)
T ss_pred             CEEeec
Confidence            999664

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=96.97  E-value=0.037  Score=53.93  Aligned_cols=199  Identities=15%  Similarity=0.109  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccc--cCHHHHHHHhHhcCCCcEEEEeC-------C-----h-----------
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDLEGARLPVLTP-------N-----L-----------  204 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~-------~-----~-----------  204 (426)
                      -.+.++.+.++|++.||++......+.|.+  .+.+++.+.++. .++++.++.+       +     .           
T Consensus        15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~   93 (275)
T PRK09856         15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK   93 (275)
T ss_pred             HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence            355677788999999999632111111222  123333333332 3455544321       1     0           


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV  282 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~  282 (426)
                      +.++.|...|++.|.++...... . .......+...+.+.+++++|+++|+++.  +...  .|..+  ..+++.+.++
T Consensus        94 ~~i~~a~~lGa~~i~~~~~~~~~-~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE~~--~~~~~~~~~t~~~~~~l  167 (275)
T PRK09856         94 LAMDMAKEMNAGYTLISAAHAGY-L-TPPNVIWGRLAENLSELCEYAENIGMDLI--LEPL--TPYESNVVCNANDVLHA  167 (275)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EecC--CCCcccccCCHHHHHHH
Confidence            12456777899998886431100 0 00011235666777888999999998664  2211  11111  2245565555


Q ss_pred             HHHHHhCCCC-EEEEcCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          283 AKELHDMGCF-EISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       283 ~~~l~~~Gad-~I~l~DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      ++   +.+-+ .-.+.|+.=. ....++.+.++.+.   +. -..+|++|..+-.                       .+
T Consensus       168 ~~---~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~---~r-I~~vHi~D~~~~~-----------------------~~  217 (275)
T PRK09856        168 LA---LVPSPRLFSMVDICAPYVQAEPVMSYFDKLG---DK-LRHLHIVDSDGAS-----------------------DT  217 (275)
T ss_pred             HH---HcCCCcceeEEeecchhcCCCCHHHHHHHhC---Cc-EEEEEEEcCCCCC-----------------------CC
Confidence            54   44422 2233477432 12233344444332   32 4788999987521                       11


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                      ...+| .|+.+..+++..|+..|++.
T Consensus       218 ~~~pG-~G~id~~~i~~~L~~~gy~g  242 (275)
T PRK09856        218 HYIPG-EGKMPLRELMRDIIDRGYEG  242 (275)
T ss_pred             CcCCC-CCCCCHHHHHHHHHHcCCCc
Confidence            22334 68999999999999988763

>TIGR01496 DHPS dihydropteroate synthase

Probab=96.96  E-value=0.15  Score=50.10  Aligned_cols=187  Identities=19%  Similarity=0.231  Sum_probs=105.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHH---HHHHhHhc---CCCcEEEEeCChhhHHHHHHcC
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARD---VMEAVRDL---EGARLPVLTPNLKGFEAAIAAG  214 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~---v~~~i~~~---~~~~l~~l~~~~~di~~a~~~G  214 (426)
                      +..++.+..++.++.+.+.|.+.|++|...+ |. .+.....+|   +...++.+   .+..++.=+.+.+-++.|++.|
T Consensus        17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G   95 (257)
T TIGR01496        17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEAG   95 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcC
Confidence            3356889999999999999999999996443 32 222211222   33333322   2555655667889999999999


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC----------CHHHHHHHHH
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI----------PPSKVAYVAK  284 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~----------~~~~l~~~~~  284 (426)
                      ++.|.=.-..              .    ..++++.+++.|..+.+  +..-|.|.....          -.+++.+.++
T Consensus        96 ~~iINsis~~--------------~----~~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~  155 (257)
T TIGR01496        96 ADIINDVSGG--------------Q----DPAMLEVAAEYGVPLVL--MHMRGTPRTMQENPHYEDVVEEVLRFLEARAE  155 (257)
T ss_pred             CCEEEECCCC--------------C----CchhHHHHHHcCCcEEE--EeCCCCCcccccCCCcccHHHHHHHHHHHHHH
Confidence            8865532111              0    12445557788887763  433333322100          1145566677


Q ss_pred             HHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCceEEE------------EeCCCcCcHHHHHHHHHHc
Q 014369          285 ELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVEKLAV------------HLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       285 ~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~~i~~------------H~HNd~GlA~ANaLaAl~a  345 (426)
                      .+.+.|++  .|.|==-+|.. ++.+-.++++.++.-    +|. -+++            -..+..+..++-+..|++.
T Consensus       156 ~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~-l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~  234 (257)
T TIGR01496       156 ELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPL-LVGASRKSFIGALLGTPPEERLEGTLAASAYAVQK  234 (257)
T ss_pred             HHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHc
Confidence            78889984  55442233332 344445555554421    232 1332            1223334445555667888


Q ss_pred             CCCEE
Q 014369          346 GISTV  350 (426)
Q Consensus       346 Ga~~V  350 (426)
                      ||++|
T Consensus       235 Ga~ii  239 (257)
T TIGR01496       235 GADIV  239 (257)
T ss_pred             CCCEE
Confidence            88877

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK05926 hypothetical protein; Provisional

Probab=96.91  E-value=0.16  Score=52.70  Aligned_cols=228  Identities=12%  Similarity=0.093  Sum_probs=130.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC------------C-hhhH
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP------------N-LKGF  207 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~------------~-~~di  207 (426)
                      ...++.++.++.++.. +.|+..|=+-....|..  .+....++++.++ ..|++.+.++.+            . .+.+
T Consensus        96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l  172 (370)
T PRK05926         96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVL  172 (370)
T ss_pred             cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence            3467899999999988 79998777654333321  1111234444555 347777776642            1 2347


Q ss_pred             HHHHHcCCCEEEEe-c-cCChHHHh-hh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIF-A-SASEAFSK-SN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~-~-~~Sd~~~~-~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ++..++|++.+... . ..++...+ .. -.++.+    +-.++++.|+++|+++.+.+.  || ..   -+++..++.+
T Consensus       173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~----e~l~~i~~a~~~Gi~~~sgmi--~G-~g---Et~edrv~~l  242 (370)
T PRK05926        173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ----GFLEIHKTAHSLGIPSNATML--CY-HR---ETPEDIVTHM  242 (370)
T ss_pred             HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCcccCceE--Ee-CC---CCHHHHHHHH
Confidence            88899999976642 1 12232221 11 133443    335788899999999987754  43 12   2467777777


Q ss_pred             HHHHhCCCCE-----EEE-----cCCC--------CCCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHHHHHHHHHH
Q 014369          284 KELHDMGCFE-----ISL-----GDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       284 ~~l~~~Gad~-----I~l-----~DT~--------G~~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      ..+.+...+.     +..     .+|.        +..++.+..++++..|=.+++ ..|..-. +.  +|..-+..|+.
T Consensus       243 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w-~~--~G~~~~q~~L~  319 (370)
T PRK05926        243 SKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW-NY--LGIEVALHLLS  319 (370)
T ss_pred             HHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc-hh--cCHHHHHHHHh
Confidence            7787775443     322     2332        124455555555544433332 1233333 33  35567788999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  385 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~  385 (426)
                      +||+-+++|+..=--=+.|+...+ -.+.++++.+.+..|..
T Consensus       320 ~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~  361 (370)
T PRK05926        320 CGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRI  361 (370)
T ss_pred             CCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            999999999975221112221222 24567777777776654

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=96.91  E-value=0.18  Score=51.86  Aligned_cols=196  Identities=17%  Similarity=0.157  Sum_probs=122.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccC------------HHHHHHHhHhcCCCcEEEEe---CC--h
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LAD------------ARDVMEAVRDLEGARLPVLT---PN--L  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D------------~~~v~~~i~~~~~~~l~~l~---~~--~  204 (426)
                      .+..++...++++-.+...++|=-.++..-++...  +.+            ...++..+.+-..+.+....   .+  .
T Consensus        28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~  107 (350)
T PRK09197         28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLL  107 (350)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence            57889999999999999999876654432221110  111            11222222221234444433   34  5


Q ss_pred             hhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--
Q 014369          205 KGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--  271 (426)
Q Consensus       205 ~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--  271 (426)
                      +.++.++++|           ...|.+=.|  .        .+.+++++.-++++++|+..|+.|++-|-..-|.++.  
T Consensus       108 ~~i~~ai~~g~~~v~~a~~~gftSVMiDgS--~--------lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~  177 (350)
T PRK09197        108 PWIDGLLDAGEKHFAAGGKPLFSSHMIDLS--E--------EPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVD  177 (350)
T ss_pred             HHHHHHHHhhHHHHHhcCCCCceeEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCcc
Confidence            5677777766           777755333  2        4678999999999999999999999988876554432  


Q ss_pred             --------CCCCHHHHHHHHHHHH-hCCCC--EEEEcCCCCCCC---HHHHHHHHHHHHHhc--------CCceEEEEeC
Q 014369          272 --------GAIPPSKVAYVAKELH-DMGCF--EISLGDTIGVGT---PGTVVPMLEAVMAVV--------PVEKLAVHLH  329 (426)
Q Consensus       272 --------~r~~~~~l~~~~~~l~-~~Gad--~I~l~DT~G~~~---P~~v~~li~~l~~~~--------p~~~i~~H~H  329 (426)
                              ..++|+...+++++.- ..|+|  .|.+.-.=|.-.   |.==.++++.+++.+        +.+||.+|+=
T Consensus       178 ~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGg  257 (350)
T PRK09197        178 NSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGG  257 (350)
T ss_pred             ccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCC
Confidence                    1478888888776431 12336  344444444432   333345566666665        1457887764


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEe
Q 014369          330 DTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       330 Nd~GlA~ANaLaAl~aGa~~VD  351 (426)
                        -|+.--....|++.|+.-|+
T Consensus       258 --SGipde~i~~ai~~GI~KIN  277 (350)
T PRK09197        258 --SGSTLEEIREAVSYGVVKMN  277 (350)
T ss_pred             --CCCCHHHHHHHHHCCCeeEE
Confidence              58888899999999988654

>PRK06245 cofG FO synthase subunit 1; Reviewed

Probab=96.88  E-value=0.17  Score=51.31  Aligned_cols=229  Identities=15%  Similarity=0.117  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-c----cccC--HHHHHHHhHhc----CCC-cEEEEeC---ChhhHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-P----QLAD--ARDVMEAVRDL----EGA-RLPVLTP---NLKGFE  208 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p----~~~D--~~~v~~~i~~~----~~~-~l~~l~~---~~~di~  208 (426)
                      .++.++.++.++.+.+.|+..|-+...-.|... .    .+.+  ..+..+.++.+    ... .+..+.+   +.+.++
T Consensus        40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~  119 (336)
T PRK06245         40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEME  119 (336)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHH
Confidence            689999999999999999999888643332210 0    0000  12233333221    111 1112222   345667


Q ss_pred             HHHHcCCCEEEEec-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH---HH
Q 014369          209 AAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY---VA  283 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~-~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~---~~  283 (426)
                      ...++|+. +.+.. +.++...+.. -.++ ....++..+.++.|++.|+.+...+++  |.   +. +.+...+   .+
T Consensus       120 ~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~-~~~~~~~l~~i~~a~~~Gi~~~~~~i~--G~---gE-t~ed~~~~l~~l  191 (336)
T PRK06245        120 KLKEVNAS-MGLMLEQTSPRLLNTVHRGSP-GKDPELRLETIENAGKLKIPFTTGILI--GI---GE-TWEDRAESLEAI  191 (336)
T ss_pred             HHHHhCCC-CCCCccccchhhHHhhccCCC-CCCHHHHHHHHHHHHHcCCceeeeeee--EC---CC-CHHHHHHHHHHH
Confidence            66676654 34432 2344443211 1011 112334467888999999998877764  42   22 2344444   33


Q ss_pred             HHH-HhCC-CCEEEE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          284 KEL-HDMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       284 ~~l-~~~G-ad~I~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +.+ .+.| ++.|.+      +.|    ....++.+..++++..|..+|. .+.+-.--.+|.  .-...++.+||+-++
T Consensus       192 ~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~  268 (336)
T PRK06245        192 AELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLG  268 (336)
T ss_pred             HHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCcccc
Confidence            333 2332 444442      222    2245678889999998888864 232222124444  334566999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +|+...|+=-.+. .. ..++|+++.+++..|..
T Consensus       269 g~~~~~~~~~~~~-~~-~~~~~~~~~~i~~~g~~  300 (336)
T PRK06245        269 GISPVTKDYVNPE-YP-WPDIEELREILEEAGWP  300 (336)
T ss_pred             CCccCCCceeCCC-CC-CCCHHHHHHHHHHcCCC
Confidence            9988655511111 12 25789999999988764

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=96.84  E-value=0.35  Score=48.33  Aligned_cols=189  Identities=15%  Similarity=0.183  Sum_probs=126.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .+..++...++++-.+.+-++|=-.++..-++.+    .+.+...++   +...+.+....   .+.+.++.|++.|++.
T Consensus        25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ts  100 (281)
T PRK06806         25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTS  100 (281)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            5788898999999999999987655543322222    222222222   11233444433   3577889999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-------CCCCHHHHHHHHHHHHhCC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-------GAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-------~r~~~~~l~~~~~~l~~~G  290 (426)
                      |.+=.+          ..+.++.++..++++++|++.|..+.+.+-.. |..+.       +-++|+.+.++++   +.|
T Consensus       101 Vm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl-G~~d~~~~~~g~s~t~~eea~~f~~---~tg  166 (281)
T PRK06806        101 VMFDGS----------HLPLEENIQKTKEIVELAKQYGATVEAEIGRV-GGSEDGSEDIEMLLTSTTEAKRFAE---ETD  166 (281)
T ss_pred             EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE-CCccCCcccccceeCCHHHHHHHHH---hhC
Confidence            888543          24678999999999999999999998777653 42221       1356666555443   579


Q ss_pred             CCEEEE--cCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          291 CFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       291 ad~I~l--~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +|.+.+  .=..|.-  .|.-=.++++.+++.++ +||..|+  .-|....|...++++|++-|...
T Consensus       167 ~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~  230 (281)
T PRK06806        167 VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINVA  230 (281)
T ss_pred             CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence            998888  4444432  12223456777777765 4677766  45888899999999999987653

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.077  Score=50.06  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=115.8

Q ss_pred             HHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCC----CcEEEEeCCh-hhHHHHHHcCCCEEEEecc
Q 014369          153 LIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG----ARLPVLTPNL-KGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       153 I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~----~~l~~l~~~~-~di~~a~~~Gv~~V~i~~~  223 (426)
                      =++.|.++|.+.+-+    |.|+     |+++=-.-+.+.+|+..+    ...-+++.+. .-++..+.+|++.+.+..-
T Consensus        22 e~~~~l~~GadwlHlDVMDg~FV-----pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E   96 (224)
T KOG3111|consen   22 ECKKMLDAGADWLHLDVMDGHFV-----PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYE   96 (224)
T ss_pred             HHHHHHHcCCCeEEEeeeccccc-----CCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence            356678899997666    4444     444333456777775322    3445677775 4678888999997766542


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE---EcCC-
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS---LGDT-  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~---l~DT-  299 (426)
                                      +.+...++++++|+.|+++.+.+-     |   .++.+.+..++.     -+|.+-   +.=- 
T Consensus        97 ----------------~~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~-----~~D~vLvMtVePGF  147 (224)
T KOG3111|consen   97 ----------------ATQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAE-----HVDMVLVMTVEPGF  147 (224)
T ss_pred             ----------------eccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhc-----cccEEEEEEecCCC
Confidence                            233356889999999999875442     2   256677766664     222211   1111 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML  379 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L  379 (426)
                      -|.-.-++.-.-++.||+++|...|++    |=|++..|+-.+.+|||+.+=   .|-+-       -|-.+-.+++..|
T Consensus       148 GGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iV---aGsav-------f~a~d~~~vi~~l  213 (224)
T KOG3111|consen  148 GGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIV---AGSAV-------FGAADPSDVISLL  213 (224)
T ss_pred             chhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEE---eccee-------ecCCCHHHHHHHH
Confidence            122223455556889999999766766    679999999999999999763   23221       3345667777777


Q ss_pred             Hh
Q 014369          380 SG  381 (426)
Q Consensus       380 ~~  381 (426)
                      +.
T Consensus       214 r~  215 (224)
T KOG3111|consen  214 RN  215 (224)
T ss_pred             HH
Confidence            64

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.83  E-value=0.12  Score=49.16  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCC-CcEEEEe-CChhhHHHHHHcCCCEEEEe
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG-ARLPVLT-PNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~-~~l~~l~-~~~~di~~a~~~Gv~~V~i~  221 (426)
                      .+.++-+++++.|.+.|++.||+.+- ++       +..+.++.++ ..++ +.+.+-+ -+.++++.|+++|++.++..
T Consensus        19 ~~~~~~~~~~~a~~~gGi~~iEvt~~-~~-------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp   90 (206)
T PRK09140         19 ITPDEALAHVGALIEAGFRAIEIPLN-SP-------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP   90 (206)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence            37889999999999999999999952 22       2334444444 4453 4555443 57889999999999988874


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG  301 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G  301 (426)
                      ..  +                  .+++++++..|+.+.      .|     -.+++++    ..+.++|+|.|.+=-+ +
T Consensus        91 ~~--~------------------~~v~~~~~~~~~~~~------~G-----~~t~~E~----~~A~~~Gad~vk~Fpa-~  134 (206)
T PRK09140         91 NT--D------------------PEVIRRAVALGMVVM------PG-----VATPTEA----FAALRAGAQALKLFPA-S  134 (206)
T ss_pred             CC--C------------------HHHHHHHHHCCCcEE------cc-----cCCHHHH----HHHHHcCCCEEEECCC-C
Confidence            22  2                  266677888888765      22     2345554    3455799999986222 1


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          302 VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .+.|..    ++.+++.+| ..++..=+    |.-..|.-.-+++|++.|-
T Consensus       135 ~~G~~~----l~~l~~~~~~~ipvvaiG----GI~~~n~~~~~~aGa~~va  177 (206)
T PRK09140        135 QLGPAG----IKALRAVLPPDVPVFAVG----GVTPENLAPYLAAGAAGFG  177 (206)
T ss_pred             CCCHHH----HHHHHhhcCCCCeEEEEC----CCCHHHHHHHHHCCCeEEE
Confidence            233544    444555553 34444332    7777999999999999773

>PTZ00413 lipoate synthase; Provisional

Probab=96.80  E-value=0.083  Score=54.78  Aligned_cols=144  Identities=16%  Similarity=0.208  Sum_probs=101.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeC----ChhhHHHHHHcCC
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTP----NLKGFEAAIAAGA  215 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~----~~~di~~a~~~Gv  215 (426)
                      ..++.++-.++|++..+.|++++-+++...++ +|.  .....+.++.++. .+++.+.++++    +.+.++...++|+
T Consensus       175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~  253 (398)
T PTZ00413        175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPL  253 (398)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCC
Confidence            45799999999999999999999888754321 111  1112334445554 46788888887    4567889999999


Q ss_pred             CEEEEeccCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          216 KEVAIFASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~--~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      +.++--+-+++.+-...-  +-+.++.+    ++++.||+.   |+.+...++  +|.   +. +.+++.++++.|.+.|
T Consensus       254 dvynHNLETv~rLyp~VRt~~atYe~sL----e~Lr~AKe~f~~gi~tcSGiI--VGL---GE-T~eEvie~m~dLrelG  323 (398)
T PTZ00413        254 SVYAHNIECVERITPYVRDRRASYRQSL----KVLEHVKEFTNGAMLTKSSIM--LGL---GE-TEEEVRQTLRDLRTAG  323 (398)
T ss_pred             CEEecccccCHhHHHHHccCcCCHHHHH----HHHHHHHHHhcCCceEeeeeE--ecC---CC-CHHHHHHHHHHHHHcC
Confidence            999888777776554332  23566665    555567765   777766666  442   22 4688999999999999


Q ss_pred             CCEEEEc
Q 014369          291 CFEISLG  297 (426)
Q Consensus       291 ad~I~l~  297 (426)
                      +|.+.|.
T Consensus       324 VDivtIG  330 (398)
T PTZ00413        324 VSAVTLG  330 (398)
T ss_pred             CcEEeec
Confidence            9999884

>PRK15452 putative protease; Provisional

Probab=96.80  E-value=0.011  Score=62.46  Aligned_cols=108  Identities=17%  Similarity=0.048  Sum_probs=72.5

Q ss_pred             CcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC
Q 014369          195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       195 ~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~  274 (426)
                      .++.+.+.+.+.++.|+++|+|.|.+..+--.... ..-+.+    .+.+.+++++|+++|.++.+++-..   +  ...
T Consensus         4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~-~~~~f~----~edl~eav~~ah~~g~kvyvt~n~i---~--~e~   73 (443)
T PRK15452          4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRV-RNNEFN----HENLALGINEAHALGKKFYVVVNIA---P--HNA   73 (443)
T ss_pred             cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhh-hccCCC----HHHHHHHHHHHHHcCCEEEEEecCc---C--CHH
Confidence            45667777899999999999999998643211100 011223    3457788999999998876543321   1  122


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE  322 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~  322 (426)
                      +.+.+.+..+.+.++|+|.|.+.|. |.         +..+++..|+.
T Consensus        74 el~~~~~~l~~l~~~gvDgvIV~d~-G~---------l~~~ke~~p~l  111 (443)
T PRK15452         74 KLKTFIRDLEPVIAMKPDALIMSDP-GL---------IMMVREHFPEM  111 (443)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCH-HH---------HHHHHHhCCCC
Confidence            4456777788889999999999983 33         56666767753

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=96.78  E-value=0.23  Score=51.13  Aligned_cols=138  Identities=15%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|+..|.++- ..    |-+ .|..++++.++. .+..+.+.+-    +.+-++...+.|++.|
T Consensus        45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~il~~~~~-~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v  118 (378)
T PRK05301         45 ELSTEEWIRVLREARALGALQLHFSG-GE----PLLRKDLEELVAHARE-LGLYTNLITSGVGLTEARLAALKDAGLDHI  118 (378)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEC-Cc----cCCchhHHHHHHHHHH-cCCcEEEECCCccCCHHHHHHHHHcCCCEE
Confidence            57889999999999999988777642 12    222 234455555543 2444443332    2456777788999999


Q ss_pred             EEeccCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          219 AIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       219 ~i~~~~S--d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .|.+...  +.|.+. -|.  ...++++.+.++.++++|+.|.+.+.  +     ++...+.+.++++.+.+.|++.+.+
T Consensus       119 ~iSldg~~~e~~d~i-rg~--~g~f~~~~~~i~~l~~~g~~v~i~~v--v-----~~~N~~~i~~~~~~~~~lgv~~i~~  188 (378)
T PRK05301        119 QLSFQDSDPELNDRL-AGT--KGAFAKKLAVARLVKAHGYPLTLNAV--I-----HRHNIDQIPRIIELAVELGADRLEL  188 (378)
T ss_pred             EEEecCCCHHHHHHH-cCC--CchHHHHHHHHHHHHHCCCceEEEEE--e-----ecCCHHHHHHHHHHHHHcCCCEEEE
Confidence            9887653  333321 121  12466667788889999998875443  2     3456788999999999999998877


Q ss_pred             c
Q 014369          297 G  297 (426)
Q Consensus       297 ~  297 (426)
                      .
T Consensus       189 ~  189 (378)
T PRK05301        189 A  189 (378)
T ss_pred             e
Confidence            4

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=96.78  E-value=0.1  Score=52.87  Aligned_cols=138  Identities=15%  Similarity=0.071  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|++.|-++. -    .|-+ .|..++++.+++.++.....++-|    .+-++...++|++.|
T Consensus        44 ~ls~eei~~li~~~~~~Gv~~I~~tG-G----EPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v  118 (329)
T PRK13361         44 VLSLEELAWLAQAFTELGVRKIRLTG-G----EPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRL  118 (329)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEC-c----CCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeE
Confidence            58999999999999999999998863 1    2222 245566666665554432333333    234566778999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      .|.+-..+......++.  ...++++.+.++.+++.|+ .+.++....   +   ....+++.++++.+.+.|++..
T Consensus       119 ~ISlDs~~~e~~~~i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v~~---~---g~N~~ei~~~~~~~~~~gi~~~  187 (329)
T PRK13361        119 NISLDTLRPELFAALTR--NGRLERVIAGIDAAKAAGFERIKLNAVIL---R---GQNDDEVLDLVEFCRERGLDIA  187 (329)
T ss_pred             EEEeccCCHHHhhhhcC--CCCHHHHHHHHHHHHHcCCCceEEEEEEE---C---CCCHHHHHHHHHHHHhcCCeEE
Confidence            99875433211122222  2457778888899999998 676544321   1   2456888999999999998753

>PRK12928 lipoyl synthase; Provisional

Probab=96.75  E-value=0.049  Score=54.56  Aligned_cols=160  Identities=19%  Similarity=0.254  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc--cCHHHHHHHhHhc-CCCcEEEEeCC-----hhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPN-----LKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~~-----~~di~~a~~~Gv  215 (426)
                      .++.++.+++++.+.+.|++.|-++.....+ .|..  ....++++.++.. +.+++-++.+.     .+.++...++|.
T Consensus        86 ~~~~eei~~~a~~~~~~G~keivitg~~~dD-l~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~  164 (290)
T PRK12928         86 PLDPDEPERVAEAVAALGLRYVVLTSVARDD-LPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKP  164 (290)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCc-ccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCc
Confidence            5899999999999999999998886543321 1111  1235666777654 67888888874     345778888998


Q ss_pred             CEEEEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          216 KEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      +.+...+..++...+. +-+.+.+    +..++++.|++.|  +.+...++..+     +. +.+++.+..+.+.+.+++
T Consensus       165 ~i~~hnlEt~~~vl~~m~r~~t~e----~~le~l~~ak~~gp~i~~~s~iIvG~-----GE-T~ed~~etl~~Lrel~~d  234 (290)
T PRK12928        165 DVFNHNLETVPRLQKAVRRGADYQ----RSLDLLARAKELAPDIPTKSGLMLGL-----GE-TEDEVIETLRDLRAVGCD  234 (290)
T ss_pred             hhhcccCcCcHHHHHHhCCCCCHH----HHHHHHHHHHHhCCCceecccEEEeC-----CC-CHHHHHHHHHHHHhcCCC
Confidence            8777666666543332 2233444    4557778899999  88877777443     22 468888999999999999


Q ss_pred             EEEEcC----------CCCCCCHHHHHHHHHH
Q 014369          293 EISLGD----------TIGVGTPGTVVPMLEA  314 (426)
Q Consensus       293 ~I~l~D----------T~G~~~P~~v~~li~~  314 (426)
                      .+.+.=          -..+.+|+++..+-+.
T Consensus       235 ~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~  266 (290)
T PRK12928        235 RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQI  266 (290)
T ss_pred             EEEEEcCCCCCccCCceeeccCHHHHHHHHHH
Confidence            888721          2356677777665443

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=96.70  E-value=0.54  Score=44.40  Aligned_cols=178  Identities=21%  Similarity=0.201  Sum_probs=112.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C----C----hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P----N----LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----~----~~di~~a~~~  213 (426)
                      ..+.++..++++...+.|++.+-+..    .++      +.+.+.++. .++++.+.+  |    .    ...++.|++.
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p----~~v------~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~   81 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNP----CFV------PLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIAD   81 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcH----HHH------HHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence            44788888899999998998887642    111      111222221 234444333  2    1    1358899999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |++.|-+.+..+...     .-..++.++.+.++++.|+  |+.+.+-+.       .+..+++.+...++.+.++|+|.
T Consensus        82 GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e-------~~~l~~~~i~~a~ria~e~GaD~  147 (203)
T cd00959          82 GADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILE-------TGLLTDEEIIKACEIAIEAGADF  147 (203)
T ss_pred             CCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEe-------cCCCCHHHHHHHHHHHHHhCCCE
Confidence            999999987654321     1234567888888888876  776664222       13346889999999999999998


Q ss_pred             EEEc--CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          294 ISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       294 I~l~--DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      |-..  =+.+..+|+++..+-+.++..+|. ++.==.+ |    ...++.=+++|++++-+
T Consensus       148 IKTsTG~~~~~at~~~v~~~~~~~~~~v~i-k~aGGik-t----~~~~l~~~~~g~~riG~  202 (203)
T cd00959         148 IKTSTGFGPGGATVEDVKLMKEAVGGRVGV-KAAGGIR-T----LEDALAMIEAGATRIGT  202 (203)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHhCCCceE-EEeCCCC-C----HHHHHHHHHhChhhccC
Confidence            8876  223446788888777776633332 1221112 3    35566667779887744

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.68  E-value=0.057  Score=51.77  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH---HhHhcC-CCcEEEEe-C---ChhhHHHHHHc
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRDLE-GARLPVLT-P---NLKGFEAAIAA  213 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~---~i~~~~-~~~l~~l~-~---~~~di~~a~~~  213 (426)
                      +...+.++-.++++...+.|++.+-+...    +++.. +. .+..   .+.++. .+.+.... +   -...++.|++.
T Consensus        15 ~p~~~~~d~~~~~~~~~~~g~~av~v~~~----~~~~~-~~-~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~   88 (235)
T cd00958          15 GPNPGLEDPEETVKLAAEGGADAVALTKG----IARAY-GR-EYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL   88 (235)
T ss_pred             CCCccccCHHHHHHHHHhcCCCEEEeChH----HHHhc-cc-ccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence            34557777788999999999998887521    11110 00 0000   000000 00000000 0   12458899999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |++.|.+-+...+.        +.++.++.+.++++.|++.|+++.+.... .|.......+++.+...++.+.++|+|.
T Consensus        89 Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~~-~g~~~~~~~~~~~i~~~~~~a~~~GaD~  159 (235)
T cd00958          89 GADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMYP-RGPAVKNEKDPDLIAYAARIGAELGADI  159 (235)
T ss_pred             CCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEec-cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence            99988555433221        23577888999999999999998754321 1111111234567777788899999999


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---CCcCcHHHHHHHHHHcCCCEEee
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H---Nd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      |.+.=|.   .++.    ++.+.+..|. ++-+=+.   .|..-.+.|+-.++++||+.|-.
T Consensus       160 Ik~~~~~---~~~~----~~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v  213 (235)
T cd00958         160 VKTKYTG---DAES----FKEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV  213 (235)
T ss_pred             EEecCCC---CHHH----HHHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            9995332   2334    4444444443 3333232   45555778999999999997743

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK09234 fbiC FO synthase; Reviewed

Probab=96.63  E-value=0.15  Score=58.15  Aligned_cols=227  Identities=13%  Similarity=0.095  Sum_probs=138.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-------------ChhhH
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-------------NLKGF  207 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------~~~di  207 (426)
                      ...++.++.++.++...+.|+..|-+-....|+. + .....++++.++ ..|++.+.+++|             ..+-+
T Consensus       554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~-~-~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l  631 (843)
T PRK09234        554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL-P-GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWL  631 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-C-HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHH
Confidence            4568999999999999999999988864444431 1 111223344444 346788877754             12346


Q ss_pred             HHHHHcCCCEEEEeccCChHHH---hhhc---CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFS---KSNI---NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~---~~~~---~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      ++..++|++.+.-  ..-+++.   +..+   .++.+    .-.++++.|+++|+++...++  ||-.    -+++..++
T Consensus       632 ~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~~----~wle~i~~Ah~lGi~~~stmm--~G~~----Et~edrv~  699 (843)
T PRK09234        632 TALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPTA----EWIEVVTTAHEVGLRSSSTMM--YGHV----DTPRHWVA  699 (843)
T ss_pred             HHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCHH----HHHHHHHHHHHcCCCcccceE--EcCC----CCHHHHHH
Confidence            7888999997752  1111111   1111   12322    235788899999999987777  5532    35777777


Q ss_pred             HHHHHHhCCCC-----EEE-----EcCC--------CCCCCHHHHHHHHHHHHHhcCC--ceEEEEeCCCcCcHHHHHHH
Q 014369          282 VAKELHDMGCF-----EIS-----LGDT--------IGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       282 ~~~~l~~~Gad-----~I~-----l~DT--------~G~~~P~~v~~li~~l~~~~p~--~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+..+.++..+     .+.     -.+|        ....++.+..++++..|=.+|+  .+|..-. .++|.  .-+..
T Consensus       700 hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~lg~--~~~q~  776 (843)
T PRK09234        700 HLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKLGV--EGTRA  776 (843)
T ss_pred             HHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhcCH--HHHHH
Confidence            77777777643     111     2233        1236788888888888777763  2333332 34443  34678


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHhCCCC
Q 014369          342 SLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  385 (426)
Q Consensus       342 Al~aGa~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L~~lG~~  385 (426)
                      ++.+||+-+.+|+..===-++|....| -.+.++++.+.+..|..
T Consensus       777 ~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~  821 (843)
T PRK09234        777 MLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP  821 (843)
T ss_pred             HHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            999999999888743110111111233 35688888888877764

>PRK06267 hypothetical protein; Provisional

Probab=96.61  E-value=0.32  Score=49.92  Aligned_cols=214  Identities=10%  Similarity=0.024  Sum_probs=119.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEec-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFA-  222 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~-  222 (426)
                      ..+.++.++-++.+.+.|++.+=+......    ...+.+++.+.++.+.+.. ..+.....+.+.+...+++.+.... 
T Consensus        62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~-~~~s~G~~d~~~~~~~~l~Gv~g~~E  136 (350)
T PRK06267         62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCK-QYLNVGIIDFLNINLNEIEGVVGAVE  136 (350)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCc-eEeecccCCHHHHhhccccCceeeee
Confidence            568999999999999999984422211111    0112344555555444432 1222222333333333333222222 


Q ss_pred             cCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE------
Q 014369          223 SASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS------  295 (426)
Q Consensus       223 ~~Sd-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~------  295 (426)
                      ..++ .+.+..-+.+.++    ..+.++.+++.|+++.+.++  +|. ..   +.+++.+.++.+.+++++.+.      
T Consensus       137 T~~~~~~~~i~~~~s~ed----~~~~l~~ak~aGi~v~~g~I--iGl-gE---t~ed~~~~l~~l~~l~~d~v~~~~L~P  206 (350)
T PRK06267        137 TVNPKLHREICPGKPLDK----IKEMLLKAKDLGLKTGITII--LGL-GE---TEDDIEKLLNLIEELDLDRITFYSLNP  206 (350)
T ss_pred             cCCHHHHHhhCCCCCHHH----HHHHHHHHHHcCCeeeeeEE--EeC-CC---CHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence            2223 3333333445444    44667789999999876655  442 22   367888889999999988654      


Q ss_pred             EcCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCCCCCCCCCCCc
Q 014369          296 LGDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       296 l~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGecP~a~graGN  369 (426)
                      .++|    .-..+|.++.+++..+|-.+|...|-.=.--+.+..++   .++.+||+.|  --.+++++-      ..|+
T Consensus       207 ~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~  277 (350)
T PRK06267        207 QKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGK  277 (350)
T ss_pred             CCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCC
Confidence            3454    23467789999999999888965442111101111111   2566999987  223444555      6777


Q ss_pred             ccHHHHHHHHHh
Q 014369          370 VATEDVVYMLSG  381 (426)
Q Consensus       370 a~lEevv~~L~~  381 (426)
                      ..-+++-..=+.
T Consensus       278 ~~~~~~~~~~~~  289 (350)
T PRK06267        278 RVENEIRWTGRE  289 (350)
T ss_pred             CHHHHHHHhhhh
Confidence            777776655343

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]

Probab=96.61  E-value=0.17  Score=52.40  Aligned_cols=230  Identities=13%  Similarity=0.081  Sum_probs=139.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEeC------------Ch-hh
Q 014369          141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP------------NL-KG  206 (426)
Q Consensus       141 ~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~------------~~-~d  206 (426)
                      .+..++.++..+.++.+.+.|+..|=+-+...|...+.  -..+.++.+++ .|++.+-++.+            .. +.
T Consensus        86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~  163 (370)
T COG1060          86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV  163 (370)
T ss_pred             cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence            45679999999999999999999988876666543211  13445555553 56666666553            12 34


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhh------hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKS------NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~------~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +++..++|++.+-.+-  .+++.+.      ..+++.++=    .++.+.|.++|++..+.+++..   ..++.+.-..+
T Consensus       164 l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~w----le~~~~Ah~lGI~~tatml~Gh---~E~~ed~~~hl  234 (370)
T COG1060         164 LKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEW----LEIHERAHRLGIPTTATMLLGH---VETREDRIDHL  234 (370)
T ss_pred             HHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeEEEe---cCCHHHHHHHH
Confidence            7888899988654432  1222211      123344433    3677899999999887666432   11222222222


Q ss_pred             HHHHHHH-hCC-CCEEEEc-----CC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          281 YVAKELH-DMG-CFEISLG-----DT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       281 ~~~~~l~-~~G-ad~I~l~-----DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      .-++.+. ++| ...|.+.     .+      ..-..+.+....|+..|-.++. .|...-=-.+-+++.-+.+|+.+||
T Consensus       235 ~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w~~~g~~~~~~~l~~Ga  313 (370)
T COG1060         235 EHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASWLRDGVILAQAALLSGA  313 (370)
T ss_pred             HHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcccccchHHHHHHHHhCc
Confidence            2333333 344 3343331     22      1224556666666666655552 2444444566777788899999999


Q ss_pred             CEEeecccCCCCCCCCCCCCC-----cccHHHHHHHHHhCCCCC
Q 014369          348 STVDCSVAGLGGCPYAKGASG-----NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       348 ~~VD~Sv~GlGecP~a~graG-----Na~lEevv~~L~~lG~~~  386 (426)
                      +-+.+|+..  |+- .+ .+|     +...|+++.+++..|..+
T Consensus       314 nD~ggt~~~--E~v-~~-~a~~~~~~~~~~eel~~~i~~aG~~p  353 (370)
T COG1060         314 NDLGGTGYE--EKV-NP-AAGAFSGDWRSVEELAALIKEAGRIP  353 (370)
T ss_pred             ccCcCCCcc--ccc-cc-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence            988888776  521 11 244     789999999999988754

>PLN02858 fructose-bisphosphate aldolase

Probab=96.61  E-value=0.41  Score=57.56  Aligned_cols=252  Identities=13%  Similarity=0.090  Sum_probs=162.0

Q ss_pred             CCCCchhhhHHHHhhc-CCCCccEEEeC--CccccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccccc
Q 014369          106 NCNDKDIRDITNKFLK-GIPRFVKIVEV--GPRDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA  180 (426)
Q Consensus       106 ~~~~~~~~~~~~~~~~-~~p~~V~I~D~--TLRDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~  180 (426)
                      |-|+.+..++.+-+.. .-|.++...|.  --+++.+..+.  .++.+....++++-.+.+.+.|=-.++..-++.+   
T Consensus      1078 ~G~~G~~~tL~~~~~~l~~~~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~--- 1154 (1378)
T PLN02858       1078 PGNVGDSTALAEVVKSWARPARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG--- 1154 (1378)
T ss_pred             CCcCCChHHHHHHHHHhcCcCCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC---
Confidence            3466665555443321 33444432222  13445554443  5789999999999999999988766554322222   


Q ss_pred             CHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          181 DARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       181 D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                       .+ +...++   +...+.+....   .+.+.+..|+++|.+.|.+=.|          ..+.+|+++.-++++++|+..
T Consensus      1155 -~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~ 1222 (1378)
T PLN02858       1155 -IP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGS----------HLSFTENISYTKSISSLAHSK 1222 (1378)
T ss_pred             -HH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHc
Confidence             12 332232   11234444433   3578999999999998888544          235789999999999999999


Q ss_pred             CCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC---CHHHHHHHHHHHHHhcC-
Q 014369          255 SIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVP-  320 (426)
Q Consensus       255 G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~---~P~~v~~li~~l~~~~p-  320 (426)
                      |+.|++.+-.+-|.++.        ..++|+...++++   +.|+|.+.++  -.=|.-   .|.==.++++.+++.++ 
T Consensus      1223 gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~ 1299 (1378)
T PLN02858       1223 GLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSK 1299 (1378)
T ss_pred             CCEEEEEecccCCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcC
Confidence            99999888776555543        1467777666665   5788865543  333332   24344567888888873 


Q ss_pred             -CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHH
Q 014369          321 -VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML  395 (426)
Q Consensus       321 -~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~  395 (426)
                       ++||.+|+  .-|..-.....|++.|+.-|                  |..||--..+.+.+.-...+|+.++..
T Consensus      1300 ~~vpLVlHG--gSG~~~~~~~~ai~~Gi~Ki------------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858       1300 KGVLLVLHG--ASGLPESLIKECIENGVRKF------------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred             CCCcEEEeC--CCCCCHHHHHHHHHcCCeEE------------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence             45777776  45666889999999999866                  667777777666543333467665554

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=96.59  E-value=0.35  Score=46.92  Aligned_cols=187  Identities=12%  Similarity=0.100  Sum_probs=101.3

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C---------------C---------hh
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P---------------N---------LK  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------~---------~~  205 (426)
                      .+.++.+.++|++.||++.+.       ..+.+++.+.++. .+++++... +               .         .+
T Consensus        18 ~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (258)
T PRK09997         18 LARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAA   89 (258)
T ss_pred             HHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHH
Confidence            446788899999999997532       1356677766653 344444211 1               0         11


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -++.|.+.|++.|.++....+      -+.+    .+...+.+.++.++|++.|+.+...-...+..+...-.+++...+
T Consensus        90 ~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~  163 (258)
T PRK09997         90 AIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALK  163 (258)
T ss_pred             HHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHH
Confidence            245566789998887643210      0112    234456667888889999987653211011111111234555555


Q ss_pred             HHHHHHhCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          282 VAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       282 ~~~~l~~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +++   +.+.+.| -+-|+.=.... .++.+.++.+    ++--..+|.+|..+-                       + 
T Consensus       164 ll~---~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~----~~ri~~vHikD~~~~-----------------------~-  212 (258)
T PRK09997        164 LID---DVGCCNLKIQYDIYHMQRMEGELTNTMTQW----ADKIGHLQIADNPHR-----------------------G-  212 (258)
T ss_pred             HHH---HhCCCCEEEEeEHHHhhhcCCcHHHHHHHh----hCcccEEEeCCCCCC-----------------------C-
Confidence            544   4444433 34565322211 1233333333    222367888885321                       0 


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                         .+| .|..+...++.+|+..|++.
T Consensus       213 ---~~G-~G~id~~~i~~aL~~~Gy~G  235 (258)
T PRK09997        213 ---EPG-TGEINYDYLFKVIENSDYNG  235 (258)
T ss_pred             ---CCC-CCcCCHHHHHHHHHHhCCCe
Confidence               133 68999999999999988763

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=96.58  E-value=0.2  Score=50.18  Aligned_cols=206  Identities=16%  Similarity=0.080  Sum_probs=121.5

Q ss_pred             CCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEeC-----Ch----hhHHHHHHcCCCEEEEeccCCh
Q 014369          161 GLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP-----NL----KGFEAAIAAGAKEVAIFASASE  226 (426)
Q Consensus       161 Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~-----~~----~di~~a~~~Gv~~V~i~~~~Sd  226 (426)
                      |++.|=+++..  ..-++|.  +-+..+++..++.+- .+.+.+++-     +.    +-++...++|+.-|+|-..+.+
T Consensus        38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~p  117 (285)
T TIGR02320        38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGL  117 (285)
T ss_pred             CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCC
Confidence            99988886532  2233453  245677777777543 233333331     22    3467778899999999765433


Q ss_pred             HH---Hhhh---cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369          227 AF---SKSN---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       227 ~~---~~~~---~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                      .+   ...+   .-.+.++..++++.+++....-.+.|.+.- .++    ......+...+-+++..++|||.|.+.  .
T Consensus       118 k~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART-Da~----~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~  190 (285)
T TIGR02320       118 KKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV-ESL----ILGKGMEDALKRAEAYAEAGADGIMIH--S  190 (285)
T ss_pred             ccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec-ccc----cccCCHHHHHHHHHHHHHcCCCEEEec--C
Confidence            21   1111   124678888777655444222222222110 000    011246778888999999999999997  3


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      +..+++++.++++.+...+|..++-+.. ..++.-.  .-.--++|+++|-....-+        |+-..++++++..+.
T Consensus       191 ~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~~--~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~~~~~~~  259 (285)
T TIGR02320       191 RKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTTP--TDEFRDAGISVVIYANHLL--------RAAYAAMQQVAERIL  259 (285)
T ss_pred             CCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCCC--HHHHHHcCCCEEEEhHHHH--------HHHHHHHHHHHHHHH
Confidence            4678999999999998877766674433 2233322  3344477999885443332        455666777777666


Q ss_pred             hCCC
Q 014369          381 GLGV  384 (426)
Q Consensus       381 ~lG~  384 (426)
                      ..|.
T Consensus       260 ~~g~  263 (285)
T TIGR02320       260 EHGR  263 (285)
T ss_pred             HcCC
Confidence            5443

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.21  Score=49.80  Aligned_cols=201  Identities=17%  Similarity=0.211  Sum_probs=132.1

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEe---CChhh
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT---PNLKG  206 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~~~~d  206 (426)
                      +++.+..+.  ....+....|.++-.+.+-++|=-.+...-++.   .-...+...++.+   -++.+....   ...++
T Consensus        14 ke~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~---gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~   90 (286)
T COG0191          14 KENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYA---GGADSLAHMVKALAEKYGVPVALHLDHGASFED   90 (286)
T ss_pred             HHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHh---chHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence            444454443  468899999999999999998877765432221   1022333333321   124444433   35789


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHH---H
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVA---Y  281 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~---~  281 (426)
                      +..++++|...|.+=-|.          .+.+|+++..++++++|+..|+.|++.|-+.-|-+|.  ...+++.+.   +
T Consensus        91 ~~~ai~~GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~e  160 (286)
T COG0191          91 CKQAIRAGFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEE  160 (286)
T ss_pred             HHHHHhcCCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHH
Confidence            999999999988874442          3478999999999999999999999988887666662  223333222   2


Q ss_pred             HHHHHHhCCCCEE--EEcCCCCCCCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          282 VAKELHDMGCFEI--SLGDTIGVGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       282 ~~~~l~~~Gad~I--~l~DT~G~~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      ..+.....|+|.+  .|.-.=|.-.|...   .++++.+++..+ +||.+|+=.  |........|+..|+.-|+
T Consensus       161 a~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvN  232 (286)
T COG0191         161 ALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVN  232 (286)
T ss_pred             HHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEe
Confidence            2333345678844  45555555443221   345667777666 468877755  9999999999999998663

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=96.57  E-value=0.48  Score=48.50  Aligned_cols=224  Identities=14%  Similarity=0.095  Sum_probs=148.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---CCcEEE-Ee-CChhhHHHHHHcCCC
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPV-LT-PNLKGFEAAIAAGAK  216 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---~~~l~~-l~-~~~~di~~a~~~Gv~  216 (426)
                      .+.++.++.++-|+...+.|.....++.-...+.    .+.+++.+.++.+.   ++++.+ +. -+.+.++...++|++
T Consensus        81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~----~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd  156 (335)
T COG0502          81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPG----RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVD  156 (335)
T ss_pred             hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCC----ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChh
Confidence            3467899999999999999977777764322111    35677777777554   333322 11 246778889999999


Q ss_pred             EEEEeccCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEE
Q 014369          217 EVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEI  294 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~-~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I  294 (426)
                      .+.--+-+|+-|-. ..-..|.++=+    +.++.+|+.|++|..-..  +|-.    -+.++-.+.+..|.+.. +++|
T Consensus       157 ~ynhNLeTs~~~y~~I~tt~t~edR~----~tl~~vk~~Gi~vcsGgI--~GlG----Es~eDri~~l~~L~~l~~pdsV  226 (335)
T COG0502         157 RYNHNLETSPEFYENIITTRTYEDRL----NTLENVREAGIEVCSGGI--VGLG----ETVEDRAELLLELANLPTPDSV  226 (335)
T ss_pred             heecccccCHHHHcccCCCCCHHHHH----HHHHHHHHcCCccccceE--ecCC----CCHHHHHHHHHHHHhCCCCCee
Confidence            88776655654433 23355666554    667789999999875444  3332    24566667777788887 7776


Q ss_pred             EE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          295 SL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       295 ~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                      -|      ++|    .--..|.+..+.|+..|-.+|...|-+- =..-.+.-...-.++.+||+-|=++. .+.      
T Consensus       227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~l------  298 (335)
T COG0502         227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYL------  298 (335)
T ss_pred             eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEe------
Confidence            54      222    3356788899999999988996444332 23334444556778899999876665 222      


Q ss_pred             CCCCcccHHHHHHHHHhCCCCCCc
Q 014369          365 GASGNVATEDVVYMLSGLGVETNV  388 (426)
Q Consensus       365 graGNa~lEevv~~L~~lG~~~~i  388 (426)
                       -+.|...|+-...++.+|.....
T Consensus       299 -tt~~~~~e~D~~~l~~lgl~~e~  321 (335)
T COG0502         299 -TTPGPDEDKDLELLKDLGLEPEL  321 (335)
T ss_pred             -ecCCCCchhHHHHHHHcCCCccc
Confidence             23448889999999998877543

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=96.56  E-value=0.19  Score=51.17  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~  219 (426)
                      .++.++..++++.+.+.|+..|.++- ..|-.-   .|..++++.++. .+..+...+-    +.+-++...+.|++.|.
T Consensus        36 ~l~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~ii~~~~~-~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~  110 (358)
T TIGR02109        36 ELTTEEWTDVLTQAAELGVLQLHFSG-GEPLAR---PDLVELVAHARR-LGLYTNLITSGVGLTEARLDALADAGLDHVQ  110 (358)
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEEeC-cccccc---ccHHHHHHHHHH-cCCeEEEEeCCccCCHHHHHHHHhCCCCEEE
Confidence            57899999999999999998887753 222111   234556665553 2444443332    23557777889999999


Q ss_pred             EeccCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          220 IFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       220 i~~~~S--d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      |.+...  +.|.+  ++ .....++++.+.++++++.|+.+.+++.  +     ++...+++.++++.+.+.|++.+.+
T Consensus       111 iSldg~~~e~~d~--~r-g~~g~f~~v~~~i~~l~~~g~~v~v~~v--v-----~~~N~~~l~~~~~~~~~lg~~~i~~  179 (358)
T TIGR02109       111 LSFQGVDEALADR--IA-GYKNAFEQKLAMARAVKAAGLPLTLNFV--I-----HRHNIDQIPEIIELAIELGADRVEL  179 (358)
T ss_pred             EeCcCCCHHHHHH--hc-CCccHHHHHHHHHHHHHhCCCceEEEEE--e-----ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence            887543  23433  22 1234677788888999999998775443  2     3456788888999999999998876

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.53  E-value=0.38  Score=47.34  Aligned_cols=182  Identities=11%  Similarity=0.003  Sum_probs=116.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhH---hcCCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~~~~di~~a~~~Gv~~V  218 (426)
                      =+.++..++|+.+.++|+..+=-|+|-   +|....-+ . .+-++.++   +-.++.+..=+....+++.+.+ .+|.+
T Consensus        26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdil  102 (250)
T PRK13397         26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-G-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVI  102 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-C-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEE
Confidence            377888999999999999999999763   23221111 1 12233332   2234554444457788898888 69988


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      .|....          +.-       .++++++-+.|..|-  ++.      ....+++++...++.+.+.|...|.|+-
T Consensus       103 qIgs~~----------~~n-------~~LL~~va~tgkPVi--lk~------G~~~t~~e~~~A~e~i~~~Gn~~i~L~e  157 (250)
T PRK13397        103 QVGARN----------MQN-------FEFLKTLSHIDKPIL--FKR------GLMATIEEYLGALSYLQDTGKSNIILCE  157 (250)
T ss_pred             EECccc----------ccC-------HHHHHHHHccCCeEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence            886331          111       255566667788776  332      1146789999999999999998888886


Q ss_pred             --CCCCCCHHH-HH--HHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          299 --TIGVGTPGT-VV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       299 --T~G~~~P~~-v~--~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                        +.++-+|.+ +.  .-+..+++.++ .+|.+   |.=...-+-.+-+++|+.+||+  .|+.-..
T Consensus       158 Rg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~  223 (250)
T PRK13397        158 RGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPD  223 (250)
T ss_pred             cccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence              444444433 22  33566666553 24333   5433333445889999999999  8876554

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]

Probab=96.52  E-value=0.4  Score=48.77  Aligned_cols=144  Identities=19%  Similarity=0.135  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++...+.||+-|=++-.     .|-+ .|..++.+.+++. +..-.+++.|    .+..+...++|+++|
T Consensus        42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGG-----EPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~rV  115 (322)
T COG2896          42 LLSLEEIRRLVRAFAELGVEKVRLTGG-----EPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAGLDRV  115 (322)
T ss_pred             cCCHHHHHHHHHHHHHcCcceEEEeCC-----CchhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHHHHcCCcEE
Confidence            579999999999999999999999742     3433 4666666666654 4444566655    245667788999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EIS  295 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~  295 (426)
                      +|.+-.=|......+.  ....++++.+-+++|.+.|+. |-++.-..     - ..+.+++.++++.+.+.|+.  -|-
T Consensus       116 NVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-----k-gvNd~ei~~l~e~~~~~~~~lrfIE  187 (322)
T COG2896         116 NVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-----K-GVNDDEIEDLLEFAKERGAQLRFIE  187 (322)
T ss_pred             EeecccCCHHHHHHHh--CCCcHHHHHHHHHHHHHcCCCceEEEEEEe-----c-CCCHHHHHHHHHHHhhcCCceEEEE
Confidence            9997554433333332  233478888999999999995 77554322     1 25678899999999999864  677


Q ss_pred             EcCCCC
Q 014369          296 LGDTIG  301 (426)
Q Consensus       296 l~DT~G  301 (426)
                      +.|+-.
T Consensus       188 ~m~~g~  193 (322)
T COG2896         188 LMPLGE  193 (322)
T ss_pred             EeecCc
Confidence            777654

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.031  Score=57.46  Aligned_cols=105  Identities=22%  Similarity=0.189  Sum_probs=75.5

Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      .+.++++.+++.|+|.|.+..+.--....+ .+.+.++    +.+.|++|+++|.++.+.+....     .....+.+.+
T Consensus        14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a-~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~   83 (347)
T COG0826          14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRA-LNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETLER   83 (347)
T ss_pred             CCHHHHHHHHHcCCCEEEeCCccccccccc-ccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHH
Confidence            478999999999999988875511111222 3455555    67899999999998876555421     1233456788


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  326 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~  326 (426)
                      ..+.+.++|+|.|.++|-          -+|..+++..|+.+|.+
T Consensus        84 ~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~  118 (347)
T COG0826          84 YLDRLVELGVDAVIVADP----------GLIMLARERGPDLPIHV  118 (347)
T ss_pred             HHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEE
Confidence            999999999999999995          46778888888755444

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=96.51  E-value=0.36  Score=46.50  Aligned_cols=189  Identities=18%  Similarity=0.131  Sum_probs=101.1

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C---------------C-----h----h
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P---------------N-----L----K  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------~-----~----~  205 (426)
                      .+.++.+.++|++.||+..+..       .+..++.+.++. .++++.++. +               .     .    +
T Consensus        17 ~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T TIGR03234        17 LERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVAL   88 (254)
T ss_pred             HHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHH
Confidence            3456666788999999975321       234455544442 455555442 1               0     0    1


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -++.|.+.|++.|++.....+      .+.+    .+...+.+.+++++|++.|+.+...-..-+.+|...-.+++...+
T Consensus        89 ~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~  162 (254)
T TIGR03234        89 AIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALA  162 (254)
T ss_pred             HHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHH
Confidence            345667789999887644211      0111    234556678888999999987652111001111111234555555


Q ss_pred             HHHHHHhCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          282 VAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       282 ~~~~l~~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +++   +.+.+.+ ..-|+.=...- +...++++.+.   + --..+|..|+.|.                       . 
T Consensus       163 li~---~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~---~-~i~~vHi~D~~~~-----------------------~-  211 (254)
T TIGR03234       163 VID---DVGRENLKLQYDLYHMQRMGGDLARTLAAYA---A-HIGHVQIADNPGR-----------------------H-  211 (254)
T ss_pred             HHH---HhCCCCEeEeeehhhhhhhCCCHHHHHHHhh---c-cEeEEEeCCCCCC-----------------------C-
Confidence            554   4443333 44565432211 12333333332   2 2367888775320                       0 


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGVETNV  388 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~~~~i  388 (426)
                         .+| .|..+..+++..|+..|++.-+
T Consensus       212 ---~~G-~G~id~~~il~~L~~~gy~g~~  236 (254)
T TIGR03234       212 ---EPG-TGEINYRFLFAVLDRLGYDGWV  236 (254)
T ss_pred             ---CCC-CCccCHHHHHHHHHHCCCCceE
Confidence               123 6899999999999998887433

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=96.50  E-value=0.3  Score=50.58  Aligned_cols=164  Identities=16%  Similarity=0.118  Sum_probs=100.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|+..|-++.     +.|-+ .|..++++.++..++.....++-|    .+.++...++|++.|
T Consensus        89 ~ls~eei~~~i~~~~~~Gv~~I~~tG-----GEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~V  163 (373)
T PLN02951         89 LLSQDEIVRLAGLFVAAGVDKIRLTG-----GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL  163 (373)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEC-----CCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeE
Confidence            47999999999999999999887753     12332 244566666666666643344333    245677788999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE--IS  295 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~--I~  295 (426)
                      .|.+-..+.-....+..  ...++++.+.++.|++.|+ .|.+++...      ...+.+++.++++.+.+.|+..  |.
T Consensus       164 nISLDsl~~e~~~~itr--~~~~~~vl~~I~~a~~~G~~~vkin~vv~------~g~N~~Ei~~li~~a~~~gi~vr~ie  235 (373)
T PLN02951        164 NISLDTLVPAKFEFLTR--RKGHDRVLESIDTAIELGYNPVKVNCVVM------RGFNDDEICDFVELTRDKPINVRFIE  235 (373)
T ss_pred             EEeeccCCHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCcEEEEEEec------CCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence            99875432211112211  1124677788888999997 465444321      1245678889999888888653  44


Q ss_pred             EcCCCCCCC----HHHHHHHHHHHHHhcC
Q 014369          296 LGDTIGVGT----PGTVVPMLEAVMAVVP  320 (426)
Q Consensus       296 l~DT~G~~~----P~~v~~li~~l~~~~p  320 (426)
                      +--..|...    .....++.+.+.+.+|
T Consensus       236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~  264 (373)
T PLN02951        236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFP  264 (373)
T ss_pred             cccCCCCccccccCCCHHHHHHHHHHhcC
Confidence            444333211    1125666777766655

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=96.48  E-value=0.24  Score=47.73  Aligned_cols=162  Identities=19%  Similarity=0.202  Sum_probs=102.7

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCCh-hhHHHHHHcCCCEEEEec
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPNL-KGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~  222 (426)
                      .+-++.|.++|++.+=+    |.|+     |+++=..++++.+++. ++..+-+  ++.+. .-++..+++|++.|.+.+
T Consensus        15 ~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~   89 (220)
T PRK08883         15 GEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHV   89 (220)
T ss_pred             HHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence            34567788889997655    5554     4443345667777764 4544443  45554 567888999999888754


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD  298 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D  298 (426)
                      -                +.+...++++++|++|+++...+.     |.   ++.+.+.++.+.     +|.|-+    +.
T Consensus        90 E----------------a~~~~~~~l~~ik~~g~k~Glaln-----P~---Tp~~~i~~~l~~-----~D~vlvMtV~PG  140 (220)
T PRK08883         90 E----------------ASEHVDRTLQLIKEHGCQAGVVLN-----PA---TPLHHLEYIMDK-----VDLILLMSVNPG  140 (220)
T ss_pred             c----------------CcccHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHHHHh-----CCeEEEEEecCC
Confidence            2                233456788899999999875443     32   466776666542     232222    33


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          299 TIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.|...=....+.++.+++..+    ..+|.+    |-|.-..|+-..+++||+.+
T Consensus       141 fgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v  192 (220)
T PRK08883        141 FGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF  192 (220)
T ss_pred             CCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            4443332333345666666543    234555    88999999999999999977

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=96.46  E-value=0.74  Score=47.35  Aligned_cols=196  Identities=14%  Similarity=0.084  Sum_probs=119.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc--cC---------HHHHHHHhHh---cCCCcEEEEe---CC---
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--AD---------ARDVMEAVRD---LEGARLPVLT---PN---  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D---------~~~v~~~i~~---~~~~~l~~l~---~~---  203 (426)
                      .+..++...++++-.+++-++|=-.++..-++++..  .+         ...+...++.   -..+.+....   ..   
T Consensus        23 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~  102 (345)
T cd00946          23 CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLL  102 (345)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccc
Confidence            468888888999999999997655443211111100  00         0012222221   1234444433   24   


Q ss_pred             ----------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--
Q 014369          204 ----------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--  271 (426)
Q Consensus       204 ----------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--  271 (426)
                                .+.++.+++.|...|.+=.|  .        .+.+|+++..++++++|+..|+.|++-|-.+-|.++.  
T Consensus       103 ~~~~~~~~a~~~~~~~a~~~GftSVMiDgS--~--------lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~  172 (345)
T cd00946         103 PWFDGLLEADEEYFKQHGEPLFSSHMLDLS--E--------EPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVD  172 (345)
T ss_pred             hhhHHHHHHHHHHHHHhccCCCceEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcc
Confidence                      23344555778888866433  2        3678999999999999999999999888776444332  


Q ss_pred             --------CCCCHHHHHHHHHHHHh-CCCCEEEE--cCCCCCC---CHHHHHHHHHHH----HHhcC-----CceEEEEe
Q 014369          272 --------GAIPPSKVAYVAKELHD-MGCFEISL--GDTIGVG---TPGTVVPMLEAV----MAVVP-----VEKLAVHL  328 (426)
Q Consensus       272 --------~r~~~~~l~~~~~~l~~-~Gad~I~l--~DT~G~~---~P~~v~~li~~l----~~~~p-----~~~i~~H~  328 (426)
                              ..++|+...+++++.-. .|+|.+.+  .-.=|.-   .|.==.++++.+    ++.++     .++|.+|+
T Consensus       173 ~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG  252 (345)
T cd00946         173 NSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG  252 (345)
T ss_pred             cccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC
Confidence                    14799998888876533 47774443  3344443   232223344444    65552     34666665


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEe
Q 014369          329 HDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       329 HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                        .-|..-.....|++.|+.-|+
T Consensus       253 --gSG~~~e~i~kai~~GI~KiN  273 (345)
T cd00946         253 --GSGSTKEEIREAISYGVVKMN  273 (345)
T ss_pred             --CCCCCHHHHHHHHHcCCeeEE
Confidence              558888999999999988554

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=96.40  E-value=0.57  Score=44.90  Aligned_cols=180  Identities=19%  Similarity=0.182  Sum_probs=114.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHH
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIA  212 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~  212 (426)
                      ...+.++..++++...+.|+..+-+-    |.|+|      ...+.++ -.++++.+.+  |   .     ...++.|++
T Consensus        13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~   81 (211)
T TIGR00126        13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVP------LAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAIK   81 (211)
T ss_pred             CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHH------HHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHH
Confidence            36788888899999998888776652    32222      1222222 1346666554  3   1     246788999


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|++.|-+.+..+...     .-..+...+.+..+++.+.  |+.+-+-+.       .+..+.+.+...++.+.++|+|
T Consensus        82 ~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE-------~~~L~~~ei~~a~~ia~eaGAD  147 (211)
T TIGR00126        82 YGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIE-------TGLLTDEEIRKACEICIDAGAD  147 (211)
T ss_pred             cCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEe-------cCCCCHHHHHHHHHHHHHhCCC
Confidence            9999999987755321     1245667777777777775  666554222       1335667888999999999999


Q ss_pred             EEEEcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          293 EISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       293 ~I~l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      -|--.--  .+..+|+++..|-+.+...++. +.. =+-.|+    .-+++=+++|++++-+|
T Consensus       148 fvKTsTGf~~~gat~~dv~~m~~~v~~~v~I-Kaa-GGirt~----~~a~~~i~aGa~riGts  204 (211)
T TIGR00126       148 FVKTSTGFGAGGATVEDVRLMRNTVGDTIGV-KAS-GGVRTA----EDAIAMIEAGASRIGAS  204 (211)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHhccCCeE-EEe-CCCCCH----HHHHHHHHHhhHHhCcc
Confidence            8766522  3456888888877776654332 111 112233    55566677799887554

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.14  Score=51.05  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=134.3

Q ss_pred             HHHHHHhCCCCeEEEecC--CCCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC---------C-hhhHHHHHHcCCCE
Q 014369          153 LIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP---------N-LKGFEAAIAAGAKE  217 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~--~s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------~-~~di~~a~~~Gv~~  217 (426)
                      -+..+.++|++.+=++..  +..-+.|.  .....+++..++++.+ +.+++++-         | .+-++.+.++|+.-
T Consensus        30 sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ag  109 (289)
T COG2513          30 SALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAG  109 (289)
T ss_pred             HHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcce
Confidence            366778999999988743  12333443  2456788888887643 45555552         1 24577888999999


Q ss_pred             EEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          218 VAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       218 V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      |+|-..+-+-   |...+-=.+.+++.++++.+++.+++..+.+.+ =+.+++.   +  -.+...+-+++..++|+|.|
T Consensus       110 i~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~AI~Ra~AY~eAGAD~i  183 (289)
T COG2513         110 IHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDDAIERAQAYVEAGADAI  183 (289)
T ss_pred             eeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHHHHHHHHHHHHcCCcEE
Confidence            9998766552   111222237889999988888777764443321 1111111   1  14555666777889999999


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      +..   |.-.++++..+.+.++  +|. ++-+=-+--..+-..--|+  ++|+++|-..+..+        |+.+.+++.
T Consensus       184 f~~---al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~~~~~L~--~~Gv~~V~~~~~~~--------raa~~a~~~  247 (289)
T COG2513         184 FPE---ALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLLTVAELA--ELGVKRVSYGLTAF--------RAALKAAEQ  247 (289)
T ss_pred             ccc---cCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCcCHHHHH--hcCceEEEECcHHH--------HHHHHHHHH
Confidence            975   5566888888887776  453 2333222222344444444  67999997666655        788999999


Q ss_pred             HHHHHHhCCCC
Q 014369          375 VVYMLSGLGVE  385 (426)
Q Consensus       375 vv~~L~~lG~~  385 (426)
                      ++..+++-|..
T Consensus       248 ~~~~i~~~gt~  258 (289)
T COG2513         248 AAREIRREGTQ  258 (289)
T ss_pred             HHHHHHhcCch
Confidence            99988876643

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=96.34  E-value=1.1  Score=43.43  Aligned_cols=218  Identities=12%  Similarity=0.040  Sum_probs=143.1

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEec
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      +++.-+.-+..|.+-|+..+-+.-... ...+|- -+..+.+..++...+..+.+.+  ....++++..+.++|.+-+=+
T Consensus        40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl-~kf~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDf  118 (275)
T COG1856          40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPL-WKFKDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDF  118 (275)
T ss_pred             chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccH-HHHHHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEee
Confidence            343334555678889999877743322 223442 2334444444444456666655  246788999999999877643


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---cCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---GDT  299 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l---~DT  299 (426)
                      --.+--++..++.  ....+.+.+.+++.++.|++|...|....   +.++...|+  +..+.+.++..|.+.|   -=|
T Consensus       119 vgDn~vIk~vy~l--~ksv~dyl~~l~~L~e~~irvvpHitiGL---~~gki~~e~--kaIdiL~~~~~DalVl~vliPt  191 (275)
T COG1856         119 VGDNDVIKRVYKL--PKSVEDYLRSLLLLKENGIRVVPHITIGL---DFGKIHGEF--KAIDILVNYEPDALVLVVLIPT  191 (275)
T ss_pred             cCChHHHHHHHcC--CccHHHHHHHHHHHHHcCceeceeEEEEe---ccCcccchH--HHHHHHhcCCCCeEEEEEEecC
Confidence            3333334444443  22344556777889999999988887432   334444443  5677888888886654   345


Q ss_pred             CCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          300 IGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       300 ~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      .|.-       .|+++.+.++..|+.+|. ++.+-|---+|-.--- --.|+.+|+|.|.--..|.+|      -++-..
T Consensus       192 pGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~t~e------~ak~~r  264 (275)
T COG1856         192 PGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRGTIE------YAKSIR  264 (275)
T ss_pred             CchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeecCCcccee------hhhhhh
Confidence            5531       357888888888999998 7888888888876433 346899999999999999999      666666


Q ss_pred             HHHHHHH
Q 014369          372 TEDVVYM  378 (426)
Q Consensus       372 lEevv~~  378 (426)
                      .++++.+
T Consensus       265 ~i~~~~~  271 (275)
T COG1856         265 DIEIIYE  271 (275)
T ss_pred             hhhhhhh
Confidence            6666553

>smart00518 AP2Ec AP endonuclease family 2

Probab=96.32  E-value=0.88  Score=44.24  Aligned_cols=202  Identities=16%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccc-cc--cCHHHHHHHhHhcCCCcEEEEeC---C-----h-----------hhHHH
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVP-QL--ADARDVMEAVRDLEGARLPVLTP---N-----L-----------KGFEA  209 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p-~~--~D~~~v~~~i~~~~~~~l~~l~~---~-----~-----------~di~~  209 (426)
                      +.++.+.++|++.+|+.......+.+ .+  .+.+++.+.++. .++++++..+   |     .           +.++.
T Consensus        14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~   92 (273)
T smart00518       14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR   92 (273)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence            35667788999999996432212111 11  112333333332 3455555432   1     1           13456


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH--hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK--VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak--~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      |.+.|++.|.+.....       ...+.++.++++.+.++.+-  +.|+.+  .+....+.+..--.+++.+.++++.+.
T Consensus        93 A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l--~lEn~~~~~~~~~~~~~~~~~ll~~v~  163 (273)
T smart00518       93 CEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVI--LLETTAGKGSQIGSTFEDLKEIIDLIK  163 (273)
T ss_pred             HHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEE--EEeccCCCCCccCCCHHHHHHHHHhcC
Confidence            6678999887754321       12345666666655554443  344433  333221111111236677777776553


Q ss_pred             hCCCCEEEEcCCC-----CC--CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          288 DMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       288 ~~Gad~I~l~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      .. -..-.+-|+.     |.  ..|.++.++++.+.+.++ .--..+|+||..|.          .|-         -+.
T Consensus       164 ~~-~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~---------~~d  223 (273)
T smart00518      164 EL-DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS---------GKD  223 (273)
T ss_pred             CC-CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC---------CCc
Confidence            21 0111222332     22  247788888888776664 33478999998762          111         111


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCC
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~  384 (426)
                      +-.++| .|..+.+.+...|+..++
T Consensus       224 ~H~~~G-~G~id~~~~~~~l~~~~~  247 (273)
T smart00518      224 RHENLG-EGYIGFEPFRLLMADKRF  247 (273)
T ss_pred             cccCCC-CCCCChHHHHHHhhChhh
Confidence            223333 588999999888876433

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=96.25  E-value=0.54  Score=48.10  Aligned_cols=193  Identities=19%  Similarity=0.169  Sum_probs=119.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCc--------cccc---cCHHHHHHHhHh-cC--CCcEEEEe---C--C
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--------VPQL---ADARDVMEAVRD-LE--GARLPVLT---P--N  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~--------~p~~---~D~~~v~~~i~~-~~--~~~l~~l~---~--~  203 (426)
                      .+..++...++++-.+.+.++|=-.+. ..-++        +|+=   .-.+.+...++. .+  ++.+....   .  +
T Consensus        20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~   99 (340)
T cd00453          20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKL   99 (340)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Confidence            467888889999999999998766554 11111        1110   002223333332 12  34444433   4  5


Q ss_pred             hhhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-
Q 014369          204 LKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-  271 (426)
Q Consensus       204 ~~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-  271 (426)
                      .+.++.|+++|           ...|.+=.|  .        .+.+|+++..++++++|+..|+.|++-|-.+-|.++. 
T Consensus       100 ~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS--~--------l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~  169 (340)
T cd00453         100 LPWIDGLLDAGEKHFAATGKPLFSSHMIDLS--E--------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGV  169 (340)
T ss_pred             HHHHHHHHHcCCccccccCCCCceeEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCc
Confidence            67899999999           666666333  2        3578999999999999999999999888876454433 


Q ss_pred             ---------CCCCHHHHHHHHHHHHhCC----CCEEEE--cCCCCCC---CHHHHHHHHHHHHHhc--------CCceEE
Q 014369          272 ---------GAIPPSKVAYVAKELHDMG----CFEISL--GDTIGVG---TPGTVVPMLEAVMAVV--------PVEKLA  325 (426)
Q Consensus       272 ---------~r~~~~~l~~~~~~l~~~G----ad~I~l--~DT~G~~---~P~~v~~li~~l~~~~--------p~~~i~  325 (426)
                               ..++|+...++++   +.|    +|.+.+  .-.=|.-   .|.==.++++.+++.+        ++.+|.
T Consensus       170 ~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLV  246 (340)
T cd00453         170 DNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFV  246 (340)
T ss_pred             ccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceE
Confidence                     1457888777775   455    554333  2233332   2322234455555544        245677


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          326 VHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       326 ~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +|+  --|+.--....|+..|+.-|+
T Consensus       247 lHG--gSG~~~e~~~~ai~~Gi~KiN  270 (340)
T cd00453         247 FHG--GSGSTAQEIKDSVSYGVVKMN  270 (340)
T ss_pred             EeC--CCCCCHHHHHHHHHcCCeEEE
Confidence            665  556677788889999987553

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.24  E-value=0.55  Score=44.48  Aligned_cols=166  Identities=16%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEe
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~  221 (426)
                      .+..+-.++++...+.|.+.|-+--. ....     .+ .+.++.+++..++.+.+  +..+...++.+.++|++.|.+.
T Consensus        28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~-----g~-~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~  101 (217)
T cd00331          28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQ-----GS-LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLI  101 (217)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeCccccC-----CC-HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEe
Confidence            35556789999999999998865311 1110     11 23445555433444443  2345668999999999999987


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG  301 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G  301 (426)
                      ...-+              .+.+++++++++..|+.+.+.+.           +++.    ++.+.+.|++.|.+....+
T Consensus       102 ~~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e----~~~~~~~g~~~i~~t~~~~  152 (217)
T cd00331         102 VAALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE----LERALALGAKIIGINNRDL  152 (217)
T ss_pred             eccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH----HHHHHHcCCCEEEEeCCCc
Confidence            54322              14567778888889988753221           2333    4556678999999887777


Q ss_pred             CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          302 VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      ...+..+ +++..+++.+| ..++-.=    .|-. ..++...+++||+.|
T Consensus       153 ~~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv  198 (217)
T cd00331         153 KTFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV  198 (217)
T ss_pred             cccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence            7676666 66777777763 3233221    1222 378888889999865

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=96.22  E-value=0.17  Score=52.87  Aligned_cols=166  Identities=17%  Similarity=0.071  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEE--eCCh-hh-HHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNL-KG-FEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~~~-~d-i~~a~~~Gv~~V~  219 (426)
                      .+.++.+++++.|.+.++..||+|.+.-..      .-.++++.+++. ++..+-+-  +.+. .- ++.+.++|++.+.
T Consensus       182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~------~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vT  255 (391)
T PRK13307        182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKK------FGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVV  255 (391)
T ss_pred             CCHHHHHHHHHhcccccceEEEECHHHHHH------hCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEE
Confidence            467888999999988878899999743110      112445555543 55444332  2221 22 7788899999988


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--  297 (426)
                      +......               +.+.++++.+|++|+++.+..+   + |   .++.+.    ++.+ ..++|.|.+.  
T Consensus       256 VH~ea~~---------------~ti~~ai~~akk~GikvgVD~l---n-p---~tp~e~----i~~l-~~~vD~Vllht~  308 (391)
T PRK13307        256 ISGLAPI---------------STIEKAIHEAQKTGIYSILDML---N-V---EDPVKL----LESL-KVKPDVVELHRG  308 (391)
T ss_pred             EeccCCH---------------HHHHHHHHHHHHcCCEEEEEEc---C-C---CCHHHH----HHHh-hCCCCEEEEccc
Confidence            8765432               2356788899999988764222   1 1   122233    3333 5688888776  


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 -DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 -DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                       |.-+.  +. .-+.++.+++..+...|.+=+    |....|.-.++++||+++
T Consensus       309 vdp~~~--~~-~~~kI~~ikk~~~~~~I~VdG----GI~~eti~~l~~aGADiv  355 (391)
T PRK13307        309 IDEEGT--EH-AWGNIKEIKKAGGKILVAVAG----GVRVENVEEALKAGADIL  355 (391)
T ss_pred             cCCCcc--cc-hHHHHHHHHHhCCCCcEEEEC----CcCHHHHHHHHHcCCCEE
Confidence             32222  22 223566777654444455543    778888889999999965

>PRK05481 lipoyl synthase; Provisional

Probab=96.22  E-value=0.21  Score=49.90  Aligned_cols=143  Identities=17%  Similarity=0.224  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~  216 (426)
                      .++.++.++.++.+.+.|++.|-+......+ .|.  .....++++.++. .+++++..+.+.    .+.+..+.++|.+
T Consensus        79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d-~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~  157 (289)
T PRK05481         79 PLDPDEPERVAEAVARMGLKYVVITSVDRDD-LPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD  157 (289)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCC-cccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence            4899999999999999999998886432211 010  1124455666664 567777777763    3678888899998


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      .+....-.++... ..++.  ....++..++++.+++.  |+.+...++..|     +. +.+++.+..+.+.+.+.+.+
T Consensus       158 i~~~~~ets~~vl-k~m~r--~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-----GE-T~ed~~~tl~~lrel~~d~v  228 (289)
T PRK05481        158 VFNHNLETVPRLY-KRVRP--GADYERSLELLKRAKELHPGIPTKSGLMVGL-----GE-TDEEVLEVMDDLRAAGVDIL  228 (289)
T ss_pred             eeeccccChHHHH-HHhCC--CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-----CC-CHHHHHHHHHHHHhcCCCEE
Confidence            8887765555322 23332  12344455778889999  999988887544     22 46888888889999999887


Q ss_pred             EE
Q 014369          295 SL  296 (426)
Q Consensus       295 ~l  296 (426)
                      .+
T Consensus       229 ~i  230 (289)
T PRK05481        229 TI  230 (289)
T ss_pred             EE
Confidence            77

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=96.21  E-value=0.54  Score=45.38  Aligned_cols=168  Identities=18%  Similarity=0.181  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCC-hhhHHHHHHcCCCEEE
Q 014369          148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPN-LKGFEAAIAAGAKEVA  219 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~-~~di~~a~~~Gv~~V~  219 (426)
                      ..-.+.++.|.+.|++.+=+    |.|+     |++.-....++.++.. ++..+-+  ++.+ ..-++.+.++|++.|.
T Consensus        19 ~~l~~~~~~l~~~~~~~~H~DimDg~fv-----pn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it   93 (228)
T PTZ00170         19 SKLADEAQDVLSGGADWLHVDVMDGHFV-----PNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT   93 (228)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccCccC-----CCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence            34456778888999987655    4444     4444444566666643 3554443  2334 3567888999999888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE----E
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI----S  295 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I----~  295 (426)
                      +..-..+               ..+.++++.+|++|+.+.+.+.     |   .++.+.+.++.+   .-.+|.|    .
T Consensus        94 vH~ea~~---------------~~~~~~l~~ik~~G~~~gval~-----p---~t~~e~l~~~l~---~~~vD~Vl~m~v  147 (228)
T PTZ00170         94 FHIEATE---------------DDPKAVARKIREAGMKVGVAIK-----P---KTPVEVLFPLID---TDLVDMVLVMTV  147 (228)
T ss_pred             EeccCCc---------------hHHHHHHHHHHHCCCeEEEEEC-----C---CCCHHHHHHHHc---cchhhhHHhhhc
Confidence            8654322               1145778888999988765443     2   246666665541   0011211    1


Q ss_pred             EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       296 l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -+...|...-.+..+.++.+++..+...|.+    |=|.-..|.-.+.++||+++
T Consensus       148 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i  198 (228)
T PTZ00170        148 EPGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI  198 (228)
T ss_pred             ccCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            1223355444455556777777766434444    56777889999999999977

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.19  E-value=0.42  Score=45.45  Aligned_cols=181  Identities=13%  Similarity=0.083  Sum_probs=105.4

Q ss_pred             hcCCCCccEEEeCCccccCCCCCCCC-CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE
Q 014369          120 LKGIPRFVKIVEVGPRDGLQNEKNTV-PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP  198 (426)
Q Consensus       120 ~~~~p~~V~I~D~TLRDG~Q~~~~~f-~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~  198 (426)
                      +..+|+-+.+.-.|+ -|     ..+ +..+..++++++.+.|+..++++.+             +.++.++...++.+.
T Consensus         4 ~~~~~~~~~~~~~~~-~~-----~~~~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~iPil   64 (219)
T cd04729           4 LEQLKGGLIVSCQAL-PG-----EPLHSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVDLPII   64 (219)
T ss_pred             HHHhcCCeEEEccCC-CC-----CCcCcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCCCCEE
Confidence            345688787776665 32     233 4556688999999999999996432             233444432333332


Q ss_pred             E------------EeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEee
Q 014369          199 V------------LTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCV  265 (426)
Q Consensus       199 ~------------l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~  265 (426)
                      +            +.+..+.++.+.++|++.|-+-.+...         ..+  -+...+++++++++| +.+.+.    
T Consensus        65 ~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~---------~p~--~~~~~~~i~~~~~~g~~~iiv~----  129 (219)
T cd04729          65 GLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP---------RPD--GETLAELIKRIHEEYNCLLMAD----  129 (219)
T ss_pred             EEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC---------CCC--CcCHHHHHHHHHHHhCCeEEEE----
Confidence            1            112344789999999997666433211         000  013457777888888 544321    


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHH
Q 014369          266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNIL  340 (426)
Q Consensus       266 fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaL  340 (426)
                             -.++++    ++.+.++|++.|.+.  +..+..  ......++++.+++.+. .++-.    .-|.. ..++.
T Consensus       130 -------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia----~GGI~~~~~~~  193 (219)
T cd04729         130 -------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA----EGRINSPEQAA  193 (219)
T ss_pred             -------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE----eCCCCCHHHHH
Confidence                   123444    356778999988542  222211  11122367788877653 33443    45663 47888


Q ss_pred             HHHHcCCCEE
Q 014369          341 ISLQMGISTV  350 (426)
Q Consensus       341 aAl~aGa~~V  350 (426)
                      .++++||+.|
T Consensus       194 ~~l~~GadgV  203 (219)
T cd04729         194 KALELGADAV  203 (219)
T ss_pred             HHHHCCCCEE
Confidence            8899998865

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK01060 endonuclease IV; Provisional

Probab=96.16  E-value=0.95  Score=44.21  Aligned_cols=206  Identities=16%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHH---HHHHhHhcCCCc---EEEEeC--------Ch-----------
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD---VMEAVRDLEGAR---LPVLTP--------NL-----------  204 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~---v~~~i~~~~~~~---l~~l~~--------~~-----------  204 (426)
                      -.+.++.+.++|++.||+.......+.+...+.++   +.+.++ -.+++   +.+..+        +.           
T Consensus        14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~-~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~   92 (281)
T PRK01060         14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACE-KYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI   92 (281)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHH-HcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence            34677888999999999953211111111112222   222222 12344   332221        11           


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH--HhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA--KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A--k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      +.++.|.+.|++.|.+......      .....+++++++.+.++.+  ...|  |...|....+....--.+++.+.++
T Consensus        93 ~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~~~~~~~~l  164 (281)
T PRK01060         93 QEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGRRFEELARI  164 (281)
T ss_pred             HHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccCCHHHHHHH
Confidence            2345667789998777643210      0112334677777666654  3345  3433443211110011356666666


Q ss_pred             HHHHHhCCCCEEEEcCCCCCC----CH-HHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          283 AKELHDMGCFEISLGDTIGVG----TP-GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~----~P-~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      .+.+.. ....=..-||.=..    .| ....++++.+.+..+ +--..+|+||..+..        ..+.+        
T Consensus       165 ~~~v~~-~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~d--------  227 (281)
T PRK01060        165 IDGVED-KSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRKD--------  227 (281)
T ss_pred             HHhcCC-cccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCCC--------
Confidence            654422 11112333543211    22 344577777766554 224678999976521        00111        


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                         +..++| .|+.+.+.++..|+..|++
T Consensus       228 ---~H~~~G-~G~id~~~~~~~L~~~~y~  252 (281)
T PRK01060        228 ---RHANLG-EGTIGFDALRYIVHDPRFD  252 (281)
T ss_pred             ---cccCCc-CCcCCHHHHHHHHhCcccC
Confidence               112223 5889999999999986653

>PRK08005 epimerase; Validated

Probab=96.16  E-value=0.34  Score=46.39  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .+-++.|.++|++.+=+    |.|+     |++.=...+++.+++..+..+-  .++.+ ..-++..+++|++.|.+..-
T Consensus        16 ~~el~~l~~~g~d~lHiDvMDG~FV-----PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~E   90 (210)
T PRK08005         16 AEALTALHDAPLGSLHLDIEDTSFI-----NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAE   90 (210)
T ss_pred             HHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence            45677888899997555    5554     4443334566777755444443  34555 45688889999998877542


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----EcCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS----LGDT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~----l~DT  299 (426)
                                      +.+...++++++|++|+++...+.     |.   ++.+.+.++...     +|.|-    -+.-
T Consensus        91 ----------------a~~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~~i~~~l~~-----vD~VlvMsV~PGf  141 (210)
T PRK08005         91 ----------------SVQNPSEILADIRAIGAKAGLALN-----PA---TPLLPYRYLALQ-----LDALMIMTSEPDG  141 (210)
T ss_pred             ----------------CccCHHHHHHHHHHcCCcEEEEEC-----CC---CCHHHHHHHHHh-----cCEEEEEEecCCC
Confidence                            223345788899999999875553     32   567777666542     23222    2445


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|...=..+.+-|+.+++..+...|++    |=|....|+-...++||+.+
T Consensus       142 ~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~  188 (210)
T PRK08005        142 RGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHL  188 (210)
T ss_pred             ccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEE
Confidence            566555666667788777665423444    66888899999999999966

>TIGR00510 lipA lipoate synthase

Probab=96.14  E-value=0.14  Score=51.65  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=96.0

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc--ccCHHHHHHHhHh-cCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGAKEV  218 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~~----~~di~~a~~~Gv~~V  218 (426)
                      +.++.+++++.+.+.|++.|-+++-..+++ +.  ..+..++++.++. .|++.+.++++.    .+.++...++|.+.+
T Consensus        92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~  170 (302)
T TIGR00510        92 DPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVY  170 (302)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhh
Confidence            567789999999999999998876433221 11  1224555666664 477888888763    456777889999987


Q ss_pred             EEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          219 AIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       219 ~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      ...+-+++...+. .-+.+.++    ..++++.|++.  |+.+...++..||      -+.+++.+..+.+.+.|++.+.
T Consensus       171 ~hnlEt~~~l~~~vrr~~t~e~----~Le~l~~ak~~~pgi~~~TgiIVGlG------ETeee~~etl~~Lrelg~d~v~  240 (302)
T TIGR00510       171 NHNLETVERLTPFVRPGATYRW----SLKLLERAKEYLPNLPTKSGIMVGLG------ETNEEIKQTLKDLRDHGVTMVT  240 (302)
T ss_pred             cccccchHHHHHHhCCCCCHHH----HHHHHHHHHHhCCCCeecceEEEECC------CCHHHHHHHHHHHHhcCCCEEE
Confidence            7765444433222 22334444    44677788887  7888877875542      2468888999999999999998


Q ss_pred             Ec
Q 014369          296 LG  297 (426)
Q Consensus       296 l~  297 (426)
                      |.
T Consensus       241 ig  242 (302)
T TIGR00510       241 LG  242 (302)
T ss_pred             ee
Confidence            74

The family shows strong sequence conservation.

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH

Probab=96.14  E-value=0.46  Score=48.07  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeCC----hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~~----~~di~~a~~~Gv~~V  218 (426)
                      .++.++.+   +.+++.|+..|.+.- .    .|-+ .|..++++.++.. +..+ .++-|    .+.++...+.+...|
T Consensus        58 ~ls~ee~~---~~i~e~g~~~V~i~G-G----EPLL~pdl~eiv~~~~~~-g~~v-~l~TNG~ll~~~~~~l~~~~~~~i  127 (318)
T TIGR03470        58 RLSVEECL---RAVDECGAPVVSIPG-G----EPLLHPEIDEIVRGLVAR-KKFV-YLCTNALLLEKKLDKFEPSPYLTF  127 (318)
T ss_pred             CCCHHHHH---HHHHHcCCCEEEEeC-c----cccccccHHHHHHHHHHc-CCeE-EEecCceehHHHHHHHHhCCCcEE
Confidence            45666544   456678998877742 1    2322 2445556555432 3333 33333    234666667787777


Q ss_pred             EEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          219 AIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       219 ~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .|.+ +..+.|-+..   ..+..++++.+.++.+++.|+.|.++... +     ...+++++.++++.+.+.|++.+.+.
T Consensus       128 ~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~v~v~~tv-~-----~~~n~~ei~~~~~~~~~lGv~~i~i~  198 (318)
T TIGR03470       128 SVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFRVTTNTTL-F-----NDTDPEEVAEFFDYLTDLGVDGMTIS  198 (318)
T ss_pred             EEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCcEEEEEEE-e-----CCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            7764 3334443321   22345777888899999999987754432 1     24678999999999999999988773


Q ss_pred             C---------CCCCCCHHHHHHHHHHHHHh
Q 014369          298 D---------TIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       298 D---------T~G~~~P~~v~~li~~l~~~  318 (426)
                      -         .--.+.+.+..++++.+.+.
T Consensus       199 p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~  228 (318)
T TIGR03470       199 PGYAYEKAPDQDHFLGRRQTKKLFREVLSN  228 (318)
T ss_pred             cCcccccccccccccCHHHHHHHHHHHHhh
Confidence            1         12245677778887777653

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=96.12  E-value=0.49  Score=46.12  Aligned_cols=202  Identities=15%  Similarity=0.101  Sum_probs=99.4

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCC-ccc-cc--cCHHHHHHHhHhcCCCcEEEEe-----------CC-----------hh
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPK-WVP-QL--ADARDVMEAVRDLEGARLPVLT-----------PN-----------LK  205 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~-~~p-~~--~D~~~v~~~i~~~~~~~l~~l~-----------~~-----------~~  205 (426)
                      +.++.+.++|++.||+...-... ..+ .+  .+..++.+.++. .++++.+++           ++           .+
T Consensus        20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~   98 (284)
T PRK13210         20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-TGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK   98 (284)
T ss_pred             HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-cCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence            35566678999999997431100 000 11  112333333332 345555432           11           12


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      -++.|.+.|++.|++...  +.+.........+...+.+.+++++|+++|+.+..  ...   +...-.+++.+..+++.
T Consensus        99 ~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E~~---~~~~~~~~~~~~~l~~~  171 (284)
T PRK13210         99 AIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV--EIM---DTPFMNSISKWKKWDKE  171 (284)
T ss_pred             HHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE--Eec---CccccCCHHHHHHHHHH
Confidence            345667789999987421  10000000112456677788889999999987652  211   11112345555555543


Q ss_pred             HHhCCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          286 LHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       286 l~~~Gad~I~l~-DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                         .+-+.+.+. |+. .+.=. -......++. ...--..+|.+|..+.-..      ..|.         .-.  ..+
T Consensus       172 ---v~~~~~~~~~D~~-h~~~~-~~~~~~~l~~-~~~~i~~vHikD~~~~~~~------~~g~---------~~~--~p~  228 (284)
T PRK13210        172 ---IDSPWLTVYPDVG-NLSAW-GNDVWSELKL-GIDHIAAIHLKDTYAVTET------SKGQ---------FRD--VPF  228 (284)
T ss_pred             ---cCCCceeEEecCC-hhhhc-CCCHHHHHHH-hcCeEEEEEeccccccccC------CCCc---------ccc--ccC
Confidence               344444443 552 11100 0112223322 2222478899997642100      0011         001  112


Q ss_pred             CCCCcccHHHHHHHHHhCCCC
Q 014369          365 GASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       365 graGNa~lEevv~~L~~lG~~  385 (426)
                      | .|+.+..+++.+|+..|++
T Consensus       229 G-~G~id~~~~~~~L~~~gy~  248 (284)
T PRK13210        229 G-EGCVDFVGIFKTLKELNYR  248 (284)
T ss_pred             C-CcccCHHHHHHHHHHcCCC
Confidence            3 6899999999999987765

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=96.12  E-value=0.16  Score=49.36  Aligned_cols=168  Identities=13%  Similarity=0.120  Sum_probs=101.9

Q ss_pred             HHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEeccCCh
Q 014369          154 IRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIFASASE  226 (426)
Q Consensus       154 ~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~~~~Sd  226 (426)
                      ++.|.+ |++.+=+    |.|+     |+++=...+++.+++..+..+  -.++.+ ..-++..+++|++.|.+..-+.+
T Consensus        21 l~~l~~-g~d~lH~DiMDG~FV-----PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~   94 (229)
T PRK09722         21 IEFLNS-KADYFHIDIMDGHFV-----PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETIN   94 (229)
T ss_pred             HHHHHh-CCCEEEEecccCccC-----CCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCc
Confidence            355666 8886555    5554     444333456777776544433  445655 45788999999998888643211


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Q 014369          227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG  306 (426)
Q Consensus       227 ~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~  306 (426)
                                     ....++++++|++|+++...+.     |.   ++.+.+.++...+.-.=+=.+. +.-.|...-.
T Consensus        95 ---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~l~~vD~VLvMsV~-PGf~GQ~fi~  150 (229)
T PRK09722         95 ---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYYIHLLDKITVMTVD-PGFAGQPFIP  150 (229)
T ss_pred             ---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHHHHhcCEEEEEEEc-CCCcchhccH
Confidence                           2345788899999999875543     32   5677777666532111111111 3444555555


Q ss_pred             HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .+.+-|+.+++..+...+.+..-=|=|.-..|+-...++||+.+=
T Consensus       151 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V  195 (229)
T PRK09722        151 EMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI  195 (229)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence            566667777765432122333334668888999999999999773

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=96.11  E-value=1.8  Score=43.44  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             EEEeCC---ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHH---HHHHhHhcC---CCcEE
Q 014369          128 KIVEVG---PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD---VMEAVRDLE---GARLP  198 (426)
Q Consensus       128 ~I~D~T---LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~---v~~~i~~~~---~~~l~  198 (426)
                      =|+-+|   +=||++    .++.+..++-+..+.+.|.+.|++|.-++.+..+.....+|   +...++.+.   ++.++
T Consensus        19 GIlNvTpDSFsdgg~----~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS   94 (282)
T PRK11613         19 GILNVTPDSFSDGGT----HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWIS   94 (282)
T ss_pred             EEEcCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            345444   346655    36889999999999999999999996554222221211233   222333322   34444


Q ss_pred             EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--CC-
Q 014369          199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IP-  275 (426)
Q Consensus       199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--~~-  275 (426)
                      +=+.+.+-++.|+++|++.|.=..+.++           ++       +++.+++.|..+.  ++..-|.|....  .. 
T Consensus        95 IDT~~~~va~~AL~~GadiINDI~g~~d-----------~~-------~~~~~a~~~~~vV--lmh~~g~p~~~~~~~~y  154 (282)
T PRK11613         95 VDTSKPEVIRESAKAGAHIINDIRSLSE-----------PG-------ALEAAAETGLPVC--LMHMQGNPKTMQEAPKY  154 (282)
T ss_pred             EECCCHHHHHHHHHcCCCEEEECCCCCC-----------HH-------HHHHHHHcCCCEE--EEcCCCCCCccccCCCc
Confidence            4456778889999999998754433222           12       2223456676665  454434333211  11 


Q ss_pred             -------HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHH
Q 014369          276 -------PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVM  316 (426)
Q Consensus       276 -------~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~  316 (426)
                             ..++.+.++.+.++|++  .|.+==-.|.. ++++-.++++.+.
T Consensus       155 ~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~  205 (282)
T PRK11613        155 DDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLA  205 (282)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHH
Confidence                   14666777888899985  55443334543 3455566666554

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=96.07  E-value=0.26  Score=48.54  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE-------EeC--C----hhhHHHHH
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-------LTP--N----LKGFEAAI  211 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-------l~~--~----~~di~~a~  211 (426)
                      .+.++..++++...+.|++.|-+...    +++.      ..+.+.  .++.+.+       +.+  .    ...++.|+
T Consensus        36 ~~~~d~~~~~~~a~~~~~~av~v~~~----~~~~------~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~  103 (267)
T PRK07226         36 DGLVDIRDTVNKVAEGGADAVLMHKG----LARH------GHRGYG--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI  103 (267)
T ss_pred             cCcCCHHHHHHHHHhcCCCEEEeCHh----HHhh------hccccC--CCCcEEEEEcCCCCCCCCCCcceeeecHHHHH
Confidence            36667778899999999988877521    1110      001110  1221111       111  1    23588999


Q ss_pred             HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      +.|++.|.+.+.....        ..++.++.+.++++.+++.|+.+.+. .+..|....+..+++.+...++.+.++|+
T Consensus       104 ~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi-~~~~g~~~e~~~~~~~i~~a~~~a~e~GA  174 (267)
T PRK07226        104 KLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAM-MYPRGPGIKNEYDPEVVAHAARVAAELGA  174 (267)
T ss_pred             HcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEE-EecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence            9999987776543321        13467888889999999999987652 22222212233567888888899999999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEeCC--CcCcHHHHHHHHHHcCCCEE
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHD--TYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~--~p~~~i~~H~HN--d~GlA~ANaLaAl~aGa~~V  350 (426)
                      |.|-..=+ |  .+    ++++.+.+.  +|.  +..=+-+  |+-.++++.-.++++||+.+
T Consensus       175 D~vKt~~~-~--~~----~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gi  228 (267)
T PRK07226        175 DIVKTNYT-G--DP----ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGV  228 (267)
T ss_pred             CEEeeCCC-C--CH----HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence            99966511 1  22    334444443  453  3333344  77788999999999999955

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.04  E-value=0.59  Score=44.66  Aligned_cols=178  Identities=13%  Similarity=0.086  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChH
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEA  227 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~  227 (426)
                      ++..++++.+.++|.+.|++|--..-.    .....++++.+|+..+..+..+--+...+-    -++|-+-+..=    
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGGS~gvt----~~~~~~~v~~ik~~~~lPvilfp~~~~~i~----~~aD~~~~~sl----   78 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGGSLGIV----ESNLDQTVKKIKKITNLPVILFPGNVNGLS----RYADAVFFMSL----   78 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcCCCC----HHHHHHHHHHHHhhcCCCEEEECCCccccC----cCCCEEEEEEe----
Confidence            455668999999999999998422100    011233344455422233332222443322    34665554421    


Q ss_pred             HHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcE--EEEEEeeecCCC-----C---CCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          228 FSKSNINC-SIEDSLVRYRAVAHAAKVLSIPV--RGYVSCVVGCPV-----E---GAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       228 ~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v--~~~v~~~fg~pd-----~---~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                           +|. +.+..+..-.+.+-..|+.|.++  ++|+...-++-.     +   -+.+++....++..+..+|++.|+|
T Consensus        79 -----lns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L  153 (205)
T TIGR01769        79 -----LNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL  153 (205)
T ss_pred             -----ecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence                 111 22333333334444457878754  455543211111     0   1247889999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH---HHHHHHHHcCCCEE
Q 014369          297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL---PNILISLQMGISTV  350 (426)
Q Consensus       297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~---ANaLaAl~aGa~~V  350 (426)
                      .|..|...|.. .++++.+++... .++.+      |-|+   ..+-.++.+|||.|
T Consensus       154 e~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~v------GGGIrs~e~a~~l~~~GAD~V  202 (205)
T TIGR01769       154 EAGSGASYPVN-PETISLVKKASG-IPLIV------GGGIRSPEIAYEIVLAGADAI  202 (205)
T ss_pred             EcCCCCCCCCC-HHHHHHHHHhhC-CCEEE------eCCCCCHHHHHHHHHcCCCEE
Confidence            99988864433 666777777652 23332      3333   34444557888876

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.02  E-value=0.87  Score=43.29  Aligned_cols=179  Identities=13%  Similarity=0.075  Sum_probs=104.8

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--  200 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--  200 (426)
                      +|+.+.+.-.+. .|.-    .-+.++-.++++...+.|...++++.             .+.++.++...+..+..+  
T Consensus         3 ~~~~~~~~~~~~-~~~~----~~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~~~Pil~~~~   64 (221)
T PRK01130          3 LKGGLIVSCQAL-PGEP----LHSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVVDVPIIGIIK   64 (221)
T ss_pred             cCCCEEEEecCC-CCCC----CCCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhCCCCEEEEEe
Confidence            455565555544 3322    22566779999999999999999752             133445554334443222  


Q ss_pred             ---------e-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCC
Q 014369          201 ---------T-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCP  269 (426)
Q Consensus       201 ---------~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~p  269 (426)
                               . +..+.++.+.++|++.|-+-.+..+.         ..  -+.+.++++++++ .++.+.+.        
T Consensus        65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---------p~--~~~~~~~i~~~~~~~~i~vi~~--------  125 (221)
T PRK01130         65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---------PD--GETLAELVKRIKEYPGQLLMAD--------  125 (221)
T ss_pred             cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CCCHHHHHHHHHhCCCCeEEEe--------
Confidence                     1 23457899999999966664432110         00  0224567778888 77765421        


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHH
Q 014369          270 VEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQ  344 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~  344 (426)
                      .   .+++.    ++.+.++|+|.|.+.  +..+.  .....-..+++.+++.+. .++..    ..|.. ..++..+++
T Consensus       126 v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~GGI~t~~~~~~~l~  193 (221)
T PRK01130        126 C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----EGRINTPEQAKKALE  193 (221)
T ss_pred             C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHHH
Confidence            1   23444    356788999988652  11111  111122457777777653 23433    56774 578888899


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      +||+.|
T Consensus       194 ~GadgV  199 (221)
T PRK01130        194 LGAHAV  199 (221)
T ss_pred             CCCCEE
Confidence            999876

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=96.02  E-value=0.36  Score=48.61  Aligned_cols=209  Identities=11%  Similarity=0.055  Sum_probs=125.4

Q ss_pred             HHHHHhCCCCeEEEe-cCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------C----hhhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEAT-SFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------N----LKGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG-~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~----~~di~~a~~~Gv~~  217 (426)
                      ++.+.++|++.+=++ +..  +.-++|.  +.+..+++..++++.+ +.+++++-      +    .+-++...++|+.-
T Consensus        29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaag  108 (294)
T TIGR02319        29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVG  108 (294)
T ss_pred             HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence            566688899999874 322  2233443  3456777777776532 34455442      1    13467888999999


Q ss_pred             EEEeccCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          218 VAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       218 V~i~~~~Sd~~~~---~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      |+|-..+.+-+.-   .+-=.+.++..++++.+.+..++-.+-+.+-. .++     .....+...+-+++..++|||.|
T Consensus       109 i~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART-Da~-----~~~g~deaI~Ra~aY~eAGAD~i  182 (294)
T TIGR02319       109 YHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART-DAR-----ESFGLDEAIRRSREYVAAGADCI  182 (294)
T ss_pred             EEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe-ccc-----ccCCHHHHHHHHHHHHHhCCCEE
Confidence            9999876542111   11113778888888766554444233222111 111     11245677777888889999999


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      .+.   |.-+++++..+.+.+.  .|. .+.+-......+=  +.-.--++|+++|-.....+        ++-..++.+
T Consensus       183 fi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~  246 (294)
T TIGR02319       183 FLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW--------MAAASVLRK  246 (294)
T ss_pred             Eec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH--------HHHHHHHHH
Confidence            996   6778888777776652  232 1234433333322  23344466999987766655        456677888


Q ss_pred             HHHHHHhCCC
Q 014369          375 VVYMLSGLGV  384 (426)
Q Consensus       375 vv~~L~~lG~  384 (426)
                      .+..|+..|.
T Consensus       247 ~~~~l~~~G~  256 (294)
T TIGR02319       247 LFTELREAGT  256 (294)
T ss_pred             HHHHHHHcCC
Confidence            8887776554

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=96.01  E-value=0.72  Score=45.43  Aligned_cols=187  Identities=18%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHH----HhHhcC---CCcEEEEeCChhhHHHHHHc
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVME----AVRDLE---GARLPVLTPNLKGFEAAIAA  213 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~----~i~~~~---~~~l~~l~~~~~di~~a~~~  213 (426)
                      +..++.+..++.+..+.+.|.+.|++|.-++ |.. +. -+.++.++    .++.+.   +..++.=+.+.+-+++|++.
T Consensus        18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~-i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~   95 (257)
T cd00739          18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DP-VSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEA   95 (257)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CC-CCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHh
Confidence            3357889999999999999999999996443 321 11 12222222    233322   34443334677889999999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-----C-----CHHHHHHHH
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-----I-----PPSKVAYVA  283 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-----~-----~~~~l~~~~  283 (426)
                      |++.|.=.-...               . + .++++.++++|..+.+  +..-|.|....     .     -..++.+..
T Consensus        96 G~~iINdisg~~---------------~-~-~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i  156 (257)
T cd00739          96 GADIINDVSGGS---------------D-D-PAMLEVAAEYGAPLVL--MHMRGTPKTMQENPYYEDVVDEVLSFLEARL  156 (257)
T ss_pred             CCCEEEeCCCCC---------------C-C-hHHHHHHHHcCCCEEE--ECCCCCCcccccCCCcccHHHHHHHHHHHHH
Confidence            988665221100               0 0 2445567788877663  43222221100     0     113456667


Q ss_pred             HHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHH---Hh-cCCceEEE------------EeCCCcCcHHHHHHHHHH
Q 014369          284 KELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVM---AV-VPVEKLAV------------HLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       284 ~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~---~~-~p~~~i~~------------H~HNd~GlA~ANaLaAl~  344 (426)
                      +.+.++|++  .|.+==-+|.. ++++-.++++.++   +. +|. -+++            ..++..+--+|-+..|++
T Consensus       157 ~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~  235 (257)
T cd00739         157 EAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAA  235 (257)
T ss_pred             HHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHH
Confidence            778889975  55553333432 2444455555544   21 342 1332            334555666677777888


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      .||++|
T Consensus       236 ~Ga~ii  241 (257)
T cd00739         236 NGADIV  241 (257)
T ss_pred             cCCCEE
Confidence            999877

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PRK09989 hypothetical protein; Provisional

Probab=96.01  E-value=0.4  Score=46.45  Aligned_cols=186  Identities=10%  Similarity=0.023  Sum_probs=100.5

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----------------C-----hh----
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----------------N-----LK----  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----------------~-----~~----  205 (426)
                      .+.++.+.++|++.||+..+..       .+.+++.+.++. .++++++++.                .     .+    
T Consensus        18 ~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (258)
T PRK09989         18 IERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDL   89 (258)
T ss_pred             HHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHH
Confidence            4577888999999999964321       234566655542 3344443321                0     11    


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -++.|.+.|++.|+++.+..+      -+.+    .+...+.+.++.++|++.|+.+...-......+...-.+.+.+  
T Consensus        90 ~i~~A~~lg~~~v~v~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~--  161 (258)
T PRK09989         90 ALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQA--  161 (258)
T ss_pred             HHHHHHHhCcCEEEECccCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHH--
Confidence            234556789998887643211      0112    2345677778888999999876521110000010011123333  


Q ss_pred             HHHHHHhCCCCEE-EEcCCCCCCCHH-HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          282 VAKELHDMGCFEI-SLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       282 ~~~~l~~~Gad~I-~l~DT~G~~~P~-~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                       .+.+.+.+.+.+ ..-|+.-...++ ++..+++....+    -..+|.++..+                         +
T Consensus       162 -~~ll~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r----i~hvHi~D~~~-------------------------~  211 (258)
T PRK09989        162 -LAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK----YAHVQIAGLPD-------------------------R  211 (258)
T ss_pred             -HHHHHHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh----EEEEEECCCCC-------------------------C
Confidence             334445554434 566776554442 334444443332    35678875211                         1


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +  .+| .|..+...++.+|++.|++
T Consensus       212 ~--~pG-~G~id~~~i~~al~~~Gy~  234 (258)
T PRK09989        212 H--EPD-DGEINYPWLFRLFDEVGYQ  234 (258)
T ss_pred             C--CCC-CCCcCHHHHHHHHHHcCCC
Confidence            1  123 5889999999999998876

>TIGR02317 prpB methylisocitrate lyase

Probab=95.98  E-value=0.23  Score=49.76  Aligned_cols=208  Identities=16%  Similarity=0.083  Sum_probs=122.5

Q ss_pred             HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------Ch----hhHHHHHHcCCCEE
Q 014369          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------NL----KGFEAAIAAGAKEV  218 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~~----~di~~a~~~Gv~~V  218 (426)
                      ++...++|++.|=+++..  ..-+.|.  +-+..++++.++++.. +.+++++-      +.    +-++...++|+.-|
T Consensus        26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi  105 (285)
T TIGR02317        26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAV  105 (285)
T ss_pred             HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            455677899999887542  1223443  3466778887776532 34444442      22    34778889999999


Q ss_pred             EEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCCHHHHHHHHHHHHhCCCCEE
Q 014369          219 AIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      +|-..+.+-..-+.-+   .+.++..++++.+.+..++-.+-+.   ..+    |+ .....+...+-+++..++|||.|
T Consensus       106 ~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii---ART----Da~~~~g~deAI~Ra~ay~~AGAD~v  178 (285)
T TIGR02317       106 HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVII---ART----DARAVEGLDAAIERAKAYVEAGADMI  178 (285)
T ss_pred             EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEE---EEc----CcccccCHHHHHHHHHHHHHcCCCEE
Confidence            9998765422111111   3678888887655544432222111   111    11 12246677777888889999999


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      .+.   |.-+++++.++.+.+.  .|. .+.+-..+..++=  +.-.--++|+++|-.....+        ++-+.++++
T Consensus       179 fi~---g~~~~e~i~~~~~~i~--~Pl-~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~~--------~aa~~a~~~  242 (285)
T TIGR02317       179 FPE---ALTSLEEFRQFAKAVK--VPL-LANMTEFGKTPLF--TADELREAGYKMVIYPVTAF--------RAMNKAAEA  242 (285)
T ss_pred             EeC---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEchHHH--------HHHHHHHHH
Confidence            995   5667777776666542  232 1133322221211  23344577999997766655        466777888


Q ss_pred             HHHHHHhCCC
Q 014369          375 VVYMLSGLGV  384 (426)
Q Consensus       375 vv~~L~~lG~  384 (426)
                      .+..|+..|.
T Consensus       243 ~~~~l~~~g~  252 (285)
T TIGR02317       243 VYNEIKEHGT  252 (285)
T ss_pred             HHHHHHHcCC
Confidence            8888876554

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.61  Score=44.98  Aligned_cols=168  Identities=19%  Similarity=0.196  Sum_probs=112.1

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      -+-++.+.++|++.|=+    |.|     +|+++=...+++.+++.....+-  .++.+ .+-++..+++|++.|-+..-
T Consensus        19 ~~el~~~~~agad~iH~DVMDghF-----VPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E   93 (220)
T COG0036          19 GEELKALEAAGADLIHIDVMDGHF-----VPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE   93 (220)
T ss_pred             HHHHHHHHHcCCCEEEEeccCCCc-----CCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEec
Confidence            45677788999997655    444     45555456778888875444443  34544 56788899999998888653


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT  299 (426)
                                      +-..+.++++++|++|.++.+.+.     |   .++.+.+..+...     +|.|-+    +.-
T Consensus        94 ----------------~~~~~~r~i~~Ik~~G~kaGv~ln-----P---~Tp~~~i~~~l~~-----vD~VllMsVnPGf  144 (220)
T COG0036          94 ----------------ATEHIHRTIQLIKELGVKAGLVLN-----P---ATPLEALEPVLDD-----VDLVLLMSVNPGF  144 (220)
T ss_pred             ----------------cCcCHHHHHHHHHHcCCeEEEEEC-----C---CCCHHHHHHHHhh-----CCEEEEEeECCCC
Confidence                            233456888999999998875442     3   2456666665543     333333    455


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE-eec
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV-DCS  353 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V-D~S  353 (426)
                      .|...-.++-+-++.+++..+... .+-.-=|=|.-..|+-.+.+|||+.+ -+|
T Consensus       145 gGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS  198 (220)
T COG0036         145 GGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS  198 (220)
T ss_pred             cccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence            666666777777888888776311 22333367899999999999999965 444

>TIGR00284 dihydropteroate synthase-related protein

Probab=95.91  E-value=1  Score=48.58  Aligned_cols=174  Identities=18%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEEEeccC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      +..++-+..+.+.|.+.|++|..+...      +.+.+...++.+   .+..++.=+.+.+-+++|+++|++.|.   ++
T Consensus       165 ~~i~~~A~~~~~~GADIIDIG~~st~p------~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN---sV  235 (499)
T TIGR00284       165 DGIEGLAARMERDGADMVALGTGSFDD------DPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI---MP  235 (499)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCCC------cHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE---EC
Confidence            667888999999999999999765421      233455555433   245555546788899999999999766   33


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT  304 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~  304 (426)
                      |.            ..+   .++...+++.|..+.  ++.     .......+++.+.++.+.++|.+.|.+==-.|. .
T Consensus       236 s~------------~~~---d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~-~  292 (499)
T TIGR00284       236 DV------------ENA---VELASEKKLPEDAFV--VVP-----GNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP-P  292 (499)
T ss_pred             Cc------------cch---hHHHHHHHHcCCeEE--EEc-----CCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc-c
Confidence            32            112   245556677777664  232     111223478888999999999976444323332 3


Q ss_pred             HHHHHHHHHHHH---HhcCCceE--EEE-e-----CCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          305 PGTVVPMLEAVM---AVVPVEKL--AVH-L-----HDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       305 P~~v~~li~~l~---~~~p~~~i--~~H-~-----HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      +..+.+-+..++   +.++. ++  ++= .     =+..|.-.+-+..|++.||++|=++=
T Consensus       293 ~~~l~~sL~~l~~~r~~~~~-Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd  352 (499)
T TIGR00284       293 LLGLLESIIRFRRASRLLNV-PLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE  352 (499)
T ss_pred             hHHHHHHHHHHHHHHHhcCC-cEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence            344555455554   34542 32  320 0     13445555666778899999884443

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=95.86  E-value=0.97  Score=44.12  Aligned_cols=205  Identities=18%  Similarity=0.130  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-+++++.+.+.|++.+=+.-......  ......++.+.+.+..+.++.+  -+++.++++.++..|++.|.+...+ 
T Consensus        30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~-  106 (254)
T TIGR00735        30 GDPVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA-  106 (254)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH-
Confidence            3568899999999999877753221110  0011233444444333444443  3478999999999999998765321 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEeeecCCC------------CCCCCHHHHHHHHHHHHhCCCC
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPV------------EGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~fg~pd------------~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                        +          +..+.+.++   ++..| -++.+.+-. ...+.            ........+.++++.+.++|++
T Consensus       107 --~----------~~p~~~~~~---~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~  170 (254)
T TIGR00735       107 --V----------KNPELIYEL---ADRFGSQCIVVAIDA-KRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG  170 (254)
T ss_pred             --h----------hChHHHHHH---HHHcCCCCEEEEEEe-ccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence              0          112222232   23334 334433321 10000            0011234567788899999999


Q ss_pred             EEEE--cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE-eecccCCCCCCCCCCCCC
Q 014369          293 EISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV-DCSVAGLGGCPYAKGASG  368 (426)
Q Consensus       293 ~I~l--~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V-D~Sv~GlGecP~a~graG  368 (426)
                      .|.+  -|..|.+...+ .++++.+++..+. ++-..+=-.   ...-+..++..| |+.| -++..          -.|
T Consensus       171 ~iivt~i~~~g~~~g~~-~~~~~~i~~~~~i-pvia~GGi~---s~~di~~~~~~g~~dgv~~g~a~----------~~~  235 (254)
T TIGR00735       171 EILLTSMDKDGTKSGYD-LELTKAVSEAVKI-PVIASGGAG---KPEHFYEAFTKGKADAALAASVF----------HYR  235 (254)
T ss_pred             EEEEeCcCcccCCCCCC-HHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCcceeeEhHHH----------hCC
Confidence            9999  55555543333 4567788777653 455543111   122334555656 7764 22222          235


Q ss_pred             cccHHHHHHHHHhCCCCC
Q 014369          369 NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       369 Na~lEevv~~L~~lG~~~  386 (426)
                      ..+++++...|+..|+..
T Consensus       236 ~~~~~~~~~~~~~~gi~~  253 (254)
T TIGR00735       236 EITIGEVKEYLAERGIPV  253 (254)
T ss_pred             CCCHHHHHHHHHHCCCcc
Confidence            678999998998887753

>TIGR01210 conserved hypothetical protein TIGR01210

Probab=95.86  E-value=0.36  Score=48.81  Aligned_cols=126  Identities=17%  Similarity=0.210  Sum_probs=75.8

Q ss_pred             ecCCCCCccccccCHHHHHHHhHhcCCC-cEEEEeC----ChhhHHHHHHcCCC-EEEEec-cCChHHHhhhcCCCHHHH
Q 014369          168 TSFVSPKWVPQLADARDVMEAVRDLEGA-RLPVLTP----NLKGFEAAIAAGAK-EVAIFA-SASEAFSKSNINCSIEDS  240 (426)
Q Consensus       168 G~~~s~~~~p~~~D~~~v~~~i~~~~~~-~l~~l~~----~~~di~~a~~~Gv~-~V~i~~-~~Sd~~~~~~~~~s~~e~  240 (426)
                      |+|..+..+|. ....++++.++..+.. ++.+-++    +.+.++.+.++|+. .|.+.+ +.++.-++..+|+..  .
T Consensus        77 gsf~D~~~~~~-~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~--t  153 (313)
T TIGR01210        77 GSFLDDREVPK-ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS--T  153 (313)
T ss_pred             CCcCCcCcCCH-HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC--C
Confidence            34555443431 1123444445443322 3444343    24567778889998 688876 556655543455432  2


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      .+.+.++++.++++|+.+.++++  +|.|..+. -+.+.+.+.++.+.+++ +.|.+--+
T Consensus       154 ~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l  210 (313)
T TIGR01210       154 FEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPT  210 (313)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECC
Confidence            44566888899999999988887  67775432 24566667788888888 77775433

This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=95.76  E-value=0.5  Score=47.51  Aligned_cols=208  Identities=17%  Similarity=0.124  Sum_probs=122.8

Q ss_pred             HHHHHhCCCCeEEEecC--C-CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------Ch----hhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSF--V-SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------NL----KGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~--~-s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~~----~di~~a~~~Gv~~  217 (426)
                      ++...++|++.|=++++  + +.-+.|.  +-+..++++.++++.+ +.+++++-      +.    +-++...++|+.-
T Consensus        30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag  109 (292)
T PRK11320         30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA  109 (292)
T ss_pred             HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            45667889999988653  2 2234454  3466778888876543 34455442      22    3477888999999


Q ss_pred             EEEeccCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCCHHHHHHHHHHHHhCCCCE
Q 014369          218 VAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~---~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |+|-..+.+-+.-+.-+   .+.++..++++.+++..+.-.+-+.   ..+    |+ .....++..+-+++..++|||.
T Consensus       110 i~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii---ART----Da~~~~g~deAI~Ra~aY~eAGAD~  182 (292)
T PRK11320        110 VHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIM---ART----DALAVEGLDAAIERAQAYVEAGADM  182 (292)
T ss_pred             EEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEE---Eec----CcccccCHHHHHHHHHHHHHcCCCE
Confidence            99988765422211112   3778888888766554442222221   111    11 1224667777788889999999


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATE  373 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lE  373 (426)
                      |.+.   |.-++++++++.+.+.  .|. .+.+-.....++=  +.-.--++|+++|-.....+        ++-..+++
T Consensus       183 ifi~---~~~~~~~i~~~~~~~~--~Pl-~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--------~aa~~a~~  246 (292)
T PRK11320        183 IFPE---AMTELEMYRRFADAVK--VPI-LANITEFGATPLF--TTEELASAGVAMVLYPLSAF--------RAMNKAAE  246 (292)
T ss_pred             EEec---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--------HHHHHHHH
Confidence            9996   5667888888777652  342 1122221211111  12233467999986665544        45566777


Q ss_pred             HHHHHHHhCCC
Q 014369          374 DVVYMLSGLGV  384 (426)
Q Consensus       374 evv~~L~~lG~  384 (426)
                      +++..++..|.
T Consensus       247 ~~~~~l~~~g~  257 (292)
T PRK11320        247 NVYEAIRRDGT  257 (292)
T ss_pred             HHHHHHHHcCC
Confidence            77777776554

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=95.76  E-value=0.87  Score=45.90  Aligned_cols=137  Identities=21%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCC-CcEEEEeCC---hhhHHHHHHcCCCE
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEG-ARLPVLTPN---LKGFEAAIAAGAKE  217 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~-~~l~~l~~~---~~di~~a~~~Gv~~  217 (426)
                      ..++.++..++++.+.+.|+..|.++. ..    |-+ .|..++++.++..++ ..+.+.+..   .+.++...++|++.
T Consensus        47 ~~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~  121 (331)
T PRK00164         47 ELLSLEEIERLVRAFVALGVRKVRLTG-GE----PLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDR  121 (331)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCE
Confidence            358999999999999999999988853 22    322 345566666665433 333333332   24466677899999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      |.|.+..-+.-....++  ....++++.+.++.+++.|+ .+.++....   +   ..+.+.+.++++.+.+.|++
T Consensus       122 i~ISlds~~~e~~~~i~--~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~---~---g~n~~ei~~l~~~~~~~gv~  189 (331)
T PRK00164        122 VNVSLDSLDPERFKAIT--GRDRLDQVLAGIDAALAAGLTPVKVNAVLM---K---GVNDDEIPDLLEWAKDRGIQ  189 (331)
T ss_pred             EEEEeccCCHHHhccCC--CCCCHHHHHHHHHHHHHCCCCcEEEEEEEE---C---CCCHHHHHHHHHHHHhCCCe
Confidence            98887442221112222  22457778888889999998 666543221   1   12447888888888899986

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=95.75  E-value=0.42  Score=46.05  Aligned_cols=180  Identities=19%  Similarity=0.259  Sum_probs=115.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEecc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .|..+....++++-...|.++|++-           +|+ ++.+.++...+..+++=.-..+.+-.+.++|++.|.|.-.
T Consensus        23 NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp-~LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf   90 (242)
T PF04481_consen   23 NFDAESVAAIVKAAEIGGATFVDIA-----------ADP-ELVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNF   90 (242)
T ss_pred             ccCHHHHHHHHHHHHccCCceEEec-----------CCH-HHHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecch
Confidence            4899999999999999999999996           354 5667778777777766666677888899999998888633


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                        |.|-......+.+|.|+    +.+..|++=-.+...++  +  |.  -.+.+.=.+++..|.++|+|.|.=   -|..
T Consensus        91 --DsFY~qGr~f~a~eVL~----Lt~~tR~LLP~~~LsVT--V--PH--iL~ld~Qv~LA~~L~~~GaDiIQT---EGgt  155 (242)
T PF04481_consen   91 --DSFYAQGRRFSAEEVLA----LTRETRSLLPDITLSVT--V--PH--ILPLDQQVQLAEDLVKAGADIIQT---EGGT  155 (242)
T ss_pred             --HHHHhcCCeecHHHHHH----HHHHHHHhCCCCceEEe--c--Cc--cccHHHHHHHHHHHHHhCCcEEEc---CCCC
Confidence              44544444456666664    45556665433332222  1  32  356778888999999999999863   3322


Q ss_pred             C--H--HHHHHHHHH----HHHhcCC-ceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          304 T--P--GTVVPMLEA----VMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       304 ~--P--~~v~~li~~----l~~~~p~-~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +  |  ..+-.+|+.    |...+-. ..+.+-.-.--|+.--.+=.|+.+||..|
T Consensus       156 ss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGV  211 (242)
T PF04481_consen  156 SSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGV  211 (242)
T ss_pred             CCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCccc
Confidence            2  2  112222221    1111100 00111122456888888889999999865

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.71  E-value=2.5  Score=41.97  Aligned_cols=180  Identities=11%  Similarity=0.094  Sum_probs=109.7

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++.+++|+.|.++|+..+=.+++-   +|.....+  .++-++.+++   -.++.+..=..+...++.+.+. ++.+.
T Consensus        39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k  115 (266)
T PRK13398         39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQ  115 (266)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEE
Confidence            78889999999999999999888652   22111111  1222333332   2334433333466778888777 88888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      |......          -       .++++++-..|.+|.  ++.      ....+++++...++.+...|-..+.|+..
T Consensus       116 Iga~~~~----------n-------~~LL~~~a~~gkPV~--lk~------G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r  170 (266)
T PRK13398        116 IGSRNMQ----------N-------FELLKEVGKTKKPIL--LKR------GMSATLEEWLYAAEYIMSEGNENVVLCER  170 (266)
T ss_pred             ECccccc----------C-------HHHHHHHhcCCCcEE--EeC------CCCCCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            8643211          0       144555667788876  331      11237888999999999999887777774


Q ss_pred             CC---CCCHHHHHH--HHHHHHHhcCCceEEE-EeCCC--cCcHHHHHHHHHHcCCC--EEeecc
Q 014369          300 IG---VGTPGTVVP--MLEAVMAVVPVEKLAV-HLHDT--YGQSLPNILISLQMGIS--TVDCSV  354 (426)
Q Consensus       300 ~G---~~~P~~v~~--li~~l~~~~p~~~i~~-H~HNd--~GlA~ANaLaAl~aGa~--~VD~Sv  354 (426)
                      -+   ...|....+  .+..+++.++ .+|.+ =.|-.  .-+..+-+++|+.+||+  .|+.-+
T Consensus       171 G~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~  234 (266)
T PRK13398        171 GIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP  234 (266)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence            11   123333322  3555555554 46777 44543  23457889999999999  665443

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=95.70  E-value=0.39  Score=46.44  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=104.1

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCC-hhhHHHHHHcCCCEEEEec
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPN-LKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~-~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+-++.|.+.|++.+=+    |.|+     |+++=..++++.+++. ++..+-+  ++.+ ..-++..+++|++.|.+..
T Consensus        19 ~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~   93 (223)
T PRK08745         19 GEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHP   93 (223)
T ss_pred             HHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence            34567788899997655    5554     4443334567777765 4555444  4545 4568888999999888764


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GD  298 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~D  298 (426)
                      -.                .....++++++|++|+++...+.     |.   ++.+.+.++...     +|.|-+    +.
T Consensus        94 Ea----------------~~~~~~~l~~Ir~~g~k~Glaln-----P~---T~~~~i~~~l~~-----vD~VlvMtV~PG  144 (223)
T PRK08745         94 EA----------------SRHVHRTIQLIKSHGCQAGLVLN-----PA---TPVDILDWVLPE-----LDLVLVMSVNPG  144 (223)
T ss_pred             cC----------------cccHHHHHHHHHHCCCceeEEeC-----CC---CCHHHHHHHHhh-----cCEEEEEEECCC
Confidence            32                22355778899999998875443     32   466777666542     232222    34


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -.|.-.-..+.+-|+.+++..+...+.+..==|=|....|+-...++||+.+
T Consensus       145 f~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~  196 (223)
T PRK08745        145 FGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF  196 (223)
T ss_pred             CCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence            4455554555566666666543211223333466888899999999999866

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=95.70  E-value=2.2  Score=41.22  Aligned_cols=179  Identities=18%  Similarity=0.167  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~~  213 (426)
                      ..+.++..++++...+.|+..+-+-    |.|+|      ...+.++. .++++.+.+  |   +     ....+.|++.
T Consensus        18 ~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~   86 (221)
T PRK00507         18 EATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLKG-SDVKVCTVIGFPLGANTTAVKAFEAKDAIAN   86 (221)
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhCC-CCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence            5688888889999888888776653    22221      22222221 346666554  3   2     2367888999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |+++|.+.+..+-...     -..++..+.+..+.+.+  .+..+-+-+.       ....+.+.+..+++.+.++|+|.
T Consensus        87 GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~e~i~~a~~~~~~agadf  152 (221)
T PRK00507         87 GADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTDEEKVKACEIAKEAGADF  152 (221)
T ss_pred             CCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCHHHHHHHHHHHHHhCCCE
Confidence            9999999877654311     13455566565555544  3444442222       23456788899999999999995


Q ss_pred             EEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          294 ISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       294 I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      |--.-+.  |..+|+.++.+.+.+...++     +..=--- .-...++.=+++||++|-+|
T Consensus       153 IKTsTG~~~~gat~~~v~~m~~~~~~~~~-----IKasGGI-rt~~~a~~~i~aGA~riGtS  208 (221)
T PRK00507        153 VKTSTGFSTGGATVEDVKLMRETVGPRVG-----VKASGGI-RTLEDALAMIEAGATRLGTS  208 (221)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHhCCCce-----EEeeCCc-CCHHHHHHHHHcCcceEccC
Confidence            5555543  34677777776666543333     2221111 11466777789999988554

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=95.70  E-value=0.17  Score=48.81  Aligned_cols=185  Identities=21%  Similarity=0.240  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C--------C-----hhhHHHHHHc
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P--------N-----LKGFEAAIAA  213 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~--------~-----~~di~~a~~~  213 (426)
                      +..++++...+.|++.|-+...    +      .....+.+.. .+.++.+++  |        .     ...++.|++.
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~----~------~~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~   88 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPG----Y------VKPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL   88 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGG----G------HHHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCCEEEECHH----H------HHHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence            6677888888889998887531    1      1112222221 123555544  2        1     2457889999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |++.|.+.+........     ..++.++.+.++++.|++.|+++.+- ...-+.+.....+++.+...++.+.++|+|.
T Consensus        89 GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~  162 (236)
T PF01791_consen   89 GADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADF  162 (236)
T ss_dssp             T-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred             CCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence            99999988765332111     24678899999999999999988644 3222222122335678999999999999998


Q ss_pred             EEEcCC-CCCCCHHHHHHHHHHHHHh-cCCceEEEEe-----CCCcCcHHHHHHHHHHcCCCEEe
Q 014369          294 ISLGDT-IGVGTPGTVVPMLEAVMAV-VPVEKLAVHL-----HDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       294 I~l~DT-~G~~~P~~v~~li~~l~~~-~p~~~i~~H~-----HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |-..=+ ....++.++..+-+.+... .|. ++++..     +.++=-.+.-++..+++||+++=
T Consensus       163 vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G  226 (236)
T PF01791_consen  163 VKTSTGKPVGATPEDVELMRKAVEAAPVPG-KVGVKASGGIDAEDFLRTLEDALEFIEAGADRIG  226 (236)
T ss_dssp             EEEE-SSSSCSHHHHHHHHHHHHHTHSSTT-TSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred             EEecCCccccccHHHHHHHHHHHHhcCCCc-ceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHH
Confidence            776555 2445556666655555432 231 122221     22222345667778899998653

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>TIGR03586 PseI pseudaminic acid synthase

Probab=95.67  E-value=1.1  Score=45.88  Aligned_cols=176  Identities=10%  Similarity=0.115  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCC-----CCccc-------cc--cCHHHHHHHh-----------H--hcCCCcEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVS-----PKWVP-------QL--ADARDVMEAV-----------R--DLEGARLP  198 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s-----~~~~p-------~~--~D~~~v~~~i-----------~--~~~~~~l~  198 (426)
                      +.+..+++++...++|.+.|=+..+..     +..-+       ..  ....++++.+           .  +-.++.+.
T Consensus        15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~   94 (327)
T TIGR03586        15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF   94 (327)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence            677888899999999999877754321     10000       00  0111111111           1  11233333


Q ss_pred             EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                      +-.-..+.++.+.+.|++.+-|.-.  +.              .+ ..+++++-+.|.+|.  ++       .+..+.++
T Consensus        95 stpfd~~svd~l~~~~v~~~KI~S~--~~--------------~n-~~LL~~va~~gkPvi--ls-------tG~~t~~E  148 (327)
T TIGR03586        95 SSPFDETAVDFLESLDVPAYKIASF--EI--------------TD-LPLIRYVAKTGKPII--MS-------TGIATLEE  148 (327)
T ss_pred             EccCCHHHHHHHHHcCCCEEEECCc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence            3334677888888888888777522  11              11 144555566788876  33       23468899


Q ss_pred             HHHHHHHHHhCCCCEEEE--cCCCCCCCHHHHHHH--HHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          279 VAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l--~DT~G~~~P~~v~~l--i~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +...++.+.+.|...|.|  | +.++-+|....+|  |..+++.++ .+|++=-|-   .|...+++|+.+||++|+.
T Consensus       149 i~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt---~G~~~~~aAva~GA~iIEk  221 (327)
T TIGR03586       149 IQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHT---LGILAPVAAVALGACVIEK  221 (327)
T ss_pred             HHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCC---CchHHHHHHHHcCCCEEEe
Confidence            999999999999876666  6 6666666655443  778888885 478884443   4468889999999998854

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=95.63  E-value=0.6  Score=45.31  Aligned_cols=166  Identities=14%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .-.+-++.|.++|++.+=+    |.|+     |+++=...+++.++......+-.++.+ .+-++..+++|++.|-+.+-
T Consensus        26 ~l~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~E  100 (228)
T PRK08091         26 KFNETLTTLSENQLRLLHFDIADGQFS-----PFFTVGAIAIKQFPTHCFKDVHLMVRDQFEVAKACVAAGADIVTLQVE  100 (228)
T ss_pred             HHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEccc
Confidence            3345678888999997655    5554     444333445555653111233445555 45788999999998877542


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT  299 (426)
                      .                .....+++++.|++|+.+.+-+..   .|.   ++.+.+.++...     +|.|-+    +.-
T Consensus       101 a----------------~~~~~~~l~~Ik~~g~~~kaGlal---nP~---Tp~~~i~~~l~~-----vD~VLiMtV~PGf  153 (228)
T PRK08091        101 Q----------------THDLALTIEWLAKQKTTVLIGLCL---CPE---TPISLLEPYLDQ-----IDLIQILTLDPRT  153 (228)
T ss_pred             C----------------cccHHHHHHHHHHCCCCceEEEEE---CCC---CCHHHHHHHHhh-----cCEEEEEEECCCC
Confidence            1                233557788899999944433432   232   567777766643     343322    344


Q ss_pred             CCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|...-..+.+-|+.+++..+    ...|++    |=|.-..|+-...++|||.+
T Consensus       154 gGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV----DGGI~~~ti~~l~~aGaD~~  204 (228)
T PRK08091        154 GTKAPSDLILDRVIQVENRLGNRRVEKLISI----DGSMTLELASYLKQHQIDWV  204 (228)
T ss_pred             CCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHCCCCEE
Confidence            455544556666776666543    223444    55777889999999999966

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.58  E-value=0.54  Score=46.01  Aligned_cols=192  Identities=15%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe----C
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----P  202 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~  202 (426)
                      +-=+|-|+=.|-     ..+.++..++++...+.|++.+-+-.    .+++..      .+.  ...++.+.+-.    +
T Consensus        20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~------~~~--~~~~~~~~~~~~~~~~   82 (258)
T TIGR01949        20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRG------HRG--YGKDVGLIIHLSASTS   82 (258)
T ss_pred             EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhc------ccc--cCCCCcEEEEEcCCCC
Confidence            344677765552     33666777899999999999887752    111110      000  01223322211    1


Q ss_pred             ------C---hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC
Q 014369          203 ------N---LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       203 ------~---~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r  273 (426)
                            .   ...++.+++.|++.|.+-....+        .+..+.++.+..+.+.+++.|+.+.+.+. ..|.- .+.
T Consensus        83 ~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~Gvh-~~~  152 (258)
T TIGR01949        83 LSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMMY-PRGPH-IDD  152 (258)
T ss_pred             CCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCcc-ccc
Confidence                  1   13478999999998887654221        12346678888999999999988765222 22211 122


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC--CcCcHHHHHHHHHHcCCCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN--d~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .+++.+.+.++.+.++|+|.|... .  ...++.    ++.+.+..+..-+..=+-+  |+..++.|+-.++++||+.+-
T Consensus       153 ~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~----l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia  225 (258)
T TIGR01949       153 RDPELVAHAARLGAELGADIVKTP-Y--TGDIDS----FRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVA  225 (258)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHH----HHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence            456677777788889999999975 2  123333    4444443332112233333  678889999999999999664


Q ss_pred             e
Q 014369          352 C  352 (426)
Q Consensus       352 ~  352 (426)
                      .
T Consensus       226 ~  226 (258)
T TIGR01949       226 V  226 (258)
T ss_pred             h
Confidence            3

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=95.58  E-value=0.95  Score=44.70  Aligned_cols=182  Identities=13%  Similarity=0.177  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHc--CCCEEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAA--GAKEVAI  220 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~--Gv~~V~i  220 (426)
                      +.+..++.+..+.+.|.+.|++|.-+.+.     .+.+.+...++.+   .++.++.=+++.+-+++|++.  |.+.|.=
T Consensus        23 d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINs   97 (261)
T PRK07535         23 DAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINS   97 (261)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence            56677888999999999999999754331     1123344444432   355555556777888899988  8775443


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEcC
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EISLGD  298 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~l~D  298 (426)
                         +|-.           +  ++..+++..++++|..+.+-.+..-|-|.......+++.+.++.+.++|++  .|.+==
T Consensus        98 ---Is~~-----------~--~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDP  161 (261)
T PRK07535         98 ---VSAE-----------G--EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDP  161 (261)
T ss_pred             ---CCCC-----------C--ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeC
Confidence               2210           0  112355667788888776322211122211001135666777888899984  665544


Q ss_pred             CCCC--CCHH---HHHHHHHHHHHhcCCceEEEEeCCC-cCcHH------HHHHHHHHcCCC
Q 014369          299 TIGV--GTPG---TVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL------PNILISLQMGIS  348 (426)
Q Consensus       299 T~G~--~~P~---~v~~li~~l~~~~p~~~i~~H~HNd-~GlA~------ANaLaAl~aGa~  348 (426)
                      -+|.  ..+.   ++-+.++.+++.+|+.++.+=.+|- +|++-      +-...|+++|.+
T Consensus       162 gi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~  223 (261)
T PRK07535        162 LVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMD  223 (261)
T ss_pred             CCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCC
Confidence            4442  1233   3455566777777765666655553 66632      222345666655

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=95.57  E-value=1.3  Score=42.39  Aligned_cols=154  Identities=19%  Similarity=0.203  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cccc-----------cCHHHHHHHhHhc-C-CCcEE--EEe-CC---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VPQL-----------ADARDVMEAVRDL-E-GARLP--VLT-PN---  203 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p~~-----------~D~~~v~~~i~~~-~-~~~l~--~l~-~~---  203 (426)
                      -+.++.+.|.+.|++-|.+.||+|.|.+...  .|..           ...+.+++.++.. + ++.+.  .+. .|   
T Consensus        29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl  108 (268)
T KOG4175|consen   29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPIL  108 (268)
T ss_pred             CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHH
Confidence            3567789999999999999999998754211  1211           1234455555532 2 23332  233 23   


Q ss_pred             ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          .+-++.|..+|+..+.|..-            ..|    ....+-.+||++|+....         ...+++++.=
T Consensus       109 ~yG~e~~iq~ak~aGanGfiivDl------------PpE----Ea~~~Rne~~k~gislvp---------LvaPsTtdeR  163 (268)
T KOG4175|consen  109 RYGVENYIQVAKNAGANGFIIVDL------------PPE----EAETLRNEARKHGISLVP---------LVAPSTTDER  163 (268)
T ss_pred             hhhHHHHHHHHHhcCCCceEeccC------------ChH----HHHHHHHHHHhcCceEEE---------eeCCCChHHH
Confidence                23467788899987666521            123    334566789999987653         1223344443


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCC-----HHHHHHHHHHHHHhcCCceEEE
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGT-----PGTVVPMLEAVMAVVPVEKLAV  326 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~-----P~~v~~li~~l~~~~p~~~i~~  326 (426)
                      .++.-.+.+   .-||+.-.+|..-     -+.+..|+..+|+...+.|+.+
T Consensus       164 mell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV  212 (268)
T KOG4175|consen  164 MELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV  212 (268)
T ss_pred             HHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence            333322222   3556666555532     2556788888888776666665

>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]

Probab=95.55  E-value=0.83  Score=44.03  Aligned_cols=203  Identities=21%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             HHHHHHhCCCCeEEEecCCCCCcccc-ccCHHHHHHHhHhcCCCcEEEEeC--------Ch-----------hhHHHHHH
Q 014369          153 LIRRLVSSGLPVVEATSFVSPKWVPQ-LADARDVMEAVRDLEGARLPVLTP--------NL-----------KGFEAAIA  212 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~~s~~~~p~-~~D~~~v~~~i~~~~~~~l~~l~~--------~~-----------~di~~a~~  212 (426)
                      +++...++|++.||+....   ..++ ..+.+++.+.++. -++++..+.+        ..           +-++.|.+
T Consensus        20 ~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~   95 (274)
T COG1082          20 ILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKE   95 (274)
T ss_pred             HHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHH
Confidence            4555677889999997511   1111 1124455554442 3444444321        11           13456777


Q ss_pred             cCCCEEEEeccCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          213 AGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .|++.|.++.+........ ......+...+.+.++.+.|++.|+.+.......   +.....++   ....+.+.+.+-
T Consensus        96 lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~---~~~~~~~~---~~~~~~~~~~~~  169 (274)
T COG1082          96 LGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH---PGNVVETG---ADALDLLREVDS  169 (274)
T ss_pred             cCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC---ccceeecC---HHHHHHHHhcCC
Confidence            8999888776543322110 0112235678888899999999987766321000   11111111   223444445543


Q ss_pred             C-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcc
Q 014369          292 F-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNV  370 (426)
Q Consensus       292 d-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa  370 (426)
                      + .-.+-|+.=...-..  +.+..+++..+. -..+|+||..+-...    .+..+           +. ...+| -|..
T Consensus       170 ~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~----~~~~~-----------~~-~~~pG-~G~i  229 (274)
T COG1082         170 PNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD----IVNFL-----------GQ-HLPPG-DGDI  229 (274)
T ss_pred             CceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc----ccCCC-----------cc-eeCCC-CCCc
Confidence            3 445667654433323  556666666664 488999999987655    11111           22 33455 6899


Q ss_pred             cHHHHHHHHHhCCCC
Q 014369          371 ATEDVVYMLSGLGVE  385 (426)
Q Consensus       371 ~lEevv~~L~~lG~~  385 (426)
                      +..++...|+..|++
T Consensus       230 d~~~i~~~L~~~gy~  244 (274)
T COG1082         230 DFKAIFSALREAGYD  244 (274)
T ss_pred             CHHHHHHHHHHcCCC
Confidence            999999999988776

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.54  E-value=0.28  Score=47.00  Aligned_cols=153  Identities=27%  Similarity=0.365  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      -+.++.+.++++|.+.|++.||+++-+ |       ++.+..+.++ ..+++-+.+-+ -+.++++.+.++|.+.+.-. 
T Consensus        22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP-   92 (211)
T COG0800          22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP-   92 (211)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC-
Confidence            478899999999999999999999733 2       3445555554 56655555433 47889999999998865322 


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTI  300 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~DT~  300 (426)
                      ..+                   .+++++|+++|+.+.         |  +-.+|.++.    .+.++|++.+-+  +.++
T Consensus        93 ~~~-------------------~ev~~~a~~~~ip~~---------P--G~~TptEi~----~Ale~G~~~lK~FPa~~~  138 (211)
T COG0800          93 GLN-------------------PEVAKAANRYGIPYI---------P--GVATPTEIM----AALELGASALKFFPAEVV  138 (211)
T ss_pred             CCC-------------------HHHHHHHHhCCCccc---------C--CCCCHHHHH----HHHHcChhheeecCcccc
Confidence            111                   378889999999765         2  233455543    355799987765  3333


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |-      ..+++.+.-=+|.    +-+=-+=|-...|.-.=+.+|+..|
T Consensus       139 Gg------~~~~ka~~gP~~~----v~~~pTGGVs~~N~~~yla~gv~av  178 (211)
T COG0800         139 GG------PAMLKALAGPFPQ----VRFCPTGGVSLDNAADYLAAGVVAV  178 (211)
T ss_pred             Cc------HHHHHHHcCCCCC----CeEeecCCCCHHHHHHHHhCCceEE
Confidence            22      2345554443444    3344567788889998888985544

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=95.52  E-value=0.44  Score=50.65  Aligned_cols=155  Identities=13%  Similarity=0.163  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHhC--CCCeEEEec--C-CCCCccccccCHHHHHHHhHhcCCCcEEEEeC---ChhhHHHHHHcCCC
Q 014369          145 VPTGVKVELIRRLVSS--GLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAK  216 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~--Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---~~~di~~a~~~Gv~  216 (426)
                      .+.+..++=++.+.+.  |++.|-++=  | ..++      ...++++.++.. +..+.+.++   +.+-++...++|..
T Consensus       227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~------~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~  299 (472)
T TIGR03471       227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKP------RAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLR  299 (472)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHH------HHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCC
Confidence            4666666655555553  788776641  1 1111      123344444332 344443333   34567888899999


Q ss_pred             EEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          217 EVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       217 ~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      .|.+.+ +.|+..++ .+++..  ..+++.++++.++++|+.+.++++  +|.|..   +++.+.+..+.+.+.+.+.+.
T Consensus       300 ~v~iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~  371 (472)
T TIGR03471       300 LLLVGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQ  371 (472)
T ss_pred             EEEEcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCcee
Confidence            988887 44454333 455432  345667888999999998887666  677765   467788888888888887765


Q ss_pred             EcCCCCCCCHHHHHHHHHHHHHh
Q 014369          296 LGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       296 l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      +    ..++|.---.+.+.+++.
T Consensus       372 ~----~~l~P~PGT~l~~~~~~~  390 (472)
T TIGR03471       372 V----SLAAPYPGTELYDQAKQN  390 (472)
T ss_pred             e----eecccCCCcHHHHHHHHC
Confidence            3    456666555666665543

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=95.52  E-value=3  Score=43.11  Aligned_cols=197  Identities=17%  Similarity=0.121  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---------ccccc---CHHHHHHHhHhc---CCCcEEEEe---CCh-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---------VPQLA---DARDVMEAVRDL---EGARLPVLT---PNL-  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---------~p~~~---D~~~v~~~i~~~---~~~~l~~l~---~~~-  204 (426)
                      .+..++...++++-.+.+-+.|=-.++..-++         +|+.+   ....+...++..   ..+.+....   .+. 
T Consensus        34 v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~  113 (357)
T TIGR01520        34 CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL  113 (357)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence            57888889999999999999876654422111         12110   111123333321   234444333   344 


Q ss_pred             -hhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-
Q 014369          205 -KGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-  271 (426)
Q Consensus       205 -~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-  271 (426)
                       +.++.++++|           ...|.+=.|  .        .+.+++++..++++++|+..|+.|++-|-.+-|.++. 
T Consensus       114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS--~--------lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~  183 (357)
T TIGR01520       114 LPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS--E--------EPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGV  183 (357)
T ss_pred             hHHHHHHHHhhhhhhhhcCCCCCceEEeeCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCc
Confidence             4578888886           666655333  2        4678999999999999999999999888776455542 


Q ss_pred             ---------CCCCHHHHHHHHHHHH-hCCCCEE--EEcCCCCCCC---HHHHHHHHHHH----HHhcCC-----ceEEEE
Q 014369          272 ---------GAIPPSKVAYVAKELH-DMGCFEI--SLGDTIGVGT---PGTVVPMLEAV----MAVVPV-----EKLAVH  327 (426)
Q Consensus       272 ---------~r~~~~~l~~~~~~l~-~~Gad~I--~l~DT~G~~~---P~~v~~li~~l----~~~~p~-----~~i~~H  327 (426)
                               ..++|+...+++++.. ..|+|.+  .+.-.=|.-.   |.=-.++++.+    ++..+.     .+|.+|
T Consensus       184 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLH  263 (357)
T TIGR01520       184 DNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFH  263 (357)
T ss_pred             ccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEe
Confidence                     1478998888887653 3478854  4444444432   32233445555    344332     126665


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          328 LHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       328 ~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +  --|+.--....|+..|+.-|+.
T Consensus       264 G--gSGi~~e~i~kai~~GI~KINi  286 (357)
T TIGR01520       264 G--GSGSTKQEIKEALSYGVVKMNI  286 (357)
T ss_pred             C--CCCCCHHHHHHHHHCCCeEEEe
Confidence            5  5677788999999999987743

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=95.51  E-value=1.9  Score=41.39  Aligned_cols=170  Identities=16%  Similarity=0.158  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEeccC-C
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFASA-S  225 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~~-S  225 (426)
                      -.+.++.+.+.|++.|.+-..- ..++|+..-..+..+.++..++..+.  .++.+ ...++.+.++|++.|.+...- .
T Consensus        22 l~~~l~~~~~~g~~~ihld~~d-~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~  100 (229)
T PLN02334         22 LAEEAKRVLDAGADWLHVDVMD-GHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAS  100 (229)
T ss_pred             HHHHHHHHHHcCCCEEEEeccc-CCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecccc
Confidence            3567788889999999884211 11234332122455666665554433  33444 345788899999999554331 1


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEE----EcCCC
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEIS----LGDTI  300 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~----l~DT~  300 (426)
                                     -+...+.++.+++.|+.+...+.     |.   ++.+    .++.+.+.| +|.|.    .+.+.
T Consensus       101 ---------------~d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~----~~~~~~~~~~~Dyi~~~~v~pg~~  153 (229)
T PLN02334        101 ---------------TIHLHRLIQQIKSAGMKAGVVLN-----PG---TPVE----AVEPVVEKGLVDMVLVMSVEPGFG  153 (229)
T ss_pred             ---------------chhHHHHHHHHHHCCCeEEEEEC-----CC---CCHH----HHHHHHhccCCCEEEEEEEecCCC
Confidence                           12245677788888987653221     11   2223    233444553 88773    23344


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      |...+....+.++.+++..+..+|.+    +=|.-..|+-..+++||+.|=
T Consensus       154 ~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv  200 (229)
T PLN02334        154 GQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV  200 (229)
T ss_pred             ccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence            54455666667788887755444544    336677899999999999873

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.48  E-value=0.74  Score=47.31  Aligned_cols=84  Identities=14%  Similarity=0.031  Sum_probs=61.5

Q ss_pred             hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC----CCCHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG----AIPPSKVA  280 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~----r~~~~~l~  280 (426)
                      +++.|++.|++-|.+.+.. |+.         ..+.++.+.++++.|++.|+.+.+ .++.-|.....    .++++.++
T Consensus       151 sVedAlrLGAdAV~~tvy~Gs~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia  220 (348)
T PRK09250        151 SVEDALRLGAVAVGATIYFGSEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLTG  220 (348)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHHH
Confidence            5899999999966554432 331         236789999999999999999764 44444433222    23488999


Q ss_pred             HHHHHHHhCCCCEEEEcCC
Q 014369          281 YVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT  299 (426)
                      ..++.+.++|||.|-..=|
T Consensus       221 ~AaRiaaELGADIVKv~yp  239 (348)
T PRK09250        221 QANHLAATIGADIIKQKLP  239 (348)
T ss_pred             HHHHHHHHHcCCEEEecCC
Confidence            9999999999998877655

>PRK13753 dihydropteroate synthase; Provisional

Probab=95.47  E-value=2.9  Score=41.81  Aligned_cols=192  Identities=16%  Similarity=0.124  Sum_probs=108.9

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHH---HHhHhcC--CCcEEEEeCChhhH
Q 014369          134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVM---EAVRDLE--GARLPVLTPNLKGF  207 (426)
Q Consensus       134 LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~---~~i~~~~--~~~l~~l~~~~~di  207 (426)
                      +=||++    .++.+..++-+..+.+.|.+.|++|.-++ |..-| ....+|+.   ..++.+.  +..+++=+...+-+
T Consensus        15 FsDGg~----~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~-vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va   89 (279)
T PRK13753         15 FFDESR----RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP-VSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQ   89 (279)
T ss_pred             CCCCCC----CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHH
Confidence            345544    46888989999999999999999997654 32111 11122333   3334332  34444444567778


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC----CCCC--C-CH----
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP----VEGA--I-PP----  276 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p----d~~r--~-~~----  276 (426)
                      +.|+++|++.|.=.-..++                  .++.+.+.+.+..+.  +|+.-+.+    ....  + +.    
T Consensus        90 ~~al~aGadiINDVsg~~d------------------~~~~~vva~~~~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev  149 (279)
T PRK13753         90 RYALKRGVGYLNDIQGFPD------------------PALYPDIAEADCRLV--VMHSAQRDGIATRTGHLRPEDALDEI  149 (279)
T ss_pred             HHHHHcCCCEEEeCCCCCc------------------hHHHHHHHHcCCCEE--EEecCCCCCCCCcccCCCcchHHHHH
Confidence            9999999997654322211                  123333445676655  55543211    1111  1 11    


Q ss_pred             -HHHHHHHHHHHhCCC--CEEEEcCCCCCC---CHHHHHHHHHHHHHh-----cCCc-----------eEEEEeCCCcCc
Q 014369          277 -SKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAV-----VPVE-----------KLAVHLHDTYGQ  334 (426)
Q Consensus       277 -~~l~~~~~~l~~~Ga--d~I~l~DT~G~~---~P~~v~~li~~l~~~-----~p~~-----------~i~~H~HNd~Gl  334 (426)
                       +++.+-++.+.++|+  +.|.|==-+|.+   ++++-.++++.+.+-     +|..           -++...++...-
T Consensus       150 ~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~  229 (279)
T PRK13753        150 VRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPA  229 (279)
T ss_pred             HHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcCCChhhhhHh
Confidence             344555667888998  478887778863   677777777765432     3431           011123333333


Q ss_pred             HHHHHHHHHHcCCCEE
Q 014369          335 SLPNILISLQMGISTV  350 (426)
Q Consensus       335 A~ANaLaAl~aGa~~V  350 (426)
                      .+|.+..|+..||++|
T Consensus       230 T~a~~~~a~~~Ga~iv  245 (279)
T PRK13753        230 SLAAELHAIGNGADYV  245 (279)
T ss_pred             HHHHHHHHHHcCCCEE
Confidence            4455566777888877

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.45  E-value=1.7  Score=44.78  Aligned_cols=220  Identities=13%  Similarity=0.126  Sum_probs=130.4

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++.+++|+.|.++|+..+--|+|-   +|.....+.  ++-++.+++   -.++.+..=.....+++.+.+. +|.+.
T Consensus       113 s~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lq  189 (352)
T PRK13396        113 NEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQ  189 (352)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEE
Confidence            67888999999999999999888763   232221121  333344432   2345544444577888888887 88888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |....          +      .+ .++++++-+.|.+|-  +..       +. .+++++...++.+.+.|...|.|+.
T Consensus       190 Iga~~----------~------~n-~~LL~~va~t~kPVl--lk~-------G~~~t~ee~~~A~e~i~~~Gn~~viL~e  243 (352)
T PRK13396        190 VGARN----------M------QN-FSLLKKVGAQDKPVL--LKR-------GMAATIDEWLMAAEYILAAGNPNVILCE  243 (352)
T ss_pred             ECccc----------c------cC-HHHHHHHHccCCeEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence            86321          1      11 245666667788775  332       23 3789999999999999998888887


Q ss_pred             C-----CCCCCHHHH--HHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCC
Q 014369          299 T-----IGVGTPGTV--VPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGA  366 (426)
Q Consensus       299 T-----~G~~~P~~v--~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~gr  366 (426)
                      .     . ...|...  -..+..+++.+. .++-+   |.=-...+-.+-+++|+.+||+  .|+.=..        |.+
T Consensus       244 rG~rtf~-s~y~~~~~dl~ai~~lk~~~~-lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~--------pd~  313 (352)
T PRK13396        244 RGIRTFD-RQYTRNTLDLSVIPVLRSLTH-LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN--------PAK  313 (352)
T ss_pred             cCCccCc-CCCCCCCcCHHHHHHHHHhhC-CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC--------ccc
Confidence            6     3 1223222  122555666543 34533   4334444456899999999999  7765443        112


Q ss_pred             CCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcc
Q 014369          367 SGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI  414 (426)
Q Consensus       367 aGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pi  414 (426)
                      +.  +  +=.   ..+   +.-++.+|++-.+.+.+.+|...++..+.
T Consensus       314 Al--s--D~~---qsl---~p~~~~~l~~~i~~i~~~~g~~~~~~~~~  351 (352)
T PRK13396        314 AL--S--DGP---QSL---TPDRFDRLMQELAVIGKTVGRWPQPAAAL  351 (352)
T ss_pred             CC--C--hhh---hcC---CHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            21  0  100   001   12244555555566666777766655443

>PRK08227 autoinducer 2 aldolase; Validated

Probab=95.44  E-value=0.75  Score=45.63  Aligned_cols=124  Identities=20%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +++.|++.|++-|.+.+.. |+.         -.+.|+++.++++.|.+.|+++-+ + +.-|...  ..+++.++..++
T Consensus        99 sVeeAvrlGAdAV~~~v~~Gs~~---------E~~~l~~l~~v~~ea~~~G~Plla-~-~prG~~~--~~~~~~ia~aaR  165 (264)
T PRK08227         99 DMEDAVRLNACAVAAQVFIGSEY---------EHQSIKNIIQLVDAGLRYGMPVMA-V-TAVGKDM--VRDARYFSLATR  165 (264)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCcEEE-E-ecCCCCc--CchHHHHHHHHH
Confidence            6899999999966554432 331         247899999999999999999875 2 2233221  235678888999


Q ss_pred             HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEe-CC-CcCcHHHHHHHHHHcCCCEEee
Q 014369          285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HD-TYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~-HN-d~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      ...++|||.|-..=|     .+.+.+.+    +.-|. |+-+=+ .- +.--.+.-+-.|+++||..|..
T Consensus       166 iaaELGADiVK~~y~-----~~~f~~vv----~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~  225 (264)
T PRK08227        166 IAAEMGAQIIKTYYV-----EEGFERIT----AGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM  225 (264)
T ss_pred             HHHHHcCCEEecCCC-----HHHHHHHH----HcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence            999999999886654     13444444    34443 344422 11 2222678888899999998753

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=95.44  E-value=2  Score=44.51  Aligned_cols=178  Identities=19%  Similarity=0.196  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhH---hcCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++-+++|+.|.+.|+..+=-|+|-   +|.....+.  .+-++.++   .-.++.+.+=.....+++.+.+. ++.+.
T Consensus       130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~--~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk  206 (360)
T PRK12595        130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG--VEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ  206 (360)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCC--HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE
Confidence            67888999999999999988888663   222111111  12222222   22344444444577889999888 89888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |.-.  +        +      .+ .++++++-+.|.+|.  ++       .+. .+++++...++.+.+.|...|.|+.
T Consensus       207 I~s~--~--------~------~n-~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e  260 (360)
T PRK12595        207 IGAR--N--------M------QN-FELLKAAGRVNKPVL--LK-------RGLSATIEEFIYAAEYIMSQGNGQIILCE  260 (360)
T ss_pred             ECcc--c--------c------cC-HHHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence            8632  1        1      11 256667777898876  33       133 5789999999999999998899987


Q ss_pred             -CC-CC--CCHHHH-HHHHHHHHHhcCCceEEE-EeCCCcC---cHHHHHHHHHHcCCC--EEeecc
Q 014369          299 -TI-GV--GTPGTV-VPMLEAVMAVVPVEKLAV-HLHDTYG---QSLPNILISLQMGIS--TVDCSV  354 (426)
Q Consensus       299 -T~-G~--~~P~~v-~~li~~l~~~~p~~~i~~-H~HNd~G---lA~ANaLaAl~aGa~--~VD~Sv  354 (426)
                       .+ .+  ..++.+ -..|..+++.++ .|+++ =.|- .|   +..+-+++|+.+||+  .|+.=.
T Consensus       261 rg~s~yp~~~~~~ldl~~i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        261 RGIRTYEKATRNTLDISAVPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             CccCCCCCCCCCCcCHHHHHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence             22 11  112211 223556676665 35777 3443 45   667799999999996  665444

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=95.37  E-value=1.1  Score=45.19  Aligned_cols=165  Identities=17%  Similarity=0.119  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCC-cEEEEeCC---hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPN---LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~-~l~~l~~~---~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|+..|-++. -.    |-+ .|..++++.++..++. .+...+..   .+.++...++|++.|
T Consensus        42 ~ls~eei~~~i~~~~~~gv~~V~ltG-GE----Pll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v  116 (334)
T TIGR02666        42 LLTFEEIERLVRAFVGLGVRKVRLTG-GE----PLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRV  116 (334)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEC-cc----ccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeE
Confidence            57999999999999999999888753 12    222 2456666666665666 44443422   245677778999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EIS  295 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~  295 (426)
                      .|.+...+......+.. ....++++.+.++.+++.|+. +.+++...   +   ..+.+.+.++++.+.+.|++  -|.
T Consensus       117 ~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~---~---g~n~~ei~~l~~~~~~~gv~~~~ie  189 (334)
T TIGR02666       117 NVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVM---R---GVNDDEIVDLAEFAKERGVTLRFIE  189 (334)
T ss_pred             EEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---C---CCCHHHHHHHHHHHHhcCCeEEEEe
Confidence            98875432211112221 112466667788889999997 76544321   1   13557888899989999976  333


Q ss_pred             EcCCCCCCC--H---HHHHHHHHHHHHhcC
Q 014369          296 LGDTIGVGT--P---GTVVPMLEAVMAVVP  320 (426)
Q Consensus       296 l~DT~G~~~--P---~~v~~li~~l~~~~p  320 (426)
                      +....+...  .   ....++++.+.+.++
T Consensus       190 ~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~  219 (334)
T TIGR02666       190 LMPLGEGNGWREKKFVSADEILERLEQAFG  219 (334)
T ss_pred             ccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence            444433211  1   124566677766654

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=95.37  E-value=1.2  Score=43.58  Aligned_cols=200  Identities=15%  Similarity=0.035  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-c-cc--cCHHHHHHHhHhcCCCcEEEEeC-----------C------
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-P-QL--ADARDVMEAVRDLEGARLPVLTP-----------N------  203 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p-~~--~D~~~v~~~i~~~~~~~l~~l~~-----------~------  203 (426)
                      ++.++   .++.+.++|++.||+.......+. + ..  .+.+++.+.++. .++++.+++.           +      
T Consensus        21 ~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~   96 (283)
T PRK13209         21 ECWLE---KLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQ   96 (283)
T ss_pred             CCHHH---HHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHH
Confidence            45554   455567999999999753211100 0 00  122333333332 3555544321           1      


Q ss_pred             -----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          204 -----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       204 -----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                           .+.++.|.+.|++.|.+.-....  .........+...+.+.+++++|+++|+.+.  +...   +...-.+++.
T Consensus        97 ~~~~~~~~i~~a~~lG~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~  169 (283)
T PRK13209         97 ALEIMRKAIQLAQDLGIRVIQLAGYDVY--YEQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISK  169 (283)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCcccc--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHH
Confidence                 02346677789998876421100  0000001123446667788899999997665  2221   1122235555


Q ss_pred             HHHHHHHHHhCCCCEEEE-cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          279 VAYVAKELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l-~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      +.++++   +.+-+.+.+ -|+.=...-.  ......++. ...--..+|.+|..+-           +-+.     ..+
T Consensus       170 ~~~ll~---~v~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~~-----------~~~~-----~~~  227 (283)
T PRK13209        170 ALGYAH---YLNSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTKPG-----------VFKN-----VPF  227 (283)
T ss_pred             HHHHHH---HhCCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCCCC-----------CCce-----eCC
Confidence            555554   444444433 3653221110  012223332 3222478899987531           1111     123


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          358 GGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       358 GecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      |        .|..+.+.++.+|+..|++
T Consensus       228 G--------~G~id~~~i~~~L~~~gy~  247 (283)
T PRK13209        228 G--------EGVVDFERCFKTLKQSGYC  247 (283)
T ss_pred             C--------CCccCHHHHHHHHHHcCCC
Confidence            3        5889999999999987765

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.32  E-value=0.88  Score=44.91  Aligned_cols=179  Identities=14%  Similarity=0.125  Sum_probs=109.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++-+++|+.|.+.|+...-.+.+-   +|.....+  .++-++.+++   -.++.+.+=..+...++.+.+. ++.+.
T Consensus        37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~--g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk  113 (260)
T TIGR01361        37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGL--GEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ  113 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCceecCCCCCcccccc--HHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE
Confidence            67788999999999998855444331   22111111  1233333332   2344444444567888888887 88887


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~-~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |...  +.              .+ .++++++.+.|.+|.  ++.       +.. +++++...++.+.+.|.+.|.|+.
T Consensus       114 I~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~t~~e~~~Ave~i~~~Gn~~i~l~~  167 (260)
T TIGR01361       114 IGAR--NM--------------QN-FELLKEVGKQGKPVL--LKR-------GMGNTIEEWLYAAEYILSSGNGNVILCE  167 (260)
T ss_pred             ECcc--cc--------------cC-HHHHHHHhcCCCcEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence            7632  11              00 246667777898876  331       223 789999999999999998888887


Q ss_pred             C-C-CC-CCHHHHH--HHHHHHHHhcCCceEEE-EeCC--CcCcHHHHHHHHHHcCCC--EEeecc
Q 014369          299 T-I-GV-GTPGTVV--PMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQMGIS--TVDCSV  354 (426)
Q Consensus       299 T-~-G~-~~P~~v~--~li~~l~~~~p~~~i~~-H~HN--d~GlA~ANaLaAl~aGa~--~VD~Sv  354 (426)
                      . + .+ -.|....  ..+..+++.++ .+|++ =.|-  +.-+..+-+++|+.+||+  .|+.-+
T Consensus       168 rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~  232 (260)
T TIGR01361       168 RGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP  232 (260)
T ss_pred             CCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence            4 2 33 2333322  33666676654 46787 4443  223446778899999999  565443

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=95.30  E-value=1.1  Score=40.55  Aligned_cols=147  Identities=18%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCC-----eEEEecCCCCCccccccCHHHHHHHhHhcC----CCcEEEEeC----ChhhHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLP-----VVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTP----NLKGFEAA  210 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~-----~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~----~~~di~~a  210 (426)
                      ..+.++..+.++.+.+.|..     .+-++.. .|...|. ....++++.++...    ...+...+.    +.+.++..
T Consensus        29 ~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l  106 (216)
T smart00729       29 SRYLEALVREIELLAEKGEKEILVGTVFIGGG-TPTLLSP-EQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL  106 (216)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcceeEEEECCC-CCCCCCH-HHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHH
Confidence            45667777777777665543     3333221 1110010 01345666666433    233333332    35678888


Q ss_pred             HHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       211 ~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      .+.|.+.+.+.+-..+......++..  ..++++.+.++.++++| +.+...++  .|.+   ..+.+.+.++++.+.+.
T Consensus       107 ~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~v~~~~~--~g~~---~~~~~~~~~~~~~~~~~  179 (216)
T smart00729      107 KEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIKVSTDLI--VGLP---GETEEDFEETLKLLKEL  179 (216)
T ss_pred             HHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcceEEeEE--ecCC---CCCHHHHHHHHHHHHHc
Confidence            89999988887654332222223222  23477778888999999 77776555  3333   24678999999999999


Q ss_pred             CCCEEEEcCC
Q 014369          290 GCFEISLGDT  299 (426)
Q Consensus       290 Gad~I~l~DT  299 (426)
                      |++.|.+..-
T Consensus       180 ~~~~i~~~~~  189 (216)
T smart00729      180 GPDRVSIFPL  189 (216)
T ss_pred             CCCeEEeeee
Confidence            9997776443

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.4  Score=46.02  Aligned_cols=168  Identities=17%  Similarity=0.152  Sum_probs=108.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC----ChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP----NLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~----~~~di~~a~~~Gv~~V  218 (426)
                      ..+.+..+++++.+.+. ++.||+|.|.-..      .--...+.+| ..|+..+.+=.-    ..-.++.|.++|+|.+
T Consensus        12 ~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~------eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~   84 (217)
T COG0269          12 LLDLEEAIEIAEEVADY-VDIIEVGTPLIKA------EGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWV   84 (217)
T ss_pred             ccCHHHHHHHHHHhhhc-ceEEEeCcHHHHH------hhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEE
Confidence            56888999999999999 9999999864211      1123344555 346655544221    2345788999999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~-  297 (426)
                      .+...+.               .+.+..+++.|++.|..+.+.++.+        .+|+..   .+.+.++|++.+.+= 
T Consensus        85 tV~g~A~---------------~~TI~~~i~~A~~~~~~v~iDl~~~--------~~~~~~---~~~l~~~gvd~~~~H~  138 (217)
T COG0269          85 TVLGAAD---------------DATIKKAIKVAKEYGKEVQIDLIGV--------WDPEQR---AKWLKELGVDQVILHR  138 (217)
T ss_pred             EEEecCC---------------HHHHHHHHHHHHHcCCeEEEEeecC--------CCHHHH---HHHHHHhCCCEEEEEe
Confidence            8875443               3556788899999999988766532        345543   445556999887762 


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 ----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 ----DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                          -+.|.--+.+.-+-++.+...  ...+.+-    =|.-.-+.-.....|++.|
T Consensus       139 g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVa----GGI~~~~i~~~~~~~~~iv  189 (217)
T COG0269         139 GRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVA----GGITPEDIPLFKGIGADIV  189 (217)
T ss_pred             cccHhhcCCCccHHHHHHHHHhhcc--CceEEEe----cCCCHHHHHHHhcCCCCEE
Confidence                233554434444444444331  2345553    4778888888888887765

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=95.26  E-value=0.94  Score=46.44  Aligned_cols=143  Identities=10%  Similarity=0.069  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHhCC---CCeEEEecCCCCCccccccCHHHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHc
Q 014369          145 VPTGVKVELIRRLVSSG---LPVVEATSFVSPKWVPQLADARDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAA  213 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~G---v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~  213 (426)
                      +......+|...+...|   ++.|=+|-. .|-.++. .+..++++.+++ .   ++..+.+-+ |   +.+.++...++
T Consensus        32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~~-~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~  109 (360)
T TIGR00539        32 YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLSV-EAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGA  109 (360)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCCH-HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence            34555556665555556   556655421 1111110 223445555542 1   345566544 3   34667888899


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      |+.+|.+.+..-+...-..+|+.  ...+++.++++.+++.|+. +.+.++  +|.|..   +.+.+.+.++.+.++|++
T Consensus       110 Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~~  182 (360)
T TIGR00539       110 GINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKEELKLAKELPIN  182 (360)
T ss_pred             CCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHHHHHHHHccCCC
Confidence            99999998753332222334542  2245566788899999996 665555  666654   567888888889999998


Q ss_pred             EEEE
Q 014369          293 EISL  296 (426)
Q Consensus       293 ~I~l  296 (426)
                      .|.+
T Consensus       183 ~is~  186 (360)
T TIGR00539       183 HLSA  186 (360)
T ss_pred             EEEe
Confidence            8865

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.17  E-value=2.8  Score=39.22  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.+.+.|++.||+..-..        +..++++.++.. +.+...+ ..-..++++.|+++|++.|++..-
T Consensus        22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~--------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~   93 (187)
T PRK07455         22 DLELGLQMAEAVAAGGMRLIEITWNSD--------QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV   93 (187)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCCC--------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence            788889999999999999999986321        345666666643 4343332 223448999999999999977532


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                      .                    .+.++.++.+++...      .|     -.+++.+.+    +.++|+|.|.+==|.-..
T Consensus        94 ~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e~~~----A~~~Gadyv~~Fpt~~~~  138 (187)
T PRK07455         94 D--------------------PELIEAAVAQDIPII------PG-----ALTPTEIVT----AWQAGASCVKVFPVQAVG  138 (187)
T ss_pred             C--------------------HHHHHHHHHcCCCEE------cC-----cCCHHHHHH----HHHCCCCEEEECcCCccc
Confidence            1                    144456667776532      33     234555433    446999998873331111


Q ss_pred             CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       304 ~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                          =.++++.++..+|.+++-.=    =|....|+-.-+++|++.|
T Consensus       139 ----G~~~l~~~~~~~~~ipvvai----GGI~~~n~~~~l~aGa~~v  177 (187)
T PRK07455        139 ----GADYIKSLQGPLGHIPLIPT----GGVTLENAQAFIQAGAIAV  177 (187)
T ss_pred             ----CHHHHHHHHhhCCCCcEEEe----CCCCHHHHHHHHHCCCeEE
Confidence                14557777776654444332    2666799999999999976

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=95.16  E-value=0.87  Score=45.33  Aligned_cols=160  Identities=21%  Similarity=0.253  Sum_probs=102.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCC---ccccccCHHHHHHHhHh-cCCCcEEEEeCChh----hHHHHHHc
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK---WVPQLADARDVMEAVRD-LEGARLPVLTPNLK----GFEAAIAA  213 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~---~~p~~~D~~~v~~~i~~-~~~~~l~~l~~~~~----di~~a~~~  213 (426)
                      ...++.++-..+|+...++|++++-+++-...+   +..+  .+.++++.+++ .|++++-+|+|...    .++..+++
T Consensus        94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~  171 (306)
T COG0320          94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADA  171 (306)
T ss_pred             CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhc
Confidence            346788899999999999999999999865422   1111  24567777774 57899999998643    45566667


Q ss_pred             CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          214 GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       214 Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      +.+.+.=-+ .+--++.+...+-+.+.+|    ++.+++|+.+  +..-..||...|      -+.+++.+..+.|.+.|
T Consensus       172 ~pdV~nHNvETVprL~~~VRp~A~Y~~SL----~~L~~~k~~~P~i~TKSgiMlGLG------Et~~Ev~e~m~DLr~~g  241 (306)
T COG0320         172 GPDVFNHNVETVPRLYPRVRPGATYERSL----SLLERAKELGPDIPTKSGLMVGLG------ETDEEVIEVMDDLRSAG  241 (306)
T ss_pred             CcchhhcccccchhcccccCCCCcHHHHH----HHHHHHHHhCCCcccccceeeecC------CcHHHHHHHHHHHHHcC
Confidence            765332111 0001111122345566666    5666888888  444445664332      24688999999999999


Q ss_pred             CCEEEEcC----------CCCCCCHHHHHHHHH
Q 014369          291 CFEISLGD----------TIGVGTPGTVVPMLE  313 (426)
Q Consensus       291 ad~I~l~D----------T~G~~~P~~v~~li~  313 (426)
                      +|.+.|.-          -.-+-+|+++..+=+
T Consensus       242 vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~  274 (306)
T COG0320         242 VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEE  274 (306)
T ss_pred             CCEEEeccccCCccccCCceeccCHHHHHHHHH
Confidence            99998753          223456666665433

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=95.15  E-value=0.49  Score=45.78  Aligned_cols=111  Identities=25%  Similarity=0.253  Sum_probs=80.5

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhcCCc-----eEEEEeCCCcC
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVE-----KLAVHLHDTYG  333 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~p~~-----~i~~H~HNd~G  333 (426)
                      ++.+.|+|.+.-+..-.+.+ ++.+.+.|||+|-+.=..|.+.   .+.|.+-|+.+++..++.     .|+.-.=+|--
T Consensus        63 v~tVigFP~G~~~t~~K~~E-a~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee  141 (228)
T COG0274          63 VCTVIGFPLGANTTAVKAAE-AREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE  141 (228)
T ss_pred             EEEecCCCCCCChHHHHHHH-HHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence            56667889765443334444 6788899999999888887654   567788888888877641     25555555555


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          334 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      . ...+..++++||+.|=+|-+.         .+|++.+|++..+.+..|
T Consensus       142 ~-~~A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~vg  181 (228)
T COG0274         142 K-RKACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKETVG  181 (228)
T ss_pred             H-HHHHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHHhc
Confidence            5 667778899999999988753         357899999988887533

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=95.11  E-value=0.6  Score=50.15  Aligned_cols=156  Identities=12%  Similarity=0.040  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHH-HhCCCCeEEEec--C-CCCCccccccCHHHHHHHhHhc--CCCcEEEEeC------ChhhHHHHHH
Q 014369          145 VPTGVKVELIRRL-VSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDL--EGARLPVLTP------NLKGFEAAIA  212 (426)
Q Consensus       145 f~~~~ki~I~~~L-~~~Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~------~~~di~~a~~  212 (426)
                      -+.+..++=++.| .+.|+..|.+.-  | .+++      ...++++.+.+.  .+..+.+-++      +.+-++...+
T Consensus       222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~------~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~  295 (497)
T TIGR02026       222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRK------KFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR  295 (497)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHH------HHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH
Confidence            3555555544544 568998876531  1 1211      123444444322  1333333333      2234677788


Q ss_pred             cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          213 AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       213 ~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      +|+..|.+.+ +.|+..+ ..+++..  ..+++.++++.++++|+.+.++++  +|.|..   +.+.+.+.++.+.+++.
T Consensus       296 aG~~~v~iGiES~~~~~L-~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~  367 (497)
T TIGR02026       296 AGLVHISLGTEAAAQATL-DHFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDP  367 (497)
T ss_pred             hCCcEEEEccccCCHHHH-HHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCC
Confidence            9999888876 4454333 3355432  245567888999999999876665  677765   46888888888999999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      +.+.+    ..++|.---.+.+.+++.
T Consensus       368 ~~~~~----~~~tP~PGT~l~~~~~~~  390 (497)
T TIGR02026       368 DQANW----LMYTPWPFTSLFGELSDR  390 (497)
T ss_pred             CceEE----EEecCCCCcHHHHHHHhh
Confidence            88776    367776666677666654

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=95.11  E-value=0.75  Score=46.00  Aligned_cols=137  Identities=15%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             hhhHHHHHHcCCCEEEEec-cCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFA-SASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      .-....+.+.|.+-+.+.- +++...-.--++. |.++.++.++++++.   -.++|.+.+-..|       -++..++.
T Consensus        28 ~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGf-------G~~~nvar   97 (289)
T COG2513          28 AGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGF-------GEALNVAR   97 (289)
T ss_pred             HHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCC-------CcHHHHHH
Confidence            3445566778887766641 1111111111222 578888888776654   4777776665433       24788999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCC-----------CCHHHHHHHHHHHHHhcCCceEEE------EeCCCcCcHHHHHHHHHH
Q 014369          282 VAKELHDMGCFEISLGDTIGV-----------GTPGTVVPMLEAVMAVVPVEKLAV------HLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~-----------~~P~~v~~li~~l~~~~p~~~i~~------H~HNd~GlA~ANaLaAl~  344 (426)
                      .++.+.++|+.-|.|-|.++-           ..+.++.+.|++.++..++..+.+      ..+.-+.-++.-+.+=++
T Consensus        98 tV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e  177 (289)
T COG2513          98 TVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE  177 (289)
T ss_pred             HHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999984           566778888888888765333332      444447778888999999


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      ||||.|
T Consensus       178 AGAD~i  183 (289)
T COG2513         178 AGADAI  183 (289)
T ss_pred             cCCcEE
Confidence            999977

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.98  E-value=2.4  Score=41.79  Aligned_cols=163  Identities=15%  Similarity=0.199  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V~i  220 (426)
                      .+..+-.++++...+.|.+-|-+=  ..+++..  .+. +.+..+++..  .++++..    ....++.+.++|+|.|.+
T Consensus        67 ~~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~-~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlL  139 (260)
T PRK00278         67 REDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSL-EYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILL  139 (260)
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCH-HHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEE
Confidence            344456789999999999988551  1222211  122 3344455332  2344433    334789999999999999


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC-C
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD-T  299 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D-T  299 (426)
                      ....=+              .+.+.+++++++++|+.+.+.+.           +.+.+    +++.++|++.|.+.. .
T Consensus       140 i~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~----~~A~~~gadiIgin~rd  190 (260)
T PRK00278        140 IVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL----ERALKLGAPLIGINNRN  190 (260)
T ss_pred             EeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH----HHHHHcCCCEEEECCCC
Confidence            865411              14677899999999998764321           23333    446688999999864 1


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCc-e-EEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVE-K-LAV-HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~-~-i~~-H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .....|.  .+.+..+.+.+|.. + |.. ..+     ...++-.+.++|++.|
T Consensus       191 l~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v  237 (260)
T PRK00278        191 LKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV  237 (260)
T ss_pred             cccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence            1122222  22344444555531 2 222 222     2567778889999876

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=94.87  E-value=0.26  Score=52.71  Aligned_cols=78  Identities=22%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +...+.++.|.+.|++.|.| |+.= ..|..+.++|+.+++.+|+.++-+    +.+.-...+..++++||+.|++.+.|
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~  297 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP  297 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence            34557788899999999887 7776 788999999999999998766666    66777788899999999999976665


Q ss_pred             CCCC
Q 014369          357 LGGC  360 (426)
Q Consensus       357 lGec  360 (426)
                      =.-|
T Consensus       298 Gs~~  301 (475)
T TIGR01303       298 GAMC  301 (475)
T ss_pred             Cccc
Confidence            3333

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=94.87  E-value=1.2  Score=45.87  Aligned_cols=137  Identities=12%  Similarity=0.062  Sum_probs=87.4

Q ss_pred             hHHHHHHcCCCEEEEec--cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE-EeeecCCCCCC-----CCHH
Q 014369          206 GFEAAIAAGAKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGA-----IPPS  277 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~--~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v-~~~fg~pd~~r-----~~~~  277 (426)
                      .++.+++.|+|-|-+.+  ...+.. +     -.++.++.+.++.+.|++.|+++.+-+ ++..+..+...     .+|+
T Consensus       111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~  184 (340)
T PRK12858        111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE  184 (340)
T ss_pred             cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence            36889999999665544  322110 0     023667889999999999999987542 33322222211     5789


Q ss_pred             HHHHHHHHHHh--CCCCEEEEcCCC------C------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH
Q 014369          278 KVAYVAKELHD--MGCFEISLGDTI------G------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL  343 (426)
Q Consensus       278 ~l~~~~~~l~~--~Gad~I~l~DT~------G------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl  343 (426)
                      .+...++.+.+  +|+|.+-+.=+.      |      +.+-.+..+.++.+.+..|...|-+=.--+...-+...-.|+
T Consensus       185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~  264 (340)
T PRK12858        185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSPELFRRTLEFAC  264 (340)
T ss_pred             HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            99999999995  999988885442      1      114455556666666665542233333335555677777899


Q ss_pred             HcCCC
Q 014369          344 QMGIS  348 (426)
Q Consensus       344 ~aGa~  348 (426)
                      ++|++
T Consensus       265 ~aGa~  269 (340)
T PRK12858        265 EAGAD  269 (340)
T ss_pred             HcCCC
Confidence            99993

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=94.78  E-value=0.91  Score=44.31  Aligned_cols=180  Identities=17%  Similarity=0.174  Sum_probs=106.6

Q ss_pred             HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEeC------C-h----hhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP------N-L----KGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~------~-~----~di~~a~~~Gv~~  217 (426)
                      ++.+.++|++.|=.+++.  ...+.|.  +-+..++++.++++. .+.+++++-      + .    +.++...++|+.-
T Consensus        22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ag  101 (238)
T PF13714_consen   22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAG  101 (238)
T ss_dssp             HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SE
T ss_pred             HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcE
Confidence            566778899998886541  1123443  346678888877653 245555542      2 2    3567778899999


Q ss_pred             EEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          218 VAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       218 V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      |+|-.. .+  | ..+-=.+.+++.++++.+.+..++.++-+.+-- .++..   .....++..+-+++..++|||.|.+
T Consensus       102 i~IEDq~~~--~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART-Da~~~---~~~~~deaI~R~~aY~eAGAD~ifi  174 (238)
T PF13714_consen  102 INIEDQRCG--H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIART-DAFLR---AEEGLDEAIERAKAYAEAGADMIFI  174 (238)
T ss_dssp             EEEESBSTT--T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE-CHHCH---HHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             EEeeccccC--C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEec-ccccc---CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            999977 22  2 222223899999999988888888885443211 11100   0123355666677778899999987


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .   |..+.+++.++.+.+    + .|+-+..+  .+.  -+.-.--++|+++|-.
T Consensus       175 ~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~  218 (238)
T PF13714_consen  175 P---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSY  218 (238)
T ss_dssp             T---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEE
T ss_pred             C---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEE
Confidence            5   446777777666666    2 35666664  333  4444555789988843

...

>PRK09234 fbiC FO synthase; Reviewed

Probab=94.78  E-value=4.3  Score=46.60  Aligned_cols=226  Identities=12%  Similarity=0.045  Sum_probs=131.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--------cccc---cCHHHHHHHhHhcC---CCc--EEEEeCChh
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--------VPQL---ADARDVMEAVRDLE---GAR--LPVLTPNLK  205 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--------~p~~---~D~~~v~~~i~~~~---~~~--l~~l~~~~~  205 (426)
                      ...++.++.+++++...+.|+..+=+.+...|+.        +..+   .+.+.+.+.++.++   +..  +..-.-+.+
T Consensus        99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~  178 (843)
T PRK09234         99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWS  178 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHH
Confidence            4578999999999999999999977766544431        1110   12344455554332   111  111123566


Q ss_pred             hHHHHHHcCCCEEEEeccC-ChHH-Hhh---h---cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          206 GFEAAIAAGAKEVAIFASA-SEAF-SKS---N---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~-Sd~~-~~~---~---~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      .++...++|++ ..+..-. ++.+ .+.   .   .+++.+   ++ .++++.|+++|+++...+++  |-   +. +++
T Consensus       179 E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~---~R-L~ti~~A~~lGi~~tsG~L~--Gi---GE-t~e  247 (843)
T PRK09234        179 ELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPA---VR-LRVLEDAGRLSVPFTTGILI--GI---GE-TLA  247 (843)
T ss_pred             HHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHH---HH-HHHHHHHHHcCCCccceEEE--EC---CC-CHH
Confidence            78888888876 3333322 2322 111   1   122333   24 48899999999998877774  42   22 345


Q ss_pred             HHHHHHHHHHhC-----CCCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHH
Q 014369          278 KVAYVAKELHDM-----GCFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILI  341 (426)
Q Consensus       278 ~l~~~~~~l~~~-----Gad~I~l------~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLa  341 (426)
                      +.++.+..+.++     |+..|.+      ++|-    ...+|.+..++|+..|-.+|.. +.+-.- |..|.  .-+..
T Consensus       248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~--~~~~~  324 (843)
T PRK09234        248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSG--DECAA  324 (843)
T ss_pred             HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCH--HHHHH
Confidence            555544455444     5655543      2452    2478899999998888877532 222222 44454  34567


Q ss_pred             HHHcCCCEEeecc--cCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          342 SLQMGISTVDCSV--AGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       342 Al~aGa~~VD~Sv--~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      ++.+||+=+.+++  .+--.   +|.+. .+.++++....+..|+.
T Consensus       325 ~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~  366 (843)
T PRK09234        325 LLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT  366 (843)
T ss_pred             HHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence            8999999998883  33100   01112 25789999999876654

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=94.77  E-value=2.6  Score=42.19  Aligned_cols=132  Identities=14%  Similarity=0.050  Sum_probs=80.2

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ..++.+++.|+..+.+.+....   ....+.+.++.++.+.+.++.+ ++.|+++...++..      ...+++.+.+..
T Consensus        77 ~~~~e~~~~Gvt~~E~~~~p~~---~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~  147 (325)
T cd01320          77 EYLEDAAADGVVYAEIRFSPQL---HTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETL  147 (325)
T ss_pred             HHHHHHHHcCCEEEEEEeCchh---hccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHH
Confidence            3456677889977666543211   1245778899998887777766 55688776544321      113456677777


Q ss_pred             HHHHhCCCCEEEEcCCC---CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCE
Q 014369          284 KELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGIST  349 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~---G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~  349 (426)
                      +.+.+.+.+.+.=.|..   ....++.+..+++..++.  +.++.+|+..+.+  ..+...|++ +|+++
T Consensus       148 ~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~  213 (325)
T cd01320         148 ELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER  213 (325)
T ss_pred             HHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence            66666554433222322   234677888888777664  3468888876643  334556776 78764

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>cd04732 HisA HisA

Probab=94.74  E-value=2.1  Score=40.63  Aligned_cols=180  Identities=14%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      ..+-+++++.+.+.|++.+-+--...-  ........++.+.+++.-+.++.+  -++..++++.+++.|++.|.+-...
T Consensus        28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~  105 (234)
T cd04732          28 SDDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA  105 (234)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence            346689999999999998888521110  000011234444444322344444  2367889999999999988654221


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCC--CCC-CCCHHHHHHHHHHHHhCCCCEEEEcCC-
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCP--VEG-AIPPSKVAYVAKELHDMGCFEISLGDT-  299 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~p--d~~-r~~~~~l~~~~~~l~~~Gad~I~l~DT-  299 (426)
                         .          +..+.+.++   +++.|. .+.+.+-.-.+..  ... ..+...+.++++.+.+.|++.|.+-|. 
T Consensus       106 ---l----------~dp~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~  169 (234)
T cd04732         106 ---V----------KNPELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS  169 (234)
T ss_pred             ---H----------hChHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence               0          112222333   334443 3333322100000  000 012234557788889999999988775 


Q ss_pred             -CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH-HHHHHHHcCCCEE
Q 014369          300 -IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTV  350 (426)
Q Consensus       300 -~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A-NaLaAl~aGa~~V  350 (426)
                       .|.... .-.++++.+++..+. |+..-+    |.... -...++..||+.|
T Consensus       170 ~~g~~~g-~~~~~i~~i~~~~~i-pvi~~G----Gi~~~~di~~~~~~Ga~gv  216 (234)
T cd04732         170 RDGTLSG-PNFELYKELAAATGI-PVIASG----GVSSLDDIKALKELGVAGV  216 (234)
T ss_pred             CCCccCC-CCHHHHHHHHHhcCC-CEEEec----CCCCHHHHHHHHHCCCCEE
Confidence             455444 225677888776653 455433    22222 2455566788865

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK06852 aldolase; Validated

Probab=94.73  E-value=0.54  Score=47.53  Aligned_cols=131  Identities=15%  Similarity=0.039  Sum_probs=88.2

Q ss_pred             hHHHHHHcC------CCEE--EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          206 GFEAAIAAG------AKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       206 di~~a~~~G------v~~V--~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      .++.|++.|      ++-|  ++++. |+.         -.+.|+++.++++.|+++|+.+.+ .++..|.......+|+
T Consensus       120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~  188 (304)
T PRK06852        120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH  188 (304)
T ss_pred             cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence            478899988      6544  44443 331         247899999999999999999764 4555554434446889


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeC-C-CcCcHHHHHHHHHH-cCCCEEe
Q 014369          278 KVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLH-D-TYGQSLPNILISLQ-MGISTVD  351 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~H-N-d~GlA~ANaLaAl~-aGa~~VD  351 (426)
                      .++..++...++|||.|-..=|.  |-..|+.+.+.++..   -|. ++-+=+= - +.--.+..+-.|++ +|+..|.
T Consensus       189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~v-pVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~  263 (304)
T PRK06852        189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GRT-KVVCAGGSSTDPEEFLKQLYEQIHISGASGNA  263 (304)
T ss_pred             HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CCC-cEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence            99999999999999998877652  224678888766542   132 3333221 1 11225777778888 9998764

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.73  E-value=3.9  Score=40.28  Aligned_cols=82  Identities=18%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++.+.+.|++.|.+-++.-..    +.+.+..+..+.+.++++.+|+. ++.+.+-+..        -.+++++.++++.
T Consensus       117 a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~~  184 (289)
T cd02810         117 ARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAKA  184 (289)
T ss_pred             HHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHHH
Confidence            455667799988876543221    11111111223444555555554 5555543331        2456788999999


Q ss_pred             HHhCCCCEEEEcCCC
Q 014369          286 LHDMGCFEISLGDTI  300 (426)
Q Consensus       286 l~~~Gad~I~l~DT~  300 (426)
                      +.++|+|.|.+..|.
T Consensus       185 l~~~Gad~i~~~~~~  199 (289)
T cd02810         185 AERAGADGLTAINTI  199 (289)
T ss_pred             HHHcCCCEEEEEccc
Confidence            999999999987664

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=94.73  E-value=0.69  Score=47.10  Aligned_cols=135  Identities=16%  Similarity=0.140  Sum_probs=86.4

Q ss_pred             HHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|...        +|+..  +...+|-|.++=.....++++.+|+. |  +.|.+-++..-..+  .-.
T Consensus       156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~--~g~  233 (338)
T cd04733         156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR--GGF  233 (338)
T ss_pred             HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC--CCC
Confidence            4667899999988654        35553  33457888888888888888888875 4  45555444211111  225


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---------------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHH
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGT---------------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  339 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---------------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANa  339 (426)
                      +++...++++.+.++|+|.|.+..  |...               +....++.+.++++++..-+..-..+    ....+
T Consensus       234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~----t~~~a  307 (338)
T cd04733         234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFR----TRAAM  307 (338)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCC----CHHHH
Confidence            788899999999999999998643  2110               11124667788887753223333222    34677


Q ss_pred             HHHHHcC-CCEE
Q 014369          340 LISLQMG-ISTV  350 (426)
Q Consensus       340 LaAl~aG-a~~V  350 (426)
                      ..+++.| ||.|
T Consensus       308 ~~~l~~g~aD~V  319 (338)
T cd04733         308 EQALASGAVDGI  319 (338)
T ss_pred             HHHHHcCCCCee
Confidence            8888887 6765

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=94.73  E-value=0.62  Score=46.68  Aligned_cols=107  Identities=9%  Similarity=0.021  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--------------
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--------------  300 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--------------  300 (426)
                      .+.++.++.++.++...   .++|.+.       .+.+ -++..+.+.++.+.++|+..|.|-|.+              
T Consensus        61 ~~~~e~~~~~~~I~~a~---~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~  129 (285)
T TIGR02320        61 ASWTQRLDVVEFMFDVT---TKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ  129 (285)
T ss_pred             CCHHHHHHHHHHHHhhc---CCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence            36778888776665443   5666532       2455 689999999999999999999999975              


Q ss_pred             CCCCHHHHHHHHHHHHHh-c-CCceEEEE----e-CCCcCcHHHHHHHHHHcCCCEEee
Q 014369          301 GVGTPGTVVPMLEAVMAV-V-PVEKLAVH----L-HDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~-~-p~~~i~~H----~-HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+..+++..+.|++.++. . ++..|-..    . ...+--++.-+.++.++|||.|=.
T Consensus       130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv  188 (285)
T TIGR02320       130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI  188 (285)
T ss_pred             cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence            356778888888888775 2 33334344    1 123446788888999999997754

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>cd00423 Pterin_binding Pterin binding enzymes

Probab=94.72  E-value=3.4  Score=40.45  Aligned_cols=134  Identities=22%  Similarity=0.190  Sum_probs=77.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccc--cCHHHHHHHhHhcC---CCcEEEEeCChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQL--ADARDVMEAVRDLE---GARLPVLTPNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~--~D~~~v~~~i~~~~---~~~l~~l~~~~~di~~a~~~Gv~~  217 (426)
                      ..+.+..++.++.+.+.|.+.|++|.-++ |..-|.-  ...+.+...++.+.   +..++.=+.+.+-+++|++.|++.
T Consensus        20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~i   99 (258)
T cd00423          20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADI   99 (258)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCE
Confidence            46889999999999999999999996543 3221111  11122334444332   444544457788899999999765


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCC----HHHHHHHHHHHH
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIP----PSKVAYVAKELH  287 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~----~~~l~~~~~~l~  287 (426)
                      |.=.-...               .+  .++++.++++|..+.  ++..-+.|..      ....    .+++.+.++.+.
T Consensus       100 INdis~~~---------------~~--~~~~~l~~~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  160 (258)
T cd00423         100 INDVSGGR---------------GD--PEMAPLAAEYGAPVV--LMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT  160 (258)
T ss_pred             EEeCCCCC---------------CC--hHHHHHHHHcCCCEE--EECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence            44321110               00  345567778887765  3332111110      0001    367777788888


Q ss_pred             hCCC--CEEEE
Q 014369          288 DMGC--FEISL  296 (426)
Q Consensus       288 ~~Ga--d~I~l  296 (426)
                      ++|+  +.|.+
T Consensus       161 ~~Gi~~~~Iil  171 (258)
T cd00423         161 EAGIPPEDIIL  171 (258)
T ss_pred             HcCCCHHHEEE
Confidence            9995  35544

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>cd01335 Radical_SAM Radical SAM superfamily

Probab=94.69  E-value=1.7  Score=38.55  Aligned_cols=133  Identities=12%  Similarity=0.117  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeC----ChhhHHHHHHcCCCEEEEec
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTP----NLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~----~~~di~~a~~~Gv~~V~i~~  222 (426)
                      ++..+++......|+..+-++.. .|-..|   ...++++.++.. ++..+...+.    +.+.++...++|+..|.+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~i~~~gg-ep~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~l  106 (204)
T cd01335          31 EEILDIVLEAKERGVEVVILTGG-EPLLYP---ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSL  106 (204)
T ss_pred             HHHHHHHHHHHhcCceEEEEeCC-cCCccH---hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEc
Confidence            56677777778888888777532 111011   234445555433 4666666552    35788888999999999998


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      ...+......++ .....+++..+.++.+++.|+.+.+.+.  .|.+..   +.+.+.+..+.+.+.+
T Consensus       107 e~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~---~~~~~~~~~~~l~~~~  168 (204)
T cd01335         107 DSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDE---DEEDDLEELELLAEFR  168 (204)
T ss_pred             ccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCC---hhHHHHHHHHHHHhhc
Confidence            655544444332 1122345566777788888998886666  444433   2466667777777665

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

>PRK13347 coproporphyrinogen III oxidase; Provisional

Probab=94.67  E-value=1.4  Score=46.75  Aligned_cols=110  Identities=14%  Similarity=0.087  Sum_probs=74.5

Q ss_pred             HHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369          182 ARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  253 (426)
Q Consensus       182 ~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~  253 (426)
                      ..++++.+++.    ++..+.+-+ |   +.+.++...++|+.+|.|.+..-+......+|+.  ...+.+.++++.+++
T Consensus       122 l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr~  199 (453)
T PRK13347        122 FERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLRA  199 (453)
T ss_pred             HHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHh
Confidence            34555555432    345555544 3   3467888889999999998754443344445553  234556678889999


Q ss_pred             cCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          254 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       254 ~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      .|+. |.+.++  +|.|..   +.+.+.+.++.+.++|++.|.+-.
T Consensus       200 ~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~p~~i~~y~  240 (453)
T PRK13347        200 AGFESINFDLI--YGLPHQ---TVESFRETLDKVIALSPDRIAVFG  240 (453)
T ss_pred             cCCCcEEEeEE--EeCCCC---CHHHHHHHHHHHHhcCCCEEEEec
Confidence            9986 666666  666754   578888889999999999887754

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.67  E-value=0.69  Score=45.94  Aligned_cols=102  Identities=20%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----------cCCCCCCCHH
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----------GDTIGVGTPG  306 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----------~DT~G~~~P~  306 (426)
                      .++.++++.+.   .++.+.++.++|..         .+++.+.+.++.+.++|+|.|.|          .+..| ..|.
T Consensus        74 ~~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~  140 (296)
T cd04740          74 VEAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPE  140 (296)
T ss_pred             HHHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHH
Confidence            34555554442   23346666665542         35788999999999999998877          23333 4789


Q ss_pred             HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+.++++++++.+. .+|.+-.--+..-...-+..+.++|++.|+.
T Consensus       141 ~~~eiv~~vr~~~~-~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         141 AVAEIVKAVKKATD-VPVIVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             HHHHHHHHHHhccC-CCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            99999999999863 4677766544433444556678899998754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.65  E-value=1.2  Score=41.49  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC----CCcEEEEeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      -.+.++.+.+.|++.|++-....        +..+..+.++.+.    +..+..++.  ..++.+.+.|++.|++.....
T Consensus        23 ~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~a~~~gad~vh~~~~~~   92 (212)
T PRK00043         23 LLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRYGVPLIVN--DRVDLALAVGADGVHLGQDDL   92 (212)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHHcCCCEEecCcccC
Confidence            35677888889999999975421        1223333333221    112222332  568899999999988843210


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---CCC-C
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---DTI-G  301 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~---DT~-G  301 (426)
                      +                  ...++..+..+..+.  ++    +     .+++.    +..+.+.|+|.|.+.   +|. .
T Consensus        93 ~------------------~~~~~~~~~~~~~~g--~~----~-----~t~~e----~~~a~~~gaD~v~~~~~~~~~~~  139 (212)
T PRK00043         93 P------------------VADARALLGPDAIIG--LS----T-----HTLEE----AAAALAAGADYVGVGPIFPTPTK  139 (212)
T ss_pred             C------------------HHHHHHHcCCCCEEE--Ee----C-----CCHHH----HHHHhHcCCCEEEECCccCCCCC
Confidence            0                  122233445555444  22    1     13333    334457899999763   221 1


Q ss_pred             CCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          302 VGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       302 ~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ... |..-.+.++.+++.++..+|.+-+    |....|+-.++.+||+.|
T Consensus       140 ~~~~~~~g~~~~~~~~~~~~~~~v~a~G----GI~~~~i~~~~~~Ga~gv  185 (212)
T PRK00043        140 KDAKAPQGLEGLREIRAAVGDIPIVAIG----GITPENAPEVLEAGADGV  185 (212)
T ss_pred             CCCCCCCCHHHHHHHHHhcCCCCEEEEC----CcCHHHHHHHHHcCCCEE
Confidence            111 111134455555555433455543    666689999999999987

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal

Probab=94.60  E-value=3  Score=41.37  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCC-cEEEEeCC---hhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPN---LKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~-~l~~l~~~---~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|++.|-++. ..    |-+ .+..++++.++.. +. .+...+..   .+.++...++|++.|
T Consensus        39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v  112 (302)
T TIGR02668        39 ELSPEEIERIVRVASEFGVRKVKITG-GE----PLLRKDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRV  112 (302)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEC-cc----cccccCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEE
Confidence            57889988999999999999887743 12    211 2344555555543 33 34333322   234566678899999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|.+...+......++.  ...++++.+.++.+++.|+. +.+++...   +  + .+.+.+.++++.+.+.|++
T Consensus       113 ~iSld~~~~~~~~~i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v~~---~--g-~n~~ei~~~~~~~~~~g~~  179 (302)
T TIGR02668       113 NVSLDTLDPEKYKKITG--RGALDRVIEGIESAVDAGLTPVKLNMVVL---K--G-INDNEIPDMVEFAAEGGAI  179 (302)
T ss_pred             EEEecCCCHHHhhhccC--CCcHHHHHHHHHHHHHcCCCcEEEEEEEe---C--C-CCHHHHHHHHHHHHhcCCE
Confidence            98765432211112222  34577777888889999986 66544321   2  1 3567788889888899986

This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.58  E-value=1.5  Score=43.94  Aligned_cols=138  Identities=17%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r  273 (426)
                      .++|.++|.|.|.|...-        |+.  ++...+|-+.++-.+.+.++++.+|+.   ++.+.+-++....  ..+.
T Consensus       147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~--~~~g  224 (327)
T cd02803         147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF--VPGG  224 (327)
T ss_pred             HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc--CCCC
Confidence            456778999988886542        221  333446777777777777888888774   3445544442211  1123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC----------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGT----------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL  343 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~----------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl  343 (426)
                      .+++...++++.+.++|+|.|.+......-.          +....++++.+++.++. +|..-.--+   ....+..++
T Consensus       225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi~---t~~~a~~~l  300 (327)
T cd02803         225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI-PVIAVGGIR---DPEVAEEIL  300 (327)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC-CEEEeCCCC---CHHHHHHHH
Confidence            5788999999999999999998765432211          13334677788887753 444432211   246677778


Q ss_pred             Hc-CCCEE
Q 014369          344 QM-GISTV  350 (426)
Q Consensus       344 ~a-Ga~~V  350 (426)
                      +. |||.|
T Consensus       301 ~~g~aD~V  308 (327)
T cd02803         301 AEGKADLV  308 (327)
T ss_pred             HCCCCCee
Confidence            87 67766

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.56  E-value=3  Score=39.29  Aligned_cols=141  Identities=23%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.+.+++-|-+.    +            ..++.+.   +..+..++.+.+.    .+.|... .+.+....-++.+
T Consensus        23 ~~~a~~~~~~av~v~----p------------~~v~~~~---~~l~~~~~~v~~~----~~fp~g~-~~~~~k~~eve~A   78 (203)
T cd00959          23 CDEAKEYGFAAVCVN----P------------CFVPLAR---EALKGSGVKVCTV----IGFPLGA-TTTEVKVAEAREA   78 (203)
T ss_pred             HHHHHHcCCCEEEEc----H------------HHHHHHH---HHcCCCCcEEEEE----EecCCCC-CcHHHHHHHHHHH
Confidence            346666788877764    2            1233222   2333344444433    3446554 4455555557888


Q ss_pred             HhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhcCCceEEEEeCCCcCcH----HHHHHHHHHcCCCEEeecccCCCC
Q 014369          287 HDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS----LPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA----~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      .++|||.|.+.=-.|...   -..+.+-+..+++...+.++-+ ...+-.+-    .--+..|+++|||+|=++ .|.+ 
T Consensus        79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~-  155 (203)
T cd00959          79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG-  155 (203)
T ss_pred             HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC-
Confidence            889999998877777543   3557777777777654333322 22222221    233567899999999998 5543 


Q ss_pred             CCCCCCCCCcccHHHHHHHHHh
Q 014369          360 CPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~  381 (426)
                             ++++.+|++-.+.+.
T Consensus       156 -------~~~at~~~v~~~~~~  170 (203)
T cd00959         156 -------PGGATVEDVKLMKEA  170 (203)
T ss_pred             -------CCCCCHHHHHHHHHH
Confidence                   345777776655543

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB

Probab=94.53  E-value=6.5  Score=41.80  Aligned_cols=169  Identities=17%  Similarity=0.200  Sum_probs=99.9

Q ss_pred             CCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCC---hhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPN---LKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~---~~di~~a~~~Gv~~  217 (426)
                      .++.++.++.+..+.+.  ++..|=+..+..|-.  +.....+.++.++ ..++..+..-+-.   .+.++..++.|++.
T Consensus        59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl--~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~  136 (442)
T TIGR01290        59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLA--NIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH  136 (442)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEecCCCccc--CccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence            57899999988887654  455544433222211  1111123444444 3467766544432   46688888999999


Q ss_pred             EEEeccCCh--HHHhh---------hc-CCCHHH-HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          218 VAIFASASE--AFSKS---------NI-NCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       218 V~i~~~~Sd--~~~~~---------~~-~~s~~e-~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      |.+.+...+  .|.+.         .+ |.+... .+++..+.++++++.|+.+.++....   |  + ...+.+.++++
T Consensus       137 V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlI---p--G-iND~~i~~l~~  210 (442)
T TIGR01290       137 VTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLI---P--G-INDEHLVEVSK  210 (442)
T ss_pred             EEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEee---C--C-cCHHHHHHHHH
Confidence            988876543  44321         11 222233 25667778888889999877654432   2  2 23478999999


Q ss_pred             HHHhCCCCEEEE------c--CCC------CCCCHHHHHHHHHHHHHhcC
Q 014369          285 ELHDMGCFEISL------G--DTI------GVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       285 ~l~~~Gad~I~l------~--DT~------G~~~P~~v~~li~~l~~~~p  320 (426)
                      .+.+.|++.+.|      +  ++.      -..+++++.++-+.+...+|
T Consensus       211 ~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~  260 (442)
T TIGR01290       211 QVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP  260 (442)
T ss_pred             HHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence            999999887766      2  221      12355666666665555444

This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=94.48  E-value=1.2  Score=45.65  Aligned_cols=136  Identities=21%  Similarity=0.153  Sum_probs=86.1

Q ss_pred             HHHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~  275 (426)
                      .++|.++|.|.|.|...        +|+..  +...+|-|.++=...+.++++.+|+. ++.|.+-++..-..+  +-.+
T Consensus       148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~--~G~~  225 (337)
T PRK13523        148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP--GGLT  225 (337)
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCC
Confidence            35667899999888754        24433  34456777877777777777777765 455554454321111  1246


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCCC-------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-C
Q 014369          276 PSKVAYVAKELHDMGCFEISLGDTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-I  347 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~-------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a  347 (426)
                      +++..++++.+.+.|+|.|.+.  .|..       .|.....+.+.+++.+...-+.+..-++    ...+..+++.| +
T Consensus       226 ~~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g~~  299 (337)
T PRK13523        226 VQDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNNRA  299 (337)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcCCC
Confidence            8999999999999999999883  3331       1222346677788876542244444344    35677788887 7


Q ss_pred             CEE
Q 014369          348 STV  350 (426)
Q Consensus       348 ~~V  350 (426)
                      |.|
T Consensus       300 D~V  302 (337)
T PRK13523        300 DLI  302 (337)
T ss_pred             ChH
Confidence            765

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=94.45  E-value=1.9  Score=41.98  Aligned_cols=188  Identities=19%  Similarity=0.226  Sum_probs=109.8

Q ss_pred             HHHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----C----hhhHHHHHHcCCCE
Q 014369          153 LIRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----N----LKGFEAAIAAGAKE  217 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~----~~di~~a~~~Gv~~  217 (426)
                      -++.+.++|++.|=+|...  ...+.|.  +.+.+++...++.+- .+.+.+.+  +    +    .+.+++..+.|+.-
T Consensus        21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g  100 (243)
T cd00377          21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG  100 (243)
T ss_pred             HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            4667788899999998542  1123443  245677777777542 23333333  2    2    23466777899999


Q ss_pred             EEEeccCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          218 VAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       218 V~i~~~~Sd~~~---~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |.|-....+...   ..+.-.+.++..++++.+++.+++. .+.|.+.. .++   ..+....++..+-+++..++|||.
T Consensus       101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART-Da~---~~~~~~~~eai~Ra~ay~~AGAD~  176 (243)
T cd00377         101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART-DAL---LAGEEGLDEAIERAKAYAEAGADG  176 (243)
T ss_pred             EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc-Cch---hccCCCHHHHHHHHHHHHHcCCCE
Confidence            999665443211   1112348899999988777777664 22222110 001   011145788888999999999999


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      |.+.   |..+++++..+.+.    .+ .|+-+.......  .-+.-.--+.|+++|-...
T Consensus       177 v~v~---~~~~~~~~~~~~~~----~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~  227 (243)
T cd00377         177 IFVE---GLKDPEEIRAFAEA----PD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGL  227 (243)
T ss_pred             EEeC---CCCCHHHHHHHHhc----CC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEECh
Confidence            9985   33366666555444    44 366666544432  1123333466888875443

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK14057 epimerase; Provisional

Probab=94.45  E-value=1.2  Score=43.97  Aligned_cols=172  Identities=12%  Similarity=0.133  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .-.+-++.|.+.|++.+=+    |.|+     |++.=..++++.++......+-.++.+ ..-++..+++|++.|-+..-
T Consensus        33 ~L~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~E  107 (254)
T PRK14057         33 ALHRYLQQLEALNQPLLHLDLMDGQFC-----PQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCITLQAE  107 (254)
T ss_pred             HHHHHHHHHHHCCCCEEEEeccCCccC-----CccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeec
Confidence            3345677888899997655    5554     444333455556654111233445555 45678889999998887643


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-------EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-------VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-------v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      +                .....++++++|++|++       +.+-|.  + +|.   ++++.+.++...     +|.|-+
T Consensus       108 a----------------~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--l-nP~---Tp~e~i~~~l~~-----vD~VLv  160 (254)
T PRK14057        108 G----------------DIHLHHTLSWLGQQTVPVIGGEMPVIRGIS--L-CPA---TPLDVIIPILSD-----VEVIQL  160 (254)
T ss_pred             c----------------ccCHHHHHHHHHHcCCCcccccccceeEEE--E-CCC---CCHHHHHHHHHh-----CCEEEE
Confidence            2                22345677888888874       222233  2 232   567777766642     343332


Q ss_pred             ----cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          297 ----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       297 ----~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                          +.-.|...-..+.+-|+.+++..+...+.+-.-=|=|....|+-...++||+++=+
T Consensus       161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~  220 (254)
T PRK14057        161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVS  220 (254)
T ss_pred             EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence                34445555555666666666654321122223336688888999999999997633

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=94.43  E-value=4.1  Score=37.70  Aligned_cols=172  Identities=19%  Similarity=0.183  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcE--EEEeCC-hhhHHHHHHcCCCEEEEe
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~~-~~di~~a~~~Gv~~V~i~  221 (426)
                      ++...-.+.++.+.++|++.|+++.--.+ ..|...-..+..+.++...+..+  ..++.+ .+.++.+.++|++.|.+.
T Consensus         9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh   87 (211)
T cd00429           9 ADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH   87 (211)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence            44555567889999999999999632110 11211111233444543222333  233444 345888899999998776


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----  297 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----  297 (426)
                      ...++                ...+.++.+++.|+.+...+.     +.   ++.+.+.++.    + ++|.|.+.    
T Consensus        88 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~~~~~~~~----~-~~d~i~~~~~~~  138 (211)
T cd00429          88 AEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPVEVLEPYL----D-EVDLVLVMSVNP  138 (211)
T ss_pred             ccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCHHHHHHHH----h-hCCEEEEEEECC
Confidence            43322                223557778888887763221     11   2233333332    2 25666442    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -+.|...+....+.++.+++..+    ..++.+=    -|....|+-.++++|++.|
T Consensus       139 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i  191 (211)
T cd00429         139 GFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL  191 (211)
T ss_pred             CCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence            22343445566667777776653    2345443    3788899999999999976

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.40  E-value=4  Score=40.51  Aligned_cols=126  Identities=20%  Similarity=0.215  Sum_probs=71.1

Q ss_pred             HHHHHcCCCEEEEeccCChHHHh--hhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~--~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +++.++|+|.|-+-++.-. ...  ..++.+    .+.+.++++.+|+. ++.|.+-+.     |     +.+.+.++++
T Consensus       109 ~~~~~~G~d~iElN~~cP~-~~~~g~~~~~~----~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~~a~  173 (296)
T cd04740         109 EKLADAGADAIELNISCPN-VKGGGMAFGTD----PEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVEIAR  173 (296)
T ss_pred             HHHHHcCCCEEEEECCCCC-CCCCcccccCC----HHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHHHHH
Confidence            4455679998777654211 110  112223    34555666677766 677664432     2     2246778899


Q ss_pred             HHHhCCCCEEEEcCCCCCCC-------------------H---HHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHH
Q 014369          285 ELHDMGCFEISLGDTIGVGT-------------------P---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILI  341 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~-------------------P---~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLa  341 (426)
                      .+.++|+|.|.+-+|.+...                   |   ....++++.+++.++. +|..    .=|. -...+..
T Consensus       174 ~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~i-pii~----~GGI~~~~da~~  248 (296)
T cd04740         174 AAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEI-PIIG----VGGIASGEDALE  248 (296)
T ss_pred             HHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCC-CEEE----ECCCCCHHHHHH
Confidence            99999999998876643211                   0   1123566777765532 2222    1122 2367777


Q ss_pred             HHHcCCCEEeec
Q 014369          342 SLQMGISTVDCS  353 (426)
Q Consensus       342 Al~aGa~~VD~S  353 (426)
                      ++++||+.|..+
T Consensus       249 ~l~~GAd~V~ig  260 (296)
T cd04740         249 FLMAGASAVQVG  260 (296)
T ss_pred             HHHcCCCEEEEc
Confidence            778888876543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme

Probab=94.40  E-value=2.3  Score=44.38  Aligned_cols=143  Identities=14%  Similarity=0.191  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec---CC-CCCccccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS---FV-SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~---~~-s~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~~  213 (426)
                      ..+.+..++-++.|.+.|++.|-+..   .. ..++ +......++++.+...++.   ++..+-|.   .+-++...++
T Consensus       166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~-~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~  244 (414)
T TIGR01579       166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDL-KNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE  244 (414)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCC-CCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence            56889989988999999999887642   11 1110 0012345666666655543   22222232   2345666666


Q ss_pred             C--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--cCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       214 G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~--~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      |  ...+++.+ +.|+.-++ .+|+..  ..+.+.++++.+++  .|+.+.++++  +|.|..   +++.+.+.++.+.+
T Consensus       245 ~~~~~~l~lglESgs~~vLk-~m~R~~--~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~  316 (414)
T TIGR01579       245 KRLCPHLHLSLQSGSDRVLK-RMRRKY--TRDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKE  316 (414)
T ss_pred             CccCCCeEECCCcCChHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence            6  57788876 45554443 355432  34567788888888  8888887776  677865   46777778888888


Q ss_pred             CCCCEEE
Q 014369          289 MGCFEIS  295 (426)
Q Consensus       289 ~Gad~I~  295 (426)
                      .+.+.+.
T Consensus       317 ~~~~~~~  323 (414)
T TIGR01579       317 IEFSHLH  323 (414)
T ss_pred             CCCCEEE
Confidence            8887665

This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=94.37  E-value=0.36  Score=47.13  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-CCCCCCCHHHHHHHHHHHHhCC
Q 014369          212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      ..-+|.+-+...++-.+        .++   .+++.++.|+++|+.|.      +|. ..+.......+.++.+.+.++|
T Consensus        22 g~yID~lKfg~Gt~~l~--------~~~---~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lG   84 (237)
T TIGR03849        22 GDYITFVKFGWGTSALI--------DRD---IVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELG   84 (237)
T ss_pred             hhheeeEEecCceEeec--------cHH---HHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcC
Confidence            34566666655444322        122   25688899999999876      221 1111122356667778899999


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEeCC-----CcCcHHHHHHHHHHcCCCEE--eecc----cCC
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAV-V-PVEKLAVHLHD-----TYGQSLPNILISLQMGISTV--DCSV----AGL  357 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~-~-p~~~i~~H~HN-----d~GlA~ANaLaAl~aGa~~V--D~Sv----~Gl  357 (426)
                      .+.|-|.|..--+..++-.++|+.+++. + .-..++.....     +...-+-.+-..++|||+.|  ++-=    -|+
T Consensus        85 f~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi  164 (237)
T TIGR03849        85 FEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGL  164 (237)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcce
Confidence            9999999999999999999999999965 2 11124444331     22233445556799999954  6522    255


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          358 GGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       358 GecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      =+      ..|+.-...+...+++++
T Consensus       165 ~~------~~g~~r~d~v~~i~~~l~  184 (237)
T TIGR03849       165 FD------EKGNVKEDELDVLAENVD  184 (237)
T ss_pred             eC------CCCCCchHHHHHHHhhCC
Confidence            55      577777776655555433

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=94.34  E-value=2.2  Score=41.69  Aligned_cols=124  Identities=12%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      ..++++.+.+.|++.+-|.-.  |+              .. ..+++++.+.|.+|.  ++       .|..+.+++.+.
T Consensus        78 d~~s~d~l~~~~~~~~KIaS~--dl--------------~n-~~lL~~~A~tgkPvI--lS-------TG~stl~EI~~A  131 (241)
T PF03102_consen   78 DEESVDFLEELGVPAYKIASG--DL--------------TN-LPLLEYIAKTGKPVI--LS-------TGMSTLEEIERA  131 (241)
T ss_dssp             SHHHHHHHHHHT-SEEEE-GG--GT--------------T--HHHHHHHHTT-S-EE--EE--------TT--HHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEeccc--cc--------------cC-HHHHHHHHHhCCcEE--EE-------CCCCCHHHHHHH
Confidence            456666777778888888622  11              11 255667777888876  33       356778888888


Q ss_pred             HHHHHhCCCCEEEEcC-CCCCCCHHHHH--HHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccC
Q 014369          283 AKELHDMGCFEISLGD-TIGVGTPGTVV--PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAG  356 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~D-T~G~~~P~~v~--~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~G  356 (426)
                      ++.+.+.|...|.|-= +.++=+|.+=.  ..|..|++.+| .++|+=-|.. |  +.-.++|+..||..|  |.|+.-
T Consensus       132 v~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTldr  206 (241)
T PF03102_consen  132 VEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLDR  206 (241)
T ss_dssp             HHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-T
T ss_pred             HHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECCC
Confidence            8888677765444443 44554554433  34899999999 5899999987 4  556789999999998  667653

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.33  E-value=1.3  Score=45.37  Aligned_cols=138  Identities=20%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCCCC-CC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPVE-GA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~pd~-~r  273 (426)
                      .++|.++|.|.|.|...-        |+.  ++...+|-+.++=...+.++++.+|+. |. .|.+-++..-..+.. .-
T Consensus       158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~  237 (338)
T cd02933         158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS  237 (338)
T ss_pred             HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence            356678999988886432        222  233346667777677777888777764 44 344333321000000 12


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      .++++..++++.+.+.|+|.|.+..  +... .+....++++.+++.++..-+.....+     ...+..+++.| ||.|
T Consensus       238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D~V  311 (338)
T cd02933         238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKADLV  311 (338)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCCEE
Confidence            4678899999999999999998832  2221 134456778888888754335555543     67788999887 8876

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=94.32  E-value=0.094  Score=47.93  Aligned_cols=169  Identities=16%  Similarity=0.162  Sum_probs=84.4

Q ss_pred             HHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-----C---------------h----hhHHHH
Q 014369          155 RRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-----N---------------L----KGFEAA  210 (426)
Q Consensus       155 ~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----~---------------~----~di~~a  210 (426)
                      +.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++..     .               .    +.++.|
T Consensus         2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a   80 (213)
T PF01261_consen    2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA   80 (213)
T ss_dssp             HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence            5678899999999864321110000123333333332 3566554431     1               1    235667


Q ss_pred             HHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       211 ~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      ...|++.+.+....-+...........+...+.+..++++|++.|+.+.  +....+.......+.+.+.+++   .+.+
T Consensus        81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~l---~~~~  155 (213)
T PF01261_consen   81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA--LENHPGPFSETPFSVEEIYRLL---EEVD  155 (213)
T ss_dssp             HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE--EE-SSSSSSSEESSHHHHHHHH---HHHT
T ss_pred             HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE--EecccCccccchhhHHHHHHHH---hhcC
Confidence            7789999998855100000000011245566677788899999997765  3221111111112224544444   4455


Q ss_pred             CCEE-EEcCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcC
Q 014369          291 CFEI-SLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYG  333 (426)
Q Consensus       291 ad~I-~l~DT~G~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~G  333 (426)
                      -+.+ ..-||.=... .....+.++.+...    -..+|++|..+
T Consensus       156 ~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~  196 (213)
T PF01261_consen  156 SPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG  196 (213)
T ss_dssp             TTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred             CCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence            3323 3345532221 24555666666554    37899999888

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>PRK08446 coproporphyrinogen III oxidase; Provisional

Probab=94.27  E-value=1.9  Score=44.19  Aligned_cols=106  Identities=10%  Similarity=0.075  Sum_probs=70.9

Q ss_pred             HHHHHHhHhc--CCCcEEEEe-CC---hhhHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 014369          183 RDVMEAVRDL--EGARLPVLT-PN---LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  255 (426)
Q Consensus       183 ~~v~~~i~~~--~~~~l~~l~-~~---~~di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G  255 (426)
                      +++++.++..  .+..+++-+ |.   .+.++...++|+.+|.|.+. .++. .-..+|+.  ...+++.++++.+++.|
T Consensus        71 ~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~-~L~~lgR~--~~~~~~~~ai~~lr~~g  147 (350)
T PRK08446         71 EPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNED-KLKFLGRI--HSQKQIIKAIENAKKAG  147 (350)
T ss_pred             HHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHH-HHHHcCCC--CCHHHHHHHHHHHHHcC
Confidence            4555555532  345565544 42   46678888999999999874 4443 33344552  22455667888999999


Q ss_pred             Cc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          256 IP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       256 ~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      +. |.+.++  +|.|..   +.+.+.+.++.+.+.|++.|.+
T Consensus       148 ~~~v~iDli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~  184 (350)
T PRK08446        148 FENISIDLI--YDTPLD---NKKLLKEELKLAKELPINHLSA  184 (350)
T ss_pred             CCEEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence            86 555665  666753   5778888889999999998765

>PRK12677 xylose isomerase; Provisional

Probab=94.27  E-value=2.9  Score=43.57  Aligned_cols=113  Identities=21%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCC-CCCcccccc---CHHHHHHHhHhcCCCcEEEEeCC---------------------
Q 014369          149 VKVELIRRLVSSGLPVVEATSFV-SPKWVPQLA---DARDVMEAVRDLEGARLPVLTPN---------------------  203 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~---D~~~v~~~i~~~~~~~l~~l~~~---------------------  203 (426)
                      .-.++++.+.++|++.||+...- .|-..+...   ..+++.+.++ -.++++.++++|                     
T Consensus        32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~-~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~  110 (384)
T PRK12677         32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALD-ETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRR  110 (384)
T ss_pred             CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHH-HcCCeeEEEecCCCCCccccCCcCCCCCHHHHH
Confidence            34677888999999999996321 110011100   0223333332 135565554321                     


Q ss_pred             ------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHH----HHHHHHHhcCCcEEEEEEe
Q 014369          204 ------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYR----AVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       204 ------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~----~~v~~Ak~~G~~v~~~v~~  264 (426)
                            ++.|+.|.+.|++.|.++......  ......+.+++++++.    .+.++|+++|..|+..|..
T Consensus       111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp  179 (384)
T PRK12677        111 YALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP  179 (384)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence                  123567778899999998542100  0112234455555444    6778888877656544553

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase

Probab=94.25  E-value=3.9  Score=43.36  Aligned_cols=149  Identities=9%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             CCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhh
Q 014369          161 GLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSN  232 (426)
Q Consensus       161 Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~  232 (426)
                      +++.|-+|-. .|..++ ..+..++++.++..    .+..+.+-+ |   +.+.++...++|+.+|.|.+..-+......
T Consensus       102 ~v~~I~fgGG-tP~~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~  179 (455)
T TIGR00538       102 HVSQLHWGGG-TPTYLS-PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQA  179 (455)
T ss_pred             ceEEEEECCC-CcCCCC-HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence            6666766532 111110 02234555555532    234555444 3   346788888999999999874433223334


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC------------
Q 014369          233 INCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT------------  299 (426)
Q Consensus       233 ~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT------------  299 (426)
                      +|+.  ...+++.++++.+++.|++ +.+.++  +|.|..   +.+.+.+.++.+.++|++.|.+-.-            
T Consensus       180 l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~  252 (455)
T TIGR00538       180 VNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK  252 (455)
T ss_pred             hCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc
Confidence            4542  2245667888999999986 555555  666654   6788888899999999998766432            


Q ss_pred             ---CCCCCHHHHHHHHHHHHHh
Q 014369          300 ---IGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       300 ---~G~~~P~~v~~li~~l~~~  318 (426)
                         .....+++..+++..+.+.
T Consensus       253 ~~~~~~~~~e~~~~~~~~~~~~  274 (455)
T TIGR00538       253 IPEAALPSAEEKLDILQETIAF  274 (455)
T ss_pred             ccccCCCCHHHHHHHHHHHHHH
Confidence               1123466666666666554

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=94.25  E-value=2.7  Score=41.17  Aligned_cols=142  Identities=14%  Similarity=0.078  Sum_probs=73.9

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.|.+.|++.|.++-.  +...........+...+.+++++++|+++|+.+..  ... ..+  ...+++.+.+++   
T Consensus       100 i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l--E~~-~~~--~~~t~~~~~~li---  169 (279)
T TIGR00542       100 IQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV--EIM-DTP--FMSSISKWLKWD---  169 (279)
T ss_pred             HHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE--eeC-CCc--hhcCHHHHHHHH---
Confidence            45666789998876521  10000000011345677778889999999987653  221 111  123344444443   


Q ss_pred             HhCCCCEEE-EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          287 HDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       287 ~~~Gad~I~-l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                      .+.+-+.+. +-|+.-...-.  ....+.++...+- -..+|++|..+            |.  .+.  ..+|       
T Consensus       170 ~~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~~~~~-i~~vHikD~~~------------~~--~~~--~p~G-------  223 (279)
T TIGR00542       170 HYLNSPWFTLYPDIGNLSAWD--NDVQMELQLGIDK-IVAIHLKDTKP------------GQ--FKD--VPFG-------  223 (279)
T ss_pred             HHcCCCceEEEeCcChhhhcc--CCHHHHHHHhhhh-EEEEEeCCCCC------------Cc--cCC--cCCC-------
Confidence            344544333 35664221100  1122233322232 47889999754            11  011  1222       


Q ss_pred             CCCcccHHHHHHHHHhCCCC
Q 014369          366 ASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       366 raGNa~lEevv~~L~~lG~~  385 (426)
                       .|..+...++.+|+..|++
T Consensus       224 -~G~id~~~~~~aL~~~gy~  242 (279)
T TIGR00542       224 -EGCVDFERCFKTLKQLNYR  242 (279)
T ss_pred             -CCccCHHHHHHHHHHhCCc
Confidence             5889999999999998775

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=94.16  E-value=1.1  Score=44.64  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----cCCC-CC---CCHH
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTI-GV---GTPG  306 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l-----~DT~-G~---~~P~  306 (426)
                      .+..++++.+.   .++.+..+.++|..         .+++.+.+.++.+.++| +|.|.|     .-.. |.   ..|+
T Consensus        76 ~~~~~~~~~~~---~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~  143 (301)
T PRK07259         76 VDAFIEEELPW---LEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPE  143 (301)
T ss_pred             HHHHHHHHHHH---HhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHH
Confidence            44555554442   23446666655531         35789999999999999 998877     1111 22   3589


Q ss_pred             HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       307 ~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+.++++++++.+. .+|.+..=-+.--...-+..+.++|++.|+.
T Consensus       144 ~~~eiv~~vr~~~~-~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        144 LAYEVVKAVKEVVK-VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             HHHHHHHHHHHhcC-CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence            99999999999873 4677776544433344455677899998864

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=94.14  E-value=5.4  Score=38.37  Aligned_cols=203  Identities=19%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEeccC
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      ..+-+++++.|.+.|++.|=+--.......+ -.+ .++.+.+++..+.++.+-  +++.++++..++.|++.|.+... 
T Consensus        26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~-~~~-~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~-  102 (243)
T cd04731          26 AGDPVELAKRYNEQGADELVFLDITASSEGR-ETM-LDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA-  102 (243)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEcCCcccccC-ccc-HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch-
Confidence            3366889999999999955553221110000 012 234444543333444432  36788999999999998766422 


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--------VGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--------fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                        .+          +..+.+.++++...+..  +.+.+-.-        +-.......+.....++++.+.+.|++.|.+
T Consensus       103 --~~----------~~p~~~~~i~~~~~~~~--i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v  168 (243)
T cd04731         103 --AV----------ENPELIREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL  168 (243)
T ss_pred             --hh----------hChHHHHHHHHHcCCCC--EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence              11          11222333333322111  22222110        0000000112345567788899999999988


Q ss_pred             --cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-CCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369          297 --GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDCSVAGLGGCPYAKGASGNVATE  373 (426)
Q Consensus       297 --~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-Ga~~VD~Sv~GlGecP~a~graGNa~lE  373 (426)
                        -+..|..... -.++++.+++..+. ++..-+--.   ....+..+++. ||+.|=+   |-.=      -.|..+++
T Consensus       169 ~~i~~~g~~~g~-~~~~i~~i~~~~~~-pvia~GGi~---~~~di~~~l~~~g~dgv~v---g~al------~~~~~~~~  234 (243)
T cd04731         169 TSMDRDGTKKGY-DLELIRAVSSAVNI-PVIASGGAG---KPEHFVEAFEEGGADAALA---ASIF------HFGEYTIA  234 (243)
T ss_pred             eccCCCCCCCCC-CHHHHHHHHhhCCC-CEEEeCCCC---CHHHHHHHHHhCCCCEEEE---eHHH------HcCCCCHH
Confidence              4444443322 34567777766543 455443221   12344455555 7764422   2111      24556777


Q ss_pred             HHHHHHH
Q 014369          374 DVVYMLS  380 (426)
Q Consensus       374 evv~~L~  380 (426)
                      ++...|+
T Consensus       235 ~~~~~~~  241 (243)
T cd04731         235 ELKEYLA  241 (243)
T ss_pred             HHHHHHh
Confidence            7766665

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK09249 coproporphyrinogen III oxidase; Provisional

Probab=94.09  E-value=3.1  Score=44.10  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=66.6

Q ss_pred             CCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecC
Q 014369          194 GARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC  268 (426)
Q Consensus       194 ~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~  268 (426)
                      +..+.+-+ |   +.+-++...++|+.+|.|.+..-+......+|+.  ...+.+.++++.+++.|+ .+.+.++  +|.
T Consensus       137 ~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~Gl  212 (453)
T PRK09249        137 DAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLI--YGL  212 (453)
T ss_pred             CCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--ccC
Confidence            34555544 3   2467888889999999998743332233344442  234556678888999998 5766666  566


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |..   +.+.+.+.++.+.+.|++.|.+-.
T Consensus       213 Pgq---t~e~~~~~l~~~~~l~~~~i~~y~  239 (453)
T PRK09249        213 PKQ---TPESFARTLEKVLELRPDRLAVFN  239 (453)
T ss_pred             CCC---CHHHHHHHHHHHHhcCCCEEEEcc
Confidence            654   578888888899999999887764

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.02  E-value=4.2  Score=36.24  Aligned_cols=133  Identities=16%  Similarity=0.158  Sum_probs=78.9

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      .+.++.+.+.|++.|.+-..............         ..+....+..+..+.+.+...        ...+.+...+
T Consensus        15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~a   77 (200)
T cd04722          15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDK---------EVLKEVAAETDLPLGVQLAIN--------DAAAAVDIAA   77 (200)
T ss_pred             HHHHHHHHcCCCCEEEEeeEEECcccCCCccc---------cHHHHHHhhcCCcEEEEEccC--------CchhhhhHHH
Confidence            35667777788888777654322111000000         112223334566666545321        1122333346


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      +.+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.......+.   ..+.|++.|...-...
T Consensus        78 ~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~  147 (200)
T cd04722          78 AAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGG  147 (200)
T ss_pred             HHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcC
Confidence            78889999999999998875 8889999999999876555655555444332221   5688999887654433

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK09358 adenosine deaminase; Provisional

Probab=93.97  E-value=5.4  Score=40.34  Aligned_cols=133  Identities=16%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ..++.+++.|+..+.+++..  .+ ....|.+.++.++.+.+.++.| ++.|+++...++..    .  ..+++...+.+
T Consensus        85 ~~~~e~~~~Gvty~E~~~~p--~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~~  155 (340)
T PRK09358         85 EYLEDAAADGVVYAEIRFDP--QL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAAREL  155 (340)
T ss_pred             HHHHHHHHcCCEEEEEEeCh--hh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHHH
Confidence            44567778899877776542  21 1234788999998888776665 55687766443321    1  12344444444


Q ss_pred             HHHHh--CCCCEE--EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEE
Q 014369          284 KELHD--MGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV  350 (426)
Q Consensus       284 ~~l~~--~Gad~I--~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~V  350 (426)
                      +.+.+  .+-..+  .++-.-....|+.+.+.++..++.  +.++.+|+....+  ..+...|++ .|+++|
T Consensus       156 ~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri  223 (340)
T PRK09358        156 EALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI  223 (340)
T ss_pred             HHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence            44443  332233  333221224677777777776653  3468888876544  345666777 788764

>PRK05799 coproporphyrinogen III oxidase; Provisional

Probab=93.94  E-value=1.4  Score=45.28  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=60.3

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .+-++...++|+.+|.|.+..-+-.....+|+.  ...+++.++++.+++.|+. +.+.++  +|.|..   +.+.+.+.
T Consensus        99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~GlPgq---t~e~~~~~  171 (374)
T PRK05799         99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FGLPNQ---TLEDWKET  171 (374)
T ss_pred             HHHHHHHHHcCCCEEEEECccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cCCCCC---CHHHHHHH
Confidence            456788888999998888743332333345552  1244566778889999986 666665  666754   57888888


Q ss_pred             HHHHHhCCCCEEEE
Q 014369          283 AKELHDMGCFEISL  296 (426)
Q Consensus       283 ~~~l~~~Gad~I~l  296 (426)
                      ++.+.++|++.|.+
T Consensus       172 l~~~~~l~~~~is~  185 (374)
T PRK05799        172 LEKVVELNPEHISC  185 (374)
T ss_pred             HHHHHhcCCCEEEE
Confidence            99999999987765

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=93.91  E-value=7.9  Score=42.12  Aligned_cols=116  Identities=10%  Similarity=0.089  Sum_probs=77.1

Q ss_pred             hhhHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .+.++...+.|+.+|.+.+. .++--+ ..+|+.  ...+.+.++++.+|+.|+.+.+.++  +|.|..   +++...+-
T Consensus       206 ~e~L~~L~~~G~~rVslGVQS~~d~VL-~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~t  277 (522)
T TIGR01211       206 EEHIDRMLKLGATRVELGVQTIYNDIL-ERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLEM  277 (522)
T ss_pred             HHHHHHHHHcCCCEEEEECccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            46788899999999998874 344333 334432  2244556778889999998887776  677754   35666666


Q ss_pred             HHHHHh---CCCCEEEEcCCC-------------C---CCCHHHHHHHHHHHHHhcCCceEEEEe
Q 014369          283 AKELHD---MGCFEISLGDTI-------------G---VGTPGTVVPMLEAVMAVVPVEKLAVHL  328 (426)
Q Consensus       283 ~~~l~~---~Gad~I~l~DT~-------------G---~~~P~~v~~li~~l~~~~p~~~i~~H~  328 (426)
                      ++.+.+   +++|.|.|=-+.             |   ..++++..+++..+.+.+|. .+-+|-
T Consensus       278 ~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~-~i~v~R  341 (522)
T TIGR01211       278 FREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK-WVRIQR  341 (522)
T ss_pred             HHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc-ceEEEe
Confidence            666664   889988776532             2   23457777778888888873 344443

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=93.91  E-value=6.3  Score=37.81  Aligned_cols=134  Identities=22%  Similarity=0.240  Sum_probs=79.1

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcCCce----EEEEeCCCcCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEK----LAVHLHDTYGQ  334 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p~~~----i~~H~HNd~Gl  334 (426)
                      ++.+.|+|.+..+...++.+ ++.+.+.|||.|-+.=-.|.+..   ..+.+-++.+++...+.+    ++...=++.-.
T Consensus        56 v~tVigFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei  134 (211)
T TIGR00126        56 ICTVVGFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI  134 (211)
T ss_pred             EEEEeCCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence            45567889866544455555 56788899999988888885544   666666777776543222    22222222222


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CCC--CCc-ChhhHHHHHHHHHHHhCC
Q 014369          335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVE--TNV-DLRKLMLAGDFINKHLGR  406 (426)
Q Consensus       335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~~--~~i-Dl~~L~~la~~v~~~~g~  406 (426)
                      . -.+..|+++|||+|=+|-+ .+        .+.+..|++..+.+..    +++  -|| +++...+.-+.-...+|.
T Consensus       135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt  203 (211)
T TIGR00126       135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA  203 (211)
T ss_pred             H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence            3 4455688999999988833 22        2447777766665532    222  233 345555544444455554

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=93.87  E-value=5.4  Score=39.49  Aligned_cols=135  Identities=13%  Similarity=0.039  Sum_probs=85.9

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC-C--c--eEEEEeCCCcC
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVP-V--E--KLAVHLHDTYG  333 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p-~--~--~i~~H~HNd~G  333 (426)
                      ++.+.|+|.+..+....+.+ ++.+.+.||++|-+.=-+|.+.-   +.+.+-|+.+++..+ .  +  .|+...=++.-
T Consensus        69 v~tVigFP~G~~~t~~K~~E-a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee  147 (257)
T PRK05283         69 IATVTNFPHGNDDIDIALAE-TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEA  147 (257)
T ss_pred             EEEEecCCCCCCcHHHHHHH-HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHH
Confidence            55667889865555555555 55677789999988877777665   445556666665433 1  1  35556566664


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC---------CCC--CCc-ChhhHHHHHHHHH
Q 014369          334 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL---------GVE--TNV-DLRKLMLAGDFIN  401 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l---------G~~--~~i-Dl~~L~~la~~v~  401 (426)
                      .=.--+..|+++|||+|=+|-+ .+        .+.+..|++..+.+..         |++  -|| +++...++-+..+
T Consensus       148 ~i~~a~~~a~~aGADFVKTSTG-f~--------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~  218 (257)
T PRK05283        148 LIRKASEIAIKAGADFIKTSTG-KV--------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALAD  218 (257)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHH
Confidence            3234556799999999988854 33        2447788777765542         222  233 4556666666667


Q ss_pred             HHhCC
Q 014369          402 KHLGR  406 (426)
Q Consensus       402 ~~~g~  406 (426)
                      +.+|-
T Consensus       219 ~~lg~  223 (257)
T PRK05283        219 EILGA  223 (257)
T ss_pred             HHhCh
Confidence            77764

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=93.70  E-value=0.043  Score=52.16  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=96.4

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .+-++.|.++|++.+=+    |.|+     |++.-..+.++.+++..+..+-  .++.+ .+-++...++|++.|.+..-
T Consensus        15 ~~~i~~l~~~g~d~lHiDiMDg~fv-----pn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E   89 (201)
T PF00834_consen   15 EEEIKRLEEAGADWLHIDIMDGHFV-----PNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAE   89 (201)
T ss_dssp             HHHHHHHHHTT-SEEEEEEEBSSSS-----SSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG
T ss_pred             HHHHHHHHHcCCCEEEEeecccccC-----CcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc
Confidence            45678889999996544    4444     4554456777788876655544  45555 45688899999998877542


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT  299 (426)
                                      +.+...++++++|++|+++...+.     |.   ++.+.+.++..     -+|.|-+    +..
T Consensus        90 ----------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~~~~l~-----~vD~VlvMsV~PG~  140 (201)
T PF00834_consen   90 ----------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEELEPYLD-----QVDMVLVMSVEPGF  140 (201)
T ss_dssp             ----------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGGTTTGC-----CSSEEEEESS-TTT
T ss_pred             ----------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHHHHHhh-----hcCEEEEEEecCCC
Confidence                            234456788899999999875553     32   34444444332     2555444    344


Q ss_pred             CCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|...=..+.+-|+.+++..+    ...|++    |=|.-..|+-...++||+.+
T Consensus       141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~  191 (201)
T PF00834_consen  141 GGQKFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF  191 (201)
T ss_dssp             SSB--HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            554444445555666665443    234555    55777778888899999966

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=93.69  E-value=3.2  Score=42.75  Aligned_cols=108  Identities=22%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             HHHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369          182 ARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  253 (426)
Q Consensus       182 ~~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~  253 (426)
                      ..++++.++..    ++.++++-+ |   +.+.++...++|+.+|.+.+..-+......+|+.  ...+++.++++.+++
T Consensus        78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~  155 (375)
T PRK05628         78 LARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARA  155 (375)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence            34555555532    345555544 3   2456788888999999999744333334445543  234455677888999


Q ss_pred             cCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          254 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       254 ~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .|+. +.+.++  +|.|..   +.+.+.+-++.+.++|++.|.+
T Consensus       156 ~g~~~v~~dli--~GlPgq---t~~~~~~tl~~~~~l~~~~i~~  194 (375)
T PRK05628        156 AGFEHVNLDLI--YGTPGE---SDDDWRASLDAALEAGVDHVSA  194 (375)
T ss_pred             cCCCcEEEEEe--ccCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence            9998 776666  666754   4678888888999999987764

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=93.68  E-value=2.8  Score=43.19  Aligned_cols=95  Identities=7%  Similarity=-0.010  Sum_probs=65.1

Q ss_pred             CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCC
Q 014369          195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCP  269 (426)
Q Consensus       195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~p  269 (426)
                      +++.+-+ |   +.+.++...++|+.+|.+.+..-+......+|+.  ...+++.++++.+++.|+. +.+.++  +|.|
T Consensus        87 ~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli--~GlP  162 (377)
T PRK08599         87 EEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKKAGFDNISIDLI--YALP  162 (377)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeee--cCCC
Confidence            3555444 3   3466788888999999998754433333345553  2355667888899999987 555555  6777


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          270 VEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      ..   +.+.+.+.++.+.+++++.|.+
T Consensus       163 gq---t~~~~~~~l~~~~~l~~~~i~~  186 (377)
T PRK08599        163 GQ---TIEDFKESLAKALALDIPHYSA  186 (377)
T ss_pred             CC---CHHHHHHHHHHHHccCCCEEee
Confidence            54   4678888888889999987754

>PRK05660 HemN family oxidoreductase; Provisional

Probab=93.68  E-value=3.9  Score=42.31  Aligned_cols=108  Identities=14%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             HHHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369          182 ARDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  253 (426)
Q Consensus       182 ~~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~  253 (426)
                      ..++++.+++ .   +++.+++-+ |   +.+.++...++|+.+|.+.+..-+...-..+|+.  ...+++.++++.+++
T Consensus        77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~  154 (378)
T PRK05660         77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQG  154 (378)
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence            3455555553 2   345666555 3   2467888889999999998754443333345543  234556677888999


Q ss_pred             cCCcE-EEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          254 LSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       254 ~G~~v-~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .|+.. .+.++  +|.|..   +.+.+.+.++.+.++|++.|.+
T Consensus       155 ~G~~~v~~dli--~Glpgq---t~~~~~~~l~~~~~l~p~~is~  193 (378)
T PRK05660        155 LGLRSFNLDLM--HGLPDQ---SLEEALDDLRQAIALNPPHLSW  193 (378)
T ss_pred             cCCCeEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCeEEe
Confidence            99963 55555  666754   5788888899999999998863

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=93.62  E-value=2.4  Score=43.04  Aligned_cols=135  Identities=22%  Similarity=0.220  Sum_probs=84.2

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r  273 (426)
                      .+++.++|.|.|.|-..-        |+.  .+...+|-+.++-.+.+.++++.+|+.   ++.|.+-+...-.  ....
T Consensus       160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~--~~~g  237 (336)
T cd02932         160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW--VEGG  237 (336)
T ss_pred             HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc--CCCC
Confidence            356677999988876421        221  334456778888888888888888875   3445544442110  1234


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGV--------GTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~--------~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~  344 (426)
                      .+++...++++.+.++|+|.|.+.  .|.        ..|....++.+.+++.++. +|.. -.-.    ....+..+++
T Consensus       238 ~~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G~i~----t~~~a~~~l~  310 (336)
T cd02932         238 WDLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAGI-PVIAVGLIT----DPEQAEAILE  310 (336)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCCC-CEEEeCCCC----CHHHHHHHHH
Confidence            578899999999999999999873  121        1122334667778887753 3332 2222    2456677788


Q ss_pred             cC-CCEE
Q 014369          345 MG-ISTV  350 (426)
Q Consensus       345 aG-a~~V  350 (426)
                      .| +|.|
T Consensus       311 ~g~aD~V  317 (336)
T cd02932         311 SGRADLV  317 (336)
T ss_pred             cCCCCee
Confidence            88 6665

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=93.62  E-value=7.4  Score=38.28  Aligned_cols=201  Identities=16%  Similarity=0.150  Sum_probs=102.2

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCC-ccccccC---HHHHHHHhHh--cCCCcEEEEe--------CCh-----------h
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPK-WVPQLAD---ARDVMEAVRD--LEGARLPVLT--------PNL-----------K  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~-~~p~~~D---~~~v~~~i~~--~~~~~l~~l~--------~~~-----------~  205 (426)
                      ...++.+.+.|++.+|+- ..+|. |....-+   .+++.+.+..  +....+.+.+        ++.           +
T Consensus        14 ~~a~~~~~~~G~~~~qif-~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~   92 (274)
T TIGR00587        14 QAAYNRAAEIGATAFMFF-LKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDE   92 (274)
T ss_pred             HHHHHHHHHhCCCEEEEE-ecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence            457788899999999993 33443 3222212   2222222221  1111122221        221           2


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .++.|...|++.|.+..+.-       ...+.+++++++.+.++.+-+....|...+...-+.+..--.+++.+.++.+.
T Consensus        93 ~i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~  165 (274)
T TIGR00587        93 ELKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV  165 (274)
T ss_pred             HHHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence            35667778888666653211       12245677777777765554322224444443222211122477777777665


Q ss_pred             HHhCCCCEEEEc-CC-----CCCC--CHHHHHHHHHHHHHhcC-CceEEEEeCCCcC-cHHHHHHHHHHcCCCEEeeccc
Q 014369          286 LHDMGCFEISLG-DT-----IGVG--TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG-QSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       286 l~~~Gad~I~l~-DT-----~G~~--~P~~v~~li~~l~~~~p-~~~i~~H~HNd~G-lA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      +..  .+.+.++ ||     .|.-  ++..+.++++.+.+.++ ..-..+|+||+.. .+         .|.+ -+   .
T Consensus       166 ~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H---~  230 (274)
T TIGR00587       166 IVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH---E  230 (274)
T ss_pred             cCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC---C
Confidence            432  1233333 22     2321  26667777777776654 2236689998742 11         0111 11   2


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          356 GLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       356 GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      .+|        .|+.+.+.++..|+..
T Consensus       231 ~iG--------~G~i~~~~~~~~L~~~  249 (274)
T TIGR00587       231 NIG--------EGIIGFDAFRLIMDDE  249 (274)
T ss_pred             CcC--------CccCCHHHHHHHHcCc
Confidence            233        4889999999999763

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=93.62  E-value=0.39  Score=46.33  Aligned_cols=99  Identities=16%  Similarity=0.096  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH--HHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v--~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|+..+.+.++++.+.|++.+=+==+-|...|+-.  .+.++.+++..|..++.+|.| +|....+   -...++||++|
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad~i   92 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGASQF   92 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCCEE
Confidence            46788999999999999986544333388888632  467889988877778999999 4433322   45668899988


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       351 D~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                        |+.+  |       ++...++..+..++.+|...
T Consensus        93 --tvH~--e-------a~~~~~~~~l~~ik~~G~~~  117 (228)
T PTZ00170         93 --TFHI--E-------ATEDDPKAVARKIREAGMKV  117 (228)
T ss_pred             --EEec--c-------CCchHHHHHHHHHHHCCCeE
Confidence              4443  2       22222667777777666543

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.59  E-value=0.85  Score=47.91  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      ..+.++.+.++|+|.|.| |+.. ..+..+.++++.+++.+|+..|-+..=-    -...++.++++|||.|-+   |+|
T Consensus       154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~v---G~g  224 (404)
T PRK06843        154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKV---GIG  224 (404)
T ss_pred             HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEE---CCC
Confidence            456688899999999998 6665 4578999999999999997555444322    246778889999999984   555


Q ss_pred             C
Q 014369          359 G  359 (426)
Q Consensus       359 e  359 (426)
                      .
T Consensus       225 ~  225 (404)
T PRK06843        225 P  225 (404)
T ss_pred             C
Confidence            3

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=93.58  E-value=1.3  Score=43.14  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=89.4

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                      -..+.+.++|++.+.+.-+.    ....+      ..+.++.++.++.+++.+   .+++.+.+-      . +-.+++.
T Consensus        20 ~sA~~~e~~G~~ai~~s~~~----~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~------~-G~g~~~~   85 (243)
T cd00377          20 LSARLAERAGFKAIYTSGAG----VAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADAD------T-GYGNALN   85 (243)
T ss_pred             HHHHHHHHcCCCEEEeccHH----HHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcC------C-CCCCHHH
Confidence            34456667798887775221    11111      236788888777766554   445543332      2 2236788


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCC---ceEEEE-----e-CCCcCcHHHH
Q 014369          279 VAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPV---EKLAVH-----L-HDTYGQSLPN  338 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~---~~i~~H-----~-HNd~GlA~AN  338 (426)
                      +.+.++.+.+.|++.|.|-|..+           +..+++..+.|++.++...+   ..|-.-     . .+.+--++.-
T Consensus        86 ~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R  165 (243)
T cd00377          86 VARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER  165 (243)
T ss_pred             HHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH
Confidence            88999999999999999988763           56788888889988887543   222222     1 1456668899


Q ss_pred             HHHHHHcCCCEEe
Q 014369          339 ILISLQMGISTVD  351 (426)
Q Consensus       339 aLaAl~aGa~~VD  351 (426)
                      +.++.++|||.|=
T Consensus       166 a~ay~~AGAD~v~  178 (243)
T cd00377         166 AKAYAEAGADGIF  178 (243)
T ss_pred             HHHHHHcCCCEEE
Confidence            9999999999763

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.58  E-value=1.9  Score=46.51  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC-
Q 014369          150 KVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS-  225 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S-  225 (426)
                      -++.++.|.++|++.|++-... ..      ....+.++.++. .|++.+.+ -+-+.++.+.++++|+|.|.+.+... 
T Consensus       242 ~~~~~~~l~~ag~d~i~id~a~G~s------~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs  315 (495)
T PTZ00314        242 DIERAAALIEAGVDVLVVDSSQGNS------IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS  315 (495)
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCc------hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence            3899999999999999997521 11      112344555553 35555444 23467899999999999998754211 


Q ss_pred             --hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          226 --EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       226 --d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                        -.......+..   .+..+.++.+.+++.|+++.         ++.+-.++.++++    +.++||+.+.+.--.  +
T Consensus       316 ~~~t~~~~~~g~p---~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~di~k----Ala~GA~~Vm~G~~~--a  377 (495)
T PTZ00314        316 ICITQEVCAVGRP---QASAVYHVARYARERGVPCI---------ADGGIKNSGDICK----ALALGADCVMLGSLL--A  377 (495)
T ss_pred             ccccchhccCCCC---hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHHHHH----HHHcCCCEEEECchh--c
Confidence              11111122222   24455677778888887654         2455455555443    335999999876542  1


Q ss_pred             CHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHH
Q 014369          304 TPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI  341 (426)
Q Consensus       304 ~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLa  341 (426)
                      .+.           +.|...+   +-....-+|||...++.
T Consensus       378 ~~~-----------e~~~~~~~~~g~~~k~yrGm~s~~a~~  407 (495)
T PTZ00314        378 GTE-----------EAPGEYFFKDGVRLKVYRGMGSLEAML  407 (495)
T ss_pred             ccc-----------ccCCceeeeCCeEEEEEeccchHHHhh
Confidence            111           2333111   23455678999766554

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.52  E-value=2  Score=42.32  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEc----CCCC----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--cHHHHHHHHHH
Q 014369          275 PPSKVAYVAKELHDMGCFEISLG----DTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QSLPNILISLQ  344 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~----DT~G----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--lA~ANaLaAl~  344 (426)
                      +++.+.+.++.+.++|+|.|.|-    .+.+    .-.|..+.++++.+++.+. .+|.+-.=-...  -...-+-++.+
T Consensus       109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~-~pv~vKl~~~~~~~~~~~~a~~l~~  187 (289)
T cd02810         109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVD-IPLLVKLSPYFDLEDIVELAKAAER  187 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccC-CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            67889999999999999977762    2221    2368899999999998863 356655443333  23445556678


Q ss_pred             cCCCEEeec
Q 014369          345 MGISTVDCS  353 (426)
Q Consensus       345 aGa~~VD~S  353 (426)
                      +||+.|.++
T Consensus       188 ~Gad~i~~~  196 (289)
T cd02810         188 AGADGLTAI  196 (289)
T ss_pred             cCCCEEEEE
Confidence            999988764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=93.51  E-value=0.66  Score=43.84  Aligned_cols=171  Identities=16%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCc--EEEE-eCC-h-hhHHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--LPVL-TPN-L-KGFEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~--l~~l-~~~-~-~di~~a~~~Gv~~V~  219 (426)
                      .+.++.+++++.+... +..||+|.+--..      ...++++.+++.....  +-.+ ..+ . .-++.+.++|+|.|.
T Consensus        13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~------~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vt   85 (215)
T PRK13813         13 TDRERALKIAEELDDY-VDAIKVGWPLVLA------SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGII   85 (215)
T ss_pred             CCHHHHHHHHHhcccc-CCEEEEcHHHHHh------hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEE
Confidence            3566667777666443 5789999642110      1124555565432211  1111 222 2 234788899999888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      +..-...               +.+..+++++++.|+++.+.+...  .+.....-.+++..+++...+.|.+...+.- 
T Consensus        86 vh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~-  147 (215)
T PRK13813         86 VHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAPA-  147 (215)
T ss_pred             EcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-
Confidence            7654321               234567888899999876544321  1211111134566677777888987654221 


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH--HHHHHHHcCCCEEe
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP--NILISLQMGISTVD  351 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A--NaLaAl~aGa~~VD  351 (426)
                         ..+    +.++.+++..+. .+.+   =|-|....  |.-.++++|++++-
T Consensus       148 ---~~~----~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV  190 (215)
T PRK13813        148 ---TRP----ERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVI  190 (215)
T ss_pred             ---Ccc----hhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEE
Confidence               112    334556555542 1111   22344433  48889999999773

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=93.49  E-value=2.3  Score=45.32  Aligned_cols=144  Identities=18%  Similarity=0.266  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCc--cccccCHHHHHHHhHhcCCC-cEE--EEeCC---hhhHHHHHHc-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKW--VPQLADARDVMEAVRDLEGA-RLP--VLTPN---LKGFEAAIAA-  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~--~p~~~D~~~v~~~i~~~~~~-~l~--~l~~~---~~di~~a~~~-  213 (426)
                      ..+.++.++.++.|.+.|++.|.+.-.. +..+  .|.-.+..++++.+...++. ++.  ...|.   .+-++...+. 
T Consensus       183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~  262 (459)
T PRK14338        183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP  262 (459)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence            5689999999999999999988775311 1111  11112345566666554443 333  22232   2334555453 


Q ss_pred             -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                       |...+++.+ +.|+--++. +++.  ...+.+.++++.+++.  |+.+.++++  +|.|..   +.+.+.+.++.+.+.
T Consensus       263 ~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l  334 (459)
T PRK14338        263 KCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEI  334 (459)
T ss_pred             ccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence             467787776 445543332 4432  1345556777777777  666666666  677765   467777888888888


Q ss_pred             CCCEEE
Q 014369          290 GCFEIS  295 (426)
Q Consensus       290 Gad~I~  295 (426)
                      +.+.+.
T Consensus       335 ~~~~v~  340 (459)
T PRK14338        335 RFDKVH  340 (459)
T ss_pred             CCCEeE
Confidence            887554

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=93.42  E-value=6.9  Score=36.71  Aligned_cols=172  Identities=17%  Similarity=0.134  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCc--EEEEeCC-hhhHHHHHHcCCCEEEEe
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--LPVLTPN-LKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~--l~~l~~~-~~di~~a~~~Gv~~V~i~  221 (426)
                      ++...-.+.++.+.+.|++.|+++.-- ....|...-..+..+.++...+..  +..++.. .+.++.+.++|++.|.+.
T Consensus        13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d-~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh   91 (220)
T PRK05581         13 ADFARLGEEVKAVEAAGADWIHVDVMD-GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFH   91 (220)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCcc-CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEe
Confidence            344555778999999999999996311 111222211123344444322222  2234443 456788889999997776


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----c
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G  297 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~  297 (426)
                      ...++                ...+.++.+++.|+.+...+.     |   .++.+.+.++.     .++|.|.+    +
T Consensus        92 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~t~~e~~~~~~-----~~~d~i~~~~~~~  142 (220)
T PRK05581         92 VEASE----------------HIHRLLQLIKSAGIKAGLVLN-----P---ATPLEPLEDVL-----DLLDLVLLMSVNP  142 (220)
T ss_pred             eccch----------------hHHHHHHHHHHcCCEEEEEEC-----C---CCCHHHHHHHH-----hhCCEEEEEEECC
Confidence            44222                223557788889987663221     1   12333333322     23554433    2


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCC----ceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p~----~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -+.|...+....+.++.+++..+.    ..+.+    +-|.-..|+-..+++|++.|
T Consensus       143 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~v  195 (220)
T PRK05581        143 GFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVF  195 (220)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            334433344556666666655431    12222    34888888888888999865

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=93.40  E-value=0.81  Score=46.68  Aligned_cols=77  Identities=21%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEe---------CCCcCcHHHHHHHH
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILIS  342 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT-~G~~~P~~v~~li~~l~~~~p~~~i~~H~---------HNd~GlA~ANaLaA  342 (426)
                      +.+++.+.+.++.+.+.|+..|.|.+- .-....+.+.++++.+++..|.  +.+|+         |.+.|+-..-.+..
T Consensus        69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~  146 (343)
T TIGR03551        69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR  146 (343)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            468999999999999999999999932 2234677889999999998875  44554         66888877777776


Q ss_pred             H-HcCCCEEe
Q 014369          343 L-QMGISTVD  351 (426)
Q Consensus       343 l-~aGa~~VD  351 (426)
                      + +||++.+.
T Consensus       147 LkeAGl~~i~  156 (343)
T TIGR03551       147 LKEAGLDSMP  156 (343)
T ss_pred             HHHhCccccc
Confidence            6 78999886

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=93.39  E-value=7.6  Score=39.78  Aligned_cols=176  Identities=15%  Similarity=0.186  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecC-----CCC---C--c-ccc-c--cCHHHHHHHh----------H-h--cCCCcEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSF-----VSP---K--W-VPQ-L--ADARDVMEAV----------R-D--LEGARLP  198 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~-----~s~---~--~-~p~-~--~D~~~v~~~i----------~-~--~~~~~l~  198 (426)
                      +.+..+++++.-.++|.+.|=+=.+     ..+   +  + .+. .  ....++++.+          . .  -.++.+.
T Consensus        14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~   93 (329)
T TIGR03569        14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL   93 (329)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence            6677788888889999998776432     111   1  0 000 0  0111111111          1 1  1233333


Q ss_pred             EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                      .-.-....++...+.|++.+.|.-.  +.              .+ ..+++++.+.|.+|.  ++       .+..+.++
T Consensus        94 stpfd~~svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~E  147 (329)
T TIGR03569        94 STPFDLESADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEE  147 (329)
T ss_pred             EEeCCHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence            3334678888888889998888622  11              11 255666777798876  33       24468899


Q ss_pred             HHHHHHHHHhCCCC--EEEE--cCCCCCCCHHHHHH--HHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          279 VAYVAKELHDMGCF--EISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       279 l~~~~~~l~~~Gad--~I~l--~DT~G~~~P~~v~~--li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +...++.+.+.|..  .|.|  | +.++-+|..-.+  .|..+++.++ .+|++=-|-   ++...+++|+..||++|+-
T Consensus       148 i~~Av~~i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt---~G~~~~~aAvalGA~iIEk  222 (329)
T TIGR03569       148 IEAAVGVLRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT---LGIEAPIAAVALGATVIEK  222 (329)
T ss_pred             HHHHHHHHHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC---ccHHHHHHHHHcCCCEEEe
Confidence            99999999999975  2444  5 345556655433  3788888886 479985443   3467789999999998854

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=93.38  E-value=3.1  Score=41.83  Aligned_cols=51  Identities=22%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .+.+.++++.+++.|+.+.++++  +|.|..   +.+.+.+.++.+.+++++.|.+
T Consensus       162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i  212 (302)
T TIGR01212       162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI  212 (302)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            45567888899999999887776  677754   4688888899999999987774

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>TIGR02317 prpB methylisocitrate lyase

Probab=93.37  E-value=1.5  Score=44.07  Aligned_cols=135  Identities=12%  Similarity=0.179  Sum_probs=85.4

Q ss_pred             hHHHHHHcCCCEEEEec-cCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFA-SASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ..+.+.++|.+-+.+.= .++-.+-.--. -.+.++.++.+.++++.   -.++|.+.+-       .+--++..+.+.+
T Consensus        25 SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv   94 (285)
T TIGR02317        25 AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTV   94 (285)
T ss_pred             HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHH
Confidence            34556667888776641 11110000001 13677888877766544   3677775443       3333588999999


Q ss_pred             HHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeC------CCcCcHHHHHHHHHHcC
Q 014369          284 KELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMG  346 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~H------Nd~GlA~ANaLaAl~aG  346 (426)
                      +.+.++|+..|.|-|.++           +..++++...|++.++...+..+-+=.-      ..+--|+.-+.+..++|
T Consensus        95 ~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AG  174 (285)
T TIGR02317        95 REMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAG  174 (285)
T ss_pred             HHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcC
Confidence            999999999999999873           3456677777777776543222333222      23446778888889999


Q ss_pred             CCEE
Q 014369          347 ISTV  350 (426)
Q Consensus       347 a~~V  350 (426)
                      ||.|
T Consensus       175 AD~v  178 (285)
T TIGR02317       175 ADMI  178 (285)
T ss_pred             CCEE
Confidence            9966

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=93.36  E-value=2.6  Score=42.22  Aligned_cols=68  Identities=18%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      .++.+ ++.|.++|+|.|   |-.-..+|  ..+++..+|..+ ..+|-.-+-|     +..++.+++.||+.|-+|..|
T Consensus        77 gh~~E-a~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~  144 (287)
T TIGR00343        77 GHFVE-AQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA  144 (287)
T ss_pred             cHHHH-HHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence            34444 788999999999   88889999  688899999888 3344444333     567889999999999999875

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=93.30  E-value=0.45  Score=44.88  Aligned_cols=90  Identities=18%  Similarity=0.290  Sum_probs=59.1

Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      -++.+.++|++.|.| |......|..+.++++.+++++ . .+-.-+-     -+..++.|.++|+|.|-+|+.|+=+  
T Consensus        56 ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-~-l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~--  125 (192)
T PF04131_consen   56 EVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-Q-LVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP--  125 (192)
T ss_dssp             HHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-S-EEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST--
T ss_pred             HHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-c-EEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC--
Confidence            356677899999988 6667778899999999999987 2 2333332     2688999999999999999999864  


Q ss_pred             CCCCCCCcccHHHHHHHHHhCCC
Q 014369          362 YAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~lG~  384 (426)
                      +.++   ..|=-+++..|...++
T Consensus       126 ~t~~---~~pD~~lv~~l~~~~~  145 (192)
T PF04131_consen  126 YTKG---DGPDFELVRELVQADV  145 (192)
T ss_dssp             TSTT---SSHHHHHHHHHHHTTS
T ss_pred             CCCC---CCCCHHHHHHHHhCCC
Confidence            3333   3333344445554443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.29  E-value=1.5  Score=43.52  Aligned_cols=128  Identities=20%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             hHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV  282 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~  282 (426)
                      .+|.|+..|++-|.+.+.+ |+         +-.+.++.+.++++.|.++|+.+.. .++--|.-+..  -.+++.+...
T Consensus       102 ~ve~ai~lgadAV~~~Vy~Gse---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~a  171 (265)
T COG1830         102 TVEDAIRLGADAVGATVYVGSE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYA  171 (265)
T ss_pred             eHHHHHhCCCcEEEEEEecCCc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHH
Confidence            5788999999865544321 11         1247899999999999999998763 23323322212  3678899999


Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---CCcCcHHHHHHHHHHcCCCEEe
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H---Nd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      ++...++|+|.|-..=|   ..|+.+++.++.-    | .++-+-+=   ++.--.+.-.-.|+++|+..+.
T Consensus       172 aRlaaelGADIiK~~yt---g~~e~F~~vv~~~----~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~  235 (265)
T COG1830         172 ARLAAELGADIIKTKYT---GDPESFRRVVAAC----G-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA  235 (265)
T ss_pred             HHHHHHhcCCeEeecCC---CChHHHHHHHHhC----C-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence            99999999998875433   2345555555543    3 23333221   2445567777888888887654

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=93.28  E-value=2.7  Score=43.15  Aligned_cols=139  Identities=19%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             HHHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C------CcEEEEEEeeecCC
Q 014369          207 FEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S------IPVRGYVSCVVGCP  269 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G------~~v~~~v~~~fg~p  269 (426)
                      .++|.++|.|.|.|...        +|+..  +...+|-+.++=...+.++++.+|+. |      +.|.+-++..-  .
T Consensus       150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~--~  227 (353)
T cd04735         150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE--P  227 (353)
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc--c
Confidence            35667899999888642        34433  23447778887777777888777764 4      33433343210  0


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC----CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHH
Q 014369          270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~----G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      ..+-.++++..++++.+.++|+|.|.+.-..    ....|..-..+++.+++.+. .++|...+-  .- -...+..+++
T Consensus       228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg--i~-t~e~ae~~l~  304 (353)
T cd04735         228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS--IN-TPDDALEALE  304 (353)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC--CC-CHHHHHHHHH
Confidence            1223567888999999999999999885311    01111112345566666552 334444332  11 2355666777


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      .|||.|
T Consensus       305 ~gaD~V  310 (353)
T cd04735         305 TGADLV  310 (353)
T ss_pred             cCCChH
Confidence            787654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13745 anaerobic sulfatase-maturase; Provisional

Probab=93.26  E-value=6.6  Score=41.10  Aligned_cols=142  Identities=13%  Similarity=0.052  Sum_probs=83.0

Q ss_pred             CCCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccccC---HHHHHHHhHh-cC--CCcEEEEeC----ChhhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLAD---ARDVMEAVRD-LE--GARLPVLTP----NLKGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D---~~~v~~~i~~-~~--~~~l~~l~~----~~~di~~a~~  212 (426)
                      .++.++-.++++.+.+. |++.+.+.+...   .|-+..   ..++++.+++ ..  ++.+...+-    +.+-++...+
T Consensus        47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG---EPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~  123 (412)
T PRK13745         47 VMSDELLEKFIKEYINSQTMPQVLFTWHGG---ETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRE  123 (412)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCeEEEEEEcc---ccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHH
Confidence            47888888888887764 778888876432   233322   2223344332 22  233333332    3445666677


Q ss_pred             cCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          213 AGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       213 ~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .++ .|.|.+-.. +.|........-...++++.+.++.++++|+.+.  +.+++     ++...+.+.++++.+.+.|+
T Consensus       124 ~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv-----~~~n~~~~~e~~~~~~~lg~  195 (412)
T PRK13745        124 NNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV-----NDFNADYPLDFYHFFKELDC  195 (412)
T ss_pred             cCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE-----cCCccccHHHHHHHHHHcCC
Confidence            785 677765332 3343322111112467777788888899998765  33334     23445667778888889999


Q ss_pred             CEEEE
Q 014369          292 FEISL  296 (426)
Q Consensus       292 d~I~l  296 (426)
                      +.+.+
T Consensus       196 ~~~~~  200 (412)
T PRK13745        196 HYIQF  200 (412)
T ss_pred             CeEEE
Confidence            87765

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=93.19  E-value=11  Score=38.60  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=108.4

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++.+++|+.|.++|...+-.|.|-   +|.....+  .++-++.++.   -.++.+..=..+..+++.+.+. ++.+.
T Consensus       105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq  181 (335)
T PRK08673        105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ  181 (335)
T ss_pred             CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE
Confidence            78888999999999999977766542   22111111  1223333332   2344444333567888888777 88888


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      |....          +.-       .++++++-+.|.+|-  ++.      ....+++++...++.+...|-..|.|+.-
T Consensus       182 IgAr~----------~~N-------~~LL~~va~~~kPVi--Lk~------G~~~ti~E~l~A~e~i~~~GN~~viL~er  236 (335)
T PRK08673        182 IGARN----------MQN-------FDLLKEVGKTNKPVL--LKR------GMSATIEEWLMAAEYILAEGNPNVILCER  236 (335)
T ss_pred             ECccc----------ccC-------HHHHHHHHcCCCcEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            86331          111       145556667788876  331      11236888989999999999988888873


Q ss_pred             -C-CC-CCHHHHHH--HHHHHHHhcCCceE-EEEeCC--CcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          300 -I-GV-GTPGTVVP--MLEAVMAVVPVEKL-AVHLHD--TYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       300 -~-G~-~~P~~v~~--li~~l~~~~p~~~i-~~H~HN--d~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                       + .+ -.|....+  .+..+++.++ .++ ..=.|-  ..-+-..-+++|+.+||+  .|+.-..
T Consensus       237 G~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~  301 (335)
T PRK08673        237 GIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD  301 (335)
T ss_pred             CCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence             1 22 12233322  3556666554 244 443333  233445779999999999  7765443

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=93.18  E-value=3.9  Score=43.51  Aligned_cols=140  Identities=12%  Similarity=0.098  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec---CCCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS---FVSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~---~~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~G  214 (426)
                      ..+.+..++-++.|.+.|++.|-+..   .....   ...+..++++.+...++   +++....|.   .+-++...++|
T Consensus       182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~---~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~  258 (449)
T PRK14332        182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE---QSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNP  258 (449)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC---CcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCC
Confidence            56889999999999999998887642   11111   11234444444433332   233322232   23356666777


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ...+++.+ +.|+.-++ .+|+..  ..+.+.++++.+++.  ++.+..+++  +|.|..+   .+.+.+..+.+.+.
T Consensus       259 ~~~~~l~lgvQSgsd~vLk-~m~R~~--t~~~~~~~i~~lr~~~p~i~i~td~I--vGfPgET---~edf~~tl~~v~~l  330 (449)
T PRK14332        259 RFCPNIHLPLQAGNTRVLE-EMKRSY--SKEEFLDVVKEIRNIVPDVGITTDII--VGFPNET---EEEFEDTLAVVREV  330 (449)
T ss_pred             CccceEEECCCcCCHHHHH-hhCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--eeCCCCC---HHHHHHHHHHHHhC
Confidence              67888886 45554443 344431  244556777777776  555665555  6778764   56777777777888


Q ss_pred             CCCEE
Q 014369          290 GCFEI  294 (426)
Q Consensus       290 Gad~I  294 (426)
                      +.+.+
T Consensus       331 ~~~~~  335 (449)
T PRK14332        331 QFDMA  335 (449)
T ss_pred             CCCEE
Confidence            87755

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=93.16  E-value=7.1  Score=38.16  Aligned_cols=137  Identities=18%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             CcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec
Q 014369          195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  267 (426)
Q Consensus       195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg  267 (426)
                      -.+.+++ .+.-..+.+.++|++.|.+.-+..    ...+      ..+.++.+..++.+.+.++.  ..|.+.      
T Consensus        12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~----a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--~pviaD------   79 (240)
T cd06556          12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQG----MTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--ALIVAD------   79 (240)
T ss_pred             CeEEEecCCCHHHHHHHHHcCCCEEEEChHHH----HHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--CCEEEe------
Confidence            4444443 244455667778999888763321    2222      24677777777666554431  344432      


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC------CcC--------
Q 014369          268 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD------TYG--------  333 (426)
Q Consensus       268 ~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN------d~G--------  333 (426)
                      .|..+-.+++.+.+.++++.++|++.|.|-|..      ++.+.++++++.-  ..|-.|+=-      +.|        
T Consensus        80 ~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~  151 (240)
T cd06556          80 LPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRG  151 (240)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccC
Confidence            344433467899999999999999999999973      4555677776642  234444322      111        


Q ss_pred             -----cHHHHHHHHHHcCCCEEe
Q 014369          334 -----QSLPNILISLQMGISTVD  351 (426)
Q Consensus       334 -----lA~ANaLaAl~aGa~~VD  351 (426)
                           -++.-+.+-.++||+.|=
T Consensus       152 ~~~~~~ai~Ra~ay~~AGAd~i~  174 (240)
T cd06556         152 DEAGEQLIADALAYAPAGADLIV  174 (240)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEE
Confidence                 335556666788888663

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein

Probab=93.15  E-value=11  Score=38.25  Aligned_cols=158  Identities=13%  Similarity=0.082  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccc---cCHHHHHHHhHhcCCCc---EEE----EeC---ChhhHHH
Q 014369          144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQL---ADARDVMEAVRDLEGAR---LPV----LTP---NLKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~---~D~~~v~~~i~~~~~~~---l~~----l~~---~~~di~~  209 (426)
                      .++.++..++++.|.+. ||..|-++-. .    |-+   .+..++++.++.++..+   +..    ..+   +.+-++.
T Consensus       118 ~l~~~e~~~~i~~i~~~~~I~~VilSGG-D----Pl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~  192 (321)
T TIGR03822       118 VLSPAELDAAFAYIADHPEIWEVILTGG-D----PLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAA  192 (321)
T ss_pred             cCCHHHHHHHHHHHHhCCCccEEEEeCC-C----cccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHH
Confidence            46778878888888754 8887776431 1    212   13345566666555442   221    112   1234566


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      ..++|.. +.|.+..+.          ..+..+.+.++++.+++.|+.+.......=|    --.+.+.+.++.+.+.++
T Consensus       193 L~~~g~~-v~i~l~~~h----------~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g----vNd~~~~l~~l~~~l~~~  257 (321)
T TIGR03822       193 LKTSGKT-VYVALHANH----------ARELTAEARAACARLIDAGIPMVSQSVLLRG----VNDDPETLAALMRAFVEC  257 (321)
T ss_pred             HHHcCCc-EEEEecCCC----------hhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC----CCCCHHHHHHHHHHHHhc
Confidence            6678843 555544322          1233567788999999999987643322111    124678899999999999


Q ss_pred             CCC--EEEEcCCC-CC----CCHHHHHHHHHHHHHhcCC
Q 014369          290 GCF--EISLGDTI-GV----GTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       290 Gad--~I~l~DT~-G~----~~P~~v~~li~~l~~~~p~  321 (426)
                      |+.  .+...|-+ |.    ..+++..++++.+++.+++
T Consensus       258 gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g  296 (321)
T TIGR03822       258 RIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG  296 (321)
T ss_pred             CCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence            986  55666766 32    4567889999999998875

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=93.12  E-value=2  Score=43.72  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--------cCCCCCCCHHH
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--------GDTIGVGTPGT  307 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--------~DT~G~~~P~~  307 (426)
                      ..++.++.+.++.   ++.+..+.++|..         .+++.+.++++.+.++|+|.|.|        .+..|...+..
T Consensus        85 g~d~~~~~i~~~~---~~~~~pvi~sI~g---------~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~  152 (334)
T PRK07565         85 GPEEYLELIRRAK---EAVDIPVIASLNG---------SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQR  152 (334)
T ss_pred             CHHHHHHHHHHHH---HhcCCcEEEEecc---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHH
Confidence            3455555444322   2235666655531         34678889999999999998887        23345555566


Q ss_pred             HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       308 v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +.++++.+++... .||.+-.=-+...-..-+.++.++|++.|..+
T Consensus       153 ~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        153 YLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             HHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence            8899999998764 35666654343322344445568999988653

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=93.06  E-value=6.7  Score=40.25  Aligned_cols=160  Identities=12%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-c--CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ++.+.+-|+..+-+.++....+...+-+.+.++.++.+.+.++.+++ .  |+.++.-++.     + ...+++...+.+
T Consensus        76 ~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~-----~-R~~~~e~~~e~~  149 (345)
T cd01321          76 LEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYAT-----L-RNFNDSEIKESM  149 (345)
T ss_pred             HHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEe-----c-CCCCHHHHHHHH
Confidence            45667779887777765443343334578999999998877777643 3  4555533332     1 123566655655


Q ss_pred             HHHHhC---C---CCEEEEcCCCCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcC--cH-HHHHHHHHHcCCCEEeec
Q 014369          284 KELHDM---G---CFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QS-LPNILISLQMGISTVDCS  353 (426)
Q Consensus       284 ~~l~~~---G---ad~I~l~DT~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--lA-~ANaLaAl~aGa~~VD~S  353 (426)
                      +.+.++   .   +-.|-|+-.-... .|..+...++..++.-++.++.+|+=..-+  .. ..|...|+..|+++|.=.
T Consensus       150 ~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG  229 (345)
T cd01321         150 EQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHG  229 (345)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccc
Confidence            555443   1   2233333222122 467888888888876444679999976653  32 358888889999998544


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       354 v~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +.-+-             -++++..|+..++.
T Consensus       230 ~~~~~-------------dp~ll~~l~~~~I~  248 (345)
T cd01321         230 FALPK-------------HPLLMDLVKKKNIA  248 (345)
T ss_pred             cccCc-------------CHHHHHHHHHcCCe
Confidence            43221             16777788765553

>PRK06294 coproporphyrinogen III oxidase; Provisional

Probab=93.05  E-value=2  Score=44.35  Aligned_cols=107  Identities=11%  Similarity=0.088  Sum_probs=70.9

Q ss_pred             HHHHHHhHhcCCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-
Q 014369          183 RDVMEAVRDLEGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-  257 (426)
Q Consensus       183 ~~v~~~i~~~~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-  257 (426)
                      .++++.++..+...+++-+ |   +.+.++...++|+.+|.+.+..-+-.....+|+..  ..+.+.++++.+++.|+. 
T Consensus        78 ~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~  155 (370)
T PRK06294         78 QDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSN  155 (370)
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCe
Confidence            3444444433455555544 3   24567888899999999987443333344455422  244456778889999996 


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          258 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       258 v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      |.+.++  +|.|..   +.+.+.+-++.+.+++++.|.+
T Consensus       156 v~~Dli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~  189 (370)
T PRK06294        156 LSIDLI--YGLPTQ---SLSDFIVDLHQAITLPITHISL  189 (370)
T ss_pred             EEEEee--cCCCCC---CHHHHHHHHHHHHccCCCeEEE
Confidence            776665  677754   5778888888999999987765

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=93.03  E-value=1.4  Score=44.15  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE-EcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS-LGDT-IGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~-l~DT-~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++++.|++.|+-|-+     |.+     .+.+.+..+++++.+.+...|- +... .-.+....+..++..+.+....
T Consensus         6 ~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V   75 (286)
T PRK12738          6 TKYLLQDAQANGYAVPA-----FNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM   75 (286)
T ss_pred             HHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC
Confidence            56788899999987742     322     3578899999999999987444 3322 2234456678888888887753


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  357 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  357 (426)
                       |+.+|  =|.|.....+..|+++|.+  .+|+|-..+
T Consensus        76 -PValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~  110 (286)
T PRK12738         76 -PLALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPF  110 (286)
T ss_pred             -CEEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence             56655  5788889999999999998  668886644

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=92.98  E-value=9.4  Score=37.05  Aligned_cols=204  Identities=19%  Similarity=0.144  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEecc
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      ..+-.++++.+.+.|++.|=+--.. ....-+  . ..++.+.+++..++++.+-  +++.++++.+++.|++.|.+...
T Consensus        29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~--~-~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~  105 (253)
T PRK02083         29 AGDPVELAKRYNEEGADELVFLDITASSEGRD--T-MLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA  105 (253)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEEeCCcccccCc--c-hHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence            3456789999999999877765322 111111  1 2334444443334444432  36889999999999999866522


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEe-----------eecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSC-----------VVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G-~~v~~~v~~-----------~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .   +          +..+.+.++.   +..| -.+.+.+-+           ....+.  ..+...+.++++.+.+.|+
T Consensus       106 ~---l----------~~p~~~~ei~---~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~g~  167 (253)
T PRK02083        106 A---V----------ANPELISEAA---DRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR--KPTGLDAVEWAKEVEELGA  167 (253)
T ss_pred             H---h----------hCcHHHHHHH---HHcCCCCEEEEEEeccCCCCCCEEEEEcCCc--eecCCCHHHHHHHHHHcCC
Confidence            1   0          0112222222   2233 122222210           000000  0111244567788889999


Q ss_pred             CEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEE-eecccCCCCCCCCCCCC
Q 014369          292 FEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV-DCSVAGLGGCPYAKGAS  367 (426)
Q Consensus       292 d~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~V-D~Sv~GlGecP~a~gra  367 (426)
                      +.|.+-|  ..|...=.. .++++.+++..+. |+-.-+.-.   ...-...+++ .||+.| -++..          -.
T Consensus       168 ~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~i-pvia~GGv~---s~~d~~~~~~~~G~~gvivg~al----------~~  232 (253)
T PRK02083        168 GEILLTSMDRDGTKNGYD-LELTRAVSDAVNV-PVIASGGAG---NLEHFVEAFTEGGADAALAASIF----------HF  232 (253)
T ss_pred             CEEEEcCCcCCCCCCCcC-HHHHHHHHhhCCC-CEEEECCCC---CHHHHHHHHHhCCccEEeEhHHH----------Hc
Confidence            9998833  444332222 4667777776653 455443211   1123334554 477633 33332          25


Q ss_pred             CcccHHHHHHHHHhCCCCC
Q 014369          368 GNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       368 GNa~lEevv~~L~~lG~~~  386 (426)
                      |..+++++...|++.|+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~  251 (253)
T PRK02083        233 GEITIGELKAYLAEQGIPV  251 (253)
T ss_pred             CCCCHHHHHHHHHHCCCcc
Confidence            6789999999998888764

>TIGR00089 RNA modification enzyme, MiaB family

Probab=92.97  E-value=5.7  Score=41.68  Aligned_cols=144  Identities=14%  Similarity=0.164  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC---CC-CCccccccCHHHHHHHhHhcCCCc---EEEEeCC---hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS-PKWVPQLADARDVMEAVRDLEGAR---LPVLTPN---LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s-~~~~p~~~D~~~v~~~i~~~~~~~---l~~l~~~---~~di~~a~~~  213 (426)
                      ..+.+..++-++.|.+.|++.|-+...   .- .++. ......++++.+...++..   +..+.+.   .+-++...++
T Consensus       167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~-~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~  245 (429)
T TIGR00089       167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLK-GETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAEN  245 (429)
T ss_pred             CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCC-CCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhC
Confidence            578888888889999999998877521   11 1110 0123456666666554432   2222232   3345666666


Q ss_pred             C--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       214 G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      |  ...+++.+ +.|+--++ .+|+.  ...+.+.++++.+++.|  +.+.++++  +|.|..   +++.+.+.++.+.+
T Consensus       246 ~~~~~~l~igiES~s~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--vG~PgE---T~ed~~~tl~~i~~  317 (429)
T TIGR00089       246 PKVCKHLHLPVQSGSDRILK-RMNRK--YTREEYLDIVEKIRAKIPDAAITTDII--VGFPGE---TEEDFEETLDLVEE  317 (429)
T ss_pred             CCccCceeeccccCChHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence            4  77788865 55664444 35553  23456678888888888  66665555  677876   46777777888888


Q ss_pred             CCCCEEEE
Q 014369          289 MGCFEISL  296 (426)
Q Consensus       289 ~Gad~I~l  296 (426)
                      .+.+.+.+
T Consensus       318 ~~~~~~~~  325 (429)
T TIGR00089       318 VKFDKLHS  325 (429)
T ss_pred             cCCCEeec
Confidence            88876663

This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.94  E-value=5.4  Score=42.12  Aligned_cols=144  Identities=17%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC---CC-CCc-cccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS-PKW-VPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s-~~~-~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~  212 (426)
                      ..+.+..++=++.|.+.|++.|.+.-.   .. .+. -+......++++.+..+++.   ++....|.   .+-++...+
T Consensus       175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~  254 (444)
T PRK14325        175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYAD  254 (444)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHc
Confidence            468888888888898999998876421   11 000 01112345666666554443   33322232   233555556


Q ss_pred             cC--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       213 ~G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      .|  ...+++.+ +.|+.-++ .+++.  ...+.+.++++.++++  |+.+.++++  +|.|..+   .+.+.+..+.+.
T Consensus       255 ~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgET---~ed~~~tl~~i~  326 (444)
T PRK14325        255 LPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGET---DEDFEATMKLIE  326 (444)
T ss_pred             CCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCCC---HHHHHHHHHHHH
Confidence            64  67888876 45554433 34443  2345667888888887  667776666  6778664   577777777777


Q ss_pred             hCCCCEEE
Q 014369          288 DMGCFEIS  295 (426)
Q Consensus       288 ~~Gad~I~  295 (426)
                      +.+.+.+.
T Consensus       327 ~~~~~~~~  334 (444)
T PRK14325        327 DVGFDQSF  334 (444)
T ss_pred             hcCCCeee
Confidence            88877654

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=92.91  E-value=2.3  Score=43.20  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--------cCCCCCCCHHH
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--------GDTIGVGTPGT  307 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--------~DT~G~~~P~~  307 (426)
                      ..+..++++.+..   ++.+..+.++|.         ..+++.+.++++.+.++|+|.|.|        ++-.|...++.
T Consensus        83 g~~~~~~~i~~~~---~~~~~pvi~si~---------g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~  150 (325)
T cd04739          83 GPEEYLELIRRAK---RAVSIPVIASLN---------GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR  150 (325)
T ss_pred             CHHHHHHHHHHHH---hccCCeEEEEeC---------CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHH
Confidence            3445555444321   233566665552         135688889999999999986654        13334444577


Q ss_pred             HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       308 v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +.++++.+++... .||.+-.=-++..-..-+.++.++||+.|..
T Consensus       151 ~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~  194 (325)
T cd04739         151 YLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAAGADGLVL  194 (325)
T ss_pred             HHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence            8899999998764 3566655444454555566678899997754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK05904 coproporphyrinogen III oxidase; Provisional

Probab=92.90  E-value=7.4  Score=40.01  Aligned_cols=107  Identities=7%  Similarity=0.044  Sum_probs=70.3

Q ss_pred             HHHHHHhHh-c-CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 014369          183 RDVMEAVRD-L-EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  256 (426)
Q Consensus       183 ~~v~~~i~~-~-~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~  256 (426)
                      +++++.+++ . ++..+++-+ |   +.+.++...++|+.+|.+.+..-+-..-..+|+.  ...+++.++++.+++.|+
T Consensus        76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~  153 (353)
T PRK05904         76 DILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGI  153 (353)
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Confidence            344444443 2 334555544 3   2466788889999999998744433334445553  234556688889999998


Q ss_pred             c-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          257 P-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       257 ~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      . +.+.++  +|.|..   +.+.+.+.++.+.+++++.|.+
T Consensus       154 ~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is~  189 (353)
T PRK05904        154 YNISCDFL--YCLPIL---KLKDLDEVFNFILKHKINHISF  189 (353)
T ss_pred             CcEEEEEe--ecCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            6 776666  666753   5678888888888999876643

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]

Probab=92.82  E-value=5.4  Score=39.56  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHhCC-CCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCC
Q 014369          143 NTVPTGVKVELIRRLVSSG-LPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAK  216 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~G-v~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~  216 (426)
                      ..+++++..++...+.+.| +..+-++..     .|-+ .|..++++.++...+..+...+.    ..+-++...++|++
T Consensus        46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gG-----EPll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~  120 (347)
T COG0535          46 GELSTEEDLRVIDELAELGEIPVVIFTGG-----EPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLD  120 (347)
T ss_pred             cccCHHHHHHHHHHHHHcCCeeEEEEeCC-----CccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCc
Confidence            4567777778999999999 666555431     1222 35566666666444444443332    13567777889999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .|.|.+-..+.-. +..-...+.+++++.+.++.+++.|+.+..++..       .+...+.+.++++.+.+.|++.+.+
T Consensus       121 ~v~iSid~~~~e~-hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n~~~l~~~~~~~~~~g~~~~~~  192 (347)
T COG0535         121 YVSISLDGLDPET-HDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKINYDELPEIADLAAELGVDELNV  192 (347)
T ss_pred             EEEEEecCCChhh-hhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCcHHHHHHHHHHHHHcCCCEEEE
Confidence            9999875433211 0111122456788889999999999875543332       3456788889999999999875555

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=92.81  E-value=1.4  Score=46.75  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      +.-.+-+..|.++|++.|++-.--..     .....+.++.+++ .|++.+.+ -+-+.++.+.++++|+|.|.+.+...
T Consensus       223 ~~~~~r~~~L~~aG~d~I~vd~a~g~-----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G  297 (450)
T TIGR01302       223 EFDKERAEALVKAGVDVIVIDSSHGH-----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG  297 (450)
T ss_pred             hhHHHHHHHHHHhCCCEEEEECCCCc-----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence            34567778999999999999652110     0112344444443 35655444 34578899999999999998865211


Q ss_pred             hH-HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369          226 EA-FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT  304 (426)
Q Consensus       226 d~-~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~  304 (426)
                      -+ .-+...++... .+..+.++.+++++.+++|.         ++.+-.++.++.+    +.++||+.+-+.-..    
T Consensus       298 ~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvi---------adGGi~~~~di~k----Ala~GA~~V~~G~~~----  359 (450)
T TIGR01302       298 SICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVI---------ADGGIRYSGDIVK----ALAAGADAVMLGSLL----  359 (450)
T ss_pred             cCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEE---------EeCCCCCHHHHHH----HHHcCCCEEEECchh----
Confidence            00 00111122222 24556677788888887764         2445445555443    335899999876432    


Q ss_pred             HHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHH
Q 014369          305 PGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI  341 (426)
Q Consensus       305 P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLa  341 (426)
                              .. -.+.|...+   +-+.-.-+|||...++.
T Consensus       360 --------a~-~~e~pg~~~~~~g~~~k~yrgm~s~~a~~  390 (450)
T TIGR01302       360 --------AG-TTESPGEYEIINGRRYKQYRGMGSLGAMT  390 (450)
T ss_pred             --------hc-CCcCCCceEEECCEEEEEEeccchHHHHh
Confidence                    11 123454322   23445568999766554

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=92.79  E-value=9.4  Score=36.54  Aligned_cols=198  Identities=14%  Similarity=0.141  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      ..-+++++.+.+.|++.+.+=-.. +...  ...+...+.+..+. .+..+.+  -.+..++++.++++|++.|++....
T Consensus        32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~--~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~  108 (241)
T PRK13585         32 GDPVEVAKRWVDAGAETLHLVDLDGAFEG--ERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA  108 (241)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEechhhhcC--CcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            356789999999999987653221 1100  01223333333333 2344443  2367899999999999999885321


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCC--C-CC-CHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVE--G-AI-PPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~--~-r~-~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      -             +..+.+.++++.   .|. .+.+.+..- +.+..  + .. ....+.++++.+.++|++.|.+-|+
T Consensus       109 ~-------------~~~~~~~~i~~~---~g~~~i~~sid~~-~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~  171 (241)
T PRK13585        109 V-------------ENPEIVRELSEE---FGSERVMVSLDAK-DGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV  171 (241)
T ss_pred             h-------------hChHHHHHHHHH---hCCCcEEEEEEee-CCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence            1             011223333333   332 222222210 00000  0 00 1124566778888999999999776


Q ss_pred             --CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 014369          300 --IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVY  377 (426)
Q Consensus       300 --~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~  377 (426)
                        .|...+.. .++++.+++.++. |+.+-+.=.   ...++....++||+.|-+.-.-+         .+.-.+++++.
T Consensus       172 ~~~g~~~g~~-~~~i~~i~~~~~i-Pvia~GGI~---~~~di~~~~~~Ga~gv~vgsa~~---------~~~~~~~~~~~  237 (241)
T PRK13585        172 DVEGLLEGVN-TEPVKELVDSVDI-PVIASGGVT---TLDDLRALKEAGAAGVVVGSALY---------KGKFTLEEAIE  237 (241)
T ss_pred             cCCCCcCCCC-HHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCCEEEEEHHHh---------cCCcCHHHHHH
Confidence              55555432 3457777777653 555554322   13455566788999764432222         23345666655


Q ss_pred             HH
Q 014369          378 ML  379 (426)
Q Consensus       378 ~L  379 (426)
                      .+
T Consensus       238 ~~  239 (241)
T PRK13585        238 AV  239 (241)
T ss_pred             Hh
Confidence            54

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=92.72  E-value=0.45  Score=46.63  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-d~~r~~~~~l~~~~  283 (426)
                      +|+=.....-+|.+-+...++-.+-+        +   .+++.++.++++|+.+.      +|.. .+-......+.++.
T Consensus        28 ~dlLe~ag~yID~~K~g~Gt~~l~~~--------~---~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl   90 (244)
T PF02679_consen   28 EDLLESAGDYIDFLKFGWGTSALYPE--------E---ILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYL   90 (244)
T ss_dssp             HHHHHHHGGG-SEEEE-TTGGGGSTC--------H---HHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHhhhhccEEEecCceeeecCH--------H---HHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHH
Confidence            44444555678999998877665332        2   35688889999998876      2210 01011234566788


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEeCC-------CcCcHHHHHHHHHHcCCCEE--eec
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD-------TYGQSLPNILISLQMGISTV--DCS  353 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~~i~~H~HN-------d~GlA~ANaLaAl~aGa~~V--D~S  353 (426)
                      +.+.++|.+.|-|.|..--+.+.+-.++|+.+++. +-. .-++.-.+       |...-+-.+...++|||+.|  ++-
T Consensus        91 ~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v-~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar  169 (244)
T PF02679_consen   91 EECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV-LSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR  169 (244)
T ss_dssp             HHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE-EEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred             HHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE-eecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            88889999999999999999999999999999876 321 23333322       36677888999999999965  433


Q ss_pred             ---ccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          354 ---VAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       354 ---v~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                         -.|+=+      ..|+...+.+...++.++
T Consensus       170 EsG~~Gi~~------~~g~~r~d~v~~i~~~~~  196 (244)
T PF02679_consen  170 ESGKGGIYD------NDGEVRTDLVEKIIERLG  196 (244)
T ss_dssp             TT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred             ccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence               226666      689999998888887654

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.71  E-value=2.8  Score=44.37  Aligned_cols=146  Identities=12%  Similarity=0.070  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC-CCC--CccccccCHHHHHHHhHhcC--CCcEEEEeCC---hhhHHHHHHc--
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSP--KWVPQLADARDVMEAVRDLE--GARLPVLTPN---LKGFEAAIAA--  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~--~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~~---~~di~~a~~~--  213 (426)
                      ..+.+..++-++.|.+.|++.|-+.-. ...  ...|...+..++++.+....  .+++....|.   .+-++...+.  
T Consensus       166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~  245 (440)
T PRK14334        166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPA  245 (440)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCc
Confidence            457888888888899999988876421 000  00011224566777665432  2333333232   3445666664  


Q ss_pred             CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          214 GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       214 Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      |...+++.+ +.|+.-++ .+++..  ..+.+.++++.+++.|..+.+.....+|.|..   +.+.+.+.++.+.+++.+
T Consensus       246 g~~~l~igvQSgs~~vLk-~m~R~~--~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ed~~~tl~~i~~l~~~  319 (440)
T PRK14334        246 VCEYIHLPVQSGSDRVLR-RMAREY--RREKYLERIAEIREALPDVVLSTDIIVGFPGE---TEEDFQETLSLYDEVGYD  319 (440)
T ss_pred             CCCeEEeccccCCHHHHH-HhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CHHHHHHHHHHHHhcCCC
Confidence            478888886 44454333 334321  23455677788888887654444445787865   467777778788888877


Q ss_pred             EEE
Q 014369          293 EIS  295 (426)
Q Consensus       293 ~I~  295 (426)
                      .+.
T Consensus       320 ~i~  322 (440)
T PRK14334        320 SAY  322 (440)
T ss_pred             Eee
Confidence            554

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=92.69  E-value=1.5  Score=43.77  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcC-CCCCCCHHHHHHHHHHHHHhcCCc
Q 014369          245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE  322 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~D-T~G~~~P~~v~~li~~l~~~~p~~  322 (426)
                      +++++.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+.. +........+..++..+.+.... 
T Consensus         2 k~lL~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~V-   70 (276)
T cd00947           2 KELLKKAREGGYAVGA-----FNI-----NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASV-   70 (276)
T ss_pred             HHHHHHHHHCCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-
Confidence            4677889999987653     321     3568889999999999877 444443 33334456788888888777653 


Q ss_pred             eEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369          323 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  358 (426)
Q Consensus       323 ~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  358 (426)
                      |+.+|.  |.|.-......|+++|.+  .+|+|-..+-
T Consensus        71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~e  106 (276)
T cd00947          71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFE  106 (276)
T ss_pred             CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence            566654  677778999999999998  6688876443

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=92.63  E-value=0.39  Score=46.74  Aligned_cols=116  Identities=18%  Similarity=0.308  Sum_probs=74.6

Q ss_pred             HHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          184 DVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       184 ~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      .+...++.+  .+++++.+. |+.+.++.|.+.|++.|-++...   +..+ ++. ..++.++++..++++|+++|+.|.
T Consensus       111 ~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG~---YA~a-~~~~~~~~el~~i~~aa~~A~~lGL~Vn  186 (237)
T TIGR00559       111 KLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEIHTGP---YANA-YNKKEMAEELQRIVKASVHAHSLGLKVN  186 (237)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcC-CCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence            344444433  467777776 78899999999999999998642   1111 122 224459999999999999999886


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----cCCCCCCCHHHHHHHHHHHH
Q 014369          260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTIGVGTPGTVVPMLEAVM  316 (426)
Q Consensus       260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l-----~DT~G~~~P~~v~~li~~l~  316 (426)
                      +          +.-.+.+.+..+++   .-+ ..+++|     ++.+=++.+..|++|.+.++
T Consensus       187 A----------GHgLny~Nv~~i~~---~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~  236 (237)
T TIGR00559       187 A----------GHGLNYHNVKYFAE---ILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK  236 (237)
T ss_pred             c----------CCCCCHHhHHHHHh---CCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            2          12345566555543   223 566665     44555556666666665543

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=92.59  E-value=2.1  Score=42.86  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcC-CCCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGD-TIGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~D-T~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      +.++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+... |.+.- +..++....+..++..+.+..+.
T Consensus         6 ~~~~l~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V   75 (284)
T PRK12737          6 TKNMLKKAQAEGYAVPA-----FNI-----HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI   75 (284)
T ss_pred             HHHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC
Confidence            56788899999987653     322     35789999999999999774 44433 22233445677778888777754


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  359 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  359 (426)
                       |+.+|  =|.|.-......|+++|.+  .+|+|-..+-+
T Consensus        76 -PValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp~ee  112 (284)
T PRK12737         76 -PLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE  112 (284)
T ss_pred             -CEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHH
Confidence             56654  5777788999999999998  66988765443

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=92.57  E-value=4.1  Score=36.36  Aligned_cols=113  Identities=16%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      |.-++..|.+.|+++|..|..+++         +++.                     ++|.+.+++.|.+..-..    
T Consensus        18 k~iv~~~l~~~GfeVi~LG~~v~~---------e~~v---------------------~aa~~~~adiVglS~l~~----   63 (134)
T TIGR01501        18 NKILDHAFTNAGFNVVNLGVLSPQ---------EEFI---------------------KAAIETKADAILVSSLYG----   63 (134)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCH---------HHHH---------------------HHHHHcCCCEEEEecccc----
Confidence            345677889999999999976543         3333                     466667778777753211    


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHH
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVV  309 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~  309 (426)
                               ..+..+.+++++.++.|+.-.. +.  +|.-  --.+++...+..+++.++|++.+.=+.|    .|+++.
T Consensus        64 ---------~~~~~~~~~~~~l~~~gl~~~~-vi--vGG~--~vi~~~d~~~~~~~l~~~Gv~~vF~pgt----~~~~iv  125 (134)
T TIGR01501        64 ---------HGEIDCKGLRQKCDEAGLEGIL-LY--VGGN--LVVGKQDFPDVEKRFKEMGFDRVFAPGT----PPEVVI  125 (134)
T ss_pred             ---------cCHHHHHHHHHHHHHCCCCCCE-EE--ecCC--cCcChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence                     1134456677777888774221 21  2211  0134455555566778889888887777    566666


Q ss_pred             HHHHH
Q 014369          310 PMLEA  314 (426)
Q Consensus       310 ~li~~  314 (426)
                      ..++.
T Consensus       126 ~~l~~  130 (134)
T TIGR01501       126 ADLKK  130 (134)
T ss_pred             HHHHH
Confidence            65554

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PLN02623 pyruvate kinase

Probab=92.55  E-value=13  Score=40.99  Aligned_cols=248  Identities=11%  Similarity=0.083  Sum_probs=140.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeCChh---hHHHHHHcCCCEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLK---GFEAAIAAGAKEVA  219 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~~~~---di~~a~~~Gv~~V~  219 (426)
                      .++..++..| +...+.|+|.|=+.|--+.      .|-.++.+.++.. ..+.+.+.+-+.+   .++..++ |+|.|.
T Consensus       275 ~lTekD~~di-~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgIm  346 (581)
T PLN02623        275 SITEKDWEDI-KFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAM  346 (581)
T ss_pred             CCCHHHHHHH-HHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEE
Confidence            3666676664 6677899999888763222      2334444444432 2344455554544   4555555 899776


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v----~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      |.  -.|+-.+.  +  .++.....+++++.|+++|..+.+.-    ++.+ .|..+|+   ++.+++ .+...|+|.|.
T Consensus       347 Ig--rgDLgvel--g--~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTRA---Ev~Dva-~av~dG~d~vm  415 (581)
T PLN02623        347 VA--RGDLGAEL--P--IEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTRA---EVSDIA-IAVREGADAVM  415 (581)
T ss_pred             EC--cchhhhhc--C--cHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCch---hHHHHH-HHHHcCCCEEE
Confidence            64  34543332  2  36777778899999999999886321    1111 2333444   444433 34568999888


Q ss_pred             Ec-CCCCCCCHHHHHHHHHHHHHhcCC-ce-------EEEEeCCC--cCcHHHHHHHHHHcCCCEEeecccCCCC-----
Q 014369          296 LG-DTIGVGTPGTVVPMLEAVMAVVPV-EK-------LAVHLHDT--YGQSLPNILISLQMGISTVDCSVAGLGG-----  359 (426)
Q Consensus       296 l~-DT~G~~~P~~v~~li~~l~~~~p~-~~-------i~~H~HNd--~GlA~ANaLaAl~aGa~~VD~Sv~GlGe-----  359 (426)
                      |. ||.=--.|.+..+++..+..+.-. ..       +.-+..++  --.|.+...+|-..++.+|--|-.|--.     
T Consensus       416 Ls~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr  495 (581)
T PLN02623        416 LSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSH  495 (581)
T ss_pred             ecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHh
Confidence            87 666667899888888887754321 00       00111111  2355556667778888888888777532     


Q ss_pred             C-CCCCCCCCcccHHHHHHHHHhC-CCCC-----CcChhhHHHHHHHHHHHhCCCCCCC
Q 014369          360 C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGSK  411 (426)
Q Consensus       360 c-P~a~graGNa~lEevv~~L~~l-G~~~-----~iDl~~L~~la~~v~~~~g~~~~~~  411 (426)
                      + |-.|- -+-++-+.++..|.-+ |+.+     .-|.+.+...+....+..|.--+..
T Consensus       496 ~RP~~pI-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD  553 (581)
T PLN02623        496 YRPSGTI-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGE  553 (581)
T ss_pred             hCCCCCE-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence            0 11111 2234446666666653 6532     2255666666655555566543333

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=92.53  E-value=2.8  Score=45.12  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .+-++...++|+.+|.|.+...+......+|+.  ...+++.++++.++++|+ .+.+.++  +|.|..   +.+.+.+.
T Consensus       269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~t  341 (488)
T PRK08207        269 EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKHT  341 (488)
T ss_pred             HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHHH
Confidence            456788889999999988754443333345553  234556688889999999 5666666  677765   47888888


Q ss_pred             HHHHHhCCCCEEEEcCC--------------CCCCCHHHHHHHHHHHHHh
Q 014369          283 AKELHDMGCFEISLGDT--------------IGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT--------------~G~~~P~~v~~li~~l~~~  318 (426)
                      ++.+.+++++.|.+--.              .....+++..+++....+.
T Consensus       342 l~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~  391 (488)
T PRK08207        342 LEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW  391 (488)
T ss_pred             HHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence            88999999987775422              2334455555665555544

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=92.50  E-value=2.1  Score=43.03  Aligned_cols=136  Identities=13%  Similarity=0.218  Sum_probs=86.5

Q ss_pred             hhHHHHHHcCCCEEEEec-cCC-hHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFA-SAS-EAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~-~~S-d~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -..+.+.++|.+-+.+.= +++ -.+-.--. -.+.++.++.++++++.   -.++|.+.+-       .+--++..+.+
T Consensus        28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r   97 (292)
T PRK11320         28 YHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIAR   97 (292)
T ss_pred             HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHH
Confidence            344566678888766641 111 00000011 23677888877776554   3577765443       33337899999


Q ss_pred             HHHHHHhCCCCEEEEcCCC-----C------CCCHHHHHHHHHHHHHhcCCceEEEEeC------CCcCcHHHHHHHHHH
Q 014369          282 VAKELHDMGCFEISLGDTI-----G------VGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQ  344 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~-----G------~~~P~~v~~li~~l~~~~p~~~i~~H~H------Nd~GlA~ANaLaAl~  344 (426)
                      .++.+.++|+..|.|-|.+     |      +..++++..-|++.++.-.+..+-+=.-      +.+--|+.-+.+-.+
T Consensus        98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e  177 (292)
T PRK11320         98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE  177 (292)
T ss_pred             HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH
Confidence            9999999999999999987     3      3456777777777776542222333222      234567888888999


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      ||||.|
T Consensus       178 AGAD~i  183 (292)
T PRK11320        178 AGADMI  183 (292)
T ss_pred             cCCCEE
Confidence            999966

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=92.45  E-value=1.9  Score=43.04  Aligned_cols=69  Identities=16%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      ..++ .-++.+.++|+|.|   |-.....|  ..+++..+|..+ +.+|-.-+- |    +..++.|+++|+++|-+|+.
T Consensus        74 ~~~~-~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-t----leEal~a~~~Gad~I~TTl~  141 (283)
T cd04727          74 IGHF-VEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-N----LGEALRRISEGAAMIRTKGE  141 (283)
T ss_pred             hhHH-HHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-C----HHHHHHHHHCCCCEEEecCC
Confidence            3444 44788999999999   87777888  688999999987 333333322 2    57889999999999999998


Q ss_pred             C
Q 014369          356 G  356 (426)
Q Consensus       356 G  356 (426)
                      |
T Consensus       142 g  142 (283)
T cd04727         142 A  142 (283)
T ss_pred             C
Confidence            5

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=92.41  E-value=1.6  Score=43.76  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      +.++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+... ..++-...+..++..+.+....
T Consensus         6 ~k~il~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~V   75 (284)
T PRK09195          6 TKQMLNNAQRGGYAVPA-----FNI-----HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHH   75 (284)
T ss_pred             HHHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCC
Confidence            56788899999987642     321     3678999999999999876 4444432 2334445678888888877753


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  358 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  358 (426)
                       |+.+|  =|.|.-......|+++|.+  .+|+|-..+-
T Consensus        76 -PV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l~~e  111 (284)
T PRK09195         76 -PLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHLPFA  111 (284)
T ss_pred             -CEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCCCHH
Confidence             56655  5777789999999999998  6688876543

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=92.41  E-value=1.8  Score=44.59  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHHHHHHHhcC
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li~~l~~~~p  320 (426)
                      .+.++++.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+.... .++-...+..++..+.+..+
T Consensus         5 ~~k~lL~~A~~~~yAVgA-----fN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~   74 (347)
T PRK09196          5 SLRQLLDHAAEHGYGVPA-----FNV-----NNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP   74 (347)
T ss_pred             cHHHHHHHHHHcCceEEE-----eee-----CCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence            356788899999987753     322     4678999999999999976 55554443 33334567888888877776


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                      .+|+.+|  =|.|........|+++|.+  .+|+|-.
T Consensus        75 ~VPValH--LDHg~~~e~i~~ai~~GftSVMiDgS~l  109 (347)
T PRK09196         75 HIPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLK  109 (347)
T ss_pred             CCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence            4466665  4777788889999999998  6798876

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=92.38  E-value=5.6  Score=40.78  Aligned_cols=136  Identities=20%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             HHHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCc--EEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~--v~~~v~~~fg~pd~~r  273 (426)
                      .++|.++|.|.|.|...        +|+.  ++...+|-+.++=.+.+.++++.+|+. |..  |.+-++..-.  ..+.
T Consensus       143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~--~~~g  220 (353)
T cd02930         143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL--VEGG  220 (353)
T ss_pred             HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc--CCCC
Confidence            35667899999988542        1332  334456778887777788888888874 543  3333332100  1123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---C-------H-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG---T-------P-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~-------P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      .+++...++++.+.++|+|.|.+.  .|..   +       | .....+.+.+++.++. +|..-.--+   ....+..+
T Consensus       221 ~~~~e~~~i~~~Le~~G~d~i~vs--~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~---~~~~a~~~  294 (353)
T cd02930         221 STWEEVVALAKALEAAGADILNTG--IGWHEARVPTIATSVPRGAFAWATAKLKRAVDI-PVIASNRIN---TPEVAERL  294 (353)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeC--CCcCCCCCccccccCCchhhHHHHHHHHHhCCC-CEEEcCCCC---CHHHHHHH
Confidence            678899999999999999999882  2321   1       1 1234456777777653 444432211   24666777


Q ss_pred             HHcC-CCEE
Q 014369          343 LQMG-ISTV  350 (426)
Q Consensus       343 l~aG-a~~V  350 (426)
                      ++.| +|.|
T Consensus       295 i~~g~~D~V  303 (353)
T cd02930         295 LADGDADMV  303 (353)
T ss_pred             HHCCCCChh
Confidence            7776 6654

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=92.32  E-value=10  Score=37.35  Aligned_cols=151  Identities=15%  Similarity=0.141  Sum_probs=91.2

Q ss_pred             HHHHHHcCCCEEEEeccCChHHH----------hh-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASASEAFS----------KS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~----------~~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r  273 (426)
                      ++...+.|+|.|-+-+|.||...          ++ .-|.+.++.+    +.++..|+.  .+++.  +++.+ .|.- .
T Consensus        30 ~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv--~m~Y~-Npi~-~  101 (256)
T TIGR00262        30 IKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG--LLTYY-NLIF-R  101 (256)
T ss_pred             HHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE--EEEec-cHHh-h
Confidence            45667789999999999988321          11 2244444444    444555543  55543  33322 1210 1


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                         -=+.++++.+.++|++.|.++|-    .+++..++++.+++.--  .+.+=+-.+.-......+++...|.-++=+ 
T Consensus       102 ---~G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~gl--~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-  171 (256)
T TIGR00262       102 ---KGVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHGV--KPIFLVAPNADDERLKQIAEKSQGFVYLVS-  171 (256)
T ss_pred             ---hhHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCCC--cEEEEECCCCCHHHHHHHHHhCCCCEEEEE-
Confidence               12245677888999999999996    56788888888877532  244444444444555566666666666544 


Q ss_pred             ccCCCCCCCCCCCC--CcccHHHHHHHHHh
Q 014369          354 VAGLGGCPYAKGAS--GNVATEDVVYMLSG  381 (426)
Q Consensus       354 v~GlGecP~a~gra--GNa~lEevv~~L~~  381 (426)
                      +.|..+      ..  =+..+.+.+..+++
T Consensus       172 ~~G~TG------~~~~~~~~~~~~i~~lr~  195 (256)
T TIGR00262       172 RAGVTG------ARNRAASALNELVKRLKA  195 (256)
T ss_pred             CCCCCC------CcccCChhHHHHHHHHHh
Confidence            457665      22  23567777777775

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=92.23  E-value=1.6  Score=43.67  Aligned_cols=120  Identities=16%  Similarity=0.159  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcC
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .++++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+... ..+.--..+..++..+.+..+
T Consensus         5 ~~k~iL~~A~~~~yaV~A-----fNv-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~   74 (284)
T PRK12857          5 TVAELLKKAEKGGYAVGA-----FNC-----NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS   74 (284)
T ss_pred             cHHHHHHHHHHcCCeEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence            356788889999987653     321     3568899999999999876 4555443 223333556777777777765


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      . |+.+|  =|.|.-......|+++|.+  .+|+|-..+-+        -..-|-+++.+.+..|
T Consensus        75 V-PValH--LDH~~~~e~i~~ai~~GftSVM~DgS~lp~ee--------Ni~~T~~vv~~Ah~~g  128 (284)
T PRK12857         75 V-PVALH--LDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE--------NIALTKKVVEIAHAVG  128 (284)
T ss_pred             C-CEEEE--CCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH--------HHHHHHHHHHHHHHcC
Confidence            4 56655  5777788899999999998  67999886655        2355667777776444

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.22  E-value=2.1  Score=45.42  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec-----CCCCCccccccCHHHHHHHhHhc-CCCcE--EEEeCC---hhhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS-----FVSPKWVPQLADARDVMEAVRDL-EGARL--PVLTPN---LKGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-----~~s~~~~p~~~D~~~v~~~i~~~-~~~~l--~~l~~~---~~di~~a~~  212 (426)
                      ..+.++.++=++.|.+.|++.|.+..     +.....   ..+..++++.+... ++.++  .+..|.   .+-++...+
T Consensus       177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~---~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~  253 (445)
T PRK14340        177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA---GADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAA  253 (445)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC---CchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHh
Confidence            56888888888999999999887741     111111   12345666665432 33443  333342   334555555


Q ss_pred             c--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          213 A--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       213 ~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      .  |...+++.+ +.|+.-++. +|+..  ..+++.++++.+|+.  |+.+..++.  +|.|..+   .+.+.+.++.+.
T Consensus       254 ~~~g~~~l~iglQSgsd~vLk~-m~R~~--t~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgET---~edf~~tl~~~~  325 (445)
T PRK14340        254 RPNICNHIHLPVQSGSSRMLRR-MNRGH--TIEEYLEKIALIRSAIPGVTLSTDLI--AGFCGET---EEDHRATLSLME  325 (445)
T ss_pred             CCCCCCeEEECCCcCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCEEeccEE--EECCCCC---HHHHHHHHHHHH
Confidence            4  688999987 556654443 44432  345667888889988  998887776  6778764   566677777777


Q ss_pred             hCCCCEEE
Q 014369          288 DMGCFEIS  295 (426)
Q Consensus       288 ~~Gad~I~  295 (426)
                      +.+.+.+.
T Consensus       326 ~~~~~~~~  333 (445)
T PRK14340        326 EVRFDSAF  333 (445)
T ss_pred             hcCCCEEe
Confidence            77776554

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=92.13  E-value=3.4  Score=42.70  Aligned_cols=141  Identities=16%  Similarity=0.081  Sum_probs=84.1

Q ss_pred             HHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCc-EEEEEEee--ecCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCV--VGCPVEGA  273 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~-v~~~v~~~--fg~pd~~r  273 (426)
                      ++|.++|.|.|.|...        +|+.  ++.-.+|-|.|+=..-+.++++.+|+. |-. |.+-++..  +.. ..+-
T Consensus       166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~~~G  244 (362)
T PRK10605        166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-VDNG  244 (362)
T ss_pred             HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-CCCC
Confidence            5667899999888532        2332  223336778887777777777777664 322 33333321  000 1122


Q ss_pred             CCHHH-HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEe
Q 014369          274 IPPSK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVD  351 (426)
Q Consensus       274 ~~~~~-l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD  351 (426)
                      .++++ ..++++.+.+.|+|.|.+..-.-...+.-...+.+.+++.++. +|.+-.-.|    ...+..+++.| ||.| 
T Consensus       245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D~V-  318 (362)
T PRK10605        245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLIDAV-  318 (362)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCCEE-
Confidence            46666 7999999999999999887421000111123456778888775 454444333    57788899988 6665 


Q ss_pred             ecccCCCC
Q 014369          352 CSVAGLGG  359 (426)
Q Consensus       352 ~Sv~GlGe  359 (426)
                          |||+
T Consensus       319 ----~~gR  322 (362)
T PRK10605        319 ----AFGR  322 (362)
T ss_pred             ----EECH
Confidence                6664

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=92.12  E-value=4.2  Score=42.87  Aligned_cols=88  Identities=9%  Similarity=-0.017  Sum_probs=63.0

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE-EEEEEeeecCCCCCCCCHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v-~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .+-++...++|+.+|.|.+..-+-.....+|+..  ..+++.++++.+++.|+.+ .+.++  +|.|..   +++.+.+.
T Consensus       141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~~  213 (430)
T PRK08208        141 AEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWMES  213 (430)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            4567888889999999987544333334455532  4556778889999999974 45555  677754   57888888


Q ss_pred             HHHHHhCCCCEEEEcC
Q 014369          283 AKELHDMGCFEISLGD  298 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~D  298 (426)
                      ++.+.+.|++.|.+-.
T Consensus       214 l~~~~~l~~~~is~y~  229 (430)
T PRK08208        214 LDQALVYRPEELFLYP  229 (430)
T ss_pred             HHHHHhCCCCEEEEcc
Confidence            8899999998777654

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=92.11  E-value=1.6  Score=44.26  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCCC-CCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDTI-GVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT~-G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++.+.|++.++-|-+     |.     -.+.+.+..+++++.+.+...| .+.... .++-...+..+++.+.+..+.
T Consensus         5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~   74 (307)
T PRK05835          5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_pred             HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence            56788899999987652     32     1467899999999999987744 443322 234456677788877777763


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      +|+.+|  =|.|.-......|+++|.+  .+|+|-..+-+        -..-|-+++.+.+..|
T Consensus        75 VPValH--LDHg~~~e~i~~ai~~GftSVM~DgS~l~~ee--------Ni~~T~~vve~Ah~~g  128 (307)
T PRK05835         75 IPVALH--LDHGTTFESCEKAVKAGFTSVMIDASHHAFEE--------NLELTSKVVKMAHNAG  128 (307)
T ss_pred             CeEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH--------HHHHHHHHHHHHHHcC
Confidence            466655  5778889999999999998  67999876654        2245666776666433

>PRK07379 coproporphyrinogen III oxidase; Provisional

Probab=92.08  E-value=3.3  Score=43.26  Aligned_cols=107  Identities=11%  Similarity=0.052  Sum_probs=71.3

Q ss_pred             HHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          183 RDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       183 ~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                      .++++.+++.    ++..+++-+ |   +.+.++...++|+.+|.+.+..-+-.....+|+..  ..+++.++++.+++.
T Consensus        86 ~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~  163 (400)
T PRK07379         86 ERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH--RVKDIFAAVDLIHQA  163 (400)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC--CHHHHHHHHHHHHHc
Confidence            4444444421    234555543 3   24567888889999999998544444444555532  244556778889999


Q ss_pred             CCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          255 SIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       255 G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      |+. +.+.++  +|.|..   +.+.+.+-++.+.+++++.|.+
T Consensus       164 G~~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is~  201 (400)
T PRK07379        164 GIENFSLDLI--SGLPHQ---TLEDWQASLEAAIALNPTHLSC  201 (400)
T ss_pred             CCCeEEEEee--cCCCCC---CHHHHHHHHHHHHcCCCCEEEE
Confidence            998 666666  677754   5678888888899999988765

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=92.07  E-value=1.8  Score=46.70  Aligned_cols=70  Identities=11%  Similarity=0.089  Sum_probs=52.3

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .+.++.+.++|++.|.| |+.- .....+.++|+.+++.+|+.+|.+    -...-...+..++++||+.|.+++.
T Consensus       243 ~~~~~~l~~ag~d~i~i-d~a~-G~s~~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g  312 (495)
T PTZ00314        243 IERAAALIEAGVDVLVV-DSSQ-GNSIYQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG  312 (495)
T ss_pred             HHHHHHHHHCCCCEEEE-ecCC-CCchHHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence            67788999999999988 4432 333445788999999998767766    1233346888999999999988654

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=92.06  E-value=6.7  Score=40.13  Aligned_cols=137  Identities=18%  Similarity=0.173  Sum_probs=81.7

Q ss_pred             HHHHHcCCCEEEEecc--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhc-CCc--EEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~~~~--~~~~~s~~e~l~~~~~~v~~Ak~~-G~~--v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|...        +|+..++  ..+|-+.++=.+.+.++++.+|+. |..  |.+-++..-.  ..+-.
T Consensus       148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~--~~~G~  225 (343)
T cd04734         148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED--TEGGL  225 (343)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc--cCCCC
Confidence            4667799998887752        2554433  457888888778888888888875 533  3333432100  01224


Q ss_pred             CHHHHHHHHHHHHhCC-CCEEEEcCC-----------CCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH
Q 014369          275 PPSKVAYVAKELHDMG-CFEISLGDT-----------IGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  340 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~G-ad~I~l~DT-----------~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL  340 (426)
                      ++++..++++.+.++| +|.|.+.--           ...  ..+....++++.+++.+.. +|..-+  ++- ...-+.
T Consensus       226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i-pvi~~G--~i~-~~~~~~  301 (343)
T cd04734         226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL-PVFHAG--RIR-DPAEAE  301 (343)
T ss_pred             CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC-CEEeeC--CCC-CHHHHH
Confidence            6788899999999998 899988311           000  0112234667777777653 343332  111 135566


Q ss_pred             HHHHcC-CCEE
Q 014369          341 ISLQMG-ISTV  350 (426)
Q Consensus       341 aAl~aG-a~~V  350 (426)
                      .+++.| +|.|
T Consensus       302 ~~l~~~~~D~V  312 (343)
T cd04734         302 QALAAGHADMV  312 (343)
T ss_pred             HHHHcCCCCee
Confidence            667765 6655

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=92.04  E-value=5  Score=35.57  Aligned_cols=109  Identities=15%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      |.-++..|.+.|+++|..|..+++         +++.                     ++|.+.+++.|.+..-...   
T Consensus        16 kniv~~~L~~~GfeVidLG~~v~~---------e~~v---------------------~aa~~~~adiVglS~L~t~---   62 (128)
T cd02072          16 NKILDHAFTEAGFNVVNLGVLSPQ---------EEFI---------------------DAAIETDADAILVSSLYGH---   62 (128)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCH---------HHHH---------------------HHHHHcCCCEEEEeccccC---
Confidence            345677888999999999976543         2333                     4667777888877632211   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV  308 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v  308 (426)
                                .+..++++++..++.|+ .+-  +.  .|..-  ..+++...+..++|.++|++.++=++|    .|.++
T Consensus        63 ----------~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~~L~~~Gv~~vf~pgt----~~~~i  122 (128)
T cd02072          63 ----------GEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEKRFKEMGFDRVFAPGT----PPEEA  122 (128)
T ss_pred             ----------CHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHHHHHHcCCCEEECcCC----CHHHH
Confidence                      13445677777777776 322  21  22210  124455556667788899998887777    55555


Q ss_pred             HHH
Q 014369          309 VPM  311 (426)
Q Consensus       309 ~~l  311 (426)
                      ..-
T Consensus       123 ~~~  125 (128)
T cd02072         123 IAD  125 (128)
T ss_pred             HHH
Confidence            443

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=92.04  E-value=3.3  Score=42.10  Aligned_cols=130  Identities=17%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      ++..+.++.|.++|++.|++-+.. .++      ...+.++.+++ .|++.+.+ -+.+.++.+.+.++|+|.|.+....
T Consensus        93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~------~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~  166 (325)
T cd00381          93 EDDKERAEALVEAGVDVIVIDSAHGHSV------YVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP  166 (325)
T ss_pred             hhHHHHHHHHHhcCCCEEEEECCCCCcH------HHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence            445778889999999999986421 211      12344455553 34333332 2345788899999999999874321


Q ss_pred             ChHHHhh-hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          225 SEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       225 Sd~~~~~-~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      ...+... ..+... -.+..+.++.+.+++.+++|.         .+.+-.++..+.+   .+ ++||+.+.+.
T Consensus       167 G~~~~t~~~~g~g~-p~~~~i~~v~~~~~~~~vpVI---------A~GGI~~~~di~k---Al-a~GA~~VmiG  226 (325)
T cd00381         167 GSICTTRIVTGVGV-PQATAVADVAAAARDYGVPVI---------ADGGIRTSGDIVK---AL-AAGADAVMLG  226 (325)
T ss_pred             CcCcccceeCCCCC-CHHHHHHHHHHHHhhcCCcEE---------ecCCCCCHHHHHH---HH-HcCCCEEEec
Confidence            1111010 011111 123445566667777777764         1345455555444   33 4999888663

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=92.01  E-value=2  Score=43.89  Aligned_cols=127  Identities=19%  Similarity=0.259  Sum_probs=73.7

Q ss_pred             EEEEeeecCCCCCC----------CCHHHHHHHHHHHHhCCCC-EEEEcCCCCCCCHH---HHHHHHHHHHHhcCCceEE
Q 014369          260 GYVSCVVGCPVEGA----------IPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPG---TVVPMLEAVMAVVPVEKLA  325 (426)
Q Consensus       260 ~~v~~~fg~pd~~r----------~~~~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~---~v~~li~~l~~~~p~~~i~  325 (426)
                      +++.|.|.+-|++.          .|+|++.+..+...+..-+ .=..=|  |.+.|.   .+.++++++++.=....++
T Consensus       117 CnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlD--GqGEP~lYP~l~~lVqalk~~~~v~vVS  194 (414)
T COG2100         117 CNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLD--GQGEPLLYPHLVDLVQALKEHKGVEVVS  194 (414)
T ss_pred             ccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEec--CCCCCccchhHHHHHHHHhcCCCceEEE
Confidence            45555565545543          4889999999888776432 222334  455563   4566777776652233355


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC
Q 014369          326 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG  405 (426)
Q Consensus       326 ~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g  405 (426)
                      +..|-.. |.---+-+-.+||.++|+.||..+-.              .++-+|  .|.+ .+|++++.++++++.+ +|
T Consensus       195 mQTng~~-L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~~-dYdv~kvle~aE~i~~-a~  255 (414)
T COG2100         195 MQTNGVL-LSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGRK-DYDVKKVLEVAEYIAN-AG  255 (414)
T ss_pred             EeeCcee-ccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCcc-ccCHHHHHHHHHHHHh-CC
Confidence            5554331 22222333348999999999998865              122222  2443 5777777777777766 44


Q ss_pred             CC
Q 014369          406 RP  407 (426)
Q Consensus       406 ~~  407 (426)
                      +.
T Consensus       256 id  257 (414)
T COG2100         256 ID  257 (414)
T ss_pred             CC
Confidence            43

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=91.96  E-value=12  Score=35.75  Aligned_cols=180  Identities=17%  Similarity=0.104  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-+++++.+.+.|++.|=+.-...-... .-.+. ++++.+.+..+.++.+  -.+..++++.+.+.|++.|.+-..  
T Consensus        30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~~n~-~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~--  105 (232)
T TIGR03572        30 GDPVNAARIYNAKGADELIVLDIDASKRG-REPLF-ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTA--  105 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCCcccC-CCCCH-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh--
Confidence            36788999999999996666432211000 00122 3444444323344333  336788999999999998866421  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCC--------CC-CCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCP--------VE-GAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~p--------d~-~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                       .+          +..+.+.++++..   |-+ +.+.+-.--+..        +. .........++++.+.++|++.|.
T Consensus       106 -~l----------~~~~~~~~~~~~~---~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~  171 (232)
T TIGR03572       106 -AL----------ENPDLIEEAARRF---GSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEIL  171 (232)
T ss_pred             -Hh----------cCHHHHHHHHHHc---CCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEE
Confidence             11          1122333333332   322 222222100000        00 011123356788899999999999


Q ss_pred             EcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH-HHHcCCCEE
Q 014369          296 LGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTV  350 (426)
Q Consensus       296 l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa-Al~aGa~~V  350 (426)
                      +-|-  .|.... --.++++.+++..+. ||-.=+.-.   ...-+.. ..+.||+.|
T Consensus       172 i~~i~~~g~~~g-~~~~~~~~i~~~~~i-pvia~GGi~---s~~di~~~l~~~gadgV  224 (232)
T TIGR03572       172 LNSIDRDGTMKG-YDLELIKTVSDAVSI-PVIALGGAG---SLDDLVEVALEAGASAV  224 (232)
T ss_pred             EeCCCccCCcCC-CCHHHHHHHHhhCCC-CEEEECCCC---CHHHHHHHHHHcCCCEE
Confidence            9983  333222 236677777776643 343332221   1222233 234677755

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=91.94  E-value=9.5  Score=40.73  Aligned_cols=123  Identities=16%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHH-----HhCC----CCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHH
Q 014369          145 VPTGVKVELIRRL-----VSSG----LPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIA  212 (426)
Q Consensus       145 f~~~~ki~I~~~L-----~~~G----v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~  212 (426)
                      ++.+.-.+.++.+     .+.|    .|.|-+++...        |++.+...++.+   .+..++.-+.+.+-++++++
T Consensus       102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAle  173 (450)
T PRK04165        102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALE  173 (450)
T ss_pred             CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHH
Confidence            4555555555555     4556    99999997542        334444444433   35667767788899999999


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      +|.+..-+..+++.               +++..+++.|+++|..+.+  +    .+     +.+.+.++.+.+.++|..
T Consensus       174 agad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~----~~-----dl~~L~~lv~~~~~~GI~  227 (450)
T PRK04165        174 VVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K----AP-----NLEELKELVEKLQAAGIK  227 (450)
T ss_pred             hcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E----ch-----hHHHHHHHHHHHHHcCCC
Confidence            99987777766543               3445667778888887753  1    11     268888999999999997


Q ss_pred             EEEEcCCCC
Q 014369          293 EISLGDTIG  301 (426)
Q Consensus       293 ~I~l~DT~G  301 (426)
                      .|.|==..|
T Consensus       228 dIILDPg~g  236 (450)
T PRK04165        228 DLVLDPGTE  236 (450)
T ss_pred             cEEECCCCc
Confidence            776644443

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=91.93  E-value=2.2  Score=41.59  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             ChhhHHHHHHcCCCEEEEe-ccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIF-ASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~-~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +--..+.+.++|.+-+.+. ..++-.+-.--. -.|.+|.++.++++++.+   .++|.+.+-      ..+-.++..+.
T Consensus        18 D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d------~GyG~~~~~v~   88 (238)
T PF13714_consen   18 DALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDAD------TGYGNDPENVA   88 (238)
T ss_dssp             SHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-T------TTSSSSHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEcc------cccCchhHHHH
Confidence            3344556667788876654 111111100001 237788888887777665   577775442      22223489999


Q ss_pred             HHHHHHHhCCCCEEEEcCC-CC-----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCc--------CcHHHHHHHHHHcC
Q 014369          281 YVAKELHDMGCFEISLGDT-IG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY--------GQSLPNILISLQMG  346 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT-~G-----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~--------GlA~ANaLaAl~aG  346 (426)
                      +.++.+.++|+..|.|-|. .|     +..++++..-|++.++...+..+-+=.--|-        --++.-+.+-.++|
T Consensus        89 ~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAG  168 (238)
T PF13714_consen   89 RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAG  168 (238)
T ss_dssp             HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999 34     4467888888888887653322333333332        34566677778999


Q ss_pred             CCEE
Q 014369          347 ISTV  350 (426)
Q Consensus       347 a~~V  350 (426)
                      ||.|
T Consensus       169 AD~i  172 (238)
T PF13714_consen  169 ADMI  172 (238)
T ss_dssp             -SEE
T ss_pred             CCEE
Confidence            9976

...

>PRK07094 biotin synthase; Provisional

Probab=91.92  E-value=14  Score=37.02  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH-HHHHcCCCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL-ISLQMGISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT-~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL-aAl~aGa~~VD  351 (426)
                      .+++.+.+.++.+.+.|+..|.|.+. ........+.++++.+++. ++  +.+|++.  |.-....+ .-.++|++.|.
T Consensus        70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~--l~i~~~~--g~~~~e~l~~Lk~aG~~~v~  144 (323)
T PRK07094         70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LD--VAITLSL--GERSYEEYKAWKEAGADRYL  144 (323)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CC--ceEEEec--CCCCHHHHHHHHHcCCCEEE
Confidence            47899999999999999999999733 2345678899999999886 43  3444432  33223333 33478999988


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHH---HhCCCCC---------CcChhhHHHHHHHHHHHh--CCCCCCCCcccch
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVET---------NVDLRKLMLAGDFINKHL--GRPSGSKTAIALN  417 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L---~~lG~~~---------~iDl~~L~~la~~v~~~~--g~~~~~~~pivG~  417 (426)
                      .++-+.-.==+..-+. ..+.++.+..+   ++.|+.+         +-+.+.+.+..+++.+.-  .+.+.+-.|+-|.
T Consensus       145 ~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgT  223 (323)
T PRK07094        145 LRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDT  223 (323)
T ss_pred             eccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCC
Confidence            7665542100000011 23455555544   4456542         335566666666666532  1234444454454


Q ss_pred             hhh
Q 014369          418 RIA  420 (426)
Q Consensus       418 ~vf  420 (426)
                      -.+
T Consensus       224 pl~  226 (323)
T PRK07094        224 PLK  226 (323)
T ss_pred             Ccc
Confidence            433

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.90  E-value=7.5  Score=37.46  Aligned_cols=144  Identities=15%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCC-CccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      .+-|..|.++|+++|-.|--+.+ -..|..  .+++...+....  .+.+.++.-..++.....|+.+|.+..|-.+-  
T Consensus        57 ~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~--d~ei~~~ie~~~--~v~vvTts~Avv~aL~al~a~ri~vlTPY~~e--  130 (238)
T COG3473          57 ERAALELADAGVDVIVYGCTSGSLIGGPGY--DKEIAQRIEEAK--GVPVVTTSTAVVEALNALGAQRISVLTPYIDE--  130 (238)
T ss_pred             HHHHHhcCccccCEEEEeccceeeecCCch--hHHHHHHHHhcc--CCceeechHHHHHHHHhhCcceEEEeccchhh--
Confidence            44677789999999988732211 001111  245555555433  55666776667777778899999998774432  


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG  306 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~  306 (426)
                                   --...+++..+.|++|.-..+  .|.+|.   +|.+|..+.++++.+..-++|.|.+.     .+-.
T Consensus       131 -------------vn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CTnl  190 (238)
T COG3473         131 -------------VNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CTNL  190 (238)
T ss_pred             -------------hhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-----eecc
Confidence                         113556777889998764333  344443   68999999999999998899999887     3444


Q ss_pred             HHHHHHHHHHHhcC
Q 014369          307 TVVPMLEAVMAVVP  320 (426)
Q Consensus       307 ~v~~li~~l~~~~p  320 (426)
                      +..+.|..+-+..+
T Consensus       191 Rt~eii~~lE~~~G  204 (238)
T COG3473         191 RTFEIIEKLERDTG  204 (238)
T ss_pred             ccHHHHHHHHHHhC
Confidence            55666777766653

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=91.90  E-value=1.6  Score=44.66  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHHHHH
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS  342 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANaLaA  342 (426)
                      +.+++++.+.++.+.+.|+.+|.|.+.... ...+.+.++++.+++.+|.  +.+|+-         +-.|+-....+..
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~  155 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE  155 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence            468999999999999999999999843332 2236889999999999985  445442         3467777776776


Q ss_pred             H-HcCCCEEe
Q 014369          343 L-QMGISTVD  351 (426)
Q Consensus       343 l-~aGa~~VD  351 (426)
                      + ++|++.+.
T Consensus       156 LkeAGld~~~  165 (351)
T TIGR03700       156 LKEAGLDSMP  165 (351)
T ss_pred             HHHcCCCcCC
Confidence            6 68999776

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=91.87  E-value=1.5  Score=45.16  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      +.++++.|++.++-|-+     |.+     .+.+.+..+++++.+.+...| .+.-. ..++-...+..+++.+.+..+.
T Consensus         4 ~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~   73 (347)
T TIGR01521         4 MRQLLDHAAEFGYGVPA-----FNV-----NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH   73 (347)
T ss_pred             HHHHHHHHHHcCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence            45778899999987653     322     467899999999999997744 33332 2333346678888888877763


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                      +|+.+|  =|.|.-......|+++|.+  ++|+|-.
T Consensus        74 VPValH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l  107 (347)
T TIGR01521        74 IPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLR  107 (347)
T ss_pred             CcEEEE--CCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence            467765  5778888999999999998  6798875

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=91.85  E-value=6.9  Score=38.36  Aligned_cols=208  Identities=13%  Similarity=0.091  Sum_probs=112.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhH-HHHHHcCCCEEEE
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGF-EAAIAAGAKEVAI  220 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di-~~a~~~Gv~~V~i  220 (426)
                      ...|+=.+|+.+++   ++|+|.||+..--          .++.+..+.....        ..-.+ .+..+.|+..=-+
T Consensus        15 p~~~sW~erl~~AK---~~GFDFvEmSvDE----------sDeRLaRLDWs~~--------er~~l~~ai~etgv~ipSm   73 (287)
T COG3623          15 PNGFSWLERLALAK---ELGFDFVEMSVDE----------SDERLARLDWSKE--------ERLALVNAIQETGVRIPSM   73 (287)
T ss_pred             cCCCCHHHHHHHHH---HcCCCeEEEeccc----------hHHHHHhcCCCHH--------HHHHHHHHHHHhCCCccch
Confidence            34578888998885   5799999997532          2222322221000        01112 2344667765555


Q ss_pred             eccCChHHHhhhcCC----CHHHHHHHHHHHHHHHHhcCCcEEEEEE--eeecCCCCCCCCHH-------HHHHHHHHHH
Q 014369          221 FASASEAFSKSNINC----SIEDSLVRYRAVAHAAKVLSIPVRGYVS--CVVGCPVEGAIPPS-------KVAYVAKELH  287 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~----s~~e~l~~~~~~v~~Ak~~G~~v~~~v~--~~fg~pd~~r~~~~-------~l~~~~~~l~  287 (426)
                      .+|   .|++..+|.    +++++++-+..+++.|+++|+++. .+.  .++- +   ..|++       -+...++.+.
T Consensus        74 ClS---aHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtI-QLAGYDVYY-E---~~d~eT~~rFi~g~~~a~~lA~  145 (287)
T COG3623          74 CLS---AHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTI-QLAGYDVYY-E---EADEETRQRFIEGLKWAVELAA  145 (287)
T ss_pred             hhh---hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeE-eeccceeee-c---cCCHHHHHHHHHHHHHHHHHHH
Confidence            555   366777766    478899999999999999999753 111  0110 1   12222       2334455556


Q ss_pred             hCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHh----cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe------e----
Q 014369          288 DMGCF-EISLGDTIGVGTPGTVVPMLEAVMAV----VPVEKLAVHLHDTYGQSLPNILISLQMGISTVD------C----  352 (426)
Q Consensus       288 ~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~----~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD------~----  352 (426)
                      ++.+- .+-+.||-=..+-.....+.+.+..-    +|++-=-.-.||       +...=+..|.+.|-      +    
T Consensus       146 ~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~sP~f~vYPDiGNlsaw~n-------dv~~El~lG~~~I~aiHlKDTy~vt  218 (287)
T COG3623         146 RAQVMLAVEIMDTPFMNSISKWLKYDKYINSPWFTVYPDIGNLSAWNN-------DVQSELQLGIDKIVAIHLKDTYAVT  218 (287)
T ss_pred             hhccEEEeeecccHHHHHHHHHHHHHHHhCCCcEEecCCcccHhhhhh-------hHHHHHHcCcCceEEEEeccccccc
Confidence            66654 77888885444444444444444331    243200011122       23344556665432      1    


Q ss_pred             -cccC-CCCCCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369          353 -SVAG-LGGCPYAKGASGNVATEDVVYMLSGLGVETNV  388 (426)
Q Consensus       353 -Sv~G-lGecP~a~graGNa~lEevv~~L~~lG~~~~i  388 (426)
                       +.-| .=.-   |-+.|++.-+++...|+++++...+
T Consensus       219 e~~~GqFrdv---pfGeG~Vdf~~~f~~lk~~ny~gpf  253 (287)
T COG3623         219 ETSPGQFRDV---PFGEGCVDFEECFKTLKQLNYRGPF  253 (287)
T ss_pred             ccCCCccccC---CcCCcchhHHHHHHHHHHhCCCCce
Confidence             1111 0010   1136899999999999988776443

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=91.81  E-value=1.1  Score=44.77  Aligned_cols=119  Identities=15%  Similarity=0.149  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCCCC-HHHHHHHHHHHHHhcC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGT-PGTVVPMLEAVMAVVP  320 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~~~-P~~v~~li~~l~~~~p  320 (426)
                      .+++.+.||+.|+-|-+     |.+     .+.+++..+.+++.+.+...| .+... ..++. -..+..++..+.+.++
T Consensus         6 ~~~ll~~Ake~~yAvpA-----fN~-----~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~   75 (286)
T COG0191           6 MKELLDKAKENGYAVPA-----FNI-----NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG   75 (286)
T ss_pred             HHHHHHHHHHcCCceee-----eee-----cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence            36788899999987752     322     356899999999999987744 33322 22333 4678888888888888


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                       +|+.+  |-|.|....-...|+++|.+  ++|+|...+=|        -..-+.++|.+.+.+|
T Consensus        76 -vPV~l--HlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE--------Ni~~tkevv~~ah~~g  129 (286)
T COG0191          76 -VPVAL--HLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE--------NIAITKEVVEFAHAYG  129 (286)
T ss_pred             -CCEEE--ECCCCCCHHHHHHHHhcCCceEEecCCcCCHHH--------HHHHHHHHHHHHHHcC
Confidence             45665  56889899999999999988  77999998876        2355677887777544

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=91.74  E-value=7.6  Score=38.37  Aligned_cols=43  Identities=9%  Similarity=0.109  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHhCCCCEEE-EcCCCCCCCHHHHHHHHHHHHHh
Q 014369          276 PSKVAYVAKELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~-l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      .+...++++.+.++|+|.+. ++=.....+++++.+.++.+.+.
T Consensus        82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~  125 (289)
T PF00701_consen   82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA  125 (289)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh
Confidence            44555555555555555332 22333344555555555555533

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=91.67  E-value=14  Score=36.12  Aligned_cols=203  Identities=15%  Similarity=0.142  Sum_probs=120.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH---HhHh-cCCCcEEEEeCCh--------------hhH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRD-LEGARLPVLTPNL--------------KGF  207 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~---~i~~-~~~~~l~~l~~~~--------------~di  207 (426)
                      +.++.++-++.+.+.|+|.||+=.-.-    ..+.+.+.+..   .++. .++..+..-+|..              +=+
T Consensus        26 ~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  101 (253)
T PRK02412         26 TLEEVLAEALAISKYDADIIEWRADFL----EKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI  101 (253)
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEEechh----hccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence            345555666777788999999953211    01112233333   3332 3345555444421              114


Q ss_pred             HHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +.+++.| ++.|-|-....+               +.+.++++.+++.|.++.+  ++..   .....+.+.+.++.+.+
T Consensus       102 ~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~~~~~kvI~--S~H~---f~~tP~~~~l~~~~~~~  161 (253)
T PRK02412        102 KAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAHEHGVKVVL--SYHD---FEKTPPKEEIVERLRKM  161 (253)
T ss_pred             HHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHHHcCCEEEE--eeCC---CCCCcCHHHHHHHHHHH
Confidence            5677788 898888754322               2345777788888887763  3320   01112336788899999


Q ss_pred             HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          287 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~---~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      .++|+|.+-|+=+  .-++.++.+++....+.   .+..++-.=+=-.+|.  ..=+.+-..|....-+++.. ..    
T Consensus       162 ~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~--~SRil~~~~GS~~ty~~~~~-~s----  232 (253)
T PRK02412        162 ESLGADIVKIAVM--PQSEQDVLTLLNATREMKELYADQPLITMSMGKLGR--ISRLAGEVFGSSWTFASLDK-AS----  232 (253)
T ss_pred             HHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCch--HHHcchhhhCCcceecCCCC-CC----
Confidence            9999999999866  34577888887766432   2223333222222222  33455566677776666553 22    


Q ss_pred             CCCCCcccHHHHHHHHHhCC
Q 014369          364 KGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       364 ~graGNa~lEevv~~L~~lG  383 (426)
                        +.|+.+++++...++.++
T Consensus       233 --APGQ~~~~el~~i~~~l~  250 (253)
T PRK02412        233 --APGQISVEDLRRILEILH  250 (253)
T ss_pred             --CCCCCCHHHHHHHHHHhc
Confidence              578999999999888765

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.63  E-value=5  Score=42.38  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec--C-CCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHc-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAA-  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~--~-~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~-  213 (426)
                      ..+.+..++-++.|.+.|++.|.+.-  + ..++.... ....++++.+...++   +++....|.   .+-++...++ 
T Consensus       174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~  252 (437)
T PRK14331        174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIP  252 (437)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCC
Confidence            46888888888888889999887742  1 11111100 134556666554443   333333332   3345666666 


Q ss_pred             -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                       |...+++.+ +.|+.-++ .+++.  ...+.+.++++.+++.  |+.+.++++  +|.|..   +.+.+.+..+.+.++
T Consensus       253 ~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--vG~PgE---T~ed~~~tl~~l~~l  324 (437)
T PRK14331        253 QVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--VGFPTE---TEEDFEETLDVLKKV  324 (437)
T ss_pred             ccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--EECCCC---CHHHHHHHHHHHHhc
Confidence             478888876 45554443 34443  1244556777788887  888877776  677765   467777777777888


Q ss_pred             CCCEEEE
Q 014369          290 GCFEISL  296 (426)
Q Consensus       290 Gad~I~l  296 (426)
                      +.+.+.+
T Consensus       325 ~~~~i~~  331 (437)
T PRK14331        325 EFEQVFS  331 (437)
T ss_pred             Ccceeee
Confidence            8765443

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=91.54  E-value=4.1  Score=40.96  Aligned_cols=207  Identities=13%  Similarity=0.105  Sum_probs=116.3

Q ss_pred             HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC---------C-hhhHHHHHHcCCCEE
Q 014369          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP---------N-LKGFEAAIAAGAKEV  218 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------~-~~di~~a~~~Gv~~V  218 (426)
                      ++.+.++|++.|=.++..  ..-++|.  +-+..++++.++++.+ +.+++++-         + .+-++...++|+.-|
T Consensus        28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi  107 (290)
T TIGR02321        28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAI  107 (290)
T ss_pred             HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEE
Confidence            456678899999887641  1234553  3567788888876543 34444441         1 134677888999999


Q ss_pred             EEeccCChHHHhhh----c-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCCC
Q 014369          219 AIFASASEAFSKSN----I-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~----~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      +|-..+.+.+.-+.    . =.+.++..++++.+.+. + .+..... +..+    |+  .....+...+-+++..++||
T Consensus       108 ~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~I-~ART----Da~~~~~g~deAI~Ra~aY~eAGA  180 (290)
T TIGR02321       108 VMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFVV-IARV----EALIAGLGQQEAVRRGQAYEEAGA  180 (290)
T ss_pred             EEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEEE-EEEe----ccccccCCHHHHHHHHHHHHHcCC
Confidence            99987655321111    1 13678888877655544 2 3332221 0110    11  11235677777888999999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEeecccCCCCCCCCCCCCCcc
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSVAGLGGCPYAKGASGNV  370 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD~Sv~GlGecP~a~graGNa  370 (426)
                      |.|.+.=  +.-+|+++..+++.+....   ++-+..=.+..+. +..+  -++| +..|-.....  -      ++-..
T Consensus       181 D~ifv~~--~~~~~~ei~~~~~~~~~p~---pv~~~~~~~p~~~-~~~l--~~lg~~~~v~~g~~~--~------~aa~~  244 (290)
T TIGR02321       181 DAILIHS--RQKTPDEILAFVKSWPGKV---PLVLVPTAYPQLT-EADI--AALSKVGIVIYGNHA--I------RAAVG  244 (290)
T ss_pred             CEEEecC--CCCCHHHHHHHHHhcCCCC---CeEEecCCCCCCC-HHHH--HHhcCCcEEEEChHH--H------HHHHH
Confidence            9999842  3467888888877763222   3433220111111 2233  3455 5654222221  2      45566


Q ss_pred             cHHHHHHHHHhCC
Q 014369          371 ATEDVVYMLSGLG  383 (426)
Q Consensus       371 ~lEevv~~L~~lG  383 (426)
                      ++++.+..++..|
T Consensus       245 a~~~~~~~i~~~g  257 (290)
T TIGR02321       245 AVREVFARIRRDG  257 (290)
T ss_pred             HHHHHHHHHHHcC
Confidence            7777777776544

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PLN02591 tryptophan synthase

Probab=91.53  E-value=9.4  Score=37.56  Aligned_cols=152  Identities=12%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhh-----------hcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKS-----------NINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~-----------~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++...+.|+|.+-+-+|.||...--           +-|.+.++.++.    ++..|+ ...++.  +|.-+ .+.- . 
T Consensus        22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~----~~~~r~~~~~p~i--lm~Y~-N~i~-~-   92 (250)
T PLN02591         22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISM----LKEVAPQLSCPIV--LFTYY-NPIL-K-   92 (250)
T ss_pred             HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHH----HHHHhcCCCCCEE--EEecc-cHHH-H-
Confidence            4556678999999999999842211           124444444443    444443 233332  33211 1110 1 


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                        --+.++++.+.++|++-+.++|-    .+++..++.+..+++ .. .+-+-.--+.-..-...+++...|.=+. .|.
T Consensus        93 --~G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl-~~I~lv~Ptt~~~ri~~ia~~~~gFIY~-Vs~  163 (250)
T PLN02591         93 --RGIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GI-ELVLLTTPTTPTERMKAIAEASEGFVYL-VSS  163 (250)
T ss_pred             --hHHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CC-eEEEEeCCCCCHHHHHHHHHhCCCcEEE-eeC
Confidence              12355788889999999999994    578888888887664 32 2333333333344556666666665553 244


Q ss_pred             cCCCCCCCCCCCCC-cccHHHHHHHHHh
Q 014369          355 AGLGGCPYAKGASG-NVATEDVVYMLSG  381 (426)
Q Consensus       355 ~GlGecP~a~graG-Na~lEevv~~L~~  381 (426)
                      .|.-+     .+++ ...+++.+..+++
T Consensus       164 ~GvTG-----~~~~~~~~~~~~i~~vk~  186 (250)
T PLN02591        164 TGVTG-----ARASVSGRVESLLQELKE  186 (250)
T ss_pred             CCCcC-----CCcCCchhHHHHHHHHHh
Confidence            55443     1334 4667888888885

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.52  E-value=20  Score=37.65  Aligned_cols=144  Identities=16%  Similarity=0.184  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC---CC-Ccc--ccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SP-KWV--PQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAI  211 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~-~~~--p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~  211 (426)
                      ..+.+..++-++.|.+.|++.|-+....   -. +..  +...+..++++.+..+++.   ++..+-|.   .+-++...
T Consensus       155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~  234 (420)
T PRK14339        155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA  234 (420)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence            4588998988999999999988774211   01 100  0112356666666554543   33222232   23456666


Q ss_pred             Hc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          212 AA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       212 ~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++  |...+++.+ +.|+.-++ .+|+..  ..+.+.++++.+++.  |+.+..+++  +|.|..+   .+.+.+.++.+
T Consensus       235 ~~~~~~~~l~iglQSgsd~vLk-~M~R~~--t~~~~~~~v~~lr~~~p~i~i~~d~I--vGfPgET---eedf~~Tl~fl  306 (420)
T PRK14339        235 KNPKICKSIHMPLQSGSSEILK-AMKRGY--TKEWFLNRAEKLRALVPEVSISTDII--VGFPGES---DKDFEDTMDVL  306 (420)
T ss_pred             cCCCccCceEeCCccCCHHHHH-hccCCC--CHHHHHHHHHHHHHHCCCCEEEEEEE--EECCCCC---HHHHHHHHHHH
Confidence            66  467888887 44554333 344422  244555667777776  666666665  6778764   56666666666


Q ss_pred             HhCCCCEEE
Q 014369          287 HDMGCFEIS  295 (426)
Q Consensus       287 ~~~Gad~I~  295 (426)
                      .+.+.+.+.
T Consensus       307 ~~l~~~~~~  315 (420)
T PRK14339        307 EKVRFEQIF  315 (420)
T ss_pred             HhcCCCEEe
Confidence            777766443

>PTZ00372 endonuclease 4-like protein; Provisional

Probab=91.52  E-value=16  Score=38.58  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++++|.+.|++.|.+... +.     ......+++++++.+.+..+.+....|...|...-|....=-.+++.+.++.+.
T Consensus       223 eL~rA~~LGa~~VV~HPG-s~-----~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~  296 (413)
T PTZ00372        223 DLQRCEQLGIKLYNFHPG-ST-----VGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL  296 (413)
T ss_pred             HHHHHHHcCCCEEEECCC-cC-----CCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence            567888899998777533 21     112345778888888887776654445544553322111112467888888776


Q ss_pred             HHhCCCCEEE-EcCCC-----CC--CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCc-HHHHHHHHHHcCCCEEeeccc
Q 014369          286 LHDMGCFEIS-LGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       286 l~~~Gad~I~-l~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      +.+.  +++. .-||.     |+  -+|+.+.++++.+.+.++ +---.+|+||..|- +         +|.|    -=.
T Consensus       297 v~~~--~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~G---------S~~D----RH~  361 (413)
T PTZ00372        297 VEDK--SRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLG---------SGLD----RHE  361 (413)
T ss_pred             cCCc--CCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccC---------CCcc----ccc
Confidence            5321  2222 22553     32  367788888888877765 22367899998653 2         1223    122


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          356 GLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       356 GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      .+|+        |+...+.+...++
T Consensus       362 ~IG~--------G~Ig~~~f~~l~~  378 (413)
T PTZ00372        362 NIGK--------GKLGMETFKFIMN  378 (413)
T ss_pred             CcCC--------CCcChHHHHHHHh
Confidence            3443        6777777777776

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.51  E-value=9.5  Score=40.57  Aligned_cols=144  Identities=11%  Similarity=0.063  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec--CCCC---CccccccCHHHHHHHhH-h---cCCCcEEE---EeCC---hhhHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS--FVSP---KWVPQLADARDVMEAVR-D---LEGARLPV---LTPN---LKGFE  208 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~--~~s~---~~~p~~~D~~~v~~~i~-~---~~~~~l~~---l~~~---~~di~  208 (426)
                      ..+.+..++-++.|.+.|++.|-+.-  +...   ..........++++.+. .   ..+.....   +-|.   .+-++
T Consensus       180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~  259 (455)
T PRK14335        180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIA  259 (455)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHH
Confidence            46888888888999999998886632  1110   00001113455555552 1   12332222   2232   23455


Q ss_pred             HHHH--cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          209 AAIA--AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       209 ~a~~--~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ...+  .|...+++.+ +.|+.-++ .+|+.  ...+.+.++++.+++.  |+.+.++++  +|.|..+   .+.+.+.+
T Consensus       260 ~m~~~~~gc~~l~iglQSgsd~vLk-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~I--vGfPgET---~edf~~Tl  331 (455)
T PRK14335        260 TIAQESRLCRLVHLPVQHGSNGVLK-RMNRS--YTREHYLSLVGKLKASIPNVALSTDIL--IGFPGET---EEDFEQTL  331 (455)
T ss_pred             HHHhCCCCCCeEEEccCcCCHHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCCC---HHHHHHHH
Confidence            5555  4789999988 55665554 35553  2355667888888888  888777776  6778653   56677777


Q ss_pred             HHHHhCCCCEEE
Q 014369          284 KELHDMGCFEIS  295 (426)
Q Consensus       284 ~~l~~~Gad~I~  295 (426)
                      +.+.+.+.+.+.
T Consensus       332 ~~i~~l~~~~~~  343 (455)
T PRK14335        332 DLMREVEFDSAF  343 (455)
T ss_pred             HHHHhcCCCeEE
Confidence            777778776554

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.50  E-value=7.5  Score=41.21  Aligned_cols=155  Identities=16%  Similarity=0.153  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC----CCCccccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHH-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA-  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~-  212 (426)
                      ..+.+..++=++.|.+.|++.|.+.-..    ..+.-+.-....++++.+..+++.   ++..+.|.   .+-++...+ 
T Consensus       176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~  255 (446)
T PRK14337        176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGEL  255 (446)
T ss_pred             eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhC
Confidence            5688888888889999999988874211    000000001344555555544443   33333342   334555555 


Q ss_pred             -cCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          213 -AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       213 -~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                       .+...+++.+ +.|+.-++ .+|+..  ..+.+.++++.+++.  |+.+.++++  +|.|..+   .+.+.+..+.+.+
T Consensus       256 ~~~~~~l~iglQSgsd~vLk-~M~R~~--t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgET---~ed~~~tl~~l~~  327 (446)
T PRK14337        256 PNLCPRLHLPLQSGSDRILK-AMGRKY--DMARYLDIVTDLRAARPDIALTTDLI--VGFPGET---EEDFEQTLEAMRT  327 (446)
T ss_pred             CcccCeEEECCCCCCHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCCC---HHHHHHHHHHHHh
Confidence             3577888887 45554444 355531  234555677777776  566666666  6778664   6777777888888


Q ss_pred             CCCCEEEE------cCCCCCCCHH
Q 014369          289 MGCFEISL------GDTIGVGTPG  306 (426)
Q Consensus       289 ~Gad~I~l------~DT~G~~~P~  306 (426)
                      .+.+.+.+      +.|.....|.
T Consensus       328 ~~~~~~~~f~ysp~pgT~a~~~~~  351 (446)
T PRK14337        328 VGFASSFSFCYSDRPGTRAEMLPG  351 (446)
T ss_pred             cCCCeeEEEecCCCCCCccccCCC
Confidence            88775554      4555555443

>TIGR01430 aden_deam adenosine deaminase

Probab=91.44  E-value=14  Score=37.04  Aligned_cols=132  Identities=16%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      .++.+++.|+..+.+.+.. .  ...+.|.+.++.++.+.+.++.+ ++.|+.+..-++. +     ...+++.+.+.++
T Consensus        77 ~~~e~~~~Gv~y~E~r~~p-~--~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~-----r~~~~~~~~~~~~  147 (324)
T TIGR01430        77 YVEKAAKDGVVYAEVFFDP-Q--LHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M-----RHKQPEAAEETLE  147 (324)
T ss_pred             HHHHHHHcCCEEEEEEeCc-c--ccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e-----CCCCHHHHHHHHH
Confidence            4556677899777766442 1  12345778999999877777665 4568777644442 1     1135677777777


Q ss_pred             HHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH-HcCCCEE
Q 014369          285 ELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTV  350 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl-~aGa~~V  350 (426)
                      .+.+.+.+.+.=.|..|   ...|+.+..+++..++ . +.++.+|++.+.+.  .+...++ +.|++++
T Consensus       148 ~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~-~-g~~i~~Ha~E~~~~--~~~~~~~~~~g~~ri  213 (324)
T TIGR01430       148 LAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARE-L-GLHLTVHAGELGGP--ESVREALDDLGATRI  213 (324)
T ss_pred             HHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHH-C-CCCeEEecCCCCCh--HHHHHHHHHcCchhc
Confidence            76666654232223322   2235666666655554 2 35688898876332  2344455 5787643

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.42  E-value=7.2  Score=41.01  Aligned_cols=144  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC--C-CCccccccCHHHHHHHhHhcCC---CcEEEEeCC---hhhHHHHHHc-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV--S-PKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAA-  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~--s-~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~---~~di~~a~~~-  213 (426)
                      ..+.++.++=++.|.+.|++.|-+.-..  . ....+......++++.+...++   +++....|.   .+-++...+. 
T Consensus       152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~  231 (418)
T PRK14336        152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLP  231 (418)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcC
Confidence            5788888888899999999988775211  1 0001111234556666655544   233333342   2334544453 


Q ss_pred             -CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          214 -GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       214 -Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                       +...+++.+ +.|+.-++ .+++..  ..+.+.++++.+++.  |+.+.++++  +|.|..+   .+.+.+.++.+.+.
T Consensus       232 ~~~~~l~lglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~pgi~i~~d~I--vGfPGET---~edf~~tl~fi~~~  303 (418)
T PRK14336        232 KVCRSLSLPVQAGDDTILA-AMRRGY--TNQQYRELVERLKTAMPDISLQTDLI--VGFPSET---EEQFNQSYKLMADI  303 (418)
T ss_pred             ccCCceecCCCcCCHHHHH-HhCCCC--CHHHHHHHHHHHHhhCCCCEEEEEEE--EECCCCC---HHHHHHHHHHHHhc
Confidence             477777776 44554443 333321  245566778888887  888887777  5667654   56677777777777


Q ss_pred             CCCEEE
Q 014369          290 GCFEIS  295 (426)
Q Consensus       290 Gad~I~  295 (426)
                      +.+.+.
T Consensus       304 ~~~~~~  309 (418)
T PRK14336        304 GYDAIH  309 (418)
T ss_pred             CCCEEE
Confidence            776654

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=91.40  E-value=2.7  Score=42.14  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      +.++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.++. +|.+... ..++....+..++..+.+....
T Consensus         4 ~k~ll~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V   73 (282)
T TIGR01858         4 TKYMLQDAQAGGYAVPA-----FNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNM   73 (282)
T ss_pred             HHHHHHHHHHcCCeEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCC
Confidence            46788899999987653     321     3578999999999999877 4444332 2334456677888888777753


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  357 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  357 (426)
                       |+.+|  =|.|.-......|+++|.+  .+|+|-..+
T Consensus        74 -PValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~  108 (282)
T TIGR01858        74 -PLALH--LDHHESLDDIRQKVHAGVRSAMIDGSHFPF  108 (282)
T ss_pred             -CEEEE--CCCCCCHHHHHHHHHcCCCEEeecCCCCCH
Confidence             56655  5777788999999999998  568886644

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.31  E-value=9.4  Score=37.70  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=88.9

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHh----------h-hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSK----------S-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~----------~-~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r  273 (426)
                      ++...+.|+|.|-+-+|.||...-          + +-|.+.++.+    +.++..|+.  ..++.  +|.-+ .|.- .
T Consensus        32 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~----~~~~~~r~~~~~~p~v--lm~Y~-N~i~-~  103 (258)
T PRK13111         32 IKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVF----ELVREIREKDPTIPIV--LMTYY-NPIF-Q  103 (258)
T ss_pred             HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE--EEecc-cHHh-h
Confidence            455667899999999999884211          1 1133444444    444445533  33432  33211 1211 1


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .   -+.++++.+.++|++.+.++|-    .+++..++++.+++. +...|-+ +=.+.--.....+++...|.=++ .+
T Consensus       104 ~---G~e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~l-vap~t~~eri~~i~~~s~gfIY~-vs  173 (258)
T PRK13111        104 Y---GVERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFL-VAPTTTDERLKKIASHASGFVYY-VS  173 (258)
T ss_pred             c---CHHHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEE-eCCCCCHHHHHHHHHhCCCcEEE-Ee
Confidence            1   2345678888999999999994    678888988888764 4323433 33333345566677776665444 46


Q ss_pred             ccCCCCCCCCCCCCC-cccHHHHHHHHHh
Q 014369          354 VAGLGGCPYAKGASG-NVATEDVVYMLSG  381 (426)
Q Consensus       354 v~GlGecP~a~graG-Na~lEevv~~L~~  381 (426)
                      +.|..+     .+++ ...+++.+..+++
T Consensus       174 ~~GvTG-----~~~~~~~~~~~~i~~vk~  197 (258)
T PRK13111        174 RAGVTG-----ARSADAADLAELVARLKA  197 (258)
T ss_pred             CCCCCC-----cccCCCccHHHHHHHHHh
Confidence            666544     0222 2567888888886

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.22  E-value=9.4  Score=41.38  Aligned_cols=145  Identities=14%  Similarity=0.158  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC---CCCCccccc-cCHHHHHHHhHhc--CCCcEEEEeCC---hhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTPN---LKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~---~s~~~~p~~-~D~~~v~~~i~~~--~~~~l~~l~~~---~~di~~a~~~G  214 (426)
                      ..+.++.++-++.|.+.|+..|.+..-   ...+..... ....++++.+..+  +.+++....|.   .+-++...+.|
T Consensus       240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g  319 (509)
T PRK14327        240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGG  319 (509)
T ss_pred             eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcC
Confidence            568888898889999999987776321   111100000 1234566665543  23344443342   23466666777


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        +..+++.+ +.|+.-++ .+|+..  ..+.+.++++.++++  ++.+..+++  +|.|..+   .+.+.+.++.+.+.
T Consensus       320 ~~~~~l~lgvQSgsd~vLk-~M~R~~--t~e~~~~~v~~lr~~~p~i~i~tdiI--vGfPgET---~edf~~Tl~~v~~l  391 (509)
T PRK14327        320 NLVEHIHLPVQSGSTEVLK-IMARKY--TRESYLELVRKIKEAIPNVALTTDII--VGFPNET---DEQFEETLSLYREV  391 (509)
T ss_pred             CccceEEeccCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCcEEeeeEE--EeCCCCC---HHHHHHHHHHHHHc
Confidence              56888887 44554443 344421  234566778888887  455555555  6778764   56677777777788


Q ss_pred             CCCEEEE
Q 014369          290 GCFEISL  296 (426)
Q Consensus       290 Gad~I~l  296 (426)
                      +.+.+.+
T Consensus       392 ~~d~~~~  398 (509)
T PRK14327        392 GFDHAYT  398 (509)
T ss_pred             CCCeEEE
Confidence            8765554

>PRK07360 FO synthase subunit 2; Reviewed

Probab=91.21  E-value=1.7  Score=44.93  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEe---------CCCcCcHHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNIL  340 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~---------HNd~GlA~ANaL  340 (426)
                      ...+++.+.+.++.+.+.|+.+|.|..-.+...  ++.+.++++.+++.+|.  +.+|+         -.+.|+..-..+
T Consensus        89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l  166 (371)
T PRK07360         89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVL  166 (371)
T ss_pred             eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHH
Confidence            346899999999999999999999993222222  45688999999988875  44443         336788877766


Q ss_pred             HHH-HcCCCEEe
Q 014369          341 ISL-QMGISTVD  351 (426)
Q Consensus       341 aAl-~aGa~~VD  351 (426)
                      ..+ +||++.+.
T Consensus       167 ~~LkeAGld~~~  178 (371)
T PRK07360        167 KALKDAGLDSMP  178 (371)
T ss_pred             HHHHHcCCCcCC
Confidence            665 79999886

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=91.19  E-value=1.8  Score=43.39  Aligned_cols=124  Identities=18%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             eCChhhHHHHHHcCCCEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          201 TPNLKGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       201 ~~~~~di~~a~~~Gv~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                      +-|.+..+.|-++|.+.|.+...+ ||.-.. . |.-+-...+.+. .++.+  -.++|.+            ..-..++
T Consensus        24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~-g-g~~Rm~~p~~I~-aIk~~--V~iPVig------------k~Righ~   86 (293)
T PRK04180         24 VVNAEQAKIAEEAGAVAVMALERVPADIRAA-G-GVARMADPKMIE-EIMDA--VSIPVMA------------KARIGHF   86 (293)
T ss_pred             eCCHHHHHHHHHhChHHHHHccCCCchHhhc-C-CeeecCCHHHHH-HHHHh--CCCCeEE------------eehhhHH
Confidence            346666777778888776665322 343211 1 222222222222 22222  2455542            2233444


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .+ ++.|.++|+|.|   |-....+|  ..+++..++..+. .+|-.-+- |    +..++.++..||+.|-+|
T Consensus        87 ~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f~-~~fmad~~-~----l~EAlrai~~GadmI~Tt  148 (293)
T PRK04180         87 VE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDFT-VPFVCGAR-N----LGEALRRIAEGAAMIRTK  148 (293)
T ss_pred             HH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHcC-CCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence            44 788999999999   88889999  5588999999883 33443333 2    567889999999999888

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=91.16  E-value=4.4  Score=36.63  Aligned_cols=95  Identities=25%  Similarity=0.341  Sum_probs=65.1

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHh
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK  230 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~  230 (426)
                      .-++++|.++|+++|-.|.+.+|         +++                     ++.|++..++.|.+. +.+..   
T Consensus        30 kvia~~l~d~GfeVi~~g~~~tp---------~e~---------------------v~aA~~~dv~vIgvS-sl~g~---   75 (143)
T COG2185          30 KVIARALADAGFEVINLGLFQTP---------EEA---------------------VRAAVEEDVDVIGVS-SLDGG---   75 (143)
T ss_pred             HHHHHHHHhCCceEEecCCcCCH---------HHH---------------------HHHHHhcCCCEEEEE-eccch---
Confidence            34889999999999999876653         222                     246777888888886 33332   


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       231 ~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                               ..+.+..+++.+|+.|..-.. +  ..    .+-.+++.    .+.+.++|+++|+-+.|
T Consensus        76 ---------h~~l~~~lve~lre~G~~~i~-v--~~----GGvip~~d----~~~l~~~G~~~if~pgt  124 (143)
T COG2185          76 ---------HLTLVPGLVEALREAGVEDIL-V--VV----GGVIPPGD----YQELKEMGVDRIFGPGT  124 (143)
T ss_pred             ---------HHHHHHHHHHHHHHhCCcceE-E--ee----cCccCchh----HHHHHHhCcceeeCCCC
Confidence                     355677889999999986331 1  12    23345555    45677899999998866

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=91.13  E-value=18  Score=36.19  Aligned_cols=173  Identities=15%  Similarity=0.092  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH----hcCC-CcEEEEe--CCh----hhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR----DLEG-ARLPVLT--PNL----KGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~----~~~~-~~l~~l~--~~~----~di~~a~~  212 (426)
                      .++.+.-.++++.+.+.|++-|=++-....  .+.| +.+|.++.++    ...+ +.+.+-+  .+.    +-.+.|.+
T Consensus        17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE--~~~L-s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~   93 (294)
T TIGR02313        17 DIDEEALRELIEFQIEGGSHAISVGGTSGE--PGSL-TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEE   93 (294)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccC-CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHH
Confidence            467888889999999999998776422211  1122 2233333333    2222 3333322  232    33466778


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~G  290 (426)
                      .|+|.+.+..|..       +.-+.++.++-+..+++.+.  ++++..     +..|..  ...+++.+.++++.   . 
T Consensus        94 ~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~i-----Yn~P~~tg~~l~~~~l~~L~~~---~-  155 (294)
T TIGR02313        94 AGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIII-----YNIPGRAAQEIAPKTMARLRKD---C-  155 (294)
T ss_pred             cCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEE-----EeCchhcCcCCCHHHHHHHHhh---C-
Confidence            8999998876531       22355666666666665432  455543     223432  34567776665542   2 


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ...+.++||.|-  ...+.++    .+..+. .+.+ .+++      ...+.++.+|++..
T Consensus       156 pnv~giK~ss~d--~~~~~~~----~~~~~~-~~~v~~G~d------~~~~~~l~~Ga~G~  203 (294)
T TIGR02313       156 PNIVGAKESNKD--FEHLNHL----FLEAGR-DFLLFCGIE------LLCLPMLAIGAAGS  203 (294)
T ss_pred             CCEEEEEeCCCC--HHHHHHH----HHhcCC-CeEEEEcch------HHHHHHHHCCCCEE
Confidence            468999999874  3444443    333443 2443 4333      55667888998644

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=91.12  E-value=12  Score=36.43  Aligned_cols=155  Identities=13%  Similarity=0.122  Sum_probs=83.6

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhc-CCCHHHHH------HHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCH-
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSL------VRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP-  276 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~-~~s~~e~l------~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~-  276 (426)
                      .++...++|+|.+++-+|.||...--.+ ....+.+|      +...+.++..|+. .+++  .+|.-+        +| 
T Consensus        19 ~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv--~lm~y~--------n~~   88 (242)
T cd04724          19 ILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI--VLMGYY--------NPI   88 (242)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE--EEEEec--------CHH
Confidence            4566777899999999887774322111 00011222      2455667777754 4443  244211        22 


Q ss_pred             -HH-HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          277 -SK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       277 -~~-l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                       .+ +.++++.+.++|++.|.++|-    .+++..++++.+++.--.  ..+=+=.+.-......+.....|.-++=+.-
T Consensus        89 ~~~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~~--~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~  162 (242)
T cd04724          89 LQYGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGLD--LIFLVAPTTPDERIKKIAELASGFIYYVSRT  162 (242)
T ss_pred             HHhCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHhhCCCCEEEEeCC
Confidence             11 345777888999999999996    578888899988875322  2222222222222222222223333332233


Q ss_pred             cCCCCCCCCCCCCC-cccHHHHHHHHHhC
Q 014369          355 AGLGGCPYAKGASG-NVATEDVVYMLSGL  382 (426)
Q Consensus       355 ~GlGecP~a~graG-Na~lEevv~~L~~l  382 (426)
                      .|-|.      ..+ ...+.+.+..++++
T Consensus       163 g~tG~------~~~~~~~~~~~i~~lr~~  185 (242)
T cd04724         163 GVTGA------RTELPDDLKELIKRIRKY  185 (242)
T ss_pred             CCCCC------ccCCChhHHHHHHHHHhc
Confidence            33343      443 35567777777763

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2

Probab=91.02  E-value=4.6  Score=39.01  Aligned_cols=81  Identities=21%  Similarity=0.236  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV  350 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V  350 (426)
                      +-.+.+.-.+.++.+.+.+.+.+.|.-........++.++++.+.+.+|.. .-.|.   +|. ...+.+.++..|+|.+
T Consensus        63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~-~pr~l---~G~~~P~~i~~~v~~GvD~f  138 (238)
T PF01702_consen   63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPD-KPRYL---LGVGTPEEILEAVYLGVDLF  138 (238)
T ss_dssp             -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TT-S-EEE---TTB-SHHHHHHHHHTT--EE
T ss_pred             CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcc-cceec---cCCCCHHHHHHHHHcCCcEE
Confidence            445566667778888887799999988776667899999999999988732 34455   333 5689999999999999


Q ss_pred             eecccC
Q 014369          351 DCSVAG  356 (426)
Q Consensus       351 D~Sv~G  356 (426)
                      |++..-
T Consensus       139 Ds~~p~  144 (238)
T PF01702_consen  139 DSSYPT  144 (238)
T ss_dssp             EESHHH
T ss_pred             cchHHH
Confidence            998753

4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=90.97  E-value=8.7  Score=36.49  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccc--cccCHHHHHHHhHhc----CCCcEEEEeCChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVP--QLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p--~~~D~~~v~~~i~~~----~~~~l~~l~~~~~di~~a~~~Gv~  216 (426)
                      .++.+..++=+..+.+.|.++|++|.-++ |..-+  .-.+.+.+...++.+    .++.++.=+++.+-+++|++.|++
T Consensus        15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~   94 (210)
T PF00809_consen   15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGAD   94 (210)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSS
T ss_pred             ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcc
Confidence            34556566678899999999999996542 32111  101122233333333    356666667888889999999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH----HHHHHHHH-------H
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP----SKVAYVAK-------E  285 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~----~~l~~~~~-------~  285 (426)
                      .|.-..+..+                 ..++++.++++|..+.  +++.-+.|..-..++    +.+.++.+       .
T Consensus        95 ~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~  155 (210)
T PF00809_consen   95 IINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEA  155 (210)
T ss_dssp             EEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHH
T ss_pred             eEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            7766544321                 2366677888888665  444332232222222    22333333       3


Q ss_pred             HHhCCC--CEEEEcCCCCCC-CHHHHHHHHHHHH
Q 014369          286 LHDMGC--FEISLGDTIGVG-TPGTVVPMLEAVM  316 (426)
Q Consensus       286 l~~~Ga--d~I~l~DT~G~~-~P~~v~~li~~l~  316 (426)
                      +.++|+  +.|.+==-+|.. ++.+-.++++.++
T Consensus       156 l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~  189 (210)
T PF00809_consen  156 LEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE  189 (210)
T ss_dssp             HHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred             HHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence            445898  677775555553 2445555555444

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=90.96  E-value=3.2  Score=41.18  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             CCCCHHHHHHHHHHHHhCC-C--CEEEEcCCCCCCCHHH------HHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPGT------VVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~G-a--d~I~l~DT~G~~~P~~------v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLa  341 (426)
                      +|-+...+..+.+.+...| +  +++.|.|++-. ..+.      +..-++.+|+.+| ..+|++=+||     +.-+..
T Consensus       124 TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s-----~eea~~  197 (268)
T cd01572         124 TRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-----LEQLKE  197 (268)
T ss_pred             CCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECC-----HHHHHH
Confidence            4544455777777766654 3  58888887733 3333      3445788888887 5579999997     577888


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC--CC----CCcChhhHHHHHH
Q 014369          342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG--VE----TNVDLRKLMLAGD  398 (426)
Q Consensus       342 Al~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG--~~----~~iDl~~L~~la~  398 (426)
                      |+++|||+|               .-||...|++-...+...  +.    -||+++.+.++++
T Consensus       198 A~~~gaDyI---------------~ld~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~  245 (268)
T cd01572         198 ALEAGADII---------------MLDNMSPEELREAVALLKGRVLLEASGGITLENIRAYAE  245 (268)
T ss_pred             HHHcCCCEE---------------EECCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHH
Confidence            999999998               345667788777776542  32    3788888887665

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=90.96  E-value=2  Score=44.30  Aligned_cols=102  Identities=12%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcC
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .++++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+.. +|.+... ..++-...+..++..+.+..+
T Consensus         5 ~~k~lL~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~   74 (347)
T PRK13399          5 TLRQLLDHAAENGYGVPA-----FNV-----NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP   74 (347)
T ss_pred             cHHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence            356788899999987653     321     4678999999999999977 4444332 333445668888888887775


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG  356 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G  356 (426)
                      .+|+.+|  =|.|.-......|+++|.+  .||+|-..
T Consensus        75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l~  110 (347)
T PRK13399         75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLLA  110 (347)
T ss_pred             CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence            3466655  5778788899999999998  67999874

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=90.95  E-value=11  Score=33.51  Aligned_cols=172  Identities=20%  Similarity=0.143  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEEE--eCC-hhhH----HHHHHcCCCEEE
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVL--TPN-LKGF----EAAIAAGAKEVA  219 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~-~~di----~~a~~~Gv~~V~  219 (426)
                      +.-.++++.+.+.|++.|+++.... +....  ....+.++.+....+..+.+-  ..+ ...+    +.+.++|++.|.
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~   89 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE   89 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence            4668899999999999999997532 21111  111122333333234443332  222 2223    477889999998


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      +.......             .+...+.++.+++.  ++.+...+..     ..   +.+.    . .+.++|++.|.+.
T Consensus        90 l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~~----~-~~~~~g~d~i~~~  143 (200)
T cd04722          90 IHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELAA----A-AAEEAGVDEVGLG  143 (200)
T ss_pred             EeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccch----h-hHHHcCCCEEEEc
Confidence            87553211             12233455555554  6666543321     11   1111    0 1678899999987


Q ss_pred             CCCCCCC----HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEEee
Q 014369          298 DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDC  352 (426)
Q Consensus       298 DT~G~~~----P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~VD~  352 (426)
                      ...+...    +......+..+++.. ..+|..    +-|... .|+..++++||+.|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v  198 (200)
T cd04722         144 NGGGGGGGRDAVPIADLLLILAKRGS-KVPVIA----GGGINDPEDAAEALALGADGVIV  198 (200)
T ss_pred             CCcCCCCCccCchhHHHHHHHHHhcC-CCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence            6544322    111123344444433 234444    346666 7888888899998865

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK15108 biotin synthase; Provisional

Probab=90.92  E-value=1.9  Score=44.18  Aligned_cols=115  Identities=17%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHH
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA  314 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~  314 (426)
                      .+.+++++    .++.+++.|+.-   |+.+.+.......+.+++.++++.+.+.|+.   ++-|.|.++++...+|.++
T Consensus        76 ls~eEI~~----~a~~~~~~G~~~---i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeA  145 (345)
T PRK15108         76 MEVEQVLE----SARKAKAAGSTR---FCMGAAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANA  145 (345)
T ss_pred             CCHHHHHH----HHHHHHHcCCCE---EEEEecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHc
Confidence            34455554    445667788753   2222221222234568999999988887753   3468999998777776554


Q ss_pred             -HHH------hcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          315 -VMA------VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       315 -l~~------~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                       +..      ..|..-=.+|.+.++.--+.....|.++|...-.+-+.|+||
T Consensus       146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE  197 (345)
T PRK15108        146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE  197 (345)
T ss_pred             CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence             220      012111124666788888899999999999766677999998

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=90.89  E-value=8.4  Score=38.50  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      .+++.+.+.++.+.+.|++.|-+--+-+           .++++.+..+++..++. . .++.+|++.+     .....+
T Consensus       117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-g-~~v~~H~~~~-----~~i~~~  189 (342)
T cd01299         117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-G-LYVAAHAYGA-----EAIRRA  189 (342)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-C-CEEEEEeCCH-----HHHHHH
Confidence            4578888899999999999887664432           46788888888887764 3 4688888754     456678


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +++|++.|+=               +..-.++.+..|++.|+.
T Consensus       190 l~~G~~~i~H---------------~~~~~~~~~~~l~~~g~~  217 (342)
T cd01299         190 IRAGVDTIEH---------------GFLIDDETIELMKEKGIF  217 (342)
T ss_pred             HHcCCCEEee---------------cCCCCHHHHHHHHHCCcE
Confidence            8899886521               111235666677766653

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=90.88  E-value=11  Score=38.09  Aligned_cols=122  Identities=15%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             CCh-hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          202 PNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       202 ~~~-~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +.. +-++.+++.+++.|.+.... +                  .+.++..|+.|+.|.+.+.           +.    
T Consensus        74 ~~~~~~~~~~~~~~v~~v~~~~g~-p------------------~~~i~~lk~~g~~v~~~v~-----------s~----  119 (307)
T TIGR03151        74 PFVDELVDLVIEEKVPVVTTGAGN-P------------------GKYIPRLKENGVKVIPVVA-----------SV----  119 (307)
T ss_pred             CCHHHHHHHHHhCCCCEEEEcCCC-c------------------HHHHHHHHHcCCEEEEEcC-----------CH----
Confidence            443 34677889999988764321 1                  1467778888987653221           22    


Q ss_pred             HHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccC
Q 014369          281 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAG  356 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~G  356 (426)
                      +.++.+.++|+|.|.+-  +.-|...+.....++..+++.++. +|-.-+.=..+-.   +.+|+..||+.|  -+.+..
T Consensus       120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~i-PviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~  195 (307)
T TIGR03151       120 ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSI-PVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLC  195 (307)
T ss_pred             HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCC-CEEEECCCCCHHH---HHHHHHcCCCEeecchHHhc
Confidence            34677888999999872  223332222346778888877653 5555543333333   455666899855  444555


Q ss_pred             CCCCC
Q 014369          357 LGGCP  361 (426)
Q Consensus       357 lGecP  361 (426)
                      --||+
T Consensus       196 t~Es~  200 (307)
T TIGR03151       196 AKECN  200 (307)
T ss_pred             ccccC
Confidence            55543

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=90.88  E-value=6.3  Score=39.12  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.+.-...+-+++.++..            .++.+.+.++.|++.|.....     ...|.-.+.+.+.+.+..+.+
T Consensus        60 ~~~~~~~~~~~~~viagv~~~------------~~~~ai~~a~~a~~~Gad~v~-----~~~P~y~~~~~~~i~~~~~~v  122 (288)
T cd00954          60 AEIVAEAAKGKVTLIAHVGSL------------NLKESQELAKHAEELGYDAIS-----AITPFYYKFSFEEIKDYYREI  122 (288)
T ss_pred             HHHHHHHhCCCCeEEeccCCC------------CHHHHHHHHHHHHHcCCCEEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence            455555433456666655441            234455677788999987542     124555556677777777766


Q ss_pred             HhC--CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE-eCCC
Q 014369          287 HDM--GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH-LHDT  331 (426)
Q Consensus       287 ~~~--Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H-~HNd  331 (426)
                      .++  +..  .-+++...|.-.+.+   ++..|.+ .|.+ +++. ...|
T Consensus       123 ~~a~~~lpi~iYn~P~~tg~~l~~~---~~~~L~~-~pni-vgiK~s~~d  167 (288)
T cd00954         123 IAAAASLPMIIYHIPALTGVNLTLE---QFLELFE-IPNV-IGVKFTATD  167 (288)
T ss_pred             HHhcCCCCEEEEeCccccCCCCCHH---HHHHHhc-CCCE-EEEEeCCCC
Confidence            553  333  334667777655543   3444443 5653 5653 3444

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=90.83  E-value=1.8  Score=43.60  Aligned_cols=83  Identities=14%  Similarity=0.059  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeC-CCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~H-Nd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++-|.+.-|+|   .++.++-.++++.+++... .++|-+|.- ++.--++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G  103 (309)
T cd00952          24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG  103 (309)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999   5678888889988888765 456777774 78889999999999999


Q ss_pred             CCEEeecc
Q 014369          347 ISTVDCSV  354 (426)
Q Consensus       347 a~~VD~Sv  354 (426)
                      |+.|=..-
T Consensus       104 ad~vlv~~  111 (309)
T cd00952         104 ADGTMLGR  111 (309)
T ss_pred             CCEEEECC
Confidence            99876553

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=90.79  E-value=1.4  Score=41.20  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE--EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV--HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~--H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ..+++...++++.+ +-|++.|-+  +.-..+|.. .+.++.+++.+|+..+.+  |.+ |-|  .-.+-.+.++||+.|
T Consensus         8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i   80 (206)
T TIGR03128         8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV   80 (206)
T ss_pred             CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence            35788999999988 788887776  212333333 577888988887444554  455 333  225677899999988


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcC
Q 014369          351 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD  389 (426)
Q Consensus       351 D~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iD  389 (426)
                      -.-  +  +       +++..+++++...+++|....++
T Consensus        81 ~vh--~--~-------~~~~~~~~~i~~~~~~g~~~~~~  108 (206)
T TIGR03128        81 TVL--G--V-------ADDATIKGAVKAAKKHGKEVQVD  108 (206)
T ss_pred             EEe--c--c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence            532  1  2       23344577777777777766543

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=90.79  E-value=13  Score=39.29  Aligned_cols=144  Identities=15%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---cccccCHHHHHHHhHhcCCCcE---EEEeCC---hhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---VPQLADARDVMEAVRDLEGARL---PVLTPN---LKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---~p~~~D~~~v~~~i~~~~~~~l---~~l~~~---~~di~~a~~~G  214 (426)
                      ..+.++.++=++.|.+.|++.|-+.-.....+   .....+..++++.+..+++...   ....|.   .+-++.+.++|
T Consensus       168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~  247 (434)
T PRK14330        168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSP  247 (434)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCC
Confidence            56788888888888889999876642100000   0011234455555544454422   111122   23455556666


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ...+++.+ +.|+--++ .+|+..  ..+.+.++++.+++.  |+.+.++++  +|.|..   +.+.+.+.++.+.+.
T Consensus       248 ~~~~~l~iglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfPgE---T~edf~~tl~fi~~~  319 (434)
T PRK14330        248 KVAKSIHLPVQSGSNRILK-LMNRRY--TREEYLELIEKIRSKVPDASISSDII--VGFPTE---TEEDFMETVDLVEKA  319 (434)
T ss_pred             cccCceecCcCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence              56788876 44554333 445532  345666788888886  666776665  677865   456777777778888


Q ss_pred             CCCEEE
Q 014369          290 GCFEIS  295 (426)
Q Consensus       290 Gad~I~  295 (426)
                      +.+.+.
T Consensus       320 ~~~~~~  325 (434)
T PRK14330        320 QFERLN  325 (434)
T ss_pred             CCCEEe
Confidence            877665

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=90.77  E-value=19  Score=36.02  Aligned_cols=183  Identities=14%  Similarity=0.116  Sum_probs=108.9

Q ss_pred             CHHHHHHHHHHHH----hCCCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369          146 PTGVKVELIRRLV----SSGLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG  214 (426)
Q Consensus       146 ~~~~ki~I~~~L~----~~Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G  214 (426)
                      +.++.+++++.|.    ++|++.+==|+|-     +|...  |.+...-.+++.++.--++.+..=+-...+++.+.+. 
T Consensus        28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-  106 (281)
T PRK12457         28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-  106 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-
Confidence            6678888999886    5999886555542     22222  2221222334444433455544444567888888888 


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      +|.+.|...     +..+            .++++.+.+.|..|-  |-.      .--.+|++....++.+...|...|
T Consensus       107 vDilQIgAr-----~~rn------------tdLL~a~~~t~kpV~--lKr------Gqf~s~~e~~~aae~i~~~Gn~~v  161 (281)
T PRK12457        107 ADVLQVPAF-----LARQ------------TDLVVAIAKTGKPVN--IKK------PQFMSPTQMKHVVSKCREAGNDRV  161 (281)
T ss_pred             CeEEeeCch-----hhch------------HHHHHHHhccCCeEE--ecC------CCcCCHHHHHHHHHHHHHcCCCeE
Confidence            899998642     1111            256666777777664  221      112467888899999999999988


Q ss_pred             EEcCCC---CCCC-HHHHHHHHHHHHHhcCCceEEE---Ee-----------CCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          295 SLGDTI---GVGT-PGTVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       295 ~l~DT~---G~~~-P~~v~~li~~l~~~~p~~~i~~---H~-----------HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .|+.=-   |+-. +.++.. |..+++..+..|+-+   |.           =-+.-+-..-+.+|+.+|||.+=.=+.
T Consensus       162 ilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvH  239 (281)
T PRK12457        162 ILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAH  239 (281)
T ss_pred             EEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec
Confidence            888631   2221 122222 334555433334444   54           334455678899999999996644443

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=90.77  E-value=2.7  Score=41.63  Aligned_cols=107  Identities=15%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             CCCCHHHHHHHHHHHHhCC-C--CEEEEcCCCCCCCHH-----HHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPG-----TVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~G-a--d~I~l~DT~G~~~P~-----~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +|-+...+..+.+.+...| +  +++.|.|++-+-.=.     .+..-++.+|+..| ..+|++-+|+     ..-++.|
T Consensus       123 TRKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t-----~eea~~A  197 (269)
T cd01568         123 TRKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVET-----LEEAEEA  197 (269)
T ss_pred             cCCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCC-----HHHHHHH
Confidence            4544455777777666654 3  478888876542211     23456788888887 6679999987     6788899


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CC----CCCcChhhHHHHHH
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GV----ETNVDLRKLMLAGD  398 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~----~~~iDl~~L~~la~  398 (426)
                      +++|+|+|               .-||...|++-...+..    .+    .-||+++.+.++++
T Consensus       198 ~~~gaD~I---------------~ld~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~  246 (269)
T cd01568         198 LEAGADII---------------MLDNMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAE  246 (269)
T ss_pred             HHcCCCEE---------------EECCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHH
Confidence            99999998               34555556665544432    12    13688888877654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917

Probab=90.76  E-value=2.4  Score=40.85  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=67.4

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +....+.|.+.|.+|- ..-           ...++.++.+++.|-++|+.++         | .+-.|.+.+.++.+.+
T Consensus       141 iaml~dmG~~SiKffP-M~G-----------l~~leE~~avA~aca~~g~~lE---------P-TGGIdl~Nf~~I~~i~  198 (236)
T TIGR03581       141 IAMLKDMGGSSVKFFP-MGG-----------LKHLEEYAAVAKACAKHGFYLE---------P-TGGIDLDNFEEIVQIA  198 (236)
T ss_pred             HHHHHHcCCCeeeEee-cCC-----------cccHHHHHHHHHHHHHcCCccC---------C-CCCccHHhHHHHHHHH
Confidence            4455678999999882 111           1346777888999999998654         3 4567999999999999


Q ss_pred             HhCCCCEE-------EEcCCCCCCCHHHHHHHHHHHHH
Q 014369          287 HDMGCFEI-------SLGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       287 ~~~Gad~I-------~l~DT~G~~~P~~v~~li~~l~~  317 (426)
                      .++|+..|       .|--..|...|++|++|+..+++
T Consensus       199 ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~  236 (236)
T TIGR03581       199 LDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK  236 (236)
T ss_pred             HHcCCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence            99998654       24456799999999999998763

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=90.74  E-value=14  Score=37.00  Aligned_cols=77  Identities=16%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE----cCC---CCC-----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISL----GDT---IGV-----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l----~DT---~G~-----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+++.+.++++.+.+.|+|.|.|    +.+   -|.     -.|+.+.++++.+++... .||.+-..-+.---..-+-+
T Consensus       110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~  188 (299)
T cd02940         110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA  188 (299)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence            46789999999999899987776    233   121     469999999999998764 35667655444333344455


Q ss_pred             HHHcCCCEEe
Q 014369          342 SLQMGISTVD  351 (426)
Q Consensus       342 Al~aGa~~VD  351 (426)
                      +.++||+.|-
T Consensus       189 ~~~~Gadgi~  198 (299)
T cd02940         189 AKEGGADGVS  198 (299)
T ss_pred             HHHcCCCEEE
Confidence            7789999764

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=90.73  E-value=5.5  Score=40.04  Aligned_cols=138  Identities=17%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             ChhhHHHHHHcCCCEEEEec-cCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIFA-SASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +--..+.+.++|.+-|.+.= .++-.+-.--. ..+.++.++.+.++++..   .++|.+.+-.-|       -++..+.
T Consensus        24 D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~Gy-------G~~~~v~   93 (290)
T TIGR02321        24 NPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADIDTGF-------GNAVNVH   93 (290)
T ss_pred             CHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECCCCC-------CCcHHHH
Confidence            33345566677888666541 11110000001 247788888887766554   577775553322       2333688


Q ss_pred             HHHHHHHhCCCCEEEEcCCC----------C---CCCHHHHHHHHHHHHHhcCCceEEEEeCC-------CcCcHHHHHH
Q 014369          281 YVAKELHDMGCFEISLGDTI----------G---VGTPGTVVPMLEAVMAVVPVEKLAVHLHD-------TYGQSLPNIL  340 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~----------G---~~~P~~v~~li~~l~~~~p~~~i~~H~HN-------d~GlA~ANaL  340 (426)
                      +.++.+.++|+.-|.|-|.+          |   +..++++.+-|++.++.-.+..+-+=.--       .+--++.-+.
T Consensus        94 ~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~  173 (290)
T TIGR02321        94 YVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQ  173 (290)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHH
Confidence            99999999999999999975          1   34667777777777765322223332221       2245777778


Q ss_pred             HHHHcCCCEE
Q 014369          341 ISLQMGISTV  350 (426)
Q Consensus       341 aAl~aGa~~V  350 (426)
                      +-.+||||.|
T Consensus       174 aY~eAGAD~i  183 (290)
T TIGR02321       174 AYEEAGADAI  183 (290)
T ss_pred             HHHHcCCCEE
Confidence            8889999966

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK10481 hypothetical protein; Provisional

Probab=90.73  E-value=8.6  Score=37.28  Aligned_cols=130  Identities=25%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             CCccccCCCCCCCCCHHHHHH----HHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC--hh
Q 014369          132 VGPRDGLQNEKNTVPTGVKVE----LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN--LK  205 (426)
Q Consensus       132 ~TLRDG~Q~~~~~f~~~~ki~----I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~--~~  205 (426)
                      +=||||.|.   .++.+...+    .+..|++.|++.|=+.-+..-   |.+..             .+...+.|.  ..
T Consensus        60 trL~dG~~v---~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdf---p~l~a-------------~r~~l~~P~~~i~  120 (224)
T PRK10481         60 TRLNDGQQV---HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEF---PSLTA-------------RNAILLEPSRILP  120 (224)
T ss_pred             EEecCCCEE---EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCC---CCccc-------------cCccccCchhhHH
Confidence            569999998   566655443    566788899999888654431   11100             011111121  12


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .+-.|+..| +.|.+..+.-+                .+.+..++-++.|+++....    ..|+.  .+++.+.+.++.
T Consensus       121 ~lv~Al~~g-~riGVitP~~~----------------qi~~~~~kw~~~G~~v~~~~----aspy~--~~~~~l~~aa~~  177 (224)
T PRK10481        121 PLVAAIVGG-HQVGVIVPVEE----------------QLAQQAQKWQVLQKPPVFAL----ASPYH--GSEEELIDAGKE  177 (224)
T ss_pred             HHHHHhcCC-CeEEEEEeCHH----------------HHHHHHHHHHhcCCceeEee----cCCCC--CCHHHHHHHHHH
Confidence            333343334 78888877432                22344455566699887322    23542  567889999999


Q ss_pred             HHhCCCCEEEEcCCCCCCC
Q 014369          286 LHDMGCFEISLGDTIGVGT  304 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~  304 (426)
                      +.+.|+|.|.+ |-.|+.+
T Consensus       178 L~~~gaD~Ivl-~C~G~~~  195 (224)
T PRK10481        178 LLDQGADVIVL-DCLGYHQ  195 (224)
T ss_pred             hhcCCCCEEEE-eCCCcCH
Confidence            99999998866 5667766

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=90.66  E-value=4.2  Score=41.01  Aligned_cols=136  Identities=13%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             hhHHHHHHcCCCEEEEe-ccCChH-HHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIF-ASASEA-FSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~-~~~Sd~-~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -..+.+.++|.+-+.+. ..++-. +-.--. ..+.++.++.+.++++.   ..++|.+.+-.-|       -++..+.+
T Consensus        27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~---~~lPv~aD~dtGy-------G~~~~v~r   96 (294)
T TIGR02319        27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA---VDVPVIMDADAGY-------GNAMSVWR   96 (294)
T ss_pred             HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCC-------CCcHHHHH
Confidence            34566677898877663 111111 000011 24677888877766654   3677775554322       23344788


Q ss_pred             HHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEE------eCCCcCcHHHHHHHHHH
Q 014369          282 VAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVH------LHDTYGQSLPNILISLQ  344 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H------~HNd~GlA~ANaLaAl~  344 (426)
                      .++.+.++|+..|.|-|.++           +..+++....|++.++.-.+..+-+=      ....+--++.-+.+-.+
T Consensus        97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e  176 (294)
T TIGR02319        97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA  176 (294)
T ss_pred             HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence            99999999999999999874           34566677777777764322112221      12234567788888889


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      +|||.|
T Consensus       177 AGAD~i  182 (294)
T TIGR02319       177 AGADCI  182 (294)
T ss_pred             hCCCEE
Confidence            999966

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK15063 isocitrate lyase; Provisional

Probab=90.54  E-value=10  Score=40.08  Aligned_cols=200  Identities=15%  Similarity=0.079  Sum_probs=119.6

Q ss_pred             hhHHHHHHcCCCEEEEeccCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-----------
Q 014369          205 KGFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-----------  269 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd----~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-----------  269 (426)
                      +-++..+++|+.-|+|-..+..    -|...+-=.+.++.++++..+...+..+|.+.. -+..+-...           
T Consensus       165 ~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~v-IiARTDA~aa~li~s~~d~r  243 (428)
T PRK15063        165 ELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTL-VIARTDAEAADLLTSDVDER  243 (428)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeE-EEEECCcccccccccccccc
Confidence            3467778999999999987642    122222124789999998776666666776632 122211000           


Q ss_pred             -----CCCC---------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--
Q 014369          270 -----VEGA---------IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  333 (426)
Q Consensus       270 -----d~~r---------~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--  333 (426)
                           ...|         ...+...+-+++..+ |||.|.+.  .|.-.+++++++.+.++..+|+..+..=+--.+-  
T Consensus       244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~E--t~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~  320 (428)
T PRK15063        244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCE--TSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWK  320 (428)
T ss_pred             ccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeC--CCCCCHHHHHHHHHhhcccCccceeecCCCCCcccc
Confidence                 0000         123344444555556 99999775  2346889999999999887885333331000110  


Q ss_pred             --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC
Q 014369          334 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  407 (426)
Q Consensus       334 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~  407 (426)
                        |.   +++ .-..-++|..++=-++.|+        ++-|.++++++..++.-|...-+++.    =.++-.+.-|..
T Consensus       321 ~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~--------ha~~~a~~~~a~~~~~~Gm~ay~~~Q----~~e~~~~~~g~~  388 (428)
T PRK15063        321 KNLDDATIAKFQRELGAMGYKFQFITLAGF--------HSLNYSMFDLAHGYAREGMAAYVELQ----EAEFAAEERGYT  388 (428)
T ss_pred             cccCHHHHHHHHHHHHHcCceEEEechHHH--------HHHHHHHHHHHHHHHHhccHHHHHHH----HHHHHHHhcCcc
Confidence              11   111 2333469999999999988        56889999999999876554222221    122334556777


Q ss_pred             CCCCCcccchhhh
Q 014369          408 SGSKTAIALNRIA  420 (426)
Q Consensus       408 ~~~~~pivG~~vf  420 (426)
                      .-.++--+|.+-|
T Consensus       389 ~~~hq~~~G~~y~  401 (428)
T PRK15063        389 AVKHQREVGTGYF  401 (428)
T ss_pred             eeechhhccccHH
Confidence            7777777777655

>PRK13758 anaerobic sulfatase-maturase; Provisional

Probab=90.51  E-value=11  Score=38.59  Aligned_cols=163  Identities=13%  Similarity=0.096  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccC---HHHHHHHhHhcC--CCcEE-EEeCC-----hhhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLE--GARLP-VLTPN-----LKGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~~~v~~~i~~~~--~~~l~-~l~~~-----~~di~~a~~  212 (426)
                      .++.+.-..+++.+.+.+.....+.+...   .|-+..   ..++++.+++..  +..+. .+.-|     .+-++...+
T Consensus        38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~  114 (370)
T PRK13758         38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSE  114 (370)
T ss_pred             CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHH
Confidence            46777777777766555444455555422   233321   235555555432  33331 23322     344566667


Q ss_pred             cCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          213 AGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       213 ~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .++ .|.|.+-.. +.|........-...++++.+.++.+++.|+++.+.+.  +     ++...+.+.++++.+.+.|+
T Consensus       115 ~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~--v-----~~~n~~~l~~i~~~~~~~g~  186 (370)
T PRK13758        115 NKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCV--V-----TSNTARHVNKIYKYFKEKDF  186 (370)
T ss_pred             cCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEE--e-----ccccccCHHHHHHHHHHcCC
Confidence            775 677775443 33322211111245677788888888888887664333  2     23345567777778888999


Q ss_pred             CEEEEc---CCCC--------CCCHHHHHHHHHHHHH
Q 014369          292 FEISLG---DTIG--------VGTPGTVVPMLEAVMA  317 (426)
Q Consensus       292 d~I~l~---DT~G--------~~~P~~v~~li~~l~~  317 (426)
                      +.+.+.   +..|        .+.|.+..+++..+.+
T Consensus       187 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~  223 (370)
T PRK13758        187 KFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD  223 (370)
T ss_pred             CeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence            877542   2222        3577777776666554

>PRK08508 biotin synthase; Provisional

Probab=90.49  E-value=1.2  Score=44.23  Aligned_cols=135  Identities=16%  Similarity=0.051  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHH
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA  314 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~  314 (426)
                      .+.++.++.    ++++++.|..-.+-+...++   ....+.+++.++++.+.+.+.+ +.+.-+.|..+++.+.+|-++
T Consensus        40 ~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~---~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a  111 (279)
T PRK08508         40 KDIEQIVQE----AKMAKANGALGFCLVTSGRG---LDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA  111 (279)
T ss_pred             CCHHHHHHH----HHHHHHCCCCEEEEEeccCC---CCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence            466666654    44566667642211111111   1123568888888888776533 234446788887777666544


Q ss_pred             HHHhcCC-c----eEE--EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          315 VMAVVPV-E----KLA--VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       315 l~~~~p~-~----~i~--~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      =...++. .    .+-  ++.-.++.--+.....|-++|...-.+-+.|+||      .  .-...+.+..|+.++.+
T Consensus       112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~  181 (279)
T PRK08508        112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH  181 (279)
T ss_pred             CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence            1222221 0    010  0111223334445556788998877888899988      2  34455555556555543

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=90.43  E-value=20  Score=35.67  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEc----CCCC-----CCC
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLG----DTIG-----VGT  304 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G--ad~I~l~----DT~G-----~~~  304 (426)
                      ..+..++++..   ..++.+.++.++|..         .+++.+.++++.+.+++  +|.|.|.    -+.|     ...
T Consensus        74 g~~~~~~~~~~---~~~~~~~pl~~qi~g---------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~  141 (300)
T TIGR01037        74 GVEAFLEELKP---VREEFPTPLIASVYG---------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQD  141 (300)
T ss_pred             CHHHHHHHHHH---HhccCCCcEEEEeec---------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccC
Confidence            44555554443   334556666655531         35889999999998764  7876663    1111     247


Q ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          305 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       305 P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      |+.+.++++++++.++ .+|.+-.-.+.--...-+-.+.++|++.|.+
T Consensus       142 ~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v  188 (300)
T TIGR01037       142 PELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAAEEAGADGLTL  188 (300)
T ss_pred             HHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence            8999999999998864 3566655433333445555677899998854

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=90.31  E-value=18  Score=34.97  Aligned_cols=196  Identities=16%  Similarity=0.135  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          149 VKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      +-+++++.+.+.|++.|=+-=. .....    .+..++++.+.+..++++++  -.++.++++.++.+|++.+.+-..+ 
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~----~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~-  107 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAFGR----GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA-  107 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccCCC----CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH-
Confidence            5678999999999886554211 11111    11224444444323444443  4588999999999999988664321 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe-eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CC
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GV  302 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~-~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~  302 (426)
                                  -+..+.+.++++...+. +.+...+-. .+-. .....+...+.++++.+.++|++.|.+-|-.  |.
T Consensus       108 ------------l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~-~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~  173 (241)
T PRK14024        108 ------------LENPEWCARVIAEHGDR-VAVGLDVRGHTLAA-RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT  173 (241)
T ss_pred             ------------hCCHHHHHHHHHHhhhh-EEEEEEEeccEecc-CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence                        01123344444443322 111111100 0000 0001123456778889999999988887663  44


Q ss_pred             CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH----HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHH
Q 014369          303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL----QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYM  378 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl----~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~  378 (426)
                      .... -.++++.+++..+. |+-.-+    |.....-+..+    ..||+   +.+.|-+-      -.|..+++++...
T Consensus       174 ~~G~-d~~~i~~i~~~~~i-pviasG----Gi~s~~D~~~l~~~~~~Gvd---gV~igra~------~~g~~~~~~~~~~  238 (241)
T PRK14024        174 LTGP-NLELLREVCARTDA-PVVASG----GVSSLDDLRALAELVPLGVE---GAIVGKAL------YAGAFTLPEALAV  238 (241)
T ss_pred             ccCC-CHHHHHHHHhhCCC-CEEEeC----CCCCHHHHHHHhhhccCCcc---EEEEeHHH------HcCCCCHHHHHHH
Confidence            4443 35667777776543 455533    22223333332    23544   44555444      4567777776544

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=90.30  E-value=22  Score=35.80  Aligned_cols=204  Identities=17%  Similarity=0.109  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHHHhC----CCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369          146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG  214 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~----Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G  214 (426)
                      +.++.+++|+.|.++    |+..|==|+|-     +|...  |.+.+.=++++.++.--++.+..=+-...+++.+.+. 
T Consensus        28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-  106 (290)
T PLN03033         28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-  106 (290)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-
Confidence            678889999999885    99988887663     23222  2222222334444433344444334567888888887 


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      +|.+.|...     +.            +-.++++.+-+.|..|-  |-.      .--.+|++....++.+...|-+.|
T Consensus       107 ~DilQIgAr-----~~------------rqtdLL~a~~~tgkpV~--lKk------Gq~~t~~e~~~aaeki~~~GN~~v  161 (290)
T PLN03033        107 ADIIQIPAF-----LC------------RQTDLLVAAAKTGKIIN--IKK------GQFCAPSVMRNSAEKVRLAGNPNV  161 (290)
T ss_pred             CcEEeeCcH-----HH------------HHHHHHHHHHccCCeEE--eCC------CCCCCHHHHHHHHHHHHHcCCCcE
Confidence            699988642     11            22356666666777664  221      123578999999999999999988


Q ss_pred             EEcC---CCCCCCH-HHHHHHHHHHHH-hcCCceEEE-Ee----------------CCCcCcHHHHHHHHHHcCCCEEee
Q 014369          295 SLGD---TIGVGTP-GTVVPMLEAVMA-VVPVEKLAV-HL----------------HDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       295 ~l~D---T~G~~~P-~~v~~li~~l~~-~~p~~~i~~-H~----------------HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .|+.   |.|+-.- .+++. +..+++ .+|.+ +.. |.                =-+.-+-..-+.+|+.+|||.+=.
T Consensus       162 iLcERG~tFgy~~lv~D~r~-ip~mk~~~lPVI-~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfi  239 (290)
T PLN03033        162 MVCERGTMFGYNDLIVDPRN-LEWMREANCPVV-ADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFM  239 (290)
T ss_pred             EEEeCCCCcCCCCcccchhh-hHHHHhcCCCEE-EeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            8886   3333211 12222 222332 23431 222 54                133445678899999999996644


Q ss_pred             cccCCCCCC-CCCC-CCCcccHHHHHHHHH
Q 014369          353 SVAGLGGCP-YAKG-ASGNVATEDVVYMLS  380 (426)
Q Consensus       353 Sv~GlGecP-~a~g-raGNa~lEevv~~L~  380 (426)
                      =+.   -|| =|+- ++=..+++++-..|+
T Consensus       240 EvH---pdP~~AlsDg~q~l~~~~l~~ll~  266 (290)
T PLN03033        240 EVH---DDPLSAPVDGPTQWPLRHLEELLE  266 (290)
T ss_pred             Eec---CCccccCCCcccCcCHHHHHHHHH
Confidence            444   234 2221 233455555544443

>TIGR01496 DHPS dihydropteroate synthase

Probab=90.30  E-value=2.4  Score=41.76  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             CCCC-CCHHHHHHHHHHHHhCCCCEEEEcC-CC--C--CCCHH-H---HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHH
Q 014369          270 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-TI--G--VGTPG-T---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  339 (426)
Q Consensus       270 d~~r-~~~~~l~~~~~~l~~~Gad~I~l~D-T~--G--~~~P~-~---v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANa  339 (426)
                      |.++ .+++.+.+.++...+.||+.|-+.- +.  |  ...|+ +   +..+++.+++.+. .+|.+|.++.     .-+
T Consensus        15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-~plsiDT~~~-----~vi   88 (257)
T TIGR01496        15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD-VPISVDTYRA-----EVA   88 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEeCCCH-----HHH
Confidence            3444 5789999999999999999999941 11  1  11232 3   6677777776554 5799999985     455


Q ss_pred             HHHHHcCCCEEeec
Q 014369          340 LISLQMGISTVDCS  353 (426)
Q Consensus       340 LaAl~aGa~~VD~S  353 (426)
                      .+|+++|+++|+..
T Consensus        89 ~~al~~G~~iINsi  102 (257)
T TIGR01496        89 RAALEAGADIINDV  102 (257)
T ss_pred             HHHHHcCCCEEEEC
Confidence            67888899998654

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=90.29  E-value=4.8  Score=38.18  Aligned_cols=110  Identities=17%  Similarity=0.105  Sum_probs=69.0

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +.++.+.++|++.|.+....+                   .+.++.+++.++.+...+           .+.    +.++
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~  116 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR  116 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence            467888899999998854311                   234555666677654211           122    3345


Q ss_pred             HHHhCCCCEEEEcC--CCCCCCHH--HHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEEeec
Q 014369          285 ELHDMGCFEISLGD--TIGVGTPG--TVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCS  353 (426)
Q Consensus       285 ~l~~~Gad~I~l~D--T~G~~~P~--~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~VD~S  353 (426)
                      .+.+.|+|.|.+-.  +.|...+.  ...++++.+++.++ .++-+.+    |... .|+..++.+|++.|...
T Consensus       117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vg  185 (236)
T cd04730         117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMG  185 (236)
T ss_pred             HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEc
Confidence            56678999887633  23443332  34567788877654 2455543    6655 78889999999988764

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=90.28  E-value=2.2  Score=42.50  Aligned_cols=81  Identities=10%  Similarity=0.033  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      ++.|.+.+.++++.+.+.|++.|.+.-|.|=   ++.++-.++++.+.+... ..+|-+|.-.+..-++..+..|-++||
T Consensus        16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Ga   95 (289)
T cd00951          16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGA   95 (289)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence            6789999999999999999999999999884   566777788887777663 455666665566777888888999999


Q ss_pred             CEEee
Q 014369          348 STVDC  352 (426)
Q Consensus       348 ~~VD~  352 (426)
                      +.+=.
T Consensus        96 d~v~~  100 (289)
T cd00951          96 DGILL  100 (289)
T ss_pred             CEEEE
Confidence            98844

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=90.28  E-value=1.2  Score=44.79  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEc-CCCCCCCHHHHHHHHHHHHHh
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLG-DTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~-DT~G~~~P~~v~~li~~l~~~  318 (426)
                      |.+++++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+... |.+. .+...+....+..+++.+.+.
T Consensus         2 lv~~~~ll~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~   71 (287)
T PF01116_consen    2 LVNMKELLKKAKEGGYAVPA-----FNV-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE   71 (287)
T ss_dssp             BHHHHHHHHHHHHHT-BEEE-----EE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHCCCeEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence            45678899999999988753     322     35688999999999998774 3333 344555456778888888888


Q ss_pred             cCCceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          319 VPVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       319 ~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      .. +|+.+|.  |.|........|+++|.+  .+|+|-..+-|        -..-|-+++.+.+.+|
T Consensus        72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee--------Ni~~T~~vv~~ah~~g  127 (287)
T PF01116_consen   72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE--------NIAITREVVEYAHAYG  127 (287)
T ss_dssp             ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH--------HHHHHHHHHHHHHHTT
T ss_pred             cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH--------HHHHHHHHHHhhhhhC
Confidence            76 3676654  556669999999999999  67999777665        2245666777776543

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=90.26  E-value=3.2  Score=35.76  Aligned_cols=131  Identities=19%  Similarity=0.192  Sum_probs=79.9

Q ss_pred             CCCCHHHHHHHHHHH-HhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhc--CCCcEEEEeC----ChhhHHHHHHcC
Q 014369          143 NTVPTGVKVELIRRL-VSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTP----NLKGFEAAIAAG  214 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L-~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~--~~~~l~~l~~----~~~di~~a~~~G  214 (426)
                      ..++.++.++.++.+ .+.|+..|-++.. .    |.+ .+.......+...  .+.++...+.    ..+.++...+.|
T Consensus        26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~g-e----p~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~  100 (166)
T PF04055_consen   26 REMSPEEILEEIKELKQDKGVKEIFFGGG-E----PTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG  100 (166)
T ss_dssp             EECHHHHHHHHHHHHHHHTTHEEEEEESS-T----GGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHhHhcCCcEEEEeec-C----CCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence            367899999999999 6999888888742 1    111 1233344444433  3455555542    256788889999


Q ss_pred             CCEEEEeccCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          215 AKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       215 v~~V~i~~~~Sd~~-~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .+.|.+.+...+.. ....++  .....+++.+.++.+++.|+.....++  ++.|..   +.+++.++++.
T Consensus       101 ~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~---~~~e~~~~~~~  165 (166)
T PF04055_consen  101 VDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE---NDEEIEETIRF  165 (166)
T ss_dssp             CSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT---SHHHHHHHHHH
T ss_pred             ccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC---CHHHHHHHhCc
Confidence            99999987554443 333443  223456667888889999987322233  334533   35666666553

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

>TIGR01431 adm_rel adenosine deaminase-related growth factor

Probab=90.26  E-value=26  Score=37.80  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=95.6

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +.+.+-|+..+-+.......+.....+.+.++.++.+.+.++.+++..- .+.+.+...   .. -..+++.+.+.++.+
T Consensus       204 ~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~---~~-R~~~~~~~~~~~~~a  279 (479)
T TIGR01431       204 EEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYS---PL-RNKDKEELDNYIKVA  279 (479)
T ss_pred             HHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEE---cc-CCCCHHHHHHHHHHH
Confidence            4455678887777766545555555556888999999999888876542 133334322   12 224677777766666


Q ss_pred             HhC---CCCEEEEcCCCCCC----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH---HHHHHHHHHcCCCEEeecccC
Q 014369          287 HDM---GCFEISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS---LPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       287 ~~~---Gad~I~l~DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA---~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      .++   -.+.|.=-|-+|.=    .|..+.+.+..+++.. ++++.+|+=.+.+.+   -.|...|+..|+++|.=.+. 
T Consensus       280 ~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~-gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~-  357 (479)
T TIGR01431       280 MELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKE-KLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFA-  357 (479)
T ss_pred             HHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCccc-
Confidence            554   13334434666632    2445555444444323 457999998776433   48999999999999832222 


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHhCCC
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~~lG~  384 (426)
                                  .+--.+++..++..+|
T Consensus       358 ------------l~~~P~l~~~vke~~I  373 (479)
T TIGR01431       358 ------------LVKHPLVLQMLKERNI  373 (479)
T ss_pred             ------------ccCCHHHHHHHHHhCC
Confidence                        1222567777776554

Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=90.20  E-value=2.1  Score=42.48  Aligned_cols=83  Identities=12%  Similarity=0.076  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.++++.+.+.|++.|.+.-|+|   .+++++=.++++.+++..+ ..+|-+|. +++.--++.-+..|-++|
T Consensus        17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G   96 (292)
T PRK03170         17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG   96 (292)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998   6778888888888888765 34566655 678889999999999999


Q ss_pred             CCEEeecc
Q 014369          347 ISTVDCSV  354 (426)
Q Consensus       347 a~~VD~Sv  354 (426)
                      ++.|=..-
T Consensus        97 ~d~v~~~p  104 (292)
T PRK03170         97 ADGALVVT  104 (292)
T ss_pred             CCEEEECC
Confidence            99886654

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125

Probab=90.17  E-value=17  Score=38.20  Aligned_cols=144  Identities=14%  Similarity=0.071  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCccc--cccCHHHHHHHhHhcCCCcE---EEEeC---ChhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVP--QLADARDVMEAVRDLEGARL---PVLTP---NLKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p--~~~D~~~v~~~i~~~~~~~l---~~l~~---~~~di~~a~~~G  214 (426)
                      ..+.+..++=++.|.+.|++.|.+... ......+  ......++++.+...++...   ..+-|   +.+-++...++|
T Consensus       163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~  242 (430)
T TIGR01125       163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP  242 (430)
T ss_pred             ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence            457788888888888899988875421 1000000  01235667776665443322   22223   234566666764


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ...+++.+ +.|+.-++ .+|+.  ...+++.++++.+++++  +.+.++++  +|.|..   +.+.+.+.++.+.+.
T Consensus       243 ~~~~~l~iglES~s~~vLk-~m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~G~PgE---T~e~~~~t~~fl~~~  314 (430)
T TIGR01125       243 KVLPYLDIPLQHASDRILK-LMRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--VGFPGE---TEEDFQELLDFVEEG  314 (430)
T ss_pred             cccCceEeCCCCCCHHHHh-hCCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence              67787765 45554333 34442  12456677788888874  55555554  677765   467777777777888


Q ss_pred             CCCEEE
Q 014369          290 GCFEIS  295 (426)
Q Consensus       290 Gad~I~  295 (426)
                      +.+.+.
T Consensus       315 ~~~~~~  320 (430)
T TIGR01125       315 QFDRLG  320 (430)
T ss_pred             CCCEEe
Confidence            876554

This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=90.15  E-value=9.9  Score=39.39  Aligned_cols=140  Identities=14%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCC--CC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV--EG  272 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd--~~  272 (426)
                      +.|.++|.|.|.|...-        |+.  ++...+|-+.++=...+.++++.+|+. |  +.|.+-++..-+.+.  .+
T Consensus       151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~  230 (361)
T cd04747         151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL  230 (361)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence            46677899988776432        222  234456778888888888888888885 4  455555552100111  11


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CCH---HHHHHHHHHHHHhcCCceEEEEeCCCcC---------------
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYG---------------  333 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-~~P---~~v~~li~~l~~~~p~~~i~~H~HNd~G---------------  333 (426)
                      -.+++...++++.+.++|+|.|.+.-  |. ..|   ..-..+.+.+++.++. ++.+.+--++.               
T Consensus       231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~~-pv~~~G~i~~~~~~~~~~~~~~~~~~  307 (361)
T cd04747         231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTGL-PTITVGSVGLDGDFIGAFAGDEGASP  307 (361)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcCC-CEEEECCccccccccccccccccccc
Confidence            25788889999999999999887732  21 122   1123456667777654 45554432111               


Q ss_pred             cHHHHHHHHHHcC-CCEE
Q 014369          334 QSLPNILISLQMG-ISTV  350 (426)
Q Consensus       334 lA~ANaLaAl~aG-a~~V  350 (426)
                      .....+..+++.| ||.|
T Consensus       308 ~~~~~a~~~l~~g~~D~V  325 (361)
T cd04747         308 ASLDRLLERLERGEFDLV  325 (361)
T ss_pred             CCHHHHHHHHHCCCCCee
Confidence            2446677888876 7765

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=90.14  E-value=13  Score=38.71  Aligned_cols=137  Identities=20%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             HHHHHcCCCEEEEeccC---------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeee---cC--
Q 014369          208 EAAIAAGAKEVAIFASA---------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVV---GC--  268 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~---------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~f---g~--  268 (426)
                      ++|.++|.|.|.|...-         |+.  ++...+|-+.++=+..+.++++.+|+.   ++.|.+-++..-   +.  
T Consensus       157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~  236 (382)
T cd02931         157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ  236 (382)
T ss_pred             HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence            56678999988876421         111  223345778887777788888888774   344554444210   00  


Q ss_pred             ---C----CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----------C-CHHHHHHHHHHHHHhcCCceEEEEeC
Q 014369          269 ---P----VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV-----------G-TPGTVVPMLEAVMAVVPVEKLAVHLH  329 (426)
Q Consensus       269 ---p----d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~-----------~-~P~~v~~li~~l~~~~p~~~i~~H~H  329 (426)
                         |    ..+-.++++..++++.+.++|+|.|.+.-  |.           . .+.....+++.+++.+...-+.....
T Consensus       237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i  314 (382)
T cd02931         237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRM  314 (382)
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCC
Confidence               0    01124678999999999999999998841  21           1 11222456777888775422443333


Q ss_pred             CCcCcHHHHHHHHHHcC-CCEE
Q 014369          330 DTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       330 Nd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      ++    ...+..+++.| +|.|
T Consensus       315 ~~----~~~~~~~l~~g~~D~V  332 (382)
T cd02931         315 ED----PELASEAINEGIADMI  332 (382)
T ss_pred             CC----HHHHHHHHHcCCCCee
Confidence            33    45677788877 6655

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK06801 hypothetical protein; Provisional

Probab=90.14  E-value=2.8  Score=42.02  Aligned_cols=100  Identities=12%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHHHHHHHhcC
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li~~l~~~~p  320 (426)
                      .++++.+.|++.++-|-+     |.     -.+.+.+..+++++.+.+.. +|.+.... .+..+..+..++..+.++.+
T Consensus         5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~   74 (286)
T PRK06801          5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD   74 (286)
T ss_pred             cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence            356888899999987753     32     14678999999999999877 44554433 23455778888888888776


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  355 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~  355 (426)
                      . |+.+|.  |.|.-+.....|+++|++.|  |+|-.
T Consensus        75 v-pV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l  108 (286)
T PRK06801         75 I-PVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTL  108 (286)
T ss_pred             C-CEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCC
Confidence            4 566665  56777899999999999954  55544

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=90.01  E-value=18  Score=34.48  Aligned_cols=169  Identities=13%  Similarity=0.090  Sum_probs=85.9

Q ss_pred             HHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCEE
Q 014369          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKEV  218 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~V  218 (426)
                      +..-.+.|.++||+=.-......   +-...+++.+++..++.+.+|.|.               .+|++.+.+.|++.|
T Consensus        13 a~~A~~~GAdRiELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   89 (201)
T PF03932_consen   13 ALAAEAGGADRIELCSNLEVGGL---TPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGF   89 (201)
T ss_dssp             HHHHHHTT-SEEEEEBTGGGT-B------HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEE
T ss_pred             HHHHHHcCCCEEEECCCccCCCc---CcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCee
Confidence            34447899999999532111111   112345555655567778888752               146788889999988


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      .+-+-..+-        +.+  .+.++++++.|+  |+++.  +=.+|   |.. .+   ..+..+.+.++|+++|-=. 
T Consensus        90 VfG~L~~dg--------~iD--~~~~~~Li~~a~--~~~~t--FHRAf---D~~-~d---~~~al~~L~~lG~~rVLTS-  147 (201)
T PF03932_consen   90 VFGALTEDG--------EID--EEALEELIEAAG--GMPVT--FHRAF---DEV-PD---PEEALEQLIELGFDRVLTS-  147 (201)
T ss_dssp             EE--BETTS--------SB---HHHHHHHHHHHT--TSEEE--E-GGG---GGS-ST---HHHHHHHHHHHT-SEEEES-
T ss_pred             EEEeECCCC--------CcC--HHHHHHHHHhcC--CCeEE--EeCcH---HHh-CC---HHHHHHHHHhcCCCEEECC-
Confidence            877533331        111  345667777765  66665  33444   332 23   3345677888899988633 


Q ss_pred             CCCCCCH-HHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHH-cCCCEEeec
Q 014369          299 TIGVGTP-GTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQ-MGISTVDCS  353 (426)
Q Consensus       299 T~G~~~P-~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD~S  353 (426)
                        |...+ .+-.+.++.+.+.. +.+.|-.=+    |.-..|.-.-++ .|++.||+|
T Consensus       148 --Gg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg----Gv~~~nv~~l~~~tg~~~~H~s  199 (201)
T PF03932_consen  148 --GGAPTALEGIENLKELVEQAKGRIEIMPGG----GVRAENVPELVEETGVREIHGS  199 (201)
T ss_dssp             --TTSSSTTTCHHHHHHHHHHHTTSSEEEEES----S--TTTHHHHHHHHT-SEEEET
T ss_pred             --CCCCCHHHHHHHHHHHHHHcCCCcEEEecC----CCCHHHHHHHHHhhCCeEEeec
Confidence              33322 12223333343333 222233322    444556555555 899999986

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB

Probab=89.95  E-value=17  Score=38.42  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=86.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC--CC---CCccccccCHHHHHHHhHhcCCCc---EEEEeCC---hhhHHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF--VS---PKWVPQLADARDVMEAVRDLEGAR---LPVLTPN---LKGFEAAIA  212 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~--~s---~~~~p~~~D~~~v~~~i~~~~~~~---l~~l~~~---~~di~~a~~  212 (426)
                      ..+.+..++-++.|.+.|++.|-+...  ..   .+..+...+..++++.+...++..   +..+-|.   .+-++...+
T Consensus       173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~  252 (438)
T TIGR01574       173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFAN  252 (438)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHh
Confidence            578898898899999999987766421  11   000001113455666665444432   2222232   345666667


Q ss_pred             cC--CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       213 ~G--v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +|  ...+++.+ +.|+.-++. +|+..  ..+.+.++++.+++.  |+.+.++++  +|.|..   +++.+.+.++.+.
T Consensus       253 ~g~~~~~l~iglQSgsd~vLk~-m~R~~--t~~~~~~~v~~ir~~~~~i~i~~d~I--vG~PgE---t~ed~~~tl~~i~  324 (438)
T TIGR01574       253 NPKLCKSMHLPVQSGSSEILKL-MKRGY--TREWYLNLVRKLRAACPNVSISTDII--VGFPGE---TEEDFEETLDLLR  324 (438)
T ss_pred             CCCccCceeeCCCcCCHHHHHh-cCCCC--CHHHHHHHHHHHHHhCCCCeEeeCEE--EeCCCC---CHHHHHHHHHHHH
Confidence            77  78888886 456655543 54421  223445666667766  666666666  566765   4677777788888


Q ss_pred             hCCCCEEEE
Q 014369          288 DMGCFEISL  296 (426)
Q Consensus       288 ~~Gad~I~l  296 (426)
                      +.+.+.+.+
T Consensus       325 ~~~~~~~~~  333 (438)
T TIGR01574       325 EVEFDSAFS  333 (438)
T ss_pred             hcCCCeeee
Confidence            888775553

Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type

Probab=89.91  E-value=27  Score=36.40  Aligned_cols=219  Identities=17%  Similarity=0.167  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCH---HHHHHHhHh-c--CCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-L--EGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---~~v~~~i~~-~--~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +...-.+.++.|.++|++.||+...-   ..|--.+.   +...+.+++ +  .++++.+++.|...-.. ...|    .
T Consensus        30 ~~~~~~e~i~~la~~GfdgVE~~~~d---l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~-~~~g----~  101 (382)
T TIGR02631        30 TALDPVEAVHKLAELGAYGVTFHDDD---LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPV-FKDG----G  101 (382)
T ss_pred             CCcCHHHHHHHHHHhCCCEEEecccc---cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcc-ccCC----C
Confidence            44456788999999999999986210   11110111   111222321 1  35555555554210000 0001    1


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH--------HHHHHHHHHHHhCCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP--------SKVAYVAKELHDMGC  291 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~--------~~l~~~~~~l~~~Ga  291 (426)
                      + .+.++.        -++.+++.+++.+++|+++|.+..+......+.+.....+.        +.+.++++.+.+.|.
T Consensus       102 l-as~d~~--------vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~  172 (382)
T TIGR02631       102 F-TSNDRS--------VRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGY  172 (382)
T ss_pred             C-CCCCHH--------HHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            1 111111        13578899999999999999985422211111111111111        233334444455542


Q ss_pred             C-EEEEcCCC-----C--CCCHHHHHHHHHHHHHhcCC---ceEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecccCC-C
Q 014369          292 F-EISLGDTI-----G--VGTPGTVVPMLEAVMAVVPV---EKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVAGL-G  358 (426)
Q Consensus       292 d-~I~l~DT~-----G--~~~P~~v~~li~~l~~~~p~---~~i~~-H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl-G  358 (426)
                      . .|.|-=.-     +  +-++.++..+++.+-.  |.   +.+.+ |. +--|.-++-++.-...+-+.++.=++.. |
T Consensus       173 GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~~--pn~vgl~lDvgH~-~~~g~n~~~~i~~~l~~~kl~HvhlnD~~g  249 (382)
T TIGR02631       173 GLRFALEPKPNEPRGDILLPTVGHALAFIETLER--PELFGLNPETGHE-QMAGLNFTHGIAQALWAGKLFHIDLNGQRG  249 (382)
T ss_pred             CcEEEEccCCCCCCcceecCCHHHHHHHHHHcCC--ccceeEEEechhH-hhcCCCHHHHHHHHHhCCCEEEEecCCCCC
Confidence            2 35552221     1  3456677777766532  32   12333 33 3345555555552222445555555542 2


Q ss_pred             ---CCCCCCCCCCcccHH-HHHHHHHhCCCC
Q 014369          359 ---GCPYAKGASGNVATE-DVVYMLSGLGVE  385 (426)
Q Consensus       359 ---ecP~a~graGNa~lE-evv~~L~~lG~~  385 (426)
                         +.-+.+| .|+.... +++..|+..|++
T Consensus       250 ~~~D~hL~~G-~G~l~~~~~~l~~L~~~GY~  279 (382)
T TIGR02631       250 IKFDQDLRFG-HGDLKAAFFLVDLLESGGYQ  279 (382)
T ss_pred             CCccCCcCCC-CCCHHHHHHHHHHHHHCCCC
Confidence               1223345 8999988 599999987765

This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=89.90  E-value=12  Score=39.28  Aligned_cols=108  Identities=8%  Similarity=0.072  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHH-hc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----CC-----CC---C
Q 014369          237 IEDSLVRYRAVAHAAK-VL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DT-----IG---V  302 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak-~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----DT-----~G---~  302 (426)
                      .+..++.+    +.+| +. ...+.+.|+        +..+++.+.++++.+.++|+|.|.|-    .+     .|   .
T Consensus        97 ~~~~l~~i----~~~k~~~~~~pvIaSi~--------~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g  164 (385)
T PLN02495         97 FETMLAEF----KQLKEEYPDRILIASIM--------EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG  164 (385)
T ss_pred             HHHHHHHH----HHHHhhCCCCcEEEEcc--------CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc
Confidence            44455443    3343 33 346665553        22467999999999999999966552    22     11   1


Q ss_pred             CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE---eecccCC
Q 014369          303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV---DCSVAGL  357 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V---D~Sv~Gl  357 (426)
                      -.|+.+.++++.+++... +||.+-.=-+..-=..-+.+|.++||+.|   ++...++
T Consensus       165 q~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~  221 (385)
T PLN02495        165 QDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVM  221 (385)
T ss_pred             cCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCccc
Confidence            479999999999988653 34555544444332344455788999965   4444344

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=89.90  E-value=8.4  Score=38.81  Aligned_cols=75  Identities=12%  Similarity=0.042  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCCE-EE-EcCCCCCCCHHHHHHHHHHHHH
Q 014369          242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFE-IS-LGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad~-I~-l~DT~G~~~P~~v~~li~~l~~  317 (426)
                      +...+.++.|++.|.....     +-.|.-.+.+.+.+.+..+.+.++  +... || ++...|.-.|.+   +++.|. 
T Consensus        90 ~~ai~~a~~A~~~Gad~vl-----v~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~---~l~~L~-  160 (309)
T cd00952          90 RDTIARTRALLDLGADGTM-----LGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRA---AWAELA-  160 (309)
T ss_pred             HHHHHHHHHHHHhCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHH---HHHHHh-
Confidence            4455677788888987431     224544455678888888777664  2443 33 677777655533   334443 


Q ss_pred             hcCCceEEE
Q 014369          318 VVPVEKLAV  326 (426)
Q Consensus       318 ~~p~~~i~~  326 (426)
                      ..|.+ +++
T Consensus       161 ~~pni-vgi  168 (309)
T cd00952         161 QIPQV-VAA  168 (309)
T ss_pred             cCCCE-EEE
Confidence            35653 444

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=89.86  E-value=2.4  Score=44.10  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-------CCCCHHHHHHHHHH
Q 014369          242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------GVGTPGTVVPMLEA  314 (426)
Q Consensus       242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-------G~~~P~~v~~li~~  314 (426)
                      +.+.++++.+|+.+..+-  +          |.++....++++.+.++|++.|.+-.|+       |...|..+.++++.
T Consensus       119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~  186 (369)
T TIGR01304       119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE  186 (369)
T ss_pred             HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence            445667777777763222  1          2345677889999999999999987653       55678876666654


Q ss_pred             HHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       315 l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +    +. ++- +  .+ -.....++.++++||+.|.
T Consensus       187 ~----~I-PVI-~--G~-V~t~e~A~~~~~aGaDgV~  214 (369)
T TIGR01304       187 L----DV-PVI-A--GG-VNDYTTALHLMRTGAAGVI  214 (369)
T ss_pred             C----CC-CEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence            3    32 343 2  22 3445667888999999988

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=89.82  E-value=26  Score=36.03  Aligned_cols=231  Identities=21%  Similarity=0.250  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      +.+..++-+..|.++|.+.+-+..+       .+.+++++ ..+++..++.+.+ +-.+.+-.-.+.++|++.+||--. 
T Consensus        34 Dv~aTv~QI~~L~~aG~dIVRvtv~-------~~e~A~A~-~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPG-  104 (361)
T COG0821          34 DVEATVAQIKALERAGCDIVRVTVP-------DMEAAEAL-KEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPG-  104 (361)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEecC-------CHHHHHHH-HHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCc-
Confidence            3455577788999999999999853       34444443 3444323444443 223433334456789999999522 


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCEE
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVA----YVAKELHDMGCFEI  294 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l~----~~~~~l~~~Gad~I  294 (426)
                             |++.     -+++.++|+.||++|+.++.-+-  +|+-+.      +...+|-+.    +-++.+.+.|-+.|
T Consensus       105 -------Nig~-----~~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i  170 (361)
T COG0821         105 -------NIGF-----KDRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDI  170 (361)
T ss_pred             -------ccCc-----HHHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence                   3332     23788999999999999994332  333221      011333332    24566777887754


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEeCCCcCcHHHH------HHHH-HHcCC-CEEeecccCCCCCCCCC
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPN------ILIS-LQMGI-STVDCSVAGLGGCPYAK  364 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~--p~~~i~~H~HNd~GlA~AN------aLaA-l~aGa-~~VD~Sv~GlGecP~a~  364 (426)
                      .+.  +-...|..+-+-.+.|.+..  |- +|++-   --|++..-      ++.+ +..|+ |.|-+|+.+        
T Consensus       171 ~iS--~K~Sdv~~~v~aYr~lA~~~dyPL-HLGvT---EAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~--------  236 (361)
T COG0821         171 KVS--VKASDVQLMVAAYRLLAKRCDYPL-HLGVT---EAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTA--------  236 (361)
T ss_pred             EEE--EEcCCHHHHHHHHHHHHHhcCCCc-cccee---cccCcccceehHHHHHHHHHHhcCCceEEEecCC--------
Confidence            442  22334444444444444433  31 23331   13444322      2222 35564 467777763        


Q ss_pred             CCCCcccHHHHHHH---HHhCCCCC-C-----------cChhhHHHHHHHHHHHhCCCCCCCCcccchh
Q 014369          365 GASGNVATEDVVYM---LSGLGVET-N-----------VDLRKLMLAGDFINKHLGRPSGSKTAIALNR  418 (426)
Q Consensus       365 graGNa~lEevv~~---L~~lG~~~-~-----------iDl~~L~~la~~v~~~~g~~~~~~~pivG~~  418 (426)
                           -|+||+...   |+.+|+.. +           ...+-+..+.+..++..+.+.|=+.++.|.-
T Consensus       237 -----~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCV  300 (361)
T COG0821         237 -----DPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCV  300 (361)
T ss_pred             -----CchhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeE
Confidence                 236776654   44566541 2           2334444455555666788888888877753

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=89.76  E-value=3.3  Score=43.98  Aligned_cols=72  Identities=11%  Similarity=0.075  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      +..+-++.+.++|++.|.+--+-|  .-..+.+.|+.+++.+|+.+|.+    -..+-...+..++++||+.|.++++
T Consensus       224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g  295 (450)
T TIGR01302       224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG  295 (450)
T ss_pred             hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence            344556688899999988844444  33578899999999998767666    3345557788899999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=89.75  E-value=7.6  Score=41.77  Aligned_cols=218  Identities=17%  Similarity=0.173  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      ++..+.++.|.+.|++.|-+-.-...     .....+.++.++ ..|++.+.+ =+-+.++.+.++++|+|.|.+.+..-
T Consensus       226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g  300 (479)
T PRK07807        226 GDVAAKARALLEAGVDVLVVDTAHGH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG  300 (479)
T ss_pred             hhHHHHHHHHHHhCCCEEEEeccCCc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence            44568999999999998766321100     011234444454 345554444 23567888999999999999776541


Q ss_pred             hHHH-hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 014369          226 EAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT  304 (426)
Q Consensus       226 d~~~-~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~  304 (426)
                      -+-- +...+.+. ..+..+.++.+.|++.|.+|.+         +.+-..+..+   ++.+ .+||+.+.+.-..-   
T Consensus       301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via---------~ggi~~~~~~---~~al-~~ga~~v~~g~~~a---  363 (479)
T PRK07807        301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWA---------DGGVRHPRDV---ALAL-AAGASNVMIGSWFA---  363 (479)
T ss_pred             cccccccccCCch-hHHHHHHHHHHHHHhcCCcEEe---------cCCCCCHHHH---HHHH-HcCCCeeeccHhhc---
Confidence            1100 11122233 3567778888889998987752         4454555553   3333 48999887653321   


Q ss_pred             HHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC--------cccH
Q 014369          305 PGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG--------NVAT  372 (426)
Q Consensus       305 P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG--------Na~l  372 (426)
                               . ..+.|...+    +-..-.-+|||..-++..-..+-+++.....+.    +|-|-.|        -.++
T Consensus       364 ---------g-~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~----~~eGv~~~~~~~~~~~g~~  429 (479)
T PRK07807        364 ---------G-TYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKAL----FEEGISTSRMYLDPGRPGV  429 (479)
T ss_pred             ---------c-CccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCC----CCCCccceeeeccCCCCCH
Confidence                     1 233454222    223334689997665542111222332211110    1111111        2345


Q ss_pred             HHHHHHHH----h-CCCCCCcChhhHHHHHHHHH
Q 014369          373 EDVVYMLS----G-LGVETNVDLRKLMLAGDFIN  401 (426)
Q Consensus       373 Eevv~~L~----~-lG~~~~iDl~~L~~la~~v~  401 (426)
                      .+++..|.    . +++--.-+++.|.+-++++.
T Consensus       430 ~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~  463 (479)
T PRK07807        430 EDLLDHITSGVRSSCTYAGARTLAEFHERAVVGV  463 (479)
T ss_pred             HHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEE
Confidence            55555554    2 45544567777776665543

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=89.67  E-value=7  Score=41.14  Aligned_cols=213  Identities=13%  Similarity=0.133  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHhCCCCeEEE--ecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369          148 GVKVELIRRLVSSGLPVVEA--TSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEv--G~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .+-.+.++.|.++|++.|=+  +...+       ....+.++.++ ..|+..+.+ -+.+.++.+.+.++|+|.|.+.+.
T Consensus       152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~-------~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g  224 (404)
T PRK06843        152 IDTIERVEELVKAHVDILVIDSAHGHS-------TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIG  224 (404)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCC-------hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCC
Confidence            44678999999999998875  33221       12334455555 356666533 457889999999999999987542


Q ss_pred             CChHHH-hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          224 ASEAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       224 ~Sd~~~-~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                      .--++. +...+... ..+..+..+.+.+++.+++|.+         +.+-.++.++.+    +..+||+.+-+.--.- 
T Consensus       225 ~Gs~c~tr~~~g~g~-p~ltai~~v~~~~~~~~vpVIA---------dGGI~~~~Di~K----ALalGA~aVmvGs~~a-  289 (404)
T PRK06843        225 PGSICTTRIVAGVGV-PQITAICDVYEVCKNTNICIIA---------DGGIRFSGDVVK----AIAAGADSVMIGNLFA-  289 (404)
T ss_pred             CCcCCcceeecCCCC-ChHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEEcceee-
Confidence            211110 11112111 1233444555566666766541         344455665443    3359999887653321 


Q ss_pred             CCHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHHHHHcC--CCEEeecccCCCCCCCCCCCCCcc----cHH
Q 014369          303 GTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILISLQMG--ISTVDCSVAGLGGCPYAKGASGNV----ATE  373 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLaAl~aG--a~~VD~Sv~GlGecP~a~graGNa----~lE  373 (426)
                                 . -++.|...+   +-+.-.-+|||..-   |++.|  -+++......- .=-.+-|-.|.+    ++.
T Consensus       290 -----------g-t~Espg~~~~~~g~~~K~yrGmgS~~---Am~~~~~~ry~~~~~~~~-~~~v~eGveg~v~~~G~v~  353 (404)
T PRK06843        290 -----------G-TKESPSEEIIYNGKKFKSYVGMGSIS---AMKRGSKSRYFQLENNEP-KKLVPEGIEGMVPYSGKLK  353 (404)
T ss_pred             -----------e-eecCCCcEEEECCEEEEEEeccchHH---HHhccccccccccccccc-cccCCCccEEEecCCCCHH
Confidence                       1 123454222   12334457998654   44333  33443211000 000001112222    466


Q ss_pred             HHHHHHHh-----CCCCCCcChhhHHHHHH
Q 014369          374 DVVYMLSG-----LGVETNVDLRKLMLAGD  398 (426)
Q Consensus       374 evv~~L~~-----lG~~~~iDl~~L~~la~  398 (426)
                      +++..|..     +++--.-++..|.+=++
T Consensus       354 ~~~~~l~gglrs~m~y~Ga~~i~el~~~a~  383 (404)
T PRK06843        354 DILTQLKGGLMSGMGYLGAATISDLKINSK  383 (404)
T ss_pred             HHHHHHHHHHHHHhhccCCCcHHHHHhcCe
Confidence            76666642     56655567777776443

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=89.63  E-value=1.3  Score=43.22  Aligned_cols=117  Identities=21%  Similarity=0.266  Sum_probs=75.3

Q ss_pred             HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      +.+...++.+  .+++++.+. |+.+.++.|.+.|++.|-++...   +... ++...++.++++..++++|+++|+.|.
T Consensus       113 ~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~---yA~a-~~~~~~~el~~~~~aa~~a~~lGL~Vn  188 (239)
T PRK05265        113 DKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGP---YADA-KTEAEAAELERIAKAAKLAASLGLGVN  188 (239)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcC-CCcchHHHHHHHHHHHHHHHHcCCEEe
Confidence            3444444433  467777777 78899999999999999998642   2221 122335569999999999999999886


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----cCCCCCCCHHHHHHHHHHHH
Q 014369          260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVM  316 (426)
Q Consensus       260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-----~DT~G~~~P~~v~~li~~l~  316 (426)
                      +          +.-.+.+.+..+++   --+..+++|     ++.+=++.+..|+++.+.+.
T Consensus       189 A----------GHgLny~Nv~~i~~---ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~  237 (239)
T PRK05265        189 A----------GHGLNYHNVKPIAA---IPGIEELNIGHAIIARALFVGLEEAVREMKRLMD  237 (239)
T ss_pred             c----------CCCCCHHhHHHHhh---CCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            2          12345566555421   124566665     45555556666666665554

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=89.50  E-value=2.7  Score=42.21  Aligned_cols=82  Identities=11%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      .++.|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... ..++-+|.-.+..-++..+..|-++|
T Consensus        22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G  101 (303)
T PRK03620         22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG  101 (303)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence            3678999999999999999999999999988   5678888888888887764 34566666445666777788888999


Q ss_pred             CCEEee
Q 014369          347 ISTVDC  352 (426)
Q Consensus       347 a~~VD~  352 (426)
                      |+.|=.
T Consensus       102 adav~~  107 (303)
T PRK03620        102 ADGILL  107 (303)
T ss_pred             CCEEEE
Confidence            998844

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=89.45  E-value=6.5  Score=39.31  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CCCC-HHHHHHHHHHHHHhcC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGT-PGTVVPMLEAVMAVVP  320 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~~~-P~~v~~li~~l~~~~p  320 (426)
                      ++++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+...|--.--.  .+.. ...+..++..+.+.++
T Consensus         4 ~~~~l~~A~~~~yav~A-----fn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~   73 (282)
T TIGR01859         4 GKEILQKAKKEGYAVGA-----FNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS   73 (282)
T ss_pred             HHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence            46778889999987652     322     367889999999999998755543222  2222 4567788888888776


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                      .+|+.+|.  |.|.-+.....|+++|++  ++|.+-.
T Consensus        74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l  108 (282)
T TIGR01859        74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHL  108 (282)
T ss_pred             CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence            24788884  545567888999999987  4465544

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK05985 cytosine deaminase; Provisional

Probab=89.41  E-value=28  Score=35.79  Aligned_cols=199  Identities=16%  Similarity=0.148  Sum_probs=111.3

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC---CCcEEEEeC-----C---hhhHHHHHHcCCCEEEE
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLTP-----N---LKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~---~~~l~~l~~-----~---~~di~~a~~~Gv~~V~i  220 (426)
                      .-++.+.+.|+..+--=+.+.|.  +.+...+++++..+...   ...+..+.+     .   .+.++.+++.|.+.+..
T Consensus       102 ~~~~~~l~~G~t~vr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg  179 (391)
T PRK05985        102 ALARAAAAAGTTAMRSHVDVDPD--AGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGG  179 (391)
T ss_pred             HHHHHHHhcCcceEEeeEccCCC--cccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeC
Confidence            34666677899876221111111  11223445555544332   233333432     1   34577788888764433


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC---EEEEc
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF---EISLG  297 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad---~I~l~  297 (426)
                      +.+.+       .....+   +.+.++++.|+++|+.+.+.+-..      .......+.++++.+.+.|..   .+.-+
T Consensus       180 ~~p~~-------~~~~~~---~~l~~~~~~A~~~g~~i~~Hv~e~------~d~~~~~~~~~~e~~~~~g~~~~~~i~H~  243 (391)
T PRK05985        180 LDPAG-------IDGDPE---GQLDIVFGLAERHGVGIDIHLHEP------GELGAFQLERIAARTRALGMQGRVAVSHA  243 (391)
T ss_pred             CCCCC-------cCCCHH---HHHHHHHHHHHHhCCCcEEeeCCC------CCccHHHHHHHHHHHHHhCCCCCEehhhh
Confidence            31111       111122   445678889999999887665321      111234555666666677753   66666


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHH
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV  375 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEev  375 (426)
                      ...+.+.+.++.++++.+++. +. .+ +|+. ..+.++...-..+++|++..=+|=+..  .||.|...++ .++.+
T Consensus       244 ~~l~~~~~~~~~~~i~~lae~-g~-~v-~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD~~~--~~~~p~~~~~-~~~~~  314 (391)
T PRK05985        244 FCLGDLPEREVDRLAERLAEA-GV-AI-MTNA-PGSVPVPPVAALRAAGVTVFGGNDGIR--DTWWPYGNGD-MLERA  314 (391)
T ss_pred             hhhhcCCHHHHHHHHHHHHHc-CC-eE-EEeC-CCCCCCCCHHHHHHCCCeEEEecCCCC--CCCcCCCCCc-HHHHH
Confidence            677788898888888888774 32 22 3543 347788899999999998665554332  2555543444 34443

>PRK08185 hypothetical protein; Provisional

Probab=89.35  E-value=4.7  Score=40.46  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcCCCCCCCHHHHHHHHHHHHHhcCCce
Q 014369          245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTIGVGTPGTVVPMLEAVMAVVPVEK  323 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~DT~G~~~P~~v~~li~~l~~~~p~~~  323 (426)
                      +++++.|++.++-|-+     |.+     .+.+.+..+++++.+.+... |.+.-..--..|..+..++..+.+.... |
T Consensus         2 ~~~L~~A~~~~yaV~A-----fN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~v-P   70 (283)
T PRK08185          2 KELLKVAKEHQFAVGA-----FNV-----ADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPV-P   70 (283)
T ss_pred             HHHHHHHHHcCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCC-C
Confidence            4677889999987753     321     46789999999999999774 4444333222445578888877777653 5


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369          324 LAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG  356 (426)
Q Consensus       324 i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G  356 (426)
                      +.+  |=|.|.-......|+++|.+  ++|+|-..
T Consensus        71 V~l--HLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~  103 (283)
T PRK08185         71 FVI--HLDHGATIEDVMRAIRCGFTSVMIDGSLLP  103 (283)
T ss_pred             EEE--ECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence            665  45778888999999999977  66877543

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=89.26  E-value=2.2  Score=41.48  Aligned_cols=99  Identities=23%  Similarity=0.343  Sum_probs=65.3

Q ss_pred             HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      +.+...++++  .+++++.+. |+.+.++.|.+.|++.|-++...   +..+.-....++.++++.+++++|+++|+.|.
T Consensus       110 ~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn  186 (234)
T cd00003         110 EKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVN  186 (234)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence            3444445433  467777776 78899999999999999998642   11211112335569999999999999999886


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      +          +.-.+.+.+..+++   --+..+++|.
T Consensus       187 A----------GHgLny~Nv~~i~~---ip~i~ElnIG  211 (234)
T cd00003         187 A----------GHGLNYENVKPIAK---IPGIAELNIG  211 (234)
T ss_pred             c----------CCCCCHHHHHHHHh---CCCCeEEccC
Confidence            2          12355666666554   2345666653

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=89.16  E-value=8.8  Score=41.55  Aligned_cols=221  Identities=14%  Similarity=0.113  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe---CChhhHHHHHHcCCCEE
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT---PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~---~~~~di~~a~~~Gv~~V  218 (426)
                      .....++-.+.++.|.++|++.||+.  .++..-   ...-+.++.++. .++ .+.+.+   -+.++.+.++++|+|.|
T Consensus       236 ~av~~~~~~~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~aGAd~I  309 (502)
T PRK07107        236 AGINTRDYAERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAEAGADFV  309 (502)
T ss_pred             eccChhhHHHHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHHcCCCEE
Confidence            34555566889999999999999997  222110   001223334442 232 233333   45788999999999999


Q ss_pred             EEeccCChHHHhh-h--cCCCHHHHHHHHHHHH-HHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          219 AIFASASEAFSKS-N--INCSIEDSLVRYRAVA-HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       219 ~i~~~~Sd~~~~~-~--~~~s~~e~l~~~~~~v-~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      .+.+...-+-... +  .+...-.++..+.+++ +++++.|..+.  |..     |.+--   +--+++|++. +|||.+
T Consensus       310 ~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dgGir---~~gdi~KAla-~GA~~v  378 (502)
T PRK07107        310 KVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DGGIV---YDYHMTLALA-MGADFI  378 (502)
T ss_pred             EECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cCCCC---chhHHHHHHH-cCCCee
Confidence            8865443111111 2  2333334555444444 35566684432  221     34421   2234565554 999988


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhcCCceE---EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc--
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN--  369 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i---~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN--  369 (426)
                      -+.-..-            . ..+.|...+   +-+.-.-+|||...++.    .-++....-.   .=-.+-|-.|.  
T Consensus       379 m~G~~~a------------g-~~espg~~~~~~g~~~k~yrgm~s~~a~~----~~ry~~~~~~---~~~~~egv~~~v~  438 (502)
T PRK07107        379 MLGRYFA------------R-FDESPTNKVNINGNYMKEYWGEGSNRARN----WQRYDLGGDK---KLSFEEGVDSYVP  438 (502)
T ss_pred             eeChhhh------------c-cccCCCcEEEECCEEEEEeecccCHhhhh----cccccccccc---ccccCCccEEEec
Confidence            7654321            1 134454322   22444568998766553    1223210000   00000011111  


Q ss_pred             --ccHHHHHHHHHh-----CCCCCCcChhhHHHHHHHH
Q 014369          370 --VATEDVVYMLSG-----LGVETNVDLRKLMLAGDFI  400 (426)
Q Consensus       370 --a~lEevv~~L~~-----lG~~~~iDl~~L~~la~~v  400 (426)
                        =++++++..|..     +++--.-++..|.+-++++
T Consensus       439 ~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~~f~  476 (502)
T PRK07107        439 YAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKAKIT  476 (502)
T ss_pred             CCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCCeEE
Confidence              146666666542     5665556778777655544

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=89.16  E-value=3.3  Score=40.35  Aligned_cols=144  Identities=19%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH----HhHhc-CCCcEEEEeC-C--------hhh-HHHHH
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME----AVRDL-EGARLPVLTP-N--------LKG-FEAAI  211 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~----~i~~~-~~~~l~~l~~-~--------~~d-i~~a~  211 (426)
                      .+....-+.....+|+++|-+|++....+    ...-+.++    .++.. ++.++.+... .        ..+ .+.+.
T Consensus        66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~----~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~  141 (235)
T PF04476_consen   66 PGTASLAALGAAATGVDYVKVGLFGCKDY----DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA  141 (235)
T ss_pred             chHHHHHHHHHHhcCCCEEEEecCCCCCH----HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Confidence            34444445556678999999998754321    11222222    22222 2344433321 1        112 35678


Q ss_pred             HcCCCEEEEeccCChHHHhhhcCCCHHH--HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          212 AAGAKEVAIFASASEAFSKSNINCSIED--SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e--~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      ++|.+.+.+=.     ..|.  |.+.-+  ..+.+.+.++.||++|+.+-          .++....+++.    .|...
T Consensus       142 ~aG~~gvMlDT-----a~Kd--g~~L~d~~~~~~L~~Fv~~ar~~gL~~a----------LAGSL~~~di~----~L~~l  200 (235)
T PF04476_consen  142 EAGFDGVMLDT-----ADKD--GGSLFDHLSEEELAEFVAQARAHGLMCA----------LAGSLRFEDIP----RLKRL  200 (235)
T ss_pred             HcCCCEEEEec-----ccCC--CCchhhcCCHHHHHHHHHHHHHccchhh----------ccccCChhHHH----HHHhc
Confidence            89998777632     2222  222222  35567789999999998764          23444455544    34467


Q ss_pred             CCCEEEE------c-C-CCCCCCHHHHHHHHHHH
Q 014369          290 GCFEISL------G-D-TIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       290 Gad~I~l------~-D-T~G~~~P~~v~~li~~l  315 (426)
                      ++|.+.+      . | +.|...|+.|.++-+.+
T Consensus       201 ~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~  234 (235)
T PF04476_consen  201 GPDILGFRGAVCGGGDRRAGRIDPELVAALRALM  234 (235)
T ss_pred             CCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence            8776654      2 4 35899999988876543

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=89.13  E-value=2.8  Score=41.32  Aligned_cols=83  Identities=11%  Similarity=0.059  Sum_probs=69.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeC-CCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~H-Nd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.+.++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+... ..+|-+|.- ++..-++.-+..|.++|
T Consensus        16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G   95 (284)
T cd00950          16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG   95 (284)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998   5677888888888888775 456777775 57788899999999999


Q ss_pred             CCEEeecc
Q 014369          347 ISTVDCSV  354 (426)
Q Consensus       347 a~~VD~Sv  354 (426)
                      ++.|=..-
T Consensus        96 ~d~v~~~~  103 (284)
T cd00950          96 ADAALVVT  103 (284)
T ss_pred             CCEEEEcc
Confidence            99886653

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.13  E-value=20  Score=38.81  Aligned_cols=144  Identities=14%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC-CCCCc--cccccCHHHHHHHhHhcCCC---cEEEEeCC---hhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--VPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~--~p~~~D~~~v~~~i~~~~~~---~l~~l~~~---~~di~~a~~~G  214 (426)
                      ..+.+..++=++.|.+.|+..|.+.-- .+..+  ........++++.+..+++.   ++....|.   .+-++...++|
T Consensus       185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g  264 (502)
T PRK14326        185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETP  264 (502)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcC
Confidence            567888888888898889998876321 00000  00001233455555544443   33332232   33456666776


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ...+++.+ +.|+.-++. +|+.  ...+.+.++++.+++.  |+.+.++++  +|.|..+   .+.+.+.++.+.+.
T Consensus       265 ~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgET---~edf~~Tl~~i~~~  336 (502)
T PRK14326        265 NVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGET---EEDFQATLDVVREA  336 (502)
T ss_pred             CcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCCC---HHHHHHHHHHHHHc
Confidence              67888876 556654443 5553  2345566777788885  667777666  6778764   56667777777777


Q ss_pred             CCCEEE
Q 014369          290 GCFEIS  295 (426)
Q Consensus       290 Gad~I~  295 (426)
                      +.+.+.
T Consensus       337 ~~~~~~  342 (502)
T PRK14326        337 RFSSAF  342 (502)
T ss_pred             CCCEEE
Confidence            776443

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=89.11  E-value=24  Score=34.74  Aligned_cols=172  Identities=16%  Similarity=0.149  Sum_probs=101.5

Q ss_pred             HHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~  217 (426)
                      +..-.+.|.++||+=.-....+. |.    ..+++.+++..++.+.+|.|.               .+|++.+.+.|++.
T Consensus        14 a~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadG   89 (248)
T PRK11572         14 ALTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPG   89 (248)
T ss_pred             HHHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence            34457889999999532221111 21    244455554446777777742               24678888999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |.+-+-..+..      .+    .++++++++.|+  ++++.  +=.+|   |..+ ++.   +..+.+.++|+++|-=.
T Consensus        90 vV~G~L~~dg~------vD----~~~~~~Li~~a~--~~~vT--FHRAf---D~~~-d~~---~al~~l~~lG~~rILTS  148 (248)
T PRK11572         90 LVTGVLDVDGH------VD----MPRMRKIMAAAG--PLAVT--FHRAF---DMCA-NPL---NALKQLADLGVARILTS  148 (248)
T ss_pred             EEEeeECCCCC------cC----HHHHHHHHHHhc--CCceE--Eechh---hccC-CHH---HHHHHHHHcCCCEEECC
Confidence            88875443321      11    345667777774  55554  33445   3322 333   46778889999887532


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                        -|..+..+-.+.++.+.+......|-.    -=|.-..|+-.=++.|++.||.|-..
T Consensus       149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~----GgGV~~~Nv~~l~~tG~~~~H~s~~~  201 (248)
T PRK11572        149 --GQQQDAEQGLSLIMELIAASDGPIIMA----GAGVRLSNLHKFLDAGVREVHSSAGQ  201 (248)
T ss_pred             --CCCCCHHHHHHHHHHHHHhcCCCEEEe----CCCCCHHHHHHHHHcCCCEEeeCCCc
Confidence              333445666677777766554321211    23555567655568999999988653

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=89.10  E-value=12  Score=35.71  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             ChhhHHHHHHcCC-CEEEEeccCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          203 NLKGFEAAIAAGA-KEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       203 ~~~di~~a~~~Gv-~~V~i~~~~Sd~~~~~~~~~-s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +.+.++.+.+.|. +    .+.++|...+.. |. +.++.+.++.+.+    +  .+|.+.+   +      ..+.+.+.
T Consensus         8 ~~~ei~~~~~~~~i~----GvTTNPsll~k~-~~~~~~~~~~~i~~~~----~--~~v~~qv---~------~~~~e~~i   67 (211)
T cd00956           8 DLEEIKKASETGLLD----GVTTNPSLIAKS-GRIDFEAVLKEICEII----D--GPVSAQV---V------STDAEGMV   67 (211)
T ss_pred             CHHHHHHHHhcCCcC----ccccCHHHHHhc-CCcCHHHHHHHHHHhc----C--CCEEEEE---E------eCCHHHHH
Confidence            4566666666653 2    345566665543 44 5555555444443    2  2233222   1      14678888


Q ss_pred             HHHHHHHhC-CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          281 YVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       281 ~~~~~l~~~-Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +.++.+.+. |--.|-|+=|.      +-.+.++.|++.      +++++-+.=+...-+++|.++||++|.--++-+-.
T Consensus        68 ~~a~~l~~~~~~~~iKIP~T~------~gl~ai~~L~~~------gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~  135 (211)
T cd00956          68 AEARKLASLGGNVVVKIPVTE------DGLKAIKKLSEE------GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDD  135 (211)
T ss_pred             HHHHHHHHhCCCEEEEEcCcH------hHHHHHHHHHHc------CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhh
Confidence            889998887 54456666554      334456666554      23344444567788999999999998777776543


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCCCCCc
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGVETNV  388 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~~~~i  388 (426)
                          .|..|..-++++..+++.+|+++.+
T Consensus       136 ----~g~dg~~~i~~i~~~~~~~~~~tki  160 (211)
T cd00956         136 ----LGGDGMELIREIRTIFDNYGFDTKI  160 (211)
T ss_pred             ----cCCCHHHHHHHHHHHHHHcCCCceE
Confidence                2345666666777777777777554

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=89.06  E-value=3.1  Score=41.52  Aligned_cols=83  Identities=8%  Similarity=0.071  Sum_probs=71.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCC-CCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHH
Q 014369          271 EGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQ  344 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~G-ad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~  344 (426)
                      .+..|.+.+.+.++.+.+.| ++.|.+.-|+|=   +++++-.++++.+.+... ..+|-+|. |++.--++..+..|.+
T Consensus        15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~   94 (290)
T TIGR00683        15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE   94 (290)
T ss_pred             CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999 999999999874   778888889988888764 45788885 7888889999999999


Q ss_pred             cCCCEEeec
Q 014369          345 MGISTVDCS  353 (426)
Q Consensus       345 aGa~~VD~S  353 (426)
                      +||+.|=..
T Consensus        95 ~Gad~v~v~  103 (290)
T TIGR00683        95 LGYDCLSAV  103 (290)
T ss_pred             hCCCEEEEe
Confidence            999988663

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=88.95  E-value=3  Score=44.73  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      .+.++.+.++|++.|.+-++-|.  +..+.+.++.+++.+|+.+|.+    -.++-...+..++++||+.|++.+
T Consensus       230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~  298 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI  298 (486)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence            67788899999998765444344  5789999999999998767666    345566788999999999999654

>TIGR01064 pyruv_kin pyruvate kinase

Probab=88.94  E-value=32  Score=36.99  Aligned_cols=250  Identities=17%  Similarity=0.128  Sum_probs=139.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEEEeCChhhHH---HHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFE---AAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~~~~di~---~a~~~Gv~~V  218 (426)
                      .++..++.+| +.+.+.|++.|-+.+--++      .|-..+.+.+...  .++.+.+..-+.++++   ..++. .+  
T Consensus       168 ~ltekD~~Dl-~~~~~~~~d~I~lskV~sa------~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~d--  237 (473)
T TIGR01064       168 ALSEKDKKDL-KFGVEQGVDMVAASFVRTA------EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SD--  237 (473)
T ss_pred             CCCHHHHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CC--
Confidence            3666676665 5667899999877653332      2333334444432  2455666665554443   33333 45  


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE---EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV---SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v---~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      .+++...|+-..-  +  .++......+++..|+.+|+.+.+.-   .-+...|.-+|++..++..+    ...|+|.|.
T Consensus       238 gi~iG~gDL~~~l--g--~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~----v~~G~d~v~  309 (473)
T TIGR01064       238 GIMVARGDLGVEI--P--AEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANA----ILDGTDAVM  309 (473)
T ss_pred             cEEEchHHHHhhc--C--cHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHH----HHcCCCEEE
Confidence            5666666754443  3  25666677788999999999876311   00123555677777665554    468999888


Q ss_pred             E-cCCCCCCCHHHHHHHHHHHHHhcCCc-e-EE-E-EeC------CC--cCcHHHHHHHHHHcCCC-EEeecccCCCC--
Q 014369          296 L-GDTIGVGTPGTVVPMLEAVMAVVPVE-K-LA-V-HLH------DT--YGQSLPNILISLQMGIS-TVDCSVAGLGG--  359 (426)
Q Consensus       296 l-~DT~G~~~P~~v~~li~~l~~~~p~~-~-i~-~-H~H------Nd--~GlA~ANaLaAl~aGa~-~VD~Sv~GlGe--  359 (426)
                      | .||.=.-.|.+..+.+..+....-.. . .. + |..      ++  -.++.+...+|-..+++ +|--|-.|---  
T Consensus       310 ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~  389 (473)
T TIGR01064       310 LSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARL  389 (473)
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHH
Confidence            7 56666678988888888887654210 0 00 0 100      11  23455555667778887 66666665321  


Q ss_pred             ---C-CCCCCCCCcccHHHHHHHHHh-CCCCC------CcChhhHHHHHHHHHHHhCCCCCCCC
Q 014369          360 ---C-PYAKGASGNVATEDVVYMLSG-LGVET------NVDLRKLMLAGDFINKHLGRPSGSKT  412 (426)
Q Consensus       360 ---c-P~a~graGNa~lEevv~~L~~-lG~~~------~iDl~~L~~la~~v~~~~g~~~~~~~  412 (426)
                         + |-.|- -+-++-+.+...|.- .|+.+      .-|.+.+...+.......|.--+..+
T Consensus       390 vSr~rp~~PI-iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~  452 (473)
T TIGR01064       390 LSKYRPNAPI-IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDL  452 (473)
T ss_pred             HHhhCCCCCE-EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCE
Confidence               0 11111 233445677777765 36643      22555555544444444565444443

This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=88.90  E-value=27  Score=34.89  Aligned_cols=206  Identities=16%  Similarity=0.136  Sum_probs=126.0

Q ss_pred             CCCccEEEeCC---ccccCCC---CCC-CC-CHHHHHHHHHHHHhCCCCeEEEecC---CCCCccccccCHHHHHHHhHh
Q 014369          123 IPRFVKIVEVG---PRDGLQN---EKN-TV-PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRD  191 (426)
Q Consensus       123 ~p~~V~I~D~T---LRDG~Q~---~~~-~f-~~~~ki~I~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~~~v~~~i~~  191 (426)
                      ..+.++++|+.   .+.|...   .|- .+ +.++...+|+.+.++|.+.+--|-|   .||...-.+ . ++-+..+++
T Consensus        26 ~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl-g-e~gL~~l~~  103 (286)
T COG2876          26 VKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL-G-EEGLKLLKR  103 (286)
T ss_pred             ccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc-C-HHHHHHHHH
Confidence            45556777765   5555321   121 23 6788889999999999999988844   233222112 2 223333332


Q ss_pred             ---cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          192 ---LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       192 ---~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                         ..+..+..=+.+.++++.+.+. +|.+.|...     +++|        +    .+.+.+-+.+.+|-  +..-   
T Consensus       104 a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGAR-----NMQN--------F----~LLke~G~~~kPvL--LKRg---  160 (286)
T COG2876         104 AADETGLPVVTEVMDVRDVEAAAEY-ADILQVGAR-----NMQN--------F----ALLKEVGRQNKPVL--LKRG---  160 (286)
T ss_pred             HHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhccc-----chhh--------h----HHHHHhcccCCCeE--EecC---
Confidence               2233333334588899988887 787777532     1111        2    33444555566664  2221   


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC----CCCCCHHHH-HHHHHHHHHh--cCCceEEE-EeCCCcCcHHHHHH
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDT----IGVGTPGTV-VPMLEAVMAV--VPVEKLAV-HLHDTYGQSLPNIL  340 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT----~G~~~P~~v-~~li~~l~~~--~p~~~i~~-H~HNd~GlA~ANaL  340 (426)
                         --.+.++.+..++-+...|...|.||.-    .-..++... -.-|..+|+.  +|.+ +.. |.-+..-+=..-+.
T Consensus       161 ---~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVi-vDpSH~~Grr~lv~pla~  236 (286)
T COG2876         161 ---LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVI-VDPSHATGRRDLVEPLAK  236 (286)
T ss_pred             ---ccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEE-ECCCCcccchhhHHHHHH
Confidence               1246788888899999999988888863    223333221 1124455553  4642 333 88888999999999


Q ss_pred             HHHHcCCCEEeecccCC
Q 014369          341 ISLQMGISTVDCSVAGL  357 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~Gl  357 (426)
                      +|+.+|||.+-..+..=
T Consensus       237 AA~AaGAdglmiEVHp~  253 (286)
T COG2876         237 AAIAAGADGLMIEVHPD  253 (286)
T ss_pred             HHHhccCCeeEEEecCC
Confidence            99999999998887753

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional

Probab=88.90  E-value=15  Score=38.24  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=68.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCC
Q 014369          270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGIS  348 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~  348 (426)
                      ..+-.+++.-.+-++.+.+.+.+.+.|.--...-...++.++++.++..+|.. --.|.   +|.|. .+.+.++..|+|
T Consensus       188 VQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD  263 (366)
T PRK00112        188 VQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED-KPRYL---MGVGTPEDLVEGVARGVD  263 (366)
T ss_pred             eeCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCc-CCeEe---cCCCCHHHHHHHHHcCCC
Confidence            34556667667788889999999999998544457888999999999999742 22343   45555 789999999999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccH
Q 014369          349 TVDCSVAGLGGCPYAKGASGNVAT  372 (426)
Q Consensus       349 ~VD~Sv~GlGecP~a~graGNa~l  372 (426)
                      .+|++.-=.=.      |.|.+=+
T Consensus       264 ~FD~~~p~r~A------r~G~alt  281 (366)
T PRK00112        264 MFDCVMPTRNA------RNGTLFT  281 (366)
T ss_pred             EEeeCCccccc------cCCceeC
Confidence            99988754333      6665444

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=88.80  E-value=22  Score=33.73  Aligned_cols=178  Identities=18%  Similarity=0.120  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      ..-+++++.+.+.|++.+-+.-... ...  .-.+. ++.+.+.+..+.++.+  -+++.++++.+.+.|++.|.+-...
T Consensus        30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g--~~~~~-~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~  106 (233)
T PRK00748         30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAG--KPVNL-ELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA  106 (233)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccC--CcccH-HHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence            4668899999999999988864211 000  01123 3333333333444433  4578899999999999987654221


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v----~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                      -             +..+.+.++++...+. +.+...+    ....+-.   ..+...+.++++.+.++|++.|.+-|..
T Consensus       107 l-------------~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g~~---~~~~~~~~e~~~~~~~~g~~~ii~~~~~  169 (233)
T PRK00748        107 V-------------KNPELVKEACKKFPGK-IVVGLDARDGKVATDGWL---ETSGVTAEDLAKRFEDAGVKAIIYTDIS  169 (233)
T ss_pred             H-------------hCHHHHHHHHHHhCCC-ceeeeeccCCEEEEccCe---ecCCCCHHHHHHHHHhcCCCEEEEeeec
Confidence            0             1112233444333221 2221111    0000100   0112344567888889999977776543


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          301 --GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       301 --G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                        |...-. -.++++.+++..+. ++-..+.-.   ...-....++.| |+.|
T Consensus       170 ~~g~~~G~-d~~~i~~l~~~~~i-pvia~GGi~---~~~di~~~~~~g~~~gv  217 (233)
T PRK00748        170 RDGTLSGP-NVEATRELAAAVPI-PVIASGGVS---SLDDIKALKGLGAVEGV  217 (233)
T ss_pred             CcCCcCCC-CHHHHHHHHHhCCC-CEEEeCCCC---CHHHHHHHHHcCCccEE
Confidence              332221 14667777776653 455533211   123344455555 5543

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=88.80  E-value=11  Score=37.24  Aligned_cols=81  Identities=9%  Similarity=-0.043  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~  317 (426)
                      ++.+.+.++.|++.|.....     ...|.-...+.+.+.+..+.+.+. +..  .-.++...|...+.   ++++.|. 
T Consensus        82 ~~~~i~~a~~a~~~G~d~v~-----~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~---~~~~~L~-  152 (292)
T PRK03170         82 TAEAIELTKFAEKAGADGAL-----VVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILP---ETVARLA-  152 (292)
T ss_pred             HHHHHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCH---HHHHHHH-
Confidence            34455666778888886431     224544455667777777776653 333  22345566765553   3444553 


Q ss_pred             hcCCceEEE-EeCCC
Q 014369          318 VVPVEKLAV-HLHDT  331 (426)
Q Consensus       318 ~~p~~~i~~-H~HNd  331 (426)
                      ..|.+ +++ ..+.|
T Consensus       153 ~~p~v-~giK~s~~d  166 (292)
T PRK03170        153 EHPNI-VGIKEATGD  166 (292)
T ss_pred             cCCCE-EEEEECCCC
Confidence            45753 555 34444

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=88.78  E-value=8.6  Score=34.84  Aligned_cols=118  Identities=12%  Similarity=0.026  Sum_probs=64.5

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-C--CCCC------HH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-E--GAIP------PS  277 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-~--~r~~------~~  277 (426)
                      ++.+.++|++.|.+.........         +....+.++.+.++++|+.+...-........ .  ....      .+
T Consensus         1 l~~~~~~G~~~vE~~~~~~~~~~---------~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   71 (213)
T PF01261_consen    1 LEAAAEAGFDGVELRFDDGQPWD---------EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE   71 (213)
T ss_dssp             HHHHHHTTHSEEEEEHHHHSHHT---------HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred             ChHHHHcCCCEEEEecCCCcccc---------cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence            46788899998888754221110         00345667778888999986532222221111 0  1122      56


Q ss_pred             HHHHHHHHHHhCCCCEEEEc-----CCCCCCCHHHHHHHHHHHHHhcC-----CceEEEEeCCCcC
Q 014369          278 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVP-----VEKLAVHLHDTYG  333 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~-----DT~G~~~P~~v~~li~~l~~~~p-----~~~i~~H~HNd~G  333 (426)
                      .+.+.++.+..+|++.+.+.     .............+++.+++..+     ++.|.++.|....
T Consensus        72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~  137 (213)
T PF01261_consen   72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPF  137 (213)
T ss_dssp             HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSS
T ss_pred             HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCcc
Confidence            77888888888899988777     22233333444444444433221     2356666665544

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=88.77  E-value=9.2  Score=36.09  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             hhHHHHHHcCCCEEEE-eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAI-FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i-~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      +..+.+.++|++.|.| .-..+....+..+|.+.++-.+.+.++++..++. ++.+.+-+...+..+       +...++
T Consensus        71 ~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-------~~~~~~  143 (231)
T cd02801          71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-------EETLEL  143 (231)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-------hHHHHH


Q ss_pred             HHHHHhCCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHc-CCCEE
Q 014369          283 AKELHDMGCFEISLGDTIG--VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQM-GISTV  350 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G--~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~a-Ga~~V  350 (426)
                      ++.+.++|++.|.+-+-..  ...+..-.+.++.+++.... +|..    +=|. ....+..+++. ||+.|
T Consensus       144 ~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i-pvi~----~Ggi~~~~d~~~~l~~~gad~V  210 (231)
T cd02801         144 AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSI-PVIA----NGDIFSLEDALRCLEQTGVDGV  210 (231)
T ss_pred             HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC-eEEE----eCCCCCHHHHHHHHHhcCCCEE

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=88.77  E-value=3.3  Score=41.37  Aligned_cols=81  Identities=10%  Similarity=0.036  Sum_probs=64.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      +..|.+-+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+++... ..+|-+|.=.+..-++..+..|.++||
T Consensus        21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga  100 (296)
T TIGR03249        21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA  100 (296)
T ss_pred             CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999999998   4567888888888877764 345666653346677778888889999


Q ss_pred             CEEee
Q 014369          348 STVDC  352 (426)
Q Consensus       348 ~~VD~  352 (426)
                      +.+=.
T Consensus       101 dav~~  105 (296)
T TIGR03249       101 DGYLL  105 (296)
T ss_pred             CEEEE
Confidence            98733

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=88.77  E-value=19  Score=37.02  Aligned_cols=139  Identities=14%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC--CCCccccccCHHHHHHHhHhcCCCcEEEEeC-----ChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV--SPKWVPQLADARDVMEAVRDLEGARLPVLTP-----NLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~--s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----~~~di~~a~~~Gv~  216 (426)
                      .+..+.-++-.+...+.-=+-+|+=...  .|-..|-+   .++.+.++..++..+..+-.     +.+-++...++|+|
T Consensus       140 ~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLd  216 (414)
T COG2100         140 VVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLD  216 (414)
T ss_pred             EecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCc
Confidence            4567777777777777766777874321  22223333   56777788888877666532     35668888899999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      +|.+.+..=|.-.-..+---....++++.++++++.+.|+.|-.+=-..+|      ...++..++++.+.+.|+
T Consensus       217 RiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG------~ND~E~~~iIe~A~~iGa  285 (414)
T COG2100         217 RINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG------VNDDEMPKIIEWAREIGA  285 (414)
T ss_pred             eEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCC------cChHHHHHHHHHHHHhCC
Confidence            999997554443333332222345777888899999999987632221121      345667777777777665

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=88.76  E-value=5.1  Score=39.38  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=89.8

Q ss_pred             HHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcE---EEEeCCh-hhH---HHHHHc-CCCEEEEec
Q 014369          152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARL---PVLTPNL-KGF---EAAIAA-GAKEVAIFA  222 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l---~~l~~~~-~di---~~a~~~-Gv~~V~i~~  222 (426)
                      .+.+.|..+|.+.+-+..- .+..   + ...+.+++.++. .+.++   .+-+++- +.+   +.|.+. |.++|-+-+
T Consensus        24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEV   98 (248)
T cd04728          24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDK-SGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEV   98 (248)
T ss_pred             HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            3567788999998888642 1110   0 112233444432 11111   1222332 233   333443 778998886


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--  297 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--  297 (426)
                      -..+-           --+.+..+.+++|+++   |+.|..|..          .|+    ..++++.++|++.| -+  
T Consensus        99 i~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~vlpyc~----------dd~----~~ar~l~~~G~~~v-mPlg  152 (248)
T cd04728          99 IGDDK-----------TLLPDPIETLKAAEILVKEGFTVLPYCT----------DDP----VLAKRLEDAGCAAV-MPLG  152 (248)
T ss_pred             ecCcc-----------ccccCHHHHHHHHHHHHHCCCEEEEEeC----------CCH----HHHHHHHHcCCCEe-CCCC
Confidence            54442           1244556677777777   998764332          123    35788889999988 33  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ..+|....-.-.++|+.+++..+ +++-+-++=  +. -.-+..|++.||+.|
T Consensus       153 ~pIGsg~Gi~~~~~I~~I~e~~~-vpVI~egGI--~t-peda~~AmelGAdgV  201 (248)
T cd04728         153 SPIGSGQGLLNPYNLRIIIERAD-VPVIVDAGI--GT-PSDAAQAMELGADAV  201 (248)
T ss_pred             cCCCCCCCCCCHHHHHHHHHhCC-CcEEEeCCC--CC-HHHHHHHHHcCCCEE
Confidence            55555554444666777777632 233332211  11 256778899999955

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=88.63  E-value=12  Score=37.40  Aligned_cols=82  Identities=13%  Similarity=0.037  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-C-CCC--EEEEcCCCCCCCHHHHHHHHHHHH
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-M-GCF--EISLGDTIGVGTPGTVVPMLEAVM  316 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~-Gad--~I~l~DT~G~~~P~~v~~li~~l~  316 (426)
                      .+...+.+++|++.|.....     ...|.-.+.+.+.+....+.+.+ . +..  .-.++...|.-.|.+   ++..|.
T Consensus        82 t~~~i~la~~a~~~Gad~v~-----v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~---~i~~L~  153 (290)
T TIGR00683        82 LKEAVELGKYATELGYDCLS-----AVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIE---QFGELY  153 (290)
T ss_pred             HHHHHHHHHHHHHhCCCEEE-----EeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHH---HHHHHh
Confidence            34445677788888986431     12455555667778777777654 3 333  345566677655533   233343


Q ss_pred             HhcCCceEEE-EeCCCc
Q 014369          317 AVVPVEKLAV-HLHDTY  332 (426)
Q Consensus       317 ~~~p~~~i~~-H~HNd~  332 (426)
                      + .|.+ +++ +.+.|.
T Consensus       154 ~-~pnv-~giK~s~~d~  168 (290)
T TIGR00683       154 K-NPKV-LGVKFTAGDF  168 (290)
T ss_pred             c-CCCE-EEEEeCCCCH
Confidence            3 4653 555 345554

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=88.61  E-value=11  Score=42.73  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             HHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|...        +|+.  ++...+|-+.++=+..+.++++.+|+.   ++.|.+-|+..-.  ..+-.
T Consensus       558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~--~~~g~  635 (765)
T PRK08255        558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW--VEGGN  635 (765)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc--cCCCC
Confidence            3556789999888654        2443  234456778887777778888888774   3556555553210  12235


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH--------HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTP--------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P--------~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +++...++++.+.++|+|.|.+.  .|...+        .....+.+.+|+.+...-+.+-..++    ...+..+++.|
T Consensus       636 ~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~----~~~a~~~l~~g  709 (765)
T PRK08255        636 TPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISE----ADHVNSIIAAG  709 (765)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCC----HHHHHHHHHcC
Confidence            78888999999999999999884  121111        11234567777776542233333333    34456677766


Q ss_pred             -CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          347 -ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       347 -a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                       +|.|     ++|+       .=.+.-+-+...++++|++
T Consensus       710 ~~D~v-----~~gR-------~~l~dP~~~~~~~~~~~~~  737 (765)
T PRK08255        710 RADLC-----ALAR-------PHLADPAWTLHEAAEIGYR  737 (765)
T ss_pred             Cccee-----eEcH-------HHHhCccHHHHHHHHcCCC
Confidence             6655     4443       3333334455556666654

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=88.53  E-value=19  Score=35.77  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             CCCcEEEEeC-ChhhHHHHHHcCCCEEEEeccCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC
Q 014369          193 EGARLPVLTP-NLKGFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  269 (426)
Q Consensus       193 ~~~~l~~l~~-~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~--~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p  269 (426)
                      .+-++.+++. +--..+.+.++|+|.|-+-.+..-...-+  ....|.++++...+.+.+-++. -+ +.      ...|
T Consensus        13 ~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~-~~-vv------~DmP   84 (263)
T TIGR00222        13 QEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN-CL-IV------TDLP   84 (263)
T ss_pred             CCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC-ce-EE------eCCC
Confidence            3456666653 44555666789999888654332211111  1245788888777666555432 11 11      1245


Q ss_pred             CCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369          270 VEGAIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      ..+..+++.....+.++.+ +|++.|.|-|.      .++.++|+.+.+.
T Consensus        85 f~sy~~~e~a~~na~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~  128 (263)
T TIGR00222        85 FMSYATPEQALKNAARVMQETGANAVKLEGG------EWLVETVQMLTER  128 (263)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence            5554468777776766655 99999999996      4456667776653

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=88.51  E-value=9.6  Score=41.13  Aligned_cols=135  Identities=13%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH---HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA---KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A---k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ++.-...|.|.+..+.-..+      +..+.+++-+.+.+..+.+   ++.--.-.   ...|| +..|-..++.-.+-+
T Consensus       108 i~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~---~~l~g-iVQGg~~~dLR~~sa  177 (487)
T PRK13533        108 LEFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGD---MLWVA-PVQGGTYPDLREESA  177 (487)
T ss_pred             HHHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccC---ccEEE-EecCCCCHHHHHHHH
Confidence            44444578887776643222      2233444444444443333   32110000   01122 345667788888899


Q ss_pred             HHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeecccC
Q 014369          284 KELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +.+.++|.+.+.|.-.+..+   ...++.+++..++..+| +.++.+     +|.| ..+...++..|+|.+|++..-
T Consensus       178 ~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL-----~GvG~P~~i~~~V~lGvDlFD~v~pt  250 (487)
T PRK13533        178 REASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHL-----FGAGHPMMFALAVALGCDLFDSAAYA  250 (487)
T ss_pred             HHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEE-----eCCCCHHHHHHHHHhCCCceeccHHH
Confidence            99999999999988765555   56889999999999986 444433     3555 368999999999999987643

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=88.50  E-value=4.3  Score=43.55  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=13.3

Q ss_pred             cChhhHHHHHHHHHHHhCCCCC
Q 014369          388 VDLRKLMLAGDFINKHLGRPSG  409 (426)
Q Consensus       388 iDl~~L~~la~~v~~~~g~~~~  409 (426)
                      .....+.++.+.+.+..++|+.
T Consensus       179 l~P~~v~~Lv~~lk~~~~vpI~  200 (467)
T PRK14041        179 LTPKRAYELVKALKKKFGVPVE  200 (467)
T ss_pred             cCHHHHHHHHHHHHHhcCCceE
Confidence            3556666666666666655443

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=88.43  E-value=23  Score=34.17  Aligned_cols=111  Identities=25%  Similarity=0.284  Sum_probs=67.2

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhc-CC-ceE--EEEeCCCcCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PV-EKL--AVHLHDTYGQ  334 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~-p~-~~i--~~H~HNd~Gl  334 (426)
                      ++.+.|.|.+. ...+.-..-++.+.+.|++.|-+.=-+|...   ...+.+-++.+++.. |. +++  +.--=++..+
T Consensus        60 v~tVigFP~G~-~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i  138 (221)
T PRK00507         60 VCTVIGFPLGA-NTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEK  138 (221)
T ss_pred             EEEEecccCCC-ChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHH
Confidence            45556778754 3344434446678889999888765555432   355666666666643 31 233  2222233333


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                       ..-+..++++|+++|-++- |++        +|.+.+|++-.+.+..+
T Consensus       139 -~~a~~~~~~agadfIKTsT-G~~--------~~gat~~~v~~m~~~~~  177 (221)
T PRK00507        139 -VKACEIAKEAGADFVKTST-GFS--------TGGATVEDVKLMRETVG  177 (221)
T ss_pred             -HHHHHHHHHhCCCEEEcCC-CCC--------CCCCCHHHHHHHHHHhC
Confidence             4556678999999887664 343        35588888887776544

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.42  E-value=2.8  Score=40.20  Aligned_cols=70  Identities=13%  Similarity=0.112  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+++...++++.+.+.|++.|-+.    .-+| ...+.|+.+++.+|+..|+...=-|.    .-+-.|+++||+++=+
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs   93 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS   93 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence            478999999999999999999987    4556 56677899999999877888666555    6678899999997743

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.41  E-value=27  Score=36.94  Aligned_cols=143  Identities=17%  Similarity=0.193  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc---cccccCHHHHHHHhHhcCCC-cEE--EEeCC---hhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---VPQLADARDVMEAVRDLEGA-RLP--VLTPN---LKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~---~p~~~D~~~v~~~i~~~~~~-~l~--~l~~~---~~di~~a~~~G  214 (426)
                      ..+.+..++-++.|.+.|++.|-+....-..+   ++...+..++++.+..+++. ++.  ..-|.   .+-++...+++
T Consensus       175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~  254 (439)
T PRK14328        175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCD  254 (439)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCC
Confidence            46788888888889889999887753211001   11112345566666554443 232  22232   34456555665


Q ss_pred             --CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                        ...+++.+ +.|+.-++. +|+..  ..+.+.++++.+++.  ++.+.++++  +|.|..+   .+.+.+.++.+.++
T Consensus       255 ~~~~~l~iglQSgsd~vLk~-M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vG~PgET---~ed~~~tl~~i~~l  326 (439)
T PRK14328        255 KVCEHIHLPVQSGSNRILKK-MNRHY--TREYYLELVEKIKSNIPDVAITTDII--VGFPGET---EEDFEETLDLVKEV  326 (439)
T ss_pred             CcCceeeeCCCcCCHHHHHh-CCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCCC---HHHHHHHHHHHHhc
Confidence              67788875 556655443 55421  133445666677776  555655555  6778764   56666667667777


Q ss_pred             CCCEE
Q 014369          290 GCFEI  294 (426)
Q Consensus       290 Gad~I  294 (426)
                      +.+.+
T Consensus       327 ~~~~~  331 (439)
T PRK14328        327 RYDSA  331 (439)
T ss_pred             CCCcc
Confidence            65533

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=88.39  E-value=26  Score=34.12  Aligned_cols=139  Identities=16%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             ChhhHHHH---HHcCCCEEEEeccCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          203 NLKGFEAA---IAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       203 ~~~di~~a---~~~Gv~~V~i~~~~Sd~~-~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                      +.+++..+   ++.+++.|-|-++..... .+...|...=+-.+.+.++++.+++.+.+|.+-+-.-        .+...
T Consensus        78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~--------~~~~~  149 (231)
T TIGR00736        78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN--------CIPLD  149 (231)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC--------CCcch
Confidence            45554333   334778777755433221 1112222222234566777888887787776544311        13346


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      ..++++.+.++|++.|.+-... ...|.--.+.|+.+++.++.++|--  -++- ....-++..+++||+.|-.+
T Consensus       150 ~~~~a~~l~~aGad~i~Vd~~~-~g~~~a~~~~I~~i~~~~~~ipIIg--NGgI-~s~eda~e~l~~GAd~Vmvg  220 (231)
T TIGR00736       150 ELIDALNLVDDGFDGIHVDAMY-PGKPYADMDLLKILSEEFNDKIIIG--NNSI-DDIESAKEMLKAGADFVSVA  220 (231)
T ss_pred             HHHHHHHHHHcCCCEEEEeeCC-CCCchhhHHHHHHHHHhcCCCcEEE--ECCc-CCHHHHHHHHHhCCCeEEEc
Confidence            7789999999999999883211 1123235677888888774223222  1111 22356677777899987554

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=88.36  E-value=27  Score=34.23  Aligned_cols=191  Identities=21%  Similarity=0.266  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccccc--CHHHHHHHhHh-cC-CCcEEEEe--CCh----hhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRD-LE-GARLPVLT--PNL----KGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~~~v~~~i~~-~~-~~~l~~l~--~~~----~di~~a~~~  213 (426)
                      .++.+.-.++++.|.+.|++.|=+.-....  .+.+.  +..++++.+.+ .. ++.+.+-+  .+.    +-.+.|.+.
T Consensus        14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~   91 (281)
T cd00408          14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEA   91 (281)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHc
Confidence            578888899999999999999876432211  11222  22333333332 22 34443333  232    234566788


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCCC
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      |++.|.+..+.-       +..+.++.++.+.++++.   -++++..|-     .|..  ...+++.+.+++    + ..
T Consensus        92 Gad~v~v~pP~y-------~~~~~~~~~~~~~~ia~~---~~~pi~iYn-----~P~~tg~~l~~~~~~~L~----~-~~  151 (281)
T cd00408          92 GADGVLVVPPYY-------NKPSQEGIVAHFKAVADA---SDLPVILYN-----IPGRTGVDLSPETIARLA----E-HP  151 (281)
T ss_pred             CCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CccccCCCCCHHHHHHHh----c-CC
Confidence            999998875521       224566777766666654   466665432     3442  345677666655    3 45


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      ..+.++||.  ....++.++++.+    +. .+.+-.=+|     ...+.++..|++   +++.|          .+|.-
T Consensus       152 ~v~giK~s~--~d~~~~~~~~~~~----~~-~~~v~~G~d-----~~~~~~l~~G~~---G~i~~----------~~n~~  206 (281)
T cd00408         152 NIVGIKDSS--GDLDRLTRLIALL----GP-DFAVLSGDD-----DLLLPALALGAD---GAISG----------AANVA  206 (281)
T ss_pred             CEEEEEeCC--CCHHHHHHHHHhc----CC-CeEEEEcch-----HHHHHHHHcCCC---EEEeh----------HHhhC
Confidence            799999997  3566666665443    32 244432222     566778889985   34443          34566


Q ss_pred             HHHHHHHHHh
Q 014369          372 TEDVVYMLSG  381 (426)
Q Consensus       372 lEevv~~L~~  381 (426)
                      -|.++...+.
T Consensus       207 p~~~~~~~~~  216 (281)
T cd00408         207 PKLAVALYEA  216 (281)
T ss_pred             HHHHHHHHHH
Confidence            6666665553

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK08898 coproporphyrinogen III oxidase; Provisional

Probab=88.18  E-value=11  Score=39.17  Aligned_cols=105  Identities=15%  Similarity=0.091  Sum_probs=66.3

Q ss_pred             HHHHHHhHh-c---CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHH
Q 014369          183 RDVMEAVRD-L---EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAK  252 (426)
Q Consensus       183 ~~v~~~i~~-~---~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak  252 (426)
                      .++++.++. .   ++..+++-+ |   +.+.++...++|+++|.+.+..-+-..-..+|+  +.+    .+.++++.++
T Consensus        93 ~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~----~~~~~i~~~~  168 (394)
T PRK08898         93 DRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGA----EARAAIEIAA  168 (394)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHH----HHHHHHHHHH
Confidence            444445542 2   335666655 3   246788889999999999984433333334444  333    4455666677


Q ss_pred             hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          253 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       253 ~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      +.+..|.+.++  +|.|..   +.+.+.+-++.+.+++++.|++
T Consensus       169 ~~~~~v~~dlI--~GlPgq---t~~~~~~~l~~~~~l~p~~is~  207 (394)
T PRK08898        169 KHFDNFNLDLM--YALPGQ---TLDEALADVETALAFGPPHLSL  207 (394)
T ss_pred             HhCCceEEEEE--cCCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            76766766665  677754   4667777788889999987764

>PRK08444 hypothetical protein; Provisional

Probab=88.09  E-value=2  Score=44.28  Aligned_cols=75  Identities=12%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeCC-----------CcCcHHH
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHD-----------TYGQSLP  337 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~HN-----------d~GlA~A  337 (426)
                      ...+++.+.+.++.+.+.|+.+|.|.  .|.-   ..+.+.++++.+++.+|.    +|.|-           ..|+.+-
T Consensus        78 y~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~----i~i~a~s~~Ei~~~a~~~g~~~~  151 (353)
T PRK08444         78 YTMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPN----LHVKAMTAAEVDFLSRKFGKSYE  151 (353)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCC----ceEeeCCHHHHHHHHHHcCCCHH
Confidence            45788999999999999999999998  2321   236788999999998885    34444           7888887


Q ss_pred             HHHHHH-HcCCCEEee
Q 014369          338 NILISL-QMGISTVDC  352 (426)
Q Consensus       338 NaLaAl-~aGa~~VD~  352 (426)
                      -.+..+ +||++.+..
T Consensus       152 e~l~~LkeAGl~~~~g  167 (353)
T PRK08444        152 EVLEDMLEYGVDSMPG  167 (353)
T ss_pred             HHHHHHHHhCcccCCC
Confidence            777665 789886654

>PRK09058 coproporphyrinogen III oxidase; Provisional

Probab=88.05  E-value=11  Score=40.16  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             HHHHHHhHhc----CCCcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          183 RDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       183 ~~v~~~i~~~----~~~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                      ..+++.+++.    ++..+++=+ |   +.+-++...++|+.+|.+.+..-+-.....+|+..  ..+.+.+.++.+++.
T Consensus       134 ~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~  211 (449)
T PRK09058        134 ARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVAR  211 (449)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhC
Confidence            4455555532    234555544 3   24567888899999999987443333333455421  234455677788888


Q ss_pred             C-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          255 S-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       255 G-~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      | ..|.+.++  +|.|..   +.+.+.+-++.+.+++++.|.+
T Consensus       212 g~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~~~~is~  249 (449)
T PRK09058        212 DRAAVVCDLI--FGLPGQ---TPEIWQQDLAIVRDLGLDGVDL  249 (449)
T ss_pred             CCCcEEEEEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            8 56776666  677754   4677777788888999887764

>PLN02417 dihydrodipicolinate synthase

Probab=88.03  E-value=3.9  Score=40.57  Aligned_cols=101  Identities=11%  Similarity=0.155  Sum_probs=77.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM  345 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a  345 (426)
                      .+..|.+-+.++++.+.+.|++.|.+.-|.|   .++.++-.++++.+.+..+ ..+|-+|. +++.--++..+..|-++
T Consensus        16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~   95 (280)
T PLN02417         16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV   95 (280)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence            3678999999999999999999999999999   4567777888887777664 34566655 77888899999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      ||+.|=..-      ||-    ..++-|+++.+++.
T Consensus        96 Gadav~~~~------P~y----~~~~~~~i~~~f~~  121 (280)
T PLN02417         96 GMHAALHIN------PYY----GKTSQEGLIKHFET  121 (280)
T ss_pred             CCCEEEEcC------Ccc----CCCCHHHHHHHHHH
Confidence            999876543      221    12345777766653

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=88.03  E-value=3.7  Score=40.89  Aligned_cols=82  Identities=13%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             CCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369          272 GAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM  345 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a  345 (426)
                      +..|.+-+.++++.+.+ .|++.|.+.-|.|=   ++.++-.++++.+.+..+ ..+|-+|. +++.--++..+..|.++
T Consensus        19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~   98 (293)
T PRK04147         19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL   98 (293)
T ss_pred             CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence            57899999999999999 99999999999885   677888888888888765 35677777 78888899999999999


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      ||+.|=..
T Consensus        99 Gad~v~v~  106 (293)
T PRK04147         99 GYDAISAV  106 (293)
T ss_pred             CCCEEEEe
Confidence            99988655

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=88.02  E-value=3.7  Score=41.03  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=66.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      ++.|.+.+.++++.+.+.|++.|.+.-|.|=   ++-++-.++++.+.+... ..+|-+|. +++.--++..+..|.++|
T Consensus        16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G   95 (294)
T TIGR02313        16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG   95 (294)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence            6789999999999999999999999999995   455666777777776654 34666665 678888899999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=..
T Consensus        96 ad~v~v~  102 (294)
T TIGR02313        96 ADAAMVI  102 (294)
T ss_pred             CCEEEEc
Confidence            9977544

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3

Probab=88.02  E-value=22  Score=36.56  Aligned_cols=157  Identities=20%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCCC-------CCCHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEG-------AIPPS  277 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~~-------r~~~~  277 (426)
                      ++...++|+..||+=+-+++..   .=.++    ++.+.+++++||++|++|-..+-+.  +..|-.-       ..+.+
T Consensus        30 ~~ilk~~G~N~vRlRvwv~P~~---~g~~~----~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~  102 (332)
T PF07745_consen   30 FQILKDHGVNAVRLRVWVNPYD---GGYND----LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFD  102 (332)
T ss_dssp             HHHHHHTT--EEEEEE-SS-TT---TTTTS----HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHH
T ss_pred             HHHHHhcCCCeEEEEeccCCcc---cccCC----HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHH
Confidence            4566778998766665555432   11223    5566678889999999988655532  1111110       01233


Q ss_pred             --------HHHHHHHHHHhCCC--CEEEEcCC--CCCCCH-------HHHHHHH----HHHHHhcCCceEEEEeCCCcCc
Q 014369          278 --------KVAYVAKELHDMGC--FEISLGDT--IGVGTP-------GTVVPML----EAVMAVVPVEKLAVHLHDTYGQ  334 (426)
Q Consensus       278 --------~l~~~~~~l~~~Ga--d~I~l~DT--~G~~~P-------~~v~~li----~~l~~~~p~~~i~~H~HNd~Gl  334 (426)
                              +..++.++|.++|+  +.|.|..=  .|.+-|       ..+..|+    +++|+..|.++|.+|.-+-...
T Consensus       103 ~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~  182 (332)
T PF07745_consen  103 QLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN  182 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch
Confidence                    44456778888895  68888753  355553       4556664    6777777888999999876655


Q ss_pred             HHHHH-H-HHHHcC--CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          335 SLPNI-L-ISLQMG--ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       335 A~ANa-L-aAl~aG--a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      +.... . ....+|  .|+|=.|....     -   .|  +++.+...|+
T Consensus       183 ~~~~~~f~~l~~~g~d~DviGlSyYP~-----w---~~--~l~~l~~~l~  222 (332)
T PF07745_consen  183 DLYRWFFDNLKAAGVDFDVIGLSYYPF-----W---HG--TLEDLKNNLN  222 (332)
T ss_dssp             HHHHHHHHHHHHTTGG-SEEEEEE-ST-----T---ST---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcceEEEecCCC-----C---cc--hHHHHHHHHH
Confidence            22221 1 122345  34555555542     1   23  5666666554

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=87.99  E-value=8.7  Score=38.42  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             ChhhHH----HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 NLKGFE----AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 ~~~di~----~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      +.+++.    .+.+.|++.|.+=++.-....+...|....+..+.+.++++.+|+. .++|.+-+.     |     +.+
T Consensus       111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~~  180 (299)
T cd02940         111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NIT  180 (299)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----Cch
Confidence            555543    3344688877765443222122222222222234455666666553 466654332     2     234


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                      .+.++++.+.++|++.|.+.+|...
T Consensus       181 ~~~~~a~~~~~~Gadgi~~~Nt~~~  205 (299)
T cd02940         181 DIREIARAAKEGGADGVSAINTVNS  205 (299)
T ss_pred             hHHHHHHHHHHcCCCEEEEeccccc
Confidence            6788999999999999998877643

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=87.97  E-value=19  Score=37.39  Aligned_cols=142  Identities=21%  Similarity=0.124  Sum_probs=85.7

Q ss_pred             HHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|-|...        .|+..  +...+|-|.|+=+....++++.+|+. |  ..|.+-++..-. .+..-.
T Consensus       156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~-~~~~g~  234 (363)
T COG1902         156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF-FDGGGL  234 (363)
T ss_pred             HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc-CCCCCC
Confidence            5677899998887632        22222  23346778887777777777777764 3  335555654311 122246


Q ss_pred             CHHHHHHHHHHHHhCC-CCEEEEcCCCC----CCC---HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          275 PPSKVAYVAKELHDMG-CFEISLGDTIG----VGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~G-ad~I~l~DT~G----~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +++...++++.+.+.| +|.|.+.--.-    ...   |.-...+.+.++......-+.+-.    ......+..+++.|
T Consensus       235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~----i~~~~~Ae~~l~~g  310 (363)
T COG1902         235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGG----INDPEQAEEILASG  310 (363)
T ss_pred             CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCC----CCCHHHHHHHHHcC
Confidence            7899999999999999 68776643221    111   333445566666654321133222    44566778889998


Q ss_pred             -CCEEeecccCCCC
Q 014369          347 -ISTVDCSVAGLGG  359 (426)
Q Consensus       347 -a~~VD~Sv~GlGe  359 (426)
                       ||.|     |+|.
T Consensus       311 ~aDlV-----a~gR  319 (363)
T COG1902         311 RADLV-----AMGR  319 (363)
T ss_pred             CCCEE-----Eech
Confidence             6655     6665

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins

Probab=87.95  E-value=15  Score=35.69  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      ..+.+++|..+.                +....++-+..+..+.+.    ..+|+.  .+.+.+.+.++.+.+.|+|.|.
T Consensus       126 ~~vGVivP~~eQ----------------~~~~~~kW~~l~~~~~~a----~asPy~--~~~~~l~~Aa~~L~~~gadlIv  183 (221)
T PF07302_consen  126 HQVGVIVPLPEQ----------------IAQQAEKWQPLGNPVVVA----AASPYE--GDEEELAAAARELAEQGADLIV  183 (221)
T ss_pred             CeEEEEecCHHH----------------HHHHHHHHHhcCCCeEEE----EeCCCC--CCHHHHHHHHHHHHhcCCCEEE
Confidence            789999886542                223444556667666632    235664  3688999999999999999876


Q ss_pred             EcCCCCCCCHHHHHHHHHHH
Q 014369          296 LGDTIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       296 l~DT~G~~~P~~v~~li~~l  315 (426)
                      + |-.|+.  .+.+++++..
T Consensus       184 L-DCmGYt--~~~r~~~~~~  200 (221)
T PF07302_consen  184 L-DCMGYT--QEMRDIVQRA  200 (221)
T ss_pred             E-ECCCCC--HHHHHHHHHH
Confidence            6 888875  3455555543

In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=87.95  E-value=30  Score=34.37  Aligned_cols=189  Identities=13%  Similarity=0.092  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccccCHHHHHHHhH----hcCC-CcEEEEe--CCh----hhHHHHH
Q 014369          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLADARDVMEAVR----DLEG-ARLPVLT--PNL----KGFEAAI  211 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~----~~~~-~~l~~l~--~~~----~di~~a~  211 (426)
                      .++.+.-.++++.|.+ .|++-|=+.-....  .+.|. .+|..+.++    ...+ +.+.+-+  .+.    +-.+.|.
T Consensus        20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~   96 (293)
T PRK04147         20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE--AFLLS-TEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYAT   96 (293)
T ss_pred             CcCHHHHHHHHHHHHhcCCCCEEEECCCccc--cccCC-HHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHH
Confidence            4688888999999999 99998877432211  01222 233333333    2222 3333322  232    3346677


Q ss_pred             HcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhC
Q 014369          212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~  289 (426)
                      ++|++.+-+..|.-       +..+.++.++.+.++++.   .++++..     +..|..  ...+++.+.+++    +.
T Consensus        97 ~~Gad~v~v~~P~y-------~~~~~~~l~~~f~~va~a---~~lPv~i-----Yn~P~~tg~~l~~~~l~~L~----~~  157 (293)
T PRK04147         97 ELGYDAISAVTPFY-------YPFSFEEICDYYREIIDS---ADNPMIV-----YNIPALTGVNLSLDQFNELF----TL  157 (293)
T ss_pred             HcCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHHh---CCCCEEE-----EeCchhhccCCCHHHHHHHh----cC
Confidence            89999998876531       233556666666666554   3566653     223532  245677666655    32


Q ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc
Q 014369          290 GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       290 Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN  369 (426)
                       ...+.++|+.|-  ..++.+++    +..++. ..+-+++      ...+.++.+|++.+   +.          ..+|
T Consensus       158 -pnvvgiK~s~~d--~~~~~~~~----~~~~~~-~v~~G~d------~~~~~~l~~G~~G~---is----------~~~n  210 (293)
T PRK04147        158 -PKVIGVKQTAGD--LYQLERIR----KAFPDK-LIYNGFD------EMFASGLLAGADGA---IG----------STYN  210 (293)
T ss_pred             -CCEEEEEeCCCC--HHHHHHHH----HhCCCC-EEEEeeh------HHHHHHHHcCCCEE---Ee----------chhh
Confidence             478999999773  45554443    344542 3455554      33556778898644   33          2456


Q ss_pred             ccHHHHHHHHHh
Q 014369          370 VATEDVVYMLSG  381 (426)
Q Consensus       370 a~lEevv~~L~~  381 (426)
                      .-.|.++.+.+.
T Consensus       211 ~~p~~~~~l~~~  222 (293)
T PRK04147        211 VNGWRARQIFEA  222 (293)
T ss_pred             hCHHHHHHHHHH
Confidence            666776666653

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=87.94  E-value=11  Score=36.82  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             hHHHHH-HcCCCEEEEeccCChHHHhhhcCC----CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-CCCC----
Q 014369          206 GFEAAI-AAGAKEVAIFASASEAFSKSNINC----SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIP----  275 (426)
Q Consensus       206 di~~a~-~~Gv~~V~i~~~~Sd~~~~~~~~~----s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-~r~~----  275 (426)
                      .++.++ +.|+....+..+...   ..+++.    .+++.++.+++.++.|+++|.+... +.   +.+.. ...+    
T Consensus        61 ~l~~~l~~~gl~i~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~-~~---~~~~~~~~~~~~~~  133 (283)
T PRK13209         61 ALVNALVETGFRVNSMCLSAHR---RFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ-LA---GYDVYYEQANNETR  133 (283)
T ss_pred             HHHHHHHHcCCceeEEeccccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-EC---CccccccccHHHHH
Confidence            344444 678887665432211   011111    2567889999999999999998542 21   11110 1111    


Q ss_pred             ---HHHHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHH
Q 014369          276 ---PSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       276 ---~~~l~~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l  315 (426)
                         .+.+.++++.+.+.|+. |.+-  +..-..++.++.++++.+
T Consensus       134 ~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~~~~~~~~~~ll~~v  177 (283)
T PRK13209        134 RRFIDGLKESVELASRASVT-LAFEIMDTPFMNSISKALGYAHYL  177 (283)
T ss_pred             HHHHHHHHHHHHHHHHhCCE-EEEeecCCcccCCHHHHHHHHHHh
Confidence               23456667777778873 4442  233344677777776665

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=87.94  E-value=12  Score=36.79  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=52.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.+.-.+.+-+++.++..            ..+...+.++.|++.|.....     +..|.-...+.+.+.++.+.+
T Consensus        59 ~~~~~~~~~~~~~vi~gv~~~------------~~~~~~~~a~~a~~~G~d~v~-----~~~P~~~~~~~~~l~~~~~~i  121 (284)
T cd00950          59 IEAVVEAVNGRVPVIAGTGSN------------NTAEAIELTKRAEKAGADAAL-----VVTPYYNKPSQEGLYAHFKAI  121 (284)
T ss_pred             HHHHHHHhCCCCcEEeccCCc------------cHHHHHHHHHHHHHcCCCEEE-----EcccccCCCCHHHHHHHHHHH
Confidence            444555433455566555441            234445667788888887432     224544455677777777776


Q ss_pred             HhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 014369          287 HDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  327 (426)
Q Consensus       287 ~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H  327 (426)
                      .+. +..  .-.++...|...+.+   +++.|.+ .|.+ +++.
T Consensus       122 a~~~~~pi~lYn~P~~~g~~ls~~---~~~~L~~-~p~v-~giK  160 (284)
T cd00950         122 AEATDLPVILYNVPGRTGVNIEPE---TVLRLAE-HPNI-VGIK  160 (284)
T ss_pred             HhcCCCCEEEEEChhHhCCCCCHH---HHHHHhc-CCCE-EEEE
Confidence            664 433  223455566544422   3333333 3653 5554

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX

Probab=87.89  E-value=35  Score=35.45  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=94.7

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAF  228 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~  228 (426)
                      .++++.|.+.|++.+.+-.            ..|.....+. ++...+..+. .....++.+++.++..+.+.       
T Consensus        67 ~~ia~~l~~~G~~g~~vas------------~~Ea~~lr~aGi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~-------  127 (382)
T cd06811          67 PFLARALLEAGIPGAVAVD------------FKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAMRPEVITVY-------  127 (382)
T ss_pred             HHHHHHHHHcCCCeEeEec------------HHHHHHHHHcCCCHHhEEEccCCCHHHHHHHHHcCCCEEEEC-------
Confidence            5799999999998777753            2344333332 2222333222 24678888888875544443       


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-----CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 014369          229 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-----EGAIPPSKVAYVAKELHDM-GCFEISLGDTIGV  302 (426)
Q Consensus       229 ~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-----~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~  302 (426)
                                 .++.+..+.+.|+++|..+.+.|..--|...     .+-.+++.+.++++.+.++ +.....| =+.+.
T Consensus       128 -----------s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~  195 (382)
T cd06811         128 -----------SLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGL-TSFPC  195 (382)
T ss_pred             -----------CHHHHHHHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeE-cccch
Confidence                       1445556666777788776655553211110     0024677788888777664 4444444 22222


Q ss_pred             C---------CHHHHHHHHHHHHHhcC---CceEEEEeCCCcCcHHHHHH-HHHHcCCCEEeecccCCCCCCC
Q 014369          303 G---------TPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNIL-ISLQMGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       303 ~---------~P~~v~~li~~l~~~~p---~~~i~~H~HNd~GlA~ANaL-aAl~aGa~~VD~Sv~GlGecP~  362 (426)
                      .         .|.+..+.+..+++.+.   .....+|+.   |...+.++ ...+.|.+.+...+.=+|--|+
T Consensus       196 ~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~G---ga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~  265 (382)
T cd06811         196 FLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAP---SATSCATLPLLAEYGVTHGEPGHALTGTTPL  265 (382)
T ss_pred             hhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccC---CCcchhhHHHHHhCCCcEEeccEEEecCcch
Confidence            1         13322222233333332   111223433   33334444 5567899998877777776454

This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.

>PRK09057 coproporphyrinogen III oxidase; Provisional

Probab=87.88  E-value=24  Score=36.56  Aligned_cols=96  Identities=17%  Similarity=0.060  Sum_probs=61.7

Q ss_pred             CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      +.+++=+ |   +.+.++...++|+.+|.+.+..-+-..-..+|+.  ...+.+.++++.+++.+..|.+.++  +|.|.
T Consensus        91 ~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~--~~~~~~~~ai~~~~~~~~~v~~dli--~GlPg  166 (380)
T PRK09057         91 IEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRL--HSVAEALAAIDLAREIFPRVSFDLI--YARPG  166 (380)
T ss_pred             ccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHhCccEEEEee--cCCCC
Confidence            4555544 3   2467888889999999998743333333344442  1233444666777888877877776  67775


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .   +.+.+.+-++.+.+.+++.|.+-
T Consensus       167 q---t~~~~~~~l~~~~~l~p~~is~y  190 (380)
T PRK09057        167 Q---TLAAWRAELKEALSLAADHLSLY  190 (380)
T ss_pred             C---CHHHHHHHHHHHHhcCCCeEEee
Confidence            4   45566666777778899877765

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=87.83  E-value=17  Score=36.18  Aligned_cols=138  Identities=17%  Similarity=0.237  Sum_probs=79.6

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEee
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV  265 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~  265 (426)
                      +-++.+++ .+.-..+.+.++|++.|.+..+    .....+      ..|.++.+..++.+.+.+   ... |.+.    
T Consensus        14 g~~i~~~tayD~~sArl~e~aG~d~i~vGds----~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD----   82 (264)
T PRK00311         14 GEKIVMLTAYDYPFAKLFDEAGVDVILVGDS----LGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVAD----   82 (264)
T ss_pred             CCCEEEEeCCCHHHHHHHHHcCCCEEEECHH----HHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEe----
Confidence            34555554 3455556777899999865323    222223      347788887776655443   222 3222    


Q ss_pred             ecCCCCC-CCCHHHHHHH-HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCc-eEEE--EeCCCcC------
Q 014369          266 VGCPVEG-AIPPSKVAYV-AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVE-KLAV--HLHDTYG------  333 (426)
Q Consensus       266 fg~pd~~-r~~~~~l~~~-~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~-~i~~--H~HNd~G------  333 (426)
                        .|+.+ ..+++...+. .+.+.++|++.|.|-|.      .++.+.|+++.+. +|.. +|++  ..++.+|      
T Consensus        83 --~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~g  154 (264)
T PRK00311         83 --MPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQG  154 (264)
T ss_pred             --CCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeec
Confidence              23333 3577775554 44455599999999996      3666777777754 3421 2222  3333333      


Q ss_pred             -------cHHHHHHHHHHcCCCEE
Q 014369          334 -------QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 -------lA~ANaLaAl~aGa~~V  350 (426)
                             -++.-+.+-.+|||+.|
T Consensus       155 rt~~~a~~~i~ra~a~~eAGA~~i  178 (264)
T PRK00311        155 RDEEAAEKLLEDAKALEEAGAFAL  178 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEE
Confidence                   23555666679999865

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=87.80  E-value=20  Score=35.71  Aligned_cols=72  Identities=11%  Similarity=-0.093  Sum_probs=35.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCCC-CHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~~-~P~~v~~li~~l~~~~p~  321 (426)
                      ..+.++.|++.|....   +  +-.|.-.+.+.+.+.+..+.+.++ +...+.+- ..|.- .|+.    +..|.+++|.
T Consensus        88 ai~~a~~a~~~Gadav---~--~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn-~~g~~l~~~~----~~~La~~~~n  157 (296)
T TIGR03249        88 AIEIARLAEKAGADGY---L--LLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ-RDNAVLNADT----LERLADRCPN  157 (296)
T ss_pred             HHHHHHHHHHhCCCEE---E--ECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHH----HHHHHhhCCC
Confidence            3455667777777643   1  123444445566666666665553 34444343 44543 3333    3344444554


Q ss_pred             ceEEE
Q 014369          322 EKLAV  326 (426)
Q Consensus       322 ~~i~~  326 (426)
                      + +++
T Consensus       158 v-vgi  161 (296)
T TIGR03249       158 L-VGF  161 (296)
T ss_pred             E-EEE
Confidence            3 444

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein

Probab=87.77  E-value=31  Score=35.06  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccc-cC--HHHHHHHhHhcCC---CcE----EEEeCCh---hhHHH
Q 014369          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEG---ARL----PVLTPNL---KGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~~~v~~~i~~~~~---~~l----~~l~~~~---~di~~  209 (426)
                      .++.++-.+++..+.+ .||..|=++- ..    |-+ .|  .+++++.++.++.   .++    .++.|++   +-++.
T Consensus       124 ~~~~~~~~~~i~~i~~~~~i~~VvltG-GE----PL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~  198 (321)
T TIGR03821       124 QPNKAQWKEALEYIAQHPEINEVILSG-GD----PLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDL  198 (321)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEEeC-cc----cccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHH
Confidence            3566676777777764 4887766643 12    211 23  3455555554443   222    2344442   33455


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      ..+.|...+.+ ++.+-.          .|.-+.+.++++.+++.|+.+.......-    .-..+++.+.++++.+.++
T Consensus       199 L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~Gi~v~~qtvllk----giNDn~~~l~~L~~~l~~~  263 (321)
T TIGR03821       199 LANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAGITLLNQSVLLR----GVNDNADTLAALSERLFDA  263 (321)
T ss_pred             HHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcCCEEEecceeeC----CCCCCHHHHHHHHHHHHHc
Confidence            55677765532 222211          12234466788999999998753222110    1123688999999999999


Q ss_pred             CCCEEEE--cCCCCC-----CCHHHHHHHHHHHHHhcCC
Q 014369          290 GCFEISL--GDTIGV-----GTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       290 Gad~I~l--~DT~G~-----~~P~~v~~li~~l~~~~p~  321 (426)
                      |+...++  .|-+|.     ..+++..++++.+++..++
T Consensus       264 gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG  302 (321)
T TIGR03821       264 GVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG  302 (321)
T ss_pred             CCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence            9875544  555553     4678899999999998864

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=87.76  E-value=4.1  Score=40.32  Aligned_cols=83  Identities=11%  Similarity=0.053  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++-|.+.-|+|=   ++.++-.++++.+.+... ..+|-+|. +++.--++..+..|.++|
T Consensus        14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   93 (285)
T TIGR00674        14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG   93 (285)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999884   566777777777777654 34566665 567778889999999999


Q ss_pred             CCEEeecc
Q 014369          347 ISTVDCSV  354 (426)
Q Consensus       347 a~~VD~Sv  354 (426)
                      |+.|=..-
T Consensus        94 ad~v~v~p  101 (285)
T TIGR00674        94 ADGFLVVT  101 (285)
T ss_pred             CCEEEEcC
Confidence            99886654

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase

Probab=87.76  E-value=27  Score=34.22  Aligned_cols=82  Identities=11%  Similarity=-0.047  Sum_probs=51.0

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----ChhhHHH
Q 014369          134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEA  209 (426)
Q Consensus       134 LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~  209 (426)
                      |++|.+..|..+.... -.+++.+..+|+|.+-+-.=..+      -|.+++...++......+..++|    ....+++
T Consensus         7 l~~g~~~~G~~~~~~s-p~~~e~~a~~G~D~v~iD~EHg~------~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r   79 (249)
T TIGR03239         7 LLARETLIGCWSALGN-PITTEVLGLAGFDWLLLDGEHAP------NDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKR   79 (249)
T ss_pred             HHcCCceEEEEEcCCC-cHHHHHHHhcCCCEEEEecccCC------CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence            5566665554322222 46788889999998877532221      24556666666544444444553    3567899


Q ss_pred             HHHcCCCEEEEec
Q 014369          210 AIAAGAKEVAIFA  222 (426)
Q Consensus       210 a~~~Gv~~V~i~~  222 (426)
                      +++.|++.|.+..
T Consensus        80 ~LD~Ga~gIivP~   92 (249)
T TIGR03239        80 LLDIGFYNFLIPF   92 (249)
T ss_pred             HhcCCCCEEEecC
Confidence            9999999887753

In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=87.73  E-value=12  Score=37.13  Aligned_cols=103  Identities=11%  Similarity=0.022  Sum_probs=55.6

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.+.-...+.+++.++.            ...+...+.++.|++.|.....     ...|.-.+.+++.+.+..+.+
T Consensus        57 ~~~~~~~~~~~~~vi~gv~~------------~s~~~~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~i~~~~~~i  119 (285)
T TIGR00674        57 IEFVVDLVNGRVPVIAGTGS------------NATEEAISLTKFAEDVGADGFL-----VVTPYYNKPTQEGLYQHFKAI  119 (285)
T ss_pred             HHHHHHHhCCCCeEEEeCCC------------ccHHHHHHHHHHHHHcCCCEEE-----EcCCcCCCCCHHHHHHHHHHH
Confidence            44555443345556655544            1244455677788888987432     224555556677777777766


Q ss_pred             HhC-CCC--EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCC
Q 014369          287 HDM-GCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDT  331 (426)
Q Consensus       287 ~~~-Gad--~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd  331 (426)
                      .+. +..  .-+++...|...+.+   +++.|.+ .|.+ +++ ..+.|
T Consensus       120 ~~~~~~pi~lYn~P~~tg~~l~~~---~l~~L~~-~~~v-~giK~s~~d  163 (285)
T TIGR00674       120 AEEVDLPIILYNVPSRTGVSLYPE---TVKRLAE-EPNI-VAIKEATGN  163 (285)
T ss_pred             HhcCCCCEEEEECcHHhcCCCCHH---HHHHHHc-CCCE-EEEEeCCCC
Confidence            553 333  334555667555433   3334433 4542 565 44444

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=87.70  E-value=12  Score=39.80  Aligned_cols=144  Identities=16%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC-C------CCcccc---ccCHHHHHHHhHhcCCCc-EEEEe--CC---hhhH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-S------PKWVPQ---LADARDVMEAVRDLEGAR-LPVLT--PN---LKGF  207 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s------~~~~p~---~~D~~~v~~~i~~~~~~~-l~~l~--~~---~~di  207 (426)
                      ..+.+..++=++.|.+.|++.|-+.... .      +...|.   ..+..++++.+..+++.. +....  |.   .+-+
T Consensus       176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli  255 (448)
T PRK14333        176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLI  255 (448)
T ss_pred             ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHH
Confidence            3567777777788888899988664210 0      001111   124566666666555532 22212  32   2234


Q ss_pred             HHHHHc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          208 EAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       208 ~~a~~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      +...+.  +...+++.+ +.|+--++ .+|+..  ..+.+.++++.+++.  |+.+.++++  +|.|..   +.+.+.+.
T Consensus       256 ~~~~~~~~~~~~l~igiQSgsd~vLk-~m~R~~--t~e~~~~~i~~lr~~~p~i~i~~d~I--vGfPgE---T~edf~~t  327 (448)
T PRK14333        256 KACAELPKVCEHFHIPFQSGDNEILK-AMARGY--THEKYRRIIDKIREYMPDASISADAI--VGFPGE---TEAQFENT  327 (448)
T ss_pred             HHHhcCCcccccccCCCccCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCcEEEeeEE--EECCCC---CHHHHHHH
Confidence            444454  467777765 44443333 344422  344556777788888  566666665  677765   46777777


Q ss_pred             HHHHHhCCCCEEE
Q 014369          283 AKELHDMGCFEIS  295 (426)
Q Consensus       283 ~~~l~~~Gad~I~  295 (426)
                      ++.+.+.+.+.+.
T Consensus       328 l~~l~~~~~~~~~  340 (448)
T PRK14333        328 LKLVEEIGFDQLN  340 (448)
T ss_pred             HHHHHHcCCCEEe
Confidence            7777788876554

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=87.63  E-value=15  Score=37.85  Aligned_cols=129  Identities=17%  Similarity=0.103  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEE-eCChhhHHHHHHcCCCEE
Q 014369          146 PTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVL-TPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l-~~~~~di~~a~~~Gv~~V  218 (426)
                      ..++ .+-++.|.++  |++.|-+-.-.        ...+.+++.+++    .|+..+.+- +-+.++.+.++++|+|.|
T Consensus       105 ~~~d-~er~~~L~~a~~~~d~iviD~Ah--------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~i  175 (343)
T TIGR01305       105 SDND-LEKMTSILEAVPQLKFICLDVAN--------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIV  175 (343)
T ss_pred             CHHH-HHHHHHHHhcCCCCCEEEEECCC--------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEE
Confidence            3444 5666777776  59988775311        122344444443    344443333 346789999999999999


Q ss_pred             EEeccCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          219 AIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .+.+...-.+..... +... -.+..+.++++.|+..+.+|.+         |.+-...   -+++|++. +||+.+-+.
T Consensus       176 kVgiGpGSicttR~~~Gvg~-pqltAv~~~a~aa~~~~v~VIa---------DGGIr~~---gDI~KALA-~GAd~VMlG  241 (343)
T TIGR01305       176 KVGIGPGSVCTTRTKTGVGY-PQLSAVIECADAAHGLKGHIIS---------DGGCTCP---GDVAKAFG-AGADFVMLG  241 (343)
T ss_pred             EEcccCCCcccCceeCCCCc-CHHHHHHHHHHHhccCCCeEEE---------cCCcCch---hHHHHHHH-cCCCEEEEC
Confidence            988543333322222 2221 2577777888888888876642         4442222   34555554 999999887

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=87.63  E-value=21  Score=38.16  Aligned_cols=144  Identities=14%  Similarity=0.099  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEec-----C-CCCCc--cccccCHHHHHHHhHhc-CCCcEE--EEeCC---hhhHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATS-----F-VSPKW--VPQLADARDVMEAVRDL-EGARLP--VLTPN---LKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~-----~-~s~~~--~p~~~D~~~v~~~i~~~-~~~~l~--~l~~~---~~di~~  209 (426)
                      ..+.+..++-++.|.+.|++.|-+..     + .....  .+...+..++++.+... ++.++.  +..|.   .+-++.
T Consensus       196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~  275 (467)
T PRK14329        196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEV  275 (467)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHH
Confidence            56888888888899989998776531     1 11000  00112345556555432 333433  33332   334566


Q ss_pred             HHHc--CCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          210 AIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       210 a~~~--Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      ..+.  |...|++.+ +.|+..++ .+|+...  .+.+.++++.+++.  ++.+.++++  +|.|..+   .+.+.+.++
T Consensus       276 m~~~~~g~~~i~iglQSgsd~vLk-~m~R~~t--~~~~~~~i~~ir~~~~~~~i~~d~I--vGfPgET---~edf~~tl~  347 (467)
T PRK14329        276 MAKYDNICKHIHLPVQSGSDRILK-LMNRKYT--REWYLDRIDAIRRIIPDCGISTDMI--AGFPTET---EEDHQDTLS  347 (467)
T ss_pred             HHhCCCCCCeEEeCCCcCCHHHHH-hcCCCCC--HHHHHHHHHHHHHhCCCCEEEEeEE--EeCCCCC---HHHHHHHHH
Confidence            6565  788999987 45554433 3444211  23445666677776  455666655  6778654   567777777


Q ss_pred             HHHhCCCCEEE
Q 014369          285 ELHDMGCFEIS  295 (426)
Q Consensus       285 ~l~~~Gad~I~  295 (426)
                      .+.+.+.+.+.
T Consensus       348 ~i~~l~~~~~~  358 (467)
T PRK14329        348 LMEEVGYDFAF  358 (467)
T ss_pred             HHHhhCCCeEe
Confidence            77778776544

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=87.56  E-value=26  Score=38.72  Aligned_cols=163  Identities=20%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CC--CcEEEEe-CChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EG--ARLPVLT-PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~--~~l~~l~-~~~~di~~a~~~Gv~~V  218 (426)
                      ..+++.-++-+..|.++|.+.|-++.+.       +.+++.+....+++  .+  +.+.+=. -+.+-...|++. ++.|
T Consensus        37 T~D~~atv~Qi~~l~~aGceiVRvtv~~-------~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~ki  108 (611)
T PRK02048         37 TMDTEACVAQAKRIIDAGGEYVRLTTQG-------VREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AEKV  108 (611)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hCCE
Confidence            3456666888899999999999998643       33444433333332  22  3333311 233323445566 8888


Q ss_pred             EEeccCChH-----HH-----hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---CC--CCHHHH----
Q 014369          219 AIFASASEA-----FS-----KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GA--IPPSKV----  279 (426)
Q Consensus       219 ~i~~~~Sd~-----~~-----~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---~r--~~~~~l----  279 (426)
                      ||--. +=.     |.     ...|....+..-+++..+|+.||++|..++.-+-  .|+-..   .+  .+|+-+    
T Consensus       109 RINPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--~GSL~~~i~~~yg~tpe~mVeSA  185 (611)
T PRK02048        109 RINPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--HGSLSDRIMSRYGDTPEGMVESC  185 (611)
T ss_pred             EECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHH
Confidence            88421 100     00     0112222344557788899999999999984332  222110   01  134333    


Q ss_pred             HHHHHHHHhCCCC--EEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369          280 AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       280 ~~~~~~l~~~Gad--~I~l~DT~G~~~P~~v~~li~~l~~  317 (426)
                      .+.++.+.+.|-+  .|+++-+.-.-.-...+.++..+.+
T Consensus       186 le~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~  225 (611)
T PRK02048        186 MEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA  225 (611)
T ss_pred             HHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence            3466777788866  6667777653333444455555543

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=87.42  E-value=9.8  Score=38.19  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCC-CCHHHHHHHHHHHHHhc
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~-~~P~~v~~li~~l~~~~  319 (426)
                      .+.++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+... ..+ .....+..+++.+.+..
T Consensus         5 ~~~~lL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~   74 (285)
T PRK07709          5 SMKEMLNKALEGKYAVGQ-----FNM-----NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEM   74 (285)
T ss_pred             cHHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHc
Confidence            356788899999987653     321     4678999999999999877 4455442 233 23456777888877766


Q ss_pred             C-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 014369          320 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG  356 (426)
Q Consensus       320 p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~G  356 (426)
                      . .+|+.+  |=|.|.-......|+++|.+  .+|+|-..
T Consensus        75 ~~~VPV~l--HLDHg~~~e~i~~ai~~GftSVM~DgS~lp  112 (285)
T PRK07709         75 NITVPVAI--HLDHGSSFEKCKEAIDAGFTSVMIDASHHP  112 (285)
T ss_pred             CCCCcEEE--ECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4 235665  55788889999999999998  66988653

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=87.28  E-value=16  Score=35.59  Aligned_cols=177  Identities=15%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             HHHhhcCC-CCccEEEeCCccccCCCC-CC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh
Q 014369          116 TNKFLKGI-PRFVKIVEVGPRDGLQNE-KN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD  191 (426)
Q Consensus       116 ~~~~~~~~-p~~V~I~D~TLRDG~Q~~-~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~  191 (426)
                      -.++...+ |..|.++-.=++=..... ..  .|..+........|.++.++.|=.|.-+.. ++   ...+++.+.++.
T Consensus        22 E~e~~~~~~p~~v~~h~sRi~~~~~vt~e~L~~m~~~l~~aa~~ll~~a~~dvi~~~cTsgs-~~---~G~~~~~~~i~~   97 (239)
T TIGR02990        22 ERDFARMVASDRIGVYVNRIPYANPTTPENLRKMQPRLTEAAALILPDEELDVVAYSCTSAS-VV---IGDDEVTRAINA   97 (239)
T ss_pred             HHHHHHHhCcCCeEEEEeceeCCCCCCHHHHHHHhhhHHHHHHHhcCCCCCCEEEEccchhh-ee---cCHHHHHHHHHh
Confidence            35554445 676777766443221110 00  122222222233335578998887632211 11   123455555553


Q ss_pred             -cCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          192 -LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       192 -~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                       .++  +.+.++...-++...+.|+++|.+..|=.+             .++  ..+.++..+.|++|.....  |+..+
T Consensus        98 ~~~g--~p~tt~~~A~~~AL~alg~~RIalvTPY~~-------------~v~--~~~~~~l~~~G~eV~~~~~--~~~~~  158 (239)
T TIGR02990        98 AKPG--TPVVTPSSAAVDGLAALGVRRISLLTPYTP-------------ETS--RPMAQYFAVRGFEIVNFTC--LGLTD  158 (239)
T ss_pred             cCCC--CCeeCHHHHHHHHHHHcCCCEEEEECCCcH-------------HHH--HHHHHHHHhCCcEEeeeec--cCCCC
Confidence             222  334444444455566679999999977333             122  3556677889999875433  55543


Q ss_pred             C---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC
Q 014369          271 E---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       271 ~---~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .   .+.+|+.+.+.++.+...++|.|.+..|.     ....++++.+-+.++
T Consensus       159 ~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn-----Lrt~~vi~~lE~~lG  206 (239)
T TIGR02990       159 DREMARISPDCIVEAALAAFDPDADALFLSCTA-----LRAATCAQRIEQAIG  206 (239)
T ss_pred             CceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC-----chhHHHHHHHHHHHC
Confidence            2   47899999999999988899999999763     345667777766654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=87.24  E-value=2.8  Score=36.09  Aligned_cols=77  Identities=13%  Similarity=0.043  Sum_probs=43.3

Q ss_pred             HHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 014369          248 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  327 (426)
Q Consensus       248 v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H  327 (426)
                      ++.+++.|++..+++-     |+.-..+.....++.+.+.++|...++++=+.+-.+++++..+.+.+.+ .|. |+-+|
T Consensus        20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h   92 (110)
T PF04273_consen   20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH   92 (110)
T ss_dssp             HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred             HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence            3456779999875442     4432222224445667788999999999999999999999998877655 565 67777


Q ss_pred             eCCC
Q 014369          328 LHDT  331 (426)
Q Consensus       328 ~HNd  331 (426)
                      |...
T Consensus        93 C~sG   96 (110)
T PF04273_consen   93 CRSG   96 (110)
T ss_dssp             -SCS
T ss_pred             CCCC
Confidence            7643

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated

Probab=87.23  E-value=15  Score=37.42  Aligned_cols=146  Identities=16%  Similarity=0.223  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecC----CCCCccccc--cCHHHHHHHhHhc-CCCcEEEEeCC-hhhHHHHHHcCCCE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPN-LKGFEAAIAAGAKE  217 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~----~s~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~~-~~di~~a~~~Gv~~  217 (426)
                      -++.-+++++++.++|++.|-+.=+    .+|+....+  --.+++++.++.. ++..+.-+|.+ ..-++...+.|++.
T Consensus       184 ~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~~~  263 (346)
T PRK00115        184 LADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGADV  263 (346)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCCCE
Confidence            4444566778888899999976522    122111000  0012222333221 13444445543 34567777889887


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC---
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF---  292 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad---  292 (426)
                      +.+--.++           ..          +..+..|  ..+.++|.     |.--..+++.+.+.++.+.+.+.+   
T Consensus       264 is~d~~~d-----------l~----------~~k~~~g~~~~i~Gni~-----p~ll~gt~e~i~~~~~~~i~~~~~~gf  317 (346)
T PRK00115        264 VGLDWTVD-----------LA----------EARRRVGDKKALQGNLD-----PAVLLAPPEAIEEEVRAILDGGGGPGH  317 (346)
T ss_pred             EeeCCCCC-----------HH----------HHHHHcCCCeEEEeCCC-----hhHhcCCHHHHHHHHHHHHHHhCCCCe
Confidence            77643321           11          1112234  23333332     111123567777777666654322   


Q ss_pred             EEEEc-CCCCCCCHHHHHHHHHHHHH
Q 014369          293 EISLG-DTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       293 ~I~l~-DT~G~~~P~~v~~li~~l~~  317 (426)
                      ++... +..--..|+.+..+++++++
T Consensus       318 Il~~Gc~i~~~tp~eNi~a~v~a~~~  343 (346)
T PRK00115        318 IFNLGHGILPETPPENVKALVEAVHE  343 (346)
T ss_pred             eeecCCcCCCCcCHHHHHHHHHHHHH
Confidence            34332 22223344667777777664

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=87.23  E-value=7.8  Score=41.63  Aligned_cols=210  Identities=15%  Similarity=0.154  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEE-EeCChhhHHHHHHcCCCEEEEec
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      ++..+.++.|.+.|++.|-+-.-. .       ..+.+++.+++    .|++.+.+ .+-+.++.+.+.++|++.|.+..
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~D~a~-g-------~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~  295 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVIDTAH-G-------HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGV  295 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEEeCCC-C-------CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECC
Confidence            455789999999999987764211 1       11333444443    34444333 23467889999999999999776


Q ss_pred             cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369          223 SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG  301 (426)
Q Consensus       223 ~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G  301 (426)
                      ..--.+.... .++... .+..+.++++.+++.|+.|.+         +.+-..+.+   ++|++ .+||+.+.+.-..-
T Consensus       296 g~Gs~~ttr~~~~~g~~-~~~a~~~~~~~~~~~~~~via---------dGgi~~~~d---i~kal-a~GA~~vm~g~~~a  361 (475)
T TIGR01303       296 GPGAMCTTRMMTGVGRP-QFSAVLECAAEARKLGGHVWA---------DGGVRHPRD---VALAL-AAGASNVMVGSWFA  361 (475)
T ss_pred             cCCccccCccccCCCCc-hHHHHHHHHHHHHHcCCcEEE---------eCCCCCHHH---HHHHH-HcCCCEEeechhhc
Confidence            4333222222 122222 234455777788888877642         344344544   44443 49999887764432


Q ss_pred             CCCHHHHHHHHHHHHHhcCCceE----EEEeCCCcCcHHHHHHHHHHcCCCEEe------------ecccCCCCCCCCCC
Q 014369          302 VGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQMGISTVD------------CSVAGLGGCPYAKG  365 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p~~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD------------~Sv~GlGecP~a~g  365 (426)
                                  - -.+.|...+    +-..-.-+|||.--++..--++-+++.            +++-++=.      
T Consensus       362 ------------g-~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~------  422 (475)
T TIGR01303       362 ------------G-TYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDP------  422 (475)
T ss_pred             ------------c-cccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccC------
Confidence                        1 133464323    224555789997655542112223332            22211111      


Q ss_pred             CCCcccHHHHHHHHH----h-CCCCCCcChhhHHHHHHHH
Q 014369          366 ASGNVATEDVVYMLS----G-LGVETNVDLRKLMLAGDFI  400 (426)
Q Consensus       366 raGNa~lEevv~~L~----~-lG~~~~iDl~~L~~la~~v  400 (426)
                      -.|  ++.+++..|.    . +|+--.-+++.|.+-++++
T Consensus       423 ~~g--~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~~~~  460 (475)
T TIGR01303       423 DRG--GVEDLIDHIISGVRSSCTYAGASSLEEFHERAVVG  460 (475)
T ss_pred             CCC--CHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCCEEE
Confidence            122  4566666654    2 5665556777777655544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK02227 hypothetical protein; Provisional

Probab=87.22  E-value=4.4  Score=39.64  Aligned_cols=148  Identities=20%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHH----hHh-cCCCcEEEEeC---------C-hhhHHH
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA----VRD-LEGARLPVLTP---------N-LKGFEA  209 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~----i~~-~~~~~l~~l~~---------~-~~di~~  209 (426)
                      +...+...-+.....+|+++|-+|.+.....    ....++++.    ++. .++.++.+...         . ..-.+.
T Consensus        64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~----~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~  139 (238)
T PRK02227         64 YKPGTISLAALGAAATGADYVKVGLYGGKTA----EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAI  139 (238)
T ss_pred             CCchHHHHHHHHHHhhCCCEEEEcCCCCCcH----HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHH
Confidence            3446667777788899999999998743210    111122222    221 12344333221         1 233567


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHH--HHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIED--SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e--~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.++|.+.+.+=     ...|.  |.+.-+  ..+++.+.++.+|++|+.+-          .++-...+++-    .|.
T Consensus       140 a~~aGf~g~MlD-----Ta~Kd--g~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g----------LAGSL~~~dip----~L~  198 (238)
T PRK02227        140 AADAGFDGAMLD-----TAIKD--GKSLFDHMDEEELAEFVAEARSHGLMSA----------LAGSLKFEDIP----ALK  198 (238)
T ss_pred             HHHcCCCEEEEe-----cccCC--CcchHhhCCHHHHHHHHHHHHHcccHhH----------hcccCchhhHH----HHH
Confidence            888999987773     22222  333322  35667899999999998754          23333344433    455


Q ss_pred             hCCCCEEEE------c-CCCCCCCHHHHHHHHHHHHH
Q 014369          288 DMGCFEISL------G-DTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       288 ~~Gad~I~l------~-DT~G~~~P~~v~~li~~l~~  317 (426)
                      .+++|.+.+      . |-.|.+.|+.|.++.+.+..
T Consensus       199 ~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~~  235 (238)
T PRK02227        199 RLGPDILGVRGAVCGGGDRTGRIDPELVAELREALRA  235 (238)
T ss_pred             hcCCCEEEechhccCCCCcccccCHHHHHHHHHHhhc
Confidence            677775543      3 47899999999998887764

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=87.19  E-value=9.5  Score=38.84  Aligned_cols=71  Identities=14%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      ..+.++.+.++|++.|.+.=+.|  .+..+.++++.+++..|..+|.+  +|-  .....+..++++|||.|-+.+.
T Consensus        95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g  165 (325)
T cd00381          95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG  165 (325)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence            45667888899999877633333  45788899999999988555555  222  4456778889999999987553

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=87.15  E-value=8.6  Score=38.63  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCC-CCHHHHHHHHHHHHHhc
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGV-GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~-~~P~~v~~li~~l~~~~  319 (426)
                      .++++++.|++.|+-|-+     |.+     .+.+.+..+++++.+.++..| .+... ..+ .-+..+..++..+.+..
T Consensus         5 ~~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~   74 (288)
T TIGR00167         5 DVKELLQDAKEEGYAIPA-----FNI-----NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAY   74 (288)
T ss_pred             cHHHHHHHHHHCCceEEE-----EEE-----CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhc
Confidence            466888899999987753     322     357899999999999998744 44332 222 33667788888777766


Q ss_pred             C-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369          320 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  359 (426)
Q Consensus       320 p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  359 (426)
                      + .+|+.+  |=|.|.-...+..|+++|.+  .+|+|-..+-+
T Consensus        75 ~~~VPV~l--HLDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee  115 (288)
T TIGR00167        75 PYGVPVAL--HLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE  115 (288)
T ss_pred             cCCCcEEE--ECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH
Confidence            2 235665  55778888999999999998  66988765543

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=86.93  E-value=4.7  Score=39.44  Aligned_cols=107  Identities=15%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.+.|.+.|-|....-+        .+    .+.-.++|+.+++.|++|-.-+-.-+..++ ...+++...+.+++.
T Consensus        77 l~~~k~lGf~~IEiS~G~~~--------i~----~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~-~~~~~~~~i~~~~~~  143 (237)
T TIGR03849        77 LNECDELGFEAVEISDGSME--------IS----LEERCNLIERAKDNGFMVLSEVGKKSPEKD-SELTPDDRIKLINKD  143 (237)
T ss_pred             HHHHHHcCCCEEEEcCCccC--------CC----HHHHHHHHHHHHhCCCeEeccccccCCccc-ccCCHHHHHHHHHHH
Confidence            56788899999999755322        12    233457889999999988754443332112 246888889999999


Q ss_pred             HhCCCCEEEE-----------cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369          287 HDMGCFEISL-----------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  330 (426)
Q Consensus       287 ~~~Gad~I~l-----------~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN  330 (426)
                      .++||+.|.+           .|..|......+.++    .+++|..+|-|-+=+
T Consensus       144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i----~~~l~~eklifEAp~  194 (237)
T TIGR03849       144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVL----AENVDINKVIFEAPQ  194 (237)
T ss_pred             HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHH----HhhCChhcEEEECCC
Confidence            9999986654           344444444444444    444654456665543

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=86.92  E-value=44  Score=40.07  Aligned_cols=220  Identities=15%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-------CCCcEEEEeCChhh-----------HHHHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-------EGARLPVLTPNLKG-----------FEAAIA  212 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-------~~~~l~~l~~~~~d-----------i~~a~~  212 (426)
                      .+.++.|.+.|+|.|=+-.      +|.+.+.+..+..++..       ..+.+++++....+           +.....
T Consensus       151 ~eq~~~L~~~GvD~iliET------i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~  224 (1178)
T TIGR02082       151 TEQAKGLLDGGVDLLLIET------CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEH  224 (1178)
T ss_pred             HHHHHHHHhCCCCEEEEec------cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhc


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--------CCHHHHHHHHH
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--------IPPSKVAYVAK  284 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--------~~~~~l~~~~~  284 (426)
                      .+++.|.+-++..+            +.+..+.+.+......-+-+.         |+++.        .+|+++.+.++
T Consensus       225 ~~~~avGlNCs~gP------------~~m~~~l~~l~~~~~~pi~vy---------PNAGlP~~~~~yd~~p~~~a~~~~  283 (1178)
T TIGR02082       225 AGIDMIGLNCALGP------------DEMRPHLKHLSEHAEAYVSCH---------PNAGLPNAFGEYDLTPDELAKALA  283 (1178)
T ss_pred             CCCCEEEeCCCCCH------------HHHHHHHHHHHHhcCceEEEE---------eCCCCCCCCCcccCCHHHHHHHHH


Q ss_pred             HHHhC-CCCEEE-EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeC---------------------------------
Q 014369          285 ELHDM-GCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---------------------------------  329 (426)
Q Consensus       285 ~l~~~-Gad~I~-l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~H---------------------------------  329 (426)
                      .+.+. |+..|. .|-|    +|+.++.+-+.++..-|......+.+                                 
T Consensus       284 ~~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~  359 (1178)
T TIGR02082       284 DFAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFR  359 (1178)
T ss_pred             HHHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHH


Q ss_pred             -----CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----CCCCCcChhhHHHHHHHH
Q 014369          330 -----DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFI  400 (426)
Q Consensus       330 -----Nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----G~~~~iDl~~L~~la~~v  400 (426)
                           .|+.-++.-+..-+++||++||+.+ |...      ..+-..++.++..+...    .+..-||..+-.-+-.-+
T Consensus       360 ~~i~~~d~~~a~~~A~~qve~GA~iIDVn~-~~~~------vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaL  432 (1178)
T TIGR02082       360 RLIIAEDYDEALDIAKQQVENGAQILDINV-DYGM------LDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGL  432 (1178)
T ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHH


Q ss_pred             HHHhCCCC
Q 014369          401 NKHLGRPS  408 (426)
Q Consensus       401 ~~~~g~~~  408 (426)
                      +.+-|.++
T Consensus       433 k~~~G~~I  440 (1178)
T TIGR02082       433 KCIQGKCI  440 (1178)
T ss_pred             HhcCCCCE

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type

Probab=86.89  E-value=20  Score=37.67  Aligned_cols=142  Identities=15%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC----CCCCccccccCHHHHHHHhHhcCC---CcEEEEeCC-----hhhHHHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN-----LKGFEAAI  211 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~----~s~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~~-----~~di~~a~  211 (426)
                      ..+.+..++-++.|.+.|++.|-+...    ...+..   ....++++.+..+++   +++..+.|.     .+++-.+.
T Consensus       161 sr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~---~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~  237 (420)
T TIGR01578       161 SYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG---SRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVY  237 (420)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC---cCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHH
Confidence            458888888889999999988776421    111100   124556666655543   233333332     12332222


Q ss_pred             -HcC-CCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          212 -AAG-AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       212 -~~G-v~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                       ..+ .+.+++.+ +.|+--+ ..+++.  ...+.+.++++.+++.  |+.+..+++  +|.|..   +.+.+.+.++.+
T Consensus       238 ~~~~~~~~l~iglQSgsd~iL-~~m~R~--~~~~~~~~~i~~i~~~~~~i~i~~~~I--vG~PgE---T~ed~~~t~~~~  309 (420)
T TIGR01578       238 QHEKVYKFLHLPVQSGSDSVL-KEMKRE--YTVSDFEDIVDKFRERFPDLTLSTDII--VGFPTE---TDDDFEETMELL  309 (420)
T ss_pred             hcccccCceEeCCccCCHHHH-HhcCCC--CCHHHHHHHHHHHHHhCCCCEEEeeEE--EeCCCC---CHHHHHHHHHHH
Confidence             233 46777776 4454333 344442  2244566777888887  777776666  677866   357777777778


Q ss_pred             HhCCCCEEEE
Q 014369          287 HDMGCFEISL  296 (426)
Q Consensus       287 ~~~Gad~I~l  296 (426)
                      .+.+.+.+.+
T Consensus       310 ~~~~~~~i~~  319 (420)
T TIGR01578       310 RKYRPEKINI  319 (420)
T ss_pred             HHhCCCEEEE
Confidence            8888776663

This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=86.77  E-value=11  Score=38.56  Aligned_cols=75  Identities=13%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHhCCC--CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          275 PPSKVAYVAKELHDMGC--FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Ga--d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +++.+ +-++.+.++|+  |.|.| |+.- ..-..+.++|+.+++.+|+.+|-.=   |-+ -...+..++++||+.|.+
T Consensus        95 ~~~~~-~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g---~V~-t~e~a~~l~~aGad~i~v  167 (326)
T PRK05458         95 KDDEY-DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAG---NVG-TPEAVRELENAGADATKV  167 (326)
T ss_pred             CHHHH-HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEE---ecC-CHHHHHHHHHcCcCEEEE
Confidence            34444 44667888855  98877 4333 5568889999999999986544431   011 345678888999999876


Q ss_pred             cccC
Q 014369          353 SVAG  356 (426)
Q Consensus       353 Sv~G  356 (426)
                      +..|
T Consensus       168 g~~~  171 (326)
T PRK05458        168 GIGP  171 (326)
T ss_pred             CCCC
Confidence            6554

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=86.75  E-value=33  Score=34.44  Aligned_cols=125  Identities=20%  Similarity=0.227  Sum_probs=73.5

Q ss_pred             HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      ..++.|++.|-|-...+...   .-..+.++-++++..+++..++. ++.+.      +   |..  .+    ++++++.
T Consensus        46 ~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT~--~~----~va~~AL  107 (282)
T PRK11613         46 LMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DTS--KP----EVIRESA  107 (282)
T ss_pred             HHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---ECC--CH----HHHHHHH
Confidence            44578999999984322111   11346788899999999888853 54433      1   322  22    4667777


Q ss_pred             hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC-----------------cHHHHHHHHHHcCCC--
Q 014369          288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-----------------QSLPNILISLQMGIS--  348 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G-----------------lA~ANaLaAl~aGa~--  348 (426)
                      ++|++.|  -|..|...| ++.++   +++ +...-+-.|.+.+..                 ......-.|..+|+.  
T Consensus       108 ~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~  180 (282)
T PRK11613        108 KAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKE  180 (282)
T ss_pred             HcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChh
Confidence            8899974  566776555 33333   333 322236667642211                 112445568899997  


Q ss_pred             --EEeecccCCCC
Q 014369          349 --TVDCSVAGLGG  359 (426)
Q Consensus       349 --~VD~Sv~GlGe  359 (426)
                        ++|-.+ |+|.
T Consensus       181 ~IilDPGi-GF~k  192 (282)
T PRK11613        181 KLLLDPGF-GFGK  192 (282)
T ss_pred             hEEEeCCC-CcCC
Confidence              789953 4554

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=86.72  E-value=2.7  Score=41.06  Aligned_cols=74  Identities=24%  Similarity=0.388  Sum_probs=47.2

Q ss_pred             HHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCC-H-HHHHHHHHHHHHHHHhcCCc
Q 014369          183 RDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCS-I-EDSLVRYRAVAHAAKVLSIP  257 (426)
Q Consensus       183 ~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s-~-~e~l~~~~~~v~~Ak~~G~~  257 (426)
                      +.+...++++  .+++++.+. |..+.++.|.+.|++.|-++...   +....-... . ++.++++.+++++|+++|+.
T Consensus       111 ~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG~---yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~  187 (239)
T PF03740_consen  111 DRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTGP---YANAFDDAEEAEEELLERLRDAARYAHELGLG  187 (239)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETHH---HHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehhH---hhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            3444444433  467777766 77889999999999999998641   222211111 1 23379999999999999998


Q ss_pred             EE
Q 014369          258 VR  259 (426)
Q Consensus       258 v~  259 (426)
                      |.
T Consensus       188 Vn  189 (239)
T PF03740_consen  188 VN  189 (239)
T ss_dssp             EE
T ss_pred             Ee
Confidence            87

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=86.70  E-value=5  Score=39.83  Aligned_cols=81  Identities=14%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369          272 GAIPPSKVAYVAKELHDM-GCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM  345 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a  345 (426)
                      +..|.+-+.++++.+.+. |++.|.+.-|+|=   ++.++=.++++.+.+... ..+|-++. +++.--++..+..|.++
T Consensus        16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~   95 (288)
T cd00954          16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL   95 (288)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence            578999999999999999 9999999999884   556777777777777664 35677777 77888889999999999


Q ss_pred             CCCEEee
Q 014369          346 GISTVDC  352 (426)
Q Consensus       346 Ga~~VD~  352 (426)
                      ||+.|=.
T Consensus        96 Gad~v~~  102 (288)
T cd00954          96 GYDAISA  102 (288)
T ss_pred             CCCEEEE
Confidence            9998754

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=86.65  E-value=3.7  Score=42.64  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCC
Q 014369          288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLG  358 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~GlG  358 (426)
                      ..|.+.|+=+=.-+.-+|+++.++|..||+..|..+|++-.=-..+.....+. +..+|+|.|  |+.=+|-|
T Consensus       170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ItIDG~~GGTG  241 (368)
T PF01645_consen  170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFITIDGAEGGTG  241 (368)
T ss_dssp             -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEEEE-TT---S
T ss_pred             CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEEEeCCCCCCC
Confidence            45788888888888999999999999999999888888877655555544333 889999965  44444444

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=86.63  E-value=26  Score=33.99  Aligned_cols=122  Identities=16%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE-EEe----eecCCCCC--CCCH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSC----VVGCPVEG--AIPP  276 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~-~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~-v~~----~fg~pd~~--r~~~  276 (426)
                      +.++.+.++|.+.|-+.+.-  .+.. ....++.    ..+.++.+.+++.|+.+... +..    .++.++..  ....
T Consensus        20 e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~   93 (284)
T PRK13210         20 ERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL   93 (284)
T ss_pred             HHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence            45677778888877776431  1110 0112222    23445566777788876531 110    01111100  0112


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhc-----CCceEEEEeCCCc
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTY  332 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~-----p~~~i~~H~HNd~  332 (426)
                      +.+.++++.+.++|++.|.++....   ...+.....+++.+++..     -++.|.+|.|...
T Consensus        94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~  157 (284)
T PRK13210         94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTP  157 (284)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcc
Confidence            4556677777778888887752111   112233344444433321     1346777777543

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=86.63  E-value=4.8  Score=38.46  Aligned_cols=80  Identities=10%  Similarity=0.036  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---cCC-ceEEEEeCC---C---cCcHHHH-HHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPV-EKLAVHLHD---T---YGQSLPN-ILIS  342 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~---~p~-~~i~~H~HN---d---~GlA~AN-aLaA  342 (426)
                      .+.+.....++.+.++|++.|.+-...|.....++.+.++.+++.   ++. .-++.|.+.   .   ...-+.- +..|
T Consensus        73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a  152 (235)
T cd00958          73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG  152 (235)
T ss_pred             CCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence            445555556778889999999888888877666677677776653   322 123444410   0   0012222 5558


Q ss_pred             HHcCCCEEeec
Q 014369          343 LQMGISTVDCS  353 (426)
Q Consensus       343 l~aGa~~VD~S  353 (426)
                      .++|||+|=+.
T Consensus       153 ~~~GaD~Ik~~  163 (235)
T cd00958         153 AELGADIVKTK  163 (235)
T ss_pred             HHHCCCEEEec
Confidence            89999999774

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=86.61  E-value=10  Score=36.39  Aligned_cols=163  Identities=19%  Similarity=0.165  Sum_probs=90.1

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH-----HH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK-----VA  280 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~-----l~  280 (426)
                      .++.+.+.+++-|-+.-..                +.   ...+.....+..+    +.+.+.|..+......     +.
T Consensus        24 ~~~~a~~~~~~av~v~p~~----------------~~---~~~~~~~~~~~~~----~~vi~fp~g~~~~~~k~~~~~~~   80 (236)
T PF01791_consen   24 LCREAIEYGFDAVCVTPGY----------------VK---PAAELLAGSGVKV----GLVIGFPFGTSTTEPKGYDQIVA   80 (236)
T ss_dssp             HHHHHHHHTSSEEEEEGGG----------------HH---HHHHHSTTSTSEE----EEEESTTTSSSTHHHHTCEEEHH
T ss_pred             HHHHHHHhCCCEEEECHHH----------------HH---HHHHHhhcccccc----ceEEEeCCCCCccccccccchHH
Confidence            4567778898888876321                11   2222222223333    3335566655444444     44


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC--CceEEEEeCCCcCcH----------HHHHHHHHHc
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVP--VEKLAVHLHDTYGQS----------LPNILISLQM  345 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p--~~~i~~H~HNd~GlA----------~ANaLaAl~a  345 (426)
                       -++.+.++|||.|-+.=-.|...+   ..+.+.++.+++...  .+++-+. -.-.+..          ...+..|.++
T Consensus        81 -~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~  158 (236)
T PF01791_consen   81 -EVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAEL  158 (236)
T ss_dssp             -HHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHh
Confidence             477788999998877655644444   445555556555431  3456666 5556666          5556777899


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh---CC------CC--CCcChhhHHHHHHHHHHH
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG---LG------VE--TNVDLRKLMLAGDFINKH  403 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~---lG------~~--~~iDl~~L~~la~~v~~~  403 (426)
                      |||+|=++..+-          ..+..+++..+.+.   ..      +.  -|++.+.+.+..+...++
T Consensus       159 GaD~vKt~tg~~----------~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~  217 (236)
T PF01791_consen  159 GADFVKTSTGKP----------VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEF  217 (236)
T ss_dssp             T-SEEEEE-SSS----------SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHH
T ss_pred             CCCEEEecCCcc----------ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHH
Confidence            999999888732          22343443333221   22      22  367777777766666643

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=86.53  E-value=13  Score=38.29  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                      .+++.+.+.++.+.+.|+.+|.|. + |.    ..++.+.++++.+++.+|.+.+++.     -+...-...-.++|++.
T Consensus       103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r  175 (366)
T TIGR02351       103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG  175 (366)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence            367777777877778888888776 2 32    3346677777777777764333221     13333333334778887


Q ss_pred             EeecccCC
Q 014369          350 VDCSVAGL  357 (426)
Q Consensus       350 VD~Sv~Gl  357 (426)
                      +...+--+
T Consensus       176 ~~i~lET~  183 (366)
T TIGR02351       176 VTVYQETY  183 (366)
T ss_pred             EEEEeecC
Confidence            76655543

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=86.50  E-value=31  Score=33.76  Aligned_cols=98  Identities=20%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++..++.|++.|.+.-+++|.+     ..|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++.+
T Consensus        24 i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~~a   88 (281)
T cd00408          24 VEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAVAG-RVPVIAGV---------GANSTREAIELARHA   88 (281)
T ss_pred             HHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCccHHHHHHHHHHH
Confidence            3445556666666666666532     23445554444444444331 22222111         122345566666666


Q ss_pred             HhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhc
Q 014369          287 HDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       287 ~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~  319 (426)
                      .++|+|.|-+.=-. -..+++++.+.++.+.+..
T Consensus        89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~  122 (281)
T cd00408          89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS  122 (281)
T ss_pred             HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence            66676654443221 1234566666666666553

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]

Probab=86.49  E-value=1.5  Score=42.35  Aligned_cols=122  Identities=23%  Similarity=0.310  Sum_probs=72.4

Q ss_pred             HHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369          185 VMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  260 (426)
Q Consensus       185 v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~  260 (426)
                      +.+.++++  .+++++-+. +..++++.|.+.|++.|-++...- +.|.. ....-.+..++++...+++|.++|+.|.+
T Consensus       113 l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~-~~~~~~~~el~rl~~~a~~A~~lGL~VnA  191 (243)
T COG0854         113 LRDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHDA-AEQARADAELERLAKAAKLAAELGLKVNA  191 (243)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCCh-HHHHHHHHHHHHHHHHHHHHHHcCceEec
Confidence            34445543  467888777 688999999999999999986421 11110 00001123688999999999999998862


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHH--HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369          261 YVSCVVGCPVEGAIPPSKVAYVAKE--LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       261 ~v~~~fg~pd~~r~~~~~l~~~~~~--l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~  317 (426)
                            |   ++ .+...+..+++.  +.+..+---.++|.+=++.+..|.++...++.
T Consensus       192 ------G---Hg-Lty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~  240 (243)
T COG0854         192 ------G---HG-LTYHNVKPLAAIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKR  240 (243)
T ss_pred             ------C---CC-ccccchHHHhcCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence                  1   11 222233333322  22222222223556667778888887777654

>cd00945 Aldolase_Class_I Class I aldolases

Probab=86.43  E-value=25  Score=31.75  Aligned_cols=81  Identities=19%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HHHHHHHHHHHHHhc-CCceEEE--EeCCCcCcHHHHH--HHHHHcC
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PVEKLAV--HLHDTYGQSLPNI--LISLQMG  346 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~~v~~li~~l~~~~-p~~~i~~--H~HNd~GlA~ANa--LaAl~aG  346 (426)
                      ..+...+.++.+.++|+|.+.+.-..+...   ++.+.+.++.+.+.. .+.++-+  ..+.+........  ..+.+.|
T Consensus        63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g  142 (201)
T cd00945          63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG  142 (201)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            367888889999999999998876665443   578888888888874 2233333  2233322222111  1245789


Q ss_pred             CCEEeeccc
Q 014369          347 ISTVDCSVA  355 (426)
Q Consensus       347 a~~VD~Sv~  355 (426)
                      ++.|-.+..
T Consensus       143 ~~~iK~~~~  151 (201)
T cd00945         143 ADFIKTSTG  151 (201)
T ss_pred             CCEEEeCCC
Confidence            999987764

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PLN02389 biotin synthase

Probab=86.25  E-value=6.4  Score=41.05  Aligned_cols=130  Identities=21%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHH
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l  315 (426)
                      +.++.++    .++.+++.|+.-. .+...+-.......+.+++.++++.+.+.|..   ++=+.|.++++++..|-++=
T Consensus       117 s~EeIl~----~a~~~~~~G~~~~-~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAG  188 (379)
T PLN02389        117 SKDDVLE----AAKRAKEAGSTRF-CMGAAWRDTVGRKTNFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAG  188 (379)
T ss_pred             CHHHHHH----HHHHHHHcCCCEE-EEEecccCCCCChhHHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcC
Confidence            4455544    4556667787532 12111101111113457888888888776643   34588998888887775552


Q ss_pred             HHhcCCceEE--------EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          316 MAVVPVEKLA--------VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       316 ~~~~p~~~i~--------~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      ...++. .|+        +|...++---+...-.|-++|...--+-|.|+||        ..-...+.+..|+.+
T Consensus       189 ld~~~~-~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE--------t~edrv~~l~~Lr~L  254 (379)
T PLN02389        189 LTAYNH-NLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE--------AEEDRVGLLHTLATL  254 (379)
T ss_pred             CCEEEe-eecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC--------CHHHHHHHHHHHHhc
Confidence            222221 122        2333466677788888899999888888999998        233444455555555

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=86.24  E-value=6.8  Score=40.38  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC----CCCCCHH----------
Q 014369          242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT----IGVGTPG----------  306 (426)
Q Consensus       242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT----~G~~~P~----------  306 (426)
                      +++.++.+.|++.++-|-+     |.+     .+.+.+..+.+++.+++.. +|.+...    .+..+.+          
T Consensus         2 ~~~k~iL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~   71 (345)
T cd00946           2 DDVLKLFDYAKENGFAIPA-----VNC-----TSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAG   71 (345)
T ss_pred             hHHHHHHHHHHHCCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhh
Confidence            3467888999999987653     322     4678899999999999977 5555443    1222111          


Q ss_pred             --HHHHHHHHHHHhcCCceEEEEeCCCcCcH-----HHHHH--------HHHHcCCC--EEeecccCCCCCCCCCCCCCc
Q 014369          307 --TVVPMLEAVMAVVPVEKLAVHLHDTYGQS-----LPNIL--------ISLQMGIS--TVDCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       307 --~v~~li~~l~~~~p~~~i~~H~HNd~GlA-----~ANaL--------aAl~aGa~--~VD~Sv~GlGecP~a~graGN  369 (426)
                        .+..++..+.+.... |+.+|.  |.|.-     ....+        .|+++|.+  ++|+|-..+-+        -.
T Consensus        72 ~~~~~~~v~~~A~~~~V-PValHL--DHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eE--------NI  140 (345)
T cd00946          72 AIAAAHHVRSMAEHYGV-PVVLHT--DHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEE--------NI  140 (345)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEEEC--CCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHH--------HH
Confidence              577888888777753 566654  55555     34444        45588988  77999776655        12


Q ss_pred             ccHHHHHHHHHhCC
Q 014369          370 VATEDVVYMLSGLG  383 (426)
Q Consensus       370 a~lEevv~~L~~lG  383 (426)
                      .-|-++|...+.+|
T Consensus       141 ~~TkevVe~Ah~~g  154 (345)
T cd00946         141 EICKKYLERMAKIN  154 (345)
T ss_pred             HHHHHHHHHHHHcC
Confidence            34566666665433

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR00492 alr alanine racemase

Probab=86.17  E-value=29  Score=35.47  Aligned_cols=112  Identities=12%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-ChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      .++++.|.++|++.+.+.+            .+|.....+...+..+..+.+ ..++++.+++.++ .+.+.        
T Consensus        43 ~~i~~~l~~~G~~~~~vas------------~~Ea~~lr~~G~~~~ilvl~~~~~~~~~~~~~~~l-~~~v~--------  101 (367)
T TIGR00492        43 IEVAKTLLQAGADYFGVAN------------LEEAITLRKAGITAPILLLGGFFAEDLKILAAWDL-TTTVH--------  101 (367)
T ss_pred             HHHHHHHHHCCCCEEEECc------------HHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHHcCC-EEEEC--------
Confidence            6799999999999888764            234333333223345555554 4567888888775 33331        


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC--CCHHHHHHHHHHHHhC-CCC-EEEE
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IPPSKVAYVAKELHDM-GCF-EISL  296 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r--~~~~~l~~~~~~l~~~-Gad-~I~l  296 (426)
                                .++.+..+-+.++++|.++.+.|..-.|.   +|  .+++.+.++++.+... +.. ...|
T Consensus       102 ----------s~~~l~~l~~~a~~~~~~~~V~l~VdtGm---~R~Gi~~~e~~~~~~~i~~~~~l~~l~Gi  159 (367)
T TIGR00492       102 ----------SVEQLQALEEALLKEPKRLKVHLKIDTGM---NRLGVKPDEAALFVQKLRQLKKFLELEGI  159 (367)
T ss_pred             ----------CHHHHHHHHHHHHHcCCceEEEEEeeCCC---CCCCCChHHHHHHHHHHHhCCCCCCceEE
Confidence                      13444455556677786666656543331   23  4566666766666554 455 4444

This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=86.16  E-value=20  Score=34.27  Aligned_cols=121  Identities=21%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHhC-CCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEE-EeCChhhHHHHHHcCCCEEEE
Q 014369          145 VPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPV-LTPNLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~-l~~~~~di~~a~~~Gv~~V~i  220 (426)
                      .+.++.++.++.|.+. |.-.|++..  +.          +-+++++.+  .++++.+ .+-+......|+++|++.|..
T Consensus        61 ~~~e~~i~~a~~l~~~~~~~~iKIP~--T~----------~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP  128 (211)
T cd00956          61 TDAEGMVAEARKLASLGGNVVVKIPV--TE----------DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSP  128 (211)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEEcC--cH----------hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEE
Confidence            5788899999999887 666666642  21          222333322  2555544 456788888999999999888


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |+.--     ...+.   +.++.+.++.+.++..|+.+.+  ..      ++--++..+.+    +..+|++.+.++
T Consensus       129 ~vgR~-----~~~g~---dg~~~i~~i~~~~~~~~~~tki--l~------As~r~~~ei~~----a~~~Gad~vTv~  185 (211)
T cd00956         129 FVGRI-----DDLGG---DGMELIREIRTIFDNYGFDTKI--LA------ASIRNPQHVIE----AALAGADAITLP  185 (211)
T ss_pred             ecChH-----hhcCC---CHHHHHHHHHHHHHHcCCCceE--Ee------cccCCHHHHHH----HHHcCCCEEEeC
Confidence            86521     22343   4566777888889999988663  21      23234555444    446999999886

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=86.12  E-value=7.3  Score=40.49  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEecc
Q 014369          148 GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      ....++++.|.++|++.|.+-.- ....+...-.+...+.+.++.. ++.+.+ -+.+.++.+.+.++|+|.|.+...
T Consensus       141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G  217 (368)
T PRK08649        141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIG  217 (368)
T ss_pred             cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCC
Confidence            34578999999999999999421 1100000001345555555553 444433 335678888899999999977643

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=86.09  E-value=26  Score=34.11  Aligned_cols=125  Identities=22%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++|-..|++.|.|...                     .++|+.+|+. +++|.  ++         ..+|+.+...+   
T Consensus        34 ~AA~~ggAt~vDIAad---------------------p~LV~~~~~~s~lPIC--VS---------aVep~~f~~aV---   78 (242)
T PF04481_consen   34 KAAEIGGATFVDIAAD---------------------PELVKLAKSLSNLPIC--VS---------AVEPELFVAAV---   78 (242)
T ss_pred             HHHHccCCceEEecCC---------------------HHHHHHHHHhCCCCeE--ee---------cCCHHHHHHHH---
Confidence            3444568899999753                     2566666664 56665  22         35677766544   


Q ss_pred             HhCCCCEEEEcCC------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH--HHHHHHHHHcCCCEEeecccCCC
Q 014369          287 HDMGCFEISLGDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS--LPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       287 ~~~Gad~I~l~DT------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA--~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                       ++|+|.|.|..=      -=.+..++|-.|.+..|+.+|+++|.+-.-..+-+-  +--+..-..+|+|+|.+- +|--
T Consensus        79 -~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE-Ggts  156 (242)
T PF04481_consen   79 -KAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE-GGTS  156 (242)
T ss_pred             -HhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC-CCCC
Confidence             689998888742      234667899999999999999988888555444433  344455568999999864 3333


Q ss_pred             CCCCCCCCCCc
Q 014369          359 GCPYAKGASGN  369 (426)
Q Consensus       359 ecP~a~graGN  369 (426)
                      .-|+.+|--|+
T Consensus       157 s~p~~~g~lgl  167 (242)
T PF04481_consen  157 SKPTSPGILGL  167 (242)
T ss_pred             CCCCCcchHHH
Confidence            33555554333

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK05926 hypothetical protein; Provisional

Probab=86.04  E-value=17  Score=37.80  Aligned_cols=77  Identities=13%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNI  339 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANa  339 (426)
                      ...+++.+.+.++.+ +.|+.+|.|..  |..   ..+.+.++++.+++.+|.  +.+|+-         +..|+...-.
T Consensus        97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~  171 (370)
T PRK05926         97 WFYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEV  171 (370)
T ss_pred             ccCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHH
Confidence            346789999999888 79999999994  554   236678899999999985  455543         3456666776


Q ss_pred             HHHH-HcCCCEEeec
Q 014369          340 LISL-QMGISTVDCS  353 (426)
Q Consensus       340 LaAl-~aGa~~VD~S  353 (426)
                      +..+ +||++.+...
T Consensus       172 l~~LkeAGl~~~~g~  186 (370)
T PRK05926        172 LQTLKIAGLDSIPGG  186 (370)
T ss_pred             HHHHHHcCcCccCCC
Confidence            7776 6699877643

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=86.01  E-value=15  Score=38.04  Aligned_cols=78  Identities=9%  Similarity=0.041  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .+++.+.+.++.+.+.|+..|.|.-  +.-...++.+.++++.+++.+|.  +.+|.   ..+.......--++|++.++
T Consensus       104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~--i~i~~---g~lt~e~l~~Lk~aGv~r~~  178 (371)
T PRK09240        104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS--VSIEV---QPLSEEEYAELVELGLDGVT  178 (371)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC--ceecc---CCCCHHHHHHHHHcCCCEEE
Confidence            3566666666666666666666642  22223445666666666665553  22221   22322222233366666655


Q ss_pred             ecccC
Q 014369          352 CSVAG  356 (426)
Q Consensus       352 ~Sv~G  356 (426)
                      ..+--
T Consensus       179 i~lET  183 (371)
T PRK09240        179 VYQET  183 (371)
T ss_pred             EEEec
Confidence            54443

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=85.99  E-value=23  Score=32.77  Aligned_cols=109  Identities=12%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             hhHHHHHHcCCCEEEEe------ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCCCHH
Q 014369          205 KGFEAAIAAGAKEVAIF------ASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~------~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      +.++.+.+.|++.|++-      ++.+.            ..+    +.++..++ ...++.+.++..         +++
T Consensus        15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~------------~~~----~~v~~i~~~~~~~v~v~lm~~---------~~~   69 (210)
T TIGR01163        15 EEVKAVEEAGADWIHVDVMDGHFVPNLT------------FGP----PVLEALRKYTDLPIDVHLMVE---------NPD   69 (210)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCCCCCcc------------cCH----HHHHHHHhcCCCcEEEEeeeC---------CHH
Confidence            56778889999999993      33111            112    22333332 234554445531         233


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                         ++++.+.++|+|.|.+.+-    .+......++.+++.-....+.+..|+.     ...+.++..++++|
T Consensus        70 ---~~~~~~~~~gadgv~vh~~----~~~~~~~~~~~~~~~g~~~~~~~~~~t~-----~e~~~~~~~~~d~i  130 (210)
T TIGR01163        70 ---RYIEDFAEAGADIITVHPE----ASEHIHRLLQLIKDLGAKAGIVLNPATP-----LEFLEYVLPDVDLV  130 (210)
T ss_pred             ---HHHHHHHHcCCCEEEEccC----CchhHHHHHHHHHHcCCcEEEEECCCCC-----HHHHHHHHhhCCEE
Confidence               3466777999999999762    2455566667766653333466666654     44556666778865

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=85.98  E-value=13  Score=37.97  Aligned_cols=16  Identities=6%  Similarity=-0.203  Sum_probs=7.5

Q ss_pred             ChhhHHHHHHHHHHHh
Q 014369          389 DLRKLMLAGDFINKHL  404 (426)
Q Consensus       389 Dl~~L~~la~~v~~~~  404 (426)
                      ....+.++.+.+.+.+
T Consensus       171 ~P~~v~~~v~~l~~~l  186 (337)
T PRK08195        171 LPEDVRDRVRALRAAL  186 (337)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            4444554444544444

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=85.90  E-value=15  Score=36.56  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHhCC-CCeEEEe--cCCCCC-ccccccCHHHHHHHhHhc---CCCcEEE-EeCChhh----HHHHHH
Q 014369          145 VPTGVKVELIRRLVSSG-LPVVEAT--SFVSPK-WVPQLADARDVMEAVRDL---EGARLPV-LTPNLKG----FEAAIA  212 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~G-v~~IEvG--~~~s~~-~~p~~~D~~~v~~~i~~~---~~~~l~~-l~~~~~d----i~~a~~  212 (426)
                      .+.++-.+.++.+.++| ++.||+-  .|..+. ...-..+.+.+.+.++.+   -+..+.+ +.++..+    ++.+.+
T Consensus       101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~  180 (301)
T PRK07259        101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE  180 (301)
T ss_pred             CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH
Confidence            36788899999999999 9999994  232221 111113344444444433   2333333 3344433    355677


Q ss_pred             cCCCEEEEeccCChH--HHh-------hhc-CCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          213 AGAKEVAIFASASEA--FSK-------SNI-NCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~--~~~-------~~~-~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      +|++.|.++-.+...  +.+       ... +.+-........+.+..+++ .+++|.+         ..+-.+++.+.+
T Consensus       181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~---------~GGI~~~~da~~  251 (301)
T PRK07259        181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIG---------MGGISSAEDAIE  251 (301)
T ss_pred             cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEE---------ECCCCCHHHHHH
Confidence            899988775322110  000       000 01100000011233333333 2565541         123456766555


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~  317 (426)
                      +.    .+|||.|.++=..=. .|.-+.++.+.+.+
T Consensus       252 ~l----~aGAd~V~igr~ll~-~P~~~~~i~~~l~~  282 (301)
T PRK07259        252 FI----MAGASAVQVGTANFY-DPYAFPKIIEGLEA  282 (301)
T ss_pred             HH----HcCCCceeEcHHHhc-CcHHHHHHHHHHHH
Confidence            44    479988887755433 67777777666644

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=85.85  E-value=20  Score=37.08  Aligned_cols=136  Identities=15%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC--cEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI--PVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~--~v~~~v~~~fg~pd~~r  273 (426)
                      .++|.++|.|.|.|...-        |+.  ++...+|-+.++=...+.++++.+|+. |.  .|.+-++..-..+..+-
T Consensus       156 A~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~  235 (370)
T cd02929         156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGI  235 (370)
T ss_pred             HHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCC
Confidence            356678999988886442        333  333456778888888888888888875 53  34444442111111122


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---------C-HHHHHHHHHHHHHhcCCceEEEE-eCCCcCcHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG---------T-PGTVVPMLEAVMAVVPVEKLAVH-LHDTYGQSLPNILIS  342 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---------~-P~~v~~li~~l~~~~p~~~i~~H-~HNd~GlA~ANaLaA  342 (426)
                      .+++...++++.+.+. +|.|.+.  .|..         . +....++++.+++.+.. ++..- ..+    ....+..+
T Consensus       236 ~~~~e~~~~~~~l~~~-~D~i~vs--~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~i~----~~~~~~~~  307 (370)
T cd02929         236 ESEGEGVEFVEMLDEL-PDLWDVN--VGDWANDGEDSRFYPEGHQEPYIKFVKQVTSK-PVVGVGRFT----SPDKMVEV  307 (370)
T ss_pred             CCHHHHHHHHHHHHhh-CCEEEec--CCCccccccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----CHHHHHHH
Confidence            4678888888888765 5766552  2211         1 11224567778887754 33332 222    23567778


Q ss_pred             HHcC-CCEE
Q 014369          343 LQMG-ISTV  350 (426)
Q Consensus       343 l~aG-a~~V  350 (426)
                      ++.| +|.|
T Consensus       308 l~~g~~D~V  316 (370)
T cd02929         308 VKSGILDLI  316 (370)
T ss_pred             HHcCCCCee
Confidence            8877 7765

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=85.82  E-value=39  Score=33.51  Aligned_cols=182  Identities=16%  Similarity=0.132  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHhC----CCCeEEEecCC-----CCCcc--ccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcC
Q 014369          146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG  214 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~----Gv~~IEvG~~~-----s~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~G  214 (426)
                      +.++..++++.|.++    |+..+==|+|-     +|...  +.+.+.=.+++.+++--+..+..=+-...+++.+.+. 
T Consensus        14 s~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-   92 (258)
T TIGR01362        14 SEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-   92 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-
Confidence            567788999999885    55544444332     22222  1111222334444433445544444567888888877 


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      +|.+.|...     +..+            -++++.+.+.|..|-  |-.      .--.++++....++.+...|-+.|
T Consensus        93 vDilQIgAr-----n~rn------------~~LL~a~g~t~kpV~--lKr------G~~~t~~e~l~aaeyi~~~Gn~~v  147 (258)
T TIGR01362        93 VDIIQIPAF-----LCRQ------------TDLLVAAAKTGRIVN--VKK------GQFLSPWDMKNVVEKVLSTGNKNI  147 (258)
T ss_pred             CcEEEeCch-----hcch------------HHHHHHHhccCCeEE--ecC------CCcCCHHHHHHHHHHHHHcCCCcE
Confidence            899998642     2211            155666666677664  221      112578888899999999999988


Q ss_pred             EEcC---CCCCCC-HHHHHHHHHHHHH-hcCCceEEE-Ee-----------CCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          295 SLGD---TIGVGT-PGTVVPMLEAVMA-VVPVEKLAV-HL-----------HDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       295 ~l~D---T~G~~~-P~~v~~li~~l~~-~~p~~~i~~-H~-----------HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .|+.   |.|+.. -.++.. +..+++ .+|.+ +.. |.           =-+.-+-.+-+.+|+.+|||.+=.=+.
T Consensus       148 iLcERG~tf~y~r~~~D~~~-ip~~k~~~~PVi-~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvH  223 (258)
T TIGR01362       148 LLCERGTSFGYNNLVVDMRS-LPIMRELGCPVI-FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETH  223 (258)
T ss_pred             EEEeCCCCcCCCCcccchhh-hHHHHhcCCCEE-EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            8886   333311 112222 223333 24531 222 65           334556678999999999996544333

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=85.82  E-value=4.5  Score=41.29  Aligned_cols=105  Identities=11%  Similarity=0.016  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHH---HHH
Q 014369          241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPML---EAV  315 (426)
Q Consensus       241 l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li---~~l  315 (426)
                      |-.++++.+.|++.++-|-+     |.+     .+.+.+..+++++.+.+.. +|.+.... .+.-+..+..++   ..+
T Consensus         9 lv~~k~lL~~A~~~~yAV~A-----fN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~   78 (321)
T PRK07084          9 LVNTREMFAKAVKGGYAIPA-----YNF-----NNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY   78 (321)
T ss_pred             ccCHHHHHHHHHHCCceEEE-----EEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence            45567888999999987753     321     3578999999999999876 55554433 222222233344   444


Q ss_pred             HHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369          316 MAVVP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  357 (426)
Q Consensus       316 ~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  357 (426)
                      .+... .+|+.+|  =|.|.-......|+++|.+  .+|+|-..+
T Consensus        79 a~~a~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiD~S~lp~  121 (321)
T PRK07084         79 AKELGCPIPIVLH--LDHGDSFELCKDCIDSGFSSVMIDGSHLPY  121 (321)
T ss_pred             HHHcCCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEeeCCCCCH
Confidence            44331 2356655  5668888999999999998  669886543

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=85.75  E-value=9.5  Score=37.17  Aligned_cols=175  Identities=17%  Similarity=0.158  Sum_probs=103.3

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCC
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGA  215 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv  215 (426)
                      +-+....+.|.++||+=.-.+..+. |.    .=++..+.+..++.+.+++|.               ++||+.+.++|+
T Consensus        12 ~~l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~   87 (241)
T COG3142          12 EGLLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGV   87 (241)
T ss_pred             hhHHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCC
Confidence            4456678899999999532211111 11    223444444466777777741               258999999999


Q ss_pred             CEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       216 ~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      +.|.+-....+-..-          +++++++++.|..  +.|.  +=.+|   |.. .||   .+..+.+.++|+.+|-
T Consensus        88 ~GVV~G~lt~dg~iD----------~~~le~Li~aA~g--L~vT--FHrAF---D~~-~d~---~~ale~li~~Gv~RIL  146 (241)
T COG3142          88 QGVVLGALTADGNID----------MPRLEKLIEAAGG--LGVT--FHRAF---DEC-PDP---LEALEQLIELGVERIL  146 (241)
T ss_pred             CcEEEeeecCCCccC----------HHHHHHHHHHccC--Ccee--eehhh---hhc-CCH---HHHHHHHHHCCCcEEe
Confidence            999888766553211          4556777777764  4444  22334   222 233   3466788899998765


Q ss_pred             EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH-HHcCCCEEeecccC
Q 014369          296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTVDCSVAG  356 (426)
Q Consensus       296 l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA-l~aGa~~VD~Sv~G  356 (426)
                      =  +-|..++.+-..+++.+.+...+ +|.+=.  --|.-..|...- ...|++.+|+|-..
T Consensus       147 T--sGg~~sa~eg~~~l~~li~~a~g-ri~Im~--GaGV~~~N~~~l~~~tg~~e~H~s~~~  203 (241)
T COG3142         147 T--SGGKASALEGLDLLKRLIEQAKG-RIIIMA--GAGVRAENIAELVLLTGVTEVHGSAGV  203 (241)
T ss_pred             c--CCCcCchhhhHHHHHHHHHHhcC-CEEEEe--CCCCCHHHHHHHHHhcCchhhhhcccc
Confidence            2  34456666666666666655422 122211  123334555444 68899999999876

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=85.71  E-value=18  Score=35.24  Aligned_cols=74  Identities=11%  Similarity=-0.002  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-CCCCCH-------HHHHHHHHHHHhCCCCEEEEc--CCCCCCCHH
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPP-------SKVAYVAKELHDMGCFEISLG--DTIGVGTPG  306 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-~~r~~~-------~~l~~~~~~l~~~Gad~I~l~--DT~G~~~P~  306 (426)
                      +++.++.+++.++.|+++|.++.. +   ++... ....+.       +.+.++++.+.+.|+. |.|-  ++.=..++.
T Consensus        89 r~~~~~~~~~~i~~a~~lG~~~v~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t~~  163 (279)
T TIGR00542        89 RQQGLEIMEKAIQLARDLGIRTIQ-L---AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSSIS  163 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEE-e---cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcCHH
Confidence            456788999999999999998542 2   22111 011112       3455667777777873 3333  222234556


Q ss_pred             HHHHHHHHH
Q 014369          307 TVVPMLEAV  315 (426)
Q Consensus       307 ~v~~li~~l  315 (426)
                      ++.++++.+
T Consensus       164 ~~~~li~~v  172 (279)
T TIGR00542       164 KWLKWDHYL  172 (279)
T ss_pred             HHHHHHHHc
Confidence            666655444

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=85.68  E-value=26  Score=36.02  Aligned_cols=148  Identities=20%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             HHHHHhCCCCeEEEe------cCCCCCccc-cccCHHHHHHHhHhcCCCcEEE-------EeCChhhH-----HHHHHcC
Q 014369          154 IRRLVSSGLPVVEAT------SFVSPKWVP-QLADARDVMEAVRDLEGARLPV-------LTPNLKGF-----EAAIAAG  214 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG------~~~s~~~~p-~~~D~~~v~~~i~~~~~~~l~~-------l~~~~~di-----~~a~~~G  214 (426)
                      ++.++++||+.|=+|      ..-.+...| .+.+--...+.+++..+..+.+       ...+.++.     +...++|
T Consensus        48 A~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaG  127 (332)
T PLN02424         48 AVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGG  127 (332)
T ss_pred             HHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhC


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee------ecC---CCCCCCCHHHHHHHHHH
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VGC---PVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~------fg~---pd~~r~~~~~l~~~~~~  285 (426)
                      ++-|.|                 |.......+.|+...+.|++|.++|-..      +|.   -..+......+.+-+++
T Consensus       128 a~aVKl-----------------EGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~a  190 (332)
T PLN02424        128 MDAVKL-----------------EGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALA  190 (332)
T ss_pred             CcEEEE-----------------CCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHH


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  326 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~  326 (426)
                      +.++||+.|.|.     +.|..   +.+.+.+.++...|++
T Consensus       191 le~AGAf~ivLE-----~Vp~~---la~~It~~l~IPtIGI  223 (332)
T PLN02424        191 LQEAGCFAVVLE-----CVPAP---VAAAITSALQIPTIGI  223 (332)
T ss_pred             HHHcCCcEEEEc-----CCcHH---HHHHHHHhCCCCEEee

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase

Probab=85.57  E-value=53  Score=34.83  Aligned_cols=158  Identities=11%  Similarity=0.058  Sum_probs=98.1

Q ss_pred             CCCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccc-cC--HHHHHHHhHhcCCCcEE-EEeC------C---hhhHH
Q 014369          143 NTVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEGARLP-VLTP------N---LKGFE  208 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~~~v~~~i~~~~~~~l~-~l~~------~---~~di~  208 (426)
                      ..++.++..+++..+.+ .+|..|-++-. .    |-+ .|  .+.+++.++.+|.++.. ..++      .   .+-++
T Consensus       136 ~~ls~eei~~~i~yI~~~p~I~~VlLSGG-D----PLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~  210 (417)
T TIGR03820       136 SIPSKEQILEGIEYIRNTPQIRDVLLSGG-D----PLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVA  210 (417)
T ss_pred             ccCCHHHHHHHHHHHHhcCCCCEEEEeCC-c----cccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHH
Confidence            35688888888888887 48877666421 1    211 22  24445666667766522 2222      1   12334


Q ss_pred             HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      ...+.+.  +.+.++.+-          ..|..+.+.++++..++.|+.+...-...-|-    --+++.+.++.+.+.+
T Consensus       211 ~Lk~~~~--~~v~~h~nh----------p~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV----ND~~~~l~~L~~~L~~  274 (417)
T TIGR03820       211 ILKKHHP--VWLNTHFNH----------PREITASSKKALAKLADAGIPLGNQSVLLAGV----NDCPRIMKKLVHKLVA  274 (417)
T ss_pred             HHHhcCC--eEEEEeCCC----------hHhChHHHHHHHHHHHHcCCEEEeeceEECCc----CCCHHHHHHHHHHHHH
Confidence            4445553  444333322          13456777888999999999876422221121    2368889999999999


Q ss_pred             CCC--CEEEEcCCCCCCC----H-HHHHHHHHHHHHhcCC
Q 014369          289 MGC--FEISLGDTIGVGT----P-GTVVPMLEAVMAVVPV  321 (426)
Q Consensus       289 ~Ga--d~I~l~DT~G~~~----P-~~v~~li~~l~~~~p~  321 (426)
                      +|+  .-++.+|-+....    | .+..++++.++.+.++
T Consensus       275 ~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG  314 (417)
T TIGR03820       275 NRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG  314 (417)
T ss_pred             CCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence            996  5888899765432    2 5668999999998764

This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=85.53  E-value=5.7  Score=39.89  Aligned_cols=124  Identities=9%  Similarity=0.044  Sum_probs=83.4

Q ss_pred             HHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEcCCCC--------CCCHHHHHHHHHH
Q 014369          246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG---CFEISLGDTIG--------VGTPGTVVPMLEA  314 (426)
Q Consensus       246 ~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G---ad~I~l~DT~G--------~~~P~~v~~li~~  314 (426)
                      ++|+.++..+..++  |.       .+|=+..-+..+.+.+...|   .+++.|.|++=        ....+.+.+-++.
T Consensus       112 ~~V~~~~~~~~~~~--I~-------~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~  182 (284)
T PRK06096        112 QMLALLRERYPDGN--IA-------CTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQ  182 (284)
T ss_pred             HHHHHHHhhCCCcE--EE-------ecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHH
Confidence            55677776666655  22       24544556667777777776   46999999981        1123457788999


Q ss_pred             HHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-----C----CC
Q 014369          315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-----G----VE  385 (426)
Q Consensus       315 l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l-----G----~~  385 (426)
                      +|+..|..+|++-+-     -+.-+..|+++|||+|-.               .|.+.|++-.+.+.+     +    ..
T Consensus       183 ~r~~~~~~kIeVEv~-----tleqa~ea~~agaDiI~L---------------Dn~~~e~l~~av~~~~~~~~~~~leaS  242 (284)
T PRK06096        183 LRRHAPEKKIVVEAD-----TPKEAIAALRAQPDVLQL---------------DKFSPQQATEIAQIAPSLAPHCTLSLA  242 (284)
T ss_pred             HHHhCCCCCEEEECC-----CHHHHHHHHHcCCCEEEE---------------CCCCHHHHHHHHHHhhccCCCeEEEEE
Confidence            999888666777774     567788899999999854               456666665554432     1    12


Q ss_pred             CCcChhhHHHHHH
Q 014369          386 TNVDLRKLMLAGD  398 (426)
Q Consensus       386 ~~iDl~~L~~la~  398 (426)
                      .||+++.+.+.+.
T Consensus       243 GGI~~~ni~~yA~  255 (284)
T PRK06096        243 GGINLNTLKNYAD  255 (284)
T ss_pred             CCCCHHHHHHHHh
Confidence            4789988887665

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=85.50  E-value=26  Score=36.77  Aligned_cols=161  Identities=16%  Similarity=0.068  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEE--ecCC----CCCccccccCHHHHHHHhHhcCC-CcEEEEe---CChhhH----HHHH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEA--TSFV----SPKWVPQLADARDVMEAVRDLEG-ARLPVLT---PNLKGF----EAAI  211 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEv--G~~~----s~~~~p~~~D~~~v~~~i~~~~~-~~l~~l~---~~~~di----~~a~  211 (426)
                      +.++-.++++.+.++|++.||+  +.|.    ......-..|++.+.+.++.+.. +.+.+++   ++..++    +.+.
T Consensus       111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~  190 (420)
T PRK08318        111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAK  190 (420)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHH


Q ss_pred             HcCCCEEEEeccCCh--------------HHHhhhc-CCCHHHHHHHHHHHHHHHHhc----CCcEEEEEEeeecCCCCC
Q 014369          212 AAGAKEVAIFASASE--------------AFSKSNI-NCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd--------------~~~~~~~-~~s~~e~l~~~~~~v~~Ak~~----G~~v~~~v~~~fg~pd~~  272 (426)
                      ++|++.|.++-.+..              +|.+... +.|=.-......+.|..+++.    .+.+.+         ..+
T Consensus       191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig---------~GG  261 (420)
T PRK08318        191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISG---------IGG  261 (420)
T ss_pred             HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEe---------ecC


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~  319 (426)
                      -.+.+++.+...    +||+.|-++=..-.--|.-+.++++.+.+.+
T Consensus       262 I~s~~da~e~i~----aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l  304 (420)
T PRK08318        262 IETWRDAAEFIL----LGAGTVQVCTAAMQYGFRIVEDMISGLSHYM  304 (420)
T ss_pred             cCCHHHHHHHHH----hCCChheeeeeeccCCchhHHHHHHHHHHHH

>PRK06582 coproporphyrinogen III oxidase; Provisional

Probab=85.45  E-value=30  Score=36.12  Aligned_cols=94  Identities=16%  Similarity=0.047  Sum_probs=62.3

Q ss_pred             CcEEEEe-C---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       195 ~~l~~l~-~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      ..+++=+ |   +.+.++...++|+.+|.+.+..-+-..-..+|+  +.++    +.++++.+++.+..+.+.++  +|.
T Consensus        98 ~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~----~~~ai~~~~~~~~~v~~DlI--~Gl  171 (390)
T PRK06582         98 TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQ----AIKTIEAANTIFPRVSFDLI--YAR  171 (390)
T ss_pred             CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHH----HHHHHHHHHHhCCcEEEEee--cCC
Confidence            4555544 3   246678888899999999885443333344555  4444    44566677777767777776  677


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |..   +.+.+.+-++.+.+++++.|++=
T Consensus       172 Pgq---t~e~~~~~l~~~~~l~p~his~y  197 (390)
T PRK06582        172 SGQ---TLKDWQEELKQAMQLATSHISLY  197 (390)
T ss_pred             CCC---CHHHHHHHHHHHHhcCCCEEEEe
Confidence            754   45677777778888998877653

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=85.43  E-value=11  Score=35.83  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             eCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          201 TPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       201 ~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +|+.++++..+++|++.|.+=....+          +.   +.+.+++++.|+.+..+.+.+           .+.|+  
T Consensus        51 TPT~~ev~~l~~aGadIIAlDaT~R~----------Rp---~~l~~li~~i~~~~~l~MADi-----------st~ee--  104 (192)
T PF04131_consen   51 TPTLKEVDALAEAGADIIALDATDRP----------RP---ETLEELIREIKEKYQLVMADI-----------STLEE--  104 (192)
T ss_dssp             S-SHHHHHHHHHCT-SEEEEE-SSSS-----------S---S-HHHHHHHHHHCTSEEEEE------------SSHHH--
T ss_pred             CCCHHHHHHHHHcCCCEEEEecCCCC----------CC---cCHHHHHHHHHHhCcEEeeec-----------CCHHH--
Confidence            35678999999999999998543221          22   445677888888883333222           22333  


Q ss_pred             HHHHHHHhCCCCEEEE------cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          281 YVAKELHDMGCFEISL------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l------~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                        ++.+.++|+|.|.-      .+|.+ -.|  =.+|++.+.+. . .++-.-+|-+   -...+..|+++||..|
T Consensus       105 --~~~A~~~G~D~I~TTLsGYT~~t~~-~~p--D~~lv~~l~~~-~-~pvIaEGri~---tpe~a~~al~~GA~aV  170 (192)
T PF04131_consen  105 --AINAAELGFDIIGTTLSGYTPYTKG-DGP--DFELVRELVQA-D-VPVIAEGRIH---TPEQAAKALELGAHAV  170 (192)
T ss_dssp             --HHHHHHTT-SEEE-TTTTSSTTSTT-SSH--HHHHHHHHHHT-T-SEEEEESS-----SHHHHHHHHHTT-SEE
T ss_pred             --HHHHHHcCCCEEEcccccCCCCCCC-CCC--CHHHHHHHHhC-C-CcEeecCCCC---CHHHHHHHHhcCCeEE
Confidence              55677899999864      56666 233  24677777765 3 3555544432   2467789999999865

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=85.40  E-value=15  Score=36.78  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCC-CCCHHHHHHHHHHHHHhcCCceEEEEeC---------CCcCcHHHHHHHH
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS  342 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-~~~P~~v~~li~~l~~~~p~~~i~~H~H---------Nd~GlA~ANaLaA  342 (426)
                      ..+++.+.+.++.+.+.|+.+|.|.+-.. ...++.+.++++.+++..|.  +.+|+=         ...|+...-.+..
T Consensus        35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~  112 (309)
T TIGR00423        35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR  112 (309)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            46899999999999999999999984322 24567789999999998774  444421         2456666666666


Q ss_pred             H-HcCCCEEe
Q 014369          343 L-QMGISTVD  351 (426)
Q Consensus       343 l-~aGa~~VD  351 (426)
                      + +||++.+.
T Consensus       113 LkeAGl~~i~  122 (309)
T TIGR00423       113 LKKAGLDSMP  122 (309)
T ss_pred             HHHcCCCcCC
Confidence            6 67998774

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=85.34  E-value=38  Score=32.96  Aligned_cols=179  Identities=17%  Similarity=0.173  Sum_probs=107.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---C-----hhhHHHHHH
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N-----LKGFEAAIA  212 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---~-----~~di~~a~~  212 (426)
                      ...+.++..+++..-.+.|+..+-+    +|.|+|.      ..+.++.-...++...+  |   +     ....+.|++
T Consensus        19 ~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~   88 (228)
T COG0274          19 PDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAIE   88 (228)
T ss_pred             CCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHHH
Confidence            3567788888888888888766554    4555542      12233321123344433  3   1     135677889


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|+++|.+.++....     .....+...+.++.+++.+..+ ..+-+-+.       ....+.+.....++.+.++|+|
T Consensus        89 ~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlE-------t~~Lt~ee~~~A~~i~~~aGAd  155 (228)
T COG0274          89 NGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILE-------TGLLTDEEKRKACEIAIEAGAD  155 (228)
T ss_pred             cCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEe-------ccccCHHHHHHHHHHHHHhCCC
Confidence            999999999875442     2335667777788888888775 33332222       1235566778899999999999


Q ss_pred             EEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          293 EISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       293 ~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -|-=.=  +.|-++++++.-|.+.+...     +++-.----.. ..-+++-+++|+.+|
T Consensus       156 FVKTSTGf~~~gAT~edv~lM~~~vg~~-----vgvKaSGGIrt-~eda~~~i~aga~Ri  209 (228)
T COG0274         156 FVKTSTGFSAGGATVEDVKLMKETVGGR-----VGVKASGGIRT-AEDAKAMIEAGATRI  209 (228)
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHhccC-----ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence            654221  24677888888777776433     33322211111 245566677887655

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=85.33  E-value=37  Score=33.03  Aligned_cols=141  Identities=13%  Similarity=0.064  Sum_probs=82.5

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCC--cEE-EEeCC--hhhHHHHHHcCCCEEEEeccCC
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLP-VLTPN--LKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~--~l~-~l~~~--~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .++++.+.++|.+.|-+=+=+.       .+..+.++.+++. +.  +.. ++.|.  .+.++..+. -+|.|-+. ++.
T Consensus        81 ~~~i~~~~~aGad~It~H~Ea~-------~~~~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiM-tV~  150 (228)
T PRK08091         81 FEVAKACVAAGADIVTLQVEQT-------HDLALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLD-QIDLIQIL-TLD  150 (228)
T ss_pred             HHHHHHHHHhCCCEEEEcccCc-------ccHHHHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHh-hcCEEEEE-EEC
Confidence            4577888888988776533111       2344555556542 33  443 34453  466766655 36776665 455


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP  305 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P  305 (426)
                      +-|.-.++   .++++++++++-++.+++|+.+...+       |++ .+.+    -++.+.++|||.+... |. ++.-
T Consensus       151 PGfgGQ~f---~~~~l~KI~~lr~~~~~~~~~~~IeV-------DGG-I~~~----ti~~l~~aGaD~~V~G-Sa-lF~~  213 (228)
T PRK08091        151 PRTGTKAP---SDLILDRVIQVENRLGNRRVEKLISI-------DGS-MTLE----LASYLKQHQIDWVVSG-SA-LFSQ  213 (228)
T ss_pred             CCCCCccc---cHHHHHHHHHHHHHHHhcCCCceEEE-------ECC-CCHH----HHHHHHHCCCCEEEEC-hh-hhCC
Confidence            54443332   45788888888888888887643211       333 4444    4556778999988776 32 4432


Q ss_pred             HHHHHHHHHHHHh
Q 014369          306 GTVVPMLEAVMAV  318 (426)
Q Consensus       306 ~~v~~li~~l~~~  318 (426)
                      .+..+.++.++..
T Consensus       214 ~d~~~~i~~l~~~  226 (228)
T PRK08091        214 GELKTTLKEWKSS  226 (228)
T ss_pred             CCHHHHHHHHHHh
Confidence            3466667776653

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=85.27  E-value=16  Score=36.65  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEe
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~  221 (426)
                      ..=++.|.++|+|+|+.+--..|        .++....++..-+..+.+=++|+.+..++.+.|++.|+--
T Consensus        79 ~~Ea~~L~~~GvDiIDeTe~lrP--------ade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt  141 (287)
T TIGR00343        79 FVEAQILEALGVDYIDESEVLTP--------ADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTK  141 (287)
T ss_pred             HHHHHHHHHcCCCEEEccCCCCc--------HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEecc
Confidence            45578899999999974432222        3566666664335666666789988888999999999875

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=85.26  E-value=6.7  Score=39.20  Aligned_cols=125  Identities=11%  Similarity=0.026  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEcCC----------CCCCCHHHHH
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG---CFEISLGDT----------IGVGTPGTVV  309 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G---ad~I~l~DT----------~G~~~P~~v~  309 (426)
                      ...++|+.+++.+..+++         ..+|=+...+..+.+.+...|   .+++.|.|+          .|..  +.+.
T Consensus       108 ~T~~~V~~~~~~~~~~~I---------~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~--~~i~  176 (277)
T TIGR01334       108 YTHKMVTLAKKISPMAVV---------ACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDN--FDWG  176 (277)
T ss_pred             HHHHHHHHHHhcCCCCEE---------EecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCc--ccHH


Q ss_pred             HHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC-------
Q 014369          310 PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-------  382 (426)
Q Consensus       310 ~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l-------  382 (426)
                      +.++.+|+..|..+|++-+.     .+.-+.+|+++|+|+|               --=|.+.|++....+.+       
T Consensus       177 ~av~~~r~~~~~~kIeVEv~-----tleea~ea~~~GaDiI---------------~lDn~~~e~l~~~v~~l~~~~~~~  236 (277)
T TIGR01334       177 GAIGRLKQTAPERKITVEAD-----TIEQALTVLQASPDIL---------------QLDKFTPQQLHHLHERLKFFDHIP  236 (277)
T ss_pred             HHHHHHHHhCCCCCEEEECC-----CHHHHHHHHHcCcCEE---------------EECCCCHHHHHHHHHHHhccCCCE


Q ss_pred             --CCCCCcChhhHHHHHH
Q 014369          383 --GVETNVDLRKLMLAGD  398 (426)
Q Consensus       383 --G~~~~iDl~~L~~la~  398 (426)
                        -.-.||+++.+.+.++
T Consensus       237 ~leasGGI~~~ni~~ya~  254 (277)
T TIGR01334       237 TLAAAGGINPENIADYIE  254 (277)
T ss_pred             EEEEECCCCHHHHHHHHh

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=85.11  E-value=19  Score=35.07  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             hHHHHhhcCCCCccE-EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc
Q 014369          114 DITNKFLKGIPRFVK-IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL  192 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~-I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~  192 (426)
                      +...++++.++..+. .+|.     .    ..++.++.+++++.|.+.|+..||--.+.        .|. +.++.+++.
T Consensus       117 ~~v~~vr~~~g~~~~l~vDa-----n----~~~~~~~a~~~~~~l~~~~i~~iEeP~~~--------~d~-~~~~~l~~~  178 (265)
T cd03315         117 AVVAALREAVGDDAELRVDA-----N----RGWTPKQAIRALRALEDLGLDYVEQPLPA--------DDL-EGRAALARA  178 (265)
T ss_pred             HHHHHHHHhcCCCCEEEEeC-----C----CCcCHHHHHHHHHHHHhcCCCEEECCCCc--------ccH-HHHHHHHhh
Confidence            455666666765543 3444     2    34789999999999999999999985321        122 334445533


Q ss_pred             CCCcEEEE--eCChhhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          193 EGARLPVL--TPNLKGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       193 ~~~~l~~l--~~~~~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      .++.+.+=  ..+..+++.+++.+ ++.|.+=..             .-.-+....++++.|+.+|+++.
T Consensus       179 ~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~-------------~~GGi~~~~~~~~~A~~~gi~~~  235 (265)
T cd03315         179 TDTPIMADESAFTPHDAFRELALGAADAVNIKTA-------------KTGGLTKAQRVLAVAEALGLPVM  235 (265)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecc-------------cccCHHHHHHHHHHHHHcCCcEE
Confidence            34443331  23567788877655 676666322             11235667789999999999887

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor

Probab=85.00  E-value=31  Score=36.01  Aligned_cols=57  Identities=11%  Similarity=0.140  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC--ChhhHHHHHHcCCCEEE
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP--NLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~--~~~di~~a~~~Gv~~V~  219 (426)
                      -..|++.|.+.|+ .+|+.+            ..|+..+++ ..+..++.--.|  ..++++.|++.|+..+.
T Consensus        48 ~~~il~~l~~~G~-g~DvaS------------~gEl~~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~  107 (394)
T cd06831          48 TPAVLEILAALGT-GFACSS------------KNEMALVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMT  107 (394)
T ss_pred             CHHHHHHHHHcCC-CeEeCC------------HHHHHHHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence            3567788888885 455543            234444444 234444333334  35678888888876554

Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.

>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase

Probab=84.98  E-value=31  Score=34.96  Aligned_cols=30  Identities=13%  Similarity=0.198  Sum_probs=18.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC-ceEEEEeCC
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHD  330 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~-~~i~~H~HN  330 (426)
                      .|+..+++..++++.+.+ .|. ...++|+|.
T Consensus       139 ~Gv~~~~~~~~l~~~i~~-~~~l~l~Gi~~y~  169 (358)
T cd06819         139 CGVPPGEAALALARTIAA-LPGLRFAGLQAYH  169 (358)
T ss_pred             CCCCChHHHHHHHHHHHh-CCCceEeEEEeeC
Confidence            566556777777777655 342 246777755

Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=84.97  E-value=22  Score=36.85  Aligned_cols=125  Identities=13%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEcCCCCCCCHHHHHHHHH
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLE  313 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G~~~P~~v~~li~  313 (426)
                      +|.++..    ++++.+.+.|++.. .++   |.+-.-  . ..+.++++.+.+. |...+.+ .|.|++.+..+.    
T Consensus        90 ls~eei~----~~i~~~~~~Gv~~I-~~t---GGEPll--r-~dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~----  153 (373)
T PLN02951         90 LSQDEIV----RLAGLFVAAGVDKI-RLT---GGEPTL--R-KDIEDICLQLSSLKGLKTLAM-TTNGITLSRKLP----  153 (373)
T ss_pred             CCHHHHH----HHHHHHHHCCCCEE-EEE---CCCCcc--h-hhHHHHHHHHHhcCCCceEEE-eeCcchHHHHHH----
Confidence            4555554    45556667787531 232   322111  2 2466777777776 7666666 689998776544    


Q ss_pred             HHHHh-cCCceEEEEeC-----------CCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 014369          314 AVMAV-VPVEKLAVHLH-----------DTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYML  379 (426)
Q Consensus       314 ~l~~~-~p~~~i~~H~H-----------Nd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L  379 (426)
                      .+++. +..+.|.++..           .++...+.+.-+|.++|..  .|.+++.- |.        -.-.+++++..+
T Consensus       154 ~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~--------N~~Ei~~li~~a  224 (373)
T PLN02951        154 RLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF--------NDDEICDFVELT  224 (373)
T ss_pred             HHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC--------CHHHHHHHHHHH
Confidence            44433 22234555542           1223445666667788875  34444431 11        113466777777


Q ss_pred             HhCCC
Q 014369          380 SGLGV  384 (426)
Q Consensus       380 ~~lG~  384 (426)
                      +..|+
T Consensus       225 ~~~gi  229 (373)
T PLN02951        225 RDKPI  229 (373)
T ss_pred             HhCCC
Confidence            76664

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=84.96  E-value=36  Score=32.28  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      .+-+++++.+.+.|++.+=+=-. .....  ...+ .++++.+.+..+.++.+  -.+..++++.+.++|++.|-+... 
T Consensus        28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g--~~~~-~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~-  103 (230)
T TIGR00007        28 DDPVEAAKKWEEEGAERIHVVDLDGAKEG--GPVN-LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA-  103 (230)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccC--CCCc-HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH-
Confidence            35688999999999987665211 11000  0012 24444444333333333  457889999999999998765321 


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecC--CCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC--PVEGA-IPPSKVAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~--pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                                     .++....+.+.+++.|. .+.+.+-.--+.  ....+ .+.....++++.+.+.|++.|.+-|-.
T Consensus       104 ---------------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~  168 (230)
T TIGR00007       104 ---------------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS  168 (230)
T ss_pred             ---------------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec
Confidence                           12222334445556653 243322211000  00001 112344567888889999977766543


Q ss_pred             --CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEE
Q 014369          301 --GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTV  350 (426)
Q Consensus       301 --G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~V  350 (426)
                        |...... .++++.+++..+. ++.+-+    |... .-...+.+.||+.|
T Consensus       169 ~~g~~~g~~-~~~i~~i~~~~~i-pvia~G----Gi~~~~di~~~~~~Gadgv  215 (230)
T TIGR00007       169 RDGTLSGPN-FELTKELVKAVNV-PVIASG----GVSSIDDLIALKKLGVYGV  215 (230)
T ss_pred             CCCCcCCCC-HHHHHHHHHhCCC-CEEEeC----CCCCHHHHHHHHHCCCCEE
Confidence              3333322 5566777766442 444433    1111 22333445777754

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=84.83  E-value=30  Score=34.18  Aligned_cols=138  Identities=19%  Similarity=0.261  Sum_probs=80.3

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEee
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV  265 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~  265 (426)
                      +-++.+++ .+.-..+.+.++|++.+.+..++    ....+      ..|.++++..++.+.+.+   ... |.+.+   
T Consensus        11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~----~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD~---   80 (254)
T cd06557          11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSL----GMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVADM---   80 (254)
T ss_pred             CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHH----HHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEeC---
Confidence            34555544 34445566778899988643332    22223      347788887776655443   333 33222   


Q ss_pred             ecCCCCC-CCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCc-eEEE--EeCCCcC------
Q 014369          266 VGCPVEG-AIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVE-KLAV--HLHDTYG------  333 (426)
Q Consensus       266 fg~pd~~-r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~-~i~~--H~HNd~G------  333 (426)
                         |+.+ ..+++...+.+.++.+ +|++.|.|-|.      .++.+.|+++++. +|.. +|++  ..++.+|      
T Consensus        81 ---~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~g  151 (254)
T cd06557          81 ---PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQG  151 (254)
T ss_pred             ---CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceecc
Confidence               3333 3568887776666655 99999999996      3677777777764 3421 2222  3333332      


Q ss_pred             -------cHHHHHHHHHHcCCCEE
Q 014369          334 -------QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 -------lA~ANaLaAl~aGa~~V  350 (426)
                             -++.-+.+-.+|||+.|
T Consensus       152 rt~~~a~~~i~ra~a~~~AGA~~i  175 (254)
T cd06557         152 KTEEEAERLLEDALALEEAGAFAL  175 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEE
Confidence                   22345556669999866

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PLN02433 uroporphyrinogen decarboxylase

Probab=84.81  E-value=6.2  Score=40.26  Aligned_cols=72  Identities=15%  Similarity=0.041  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcC-CCCCCCHHHHHHHHH--------HHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          277 SKVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLE--------AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~D-T~G~~~P~~v~~li~--------~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      +.+.++++...++|++.|.+.| +.|.+.|.+..+++.        .+++..+..++.+|.+.+.    ...-.-.+.|+
T Consensus       179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~  254 (345)
T PLN02433        179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV  254 (345)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC


Q ss_pred             CEEee
Q 014369          348 STVDC  352 (426)
Q Consensus       348 ~~VD~  352 (426)
                      +.+..
T Consensus       255 ~~i~~  259 (345)
T PLN02433        255 DVIGL  259 (345)
T ss_pred             CEEEc

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=84.79  E-value=12  Score=35.98  Aligned_cols=12  Identities=17%  Similarity=0.205  Sum_probs=5.8

Q ss_pred             HHHHHHHhcCCc
Q 014369          246 AVAHAAKVLSIP  257 (426)
Q Consensus       246 ~~v~~Ak~~G~~  257 (426)
                      ++++...+.|+.
T Consensus        23 ~i~~~L~~~GV~   34 (265)
T cd03174          23 EIAEALDEAGVD   34 (265)
T ss_pred             HHHHHHHHcCCC
Confidence            444444455654

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=84.64  E-value=16  Score=36.72  Aligned_cols=152  Identities=15%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEe--ccCChH-
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF--ASASEA-  227 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~--~~~Sd~-  227 (426)
                      ..=++.|.++|+|+|..+--..|        .++....++.--+..+.+=++++.+..++.+.|++.|+--  ..+.+. 
T Consensus        86 ~~Ea~~L~~~GvDiID~Te~lrp--------ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~  157 (293)
T PRK04180         86 FVEAQILEALGVDYIDESEVLTP--------ADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVV  157 (293)
T ss_pred             HHHHHHHHHcCCCEEeccCCCCc--------hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence            55578899999999974321122        3455666664235555555688988889999999999875  111110 


Q ss_pred             -----------HHhhhcCCCHHHHHHH------HHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          228 -----------FSKSNINCSIEDSLVR------YRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       228 -----------~~~~~~~~s~~e~l~~------~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                                 ..+.-.+.|.++....      -.+.++.+++. .++|. +|+  .    .+-.+|+.+..+.    ++
T Consensus       158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV-~~A--e----GGI~TPedaa~vm----e~  226 (293)
T PRK04180        158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVV-NFA--A----GGIATPADAALMM----QL  226 (293)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEE-EEE--e----CCCCCHHHHHHHH----Hh
Confidence                       0111123343331110      11334444443 34442 222  1    2333777655544    68


Q ss_pred             CCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCC
Q 014369          290 GCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       290 Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ||+.|.+.=.+ ..-.|.+..+-+.....++.+
T Consensus       227 GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~  259 (293)
T PRK04180        227 GADGVFVGSGIFKSGDPEKRARAIVEATTHYDD  259 (293)
T ss_pred             CCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence            99987765432 223676655544444455544

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=84.64  E-value=11  Score=37.45  Aligned_cols=107  Identities=15%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHhCC---CCEEEEcCCCCCCCH-----HHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMG---CFEISLGDTIGVGTP-----GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~G---ad~I~l~DT~G~~~P-----~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +|-+...+..+.+.+...|   .+++.|.|++..-.=     .++..-++.+|+.+| ..+|++=+|+-     .-+++|
T Consensus       120 TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~-----eea~~A  194 (265)
T TIGR00078       120 TRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESL-----EEAEEA  194 (265)
T ss_pred             cCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCH-----HHHHHH
Confidence            4555556666666666554   347777776544221     124555788888886 56788888853     778899


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCC--CC----CCcChhhHHHHHH
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG--VE----TNVDLRKLMLAGD  398 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG--~~----~~iDl~~L~~la~  398 (426)
                      +++|+|+|               .-||...|++-...+.+.  +.    -||+++.+.++++
T Consensus       195 ~~~gaDyI---------------~ld~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~  241 (265)
T TIGR00078       195 AEAGADII---------------MLDNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAE  241 (265)
T ss_pred             HHcCCCEE---------------EECCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence            99999988               334555566555554321  22    3788888887665

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
2cw6_A	298	Crystal Structure Of Human Hmg-Coa Lyase: Insights		7e-98
3mp4_A	298	Crystal Structure Of Human Lyase R41m Mutant Length		5e-97
2ftp_A	302	Crystal Structure Of Hydroxymethylglutaryl-Coa Lyas		1e-82
1ydn_A	295	Crystal Structure Of The Hmg-Coa Lyase From Brucell		2e-70
1ydo_A	307	Crystal Structure Of The Bacillis Subtilis Hmg-Coa		1e-60
2nx9_A	464	Crystal Structure Of The Carboxyltransferase Domain		1e-07
1rqe_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		2e-05
3rmj_A	370	Crystal Structure Of Truncated Alpha-Isopropylmalat		3e-05
1u5j_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		3e-05
1s3h_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		3e-05
3ivs_A	423	Homocitrate Synthase Lys4 Length = 423		1e-04
3ivt_A	423	Homocitrate Synthase Lys4 Bound To 2-Og Length = 42		2e-04
3eeg_A	325	Crystal Structure Of A 2-Isopropylmalate Synthase F		3e-04
1rr2_A	473	Propionibacterium Shermanii Transcarboxylase 5s Sub		6e-04
1rqh_A	472	Propionibacterium Shermanii Transcarboxylase 5s Sub		6e-04

>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria Length = 298

Iteration: 1
 Score =  353 bits (907), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 173/297 (58%), Positives = 215/297 (72%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 183 RDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLV 242
            +V++ ++   G   PVLTPNL                  +ASE F+K NINCSIE+S  
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQ 121
Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+ A+  AA+  +I VRGYVSC +GCP EG I P+KVA V K+ + MGC+EISLGDTIGV
Sbjct: 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV 181
Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTPG +  ML AVM  VP+  LAVH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPY
Sbjct: 182 GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPY 241
Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
           A+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 242 AQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 298

>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant Length = 298

Iteration: 1
 Score =  351 bits (900), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 172/297 (57%), Positives = 214/297 (72%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGP DGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 183 RDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLV 242
            +V++ ++   G   PVLTPNL                  +ASE F+K NINCSIE+S  
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQ 121
Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+ A+  AA+  +I VRGYVSC +GCP EG I P+KVA V K+ + MGC+EISLGDTIGV
Sbjct: 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV 181
Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTPG +  ML AVM  VP+  LAVH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPY
Sbjct: 182 GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPY 241
Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
           A+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 242 AQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 298

>pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From Pseudomonas Aeruginosa Length = 302

Iteration: 1
 Score =  303 bits (776), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/289 (51%), Positives = 196/289 (67%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A +
Sbjct: 5   LPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64
Query: 183 RDVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLV 242
            +V   +R   G     L PNL                  +ASEAFS+ NINCSI+DSL 
Sbjct: 65  AEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLE 124
Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+  V  AA+   + VRGY+SCV+GCP +G + P +VA+VA+EL  MGC+E+SLGDTIGV
Sbjct: 125 RFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV 184
Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GT G    ++EAV + VP E+LA H HDTYGQ+L NI  SL  GI+  D SVAGLGGCPY
Sbjct: 185 GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPY 244
Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
           AKGA+GNVA+EDV+Y+L+GL + T VD+  L+ AG  I   LG+ +GS+
Sbjct: 245 AKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSR 293

>pdb|1YDN|A Chain A, Crystal Structure Of The Hmg-Coa Lyase From Brucella Melitensis, Northeast Structural Genomics Target Lr35. Length = 295

Iteration: 1
 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/273 (51%), Positives = 170/273 (62%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
           V+IVE   RDGLQNEK  VPT  K+ LI RL   G   +EATSFVSPKWVPQLAD+R+V 
Sbjct: 5   VEIVEXAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVX 64
Query: 187 EAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLVRYRA 246
             +R  +G R  VL PN                   SASE FSK+NINC+I +S+ R   
Sbjct: 65  AGIRRADGVRYSVLVPNXKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSP 124
Query: 247 VAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG 306
           V  AA    + +RGYVSCVV CP +G + P  VA V ++L  +GC E+SLGDTIG GTP 
Sbjct: 125 VIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPD 184
Query: 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGA 366
           TV   L+AV+A+ P   LA H HDT G++L NI +SL+ G+   D SV GLGGCP+A GA
Sbjct: 185 TVAAXLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGA 244
Query: 367 SGNVATEDVVYMLSGLGVETNVDLRKLMLAGDF 399
            GNV T  VV  L   G ET +DL +L  AG F
Sbjct: 245 KGNVDTVAVVEXLHEXGFETGLDLDRLRSAGLF 277

>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase, Northeast Structural Genomics Target Sr181. Length = 307

Iteration: 1
 Score =  230 bits (587), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 122/288 (42%), Positives = 167/288 (57%)
Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
           P+ V I EVGPRDGLQNE   + T  K+  I +L  +GL  +E TSFV PKW+P L DA 
Sbjct: 4   PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63
Query: 184 DVMEAVRDLEGARLPVLTPNLXXXXXXXXXXXXXXXXXXSASEAFSKSNINCSIEDSLVR 243
           DV + +   +G     L PN                   SASE  ++ NIN S  +SL  
Sbjct: 64  DVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFXSASETHNRKNINKSTSESLHI 123
Query: 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
            + V + A+  ++  R Y+S V GCP E  +P  +V  +++ L + G  E+SLGDTIG  
Sbjct: 124 LKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAA 183
Query: 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
            P  V  +LEA++A  P  ++A+H HDT G +L N + +LQ GI+  D S  GLGGCPYA
Sbjct: 184 NPAQVETVLEALLARFPANQIALHFHDTRGTALANXVTALQXGITVFDGSAGGLGGCPYA 243
Query: 364 KGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK 411
            G+SGN ATED+VY L    ++TNV L KL+ A  +I +  G+P  S+
Sbjct: 244 PGSSGNAATEDIVYXLEQXDIKTNVKLEKLLSAAKWIEEKXGKPLPSR 291

>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae Length = 464

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           VA++L ++G   I+L D  G+ TP     ++  +   V VE L +H H T G +   +L 
Sbjct: 163 VAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVE-LHLHCHSTAGLADMTLLK 221
Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
           +++ G+  VD +++ + G        G+ ATE +V  L G G +T +D+ KL
Sbjct: 222 AIEAGVDRVDTAISSMSGT------YGHPATESLVATLQGTGYDTGLDIAKL 267

>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Bound To Oxaloacetate Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 340
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate Synthase From Neisseria Meningitidis Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQ 344
           + G   I++ DT+G   P         ++A  P     V   H H+  G ++ N L +L+
Sbjct: 168 EAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALK 227
Query: 345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFI 400
            G   V+C+V GLG        +GN + E++V  L       G+ET +D  +++ +   +
Sbjct: 228 GGARQVECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLV 281
Query: 401 NKHLGRPSGSKTAI 414
           +   G P     AI
Sbjct: 282 STITGYPVQPNKAI 295

>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit, Met186ile Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 340
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALXDIAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 340
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALXDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|3IVS|A Chain A, Homocitrate Synthase Lys4 Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343
           K +  +G   + + DT+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L
Sbjct: 187 KAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGXAIANAYCAL 245
Query: 344 QMGISTVDCSVAGLG 358
           + G + +D S+ G+G
Sbjct: 246 EAGATHIDTSILGIG 260

>pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og Length = 423

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343
           K +  +G   + + DT+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L
Sbjct: 187 KAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCAL 245
Query: 344 QMGISTVDCSVAGLG 358
           + G + +D S+ G+G
Sbjct: 246 EAGATHIDTSILGIG 260

>pdb|3EEG|A Chain A, Crystal Structure Of A 2-Isopropylmalate Synthase From Cytophaga Hutchinsonii Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 268 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKL 324
           C   G    + +A   + + + G   +++ DT G   P   G  +  L   ++ +    L
Sbjct: 142 CEDAGRADQAFLARXVEAVIEAGADVVNIPDTTGYXLPWQYGERIKYLXDNVSNIDKAIL 201
Query: 325 AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML----S 380
           + H H+  G +  N L +LQ G   V+C++ G+G        +GN A E+VV        
Sbjct: 202 SAHCHNDLGLATANSLAALQNGARQVECTINGIG------ERAGNTALEEVVXAXECHKE 255
Query: 381 GLGVETNVDLRKLM 394
            LG+ET ++ +KL+
Sbjct: 256 TLGLETGINHKKLV 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	0.0
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	0.0
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	0.0
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	1e-179
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	3e-17
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	3e-13
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	3e-08
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	1e-07
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	3e-07
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-07
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	7e-07
3ble_A	337	Citramalate synthase from leptospira interrogans;	9e-06
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	1e-05
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	1e-04
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	2e-04
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	3e-04
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	9e-04

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298

 Score =  513 bits (1323), Expect = 0.0
 Identities = 188/297 (63%), Positives = 231/297 (77%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            +V++ ++   G   PVLTPNLKGFEAA+AAGAKEV IF +ASE F+K NINCSIE+S  
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQ 121

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+ A+  AA+  +I VRGYVSC +GCP EG I P+KVA V K+ + MGC+EISLGDTIGV
Sbjct: 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV 181

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTPG +  ML AVM  VP+  LAVH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPY
Sbjct: 182 GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPY 241

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 419
           A+GASGN+ATED+VYML GLG+ T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 242 AQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 298

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307

 Score =  510 bits (1315), Expect = 0.0
 Identities = 129/296 (43%), Positives = 180/296 (60%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
            P+ V I EVGPRDGLQNE   + T  K+  I +L  +GL  +E TSFV PKW+P L DA
Sbjct: 3   YPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDA 62

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            DV + +   +G     L PN +G E A+  G  E  +F SASE  ++ NIN S  +SL 
Sbjct: 63  IDVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLH 122

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
             + V + A+  ++  R Y+S V GCP E  +P  +V  +++ L + G  E+SLGDTIG 
Sbjct: 123 ILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGA 182

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
             P  V  +LEA++A  P  ++A+H HDT G +L N++ +LQMGI+  D S  GLGGCPY
Sbjct: 183 ANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPY 242

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR 418
           A G+SGN ATED+VYML  + ++TNV L KL+ A  +I + +G+P  S+       
Sbjct: 243 APGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKS 298

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302

 Score =  507 bits (1309), Expect = 0.0
 Identities = 166/294 (56%), Positives = 215/294 (73%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A +
Sbjct: 5   LPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
            +V   +R   G     L PNLKGFEAA+ +G KEVA+FA+ASEAFS+ NINCSI+DSL 
Sbjct: 65  AEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLE 124

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R+  V  AA+   + VRGY+SCV+GCP +G + P +VA+VA+EL  MGC+E+SLGDTIGV
Sbjct: 125 RFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV 184

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GT G    ++EAV + VP E+LA H HDTYGQ+L NI  SL  GI+  D SVAGLGGCPY
Sbjct: 185 GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPY 244

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIAL 416
           AKGA+GNVA+EDV+Y+L+GL + T VD+  L+ AG  I   LG+ +GS+ A AL
Sbjct: 245 AKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKAL 298

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295

 Score =  500 bits (1290), Expect = e-179
 Identities = 155/295 (52%), Positives = 196/295 (66%), Gaps = 1/295 (0%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +   V+IVE+  RDGLQNEK  VPT  K+ LI RL   G   +EATSFVSPKWVPQLAD+
Sbjct: 1   MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADS 60

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
           R+VM  +R  +G R  VL PN+KG+EAA AA A E+A+F SASE FSK+NINC+I +S+ 
Sbjct: 61  REVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIE 120

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302
           R   V  AA    + +RGYVSCVV CP +G + P  VA V ++L  +GC E+SLGDTIG 
Sbjct: 121 RLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR 180

Query: 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY 362
           GTP TV  ML+AV+A+ P   LA H HDT G++L NI +SL+ G+   D SV GLGGCP+
Sbjct: 181 GTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPF 240

Query: 363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALN 417
           A GA GNV T  VV ML  +G ET +DL +L  AG F  + L +   +      +
Sbjct: 241 APGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFT-QALRQDKAALEHHHHH 294

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 62/294 (21%), Positives = 107/294 (36%), Gaps = 40/294 (13%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT------SFVSPKWVPQLA 180
           + I +V  RDG    ++         + R L  + +  +E                 +  
Sbjct: 9   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 68

Query: 181 DARDVMEAVRDLEGARLPVLTPNLKG----FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
           D   +     ++  A++  L     G     + A  AGA+ V +             +C+
Sbjct: 69  DLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVA-----------THCT 117

Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEGAIPPSKVAYVAKELHDMGCFEIS 295
             D  V  + + +A        R      VG   +   IP  K+A   K +   G   I 
Sbjct: 118 EAD--VSKQHIEYA--------RNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIY 167

Query: 296 LGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTVDCSV 354
           + D+ G  +   +   + A  AV+  E ++ +H H      + N +++++ G   VD S+
Sbjct: 168 MADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASL 227

Query: 355 AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLM-LAGDFINKHLGRP 407
           AG+G      GA GN   E  + +   LG     DL  LM  A D +     RP
Sbjct: 228 AGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP 275

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 41/285 (14%), Positives = 81/285 (28%), Gaps = 36/285 (12%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-------SFVSPKWVPQL 179
           +KI++   RDG         + +    I  +    +  +E          ++       +
Sbjct: 3   LKILDCTLRDGGYYTNWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPV 62

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
           +  + +          ++ ++                   +            I    ++
Sbjct: 63  SVLKHLRNIST----KKIAIM------LNEKNTTPEDLNHLLLPIIGLVDMIRIAIDPQN 112

Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IPPSKVAYVAKELHDMGCFEISLG 297
                               G+    VG  V                +  D       + 
Sbjct: 113 IDRAIVLAKAIKT------MGFE---VGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMV 163

Query: 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357
           D+ G  TP  V  +L+ V     V  +  H HD     L N + ++  GI  +D ++ G+
Sbjct: 164 DSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINSITAIDDGIDFIDATITGM 222

Query: 358 GGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402
           G     +GA GN+  E ++  L+      NVD   L         
Sbjct: 223 G-----RGA-GNLKMELLLTYLN-KHHGLNVDFNVLGNIITTFTP 260

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 281 YV--AKELHDMGCFEISLGDTIGVGTP---GTVVPML-EAVMAVVPVEKLAVHLHDTYGQ 334
           YV  A +L DMG   I+L D   +  P     ++  + +       +    +H H T G 
Sbjct: 177 YVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQIN---LHCHSTTGV 233

Query: 335 SLPNILISLQMGISTVDCSV---AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLR 391
           +  +++ +++ G+  VD ++   +   G            TE V  ML G G  TN+D  
Sbjct: 234 TEVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESVAEMLEGTGYTTNLDYD 284

Query: 392 KL 393
           +L
Sbjct: 285 RL 286

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 49/292 (16%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADA 182
                I+E   R+G Q       T  K+++ + L + G+  +E TS   S          
Sbjct: 37  VNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVASE------QSR 90

Query: 183 RDVMEAVRDLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
           +D     +     ++      ++     A+  G   V +    S+   K +    +   +
Sbjct: 91  QDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYII 150

Query: 242 VR-YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--PPSKVAYVAKELHDMGCFEISLGD 298
                 +    K   I VR   S       E +       +  + K +  +G   + + D
Sbjct: 151 DSATEVINFV-KSKGIEVR--FSS------EDSFRSDLVDLLSLYKAVDKIGVNRVGIAD 201

Query: 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG 358
           T+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L+ G + +D S+ G+G
Sbjct: 202 TVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGATHIDTSILGIG 260

Query: 359 GCPYAKGASGNVATEDVV---YMLSGLGVETNVDLRKLMLAGDFINKHLGRP 407
                   +G      ++   Y+     +     L +L    + +   +   
Sbjct: 261 ------ERNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQ 306

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 281 YV--AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSL 336
           +V  A++L ++G   I+L D  G+ TP     ++  +   V   +    +H H T G + 
Sbjct: 160 WVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELH---LHCHSTAGLAD 216

Query: 337 PNILISLQMGISTVDCSV---AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
             +L +++ G+  VD ++   +G  G P         ATE +V  L G G +T +D+ KL
Sbjct: 217 MTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLVATLQGTGYDTGLDIAKL 267

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 26/141 (18%)

Query: 270 VEGAI--------PPSKV----AYV--AKELHDMGCFEISLGDTIGVGTP---GTVVPML 312
           VE AI        P         Y+  A+EL   G   + + D  G+  P     +V  L
Sbjct: 240 VEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSL 299

Query: 313 EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVAT 372
                 +P+    +H HDT G  +  +L   Q G   VD +   + G       +   + 
Sbjct: 300 RDRFPDLPLH---IHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGM------TSQPSM 350

Query: 373 EDVVYMLSGLGVETNVDLRKL 393
             +V    G  ++T V + ++
Sbjct: 351 GALVACTRGTPLDTEVPMERV 371

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 55/287 (19%), Positives = 98/287 (34%), Gaps = 40/287 (13%)

Query: 135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRDLE 193
           R+G Q EK    T  KVE+ + L   G+  +E T+   SP         +D         
Sbjct: 12  REGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVASP------QSRKDAEVLASLGL 65

Query: 194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR-YRAVAHAA 251
            A++       L   + A+  G + + +    S+ + ++     I   +      +A+  
Sbjct: 66  KAKVVTHIQCRLDAAKVAVETGVQGIDLLFGTSK-YLRAPHGRDIPRIIEEAKEVIAYI- 123

Query: 252 KVLSIPVRGYVSCVVGCPVEGAIPP-----SKVAYVAK--ELHDMGCFEISLGDTIGVGT 304
                  R          VE          S+   +    E        + L DT+GV T
Sbjct: 124 -------REA-----APHVEVRFSAEDTFRSEEQDLLAVYEAVAPYVDRVGLADTVGVAT 171

Query: 305 PGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
           P  V  ++  V  VV     +  H H+  G ++ N   +++ G + VD ++ G+G     
Sbjct: 172 PRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIG----- 226

Query: 364 KGASGNVATEDVV---YMLSGLGVETNVDLRKLMLAGDFINKHLGRP 407
              +G       +   Y L    V     L  L      + + +G  
Sbjct: 227 -ERNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVE 272

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 357
           DT+GV +P      +++++   P      H H+ Y  S+ N L +++ G+  +  S+ GL
Sbjct: 190 DTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGL 249

Query: 358 GGCPYAKGASGNVATEDVVYML-SGLGVETNVDLRKLM 394
           G        +GN   E +V  +      +TN++   + 
Sbjct: 250 G------ERAGNTPLEALVTTIHDKSNSKTNINEIAIT 281

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341
           +AKEL   G   +++ D  G+  P     ++  + + V +  + +H HDT G  L     
Sbjct: 697 LAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL-PIHLHTHDTSGNGLLTYKQ 755

Query: 342 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
           ++  G+  +D +VA + G   ++ ++ +     + Y L+G       D+  +
Sbjct: 756 AIDAGVDIIDTAVASMSGL-TSQPSANS-----LYYALNGFPRHLRTDIEGM 801

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPNI 339
           +A EL   G   I++ D  G+  P     + +A+      P+     H HDT G +   +
Sbjct: 714 LAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIH---FHTHDTSGIAAATV 770

Query: 340 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 393
           L +++ G+  VD ++  L G   ++   G      +V  LSG   +  +D   +
Sbjct: 771 LAAVEAGVDAVDAAMDALSGN-TSQPCLG-----SIVEALSGSERDPGLDPAWI 818

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 350
           +++ DT G   P      ++ +M  V  ++K  L+ H H+  G +  N L +LQ G   V
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLMLAGDFINKHLGR 406
           +C++ G+G        +GN A E+VV  +      LG+ET ++ +KL+     ++  +  
Sbjct: 228 ECTINGIG------ERAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRM 281

Query: 407 P 407
            
Sbjct: 282 Q 282

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 350
           I++ DT+G   P         ++A  P   K   + H H+  G ++ N L +L+ G   V
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLM 394
           +C+V GLG        +GN + E++V  L       G+ET +D  +++
Sbjct: 234 ECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTTQIV 275

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 350
           I++ DT+G   P     + + +   +   +    A H HD  G +  N L +++ G   V
Sbjct: 167 INIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRV 226

Query: 351 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLM 394
           + ++ G+G        +GN A E+V   L         ETN+ L +  
Sbjct: 227 EGTINGIG------ERAGNTALEEVAVALHIRKDFYQAETNIVLNQFK 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	100.0
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	100.0
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	100.0
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	100.0
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	100.0
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	100.0
3ble_A	337	Citramalate synthase from leptospira interrogans;	100.0
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	100.0
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	100.0
3hq1_A	644	2-isopropylmalate synthase; LEUA, mycobacterium tu	100.0
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	100.0
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	100.0
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	100.0
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	100.0
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	100.0
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	100.0
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	100.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	100.0
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.81
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	98.62
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.45
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.4
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.32
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.14
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.03
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	98.01
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	97.77
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	97.77
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	97.56
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	97.54
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.5
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.43
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	97.35
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.26
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	97.24
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	97.22
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	97.05
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	97.04
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	96.95
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	96.95
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	96.9
3oa3_A	288	Aldolase; structural genomics, seattle structural	96.86
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.84
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	96.83
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	96.81
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	96.8
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	96.75
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	96.73
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.67
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	96.66
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.64
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	96.61
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.59
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	96.57
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	96.44
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.43
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	96.42
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	96.36
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	96.36
3kws_A	287	Putative sugar isomerase; structural genomics, joi	96.29
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	96.29
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	96.24
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	96.17
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	96.16
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.16
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.12
2q02_A	272	Putative cytoplasmic protein; structural genomics,	96.08
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	96.08
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	96.07
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	96.06
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	96.03
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	96.0
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	95.97
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	95.94
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	95.94
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	95.93
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	95.93
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	95.92
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	95.88
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.88
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	95.75
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.69
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	95.69
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	95.67
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	95.55
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	95.55
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	95.43
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	95.38
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	95.37
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	95.36
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	95.35
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	95.32
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	95.31
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	95.23
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.23
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	95.22
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	95.18
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	95.09
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	95.04
1tv8_A	340	MOAA, molybdenum cofactor biosynthesis protein A;	95.03
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	95.03
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	95.02
3elf_A	349	Fructose-bisphosphate aldolase; zinc enzyme, dihyd	95.02
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	95.02
3oa3_A	288	Aldolase; structural genomics, seattle structural	94.93
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.93
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.85
3eol_A	433	Isocitrate lyase; seattle structural center for in	94.82
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	94.77
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	94.74
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	94.72
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	94.69
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	94.69
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	94.65
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	94.64
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	94.59
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	94.59
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	94.59
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	94.43
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	94.41
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	94.39
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.36
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	94.35
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	94.26
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	94.26
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	94.2
2hk0_A	309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	93.96
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	93.85
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.84
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	93.83
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	93.83
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	93.8
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	93.77
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	93.76
3qm3_A	357	Fructose-bisphosphate aldolase; structural genomic	93.73
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.71
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	93.61
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	93.59
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	93.59
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	93.53
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	93.51
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	93.36
1dos_A	358	Aldolase class II; lyase, classii fructose 1,6-bis	93.36
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	93.31
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.24
3u0h_A	281	Xylose isomerase domain protein; structural genomi	93.2
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	93.19
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	93.17
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	93.13
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	93.09
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	93.08
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	92.91
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	92.84
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	92.82
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	92.76
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	92.75
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	92.72
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	92.72
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	92.71
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	92.67
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	92.65
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	92.59
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	92.55
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	92.51
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	92.49
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	92.48
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	92.46
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	92.44
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	92.4
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	92.32
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	92.31
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	92.31
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	92.2
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	92.19
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	92.18
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	92.08
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	92.03
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	91.99
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	91.95
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	91.94
3pao_A	326	Adenosine deaminase; structural genomics, PSI-2, p	91.92
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	91.9
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	91.89
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	91.87
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	91.81
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	91.74
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	91.73
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	91.67
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.66
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	91.61
4gxw_A	380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	91.49
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	91.43
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	91.31
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	91.27
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	91.27
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.26
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	91.25
2qw5_A	335	Xylose isomerase-like TIM barrel; putative sugar p	91.25
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	91.21
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	91.14
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	91.14
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	91.11
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	91.0
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	90.95
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	90.94
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	90.94
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	90.82
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	90.74
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	90.72
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	90.62
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	90.55
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	90.54
3bdk_A	386	D-mannonate dehydratase; xylose isomerase-like TIM	90.5
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	90.47
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	90.45
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	90.41
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	90.37
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	90.37
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	90.36
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	90.32
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	90.29
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	90.26
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	90.22
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	90.18
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	90.13
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	90.12
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	90.12
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	89.98
2pgf_A	371	Adenosine deaminase; metallo-dependent hydrolase,	89.97
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	89.94
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	89.93
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	89.81
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	89.79
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	89.78
3ktc_A	333	Xylose isomerase; putative sugar isomerase, struct	89.63
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	89.58
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	89.52
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	89.48
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	89.38
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	89.33
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	89.31
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	89.31
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	89.3
3iar_A	367	Adenosine deaminase; purine metabolism structural	89.23
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	89.16
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	89.15
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	89.14
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	89.08
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	89.07
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	89.05
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	89.04
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	89.02
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	88.98
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	88.94
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	88.94
1bxb_A	387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	88.92
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	88.92
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	88.92
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	88.89
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	88.82
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	88.79
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	88.74
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	88.71
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	88.69
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	88.52
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	88.51
3ayv_A	254	Putative uncharacterized protein TTHB071; structur	88.48
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	88.43
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	88.4
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	88.35
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	88.29
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	88.28
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	88.26
1viz_A	240	PCRB protein homolog; structural genomics, unknown	88.22
2a5h_A	416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	88.22
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	88.13
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	88.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	88.07
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	88.06
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	88.01
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	87.99
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	87.96
2bmb_A	545	Folic acid synthesis protein FOL1; folate biosynth	87.94
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	87.85
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	87.84
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	87.83
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	87.82
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	87.73
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	87.69
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	87.61
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	87.6
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	87.49
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	87.26
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	87.25
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	87.04
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	86.97
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	86.94
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	86.86
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	86.81
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	86.78
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	86.74
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	86.68
2h9a_A	445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	86.64
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	86.52
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	86.44
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	86.42
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	86.41
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	86.31
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	86.29
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	86.25
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	86.24
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	86.16
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	86.15
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	86.13
3m0z_A	249	Putative aldolase; MCSG, PSI-2, structural genomic	86.03
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	86.0
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	85.99
3m6y_A	275	4-hydroxy-2-oxoglutarate aldolase; structural geno	85.98
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	85.94
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	85.85
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	85.85
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	85.71
3fst_A	304	5,10-methylenetetrahydrofolate reductase; TIM barr	85.64
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	85.62
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	85.54
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	85.52
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	85.43
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.15
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	85.09
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	85.05
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	84.92
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	84.92
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	84.92
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	84.92
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	84.85
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	84.84
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	84.83
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	84.83
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	84.8
2plj_A	419	Lysine/ornithine decarboxylase; type IV decarboxyl	84.66
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	84.65
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	84.57
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	84.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	84.53
3qtg_A	461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	84.51
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	84.5
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	84.46
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	84.42
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	84.42
2zds_A	340	Putative DNA-binding protein; TIM-barrel fold, str	84.33
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	84.24
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	84.1
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	84.07
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	84.07
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	84.05
1tz9_A	367	Mannonate dehydratase; alpha-beta protein, structu	84.0
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	83.99
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	83.96
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	83.96
2p0o_A	372	Hypothetical protein DUF871; structural genomics,	83.85
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	83.85
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	83.83
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	83.82
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	83.82
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	83.76
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	83.73
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	83.71
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	83.69
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	83.66
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	83.59
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	83.39
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	83.3
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	83.29
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	83.21
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	83.17
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	83.07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	82.98
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	82.98
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	82.87
2z2u_A	311	UPF0026 protein MJ0257; metal binding protein; 2.4	82.52
2y7e_A	282	3-keto-5-aminohexanoate cleavage enzyme; lyase, al	82.48
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	82.41
1ccw_A	137	Protein (glutamate mutase); coenzyme B12, radical	82.34
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	82.32
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	82.31
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	82.26
3apt_A	310	Methylenetetrahydrofolate reductase; TIM barrel, o	82.25
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	82.09
2eja_A	338	URO-D, UPD, uroporphyrinogen decarboxylase; dimer,	82.02
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	81.89
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	81.85
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	81.85
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	81.82
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	81.77
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	81.77
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	81.66
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	81.65
2yx0_A	342	Radical SAM enzyme; predicted tRNA modification en	81.54
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	81.52
3o6c_A	260	PNP synthase, pyridoxine 5'-phosphate synthase; st	81.49
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	81.47
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	81.46
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	81.45
3e49_A	311	Uncharacterized protein DUF849 with A TIM barrel;	81.34
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	81.29
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	81.23
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	81.09
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	81.03
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	80.91
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	80.87
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	80.84
3e02_A	311	Uncharacterized protein DUF849; structural genomic	80.57
2qgh_A	425	Diaminopimelate decarboxylase; lyase; HET: PLP LYS	80.45
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	80.42
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	80.39
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	80.23
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	80.2
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	80.09
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	80.08

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=100.00  E-value=4.4e-74  Score=571.51  Aligned_cols=301  Identities=43%  Similarity=0.722  Sum_probs=289.5

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      .||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+++.+++++++|+
T Consensus         2 ~~~~~v~i~DtTlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~   81 (307)
T 1ydo_A            2 PYPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALV   81 (307)
T ss_dssp             CCCSBCEEEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEEC
T ss_pred             CCCCceEEEECCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEe
Confidence            37889999999999999999999999999999999999999999999999999999999999888877766889999999


Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      +|.+|+++|+++|++.|++|+++||.|.+.|+|+|++++++++.+++++||++|++|+++++++|+||++++++++++.+
T Consensus        82 ~~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~  161 (307)
T 1ydo_A           82 PNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIR  161 (307)
T ss_dssp             CSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred             CCHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      +++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++||||||
T Consensus       162 ~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp  241 (307)
T 1ydo_A          162 LSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCP  241 (307)
T ss_dssp             HHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEET
T ss_pred             HHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCC
Confidence            99999999999999999999999999999999999999877999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhh
Q 014369          362 YAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAAD  422 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h  422 (426)
                      |||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|++.|.+|.....|
T Consensus       242 ~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  302 (307)
T 1ydo_A          242 YAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKSSLEH  302 (307)
T ss_dssp             TEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHTC----
T ss_pred             CCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999998766654

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=100.00  E-value=2.2e-71  Score=549.39  Aligned_cols=297  Identities=63%  Similarity=1.021  Sum_probs=288.3

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      +||++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+++.+++++.+++
T Consensus         1 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~   80 (298)
T 2cw6_A            1 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT   80 (298)
T ss_dssp             CCCSBCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC
T ss_pred             CCCCceEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc
Confidence            37889999999999999999999999999999999999999999999999999999999998888888877889999999


Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      ++.+++++++++|++.|+++.++||.|.+.|++++++++++++.+++++||++|++|+++++++|+||++++++++++.+
T Consensus        81 ~~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~  160 (298)
T 2cw6_A           81 PNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAE  160 (298)
T ss_dssp             CSHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHH
T ss_pred             CCHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      +++.+.++|+++|+|+||+|+++|.++.++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++||||||
T Consensus       161 ~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp  240 (298)
T 2cw6_A          161 VTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCP  240 (298)
T ss_dssp             HHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCT
T ss_pred             HHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCC
Confidence            99999999999999999999999999999999999999977899999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchh
Q 014369          362 YAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR  418 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~  418 (426)
                      |||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|+++|.+|..
T Consensus       241 ~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~~~~  297 (298)
T 2cw6_A          241 YAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCK  297 (298)
T ss_dssp             TSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCCCHHHHHHC-
T ss_pred             CCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhhhhhcc
Confidence            999999999999999999999999999999999999999999999999999988753

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.5e-70  Score=544.56  Aligned_cols=295  Identities=56%  Similarity=0.951  Sum_probs=286.3

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      +||++|+|+|||||||+|+++..|++++|++|+++|+++|+++||+|+|++|+++|++.|.+++++.+.+.+++++++++
T Consensus         4 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   83 (302)
T 2ftp_A            4 NLPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA   83 (302)
T ss_dssp             CCCSBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC
T ss_pred             CCCCCcEEEeCCCCCCccCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe
Confidence            47899999999999999999999999999999999999999999999999999999999998887777666789999999


Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      ++.+++++|+++|++.|++|.+.|+.|++.|+|+|++++++++++++++||++|++|+++|+++|++|++++++|+++.+
T Consensus        84 ~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~  163 (302)
T 2ftp_A           84 PNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAW  163 (302)
T ss_dssp             CSHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred             CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      +++++.++|+|+|+|+||+|+++|.++.++++.+++.+|+++|++|+|||+|||+||+++|+++||++||+|++||||||
T Consensus       164 ~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp  243 (302)
T 2ftp_A          164 VARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCP  243 (302)
T ss_dssp             HHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCG
T ss_pred             HHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCC
Confidence            99999999999999999999999999999999999999877999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccc
Q 014369          362 YAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIAL  416 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG  416 (426)
                      |||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|+++|.++
T Consensus       244 ~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
T 2ftp_A          244 YAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKAL  298 (302)
T ss_dssp             GGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCCSCHHHHHH
T ss_pred             CCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCccchhhc
Confidence            9999999999999999999999999999999999999999999999999999874

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=100.00  E-value=8.7e-69  Score=545.53  Aligned_cols=287  Identities=21%  Similarity=0.304  Sum_probs=266.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  202 (426)
                      +|++|+|+|||||||+|+++..|++++|++|+++|+++||++||+|||+++   |  .|.+.+.+..+..+++++++|+|
T Consensus         9 ~~~~v~I~DtTLRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~r   83 (370)
T 3rmj_A            9 QTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAAS---P--GDFEAVNAIAKTITKSTVCSLSR   83 (370)
T ss_dssp             -CCBCEEEECCCCCCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEEEEGGGC---H--HHHHHHHHHHTTCSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhCCCCeEEEEec
Confidence            689999999999999999999999999999999999999999999998753   2  35566666556778899999996


Q ss_pred             -ChhhHHHHHH----cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 -NLKGFEAAIA----AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 -~~~di~~a~~----~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                       +.+|++++++    +|+++|++|+++||.|+++++|+|++++++++.+++++||++|..|.      |+|||+++++++
T Consensus        84 ~~~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------~~~ed~~r~~~~  157 (370)
T 3rmj_A           84 AIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVE------FSCEDALRSEID  157 (370)
T ss_dssp             SSHHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEE------EEEETGGGSCHH
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE------EecCCCCccCHH
Confidence             7899999988    89999999999999999999999999999999999999999999876      778999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      ++.++++++.++|+++|+|+||+|+++|.+++++|+.+++++|.   .+|++|+|||+|||+||+++|+++||++||+|+
T Consensus       158 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv  237 (370)
T 3rmj_A          158 FLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTV  237 (370)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBG
T ss_pred             HHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEec
Confidence            99999999999999999999999999999999999999999985   689999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHh----CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~----lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      +||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++|+++|+||+++|+|+|||
T Consensus       238 ~GlGe------raGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~aF~h~sGi  307 (370)
T 3rmj_A          238 NGLGE------RAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGI  307 (370)
T ss_dssp             GGCSS------TTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHHHHHHHHHHHHTCCCCSSCTTTSTTTTC-----
T ss_pred             cccCc------ccccccHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHhcccc
Confidence            99999      9999999999999974    599999999999999999999999999999999999999999998

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=6.1e-69  Score=538.37  Aligned_cols=288  Identities=24%  Similarity=0.292  Sum_probs=238.7

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      +||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|||+..   |  .|.+.+.+..+..+++++++|+
T Consensus         2 ~~~~~v~I~DttlRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~   76 (325)
T 3eeg_A            2 SLGKRIFVFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAGFPVSS---P--GDFNSVVEITKAVTRPTICALT   76 (325)
T ss_dssp             --CEECEEEECGGGCC-------CCTTHHHHHHHHHHHHTCSEEEEECTTSC---H--HHHHHHHHHHHHCCSSEEEEEC
T ss_pred             CCCCceEEEECCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--hHHHHHHHHHHhCCCCEEEEee
Confidence            4789999999999999999999999999999999999999999999998643   2  2444454444567899999999


Q ss_pred             C-ChhhHHHHHHc----CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369          202 P-NLKGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       202 ~-~~~di~~a~~~----Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      | +.+|+++|+++    |+++|++|+++||.|++.|+|+|++++++++.+++++||++|+.|.      |+||+++++++
T Consensus        77 r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~~d~~~~~~  150 (325)
T 3eeg_A           77 RAKEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE------FFCEDAGRADQ  150 (325)
T ss_dssp             CSCHHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE------EEEETGGGSCH
T ss_pred             cCCHHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE------EEccccccchH
Confidence            6 67899999998    9999999999999999999999999999999999999999999876      78899999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +++.++++++.++|+++|+|+||+|+++|.+++++|+.+++++|.   .+|++|+|||+|||+||+++|+++||++||+|
T Consensus       151 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~t  230 (325)
T 3eeg_A          151 AFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECT  230 (325)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEB
T ss_pred             HHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            999999999999999999999999999999999999999999985   68999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHh----CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          354 VAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       354 v~GlGecP~a~graGNa~lEevv~~L~~----lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      ++||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++|+++|++|+++|+|+|||
T Consensus       231 v~GlGe------r~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~af~h~sGi  301 (325)
T 3eeg_A          231 INGIGE------RAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRMQVQSNKAIVGRNAFAHSSGI  301 (325)
T ss_dssp             GGGCCS------TTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHTTC--------------------
T ss_pred             cccccc------cccchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHhccc
Confidence            999999      9999999999999984    699999999999999999999999999999999999999999997

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=100.00  E-value=1.7e-66  Score=513.03  Aligned_cols=289  Identities=53%  Similarity=0.849  Sum_probs=276.1

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  202 (426)
                      ||++|+|+|||||||+|+++..|++++|++|+++|+++|+++||+|+|++++++|+++|.+++++.+++.++++++++++
T Consensus         1 ~~~~v~i~d~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~   80 (295)
T 1ydn_A            1 MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVP   80 (295)
T ss_dssp             -CCBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECS
T ss_pred             CCCceEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeC
Confidence            57899999999999999999999999999999999999999999999999999999999998888887667899999999


Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      |.+++++++++|++.|++++++|+.|.+.+++++.+++++++.+++++||++|++|+++|+++||||++++++++++.++
T Consensus        81 n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~  160 (295)
T 1ydn_A           81 NMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASV  160 (295)
T ss_dssp             SHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  362 (426)
                      ++.+.++|++.|+|+||+|.++|.++.++++.+++.+|.++|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus       161 ~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~  240 (295)
T 1ydn_A          161 TEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPF  240 (295)
T ss_dssp             HHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTT
T ss_pred             HHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEeccccCCCCCC
Confidence            99999999999999999999999999999999999998668999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCC
Q 014369          363 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK  411 (426)
Q Consensus       363 a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~  411 (426)
                      ||||+||++||+|+++|+.+|+++++|+++|.+++++++++++...+..
T Consensus       241 a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~~  289 (295)
T 1ydn_A          241 APGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAALE  289 (295)
T ss_dssp             BTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC-----
T ss_pred             CCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCcc
Confidence            9999999999999999999999999999999999999999999887765

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=100.00  E-value=6.6e-67  Score=526.01  Aligned_cols=294  Identities=18%  Similarity=0.216  Sum_probs=264.1

Q ss_pred             cCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHH-HHHhCCCCeEEEecCCC-C---CccccccCHHHHHHHhHhcCCC
Q 014369          121 KGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIR-RLVSSGLPVVEATSFVS-P---KWVPQLADARDVMEAVRDLEGA  195 (426)
Q Consensus       121 ~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~-~L~~~Gv~~IEvG~~~s-~---~~~p~~~D~~~v~~~i~~~~~~  195 (426)
                      .++|++|+|+|||||||+|+++..|++++|++|++ .|+++||+.||+|+|++ |   +++|++++..+   .+..++++
T Consensus        14 ~~~~~~v~I~DtTlRDG~Q~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~~~~~~v~~~~~~~~---~~~~~~~~   90 (337)
T 3ble_A           14 TKVETRLEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSKGELETVQKIMEWAA---TEQLTERI   90 (337)
T ss_dssp             -----CCEEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCTTHHHHHHHHHHHHH---HTTCGGGE
T ss_pred             ccCCCceEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHhhhh---hhccCCCC
Confidence            34789999999999999999999999999999999 99999999999999985 4   22333222111   11145778


Q ss_pred             cEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC
Q 014369          196 RLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       196 ~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~  275 (426)
                      ++++|+++.+++++|+++|++.|++|+++||.|.+.++|+|++++++++.+++++||++|++|+++++.   |++.++++
T Consensus        91 ~i~~l~~~~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~---~~~~~~~~  167 (337)
T 3ble_A           91 EILGFVDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLED---WSNGFRNS  167 (337)
T ss_dssp             EEEEESSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEET---HHHHHHHC
T ss_pred             eEEEEccchhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCCcCC
Confidence            999999998899999999999999999999999999999999999999999999999999999977764   45578999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      ++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|++
T Consensus       168 ~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~  247 (337)
T 3ble_A          168 PDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASIN  247 (337)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGG
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEecc
Confidence            99999999999999999999999999999999999999999999877999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHhC-CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          356 GLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       356 GlGecP~a~graGNa~lEevv~~L~~l-G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      ||||      |+||++||+|+++|+.+ |+++++|+++|.++++++++++|+++|+++|++|.++|+|+|||
T Consensus       248 GlG~------~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~~~~~~~~vg~~~f~h~~Gi  313 (337)
T 3ble_A          248 GLGE------RAGNTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKRISANRPIVGEDVFTQTAGV  313 (337)
T ss_dssp             GCSS------TTCBCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCCCCTTCTTTSTTTTCC----
T ss_pred             cccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCCCccchhhhhhheeccc
Confidence            9999      99999999999999986 99999999999999999999999999999999999999999997

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=100.00  E-value=1.4e-64  Score=520.88  Aligned_cols=287  Identities=17%  Similarity=0.185  Sum_probs=247.4

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      .++++|+|+|||||||+|+++..|++++|++|+++|+++||++||+|||.+   .|+.  .+.+.+..+.....++.+++
T Consensus        35 ~~~~~V~I~DtTLRDG~Q~~~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~P~a---sp~d--~~~~~~i~~~~~~~~v~~~~  109 (423)
T 3ivs_A           35 SRVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVA---SEQS--RQDCEAICKLGLKCKILTHI  109 (423)
T ss_dssp             CCTTSCEEEECTTTGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTS---CHHH--HHHHHHHHTSCCSSEEEEEE
T ss_pred             cCCCcEEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeeccc---CHHH--HHHHHHHHhcCCCCEEEEee
Confidence            356789999999999999999999999999999999999999999999754   3442  22333333333446666665


Q ss_pred             -CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          202 -PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       202 -~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                       ++.+|+++|+++|++.|++|+++|+.|++++++++++++++++.+++++||++|++|+++.      +++++++++++.
T Consensus       110 r~~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~------eda~r~d~~~~~  183 (423)
T 3ivs_A          110 RCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSS------EDSFRSDLVDLL  183 (423)
T ss_dssp             ESCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEE------ESGGGSCHHHHH
T ss_pred             ccChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------ccCcCCCHHHHH
Confidence             5789999999999999999999999999999999999999999999999999999998543      467789999999


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      ++++++.++|+++|+|+||+|+++|.++.++++.+++.++ .+|++|+|||+|||+||+++|+++||++||+|++|+|| 
T Consensus       184 ~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ti~GlGE-  261 (423)
T 3ivs_A          184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGE-  261 (423)
T ss_dssp             HHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-
T ss_pred             HHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEEEEecccccC-
Confidence            9999999999999999999999999999999999999876 47999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCcccHHHHHHHHHh---CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          361 PYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~---lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                           |+||++||+|+++|..   +++++++|+++|.++++++++++|+++|+++||||+++|+|+|||
T Consensus       262 -----RaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~kpivG~~aFah~sGi  325 (423)
T 3ivs_A          262 -----RNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFTHKAGI  325 (423)
T ss_dssp             -----TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTCTTTSTTTTEEECSG
T ss_pred             -----cccchhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhHhHHHhhcch
Confidence                 9999999999999864   367899999999999999999999999999999999999999997

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=100.00  E-value=2.3e-62  Score=500.50  Aligned_cols=281  Identities=20%  Similarity=0.227  Sum_probs=248.7

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeC-C
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTP-N  203 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-~  203 (426)
                      +|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|..   .|++  . +..+.++ ..+++++.++.+ +
T Consensus         3 ~v~I~DtTLRDG~Q~~~~~~~~~~k~~ia~~L~~~Gv~~IE~g~p~~---~~~~--~-~~~~~i~~~~~~~~v~~~~r~~   76 (382)
T 2ztj_A            3 EWKIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVA---SPQS--R-KDAEVLASLGLKAKVVTHIQCR   76 (382)
T ss_dssp             CCEEEEEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTS---CHHH--H-HHHHHHHTSCCSSEEEEEEESC
T ss_pred             ceEEEECCCCcccCCCCCCcCHHHHHHHHHHHHHcCcCEEEEcCCcC---CHHH--H-HHHHHHHhcCCCcEEEEEcccC
Confidence            59999999999999999999999999999999999999999999754   3443  2 2334444 345678888876 5


Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      .+|+++|+++|++.|++|+++|+.|++ ++|+|++++++++.+++++||++|  ++|+++      .++.++++++++.+
T Consensus        77 ~~di~~a~~~g~~~v~i~~~~s~~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~------~ed~~~~~~~~~~~  149 (382)
T 2ztj_A           77 LDAAKVAVETGVQGIDLLFGTSKYLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFS------AEDTFRSEEQDLLA  149 (382)
T ss_dssp             HHHHHHHHHTTCSEEEEEECC---------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEE------ETTTTTSCHHHHHH
T ss_pred             hhhHHHHHHcCCCEEEEEeccCHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE------EEeCCCCCHHHHHH
Confidence            789999999999999999999999999 999999999999999999999999  777632      34778999999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      +++++.++ +++|+|+||+|+++|.+++++|+.+++.+ |..+|++|+|||+|||+||+++|+++||++||+|++|||| 
T Consensus       150 ~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGe-  227 (382)
T 2ztj_A          150 VYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGE-  227 (382)
T ss_dssp             HHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-
T ss_pred             HHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccc-
Confidence            99999999 99999999999999999999999999986 6678999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCcccHHHHHHHHHhC---CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~l---G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                           |+||++||+|+++|+.+   |+++++|+++|.++++++++++|+++|+++|++|.++|+|+|||
T Consensus       228 -----raGN~~lE~vv~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGi  291 (382)
T 2ztj_A          228 -----RNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFSHKAGM  291 (382)
T ss_dssp             -----TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTCTTTSTTTTEECCHH
T ss_pred             -----cccchhHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCCCcCCcchhheeccc
Confidence                 99999999999999753   57899999999999999999999999999999999999999986

>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A

Probab=100.00  E-value=7.4e-62  Score=519.42  Aligned_cols=319  Identities=15%  Similarity=0.086  Sum_probs=275.6

Q ss_pred             cccccccccc-c-CCCCCCchhhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecC
Q 014369           93 HKMFGSACDI-Y-NSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF  170 (426)
Q Consensus        93 ~~~~~~~~~~-~-~s~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~  170 (426)
                      .|++..+..- + ..|.+..+ |+.+++.   +.+.++|+|+|||||+|+++..|++++|++|+++|+++||++||+|||
T Consensus        40 ~~~~~~y~~~~~~~~~~~~~~-r~wp~~~---~~~~p~i~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEaGfP  115 (644)
T 3hq1_A           40 SMPVNRYRPFAEEVEPIRLRN-RTWPDRV---IDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFP  115 (644)
T ss_dssp             CSCGGGCCCHHHHSCCCCCSS-CCGGGCC---CCSCCEEEECCCCCCGGGCSSCCCHHHHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCccccccCccccCCCCCCCC-CCCCCcc---cCCCCEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4666555432 0 12323222 3455554   788899999999999999999999999999999999999999999998


Q ss_pred             CCCCccccccCHHHHHHHhHhc---CCCcEEEEeCChh-hHHHHHH----cCCCEEEEeccCChHHHhhhcCCCHHHHHH
Q 014369          171 VSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLK-GFEAAIA----AGAKEVAIFASASEAFSKSNINCSIEDSLV  242 (426)
Q Consensus       171 ~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~-di~~a~~----~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~  242 (426)
                      .+.   |  .|.+.+.+.++..   +++++++|+++.+ +++++++    ++.+.|++|+++||+|++.++|+|++++++
T Consensus       116 ~as---p--~D~e~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~~a~~~~Vhif~stSd~h~~~~l~~s~eevle  190 (644)
T 3hq1_A          116 SAS---Q--TDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQA  190 (644)
T ss_dssp             TTC---H--HHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHH
T ss_pred             CCC---h--hHHHHHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHH
Confidence            653   2  3566665555542   4799999999864 6887765    677899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC---CCC---EEEEcCCCCCCCHHHHHHHHHHH
Q 014369          243 RYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~---Gad---~I~l~DT~G~~~P~~v~~li~~l  315 (426)
                      .+.++++++++++.. +.+.+.+.|++++.++++++|+.++++++.++   |++   .|+|+||+|+++|.+++++|+.+
T Consensus       191 ~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l  270 (644)
T 3hq1_A          191 IATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWM  270 (644)
T ss_dssp             HHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHH
Confidence            999999988887643 11234445778899999999999999999985   677   89999999999999999999999


Q ss_pred             HHhcC---CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhh
Q 014369          316 MAVVP---VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRK  392 (426)
Q Consensus       316 ~~~~p---~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~  392 (426)
                      ++++|   ..+|++|+|||+|||+||+++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++
T Consensus       271 ~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vdgti~G~GE------RaGNa~LE~lv~~L~~~Gi~tgidl~~  344 (644)
T 3hq1_A          271 SRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSN  344 (644)
T ss_dssp             HHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTT
T ss_pred             HHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEEecCCCCCc------cccCccHHHHHHHHHhcccCCccCHHH
Confidence            99997   468999999999999999999999999999999999999      999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCcccchhhhhhccCC
Q 014369          393 LMLAGDFINKHLGRPSGSKTAIALNRIAADASKI  426 (426)
Q Consensus       393 L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sgi  426 (426)
                      |.++++++++++|+++|+++|+||+++|+|+|||
T Consensus       345 L~~is~~ve~~~g~~v~~~kpiVG~~aFah~SGi  378 (644)
T 3hq1_A          345 IDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGS  378 (644)
T ss_dssp             HHHHHHHHHHHHSCCCCTTCTTTSTTTTEECCHH
T ss_pred             HHHHHHHHHHHhCCCCCCCcccccccceeecccc
Confidence            9999999999999999999999999999999997

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=100.00  E-value=2.6e-61  Score=476.81  Aligned_cols=272  Identities=21%  Similarity=0.258  Sum_probs=238.3

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC-
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-  203 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~-  203 (426)
                      ++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|||.+.   |  .|.+.+.+..+..+++++++|+|+ 
T Consensus         4 ~~v~I~DttlRDG~Q~~~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~~~~   78 (293)
T 3ewb_X            4 KKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISS---P--GDFECVKAIAKAIKHCSVTGLARCV   78 (293)
T ss_dssp             EEEEEEECTTTCCC-----CCCHHHHHHHHHHHHHHTCSEEEEECGGGC---H--HHHHHHHHHHHHCCSSEEEEEEESS
T ss_pred             CeeEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---c--cHHHHHHHHHHhcCCCEEEEEecCC
Confidence            4699999999999999999999999999999999999999999997642   2  344555555556789999999986 


Q ss_pred             hhhHHHHHH----cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 LKGFEAAIA----AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ~~di~~a~~----~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                      .+|++++++    +|++.|++|+++||.|+++|+|+|++++++++.+++++||++|+.|+      |+++++++++++++
T Consensus        79 ~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~------~~~~d~~~~~~~~~  152 (293)
T 3ewb_X           79 EGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQ------FSPEDATRSDRAFL  152 (293)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE------EEEETGGGSCHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEE------EEeccCCCCCHHHH
Confidence            579999887    59999999999999999999999999999999999999999999988      44567889999999


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      .++++++.++|+++|+|+||+|+++|.+++++++.+++++|.   ++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       153 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~G  232 (293)
T 3ewb_X          153 IEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTING  232 (293)
T ss_dssp             HHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGG
T ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccc
Confidence            999999999999999999999999999999999999999984   57999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHh----CCCCCCcChhhHHHHHHHHHHHhCCCCCCCCc
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPSGSKTA  413 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~~----lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~p  413 (426)
                      |||      |+||++||+|+++|+.    +|++|++|+++|.++++++++++|+++|+++.
T Consensus       233 lGe------raGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~~  287 (293)
T 3ewb_X          233 IGE------RAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRNEG  287 (293)
T ss_dssp             CCT------TTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC----------
T ss_pred             ccc------ccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999      9999999999999985    69999999999999999999999999999864

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=100.00  E-value=5.4e-53  Score=425.87  Aligned_cols=269  Identities=23%  Similarity=0.300  Sum_probs=241.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEe----cCC-CCCccccccCHHHHHHHhH-hcCCCc
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT----SFV-SPKWVPQLADARDVMEAVR-DLEGAR  196 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG----~~~-s~~~~p~~~D~~~v~~~i~-~~~~~~  196 (426)
                      ..++|+|+|||||||+|+++..|++++|++|++.|+++|++.||+|    +|. +|++.|++.+.++.++.++ ..++++
T Consensus         5 ~~~~v~i~DttlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~   84 (345)
T 1nvm_A            5 PSKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQ   84 (345)
T ss_dssp             CCCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSE
T ss_pred             CCCCcEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCE
Confidence            4468999999999999999999999999999999999999999998    664 6788888888888887776 568899


Q ss_pred             EEEE-eC---ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC
Q 014369          197 LPVL-TP---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       197 l~~l-~~---~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~  272 (426)
                      +++| .|   +.+++++|.++|++.|+|++++|+.              +.+.+++++||++|+.++++++      +++
T Consensus        85 i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~------~a~  144 (345)
T 1nvm_A           85 IATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEA--------------DVSKQHIEYARNLGMDTVGFLM------MSH  144 (345)
T ss_dssp             EEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCG--------------GGGHHHHHHHHHHTCEEEEEEE------STT
T ss_pred             EEEEecCCcccHHHHHHHHhCCcCEEEEEEeccHH--------------HHHHHHHHHHHHCCCEEEEEEE------eCC
Confidence            9999 45   4789999999999999999998873              3467889999999999997765      456


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +++++++.++++.+.++|++.|+|+||+|.++|.++.++|+.+++++| .++|++|+|||+|||+||+++|+++||++||
T Consensus       145 ~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd  224 (345)
T 1nvm_A          145 MIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVD  224 (345)
T ss_dssp             SSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEE
Confidence            889999999999999999999999999999999999999999999996 7799999999999999999999999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHH-hCCCCCCCCcccchhhhh
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH-LGRPSGSKTAIALNRIAA  421 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~-~g~~~~~~~pivG~~vf~  421 (426)
                      +|++||||      |+||++||+|+++|+.+|+++++|+++|.++++++++. .+++    +++.+...+.
T Consensus       225 ~tv~GlG~------~aGN~~le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~~~~~----~~~~~~~~~~  285 (345)
T 1nvm_A          225 ASLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP----VRVDRETLGL  285 (345)
T ss_dssp             EBGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSC----CSCCHHHHHH
T ss_pred             ecchhccC------CccCcCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCC----CCCChHHHhe
Confidence            99999999      99999999999999999999999999999999999876 4443    3444555443

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=100.00  E-value=1.2e-53  Score=450.93  Aligned_cols=275  Identities=20%  Similarity=0.237  Sum_probs=250.8

Q ss_pred             CCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCC---C-CccccccCHHHHHHHhH-hcCCCcE
Q 014369          124 PRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVS---P-KWVPQLADARDVMEAVR-DLEGARL  197 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s---~-~~~p~~~D~~~v~~~i~-~~~~~~l  197 (426)
                      +++|+|+|||||||+|+.+. .|++++|++|++.|+++||+.||+|++++   + +++  ..|.+++++.++ .++++++
T Consensus        22 ~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl--~~d~~e~lr~l~~~~~~~~l   99 (539)
T 1rqb_A           22 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFL--NEDPWERLRTFRKLMPNSRL   99 (539)
T ss_dssp             SEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTS--CCCHHHHHHHHHHHCTTSCE
T ss_pred             CCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhcc--CCCHHHHHHHHHHhCCCCEE
Confidence            46799999999999999864 89999999999999999999999998643   1 121  257888888887 4689999


Q ss_pred             EEEeC--C------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEE
Q 014369          198 PVLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  263 (426)
Q Consensus       198 ~~l~~--~------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~  263 (426)
                      ++|+|  |            ..++++++++|++.|+||.++|+.              +++.+++++||++|+.|+++++
T Consensus       100 ~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~--------------~ni~~~i~~ak~~G~~v~~~i~  165 (539)
T 1rqb_A          100 QMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDP--------------RNMAHAMAAVKKAGKHAQGTIC  165 (539)
T ss_dssp             EEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence            99985  2            235789999999999999999994              4578999999999999999898


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHH
Q 014369          264 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       264 ~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +++    ..+++++++.++++++.++|+++|+|+||+|+++|.+++++|+.+++++| .++|++|+|||+|||+||+++|
T Consensus       166 ~~~----~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laA  241 (539)
T 1rqb_A          166 YTI----SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKA  241 (539)
T ss_dssp             CCC----STTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHH
T ss_pred             eee----CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHH
Confidence            765    45679999999999999999999999999999999999999999999997 6789999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcc-cchhhhh
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI-ALNRIAA  421 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pi-vG~~vf~  421 (426)
                      +++||++||+|++|+|+      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+...|...++ +|.++|.
T Consensus       242 veAGa~~VD~ti~g~Ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~~~~~~~v~~  315 (539)
T 1rqb_A          242 IEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFK  315 (539)
T ss_dssp             HHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHH
T ss_pred             HHhCCCEEEEeccccCC------CccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHhCCCcCCCCCccCCCceEE
Confidence            99999999999999999      9999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcc
Q 014369          422 DAS  424 (426)
Q Consensus       422 h~S  424 (426)
                      |++
T Consensus       316 he~  318 (539)
T 1rqb_A          316 SQI  318 (539)
T ss_dssp             HCC
T ss_pred             ecC
Confidence            985

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=100.00  E-value=6.7e-52  Score=431.78  Aligned_cols=273  Identities=19%  Similarity=0.248  Sum_probs=242.7

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCCeEEEecCCC---C-CccccccCHHHHHHHhH-hcCCCc
Q 014369          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVS---P-KWVPQLADARDVMEAVR-DLEGAR  196 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s---~-~~~p~~~D~~~v~~~i~-~~~~~~  196 (426)
                      -+++|+|+|||||||+|+.+. .|++++|++|++.|+++||+.||+|++++   + +++  ..|.++.++.++ .+++++
T Consensus         4 ~~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~--~~d~~e~l~~i~~~~~~~~   81 (464)
T 2nx9_A            4 AIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFL--GEDPWQRLRLLKQAMPNTP   81 (464)
T ss_dssp             CCCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTT--CCCHHHHHHHHHHHCSSSC
T ss_pred             CCCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhcc--CCCHHHHHHHHHHhCCCCe
Confidence            467899999999999999865 79999999999999999999999998543   1 122  257788888887 468999


Q ss_pred             EEEEeC--Ch------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          197 LPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       197 l~~l~~--~~------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      +++|+|  |.            .++++++++|++.|+||.++|+.              +++.+++++||++|+.|++++
T Consensus        82 l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~--------------~ni~~~i~~ak~~G~~v~~~i  147 (464)
T 2nx9_A           82 LQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDV--------------RNMQQALQAVKKMGAHAQGTL  147 (464)
T ss_dssp             EEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHH--------------HHHHHHHHHHHHCCCEEEEEE
Confidence            999985  22            35789999999999999999994              456789999999999999999


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH
Q 014369          263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       263 ~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +++++    .+++++++.++++++.++||++|+|+||+|+++|.+++++|+.++++++ ++|++|+|||+|||+||+++|
T Consensus       148 ~~~~~----~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laA  222 (464)
T 2nx9_A          148 CYTTS----PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-VELHLHCHSTAGLADMTLLKA  222 (464)
T ss_dssp             ECCCC----TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCC-SCEEEEECCTTSCHHHHHHHH
T ss_pred             EeeeC----CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHH
Confidence            87654    4678999999999999999999999999999999999999999999995 589999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhh
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAAD  422 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h  422 (426)
                      +++||++||+|++|+|+      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+...|...+.+|.+...+
T Consensus       223 v~AGa~~VD~ti~g~ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~~~g~~~~v~  296 (464)
T 2nx9_A          223 IEAGVDRVDTAISSMSG------TYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFEGMMKGSDARIL  296 (464)
T ss_dssp             HHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCCSCCSCCTHHH
T ss_pred             HHhCCCEEEEeccccCC------CCcCHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHhhcccccCCCcCCcCCeE
Confidence            99999999999999999      999999999999999999999999999999999999999987766666777554433

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=100.00  E-value=5.9e-52  Score=414.25  Aligned_cols=265  Identities=18%  Similarity=0.144  Sum_probs=228.9

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc----ccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV----PQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~----p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      +|+|+|||||||+|++++.|++++|++|+++|+++||++||+|+|++|++.    |++.+ +++++.+++.+++++++|+
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~-~e~l~~i~~~~~~~~~~L~   80 (320)
T 3dxi_A            2 SLKILDCTLRDGGYYTNWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTP-VSVLKHLRNISTKKIAIML   80 (320)
T ss_dssp             -CEEEECHHHHHGGGGTTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCC-HHHHHHHHHHCCSEEEEEE
T ss_pred             eEEEEECCcCccccCCCCcCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccCh-HHHHHHHhhccCCeEEEEe
Confidence            589999999999999999999999999999999999999999999988775    78775 6677777778999999999


Q ss_pred             CCh----hhHHH---HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC
Q 014369          202 PNL----KGFEA---AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       202 ~~~----~di~~---a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~  274 (426)
                      |+.    ++++.   +.++|++.|+++....              .++.+.+++++||++|++|++++++.  +|..   
T Consensus        81 r~~~~~~~dv~~~~~a~~~Gvd~~ri~~~~~--------------nle~~~~~v~~ak~~G~~v~~~~~~~--~~~~---  141 (320)
T 3dxi_A           81 NEKNTTPEDLNHLLLPIIGLVDMIRIAIDPQ--------------NIDRAIVLAKAIKTMGFEVGFNVMYM--SKWA---  141 (320)
T ss_dssp             EGGGCCGGGHHHHHGGGTTTCSEEEEEECGG--------------GHHHHHHHHHHHHTTTCEEEEEECCT--TTGG---
T ss_pred             cCCCCChhhHHHHHHhhhcCCCEEEEEecHH--------------HHHHHHHHHHHHHHCCCEEEEEEEeC--CCCC---
Confidence            762    35554   3568999999997532              27788899999999999999888752  3322   


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      +++++...+.+ .++|++.|+|+||+|+++|.++.++++.+++.+| .+|++|+|||+|||+||+++|+++||++||+|+
T Consensus       142 ~~~~~l~~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si  219 (320)
T 3dxi_A          142 EMNGFLSKLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATI  219 (320)
T ss_dssp             GSTTSGGGGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBG
T ss_pred             CHHHHHHHHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEec
Confidence            23333333333 3689999999999999999999999999999998 589999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhhccC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASK  425 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h~Sg  425 (426)
                      +|||+      |+||++||+|+++|+. ++.+++|+++|.++.++++++.      +++++|.++|.|+||
T Consensus       220 ~GlG~------~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~------~~~~~g~~~~~~~sg  277 (320)
T 3dxi_A          220 TGMGR------GAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLL------EKYQWGTNLPYMLSG  277 (320)
T ss_dssp             GGCSS------TTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHH------HHHCCSCCHHHHHHH
T ss_pred             cccCC------cccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHH------HhcCCCCchhhHHHh
Confidence            99999      9999999999999998 5667899999999999999986      678999999988886

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=100.00  E-value=3.2e-50  Score=437.43  Aligned_cols=282  Identities=17%  Similarity=0.144  Sum_probs=246.0

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCC--CCeEEEecCCCCC-cccc-ccCHHHHHHHhH-hcCCCc
Q 014369          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSG--LPVVEATSFVSPK-WVPQ-LADARDVMEAVR-DLEGAR  196 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~G--v~~IEvG~~~s~~-~~p~-~~D~~~v~~~i~-~~~~~~  196 (426)
                      .+++|+|+|||||||+|+.+. .|++++|++|++.|+++|  ++.||+|-.++.+ .+|. -.++++.++.++ .+++++
T Consensus        99 ~~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~  178 (718)
T 3bg3_A           99 NHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIP  178 (718)
T ss_dssp             HCCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSC
T ss_pred             ccCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccch
Confidence            456899999999999999976 599999999999999995  6669998111000 0010 135667666665 678999


Q ss_pred             EEEEeCC--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          197 LPVLTPN--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       197 l~~l~~~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      +++|+|.              ..++++|+++|++.|+||.++|+              +++++..+++++++|..+++++
T Consensus       179 l~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~--------------l~~l~~~i~~ak~~G~~v~~~i  244 (718)
T 3bg3_A          179 FQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNY--------------LPNMLLGMEAAGSAGGVVEAAI  244 (718)
T ss_dssp             EEEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCC--------------HHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHH--------------HHHHHHHHHHHHHcCCeEEEEE
Confidence            9998863              35789999999999999998876              4577889999999999999999


Q ss_pred             Eee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHH
Q 014369          263 SCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  340 (426)
Q Consensus       263 ~~~--fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaL  340 (426)
                      ++.  |.+|..+.++++++.++++++.++||++|+|+||+|+++|.+++++|+.+++++|+++|++|+|||+|||+||++
T Consensus       245 ~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANsl  324 (718)
T 3bg3_A          245 SYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAML  324 (718)
T ss_dssp             ECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHH
T ss_pred             EeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHH
Confidence            976  345544456999999999999999999999999999999999999999999999877999999999999999999


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCC--Ccccch-
Q 014369          341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK--TAIALN-  417 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~--~pivG~-  417 (426)
                      +|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+.+.|..  .+++|. 
T Consensus       325 aAveAGa~~VD~ti~GlGe------rtGN~~lE~vv~~L~~~g~~tgidl~~L~~~s~~v~~~~~~~~~~~~~~~~~g~~  398 (718)
T 3bg3_A          325 ACAQAGADVVDVAADSMSG------MTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGN  398 (718)
T ss_dssp             HHHHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCGGGTCCSCC
T ss_pred             HHHHhCCCEEEecCccccc------ccCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHhCCCcCCcCCccccccc
Confidence            9999999999999999999      9999999999999999999999999999999999999999999988  899987 


Q ss_pred             -hhhhhcc
Q 014369          418 -RIAADAS  424 (426)
Q Consensus       418 -~vf~h~S  424 (426)
                       ++|.|+.
T Consensus       399 ~~v~~~e~  406 (718)
T 3bg3_A          399 SDVYENEI  406 (718)
T ss_dssp             TTHHHHCC
T ss_pred             cceeeccC
Confidence             7788774

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=100.00  E-value=3.5e-46  Score=425.43  Aligned_cols=282  Identities=15%  Similarity=0.137  Sum_probs=242.7

Q ss_pred             HHhhcCCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHhCCCC--eEEEe----cCCCCCccccccCHHHHHHHh
Q 014369          117 NKFLKGIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLP--VVEAT----SFVSPKWVPQLADARDVMEAV  189 (426)
Q Consensus       117 ~~~~~~~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L~~~Gv~--~IEvG----~~~s~~~~p~~~D~~~v~~~i  189 (426)
                      ..++  .+++|+|+|||||||+|+++. .|++++|++|++.|+++|++  .||+|    |++.-.++  ..++++.++.+
T Consensus       543 ~~~~--~~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~--~~~p~e~l~~~  618 (1165)
T 2qf7_A          543 EWMR--NEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFL--TEDPWERLALI  618 (1165)
T ss_dssp             HHHH--HCSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHH--CCCHHHHHHHH
T ss_pred             HHhh--cCCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhc--CCCHHHHHHHH
Confidence            4443  456799999999999999986 69999999999999999655  59984    43210000  13567777666


Q ss_pred             H-hcCCCcEEEEeCC--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          190 R-DLEGARLPVLTPN--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       190 ~-~~~~~~l~~l~~~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                      + .++++++++|+|.              .+++++++++|++.|+||.++|+              +++++..+++++++
T Consensus       619 ~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i~~a~~~g~d~irif~sl~~--------------~~~~~~~i~~~~~~  684 (1165)
T 2qf7_A          619 REGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNW--------------VENMRVSMDAIAEE  684 (1165)
T ss_dssp             HHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHHTCCEEEEECTTCC--------------GGGGHHHHHHHHHT
T ss_pred             HHHchhhHHHHHhccccccccccCCchhHHHHHHHHHhcCcCEEEEEeeHHH--------------HHHHHHHHHHHHhc
Confidence            5 6789999999752              25799999999999999998765              45677899999999


Q ss_pred             CCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc
Q 014369          255 SIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  332 (426)
Q Consensus       255 G~~v~~~v~~~--fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~  332 (426)
                      |..+++++++.  |.+|..+.++++++.++++++.++||++|+|+||+|+++|.+++++|+.++++++ ++|++|+|||+
T Consensus       685 g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hnd~  763 (1165)
T 2qf7_A          685 NKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATG-LPIHFHTHDTS  763 (1165)
T ss_dssp             TCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCS-SCEEEEECBTT
T ss_pred             cceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCC
Confidence            99999999876  3444434489999999999999999999999999999999999999999999994 58999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCC
Q 014369          333 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKT  412 (426)
Q Consensus       333 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~  412 (426)
                      |||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+...|...
T Consensus       764 GlAvAn~laAv~aGa~~vd~ti~GlGe------~~Gn~~le~vv~~L~~~g~~tgidl~~L~~~s~~~~~~~~~~~~~~~  837 (1165)
T 2qf7_A          764 GIAAATVLAAVEAGVDAVDAAMDALSG------NTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFES  837 (1165)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHGGGGGGCC
T ss_pred             CHHHHHHHHHHHhCCCEEEecccccCC------CccchhHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhhccCCCC
Confidence            999999999999999999999999999      99999999999999999999999999999999999999998877777


Q ss_pred             cccc--hhhhhhc
Q 014369          413 AIAL--NRIAADA  423 (426)
Q Consensus       413 pivG--~~vf~h~  423 (426)
                      +++|  .++|.|+
T Consensus       838 ~~~~~~~~v~~~~  850 (1165)
T 2qf7_A          838 DLKGPASEVYLHE  850 (1165)
T ss_dssp             CCCSCCTTHHHHC
T ss_pred             CccCCccceEecc
Confidence            7888  4567665

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=100.00  E-value=4.1e-45  Score=415.94  Aligned_cols=287  Identities=16%  Similarity=0.163  Sum_probs=249.3

Q ss_pred             hHHHHhhcCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHhC--CCCeEEEecCCC-CCccccc-cCHHHHHHH
Q 014369          114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEATSFVS-PKWVPQL-ADARDVMEA  188 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~-f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s-~~~~p~~-~D~~~v~~~  188 (426)
                      ++++.++  ..++|+|+|||||||+|+++.. |++++|++|++.|+++  |+..||++.... .-.+|.+ .|+++.++.
T Consensus       522 ~~~~~~~--~~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~  599 (1150)
T 3hbl_A          522 GVAEWVK--KQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLER  599 (1150)
T ss_dssp             HHHHHHT--TCSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHH
T ss_pred             HHHHHHH--hCCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHH
Confidence            5666664  4577999999999999999885 9999999999999999  999999952111 0113444 578888888


Q ss_pred             hH-hcCCCcEEEEeCC--------------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 014369          189 VR-DLEGARLPVLTPN--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  253 (426)
Q Consensus       189 i~-~~~~~~l~~l~~~--------------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~  253 (426)
                      ++ .++++++++|+|.              .+++++|+++|++.||+|+++|+.|+.              ..+++.+++
T Consensus       600 l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~~~--------------~~~~~~~~e  665 (1150)
T 3hbl_A          600 LRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQM--------------KVANEAVQE  665 (1150)
T ss_dssp             HHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGGGG--------------HHHHHHHHH
T ss_pred             HHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHHHH--------------HHHHHHHHH
Confidence            87 5789999999853              246899999999999999999997664              356677788


Q ss_pred             cCCcEEEEEEee---ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369          254 LSIPVRGYVSCV---VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  330 (426)
Q Consensus       254 ~G~~v~~~v~~~---fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN  330 (426)
                      .|..+++.+++.   ++.+++++++++++.++++++.++|+++|+|+||+|+++|.+++++|+.+++++ +++|++|+||
T Consensus       666 ~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hn  744 (1150)
T 3hbl_A          666 AGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHD  744 (1150)
T ss_dssp             TTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECB
T ss_pred             HhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence            899999999988   666667889999999999999999999999999999999999999999999997 4689999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCC
Q 014369          331 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS  410 (426)
Q Consensus       331 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~  410 (426)
                      |+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+.-.+.
T Consensus       745 t~G~a~An~laA~~aGa~~vD~ai~GlG~------~~gn~~lE~lv~~L~~~g~~tgidl~~l~~~~~~~~~~~~~y~~~  818 (1150)
T 3hbl_A          745 TSGNGLLTYKQAIDAGVDIIDTAVASMSG------LTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDF  818 (1150)
T ss_dssp             TTSCHHHHHHHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGGGG
T ss_pred             CCcHHHHHHHHHHHhCCCEEEEeccccCC------CCCCccHHHHHHHHHhcCCCcCccHHHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999999999999999      999999999999999999999999999999999999998876655


Q ss_pred             CCcccc--hhhhhhc
Q 014369          411 KTAIAL--NRIAADA  423 (426)
Q Consensus       411 ~~pivG--~~vf~h~  423 (426)
                      ..++.|  .+|+.|+
T Consensus       819 ~~~~~~~~~~v~~~~  833 (1150)
T 3hbl_A          819 ESDIKSPNTEIYQHE  833 (1150)
T ss_dssp             CCSCCSCCTTHHHHC
T ss_pred             cCCCCCCccceEEee
Confidence            555555  3577775

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.81  E-value=7.5e-08  Score=93.01  Aligned_cols=177  Identities=12%  Similarity=0.138  Sum_probs=113.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--ccccc-----------CHH---HHHHHhHh-cCCCcEEEEeC-C--
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VPQLA-----------DAR---DVMEAVRD-LEGARLPVLTP-N--  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p~~~-----------D~~---~v~~~i~~-~~~~~l~~l~~-~--  203 (426)
                      ..+.+.++++++.|.+.|+|.||+|.|.+.+.  .|...           ..+   ++.+.+++ .|++.+..+.. |  
T Consensus        27 ~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v  106 (262)
T 2ekc_A           27 YPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPI  106 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHH
Confidence            46778999999999999999999998764321  01100           112   22333342 23666666642 3  


Q ss_pred             -----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          204 -----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       204 -----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                           .+.++.+.++|++.+.+..-            .    ++.+.+.++.++++|+.+.. +    ..|   .++++.
T Consensus       107 ~~~g~~~f~~~~~~aG~dgvii~dl------------~----~ee~~~~~~~~~~~gl~~i~-l----~~p---~t~~~r  162 (262)
T 2ekc_A          107 FRIGLEKFCRLSREKGIDGFIVPDL------------P----PEEAEELKAVMKKYVLSFVP-L----GAP---TSTRKR  162 (262)
T ss_dssp             HHHCHHHHHHHHHHTTCCEEECTTC------------C----HHHHHHHHHHHHHTTCEECC-E----ECT---TCCHHH
T ss_pred             HHhhHHHHHHHHHHcCCCEEEECCC------------C----HHHHHHHHHHHHHcCCcEEE-E----eCC---CCCHHH
Confidence                 24578889999998777421            1    24567888899999987531 1    123   256677


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHH---HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGT---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~---v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +.++++....+ +..+.+.+++|..+|..   +.++++.+++... .+|.+    .+|...++.++++.+|||.|
T Consensus       163 l~~ia~~a~gf-iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~-~pv~v----G~GI~t~e~~~~~~~gADgv  231 (262)
T 2ekc_A          163 IKLICEAADEM-TYFVSVTGTTGAREKLPYERIKKKVEEYRELCD-KPVVV----GFGVSKKEHAREIGSFADGV  231 (262)
T ss_dssp             HHHHHHHCSSC-EEEESSCC---------CHHHHHHHHHHHHHCC-SCEEE----ESSCCSHHHHHHHHTTSSEE
T ss_pred             HHHHHHhCCCC-EEEEecCCccCCCCCcCcccHHHHHHHHHhhcC-CCEEE----eCCCCCHHHHHHHHcCCCEE
Confidence            77777654322 45566679999998854   8899999999763 46776    88999899999999999865

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=98.62  E-value=1.9e-06  Score=85.72  Aligned_cols=228  Identities=13%  Similarity=0.126  Sum_probs=150.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC---ChhhHHHHHHcCCCEEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---~~~di~~a~~~Gv~~V~i  220 (426)
                      .++.++.++.++.+.+.|++.|-++....|.+.+...+..++++.++...++.+. +.+   +.+.++...++|++.+.+
T Consensus        90 ~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~-~s~g~~~~e~l~~L~~aG~~~i~i  168 (350)
T 3t7v_A           90 RLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIM-ISPGLMDNATLLKAREKGANFLAL  168 (350)
T ss_dssp             BCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEE-EECSSCCHHHHHHHHHTTEEEEEC
T ss_pred             eCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEE-EeCCCCCHHHHHHHHHcCCCEEEE
Confidence            4799999999999999999988875433332110111223444444422244443 233   457789999999998887


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----  296 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----  296 (426)
                      .+-..+......++..  ...+...++++.+++.|+++...++  +|. .   -+++.+.+.++.+.+++++.+.+    
T Consensus       169 ~lEt~~~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i--~Gl-g---et~e~~~~~l~~l~~l~~~~v~~~~f~  240 (350)
T 3t7v_A          169 YQETYDTELYRKLRVG--QSFDGRVNARRFAKQQGYCVEDGIL--TGV-G---NDIESTILSLRGMSTNDPDMVRVMTFL  240 (350)
T ss_dssp             CCBCSCHHHHHHHSTT--CCHHHHHHHHHHHHHHTCEEEEEEE--ESS-S---CCHHHHHHHHHHHHHTCCSEEEEEECC
T ss_pred             eeecCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeEccceE--eec-C---CCHHHHHHHHHHHHhCCCCEEEeccee
Confidence            7654422222233221  2244555778889999999877666  443 1   35788889999999999987765    


Q ss_pred             --cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCC---
Q 014369          297 --GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGAS---  367 (426)
Q Consensus       297 --~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gra---  367 (426)
                        ++|-    ...++.++.++++..|-.+|...|-.-.+   .++......|+.+||+-+.+++..--   .+.|..   
T Consensus       241 p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~---~~g~~~~~~~l~~Gan~~~~~~~~~~---~~ag~~~~~  314 (350)
T 3t7v_A          241 PQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLD---LEGIDGMVLRLNAGANIVTSILPPDS---QLEGVANYD  314 (350)
T ss_dssp             CCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHH---HHHHHHHHHHHHTTCCEEEEECCSSC---CCCCSSCTT
T ss_pred             eCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCcccccc---ccChhHHHHHHhcCCceecCCCCCCC---CCCCCCCCc
Confidence              2431    22456788899999888888654444322   34456788999999999999987651   222211   


Q ss_pred             -----CcccHHHHHHHHHhCCCCC
Q 014369          368 -----GNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       368 -----GNa~lEevv~~L~~lG~~~  386 (426)
                           ++.+.++++..++..|+.+
T Consensus       315 ~~~~~~~~~~~~~~~~i~~~G~~~  338 (350)
T 3t7v_A          315 RDLEERDRDIKSVVRRLEIMGMKP  338 (350)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHTCEE
T ss_pred             ccchhccCCHHHHHHHHHHcCCcc
Confidence                 3578999999999988763

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.45  E-value=1.8e-06  Score=84.01  Aligned_cols=176  Identities=16%  Similarity=0.158  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--ccccc-----------CHHHHHHHhH---hc-CCCcEEEEeC-C---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VPQLA-----------DARDVMEAVR---DL-EGARLPVLTP-N---  203 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p~~~-----------D~~~v~~~i~---~~-~~~~l~~l~~-~---  203 (426)
                      -+.+.-+++++.|.+.|+|.||+|.|-+.+.  .|...           ..+.+++.++   .. +++.+..++. |   
T Consensus        31 P~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~  110 (271)
T 3nav_A           31 PNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVY  110 (271)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHH
Confidence            4678889999999999999999998754321  12110           1223444444   22 5667766763 3   


Q ss_pred             ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          .+-++.+.++|++.+.+..-            .    ++...+..++++++|+.+.. ++    .|   .++++.+
T Consensus       111 ~~g~~~f~~~~~~aGvdGvIipDl------------p----~ee~~~~~~~~~~~gl~~I~-lv----ap---~t~~eri  166 (271)
T 3nav_A          111 ARGIDDFYQRCQKAGVDSVLIADV------------P----TNESQPFVAAAEKFGIQPIF-IA----PP---TASDETL  166 (271)
T ss_dssp             HTCHHHHHHHHHHHTCCEEEETTS------------C----GGGCHHHHHHHHHTTCEEEE-EE----CT---TCCHHHH
T ss_pred             HHhHHHHHHHHHHCCCCEEEECCC------------C----HHHHHHHHHHHHHcCCeEEE-EE----CC---CCCHHHH
Confidence                13467888999999888521            1    12356788899999998542 21    12   3456666


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH-HHHcCCCEE
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTV  350 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa-Al~aGa~~V  350 (426)
                      .++++..... +..+.+.+++|...  |..+.++++.+|+... .|+.+    .+|........ ++.+||+.|
T Consensus       167 ~~i~~~~~gf-iY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v----GfGIst~e~~~~~~~~gADgv  234 (271)
T 3nav_A          167 RAVAQLGKGY-TYLLSRAGVTGAETKANMPVHALLERLQQFDA-PPALL----GFGISEPAQVKQAIEAGAAGA  234 (271)
T ss_dssp             HHHHHHCCSC-EEECCCC--------CCHHHHHHHHHHHHTTC-CCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHCCCe-EEEEeccCCCCcccCCchhHHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence            6666542212 34445678888763  7789999999998764 45666    67777777777 999999966

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.40  E-value=2e-06  Score=83.51  Aligned_cols=177  Identities=18%  Similarity=0.214  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc--c--cc---------cCHHHHHHH---hHhc-CCCcEEEEeC-Ch-
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV--P--QL---------ADARDVMEA---VRDL-EGARLPVLTP-NL-  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~--p--~~---------~D~~~v~~~---i~~~-~~~~l~~l~~-~~-  204 (426)
                      ..+.+.-+++++.|.+.|+|.||+|.|-+.+..  |  |.         .+.+.+++.   +|.. .++.+..++. |. 
T Consensus        28 dP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv  107 (267)
T 3vnd_A           28 DPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLV  107 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH
Confidence            456788899999999999999999987543211  1  10         011233333   4432 4566666664 42 


Q ss_pred             ------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          205 ------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       205 ------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                            +-++.+.++|++.+.+..-.                ++...+.+++++++|+.+..-+     .|   .++++.
T Consensus       108 ~~~g~e~f~~~~~~aGvdgvii~Dlp----------------~ee~~~~~~~~~~~gl~~i~li-----aP---~t~~er  163 (267)
T 3vnd_A          108 FANGIDEFYTKAQAAGVDSVLIADVP----------------VEESAPFSKAAKAHGIAPIFIA-----PP---NADADT  163 (267)
T ss_dssp             HHHCHHHHHHHHHHHTCCEEEETTSC----------------GGGCHHHHHHHHHTTCEEECEE-----CT---TCCHHH
T ss_pred             HHhhHHHHHHHHHHcCCCEEEeCCCC----------------HhhHHHHHHHHHHcCCeEEEEE-----CC---CCCHHH
Confidence                  34678889999998885321                1235678889999999864211     12   345666


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH-HHHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa-Al~aGa~~V  350 (426)
                      +..+++..... +..+++..++|...  |..+.++++.+|+... .++.+    .+|........ ++.+|||.|
T Consensus       164 i~~i~~~~~gf-vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~-~pv~v----GfGI~~~e~~~~~~~~gADgv  232 (267)
T 3vnd_A          164 LKMVSEQGEGY-TYLLSRAGVTGTESKAGEPIENILTQLAEFNA-PPPLL----GFGIAEPEQVRAAIKAGAAGA  232 (267)
T ss_dssp             HHHHHHHCCSC-EEESCCCCCC--------CHHHHHHHHHTTTC-CCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHhCCCc-EEEEecCCCCCCccCCcHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHHcCCCEE
Confidence            66655432111 33444577777763  6778999999998764 45666    77887677777 999999966

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.32  E-value=4.5e-06  Score=80.64  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=113.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-----ccc-----------ccCHHHHHHHhHhc-CCCcEEEEe-CC--
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQ-----------LADARDVMEAVRDL-EGARLPVLT-PN--  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-----~p~-----------~~D~~~v~~~i~~~-~~~~l~~l~-~~--  203 (426)
                      .++.+..+++++.|.+.|+|.||+|.|.+.+.     +++           +....++++.+++. .++.+..+. .|  
T Consensus        27 dp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v  106 (268)
T 1qop_A           27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLV  106 (268)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHH
Confidence            56778999999999999999999998764321     110           00111334445544 456665554 23  


Q ss_pred             -----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          204 -----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       204 -----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                           .+.++.+.++|++.+.+..-.                .+.+.+.++.++++|+++.. +    ..|.   ++.+.
T Consensus       107 ~~~g~~~~~~~~~~aGadgii~~d~~----------------~e~~~~~~~~~~~~g~~~i~-l----~~p~---t~~~~  162 (268)
T 1qop_A          107 FNNGIDAFYARCEQVGVDSVLVADVP----------------VEESAPFRQAALRHNIAPIF-I----CPPN---ADDDL  162 (268)
T ss_dssp             HTTCHHHHHHHHHHHTCCEEEETTCC----------------GGGCHHHHHHHHHTTCEEEC-E----ECTT---CCHHH
T ss_pred             HHhhHHHHHHHHHHcCCCEEEEcCCC----------------HHHHHHHHHHHHHcCCcEEE-E----ECCC---CCHHH
Confidence                 356788999999987775221                13355778889999987642 1    1232   45677


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH-HHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA-l~aGa~~V  350 (426)
                      +.++++....+ +..+.+..+.|..+|  ..+.++++.+++... .+|.+    +.|...++.+.. +.+|||.|
T Consensus       163 i~~i~~~~~g~-v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~-~pi~v----ggGI~t~e~~~~~~~agAD~v  231 (268)
T 1qop_A          163 LRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYHA-APALQ----GFGISSPEQVSAAVRAGAAGA  231 (268)
T ss_dssp             HHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTTC-CCEEE----ESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHhhCCCc-EEEEecCCcCCCccCCCchHHHHHHHHHhccC-CcEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence            77766543222 334455578888544  557788899888653 45766    788885555555 99999966

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.14  E-value=5.8e-06  Score=76.15  Aligned_cols=168  Identities=14%  Similarity=0.138  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE---EeCChhh-HHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV---LTPNLKG-FEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~---l~~~~~d-i~~a~~~Gv~~V~  219 (426)
                      .+.++.+++++.|. -|++.||+|+|.+      +....++++.+++. ++..+.+   +.+..+. ++.+.++|++.|.
T Consensus        10 ~~~~~~~~~~~~~~-~~~diie~G~p~~------~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~   82 (211)
T 3f4w_A           10 LTLPEAMVFMDKVV-DDVDIIEVGTPFL------IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVT   82 (211)
T ss_dssp             CCHHHHHHHHHHHG-GGCSEEEECHHHH------HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhh-cCccEEEeCcHHH------HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEE
Confidence            46788899999996 6999999997421      11112456666654 5666543   2233444 8999999999999


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      +.....+               +.+.+++++++++|+++.+.+.    +|    .++   .+.++.+.++|++.|++.  
T Consensus        83 v~~~~~~---------------~~~~~~~~~~~~~g~~~~v~~~----~~----~t~---~~~~~~~~~~g~d~i~v~--  134 (211)
T 3f4w_A           83 VLGVTDV---------------LTIQSCIRAAKEAGKQVVVDMI----CV----DDL---PARVRLLEEAGADMLAVH--  134 (211)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHHTCEEEEECT----TC----SSH---HHHHHHHHHHTCCEEEEE--
T ss_pred             EeCCCCh---------------hHHHHHHHHHHHcCCeEEEEec----CC----CCH---HHHHHHHHHcCCCEEEEc--
Confidence            8754321               2345778888999987753211    11    222   345667778999998873  


Q ss_pred             CCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          300 IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       300 ~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .|.   ..+....+.++.+++.++..++.+    +.|....|+..++++||+.|=
T Consensus       135 ~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~----~gGI~~~~~~~~~~~Gad~vv  185 (211)
T 3f4w_A          135 TGTDQQAAGRKPIDDLITMLKVRRKARIAV----AGGISSQTVKDYALLGPDVVI  185 (211)
T ss_dssp             CCHHHHHTTCCSHHHHHHHHHHCSSCEEEE----ESSCCTTTHHHHHTTCCSEEE
T ss_pred             CCCcccccCCCCHHHHHHHHHHcCCCcEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence            231   111113467778888776556665    456666788889999999763

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.03  E-value=0.0001  Score=70.42  Aligned_cols=175  Identities=17%  Similarity=0.169  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc-----ccc--------ccCHH---HHHHHhHhcCCCcEEEEe-CCh--
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQ--------LADAR---DVMEAVRDLEGARLPVLT-PNL--  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~-----~p~--------~~D~~---~v~~~i~~~~~~~l~~l~-~~~--  204 (426)
                      .++.+..+++++.|.+.|++.||+|.|.+.+.     ++.        -.+..   ++.+.+++..++.+..+. .|.  
T Consensus        28 ~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~  107 (262)
T 1rd5_A           28 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM  107 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHH
Confidence            34568889999999999999999997654211     110        01223   333444443455555554 332  


Q ss_pred             -hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          205 -KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       205 -~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                       .+++.+.++|++.|.+..-.                ++.+.++++.++++|+++...+     .|   .++.+.+..+.
T Consensus       108 ~~~~~~a~~aGadgv~v~d~~----------------~~~~~~~~~~~~~~g~~~i~~~-----a~---~t~~e~~~~~~  163 (262)
T 1rd5_A          108 FRSLAKMKEAGVHGLIVPDLP----------------YVAAHSLWSEAKNNNLELVLLT-----TP---AIPEDRMKEIT  163 (262)
T ss_dssp             SCCTHHHHHTTCCEEECTTCB----------------TTTHHHHHHHHHHTTCEECEEE-----CT---TSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCC----------------hhhHHHHHHHHHHcCCceEEEE-----CC---CCCHHHHHHHH
Confidence             35677999999988874211                1235677788999998754222     12   24455555544


Q ss_pred             HHHHhCCCCEEE---EcCCCCC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEe
Q 014369          284 KELHDMGCFEIS---LGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVD  351 (426)
Q Consensus       284 ~~l~~~Gad~I~---l~DT~G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD  351 (426)
                      +    .+.+.++   +..+.|.  ..+....++++.+++..+ .+|.+    +.|.. ..|+.+.+++||+.|-
T Consensus       164 ~----~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~-~pI~v----gGGI~~~e~~~~~~~~GAdgvv  228 (262)
T 1rd5_A          164 K----ASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTN-KPVAV----GFGISKPEHVKQIAQWGADGVI  228 (262)
T ss_dssp             H----HCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCS-SCEEE----ESCCCSHHHHHHHHHTTCSEEE
T ss_pred             h----cCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcC-CeEEE----ECCcCCHHHHHHHHHcCCCEEE
Confidence            3    2333333   3444565  344667788999988764 35666    78888 6777777888999774

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=98.01  E-value=0.00037  Score=68.62  Aligned_cols=230  Identities=16%  Similarity=0.101  Sum_probs=140.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC---ChhhHHHHHHcCCCEEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---~~~di~~a~~~Gv~~V~i  220 (426)
                      .++.++.++.++.+.+.|+..|-++..-.|. ++ ..+..++++.++.. +..+. +..   +.+.++...++|++.+.+
T Consensus        83 ~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~-~~-~~~~~~li~~i~~~-~~~i~-~s~g~l~~e~l~~L~~ag~~~v~i  158 (348)
T 3iix_A           83 RMTPEEIVERARLAVQFGAKTIVLQSGEDPY-XM-PDVISDIVKEIKKM-GVAVT-LSLGEWPREYYEKWKEAGADRYLL  158 (348)
T ss_dssp             BCCHHHHHHHHHHHHHTTCSEEEEEESCCGG-GT-THHHHHHHHHHHTT-SCEEE-EECCCCCHHHHHHHHHHTCCEEEC
T ss_pred             eCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-cc-HHHHHHHHHHHHhc-CceEE-EecCCCCHHHHHHHHHhCCCEEee
Confidence            4799999999999999999988876432121 10 11223344444433 44444 222   467788899999999988


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----  296 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----  296 (426)
                      .+-..+.-....++...  ..++..+.++.+++.|+.+.+.++  +|.|..   +++.+.+.++.+.++|++.+.+    
T Consensus       159 ~let~~~~~~~~i~~~~--~~~~~~~~i~~~~~~Gi~v~~~~i--~G~p~e---t~e~~~~~~~~l~~l~~~~i~i~~~~  231 (348)
T 3iix_A          159 RHETANPVLHRKLRPDT--SFENRLNCLLTLKELGYETGAGSM--VGLPGQ---TIDDLVDDLLFLKEHDFDMVGIGPFI  231 (348)
T ss_dssp             CCBCSCHHHHHHHSTTS--CHHHHHHHHHHHHHTTCEEEECBE--ESCTTC---CHHHHHHHHHHHHHHTCSEECCEECC
T ss_pred             eeeeCCHHHHHHhCCCc--CHHHHHHHHHHHHHhCCeeccceE--EeCCCC---CHHHHHHHHHHHHhcCCCEEeeeeee
Confidence            76554222222232211  455566778889999998775554  565543   5788888888888888876543    


Q ss_pred             --cCCC----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC---cHHHHHHHHHHcCCCEEeec--ccCCCCCCCC--
Q 014369          297 --GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG---QSLPNILISLQMGISTVDCS--VAGLGGCPYA--  363 (426)
Q Consensus       297 --~DT~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G---lA~ANaLaAl~aGa~~VD~S--v~GlGecP~a--  363 (426)
                        ++|-    ...++.++.++++.+|..+|...|-    ..-+   ++......|+.+||+.|-..  ..++-+ .|.  
T Consensus       232 p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~----~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~-~~~~~  306 (348)
T 3iix_A          232 PHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIP----ATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQ-LYQLY  306 (348)
T ss_dssp             CCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCB----CCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGG-GCCSS
T ss_pred             cCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCch----hcchhhhcCHHHHHHHHhcCCcEEeCCCCchhccc-ccccC
Confidence              3432    2346788899999998888864222    1111   11233567899999988633  233211 010  


Q ss_pred             -----CCCCCcccHHHHHHHHHhCCCCCCcC
Q 014369          364 -----KGASGNVATEDVVYMLSGLGVETNVD  389 (426)
Q Consensus       364 -----~graGNa~lEevv~~L~~lG~~~~iD  389 (426)
                           .+..-....++++..++..|..+.++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  337 (348)
T 3iix_A          307 PGKICVFEKDTACIPCVMKMIELLGRKPGRD  337 (348)
T ss_dssp             SCCTTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred             CCCcccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence                 01112345778888888777765543

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=97.77  E-value=0.006  Score=60.88  Aligned_cols=218  Identities=13%  Similarity=0.063  Sum_probs=140.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhc--CCCcEEEEeC---ChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDL--EGARLPVLTP---NLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~---~~~di~~a~~~Gv~~  217 (426)
                      .++.++.++.++.+.+.|++.|-++... .|.    ..+.+.+.+.++.+  .+..+. +.+   +.+.++...++|++.
T Consensus        98 ~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~----~~~~~~l~~ll~~ik~~g~~i~-~t~G~l~~e~l~~L~~aGvd~  172 (369)
T 1r30_A           98 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLEAC-MTLGTLSESQAQRLANAGLDY  172 (369)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC----TTTHHHHHHHHHHHHHTTSEEE-EECSSCCHHHHHHHHHHCCCE
T ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCC----cCCHHHHHHHHHHHHHcCCeEE-EecCCCCHHHHHHHHHCCCCE
Confidence            4789999999999999999998885421 121    12334444444432  245554 343   356788888999999


Q ss_pred             EEEeccCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEE
Q 014369          218 VAIFASASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEI  294 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G--ad~I  294 (426)
                      +.+.+..++-..+..-+ .+    ++++.+.++.+++.|+.+.+.++  +|.    --+.+.+.+.++.+.+++  ++.|
T Consensus       173 v~i~les~~e~~~~i~~~~~----~~~~l~~i~~a~~~Gi~v~~~~I--~Gl----~et~ed~~~~l~~l~~l~~~~~~i  242 (369)
T 1r30_A          173 YNHNLDTSPEFYGNIITTRT----YQERLDTLEKVRDAGIKVCSGGI--VGL----GETVKDRAGLLLQLANLPTPPESV  242 (369)
T ss_dssp             EECCCBSCHHHHHHHCCSSC----HHHHHHHHHHHHHHHCEEECCEE--ECS----SCCHHHHHHHHHHHHSSSSCCSEE
T ss_pred             EeecCcCCHHHHHHhCCCCC----HHHHHHHHHHHHHcCCeeeeeeE--eeC----CCCHHHHHHHHHHHHhhcCCCCEE
Confidence            99988776544433322 24    34555677788888998775554  443    135788889999999998  7776


Q ss_pred             EE------cCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc-CcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          295 SL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       295 ~l------~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~-GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      .+      ++|    .....+.+..++++..+..+|..  .+|.=.-+ .++-.....++.+||+.+   +.  |+ .| 
T Consensus       243 ~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~--~i~i~~~~~~l~~~~~~~~l~~Gan~~---~~--g~-~~-  313 (369)
T 1r30_A          243 PINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTS--YVRLSAGREQMNEQTQAMCFMAGANSI---FY--GC-KL-  313 (369)
T ss_dssp             EEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTS--EEEEESSGGGSCHHHHHHHHHHTCCEE---EC--SS-BS-
T ss_pred             EeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCC--ceEeecchhhcChHHHHHHhhCCCceE---Ee--CC-ee-
Confidence            64      344    12346788899999999888863  33322110 122334566899999943   22  22 00 


Q ss_pred             CCCCCcccHHHHHHHHHhCCCCC
Q 014369          364 KGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       364 ~graGNa~lEevv~~L~~lG~~~  386 (426)
                       -.++|...++.+.+++.+|..+
T Consensus       314 -~t~~~~~~~~~~~~i~~~g~~~  335 (369)
T 1r30_A          314 -LTTPNPEEDKDLQLFRKLGLNP  335 (369)
T ss_dssp             -SSSBCCCHHHHHHHHHHTTCCS
T ss_pred             -eCCCCCCHHHHHHHHHHcCCCe
Confidence             0246788999999999988764

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=97.77  E-value=0.00016  Score=69.55  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHhcC-CCcEEEEeC-Ch----
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRDLE-GARLPVLTP-NL----  204 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~~~-~~~l~~l~~-~~----  204 (426)
                      .-+.+.-+++++.|.+.|+|.||+|+|-+.+.  .|  |-         .+.+.+++.++++. .+.+..|+. |.    
T Consensus        24 ~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~  103 (252)
T 3tha_A           24 YPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSY  103 (252)
T ss_dssp             SSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHh
Confidence            34678889999999999999999998764321  12  10         13356666666543 355555653 42    


Q ss_pred             ---hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          205 ---KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       205 ---~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                         +-++.+.++|++.+-+..-.                ++...+..+.++++|+.... +.    .|   .++++.+.+
T Consensus       104 G~e~F~~~~~~aGvdG~IipDLP----------------~eE~~~~~~~~~~~Gl~~I~-lv----aP---~t~~eRi~~  159 (252)
T 3tha_A          104 GLEKFVKKAKSLGICALIVPELS----------------FEESDDLIKECERYNIALIT-LV----SV---TTPKERVKK  159 (252)
T ss_dssp             CHHHHHHHHHHTTEEEEECTTCC----------------GGGCHHHHHHHHHTTCEECE-EE----ET---TSCHHHHHH
T ss_pred             hHHHHHHHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEE-Ee----CC---CCcHHHHHH
Confidence               23567889999988876321                12345777889999998642 21    12   234566555


Q ss_pred             HHHHHHhCCCCEEEEc---CCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          282 VAKELHDMGCFEISLG---DTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~---DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ++    +.+-.-||+.   .+.|...+  ..+.++++.+|+... .++.+    -+|.......+++..+||.|
T Consensus       160 ia----~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v----GfGIst~e~a~~~~~~ADGV  224 (252)
T 3tha_A          160 LV----KHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTN-LPIFV----GFGIQNNQDVKRMRKVADGV  224 (252)
T ss_dssp             HH----TTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCC-SCEEE----ESSCCSHHHHHHHTTTSSEE
T ss_pred             HH----HhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcC-CcEEE----EcCcCCHHHHHHHHhcCCEE
Confidence            54    3433334554   45666543  467899999998754 35665    46666677777777777755

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.0035  Score=64.66  Aligned_cols=226  Identities=12%  Similarity=0.041  Sum_probs=137.5

Q ss_pred             CCCchhhhHHHHhhcCCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHH-HhCCCCe--EEEec--CCCCCcccccc
Q 014369          107 CNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRL-VSSGLPV--VEATS--FVSPKWVPQLA  180 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L-~~~Gv~~--IEvG~--~~s~~~~p~~~  180 (426)
                      .|....+++..... ... ..-|+.+|-....|.-|. .++.+.-..++..+ .++||++  |=++.  ..+..|  |..
T Consensus        29 ~n~e~i~Ail~aAe-e~~-sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w--~~~  104 (450)
T 3txv_A           29 AHPLVIEAAMLRAH-REK-APVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNPW--KHL  104 (450)
T ss_dssp             CCHHHHHHHHHHHH-HSC-SCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGGG--TTS
T ss_pred             CCHHHHHHHHHHHH-HhC-CCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCccc--ccc
Confidence            34445666665542 222 345666776654443222 35556666666555 4578884  44432  111111  112


Q ss_pred             CHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369          181 DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  260 (426)
Q Consensus       181 D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~  260 (426)
                      ++++.|+.              ..+.+..++++|...|+|=.|..+  .+.|...|.+-..++..+++++|++.+..+.+
T Consensus       105 ~~~~am~~--------------a~e~i~~aI~AGFtSVMiD~S~~p--~eeNi~lt~evva~rtaeL~~~A~~~~~~~g~  168 (450)
T 3txv_A          105 PADEAMAK--------------AEAMITAYAKAGFTKLHLDTSMGC--AGEPTALPDATTAARAARLAAVAEDAVGGRGG  168 (450)
T ss_dssp             CHHHHHHH--------------HHHHHHHHHTTTCCEEEECCCBCC--SSSCSBCCHHHHHHHHHHHHHHHHHTC-----
T ss_pred             cHHHHHHH--------------HHHHHHHHHHcCCCEEEECCCCCc--hhhccchhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            33333321              246778999999999999766544  35577889999999999999999987554421


Q ss_pred             -EEEeeecCCCC------------CCCCHHHHHHHHHH----HHhCCCC-----EEEEcCCCCCCCHHH-----HHHHHH
Q 014369          261 -YVSCVVGCPVE------------GAIPPSKVAYVAKE----LHDMGCF-----EISLGDTIGVGTPGT-----VVPMLE  313 (426)
Q Consensus       261 -~v~~~fg~pd~------------~r~~~~~l~~~~~~----l~~~Gad-----~I~l~DT~G~~~P~~-----v~~li~  313 (426)
                       .+.++.|.++.            .-++|+...++++.    +.+.|++     .+.|+=-.|+..-..     =.+.++
T Consensus       169 ~e~~yviGtEvpvpGGa~~~~~~~~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~~~  248 (450)
T 3txv_A          169 VLPVYIIGTEVPIPGGALEELDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRARAE  248 (450)
T ss_dssp             -CCEEEEECC-------------CCCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTTTS
T ss_pred             CCceEEeeeecCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHHHH
Confidence             23445666542            25888887776654    5556663     555555566544100     011444


Q ss_pred             HHHHhcCCce-EEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          314 AVMAVVPVEK-LAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       314 ~l~~~~p~~~-i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .|++.++..+ |.+|+|++-|..-.+...+++.|+..+.+
T Consensus       249 ~L~~~v~~~P~LVlhghStDy~~~e~l~~~V~~GiaklNV  288 (450)
T 3txv_A          249 KLSATLGQLHGMVFEAHSTDYQTPDALRELVADGFAILKV  288 (450)
T ss_dssp             HHHHGGGTSTTCEEEESCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHhccCCCEEEecCCCCCCCHHHHHHHHHcCCcEEEE
Confidence            5555553345 99999999999999999999999999876

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=97.54  E-value=0.0026  Score=63.15  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHH-HhHhcCCCcEEEEe---CChhhHHHHHHcCCCEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME-AVRDLEGARLPVLT---PNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~-~i~~~~~~~l~~l~---~~~~di~~a~~~Gv~~V~  219 (426)
                      ....+....++++-.+.+-++|=-.++..-++.+ ......+.. .++...++.+....   ...+.++.++++|...|.
T Consensus        25 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g-~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVM  103 (323)
T 2isw_A           25 VNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSD-MIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVM  103 (323)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTT-THHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeEE
Confidence            4678999999999999999986554432111110 000111222 22222445555543   467889999999999887


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-----CCCCHHHHHHHHHHHHhCCCCEE
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----GAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-----~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      +=.|  .        .+.+|+++..++++++|+..|+.|++-+-..-|.+|.     ..++|+...++++   +.|+|.+
T Consensus       104 iDgS--~--------~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~---~TgvD~L  170 (323)
T 2isw_A          104 IDAS--H--------HPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVE---LTGVDAL  170 (323)
T ss_dssp             ECCT--T--------SCHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------CCCCCHHHHHHHHH---HHCCSEE
T ss_pred             ecCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccccccCCHHHHHHHHH---HHCCCEE
Confidence            7443  2        3678999999999999999999999888775444431     3489999888776   4689955


Q ss_pred             EEc--CCCCCCC-HHHHH-----HHHHHHHHhcCCceEEEEe-------------------CCCcCcHHHHHHHHHHcCC
Q 014369          295 SLG--DTIGVGT-PGTVV-----PMLEAVMAVVPVEKLAVHL-------------------HDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       295 ~l~--DT~G~~~-P~~v~-----~li~~l~~~~p~~~i~~H~-------------------HNd~GlA~ANaLaAl~aGa  347 (426)
                      .++  -.=|.-. |....     ++++.+++.++ ++|.+|+                   ++++|........|+..|+
T Consensus       171 AvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~-vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV  249 (323)
T 2isw_A          171 AVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTG-IPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGV  249 (323)
T ss_dssp             EECSSCCSSSBCCCC----CCCCHHHHHHHHHHC-SCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTE
T ss_pred             EEecCccccccCCCCCcccccCHHHHHHHHHHhC-CCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHHCCC
Confidence            554  3333322 12222     57788888776 5899999                   4488999999999999998


Q ss_pred             CEE
Q 014369          348 STV  350 (426)
Q Consensus       348 ~~V  350 (426)
                      .-|
T Consensus       250 ~Ki  252 (323)
T 2isw_A          250 CKI  252 (323)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            855

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.43  E-value=0.0017  Score=61.56  Aligned_cols=151  Identities=22%  Similarity=0.157  Sum_probs=104.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      -+.++-++++++|.+.|++.||+++-. +       +..+.++.++ ..++..+.+=+ .+.++++.|+++|++.|....
T Consensus        43 ~~~~~a~~~a~al~~gGi~~iEvt~~t-~-------~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~  114 (232)
T 4e38_A           43 DNAEDIIPLGKVLAENGLPAAEITFRS-D-------AAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG  114 (232)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------CHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC
Confidence            356778999999999999999998632 2       2345566565 45666555432 468899999999999986431


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                        .+                  .++++++++.|+.+..           +-.+|.++..    +.++|+|.|-+      
T Consensus       115 --~~------------------~~vi~~~~~~gi~~ip-----------Gv~TptEi~~----A~~~Gad~vK~------  153 (232)
T 4e38_A          115 --FN------------------PNTVRACQEIGIDIVP-----------GVNNPSTVEA----ALEMGLTTLKF------  153 (232)
T ss_dssp             --CC------------------HHHHHHHHHHTCEEEC-----------EECSHHHHHH----HHHTTCCEEEE------
T ss_pred             --CC------------------HHHHHHHHHcCCCEEc-----------CCCCHHHHHH----HHHcCCCEEEE------
Confidence              11                  2667788889987652           1235665444    46899998877      


Q ss_pred             CCHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       303 ~~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                       .|.+.   .++++.++..+|.+++-.    +=|....|+-..+++|+..
T Consensus       154 -FPa~~~gG~~~lkal~~p~p~ip~~p----tGGI~~~n~~~~l~aGa~~  198 (232)
T 4e38_A          154 -FPAEASGGISMVKSLVGPYGDIRLMP----TGGITPSNIDNYLAIPQVL  198 (232)
T ss_dssp             -CSTTTTTHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTBC
T ss_pred             -CcCccccCHHHHHHHHHHhcCCCeee----EcCCCHHHHHHHHHCCCeE
Confidence             23111   378899988888666654    3455567899999999863

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=97.35  E-value=0.0073  Score=59.02  Aligned_cols=194  Identities=16%  Similarity=0.166  Sum_probs=131.0

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---h--cCCCcEEEEe---CChh
Q 014369          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---D--LEGARLPVLT---PNLK  205 (426)
Q Consensus       136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~--~~~~~l~~l~---~~~~  205 (426)
                      .+.+..+.  ....+....++++-.+.+-++|=-.++..-++   +...+.+...++   .  ..++.+....   .+.+
T Consensus        18 ~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~---~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e   94 (288)
T 3q94_A           18 EGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARH---MTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFE   94 (288)
T ss_dssp             HHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHH---TSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHH
T ss_pred             HCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhh---cCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHH
Confidence            34454433  47889999999999999999765544321111   011222222232   2  2334444433   4688


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKV  279 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~l  279 (426)
                      .+..|+++|...|.+=.|.          .+.+|+++..++++++|+..|+.|++-+-..-|.+|.      ..++|+..
T Consensus        95 ~i~~ai~~GFtSVMiDgS~----------~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea  164 (288)
T 3q94_A           95 KCKEAIDAGFTSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAEC  164 (288)
T ss_dssp             HHHHHHHHTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHH
T ss_pred             HHHHHHHcCCCeEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHH
Confidence            9999999999988874432          3678999999999999999999999888776555543      25899988


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCC---C---HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVG---T---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~---~---P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .++++   +.|+|.+.++  +|..   +   |.==.++++.+++.+| +||.+|+=  -|........|+..|+.-|
T Consensus       165 ~~Fv~---~TgvD~LAva--iGt~HG~Y~~~p~Ld~~~L~~I~~~v~-vpLVlHGg--SG~~~e~i~~ai~~Gv~Ki  233 (288)
T 3q94_A          165 KHLVE---ATGIDCLAPA--LGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHGG--TGIPTADIEKAISLGTSKI  233 (288)
T ss_dssp             HHHHH---HHCCSEEEEC--SSCBSSCCSSSCCCCHHHHHHHHHHHC-SCEEECCC--TTCCHHHHHHHHHTTEEEE
T ss_pred             HHHHH---HHCCCEEEEE--cCcccCCcCCCCccCHHHHHHHHHhcC-CCEEEeCC--CCCCHHHHHHHHHcCCeEE
Confidence            87765   5788866554  3321   2   2222455677777777 47887765  4888899999999998755

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.26  E-value=0.017  Score=52.48  Aligned_cols=155  Identities=18%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-C-CCcEEE-EeCChhhHHHHHHcCCCEEEEe
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPV-LTPNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~-~~~l~~-l~~~~~di~~a~~~Gv~~V~i~  221 (426)
                      .+.++-.++++.+.+.|++.||+.+-. +       +..+.++.+|+. + +..+.+ .+.+.+.++.+.+.|+|.| +.
T Consensus        19 ~~~~~~~~~~~~~~~~G~~~iev~~~~-~-------~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~   89 (205)
T 1wa3_A           19 NSVEEAKEKALAVFEGGVHLIEITFTV-P-------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VS   89 (205)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-EC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-Ec
Confidence            467778999999999999999997632 1       234455666643 4 455544 3467888999999999999 43


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG  301 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G  301 (426)
                       +..+                  .++++++++.|+.+.+.+           .++.+    ++.+.++|+|.|.+-..  
T Consensus        90 -~~~~------------------~~~~~~~~~~g~~vi~g~-----------~t~~e----~~~a~~~Gad~vk~~~~--  133 (205)
T 1wa3_A           90 -PHLD------------------EEISQFCKEKGVFYMPGV-----------MTPTE----LVKAMKLGHTILKLFPG--  133 (205)
T ss_dssp             -SSCC------------------HHHHHHHHHHTCEEECEE-----------CSHHH----HHHHHHTTCCEEEETTH--
T ss_pred             -CCCC------------------HHHHHHHHHcCCcEECCc-----------CCHHH----HHHHHHcCCCEEEEcCc--
Confidence             2111                  256778888998875311           23444    44567899998876320  


Q ss_pred             CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          302 VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                        .+. -.++++.+++.+|..++..=+-=+    ..|+...+++||+.|-
T Consensus       134 --~~~-g~~~~~~l~~~~~~~pvia~GGI~----~~~~~~~~~~Ga~~v~  176 (205)
T 1wa3_A          134 --EVV-GPQFVKAMKGPFPNVKFVPTGGVN----LDNVCEWFKAGVLAVG  176 (205)
T ss_dssp             --HHH-HHHHHHHHHTTCTTCEEEEBSSCC----TTTHHHHHHHTCSCEE
T ss_pred             --ccc-CHHHHHHHHHhCCCCcEEEcCCCC----HHHHHHHHHCCCCEEE
Confidence              111 235677777777655666644333    3588888999998663

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=97.24  E-value=0.0098  Score=58.58  Aligned_cols=191  Identities=18%  Similarity=0.177  Sum_probs=131.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe---CChhhHHHHHHcCCCEEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT---PNLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~~~~di~~a~~~Gv~~V~i  220 (426)
                      ....++...++++-.+.+-++|=-.++..-++.+ ......++..+.. .++.+....   .+.+.+..|+++|...|.+
T Consensus        24 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g-~~~~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GFtSVMi  101 (305)
T 1rvg_A           24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGG-RALTLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGFTSVMI  101 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHH-HHHHHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCC-HHHHHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCCCeeee
Confidence            4678898999999999999987655432111110 0001112222223 445554433   4678899999999998877


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhCCCC
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      =.|  .        .+.+|+++..++++++|+..|+.|++-+-..-|.++.        -.++|+...+++++   .|+|
T Consensus       102 DgS--~--------~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~---TgvD  168 (305)
T 1rvg_A          102 DKS--H--------EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMER---TGAD  168 (305)
T ss_dssp             CCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHH---HCCS
T ss_pred             CCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHH---HCCC
Confidence            443  2        3678999999999999999999999888776444542        24899998887764   5899


Q ss_pred             EEEEc--CCCCCCC----HHHHHHHHHHHHHhcCCceEEEEeCC-------------------CcCcHHHHHHHHHHcCC
Q 014369          293 EISLG--DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHD-------------------TYGQSLPNILISLQMGI  347 (426)
Q Consensus       293 ~I~l~--DT~G~~~----P~~v~~li~~l~~~~p~~~i~~H~HN-------------------d~GlA~ANaLaAl~aGa  347 (426)
                      .+.++  -.=|.-.    |.==.++++.+++.+| ++|.+|+=.                   ++|........|+..|+
T Consensus       169 ~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~-vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV  247 (305)
T 1rvg_A          169 YLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGI  247 (305)
T ss_dssp             EEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTE
T ss_pred             EEEEecCccccccCCCCCCccCHHHHHHHHHhcC-CCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHHCCC
Confidence            55554  3334332    2222467888888888 589999866                   56888899999999998


Q ss_pred             CEE
Q 014369          348 STV  350 (426)
Q Consensus       348 ~~V  350 (426)
                      .-|
T Consensus       248 ~Ki  250 (305)
T 1rvg_A          248 AKI  250 (305)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            755

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=97.22  E-value=0.017  Score=54.09  Aligned_cols=173  Identities=17%  Similarity=0.198  Sum_probs=103.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCc----cc-----------cccCHHHHHHHhHhcCCCcEEEEeC-C---
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW----VP-----------QLADARDVMEAVRDLEGARLPVLTP-N---  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~----~p-----------~~~D~~~v~~~i~~~~~~~l~~l~~-~---  203 (426)
                      .++.+.-+++++.|.+. ++.||++.|.+ |..    ++           .+....++++.+++..+..+..+.. +   
T Consensus        15 ~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~   93 (248)
T 1geq_A           15 DPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY   93 (248)
T ss_dssp             SSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence            34557888999999999 99999997643 211    11           1111133444555444555666653 4   


Q ss_pred             ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          .+.++.++++|++.|.+..-.                .+...+++++++++|.++...+.     |   .++.+.+
T Consensus        94 ~~~~~~~~~~~~~~Gad~v~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~i~-----~---~t~~e~~  149 (248)
T 1geq_A           94 RAGVRNFLAEAKASGVDGILVVDLP----------------VFHAKEFTEIAREEGIKTVFLAA-----P---NTPDERL  149 (248)
T ss_dssp             HHCHHHHHHHHHHHTCCEEEETTCC----------------GGGHHHHHHHHHHHTCEEEEEEC-----T---TCCHHHH
T ss_pred             hcCHHHHHHHHHHCCCCEEEECCCC----------------hhhHHHHHHHHHHhCCCeEEEEC-----C---CCHHHHH
Confidence                367899999999999996321                12245677888889987653221     1   1333443


Q ss_pred             HHHHHHHHhCCCC-EEEEcCCCCCC-----CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHcCCCEEe
Q 014369          280 AYVAKELHDMGCF-EISLGDTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVD  351 (426)
Q Consensus       280 ~~~~~~l~~~Gad-~I~l~DT~G~~-----~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~aGa~~VD  351 (426)
                      ..+.+    . ++ .|++....|..     .+....++++.+++... .+|.+    .-|... .|+...+.+||+.|-
T Consensus       150 ~~~~~----~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~-~pi~~----~GGI~~~e~i~~~~~~Gad~vi  218 (248)
T 1geq_A          150 KVIDD----M-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICR-NKVAV----GFGVSKREHVVSLLKEGANGVV  218 (248)
T ss_dssp             HHHHH----H-CSSEEEEECCC-------CCCHHHHHHHHHHHHHCS-SCEEE----ESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHh----c-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcC-CCEEE----EeecCCHHHHHHHHHcCCCEEE
Confidence            33322    2 45 66665554432     23455677888888653 23443    456666 777777799999764

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=97.05  E-value=0.017  Score=56.38  Aligned_cols=185  Identities=14%  Similarity=0.148  Sum_probs=125.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      ..+.+....++++-.+.+-++|=-.++..-++.    ..+.+...++   +..++.+....   ...+.++.|+++|...
T Consensus        25 v~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~----g~~~~~~~v~~~a~~~~VPValHlDHg~~~e~i~~ai~~GFtS  100 (286)
T 1gvf_A           25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS  100 (286)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhc----CHHHHHHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHHHcCCCe
Confidence            467888899999999999998755544321111    1233333333   22334444433   5688999999999988


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=.|  .        .+.+|+++..++++++|+..|+.|++-+-..-|.+|.        ..++|+...++++   +.
T Consensus       101 VMiDgS--~--------lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~---~T  167 (286)
T 1gvf_A          101 AMIDGS--H--------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT  167 (286)
T ss_dssp             EEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHH---HH
T ss_pred             EEECCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence            877433  2        3578999999999999999999999888765443432        2488998888776   57


Q ss_pred             CCCEEEEcCCCCCC------CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          290 GCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       290 Gad~I~l~DT~G~~------~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+|.+.++  +|..      .|.==.++++.+++.++ ++|.+|+  --|........|+..|+.-|
T Consensus       168 gvD~LAva--iGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vpLVlHG--gSG~~~e~i~~ai~~Gv~Ki  229 (286)
T 1gvf_A          168 GVDSLAVA--IGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIELGVTKV  229 (286)
T ss_dssp             CCSEEEEC--SSCCSSCCSSCCCCCHHHHHHHHHHCC-SCEEECC--CTTCCHHHHHHHHHTTEEEE
T ss_pred             CCCEEEee--cCccccCcCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHCCCeEE
Confidence            89955543  3322      23222456777888777 4788877  45788889999999998755

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=97.04  E-value=0.0033  Score=59.30  Aligned_cols=163  Identities=15%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc--CCCcEEE--EeCCh-hhHHHHHHcCCCEEEE
Q 014369          150 KVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL--EGARLPV--LTPNL-KGFEAAIAAGAKEVAI  220 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i  220 (426)
                      -.+-++.|.++|.+.+-+    |.|+     |+++-...+.+.+|+.  ++..+-+  ++.+. .-++.+.++|++.|.+
T Consensus        19 l~~~i~~l~~~g~d~~h~DVmDg~Fv-----pn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itv   93 (228)
T 3ovp_A           19 LGAECLRMLDSGADYLHLDVMDGHFV-----PNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTF   93 (228)
T ss_dssp             HHHHHHHHHHTTCSCEEEEEEBSSSS-----SCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCcC-----cccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence            345667788999996555    4554     3443334567777754  5555544  44443 5688899999999999


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----  296 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----  296 (426)
                      ..-..                +.+.+.++.+|++|+++.+.+.     |   .++.+.+.++.    + .+|.|.+    
T Consensus        94 H~Ea~----------------~~~~~~i~~i~~~G~k~gval~-----p---~t~~e~l~~~l----~-~~D~Vl~msv~  144 (228)
T 3ovp_A           94 HLEAT----------------ENPGALIKDIRENGMKVGLAIK-----P---GTSVEYLAPWA----N-QIDMALVMTVE  144 (228)
T ss_dssp             EGGGC----------------SCHHHHHHHHHHTTCEEEEEEC-----T---TSCGGGTGGGG----G-GCSEEEEESSC
T ss_pred             ccCCc----------------hhHHHHHHHHHHcCCCEEEEEc-----C---CCCHHHHHHHh----c-cCCeEEEeeec
Confidence            64221                2245777888999998765432     2   13334443333    2 2676654    


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       297 ~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +...|...-.+..+.++.+++..+..+|.+    |-|.-..|+-.++++||+.+
T Consensus       145 pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~t~~~~~~aGAd~~  194 (228)
T 3ovp_A          145 PGFGGQKFMEDMMPKVHWLRTQFPSLDIEV----DGGVGPDTVHKCAEAGANMI  194 (228)
T ss_dssp             TTTCSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCSTTTHHHHHHHTCCEE
T ss_pred             CCCCCcccCHHHHHHHHHHHHhcCCCCEEE----eCCcCHHHHHHHHHcCCCEE
Confidence            333343322334455888888776556666    45666788999999999976

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=96.95  E-value=0.014  Score=56.07  Aligned_cols=177  Identities=19%  Similarity=0.118  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE----Ee----C--C---hhhHHHHHH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV----LT----P--N---LKGFEAAIA  212 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~----l~----~--~---~~di~~a~~  212 (426)
                      +.++..++++...+.|++.|-+..    .+          .+... ..+..+.+    .+    +  +   ...++.|++
T Consensus        39 ~~~di~~~~~~a~~~~~~av~v~~----~~----------v~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~  103 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGVVFQR----GI----------AEKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVS  103 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEEEECH----HH----------HHHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHHHHHH
T ss_pred             chhhHHHHHHHHHhhCCCEEEECH----HH----------HHHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHH
Confidence            566778899999999999887742    11          11111 22222111    11    1  1   246899999


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|++.|.+.+...+        .+.++.++.+.++++.++++|+++... ++.-|.......+++.+.+.++.+.++|+|
T Consensus       104 ~Ga~~v~~~~nig~--------~~~~~~~~~~~~v~~~~~~~~~~vIi~-~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD  174 (263)
T 1w8s_A          104 LGASAVGYTIYPGS--------GFEWKMFEELARIKRDAVKFDLPLVVE-SFPRGGKVVNETAPEIVAYAARIALELGAD  174 (263)
T ss_dssp             TTCSEEEEEECTTS--------TTHHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEEecCC--------cCHHHHHHHHHHHHHHHHHcCCeEEEE-eeCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence            99998877653221        245678899999999999999987543 222111111112678888888999999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC--CcCcHHHHHHHHHHcCCCEEee
Q 014369          293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN--d~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .|-.. +.|  .|+.++.+.+.. ...|.  +..=+=.  |+-.+++|.-.++++||+.+-+
T Consensus       175 ~vkt~-~~~--~~e~~~~~~~~~-~~~pV--~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsv  230 (263)
T 1w8s_A          175 AMKIK-YTG--DPKTFSWAVKVA-GKVPV--LMSGGPKTKTEEDFLKQVEGVLEAGALGIAV  230 (263)
T ss_dssp             EEEEE-CCS--SHHHHHHHHHHT-TTSCE--EEECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEc-CCC--CHHHHHHHHHhC-CCCeE--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            98888 533  666666655443 22242  2222333  7888999999999999985543

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=96.95  E-value=0.0041  Score=58.54  Aligned_cols=169  Identities=19%  Similarity=0.203  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCCh-hhHHHHHHcCCCEEEEecc--
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPNL-KGFEAAIAAGAKEVAIFAS--  223 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~~-~di~~a~~~Gv~~V~i~~~--  223 (426)
                      .-.+.++.+.+.|++.|++... ...++|.+....++.+.+++..+..+-  .++.+. +-++.++++|++.|++..-  
T Consensus        18 ~l~~~i~~~~~~Gad~ihldi~-DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~   96 (230)
T 1tqj_A           18 RLGEEIKAVDEAGADWIHVDVM-DGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHN   96 (230)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEE-BSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTT
T ss_pred             HHHHHHHHHHHcCCCEEEEEEE-ecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECcccc
Confidence            3456778889999999999752 222345554444667777765555554  344443 4689999999999988754  


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC----C
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD----T  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D----T  299 (426)
                      ..+                ...+.++.+++.|+.+.+.+.     |.   ++.+.+.++.     .++|.|++.=    +
T Consensus        97 ~~~----------------~~~~~~~~i~~~g~~~gv~~~-----p~---t~~e~~~~~~-----~~~D~v~~msv~pg~  147 (230)
T 1tqj_A           97 ASP----------------HLHRTLCQIRELGKKAGAVLN-----PS---TPLDFLEYVL-----PVCDLILIMSVNPGF  147 (230)
T ss_dssp             TCT----------------THHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTG-----GGCSEEEEESSCC--
T ss_pred             cch----------------hHHHHHHHHHHcCCcEEEEEe-----CC---CcHHHHHHHH-----hcCCEEEEEEecccc
Confidence            332                234677788899998774331     21   2223322222     2678774432    2


Q ss_pred             CCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          300 IGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .|.-.+....+.++.+++..+    ..+|.+    +.|....|+-...++||+.|=
T Consensus       148 ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v----~GGI~~~~~~~~~~aGad~vv  199 (230)
T 1tqj_A          148 GGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGANAIV  199 (230)
T ss_dssp             --CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCCEEE
T ss_pred             CCccCcHHHHHHHHHHHHHHHhcCCCCcEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            233334455666677776552    345666    678777888888999999663

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=96.90  E-value=0.1  Score=50.59  Aligned_cols=201  Identities=15%  Similarity=0.094  Sum_probs=117.2

Q ss_pred             EEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCcccc--ccCHHHHHHHhHhcC--CCcEEE
Q 014369          128 KIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQ--LADARDVMEAVRDLE--GARLPV  199 (426)
Q Consensus       128 ~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~--~~D~~~v~~~i~~~~--~~~l~~  199 (426)
                      =|+.+|+   =||++    .++.+..++.++.+.+.|.+.|++|.-+. |..-|.  -.+.+.++..++.+.  ++.++.
T Consensus        10 gilN~TpDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSI   85 (280)
T 1eye_A           10 GVLNVTDDSFSDGGC----YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSI   85 (280)
T ss_dssp             EEEECSCCTTCSSCC----CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEeCCCCCcCCCcc----cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence            4555655   56654    46889999999999999999999996332 221111  122233333344332  667777


Q ss_pred             EeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC------
Q 014369          200 LTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA------  273 (426)
Q Consensus       200 l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r------  273 (426)
                      =+.+.+-+++|+++|++.|.=.-...                 ...++++.++++|..+.  ++..-|.|..-.      
T Consensus        86 DT~~~~va~aAl~aGa~iINdvsg~~-----------------~d~~m~~~~a~~~~~vV--lmh~~G~p~tm~~~~~~y  146 (280)
T 1eye_A           86 DTMRADVARAALQNGAQMVNDVSGGR-----------------ADPAMGPLLAEADVPWV--LMHWRAVSADTPHVPVRY  146 (280)
T ss_dssp             ECSCHHHHHHHHHTTCCEEEETTTTS-----------------SCTTHHHHHHHHTCCEE--EECCCCSCTTCTTSCCCC
T ss_pred             eCCCHHHHHHHHHcCCCEEEECCCCC-----------------CCHHHHHHHHHhCCeEE--EEcCCCCCcchhhcCcch
Confidence            77888899999999998765432110                 01245566778888776  454444443211      


Q ss_pred             CC-----HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHhc-CCceEEEEeCCC-------------
Q 014369          274 IP-----PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAVV-PVEKLAVHLHDT-------------  331 (426)
Q Consensus       274 ~~-----~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~~-p~~~i~~H~HNd-------------  331 (426)
                      .+     .+++.+.++.+.++|++  .|.|==-+|.. +.++-.++++.+.+-- ++.|+-+ +..+             
T Consensus       147 ~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl~-G~Srksfi~~~~~~~~g  225 (280)
T 1eye_A          147 GNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLV-GASRKRFLGALLAGPDG  225 (280)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEE-CCTTCHHHHHHTCCSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEEE-EecchHHHHhhhccccC
Confidence            12     56777888889999987  55553334433 3456666666665421 2323333 2211             


Q ss_pred             --------cCcHHHHHHHHHHcCCCEEee
Q 014369          332 --------YGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       332 --------~GlA~ANaLaAl~aGa~~VD~  352 (426)
                              ...-+|-+..|++.|+++|.+
T Consensus       226 ~~~~~~~R~~~t~a~~~~a~~~Ga~Ivrv  254 (280)
T 1eye_A          226 VMRPTDGRDTATAVISALAALHGAWGVRV  254 (280)
T ss_dssp             CCCCGGGGHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCcccchHHHHHHHHHHHHcCCCEEEe
Confidence                    122345566778889888743

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=96.86  E-value=0.24  Score=48.28  Aligned_cols=193  Identities=13%  Similarity=0.092  Sum_probs=120.6

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C--
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P--  202 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~--  202 (426)
                      ..++|-|+=      +..-+.++..++++...+.|+..|-+-    |.|+      +...+.++. .++++.+.+  |  
T Consensus        59 a~~IDhTlL------~p~~T~~dI~~lc~eA~~~g~aaVCV~----P~~V------~~a~~~L~~-s~V~V~tVigFP~G  121 (288)
T 3oa3_A           59 AQIIDHTQL------SLSATGSQIDVLCAEAKEYGFATVCVR----PDYV------SRAVQYLQG-TQVGVTCVIGFHEG  121 (288)
T ss_dssp             GGGEEEECC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGH------HHHHHHTTT-SSCEEEEEESTTTS
T ss_pred             HHhcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEEC----HHHH------HHHHHHcCC-CCCeEEEEeCCCCC
Confidence            356787772      235678888889999999999877663    3333      222333321 346666554  3  


Q ss_pred             -C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369          203 -N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       203 -~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                       .     ...++.|++.|+++|-+.+.+...     ..-..+...+.+..+.+.|.+..++|.    .    | .+..+.
T Consensus       122 ~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~l-----k~g~~~~v~~eI~~V~~a~~~~~lKVI----l----E-t~~Lt~  187 (288)
T 3oa3_A          122 TYSTDQKVSEAKRAMQNGASELDMVMNYPWL-----SEKRYTDVFQDIRAVRLAAKDAILKVI----L----E-TSQLTA  187 (288)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTTTSEEEEE----C----C-GGGCCH
T ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEeehhhh-----cCCcHHHHHHHHHHHHHHhcCCCceEE----E----E-CCCCCH
Confidence             1     236788999999999998765432     123456778888887777765433332    2    1 234567


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          277 SKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +.+...++.+.++|+|-|--.-  +.|.++++++.-| +.+.+.++. ++.+-.=---- -...+++-+++||++|=+|
T Consensus       188 eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lm-r~~v~~~g~-~v~VKAAGGIr-t~edAl~mi~aGA~RiGtS  263 (288)
T 3oa3_A          188 DEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLM-SAVCDSLQS-ETRVKASGGIR-TIEDCVKMVRAGAERLGAS  263 (288)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHH-HHHHHHSSS-CCEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHH-HHHHHHhCC-CceEEEeCCCC-CHHHHHHHHHcCCceeehh
Confidence            8888899999999999887762  1246788887654 444443321 23332211111 1277888899999987444

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.84  E-value=0.017  Score=53.88  Aligned_cols=171  Identities=16%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEeccCC
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .-.+.++.+.+.|++.|++..-- ..++|.+....+..+.+++..+..+.  .++.+ .+.++.+.++|++.|.+....+
T Consensus        20 ~l~~~i~~~~~~Gad~i~l~i~D-g~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~~   98 (228)
T 1h1y_A           20 NLAAEADRMVRLGADWLHMDIMD-GHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVS   98 (228)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEB-SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGC
T ss_pred             HHHHHHHHHHHcCCCEEEEEEec-CCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCCc
Confidence            33567788899999999997311 01122222223555666654443443  44544 3468999999999998876543


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEc----CC
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFEISLG----DT  299 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~--Gad~I~l~----DT  299 (426)
                      +.            .   +.+.++.+++.|+++.+.+.     |.   ++.+.    .+.+.+.  ++|.|.+.    -+
T Consensus        99 ~~------------~---~~~~~~~i~~~g~~igv~~~-----p~---t~~e~----~~~~~~~~~~~d~vl~~sv~pg~  151 (228)
T 1h1y_A           99 RD------------N---WQELIQSIKAKGMRPGVSLR-----PG---TPVEE----VFPLVEAENPVELVLVMTVEPGF  151 (228)
T ss_dssp             TT------------T---HHHHHHHHHHTTCEEEEEEC-----TT---SCGGG----GHHHHHSSSCCSEEEEESSCTTC
T ss_pred             cc------------H---HHHHHHHHHHcCCCEEEEEe-----CC---CCHHH----HHHHHhcCCCCCEEEEEeecCCC
Confidence            31            1   13566677888987763221     21   22233    3344455  88988872    22


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .|.-.+....+.++.+++..+..+|.+    +-|....|+-.++++|||.|=
T Consensus       152 ~g~~~~~~~l~~i~~~~~~~~~~pi~v----~GGI~~~ni~~~~~aGaD~vv  199 (228)
T 1h1y_A          152 GGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIV  199 (228)
T ss_dssp             SSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             CcccCCHHHHHHHHHHHHhcCCCCEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            244445556667888888775445654    457777788888999999663

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=96.83  E-value=0.17  Score=48.36  Aligned_cols=226  Identities=12%  Similarity=0.069  Sum_probs=138.7

Q ss_pred             CCCCccEEEeCCccccCCCCCCC---CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh---Hh-cCC
Q 014369          122 GIPRFVKIVEVGPRDGLQNEKNT---VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV---RD-LEG  194 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~---f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i---~~-~~~  194 (426)
                      .|++.|+|-++++=+|.-..=+.   -+.++.++-++.+.+.|+|.||+=.-.    +....+.+++.+.+   +. ..+
T Consensus         3 ~m~~~v~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~----l~~~~~~~~v~~~l~~lr~~~~~   78 (258)
T 4h3d_A            3 AMKRKVQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDF----FENVENIKEVKEVLYELRSYIHD   78 (258)
T ss_dssp             -CCCCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGG----CTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcceEEEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeecc----ccccCCHHHHHHHHHHHHHhcCC
Confidence            48889999999998875321112   255666777778888999999996421    11123444554444   32 334


Q ss_pred             CcEEEEeCCh-h-------------hHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          195 ARLPVLTPNL-K-------------GFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       195 ~~l~~l~~~~-~-------------di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      ..+..-+|.. +             -++.+++.| ++.|-+-....+               +...++++.+++.|.++.
T Consensus        79 lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~---------------~~~~~l~~~a~~~~~kiI  143 (258)
T 4h3d_A           79 IPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGD---------------EVIDEVVNFAHKKEVKVI  143 (258)
T ss_dssp             SCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccH---------------HHHHHHHHHHHhCCCEEE
Confidence            5555545532 1             134556666 789999875443               223467778888898876


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEeCCCcCcHH
Q 014369          260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA---VVPVEKLAVHLHDTYGQSL  336 (426)
Q Consensus       260 ~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~---~~p~~~i~~H~HNd~GlA~  336 (426)
                      +  ++-.   .....+.+.+.+..+.+.+.|+|.+-|+=+.  -.+.++.+++....+   ..+..|+-.-+=-..|.  
T Consensus       144 ~--S~Hd---f~~TP~~~el~~~~~~~~~~gaDIvKia~~~--~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~--  214 (258)
T 4h3d_A          144 I--SNHD---FNKTPKKEEIVSRLCRMQELGADLPKIAVMP--QNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGV--  214 (258)
T ss_dssp             E--EEEE---SSCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGG--
T ss_pred             E--EEec---CCCCCCHHHHHHHHHHHHHhCCCEEEEEEcc--CCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCh--
Confidence            3  3321   1223355788888999999999999998664  468888888776543   34444444333333332  


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          337 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       337 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      -.=+.+-..|-....+++.. .-      ..|+.+++++-..|+.+
T Consensus       215 ~SRi~~~~fGS~lTf~~~~~-~s------APGQl~~~el~~~l~lL  253 (258)
T 4h3d_A          215 ISRLCGEIFGSALTFGAAKS-VS------APGQISFKELNSVLNLL  253 (258)
T ss_dssp             GGGTCHHHHCBCEEECBCC----------CTTCCBHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCceEeccCCC-CC------CCCCCCHHHHHHHHHHH
Confidence            22334444576767776532 22      46799999998887654

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=96.81  E-value=0.016  Score=57.18  Aligned_cols=189  Identities=17%  Similarity=0.141  Sum_probs=125.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hc-CCCcEEEEe---CChhhHHHHHHcCCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DL-EGARLPVLT---PNLKGFEAAIAAGAK  216 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~-~~~~l~~l~---~~~~di~~a~~~Gv~  216 (426)
                      ....+....++++-.+.+-++|=-.++..-++    ...+.+...++   .. .++.+....   ...+.+..|+++|..
T Consensus        24 v~n~e~~~avi~AAee~~sPvIlq~s~g~~~y----~g~~~~~~~v~~aa~~~~~VPValHLDHg~~~e~~~~ai~~GFt   99 (307)
T 3n9r_A           24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKY----MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT   99 (307)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHH----HCHHHHHHHHHHHHHHSTTSCEEEEEEEECSHHHHHHHHHHTCS
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhhhhh----CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHhCCC
Confidence            46888889999999999999765544321111    11122222222   21 345555433   467889999999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHD  288 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~  288 (426)
                      .|.+=.|  .        .+.+|+++..++++++|+..|+.|++-+-..-|.+|.        ..++|+...++++   +
T Consensus       100 SVMiDgS--~--------~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~---~  166 (307)
T 3n9r_A          100 SVMIDAS--H--------HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E  166 (307)
T ss_dssp             EEEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHH---H
T ss_pred             cEEEECC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHH---H
Confidence            8887433  2        3678999999999999999999999888765444432        2479999888776   4


Q ss_pred             CCCCEEEEc--CCCCCC----CHHHHHHHHHHHHHhcCCceEEEEe-------------------CCCcCcHHHHHHHHH
Q 014369          289 MGCFEISLG--DTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHL-------------------HDTYGQSLPNILISL  343 (426)
Q Consensus       289 ~Gad~I~l~--DT~G~~----~P~~v~~li~~l~~~~p~~~i~~H~-------------------HNd~GlA~ANaLaAl  343 (426)
                      .|+|.+.++  -.=|.-    .|.==.++++.+++ .++.||.+|+                   ++++|........|+
T Consensus       167 TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~-~~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai  245 (307)
T 3n9r_A          167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR-LTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESV  245 (307)
T ss_dssp             HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHH-HHCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHH
T ss_pred             HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHh-cCCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHH
Confidence            699966654  222321    12111233444443 3345799997                   447799999999999


Q ss_pred             HcCCCEE
Q 014369          344 QMGISTV  350 (426)
Q Consensus       344 ~aGa~~V  350 (426)
                      ..|+.-|
T Consensus       246 ~~GV~Ki  252 (307)
T 3n9r_A          246 KGGINKV  252 (307)
T ss_dssp             HTTEEEE
T ss_pred             HcCceEE
Confidence            9998866

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=96.80  E-value=0.013  Score=54.50  Aligned_cols=171  Identities=14%  Similarity=0.155  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCCh-hhHHHHHHcCCCEEEEecc-
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNL-KGFEAAIAAGAKEVAIFAS-  223 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~~-  223 (426)
                      ....+.++.+.+.|++.||++.-- ..++|.+....+..+.++...+..+.+  ++.+. +.++.+.++|++.|.+... 
T Consensus        23 ~~~~~~i~~~~~~G~d~i~l~~~d-g~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~  101 (230)
T 1rpx_A           23 SKLGEQVKAIEQAGCDWIHVDVMD-GRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ  101 (230)
T ss_dssp             GGHHHHHHHHHHTTCCCEEEEEEB-SSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred             HHHHHHHHHHHHCCCCEEEEeecc-CCcccccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence            355678889999999999998410 001122222234555566443333333  33333 4788999999999988754 


Q ss_pred             -CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-
Q 014369          224 -ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-  301 (426)
Q Consensus       224 -~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-  301 (426)
                       .++                ...+.++.+++.|+.+...+.     |.   ++.+.+..+     ..++|.|. .++++ 
T Consensus       102 ~~~~----------------~~~~~~~~~~~~g~~ig~~~~-----p~---t~~e~~~~~-----~~~~d~vl-~~~~~p  151 (230)
T 1rpx_A          102 SSTI----------------HLHRTINQIKSLGAKAGVVLN-----PG---TPLTAIEYV-----LDAVDLVL-IMSVNP  151 (230)
T ss_dssp             TTCS----------------CHHHHHHHHHHTTSEEEEEEC-----TT---CCGGGGTTT-----TTTCSEEE-EESSCT
T ss_pred             ccch----------------hHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHH-----HhhCCEEE-EEEEcC
Confidence             322                123556677778887653332     11   222332221     25788663 45542 


Q ss_pred             ----CCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          302 ----VGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       302 ----~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                          .-.+....+.++.+++..+    ..++.+    +-|....|+-.++++||+.|.+.
T Consensus       152 g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v----~GGI~~~n~~~~~~aGad~vvvg  207 (230)
T 1rpx_A          152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANALVAG  207 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEEEC
Confidence                2223334455666665442    334444    44555578888899999988765

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=96.75  E-value=0.0048  Score=58.34  Aligned_cols=164  Identities=13%  Similarity=0.102  Sum_probs=101.2

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCCh-hhHHHHHHcCCCEEEEeccC-ChH
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNL-KGFEAAIAAGAKEVAIFASA-SEA  227 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~~~-Sd~  227 (426)
                      +-++.+ +.|++.+++... ...++|++.-...+.+.+|...+..+-+  ++.+. +-++.+.++|++.|.+..-. ++ 
T Consensus        17 ~~i~~~-~~gad~lHvDvm-DG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~-   93 (231)
T 3ctl_A           17 EQIEFI-DSHADYFHIDIM-DGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-   93 (231)
T ss_dssp             HHHHHH-HTTCSCEEEEEE-CSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTT-
T ss_pred             HHHHHH-HcCCCEEEEEEE-eCccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCc-
Confidence            345666 899998766421 1122344443456777788655554443  44453 45889999999999886432 21 


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----CCCCCC
Q 014369          228 FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DTIGVG  303 (426)
Q Consensus       228 ~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----DT~G~~  303 (426)
                                     .+.++++.+|++|+++.+.+.     |.   ++.+.+.++.    + ++|.|.+-    -..|..
T Consensus        94 ---------------~~~~~i~~i~~~G~k~gv~ln-----p~---tp~~~~~~~l----~-~~D~VlvmsV~pGfggQ~  145 (231)
T 3ctl_A           94 ---------------QAFRLIDEIRRHDMKVGLILN-----PE---TPVEAMKYYI----H-KADKITVMTVDPGFAGQP  145 (231)
T ss_dssp             ---------------THHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTG----G-GCSEEEEESSCTTCSSCC
T ss_pred             ---------------cHHHHHHHHHHcCCeEEEEEE-----CC---CcHHHHHHHH----h-cCCEEEEeeeccCcCCcc
Confidence                           234778889999998875442     22   3334443333    2 68877642    233433


Q ss_pred             CHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          304 TPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       304 ~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ......+.|+.+++..+    ..+|++    |-|.-..|+-.++++||+.+
T Consensus       146 f~~~~l~kI~~lr~~~~~~~~~~~I~V----dGGI~~~~~~~~~~aGAd~~  192 (231)
T 3ctl_A          146 FIPEMLDKLAELKAWREREGLEYEIEV----DGSCNQATYEKLMAAGADVF  192 (231)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCCEEEE----ESCCSTTTHHHHHHHTCCEE
T ss_pred             ccHHHHHHHHHHHHHHhccCCCceEEE----ECCcCHHHHHHHHHcCCCEE
Confidence            34455556666666542    345666    77888889999999999976

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=96.73  E-value=0.041  Score=53.89  Aligned_cols=201  Identities=17%  Similarity=0.202  Sum_probs=110.1

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCc--cccccCHHHHHHHhHhcC--CCcEE
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW--VPQLADARDVMEAVRDLE--GARLP  198 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~--~p~~~D~~~v~~~i~~~~--~~~l~  198 (426)
                      +=|+-+|+   =||++    .++.+..++.++.+.+.|.+.|++|.-+. |..  ++.-.+.+.+...++.+.  ++.++
T Consensus        32 MGIlNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiS  107 (294)
T 2dqw_A           32 LGVLNLTPDSFSDGGR----YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVS  107 (294)
T ss_dssp             EEEEECCC-----------------CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEE
T ss_pred             EEEEeCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence            34555554   45654    35677778899999999999999997432 211  111112233334444333  56666


Q ss_pred             EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee-cCCCCC----C
Q 014369          199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV-GCPVEG----A  273 (426)
Q Consensus       199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f-g~pd~~----r  273 (426)
                      .=+.+.+-+++|+++|++.|.=   +|-.               ...++++.+++.|..+.  ++..- |.|..-    .
T Consensus       108 IDT~~~~Va~aAl~aGa~iINd---Vsg~---------------~d~~m~~v~a~~~~~vV--lmh~~eG~p~tm~~~~~  167 (294)
T 2dqw_A          108 VDTRKPEVAEEALKLGAHLLND---VTGL---------------RDERMVALAARHGVAAV--VMHMPVPDPATMMAHAR  167 (294)
T ss_dssp             EECSCHHHHHHHHHHTCSEEEC---SSCS---------------CCHHHHHHHHHHTCEEE--EECCSSSCTTTGGGGCC
T ss_pred             EECCCHHHHHHHHHhCCCEEEE---CCCC---------------CChHHHHHHHHhCCCEE--EEcCCCCCCccccccCc
Confidence            6667888899999999995542   2221               01255666778887765  45432 333220    0


Q ss_pred             CC------HHHHHHHHHHHHhCCCCEEEEcCCCCCCC-HHHHHHHHHHHHHhc-CCceEEEEeC---------------C
Q 014369          274 IP------PSKVAYVAKELHDMGCFEISLGDTIGVGT-PGTVVPMLEAVMAVV-PVEKLAVHLH---------------D  330 (426)
Q Consensus       274 ~~------~~~l~~~~~~l~~~Gad~I~l~DT~G~~~-P~~v~~li~~l~~~~-p~~~i~~H~H---------------N  330 (426)
                      ++      .+++.+.++.+.++|+..|.|==-+|... .++-.++++.+++-. ++.++-+=.-               +
T Consensus       168 y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~p~~~~  247 (294)
T 2dqw_A          168 YRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDPAQ  247 (294)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTCCSGGG
T ss_pred             cccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCCCchhh
Confidence            11      35777788888999998666544445544 567777777775431 2323332111               1


Q ss_pred             CcCcHHHHHHHHHHcCCCEEe
Q 014369          331 TYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       331 d~GlA~ANaLaAl~aGa~~VD  351 (426)
                      -.....|-+..|++.|+++|.
T Consensus       248 R~~~t~a~~~~a~~~Ga~IvR  268 (294)
T 2dqw_A          248 RVHGSVAAHLFAVMKGVRLLR  268 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEE
T ss_pred             hHHHHHHHHHHHHHcCCcEEE
Confidence            122233666677888888773

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.67  E-value=0.021  Score=52.80  Aligned_cols=152  Identities=22%  Similarity=0.193  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCC
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .++-+++++.|.+.|++.||++.-.        .+..+.++.+++ ++..+.+=+ -..+.++.|+++|++.|+..-  .
T Consensus        24 ~~~~~~~~~~l~~gGv~~iel~~k~--------~~~~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~--~   92 (207)
T 2yw3_A           24 GEDLLGLARVLEEEGVGALEITLRT--------EKGLEALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG--L   92 (207)
T ss_dssp             CCCHHHHHHHHHHTTCCEEEEECSS--------THHHHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEESS--C
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCC--------hHHHHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC--C
Confidence            3445889999999999999999521        123455566666 555444322 245789999999999997541  1


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP  305 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P  305 (426)
                      +                  .++++.+++.|..+..      |     -.+++++    ..+.++|+|.|.+   .. ..+
T Consensus        93 d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e~----~~A~~~Gad~v~~---fp-a~~  135 (207)
T 2yw3_A           93 L------------------EEVAALAQARGVPYLP------G-----VLTPTEV----ERALALGLSALKF---FP-AEP  135 (207)
T ss_dssp             C------------------HHHHHHHHHHTCCEEE------E-----ECSHHHH----HHHHHTTCCEEEE---TT-TTT
T ss_pred             C------------------HHHHHHHHHhCCCEEe------c-----CCCHHHH----HHHHHCCCCEEEE---ec-Ccc
Confidence            1                  2566777888887542      1     1235553    3345789999988   11 111


Q ss_pred             HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          306 GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       306 ~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .-=.++++.+++.+|.+++..=+    |....|+-.-+.+|++.|
T Consensus       136 ~gG~~~lk~l~~~~~~ipvvaiG----GI~~~n~~~~l~aGa~~v  176 (207)
T 2yw3_A          136 FQGVRVLRAYAEVFPEVRFLPTG----GIKEEHLPHYAALPNLLA  176 (207)
T ss_dssp             TTHHHHHHHHHHHCTTCEEEEBS----SCCGGGHHHHHTCSSBSC
T ss_pred             ccCHHHHHHHHhhCCCCcEEEeC----CCCHHHHHHHHhCCCcEE
Confidence            10136678888878755554322    444578888999999855

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=96.66  E-value=0.078  Score=51.99  Aligned_cols=139  Identities=12%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH-HHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-SKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~-~~l~~~~  283 (426)
                      ..++.|++.|++.|.+.+....       .-+..+.++.+.++++.|++.|+++.+.+. ..|.......++ +.+.+.+
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~-------d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~-~~g~~v~~~~~~~~~v~~aa  183 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRS-------DEDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAA  183 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECT-------TSCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHH
T ss_pred             hhHHHHHHcCCCEEEEEEEcCC-------CccHHHHHHHHHHHHHHHHHcCCcEEEEEE-CCCCccccCCChhHHHHHHH
Confidence            5689999999998775442211       012357889999999999999999775532 122222222456 8888889


Q ss_pred             HHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhcCCce-EEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          284 KELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT-~G~~~P~~v~~li~~l~~~~p~~~-i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +.+.++|+|.|.+.=+ .|...++.+.++++......+. + |.+=+=.+.-.-+.+.-.|+++|++.|-+
T Consensus       184 ~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~-P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v  253 (304)
T 1to3_A          184 KELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINM-PWVILSSGVDEKLFPRAVRVAMEAGASGFLA  253 (304)
T ss_dssp             HHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCS-CEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCC-CeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999999999887653 2334788888888886554332 3 33322225555668888899999987643

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.64  E-value=0.039  Score=50.07  Aligned_cols=164  Identities=20%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCC-hh-hHHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPN-LK-GFEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~-~~-di~~a~~~Gv~~V~  219 (426)
                      .+.++-+++++.|.+ |++.||+|.+..-      .+..++++.+++. ++..+.+  .+.+ .+ -++.+.++|++.|.
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~~~------~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~   82 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPLIK------AEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVT   82 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHHHH------HHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHHHH------hhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEE
Confidence            467888999999988 9999999964210      1112345555543 4555443  3345 33 37889999999998


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c-
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-G-  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-~-  297 (426)
                      +.....+            +   .+.++++.+++.|..+.  ++.      .+..+|+..   ++.+.+.|+|.|.+ . 
T Consensus        83 vh~~~~~------------~---~~~~~~~~~~~~g~~~g--v~~------~s~~~p~~~---~~~~~~~g~d~v~~~~~  136 (207)
T 3ajx_A           83 VLGSADD------------S---TIAGAVKAAQAHNKGVV--VDL------IGIEDKATR---AQEVRALGAKFVEMHAG  136 (207)
T ss_dssp             EETTSCH------------H---HHHHHHHHHHHHTCEEE--EEC------TTCSSHHHH---HHHHHHTTCSEEEEECC
T ss_pred             EeccCCh------------H---HHHHHHHHHHHcCCceE--EEE------ecCCChHHH---HHHHHHhCCCEEEEEec
Confidence            8655432            1   23356667777888753  221      122345542   33445678998833 2 


Q ss_pred             CC---CCCCCHHHHHHHHHHHHH-hcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          298 DT---IGVGTPGTVVPMLEAVMA-VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       298 DT---~G~~~P~~v~~li~~l~~-~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      -+   .|. .|..  +.++.++. ..|   +.+    +-|-...|.-.++++||+.|=
T Consensus       137 ~~~~~~g~-~~~~--~~i~~~~~~~~p---i~v----~GGI~~~~~~~~~~aGad~vv  184 (207)
T 3ajx_A          137 LDEQAKPG-FDLN--GLLAAGEKARVP---FSV----AGGVKVATIPAVQKAGAEVAV  184 (207)
T ss_dssp             HHHHTSTT-CCTH--HHHHHHHHHTSC---EEE----ESSCCGGGHHHHHHTTCSEEE
T ss_pred             ccccccCC-CchH--HHHHHhhCCCCC---EEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            11   332 3444  55666655 333   333    223444588889999999763

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=96.61  E-value=0.11  Score=51.18  Aligned_cols=200  Identities=12%  Similarity=0.114  Sum_probs=115.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccc---cccCHHH---HHHHhHh---cCCCc
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVP---QLADARD---VMEAVRD---LEGAR  196 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p---~~~D~~~---v~~~i~~---~~~~~  196 (426)
                      +=|+-+|+.-=..   ..++.+..++.++.+.+.|.+.|++|.-+. |..-+   .....+|   +...++.   ..++.
T Consensus        31 MGIlNvTpDSFsd---~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vp  107 (314)
T 3tr9_A           31 MGIINVSPNSFYH---PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQL  107 (314)
T ss_dssp             EEEEECSTTCSBC---BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEEEeCCCCchhh---ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCe
Confidence            3455666543333   346889999999999999999999996443 32110   0111223   2222332   23555


Q ss_pred             EEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC-
Q 014369          197 LPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-  275 (426)
Q Consensus       197 l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~-  275 (426)
                      ++.=+.+.+-+++|+++|++.|.=.-...                  ..++++.+++.|..+.  ++..-|.|..-... 
T Consensus       108 ISIDT~~~~Va~aAl~aGa~iINDVsg~~------------------~~~m~~v~a~~g~~vV--lMh~~G~P~tmq~~~  167 (314)
T 3tr9_A          108 ISVDTSRPRVMREAVNTGADMINDQRALQ------------------LDDALTTVSALKTPVC--LMHFPSETRKPGSTT  167 (314)
T ss_dssp             EEEECSCHHHHHHHHHHTCCEEEETTTTC------------------STTHHHHHHHHTCCEE--EECCCCTTCCTTSSC
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEEECCCCC------------------chHHHHHHHHhCCeEE--EECCCCCCccccccc
Confidence            65556778888999999998665431111                  1245556677887766  55544444321111 


Q ss_pred             --------HHHHHHHHHHHHhCCCC--EEEEcCCCC---C-CCHHHHHHHHHHHHHh----cCCceEEE-----------
Q 014369          276 --------PSKVAYVAKELHDMGCF--EISLGDTIG---V-GTPGTVVPMLEAVMAV----VPVEKLAV-----------  326 (426)
Q Consensus       276 --------~~~l~~~~~~l~~~Gad--~I~l~DT~G---~-~~P~~v~~li~~l~~~----~p~~~i~~-----------  326 (426)
                              .+++.+.++.+.++|++  .|.|==-+|   . -++++-.++++.+..-    +|.. +++           
T Consensus       168 ~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL-~G~SRKsfig~~~~  246 (314)
T 3tr9_A          168 HFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVL-SGWSRKSMIGDVLN  246 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBE-ECCTTCHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEE-EEechhhhhhhhcC
Confidence                    35677788888999985  555422345   2 2456666666665432    2321 222           


Q ss_pred             -EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          327 -HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       327 -H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                       -..+..+-.+|-+..|++.||++|
T Consensus       247 ~~~~~R~~~t~a~~~~a~~~Ga~Iv  271 (314)
T 3tr9_A          247 QPPENRLFGSIAADVLAVYHGASII  271 (314)
T ss_dssp             CCGGGCHHHHHHHHHHHHHTTCSEE
T ss_pred             CChHHhHHHHHHHHHHHHHcCCcEE
Confidence             122334444566777889999988

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.59  E-value=0.079  Score=48.82  Aligned_cols=221  Identities=19%  Similarity=0.132  Sum_probs=116.2

Q ss_pred             CCcccc--CCCCCCCCC----HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CC
Q 014369          132 VGPRDG--LQNEKNTVP----TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN  203 (426)
Q Consensus       132 ~TLRDG--~Q~~~~~f~----~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~  203 (426)
                      .-+|||  .=..+..+.    .++-+++++.+.+.|++.|++.-.....  +......+.++.+++..++.+.+..  .+
T Consensus        11 id~~~g~~~~v~g~~~~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~   88 (253)
T 1h5y_A           11 LDIDGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAP--EGRATFIDSVKRVAEAVSIPVLVGGGVRS   88 (253)
T ss_dssp             EEECGGGCEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCT--TTHHHHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred             EEEcCCceEEEEcccccceeecccHHHHHHHHHHcCCCEEEEEeCCccc--cCCcccHHHHHHHHHhcCCCEEEECCCCC
Confidence            446788  333233221    2355789999999999999986432210  1111112334444433345544432  46


Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEe-------eecCCCCCC-C
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSC-------VVGCPVEGA-I  274 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~-------~fg~pd~~r-~  274 (426)
                      .++++.++++|++.|.+...                .+.....+.+.++.+|.. +.+.+..       .+-. .... .
T Consensus        89 ~~~~~~~~~~Gad~V~i~~~----------------~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~-~~~~~~  151 (253)
T 1h5y_A           89 LEDATTLFRAGADKVSVNTA----------------AVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYV-KGGREA  151 (253)
T ss_dssp             HHHHHHHHHHTCSEEEESHH----------------HHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEE-TTTTEE
T ss_pred             HHHHHHHHHcCCCEEEEChH----------------HhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEE-eCCeec
Confidence            78899999999999998632                111111223344455532 3222221       0000 0000 0


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEE--cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEe
Q 014369          275 PPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVD  351 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l--~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD  351 (426)
                      +.....+.++.+.++|++.|.+  .+..|..... -.++++.+++..+ .+|.+=    -|.. ..++..++++||+.|-
T Consensus       152 ~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~~-~pvia~----GGi~~~~~~~~~~~~Ga~~v~  225 (253)
T 1h5y_A          152 TGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSVR-IPVIAS----GGAGRVEHFYEAAAAGADAVL  225 (253)
T ss_dssp             EEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHCS-SCEEEE----SCCCSHHHHHHHHHTTCSEEE
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcC-CHHHHHHHHHhcC-CCEEEe----CCCCCHHHHHHHHHcCCcHHH
Confidence            0012334567778899999988  3433332211 1345566666543 234432    3444 3788888899999663


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                      +.=.=+         .+..+++++...|+..|++.
T Consensus       226 vgsal~---------~~~~~~~~~~~~l~~~g~~~  251 (253)
T 1h5y_A          226 AASLFH---------FRVLSIAQVKRYLKERGVEV  251 (253)
T ss_dssp             ESHHHH---------TTSSCHHHHHHHHHHTTCBC
T ss_pred             HHHHHH---------cCCCCHHHHHHHHHHcCCCC
Confidence            321111         12235788888998888763

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=96.57  E-value=0.0026  Score=60.81  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcC-CCcEEE--EeCC-hhhHHHHHHcCCCEEEEe
Q 014369          150 KVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLE-GARLPV--LTPN-LKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~--l~~~-~~di~~a~~~Gv~~V~i~  221 (426)
                      -.+-++.|.++|++.+.+    |.|+     |+++-...+++.+|+.. +..+-+  ++.+ .+-++.++++|++.|.+.
T Consensus        42 L~~~i~~l~~~G~d~lHvDVmDg~FV-----pnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH  116 (246)
T 3inp_A           42 LGDDVKAVLAAGADNIHFDVMDNHYV-----PNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFH  116 (246)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEEBSSSS-----SCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCcC-----cchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence            345677788899996655    5554     44444456777777543 655544  3333 456888999999999986


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----c
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G  297 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~  297 (426)
                      .-..                +.+.+.++.+|++|+++.+.+.     |.   ++.+.+.++..     .+|.|.+    +
T Consensus       117 ~Ea~----------------~~~~~~i~~ir~~G~k~Gvaln-----p~---Tp~e~l~~~l~-----~vD~VlvMsV~P  167 (246)
T 3inp_A          117 PEAS----------------EHIDRSLQLIKSFGIQAGLALN-----PA---TGIDCLKYVES-----NIDRVLIMSVNP  167 (246)
T ss_dssp             GGGC----------------SCHHHHHHHHHTTTSEEEEEEC-----TT---CCSGGGTTTGG-----GCSEEEEECSCT
T ss_pred             cccc----------------hhHHHHHHHHHHcCCeEEEEec-----CC---CCHHHHHHHHh-----cCCEEEEeeecC
Confidence            4322                2345778888999998875442     21   33344433332     4777765    4


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhc----CCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVV----PVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~----p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ...|...-.+..+.|+.+++..    .+.+|++    |-|....|+-.++++||+.+
T Consensus       168 GfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V----DGGI~~~ti~~~~~aGAD~~  220 (246)
T 3inp_A          168 GFGGQKFIPAMLDKAKEISKWISSTDRDILLEI----DGGVNPYNIAEIAVCGVNAF  220 (246)
T ss_dssp             TC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE----ESSCCTTTHHHHHTTTCCEE
T ss_pred             CCCCcccchHHHHHHHHHHHHHHhcCCCeeEEE----ECCcCHHHHHHHHHcCCCEE
Confidence            4445422233334455665543    2345665    56777778999999999976

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=96.44  E-value=0.31  Score=46.80  Aligned_cols=189  Identities=15%  Similarity=0.073  Sum_probs=119.8

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---
Q 014369          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---  202 (426)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---  202 (426)
                      ..+|-|+=      +..-+.++..++++...+.|+..|-+    +|.|+|      ...+.++ -.++++.+.+  |   
T Consensus        45 ~~IDhTlL------~p~~t~~~I~~lc~eA~~~~~aaVCV----~p~~V~------~a~~~L~-gs~v~v~tVigFP~G~  107 (260)
T 3r12_A           45 SAIEHTNL------KPFATPDDIKKLCLEARENRFHGVCV----NPCYVK------LAREELE-GTDVKVVTVVGFPLGA  107 (260)
T ss_dssp             HHEEEEEC------CTTCCHHHHHHHHHHHHHTTCSEEEE----CGGGHH------HHHHHHT-TSCCEEEEEESTTTCC
T ss_pred             HhcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEE----CHHHHH------HHHHHhc-CCCCeEEEEecCCCCC
Confidence            45788872      22458888889999999999988776    333332      2233332 2356666554  3   


Q ss_pred             C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 ~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      +     ...++.|++.|+++|-+.+.+....     ....+...+.+..+++.+.  |..+-  +...     .+..+.+
T Consensus       108 ~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~--~~~lK--VIlE-----t~~Lt~e  173 (260)
T 3r12_A          108 NETRTKAHEAIFAVESGADEIDMVINVGMLK-----AKEWEYVYEDIRSVVESVK--GKVVK--VIIE-----TCYLDTE  173 (260)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEE--EECC-----GGGCCHH
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEeehhhhc-----cccHHHHHHHHHHHHHhcC--CCcEE--EEEe-----CCCCCHH
Confidence            1     1367789999999999998755421     2245677777877777764  44433  2221     2356788


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          278 KVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .+...++.+.++|+|-|--.--  .|.++++++.-+-+.+...     +.+-.=---- -...+++=+++||++|=+|
T Consensus       174 ei~~A~~ia~eaGADfVKTSTGf~~~GAT~edV~lm~~~vg~~-----v~VKaAGGIr-t~~~al~mi~aGA~RiGtS  245 (260)
T 3r12_A          174 EKIAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVGDE-----MGVKASGGIR-TFEDAVKMIMYGADRIGTS  245 (260)
T ss_dssp             HHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHCTT-----SEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHHHhCcCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-----ceEEEeCCCC-CHHHHHHHHHcCCceeecc
Confidence            9999999999999998877621  2356888877665554322     3332211111 1266777799999988554

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.43  E-value=0.066  Score=50.23  Aligned_cols=152  Identities=20%  Similarity=0.197  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh-HhcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV-RDLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i-~~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+.++-+++++.|.+.|++.||++.-. +       +..+.++.+ +..++..+.+=+ -..++++.|+++|++.|+.. 
T Consensus        26 ~~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p-   96 (224)
T 1vhc_A           26 DNADDILPLADTLAKNGLSVAEITFRS-E-------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP-   96 (224)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS-
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeccC-c-------hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC-
Confidence            356677899999999999999999532 1       233445534 355665544322 25688999999999999653 


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                      . .+                  .++++.++++|..+..      |     -.+++++    ..+.++|+|.|.+      
T Consensus        97 ~-~d------------------~~v~~~ar~~g~~~i~------G-----v~t~~e~----~~A~~~Gad~vk~------  136 (224)
T 1vhc_A           97 G-LN------------------PKIVKLCQDLNFPITP------G-----VNNPMAI----EIALEMGISAVKF------  136 (224)
T ss_dssp             S-CC------------------HHHHHHHHHTTCCEEC------E-----ECSHHHH----HHHHHTTCCEEEE------
T ss_pred             C-CC------------------HHHHHHHHHhCCCEEe------c-----cCCHHHH----HHHHHCCCCEEEE------
Confidence            1 11                  2567788889987652      2     1235553    3456899998888      


Q ss_pred             CCHHH-H--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-CCCEE
Q 014369          303 GTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTV  350 (426)
Q Consensus       303 ~~P~~-v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-Ga~~V  350 (426)
                       .|.. +  .++++.+++.+|..++..=    =|....|+-.-+++ |+..|
T Consensus       137 -Fpa~~~gG~~~lk~l~~~~~~ipvvai----GGI~~~N~~~~l~agga~~v  183 (224)
T 1vhc_A          137 -FPAEASGGVKMIKALLGPYAQLQIMPT----GGIGLHNIRDYLAIPNIVAC  183 (224)
T ss_dssp             -TTTTTTTHHHHHHHHHTTTTTCEEEEB----SSCCTTTHHHHHTSTTBCCE
T ss_pred             -eeCccccCHHHHHHHHhhCCCCeEEEE----CCcCHHHHHHHHhcCCCEEE
Confidence             3311 1  4678888887765555432    24455677777887 66655

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=96.42  E-value=0.054  Score=50.79  Aligned_cols=185  Identities=12%  Similarity=0.062  Sum_probs=104.5

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C--C----------------------hh
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P--N----------------------LK  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~--~----------------------~~  205 (426)
                      .+.++.+.++|++.||+..+..       .+.+++.+.++. .++++.++. +  +                      .+
T Consensus        26 ~~~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   97 (269)
T 3ngf_A           26 LERFRLAAEAGFGGVEFLFPYD-------FDADVIARELKQ-HNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDI   97 (269)
T ss_dssp             HHHHHHHHHTTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHH
Confidence            4566777889999999976421       245666666653 356655432 1  0                      12


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhcCCcEEEEEEeeec--CCCCCCCCHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVG--CPVEGAIPPSKV  279 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~----~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg--~pd~~r~~~~~l  279 (426)
                      .++.|.+.|++.|.+... .+      .+.+.    +...+.+.++.++|++.|+++.  +...-.  -|...-.+++.+
T Consensus        98 ~i~~A~~lGa~~v~~~~g-~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~n~~~~~~~~~~~~~~~  168 (269)
T 3ngf_A           98 ALHYALALDCRTLHAMSG-IT------EGLDRKACEETFIENFRYAADKLAPHGITVL--VEPLNTRNMPGYFIVHQLEA  168 (269)
T ss_dssp             HHHHHHHTTCCEEECCBC-BC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCCHHHH
T ss_pred             HHHHHHHcCCCEEEEccC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeCCcccCccchhcCHHHH
Confidence            356677889999988654 21      12233    3455566678888999998765  221000  011122466776


Q ss_pred             HHHHHHHHhCCCCEE-EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          280 AYVAKELHDMGCFEI-SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I-~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      .++++.+   +.+.+ ..-|+.=...-.  .+..+.++...+- -..+|++|..|                         
T Consensus       169 ~~l~~~v---~~~~vg~~~D~~h~~~~g--~d~~~~l~~~~~~-i~~vHl~D~~~-------------------------  217 (269)
T 3ngf_A          169 VGLVKRV---NRPNVAVQLDLYHAQIMD--GDLTRLIEKMNGA-FSHVQIASVPD-------------------------  217 (269)
T ss_dssp             HHHHHHH---CCTTEEEEEEHHHHHHHT--CCHHHHHHHTTTS-EEEEEECCTTT-------------------------
T ss_pred             HHHHHHh---CCCCCCeEEEhhhHHhhC--CCHHHHHHHhhhh-EEEEEEecCCC-------------------------
Confidence            6666554   43322 334543111100  1222333332233 47899999753                         


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          359 GCPYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       359 ecP~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                      .+  .+| .|..+...++..|+..|++.
T Consensus       218 r~--~~G-~G~id~~~~~~~L~~~gy~g  242 (269)
T 3ngf_A          218 RH--EPD-EGELNYPYLFSVLESVGYRG  242 (269)
T ss_dssp             CC--CTT-SSSBCHHHHHHHHHHTTCCS
T ss_pred             CC--CCC-CCccCHHHHHHHHHHcCCCc
Confidence            11  134 68999999999999988764

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=96.36  E-value=0.062  Score=53.16  Aligned_cols=200  Identities=17%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHH---hHhc----CCCc
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA---VRDL----EGAR  196 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~---i~~~----~~~~  196 (426)
                      +=|+.+|+   =||++.    ++.+..++.++.+.+.|.+.|++|.-+.... +.....+|+.+.   ++.+    +++.
T Consensus        45 MGIlNvTPDSFsdgg~~----~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG-~~v~~~eEl~Rv~pvI~~l~~~~~~vp  119 (318)
T 2vp8_A           45 MAIVNRTPDSFYDKGAT----FSDAAARDAVHRAVADGADVIDVGGVKAGPG-ERVDVDTEITRLVPFIEWLRGAYPDQL  119 (318)
T ss_dssp             EEEEC------------------CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred             EEEEeCCCCcccCCCcc----CCHHHHHHHHHHHHHCCCCEEEECCCcCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCe
Confidence            45666665   577664    5778889999999999999999996443212 222112333222   3322    3666


Q ss_pred             EEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-CCCCCCC
Q 014369          197 LPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIP  275 (426)
Q Consensus       197 l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-pd~~r~~  275 (426)
                      ++.=+.+.+-+++|+++|++.|.=.-...                  ..++++.++++|..+.  ++..-|. |..-...
T Consensus       120 ISIDT~~~~VaeaAl~aGa~iINDVsg~~------------------d~~m~~vaa~~g~~vV--lmh~~G~~p~tmq~~  179 (318)
T 2vp8_A          120 ISVDTWRAQVAKAACAAGADLINDTWGGV------------------DPAMPEVAAEFGAGLV--CAHTGGALPRTRPFR  179 (318)
T ss_dssp             EEEECSCHHHHHHHHHHTCCEEEETTSSS------------------STTHHHHHHHHTCEEE--EECC-----------
T ss_pred             EEEeCCCHHHHHHHHHhCCCEEEECCCCC------------------chHHHHHHHHhCCCEE--EECCCCCCccccccc
Confidence            66667788889999999999654321111                  1245556777887665  4543333 3211111


Q ss_pred             --------------HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCc----eEEE----
Q 014369          276 --------------PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVE----KLAV----  326 (426)
Q Consensus       276 --------------~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~----~i~~----  326 (426)
                                    .+++.+.++.+.++|++  .|.|==-+|.. +.++-.++++.+.+-    +|..    +..|    
T Consensus       180 ~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL~G~SrKsfig~~  259 (318)
T 2vp8_A          180 VSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGET  259 (318)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC--------
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCEEEEeCcchhhhhh
Confidence                          15666778888899986  55543333432 345555666665531    2321    1111    


Q ss_pred             ---EeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          327 ---HLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       327 ---H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                         -..+-..-.+|-+..|++.||++|.
T Consensus       260 ~g~~~~~r~~~t~a~~~~a~~~Ga~IvR  287 (318)
T 2vp8_A          260 LGVDLTERLEGTLAATALAAAAGARMFR  287 (318)
T ss_dssp             -------CHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCChHHhHHHHHHHHHHHHHCCCeEEE
Confidence               1122222334456667788888773

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=96.36  E-value=0.075  Score=49.87  Aligned_cols=152  Identities=18%  Similarity=0.131  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh-HhcCCCcEEEEe-CChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV-RDLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i-~~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.|.+.|++.||++.-. +       +..+.++.+ +..++..+.+-+ -+.+.++.|+++|++.|+.. .
T Consensus        36 ~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p-~  106 (225)
T 1mxs_A           36 REEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP-G  106 (225)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS-S
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeC-C
Confidence            55667899999999999999999522 1       223444433 355665554433 35588999999999999853 1


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                       .+                  .++++.++++|.....      |     -.+++++    ..+.++|+|.|.+       
T Consensus       107 -~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e~----~~A~~~Gad~vk~-------  145 (225)
T 1mxs_A          107 -IT------------------EDILEAGVDSEIPLLP------G-----ISTPSEI----MMGYALGYRRFKL-------  145 (225)
T ss_dssp             -CC------------------HHHHHHHHHCSSCEEC------E-----ECSHHHH----HHHHTTTCCEEEE-------
T ss_pred             -CC------------------HHHHHHHHHhCCCEEE------e-----eCCHHHH----HHHHHCCCCEEEE-------
Confidence             11                  2667788889987541      2     1235443    4456899999988       


Q ss_pred             CHHH-H--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEEe
Q 014369          304 TPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVD  351 (426)
Q Consensus       304 ~P~~-v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD  351 (426)
                      .|.. +  .++++.++..+|..++..=    =|....|+-.-+. +|++.|=
T Consensus       146 FPa~~~~G~~~lk~i~~~~~~ipvvai----GGI~~~N~~~~l~~~Ga~~v~  193 (225)
T 1mxs_A          146 FPAEISGGVAAIKAFGGPFGDIRFCPT----GGVNPANVRNYMALPNVMCVG  193 (225)
T ss_dssp             TTHHHHTHHHHHHHHHTTTTTCEEEEB----SSCCTTTHHHHHHSTTBCCEE
T ss_pred             ccCccccCHHHHHHHHhhCCCCeEEEE----CCCCHHHHHHHHhccCCEEEE
Confidence            4432 3  5778888887876565432    2455568888888 6888764

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=96.29  E-value=0.45  Score=44.65  Aligned_cols=207  Identities=10%  Similarity=-0.013  Sum_probs=112.4

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  202 (426)
                      |+-++-+...++++        .+.   .+.++.+.++|++.||+.....    +  .+.+++.+.++. .++++.++..
T Consensus        24 m~mklg~~~~~~~~--------~~~---~~~l~~~~~~G~~~vEl~~~~~----~--~~~~~~~~~l~~-~gl~v~~~~~   85 (287)
T 3kws_A           24 LELKLSFQEGIAPG--------ESL---NEKLDFMEKLGVVGFEPGGGGL----A--GRVNEIKQALNG-RNIKVSAICA   85 (287)
T ss_dssp             CCCEEEEETTSSCC--------SSH---HHHHHHHHHTTCCEEECBSTTC----G--GGHHHHHHHHTT-SSCEECEEEC
T ss_pred             ceeeEEEEecccCC--------CCH---HHHHHHHHHcCCCEEEecCCch----H--HHHHHHHHHHHH-cCCeEEEEec
Confidence            45556666666665        133   4567777899999999986521    1  234555555542 4566554431


Q ss_pred             ---------Ch-----------hhHHHHHHcCCCEEEEeccCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhcCCcEEE
Q 014369          203 ---------NL-----------KGFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRG  260 (426)
Q Consensus       203 ---------~~-----------~di~~a~~~Gv~~V~i~~~~Sd~~~~~--~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~  260 (426)
                               +.           +.++.|.+.|++.|.+...... +...  ......+...+.+.++.++|++.|+++. 
T Consensus        86 ~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~-~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~-  163 (287)
T 3kws_A           86 GFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNG-QVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVI-  163 (287)
T ss_dssp             CCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTT-CCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEE-
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCC-cCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE-
Confidence                     11           1356677789999888533111 0000  0001234566777788899999998765 


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH
Q 014369          261 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  338 (426)
Q Consensus       261 ~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT~G~~~-P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN  338 (426)
                       +...-..+...-.+++.+.++++.+   +.+.+ ..-||.=... -.+..+.++.+   .+- -..+|++|..+     
T Consensus       164 -lE~~~~~~~~~~~~~~~~~~ll~~v---~~~~vg~~~D~~h~~~~g~d~~~~l~~~---~~~-i~~vHlkD~~~-----  230 (287)
T 3kws_A          164 -FEPLNRKECFYLRQVADAASLCRDI---NNPGVRCMGDFWHMTWEETSDMGAFISG---GEY-LQHVHVASRKR-----  230 (287)
T ss_dssp             -ECCCCTTTCSSCCCHHHHHHHHHHH---CCTTEEEEEEHHHHHHHCSCHHHHHHHH---GGG-EEEEEECCTTT-----
T ss_pred             -EEecCcccCcccCCHHHHHHHHHHc---CCCCeeEEeehHHHHhcCCCHHHHHHHh---hhh-EEEEEeCCCCC-----
Confidence             2211000011123567766666544   43322 2345422110 01122333333   232 36789999751     


Q ss_pred             HHHHHHcCCCEEeecccCCCCCCCCCCCCCc--ccHHHHHHHHHhCCCC
Q 014369          339 ILISLQMGISTVDCSVAGLGGCPYAKGASGN--VATEDVVYMLSGLGVE  385 (426)
Q Consensus       339 aLaAl~aGa~~VD~Sv~GlGecP~a~graGN--a~lEevv~~L~~lG~~  385 (426)
                                          .+  .+| .|+  .+...++..|+..|++
T Consensus       231 --------------------r~--~pG-~G~d~id~~~i~~~L~~~gy~  256 (287)
T 3kws_A          231 --------------------RS--MPG-EDGDADNYINGFKGLKMIGYN  256 (287)
T ss_dssp             --------------------SC--STT-TTGGGCCCHHHHHHHHHTTCC
T ss_pred             --------------------CC--CCC-CCCCCcCHHHHHHHHHHcCCC
Confidence                                10  133 689  9999999999987765

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=96.29  E-value=0.19  Score=47.53  Aligned_cols=174  Identities=15%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcC-CCcEEEEeC----------C---hhhHHHH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLE-GARLPVLTP----------N---LKGFEAA  210 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~-~~~l~~l~~----------~---~~di~~a  210 (426)
                      +.++-..+++.+.+.|++.|.+..    .          ..+.+. ... ...+.+-.+          .   ...++.+
T Consensus        43 ~~~~~~~~~~~~~~~g~~~i~~~~----~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a  108 (273)
T 2qjg_A           43 GLIDIRKTVNDVAEGGANAVLLHK----G----------IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEA  108 (273)
T ss_dssp             TSSSHHHHHHHHHHHTCSEEEECH----H----------HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHHH
T ss_pred             chhhHHHHHHHHHhcCCCEEEeCH----H----------HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHH
Confidence            334445899999999999998632    1          111111 111 122211111          1   4578999


Q ss_pred             HHcCCCEE--EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          211 IAAGAKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       211 ~~~Gv~~V--~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      ++.|++.|  .+.....          +.++.++.+.++++.+++.|+++.+.+. ..|.......+++.+.++++.+.+
T Consensus       109 ~~~Ga~~v~~~l~~~~~----------~~~~~~~~~~~v~~~~~~~g~~viv~~~-~~G~~l~~~~~~~~~~~~a~~a~~  177 (273)
T 2qjg_A          109 IRMGADAVSIHVNVGSD----------EDWEAYRDLGMIAETCEYWGMPLIAMMY-PRGKHIQNERDPELVAHAARLGAE  177 (273)
T ss_dssp             HHTTCSEEEEEEEETST----------THHHHHHHHHHHHHHHHHHTCCEEEEEE-ECSTTCSCTTCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEEEecCCC----------CHHHHHHHHHHHHHHHHHcCCCEEEEeC-CCCcccCCCCCHhHHHHHHHHHHH
Confidence            99999999  5544321          3467788899999999999998865321 122110011456777777789999


Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc---CcHHHHHHHHHHcCCCEEee
Q 014369          289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY---GQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       289 ~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~---GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +|+|.|.+.-+   ..+    ++++.+++..+ +++-.|+=-+.   -.++.....++++||+.|-.
T Consensus       178 ~Gad~i~~~~~---~~~----~~l~~i~~~~~-ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          178 LGADIVKTSYT---GDI----DSFRDVVKGCP-APVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             TTCSEEEECCC---SSH----HHHHHHHHHCS-SCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             cCCCEEEECCC---CCH----HHHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            99999988743   233    34555555554 35767663332   22333366777899987644

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=96.24  E-value=0.27  Score=47.75  Aligned_cols=167  Identities=16%  Similarity=0.156  Sum_probs=101.4

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC-CCCccccc--cCHHHHHHHhHhc---CCCcE
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQL--ADARDVMEAVRDL---EGARL  197 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~--~D~~~v~~~i~~~---~~~~l  197 (426)
                      +=|+.+|+   -||++    .++.+..++.++.+.+.|.+.|++|.-+ .|...|..  .+.+.+...++.+   .++.+
T Consensus        18 mGilN~TpdSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~pi   93 (282)
T 1aj0_A           18 MGILNVTPDSFSDGGT----HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWI   93 (282)
T ss_dssp             EEEEECCTTTSCCCCC----CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             EEEEeCCCCccccccc----cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeE
Confidence            34566665   35544    4678888999999999999999999743 34322221  1112223333333   26667


Q ss_pred             EEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC--
Q 014369          198 PVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP--  275 (426)
Q Consensus       198 ~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~--  275 (426)
                      +.=+.+.+-+++|+++|++.|.=.-...                  ..++++.+++.|..+.  ++..-|.|..-...  
T Consensus        94 SIDT~~~~va~aAl~aGa~iINdvsg~~------------------d~~~~~~~a~~~~~vV--lmh~~G~p~tm~~~~~  153 (282)
T 1aj0_A           94 SVDTSKPEVIRESAKVGAHIINDIRSLS------------------EPGALEAAAETGLPVC--LMHMQGNPKTMQEAPK  153 (282)
T ss_dssp             EEECCCHHHHHHHHHTTCCEEEETTTTC------------------STTHHHHHHHHTCCEE--EECCSSCTTCCSCCCC
T ss_pred             EEeCCCHHHHHHHHHcCCCEEEECCCCC------------------CHHHHHHHHHhCCeEE--EEccCCCCccccccCc
Confidence            6667888899999999998775432111                  1245566778888776  44433444321111  


Q ss_pred             --------HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHH
Q 014369          276 --------PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMA  317 (426)
Q Consensus       276 --------~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~  317 (426)
                              .+++.+.++.+.++|+.  .|.|==-+|.. ++++-.++++.+..
T Consensus       154 y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k~~~~n~~ll~~l~~  206 (282)
T 1aj0_A          154 YDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAE  206 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGG
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccCHHHHHHHHHHHHH
Confidence                    57788888889999987  55553233332 34555666666653

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=96.17  E-value=0.025  Score=52.37  Aligned_cols=165  Identities=16%  Similarity=0.115  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEe---CC-hhhHHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLT---PN-LKGFEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~---~~-~~di~~a~~~Gv~~V~  219 (426)
                      .+.++-+++++.+ +.|++.+|+|++..      +....++++.+++. ++..+....   .. ..-++.+.++|++.|.
T Consensus        16 ~~~~~~~~~~~~~-~~~vd~ie~g~~~~------~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~   88 (218)
T 3jr2_A           16 TNLTDAVAVASNV-ASYVDVIEVGTILA------FAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWIT   88 (218)
T ss_dssp             SSHHHHHHHHHHH-GGGCSEEEECHHHH------HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHh-cCCceEEEeCcHHH------HhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEE
Confidence            4678889999997 56999999997421      11112455666644 555544321   12 2356888999999998


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--  297 (426)
                      +.....+               +.+.++++.++++|+.+.+.+   .+.     .+++.+.+    +.+.|+|.+.+.  
T Consensus        89 vh~~~~~---------------~~~~~~~~~~~~~g~~~~~d~---l~~-----~T~~~~~~----~~~~g~d~v~~~~~  141 (218)
T 3jr2_A           89 VSAAAHI---------------ATIAACKKVADELNGEIQIEI---YGN-----WTMQDAKA----WVDLGITQAIYHRS  141 (218)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHHTCEEEEEC---CSS-----CCHHHHHH----HHHTTCCEEEEECC
T ss_pred             EecCCCH---------------HHHHHHHHHHHHhCCccceee---eec-----CCHHHHHH----HHHcCccceeeeec
Confidence            8754322               223466777888898764211   221     23444333    345699976551  


Q ss_pred             ---CCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 ---DTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 ---DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                         .+.|. ..|..+ +.++.++.  +..+|.+    +.|--..|+-.++++||+.|
T Consensus       142 ~~~~~~g~~~~~~~l-~~i~~~~~--~~~pi~v----~GGI~~~~~~~~~~aGAd~v  191 (218)
T 3jr2_A          142 RDAELAGIGWTTDDL-DKMRQLSA--LGIELSI----TGGIVPEDIYLFEGIKTKTF  191 (218)
T ss_dssp             HHHHHHTCCSCHHHH-HHHHHHHH--TTCEEEE----ESSCCGGGGGGGTTSCEEEE
T ss_pred             cccccCCCcCCHHHH-HHHHHHhC--CCCCEEE----ECCCCHHHHHHHHHcCCCEE
Confidence               11132 233333 33444442  2334444    23444456667899999876

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=96.16  E-value=0.14  Score=50.23  Aligned_cols=196  Identities=14%  Similarity=0.054  Sum_probs=126.9

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe---CChhhHHH
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT---PNLKGFEA  209 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~~~~di~~  209 (426)
                      +.+.+..+.  ....+....++++-.+.+-++|=-.++..-++.+.. -...+....+ ..++.+....   ...+.+..
T Consensus        23 ~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~-~~~~~~~~A~-~~~VPVaLHlDHg~~~e~i~~  100 (306)
T 3pm6_A           23 RTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSL-LVRTAASACR-AASVPITLHLDHAQDPEIIKR  100 (306)
T ss_dssp             HHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTH-HHHHHHHHHH-HCSSCEEEEEEEECCHHHHHH
T ss_pred             HHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHH-HHHHHHHHHH-HCCCCEEEEcCCCCCHHHHHH
Confidence            345554433  468899999999999999997755433211111100 0111111122 2345554433   46788999


Q ss_pred             HHHc--------CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---------C
Q 014369          210 AIAA--------GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---------G  272 (426)
Q Consensus       210 a~~~--------Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---------~  272 (426)
                      |+++        |...|.+=.|.          .+.+|+++..++++++|+..|+.|++-+-..-|.+|.         -
T Consensus       101 ai~~~~~~~~~~GFtSVMiDgS~----------~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~  170 (306)
T 3pm6_A          101 AADLSRSETHEPGFDSIMVDMSH----------FSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGV  170 (306)
T ss_dssp             HHHTC------CCCSEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCB
T ss_pred             HHHhhhhccCCCCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccc
Confidence            9999        99888874332          3578999999999999999999999776655444432         2


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC----CH---HHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHH
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG----TP---GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~----~P---~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      .++|+...+++    +.|+|.  |+=++|..    .|   .==.++++.+++.++ .++|.+|+  --|..-.....|+.
T Consensus       171 yT~Peea~~Fv----~TgvD~--LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHG--gSG~p~e~i~~ai~  242 (306)
T 3pm6_A          171 LTTPEESEEFV----ATGINW--LAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHG--ADPFTKEIFEKCIE  242 (306)
T ss_dssp             CCCHHHHHHHH----TTTCSE--ECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECS--CTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHH----HcCCCE--EEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeC--CCCCCHHHHHHHHH
Confidence            57899887766    489994  44444432    22   112455677777763 55777766  45788889999999


Q ss_pred             cCCCEE
Q 014369          345 MGISTV  350 (426)
Q Consensus       345 aGa~~V  350 (426)
                      .|+.-|
T Consensus       243 ~GV~Ki  248 (306)
T 3pm6_A          243 RGVAKV  248 (306)
T ss_dssp             TTEEEE
T ss_pred             cCCeEE
Confidence            998755

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.16  E-value=0.11  Score=48.33  Aligned_cols=152  Identities=20%  Similarity=0.177  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh-HhcCCCcEEEE-eCChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV-RDLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i-~~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.|.+.|++.||++.-. +       +..+.++.+ +..++..+.+= +-..++++.|+++|++.|+.. .
T Consensus        26 ~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p-~   96 (214)
T 1wbh_A           26 KLEHAVPMAKALVAGGVRVLNVTLRT-E-------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP-G   96 (214)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEESCS-T-------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES-S
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCC-h-------hHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcC-C
Confidence            55667899999999999999999532 1       234455544 35565444332 234588999999999999854 1


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                       .+                  .++++.++++|..+..      |     -.+++++    ..+.++|+|.|.+       
T Consensus        97 -~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e~----~~A~~~Gad~v~~-------  135 (214)
T 1wbh_A           97 -LT------------------EPLLKAATEGTIPLIP------G-----ISTVSEL----MLGMDYGLKEFKF-------  135 (214)
T ss_dssp             -CC------------------HHHHHHHHHSSSCEEE------E-----ESSHHHH----HHHHHTTCCEEEE-------
T ss_pred             -CC------------------HHHHHHHHHhCCCEEE------e-----cCCHHHH----HHHHHCCCCEEEE-------
Confidence             12                  2677788889987642      2     1235553    3456899998888       


Q ss_pred             CHH-HH--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-CCCEEe
Q 014369          304 TPG-TV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVD  351 (426)
Q Consensus       304 ~P~-~v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-Ga~~VD  351 (426)
                      .|. .+  .++++.++..+|..++..=+    |....|+-.-+++ |+..|-
T Consensus       136 Fpa~~~gG~~~lk~i~~~~~~ipvvaiG----GI~~~n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          136 FPAEANGGVKALQAIAGPFSQVRFCPTG----GISPANYRDYLALKSVLCIG  183 (214)
T ss_dssp             TTTTTTTHHHHHHHHHTTCTTCEEEEBS----SCCTTTHHHHHTSTTBSCEE
T ss_pred             ecCccccCHHHHHHHhhhCCCCeEEEEC----CCCHHHHHHHHhcCCCeEEE
Confidence            221 11  46788888877765554322    4445677788887 666553

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=96.12  E-value=0.07  Score=51.55  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=107.2

Q ss_pred             EEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEe
Q 014369          128 KIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLT  201 (426)
Q Consensus       128 ~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~  201 (426)
                      .++++|.   .||.+.    .+.+..++.++.+.+.|.+.|++|.-++..     .+.+.+...++.   ..++.++.=+
T Consensus        15 EilN~Tpdsf~dg~~~----~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~-----eE~~rv~~vi~~l~~~~~~pisIDT   85 (271)
T 2yci_X           15 ERINGMFKDIREAILN----KDPRPIQEWARRQAEKGAHYLDVNTGPTAD-----DPVRVMEWLVKTIQEVVDLPCCLDS   85 (271)
T ss_dssp             EEEETTSHHHHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECCSCSS-----CHHHHHHHHHHHHHHHCCCCEEEEC
T ss_pred             EecCCChhhHHHhhhh----CCHHHHHHHHHHHHHCCCCEEEEcCCcCch-----hHHHHHHHHHHHHHHhCCCeEEEeC
Confidence            4777883   345543    567888999999999999999999755321     123344444443   3366677667


Q ss_pred             CChhhHHHHHHc--CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC----
Q 014369          202 PNLKGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP----  275 (426)
Q Consensus       202 ~~~~di~~a~~~--Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~----  275 (426)
                      .+.+-+++|+++  |.+.|.=.-. .               -+++.+++..++++|..+.  ++.. . +.....+    
T Consensus        86 ~~~~v~~aal~a~~Ga~iINdvs~-~---------------~d~~~~~~~~~a~~~~~vv--~m~~-d-~~G~p~t~~~~  145 (271)
T 2yci_X           86 TNPDAIEAGLKVHRGHAMINSTSA-D---------------QWKMDIFFPMAKKYEAAII--GLTM-N-EKGVPKDANDR  145 (271)
T ss_dssp             SCHHHHHHHHHHCCSCCEEEEECS-C---------------HHHHHHHHHHHHHHTCEEE--EESC-B-TTBCCCSHHHH
T ss_pred             CCHHHHHHHHHhCCCCCEEEECCC-C---------------ccccHHHHHHHHHcCCCEE--EEec-C-CCCCCCCHHHH
Confidence            788888999998  9887763211 0               1334567777888898665  3332 0 0111233    


Q ss_pred             HHHHHHHHHHHHhCCCC--EEEEcCCCCC--CCHHHHHHHHHHHHH---hc-CCceEEEEeCC
Q 014369          276 PSKVAYVAKELHDMGCF--EISLGDTIGV--GTPGTVVPMLEAVMA---VV-PVEKLAVHLHD  330 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad--~I~l~DT~G~--~~P~~v~~li~~l~~---~~-p~~~i~~H~HN  330 (426)
                      .+++.+.++.+.++|+.  .|.|==.+|.  -+.++-.++++.++.   .. |..++-+=.+|
T Consensus       146 ~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Sn  208 (271)
T 2yci_X          146 SQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSN  208 (271)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGG
T ss_pred             HHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCc
Confidence            45677778888899986  3655444443  144555566666553   34 44566554444

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=96.08  E-value=0.18  Score=46.67  Aligned_cols=200  Identities=14%  Similarity=0.059  Sum_probs=105.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe---C-C----------hhhHHHHHHcCCC
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT---P-N----------LKGFEAAIAAGAK  216 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~-~----------~~di~~a~~~Gv~  216 (426)
                      .+.++.+.++|++.||+.......+...-.+.+++.+.++. .++++.++.   + +          .+-++.|.+.|++
T Consensus        22 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~  100 (272)
T 2q02_A           22 EAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGAR  100 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHH-cCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            44566677899999999742110001011345566555553 456664432   1 1          1245667778999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHH-HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 014369          217 EVAIFASASEAFSKSNINCSIEDS-LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~-l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      .|.+......       ....+.. .+.+.++.++|++.|+++.  +... +.+...-.+++.+.++++.+-  .-=.+ 
T Consensus       101 ~v~~~~g~~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~-~~~~~~~~~~~~~~~l~~~v~--~~~g~-  167 (272)
T 2q02_A          101 ALVLCPLNDG-------TIVPPEVTVEAIKRLSDLFARYDIQGL--VEPL-GFRVSSLRSAVWAQQLIREAG--SPFKV-  167 (272)
T ss_dssp             EEEECCCCSS-------BCCCHHHHHHHHHHHHHHHHTTTCEEE--ECCC-CSTTCSCCCHHHHHHHHHHHT--CCCEE-
T ss_pred             EEEEccCCCc-------hhHHHHHHHHHHHHHHHHHHHcCCEEE--EEec-CCCcccccCHHHHHHHHHHhC--cCeEE-
Confidence            8887533211       0234566 7788888999999997654  2211 111112246677777666543  11122 


Q ss_pred             EcCCCCCCC--HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccH
Q 014369          296 LGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVAT  372 (426)
Q Consensus       296 l~DT~G~~~--P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-Na~l  372 (426)
                      .-||.=...  -.. .++++.+.   ..--..+|+||..+..         .+-..-|.-..-       +| .| +.+.
T Consensus       168 ~~D~~h~~~~~~~~-~~~~~~l~---~~~i~~vH~~D~~~~~---------~~~~~~~~~~~~-------~G-~G~~id~  226 (272)
T 2q02_A          168 LLDTFHHHLYEEAE-KEFASRID---ISAIGLVHLSGVEDTR---------PTEALADEQRIM-------LS-EKDVMQN  226 (272)
T ss_dssp             EEEHHHHHHCTTHH-HHHHHHCC---GGGEEEEEECBCCCCS---------CGGGCCGGGCBC-------CC-TTCSSCH
T ss_pred             EEEchHhhccCCCc-hhhhhhCC---HhHEEEEEeCCCcCCC---------Cchhcccccccc-------CC-CCCcccH
Confidence            236532211  011 13344332   2224678888865321         000000111111       22 44 7999


Q ss_pred             HHHHHHHHhCCCC
Q 014369          373 EDVVYMLSGLGVE  385 (426)
Q Consensus       373 Eevv~~L~~lG~~  385 (426)
                      ..++..|+..|++
T Consensus       227 ~~~~~~L~~~gy~  239 (272)
T 2q02_A          227 YQQVQRLENMGYR  239 (272)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999987775

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=96.08  E-value=0.12  Score=50.97  Aligned_cols=141  Identities=16%  Similarity=0.155  Sum_probs=90.7

Q ss_pred             cEEEeCCcc---cc--CCCCCCCCCH-HHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh---cCCCc
Q 014369          127 VKIVEVGPR---DG--LQNEKNTVPT-GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD---LEGAR  196 (426)
Q Consensus       127 V~I~D~TLR---DG--~Q~~~~~f~~-~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~---~~~~~  196 (426)
                      +.|+|+|+=   ||  .+.    .+. +..++.++.+.+.|.+.|.+|.-+ .|...|  .+.++..+.++.   ..++.
T Consensus        51 m~I~n~tpdsf~d~i~~~~----~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~--vs~eee~~vV~~v~~~~~vp  124 (310)
T 2h9a_B           51 LEVFDTPPTDWPDILVEPF----KDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQN--RSGAELAEVCKAVADAIDVP  124 (310)
T ss_dssp             EEEESSCCSSCCHHHHGGG----TTTTTCHHHHHHHHHHTTCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHHCSSC
T ss_pred             EEEeeCCCcccchhhhhhh----ccHHHHHHHHHHHHHHcCCcEEEEeCccCCCCCCC--CCHHHHHHHHHHHHHhCCce
Confidence            568999875   77  433    222 567888889999999999999743 343222  234455544443   23566


Q ss_pred             EEE-Ee----CChhhHHHHHHcCCC---EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          197 LPV-LT----PNLKGFEAAIAAGAK---EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       197 l~~-l~----~~~~di~~a~~~Gv~---~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      ++. =+    .+.+-+++|+++|.+   .|.=   +|.            +   +..+++..|+++|..+.  ++.    
T Consensus       125 lsI~DT~~~~~~~~V~eaal~aga~~k~iINd---vs~------------~---~~~~~~~~aa~~g~~vv--~m~----  180 (310)
T 2h9a_B          125 LMIIGCGVEEKDAEIFPVIGEALSGRNCLLSS---ATK------------D---NYKPIVATCMVHGHSVV--ASA----  180 (310)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHTTTSCCEEEE---ECT------------T---THHHHHHHHHHHTCEEE--EEC----
T ss_pred             EEEECCCCCCCCHHHHHHHHHhCCCCCCEEEE---CCC------------C---ccHHHHHHHHHhCCCEE--EEC----
Confidence            666 45    344568899999987   3332   222            0   23466677788898765  221    


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGC--FEISLGDTIG  301 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Ga--d~I~l~DT~G  301 (426)
                      +    .+.+++.+..+.+.++|+  +.|.|==.+|
T Consensus       181 ~----~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g  211 (310)
T 2h9a_B          181 P----LDINLSKQLNIMIMEMNLAPNRIIMDPLIG  211 (310)
T ss_dssp             S----SCHHHHHHHHHHHHTTTCCGGGEEEECCCC
T ss_pred             h----hHHHHHHHHHHHHHHCCCChhhEEEeCCCc
Confidence            1    157899999999999998  5677655555

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=96.07  E-value=0.3  Score=45.66  Aligned_cols=179  Identities=19%  Similarity=0.136  Sum_probs=115.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C----C----hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P----N----LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----~----~~di~~a~~~  213 (426)
                      .-+.++..++++...+.|+..|-+-    |.++|      ...+.++. .++++.+.+  |    +    ...++.|++.
T Consensus        15 ~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v~------~~~~~l~~-~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~   83 (220)
T 1ub3_A           15 TATLEEVAKAAEEALEYGFYGLCIP----PSYVA------WVRARYPH-APFRLVTVVGFPLGYQEKEVKALEAALACAR   83 (220)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECC----GGGHH------HHHHHCTT-CSSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH------HHHHHhCC-CCceEEEEecCCCCCCchHHHHHHHHHHHHc
Confidence            4588888899999999998877653    33322      22222221 245555444  2    1    1467899999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |++.|-+.+......     ....++.++.+..+++.+.+.+++|.  +      + ....+++.+...++.+.++|+|.
T Consensus        84 GAdevd~vinig~~~-----~g~~~~v~~ei~~v~~a~~~~~lkvI--l------e-t~~l~~e~i~~a~~ia~eaGADf  149 (220)
T 1ub3_A           84 GADEVDMVLHLGRAK-----AGDLDYLEAEVRAVREAVPQAVLKVI--L------E-TGYFSPEEIARLAEAAIRGGADF  149 (220)
T ss_dssp             TCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHSTTSEEEEE--C------C-GGGSCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCEEEecccchhhh-----CCCHHHHHHHHHHHHHHHcCCCceEE--E------e-cCCCCHHHHHHHHHHHHHhCCCE
Confidence            999999987654321     12456788888888888876555543  1      1 13356889999999999999998


Q ss_pred             EEEcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          294 ISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       294 I~l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      |--.=  +.|.++|+++..+.+.+...+|. ++.==.+ |+    ..+++=+++||++|=+|
T Consensus       150 VKTsTGf~~~gat~~dv~~m~~~vg~~v~V-kaaGGir-t~----~~al~~i~aGa~RiG~S  205 (220)
T 1ub3_A          150 LKTSTGFGPRGASLEDVALLVRVAQGRAQV-KAAGGIR-DR----ETALRMLKAGASRLGTS  205 (220)
T ss_dssp             EECCCSSSSCCCCHHHHHHHHHHHTTSSEE-EEESSCC-SH----HHHHHHHHTTCSEEEET
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHhhCCCCeE-EEECCCC-CH----HHHHHHHHCCCcccchh
Confidence            87652  23667899988877665322331 1111112 22    56666778999977554

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=96.06  E-value=0.45  Score=45.15  Aligned_cols=189  Identities=17%  Similarity=0.162  Sum_probs=122.1

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---
Q 014369          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---  202 (426)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---  202 (426)
                      .++|-|+=      +..-+.++..++++...+.|+..+-+-    |.|+|      ...+.++ -.++++.+.+  |   
T Consensus        29 ~~IDhTlL------~p~~t~~~i~~lc~eA~~~~~~aVcV~----p~~v~------~a~~~L~-~s~v~v~tVigFP~G~   91 (239)
T 3ngj_A           29 KYIDHTLL------KADATEEQIRKLCSEAAEYKFASVCVN----PTWVP------LCAELLK-GTGVKVCTVIGFPLGA   91 (239)
T ss_dssp             TTEEEEEC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------HHHHHHT-TSSCEEEEEESTTTCC
T ss_pred             hhcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEEC----HHHHH------HHHHHhC-CCCCeEEEEeccCCCC
Confidence            45788772      224688888899999999999877762    33332      2233332 2356666554  3   


Q ss_pred             C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 ~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      .     ...++.|++.|+++|-+.+.+....     ..+.+..++.+..+++.+...  .+-  +..    |. +..+.+
T Consensus        92 ~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~~~--~lK--VIl----Et-~~Lt~e  157 (239)
T 3ngj_A           92 TPSEVKAYETKVAVEQGAEEVDMVINIGMVK-----AKKYDDVEKDVKAVVDASGKA--LTK--VII----EC-CYLTNE  157 (239)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHHTTS--EEE--EEC----CG-GGSCHH
T ss_pred             CchHHHHHHHHHHHHcCCCEEEEEeehHHhc-----cccHHHHHHHHHHHHHHhcCC--ceE--EEE----ec-CCCCHH
Confidence            1     1367789999999999998765431     235667888888888887643  222  222    22 345788


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          278 KVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .+...++.+.++|+|-|--.--  .|.++++++..+-+.+...++     +-.=---- -...+++-+++||++|=+|
T Consensus       158 ei~~a~~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~~v~-----VKasGGIr-t~~da~~~i~aGA~riGtS  229 (239)
T 3ngj_A          158 EKVEVCKRCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGDKAL-----VKAAGGIR-TFDDAMKMINNGASRIGAS  229 (239)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGGGSE-----EEEESSCC-SHHHHHHHHHTTEEEEEES
T ss_pred             HHHHHHHHHHHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCCCce-----EEEeCCCC-CHHHHHHHHHhcccceecc
Confidence            8999999999999998876632  456788888776665543332     22211111 1277888889999988554

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=96.03  E-value=0.33  Score=47.37  Aligned_cols=202  Identities=17%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHH---HHhHhcC--CCcEE
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM---EAVRDLE--GARLP  198 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~---~~i~~~~--~~~l~  198 (426)
                      +=|+-+|+   =||++.    ++.+..++.++.+.+.|.+.|++|.-+..+.-+.....+|+.   ..++.+.  ++.++
T Consensus        26 MgilNvTPDSFsdgg~~----~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiS  101 (294)
T 2y5s_A           26 MGILNATPDSFSDGGRF----LARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLS  101 (294)
T ss_dssp             EEEEECCC--------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             EEEEeCCCCCCCCCCCc----CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEE
Confidence            34566665   566653    577888999999999999999999743211111121122332   2333333  56666


Q ss_pred             EEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-----C
Q 014369          199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-----A  273 (426)
Q Consensus       199 ~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-----r  273 (426)
                      .=+.+.+-+++|+++|++.|.=.-...                  ..++++.++++|..+.  ++..-|.|..-     .
T Consensus       102 IDT~~~~Va~aAl~aGa~iINdVsg~~------------------d~~m~~~~a~~~~~vV--lmh~~G~p~tm~~~~~~  161 (294)
T 2y5s_A          102 IDTYKPAVMRAALAAGADLINDIWGFR------------------QPGAIDAVRDGNSGLC--AMHMLGEPQTMQVGEPD  161 (294)
T ss_dssp             EECCCHHHHHHHHHHTCSEEEETTTTC------------------STTHHHHHSSSSCEEE--EECCCEETTTTEECCCC
T ss_pred             EECCCHHHHHHHHHcCCCEEEECCCCC------------------chHHHHHHHHhCCCEE--EECCCCCCccccccCCc
Confidence            666788889999999998765432110                  1255667788898765  45443434321     0


Q ss_pred             C-C-----HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CH-HHHHHHHHHHHHh------cCCceEEEEeCC-------
Q 014369          274 I-P-----PSKVAYVAKELHDMGCF--EISLGDTIGVG-TP-GTVVPMLEAVMAV------VPVEKLAVHLHD-------  330 (426)
Q Consensus       274 ~-~-----~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P-~~v~~li~~l~~~------~p~~~i~~H~HN-------  330 (426)
                      + +     .+++.+.++.+.++|++  .|.|==-+|.. +. ++-.++++.+.+-      .++.|+-+=.-|       
T Consensus       162 y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~l  241 (294)
T 2y5s_A          162 YGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAV  241 (294)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTCHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEecccHHhhhh
Confidence            1 2     46777788888899986  55543222322 34 5556666666542      223233331111       


Q ss_pred             ---Cc-----CcHHHHHHHHHHcCCCEEee
Q 014369          331 ---TY-----GQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       331 ---d~-----GlA~ANaLaAl~aGa~~VD~  352 (426)
                         +.     ..-.|-+..|++.|+++|.+
T Consensus       242 ~g~~~~~~R~~~t~a~~~~a~~~Ga~Ivrv  271 (294)
T 2y5s_A          242 IGGKPPLERVAASVAAALCAVERGAAIVRV  271 (294)
T ss_dssp             TTSCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCCCchhhhhHHHHHHHHHHHHcCCcEEEc
Confidence               11     22345556677888888743

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=96.00  E-value=0.28  Score=47.98  Aligned_cols=200  Identities=15%  Similarity=0.150  Sum_probs=114.5

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHh---Hhc---CCCc
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV---RDL---EGAR  196 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i---~~~---~~~~  196 (426)
                      +-|+.+|+   -||.+    .++.+..++.++.+.+.|.+.|++|.-+. |...+ ....+++.+.+   +.+   .++.
T Consensus        43 MgilNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~-v~~~eE~~RvvpvI~~l~~~~~vp  117 (297)
T 1tx2_A           43 MGILNVTPDSFSDGGS----YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK-VSVEEEIKRVVPMIQAVSKEVKLP  117 (297)
T ss_dssp             EEECCCCCCTTCSSCB----HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCC-CCHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             EEEEeCCCCccccCCc----cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCce
Confidence            45666666   45544    45778889999999999999999996432 32111 11123332222   322   2667


Q ss_pred             EEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC-
Q 014369          197 LPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-  275 (426)
Q Consensus       197 l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~-  275 (426)
                      ++.=+.+.+-+++|+++|++.|.=. +...                ...++++.+++.|..+.  ++..-|.|. + .+ 
T Consensus       118 iSIDT~~~~V~~aAl~aGa~iINdv-sg~~----------------~d~~m~~~aa~~g~~vV--lmh~~G~p~-y-~d~  176 (297)
T 1tx2_A          118 ISIDTYKAEVAKQAIEAGAHIINDI-WGAK----------------AEPKIAEVAAHYDVPII--LMHNRDNMN-Y-RNL  176 (297)
T ss_dssp             EEEECSCHHHHHHHHHHTCCEEEET-TTTS----------------SCTHHHHHHHHHTCCEE--EECCCSCCC-C-SSH
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEEEC-CCCC----------------CCHHHHHHHHHhCCcEE--EEeCCCCCC-c-chH
Confidence            7777788888999999999877432 2100                01245566778887765  443323332 1 11 


Q ss_pred             ----HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHhc-CCceEEEEeC--------------CCcC
Q 014369          276 ----PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAVV-PVEKLAVHLH--------------DTYG  333 (426)
Q Consensus       276 ----~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~~-p~~~i~~H~H--------------Nd~G  333 (426)
                          .+++.+.++.+.++|++  .|.|==.+|.. +.++-.++++.+..-- .+.|+-+=..              +-..
T Consensus       177 v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pvl~G~Srksfig~~~g~~~~~r~~  256 (297)
T 1tx2_A          177 MADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLE  256 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCCGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEeccchhhhhhcCCCHHHhHH
Confidence                26777788888899987  55553233322 3455566666665321 1223333222              1222


Q ss_pred             cHHHHHHHHHHcCCCEEee
Q 014369          334 QSLPNILISLQMGISTVDC  352 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~VD~  352 (426)
                      -.++.+..|+..||++|.+
T Consensus       257 ~t~a~~~~a~~~ga~Ivrv  275 (297)
T 1tx2_A          257 GTGATVCLGIEKGCEFVRV  275 (297)
T ss_dssp             HHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHCCCcEEEe
Confidence            3344666677888988855

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=95.97  E-value=0.28  Score=49.11  Aligned_cols=178  Identities=15%  Similarity=0.114  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC-----CCCc--c-c--------------cccCHHHHHHHhHh--cCCCcEEEEe
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV-----SPKW--V-P--------------QLADARDVMEAVRD--LEGARLPVLT  201 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~--~-p--------------~~~D~~~v~~~i~~--~~~~~l~~l~  201 (426)
                      +.+..+++++...++|.+.+=.+.+-     ++..  + +              .+ ..+......+.  -.++.+..-.
T Consensus        33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l-~~e~~~~L~~~~~~~Gi~~~st~  111 (349)
T 2wqp_A           33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCAL-NEEDEIKLKEYVESKGMIFISTL  111 (349)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCC-CHHHHHHHHHHHHHhCCeEEEee
Confidence            88999999999999999999998541     2221  1 0              01 11222222221  2344444444


Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -...+++...+.+++.+.|.-.  +.   .|        +    .+++++-+.|.+|-  ++       .+..+.+++..
T Consensus       112 ~d~~svd~l~~~~v~~~KI~S~--~~---~n--------~----~LL~~va~~gkPvi--Ls-------tGmat~~Ei~~  165 (349)
T 2wqp_A          112 FSRAAALRLQRMDIPAYKIGSG--EC---NN--------Y----PLIKLVASFGKPII--LS-------TGMNSIESIKK  165 (349)
T ss_dssp             CSHHHHHHHHHHTCSCEEECGG--GT---TC--------H----HHHHHHHTTCSCEE--EE-------CTTCCHHHHHH
T ss_pred             CCHHHHHHHHhcCCCEEEECcc--cc---cC--------H----HHHHHHHhcCCeEE--EE-------CCCCCHHHHHH
Confidence            5788899888899999998632  11   11        1    45556666798876  33       24568999999


Q ss_pred             HHHHHHhCCCCEEEEcCCCCCCCHHHHHHH--HHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          282 VAKELHDMGCFEISLGDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT~G~~~P~~v~~l--i~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .++.+.+.|.+.+-+-=+.++=+|....+|  |..+++.+|..+|++=-|-   +|.+-+++|+.+||++|+.=
T Consensus       166 Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt---~G~~~~~AAvAlGA~iIEkH  236 (349)
T 2wqp_A          166 SVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHT---LDNYACLGAVALGGSILERH  236 (349)
T ss_dssp             HHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCS---SSSHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCC---CcHHHHHHHHHhCCCEEEeC
Confidence            999999999854443334455445454444  8888999865688885554   34788999999999988543

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=95.94  E-value=0.18  Score=46.52  Aligned_cols=184  Identities=10%  Similarity=0.016  Sum_probs=98.9

Q ss_pred             HHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C-------------C-----------hhhH
Q 014369          153 LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P-------------N-----------LKGF  207 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~-------------~-----------~~di  207 (426)
                      .++.+.++|++.||+..+..       .+.+++.+.++. .++++.++. +             +           .+.+
T Consensus        20 ~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 1k77_A           20 RFAAARKAGFDAVEFLFPYN-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLAL   91 (260)
T ss_dssp             HHHHHHHHTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEecCCCC-------CCHHHHHHHHHH-cCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHH
Confidence            44556677999999976321       245555555553 345555432 1             0           1235


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhcCCcEEEEEEeeecC--CCCCCCCHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--PVEGAIPPSKVAY  281 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~----~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~--pd~~r~~~~~l~~  281 (426)
                      +.|.+.|++.|.+.....+      -+.+.    +...+.+.++.++|++.|+++.  +...-..  |...-.+++.+.+
T Consensus        92 ~~a~~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~~~~~~~~~~~~~~~~~~~  163 (260)
T 1k77_A           92 EYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRIL--VEALSPGVKPHYLFSSQYQALA  163 (260)
T ss_dssp             HHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCSHHHHHH
T ss_pred             HHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCCccCCCcCccCCHHHHHH
Confidence            6677889999887543211      01233    3455666777888999998654  3211000  1112245666666


Q ss_pred             HHHHHHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          282 VAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       282 ~~~~l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      +++.+   +.+ .=..-||.=...-.  .+..+.+++..+- -..+|+||..|                         .+
T Consensus       164 l~~~~---~~~~~g~~~D~~h~~~~~--~d~~~~l~~~~~~-i~~vH~~D~~~-------------------------r~  212 (260)
T 1k77_A          164 IVEEV---ARDNVFIQLDTFHAQKVD--GNLTHLIRDYAGK-YAHVQIAGLPD-------------------------RH  212 (260)
T ss_dssp             HHHHH---CCTTEEEEEEHHHHHHHT--CCHHHHHHHTTTS-EEEEEECCTTT-------------------------CC
T ss_pred             HHHHh---CCCCEEEEeeHHHHHhhC--CCHHHHHHHhhhh-eeEEEECCCCC-------------------------CC
Confidence            66544   332 22234542111000  1122233332233 47789988753                         11


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                        .+| .|..+...++..|+..|++.
T Consensus       213 --~~G-~G~id~~~~~~~L~~~gy~g  235 (260)
T 1k77_A          213 --EPD-DGEINYPWLFRLFDEVGYQG  235 (260)
T ss_dssp             --CSS-SSSSCHHHHHHHHHHTTCCS
T ss_pred             --CCC-CCccCHHHHHHHHHHcCCCc
Confidence              133 68899999999999877763

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.94  E-value=0.3  Score=47.80  Aligned_cols=239  Identities=13%  Similarity=0.115  Sum_probs=130.3

Q ss_pred             EEeCC----ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCH-HHHHHHhHhc------CCCcE
Q 014369          129 IVEVG----PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA-RDVMEAVRDL------EGARL  197 (426)
Q Consensus       129 I~D~T----LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~-~~v~~~i~~~------~~~~l  197 (426)
                      .+.+|    ++||.+.    .+.+..++.++.+.+.|.+.|++|....+      .+. +++.+.++.+      .++.+
T Consensus        18 riNvTg~~sf~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIg~g~~~------v~~~eem~rvv~~i~~~~~~~~vpi   87 (300)
T 3k13_A           18 RCNVAGSRKFLRLVNE----KKYDEALSIARQQVEDGALVIDVNMDDGL------LDARTEMTTFLNLIMSEPEIARVPV   87 (300)
T ss_dssp             EEETTTCHHHHHHHHT----TCHHHHHHHHHHHHHTTCSEEEEECCCTT------SCHHHHHHHHHHHHHTCHHHHTSCE
T ss_pred             eccCCCCHHHHHHHhc----CCHHHHHHHHHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHhhhcCCCeE
Confidence            44666    6777775    47799999999999999999999974322      132 3333333322      34555


Q ss_pred             EEEeCChhhHHHHHH--cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCCCC
Q 014369          198 PVLTPNLKGFEAAIA--AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGA  273 (426)
Q Consensus       198 ~~l~~~~~di~~a~~--~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~~r  273 (426)
                      +.=+.+.+-+++|++  .|.+.|.=. +..+          .++   ++.+++..++++|..+.  ++..  -|.|....
T Consensus        88 sIDT~~~~V~eaaL~~~~Ga~iINdI-s~~~----------~d~---~~~~~~~l~a~~ga~vV--~mh~d~~G~p~t~~  151 (300)
T 3k13_A           88 MIDSSKWEVIEAGLKCLQGKSIVNSI-SLKE----------GEE---VFLEHARIIKQYGAATV--VMAFDEKGQADTAA  151 (300)
T ss_dssp             EEECSCHHHHHHHHHHCSSCCEEEEE-CSTT----------CHH---HHHHHHHHHHHHTCEEE--EESEETTEECCSHH
T ss_pred             EEeCCCHHHHHHHHHhcCCCCEEEeC-Cccc----------CCh---hHHHHHHHHHHhCCeEE--EEeeCCCCCCCCHH
Confidence            555677788899998  688755432 2211          012   23466677788898765  3432  12232111


Q ss_pred             CCHHHHHHHHHHH-HhCCC--CEEEEcCC---CCCCCHH------HHHHHHHHHHHhcCCceEEEEeCCC-cCcH-----
Q 014369          274 IPPSKVAYVAKEL-HDMGC--FEISLGDT---IGVGTPG------TVVPMLEAVMAVVPVEKLAVHLHDT-YGQS-----  335 (426)
Q Consensus       274 ~~~~~l~~~~~~l-~~~Ga--d~I~l~DT---~G~~~P~------~v~~li~~l~~~~p~~~i~~H~HNd-~GlA-----  335 (426)
                      ...+...++.+.+ .++|+  +.|.+==-   +|....+      ++-+-++.+++.+|..++-+=..|- +|+-     
T Consensus       152 ~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~  231 (300)
T 3k13_A          152 RKIEVCERAYRLLVDKVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYI  231 (300)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcch
Confidence            1122333444554 67898  34554222   3333222      3444556666678765665544442 5552     


Q ss_pred             -----HHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHH
Q 014369          336 -----LPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKH  403 (426)
Q Consensus       336 -----~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~  403 (426)
                           .+-...|+++|.+  +||.+-..+         ....+-|+.-..... ++.. .=..+.|.++++.++..
T Consensus       232 R~~~n~~fl~~ai~~Gld~~Ivn~~~~~~---------~~~i~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~  297 (300)
T 3k13_A          232 REAMHAVFLYHAIQQGMDMGIVNPGTSVL---------YSDIPADTLEKIEDVVLNRR-PDAAERLIELAEALKET  297 (300)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEECCC-CCC---------GGGSCHHHHHHHHHHHTTCS-TTHHHHHHHHHHHHC--
T ss_pred             hHHHHHHHHHHHHHcCCCEEecCcchhhH---------HhhcCHHHHHHHHHHHhCCC-cchHHHHHHHHHHHhhc
Confidence                 1234567899988  555554432         223443432222221 3332 12367888877776543

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=95.93  E-value=0.3  Score=46.12  Aligned_cols=186  Identities=12%  Similarity=0.102  Sum_probs=118.8

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CC-
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN-  203 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~-  203 (426)
                      +..+|-|+=      +..-+.++..++++...+.|+..|-+-    |.|+       ...+.++..+++++.+.+  |. 
T Consensus        21 ~~~iDht~L------~p~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v-------~a~~~l~~~~~v~v~tvigFP~G   83 (234)
T 1n7k_A           21 ASRIDSTLL------SPRATEEDVRNLVREASDYGFRCAVLT----PVYT-------VKISGLAEKLGVKLCSVIGFPLG   83 (234)
T ss_dssp             HTTEEEECC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----HHHH-------HHHHHHHHHHTCCEEEEESTTTC
T ss_pred             HHHhceecc------CCCCCHHHHHHHHHHHHHhCCCEEEEc----hHHh-------eeehHhCCCCCceEEEEeCCCCC
Confidence            445677661      234588888999999999999888763    1111       112223222256777665  31 


Q ss_pred             -------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH
Q 014369          204 -------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       204 -------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                             ...++.|++.|++.|-+.+.....         .++.++.+..+++.+.+.|+.+-+  ....     ...++
T Consensus        84 ~~~~~~k~~e~~~Av~~GAdEID~vinig~~---------~~~v~~ei~~v~~a~~~~g~~lKv--IlEt-----~~L~~  147 (234)
T 1n7k_A           84 QAPLEVKLVEAQTVLEAGATELDVVPHLSLG---------PEAVYREVSGIVKLAKSYGAVVKV--ILEA-----PLWDD  147 (234)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECCCGGGC---------HHHHHHHHHHHHHHHHHTTCEEEE--ECCG-----GGSCH
T ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEeccchHH---------HHHHHHHHHHHHHHHhhcCCeEEE--EEec-----cCCCH
Confidence                   146789999999999998765543         226788888889999888886642  2211     23457


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCC---CCCCHHHHHHHHHHHHHhcCCceEEEEe--CCCcCcHHHHHHHHHHcCCCEEe
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~---G~~~P~~v~~li~~l~~~~p~~~i~~H~--HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +.+...++.+.++|+|.|--.-..   |.++++++.-  +++++.++ .+|-.=+  + +    ...+++=+++|+++|=
T Consensus       148 e~i~~a~ria~eaGADfVKTsTG~~~~~gAt~~dv~l--~~m~~~v~-v~VKaaGGir-t----~~~al~~i~aGa~RiG  219 (234)
T 1n7k_A          148 KTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRL--ASLAKPLG-MGVKASGGIR-S----GIDAVLAVGAGADIIG  219 (234)
T ss_dssp             HHHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHH--HHHHGGGT-CEEEEESSCC-S----HHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCHHHHHH--HHHHHHHC-CCEEEecCCC-C----HHHHHHHHHcCccccc
Confidence            889999999999999988775321   4456777554  11333333 2222211  2 2    3667777799999875


Q ss_pred             ec
Q 014369          352 CS  353 (426)
Q Consensus       352 ~S  353 (426)
                      +|
T Consensus       220 ~S  221 (234)
T 1n7k_A          220 TS  221 (234)
T ss_dssp             ET
T ss_pred             hH
Confidence            44

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=95.93  E-value=0.064  Score=50.81  Aligned_cols=166  Identities=11%  Similarity=-0.006  Sum_probs=102.9

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCCh-hhHHHHHHcCCCEEEEeccCChHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL-KGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~-~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      .+-++.+.+.|++.+++...- ..++|.+.-...+.+.++...+..+..++.+. .-++.+.++|++.|.+..-..+   
T Consensus        29 ~~~i~~~~~~gad~lhvDvmD-G~fvpn~t~G~~~v~~lr~~~~~DvhLMv~~p~~~i~~~~~aGAd~itvH~ea~~---  104 (237)
T 3cu2_A           29 NEEVTTLLENQINVLHFDIAD-GQFSSLFTVGAIGIKYFPTHCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYH---  104 (237)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEB-SSSSSCBCBCTHHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTCSEEEEETTCTT---
T ss_pred             HHHHHHHHHcCCCEEEEEEec-CccccchhhhHHHHHHHhhhCCCCeEEEEECHHHHHHHHHHcCCCEEEEecCCcc---
Confidence            344777889999987664311 12234443333455555543211444455554 5689999999999777654432   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhc---------CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVL---------SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----  296 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~---------G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----  296 (426)
                                   ...+.++.++++         |+++.+.+.     |.   ++.+.+.++.     .++|.|.+    
T Consensus       105 -------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~-----p~---Tp~~~l~~~l-----~~~D~vlvMsv~  158 (237)
T 3cu2_A          105 -------------DFALTIEWLAKQKTTYANQVYPVLIGACLC-----PE---TPISELEPYL-----DQIDVIQLLTLD  158 (237)
T ss_dssp             -------------SHHHHHHHHTTCEEEETTEEEECEEEEEEC-----TT---SCGGGGTTTT-----TTCSEEEEESEE
T ss_pred             -------------cHHHHHHHHHhcccccccccCCceEEEEEe-----CC---ChHHHHHHHh-----hcCceeeeeeec
Confidence                         234778888999         888775442     21   2333333322     26887755    


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHH--cCCCEE
Q 014369          297 GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQ--MGISTV  350 (426)
Q Consensus       297 ~DT~G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~--aGa~~V  350 (426)
                      +-..|...+....+.++.+++..+    ..+|++    |-|.-..|+-..++  +||+.+
T Consensus       159 pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~v----dGGI~~~~~~~~~~~~aGad~~  214 (237)
T 3cu2_A          159 PRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI----DGSMTLELAKYFKQGTHQIDWL  214 (237)
T ss_dssp             TTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEE----ESSCCHHHHHHHHHSSSCCCCE
T ss_pred             cCcCCeecChhHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHhCCCCcEE
Confidence            334455456667777778877663    235665    78899999999999  999965

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=95.92  E-value=0.26  Score=47.25  Aligned_cols=171  Identities=13%  Similarity=0.113  Sum_probs=100.3

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHH
Q 014369          134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAA  210 (426)
Q Consensus       134 LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a  210 (426)
                      +.||.+.    .+.+..++.++.+.+.|.+.|++|..+.+     ....+++.+.++.   ..++.++.=+.+.+-+++|
T Consensus        15 Fsdgg~~----~~~~~a~~~a~~~v~~GAdiIDIg~g~~~-----v~~~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aA   85 (262)
T 1f6y_A           15 IKRAIQE----RDPAPVQEWARRQEEGGARALDLNVGPAV-----QDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAG   85 (262)
T ss_dssp             HHHHHHH----TCHHHHHHHHHHHHHHTCSEEEEBCC---------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred             HHHhhhc----CCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CChHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHH
Confidence            5566553    57888999999999999999999974321     1123444444443   2355566556777888999


Q ss_pred             HHc--CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHH
Q 014369          211 IAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       211 ~~~--Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +++  |.+.|.=. +..            +   +.+.+++..++++|..+.  ++..  -|.|......++++.+.++.+
T Consensus        86 l~a~~Ga~iINdv-s~~------------~---d~~~~~~~~~a~~~~~vv--lmh~~~~G~p~t~~~~~~~~~~~~~~a  147 (262)
T 1f6y_A           86 LKKCKNRAMINST-NAE------------R---EKVEKLFPLAVEHGAALI--GLTMNKTGIPKDSDTRLAFAMELVAAA  147 (262)
T ss_dssp             HHHCSSCEEEEEE-CSC------------H---HHHHHHHHHHHHTTCEEE--EESCCSSCSCSSHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCCEEEEC-CCC------------c---ccHHHHHHHHHHhCCcEE--EEcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            998  87766522 110            1   234466677788898654  4432  122221111246667788888


Q ss_pred             HhCCCC--EEEEcCCCC---CC--CHHHHHHHHHHHHHhc-CCceEEEEeCCC
Q 014369          287 HDMGCF--EISLGDTIG---VG--TPGTVVPMLEAVMAVV-PVEKLAVHLHDT  331 (426)
Q Consensus       287 ~~~Gad--~I~l~DT~G---~~--~P~~v~~li~~l~~~~-p~~~i~~H~HNd  331 (426)
                      .++|++  .|.|==.+|   ..  ...++-+.++.+++.+ |+.|+-+=.+|-
T Consensus       148 ~~~Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srk  200 (262)
T 1f6y_A          148 DEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNV  200 (262)
T ss_dssp             HHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGG
T ss_pred             HHCCCCcccEEEeCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecCC
Confidence            899985  455433333   21  1234445556666655 555666644443

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=95.88  E-value=0.26  Score=49.97  Aligned_cols=178  Identities=12%  Similarity=0.112  Sum_probs=116.5

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC-----CCCc--c--c--------------cc--cCHHHHHHHhHhcCCCcEEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV-----SPKW--V--P--------------QL--ADARDVMEAVRDLEGARLPVL  200 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~--~--p--------------~~--~D~~~v~~~i~~~~~~~l~~l  200 (426)
                      +.++.+++++...++|.+.|=.+.+-     +|..  +  +              .+  ...+++.+..   ...-+..+
T Consensus        42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~---~~~Gi~~~  118 (385)
T 1vli_A           42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYC---REKQVIFL  118 (385)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHH---HHTTCEEE
T ss_pred             cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHH---HHcCCcEE
Confidence            88999999999999999999998542     2321  1  0              01  1111111111   12233344


Q ss_pred             e--CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          201 T--PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       201 ~--~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                      +  -...+++...+.+++.+.|.-.  +.   .|        +    .+++++-+.|.+|-  ++       .+..+.++
T Consensus       119 stpfD~~svd~l~~~~vd~~KIgS~--~~---~N--------~----pLL~~va~~gKPVi--LS-------tGmaTl~E  172 (385)
T 1vli_A          119 STVCDEGSADLLQSTSPSAFKIASY--EI---NH--------L----PLLKYVARLNRPMI--FS-------TAGAEISD  172 (385)
T ss_dssp             CBCCSHHHHHHHHTTCCSCEEECGG--GT---TC--------H----HHHHHHHTTCSCEE--EE-------CTTCCHHH
T ss_pred             EccCCHHHHHHHHhcCCCEEEECcc--cc---cC--------H----HHHHHHHhcCCeEE--EE-------CCCCCHHH
Confidence            3  3678888888889999988632  11   11        1    45566666798886  33       24568999


Q ss_pred             HHHHHHHHHhCCCCEEEEcC-CCCCCCHHHHHHH--HHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          279 VAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~D-T~G~~~P~~v~~l--i~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      +...++.+.+.|...|.|+- +.++=+|....+|  |..+++.+|..+|++=-|-. |- .+-+++|+.+||++|+.=+
T Consensus       173 i~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~-G~-~~~~~AAvAlGA~iIEkHf  249 (385)
T 1vli_A          173 VHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSE-HP-TEAPCAAVRLGAKLIEKHF  249 (385)
T ss_dssp             HHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCS-SS-SHHHHHHHHTTCSEEEEEB
T ss_pred             HHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCC-Cc-hHHHHHHHHcCCCEEEeCC
Confidence            99999999999986555532 4445455555444  88889998656888865652 32 7888999999999886543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.88  E-value=0.23  Score=46.63  Aligned_cols=157  Identities=15%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE------------EeCChhhHHHHHH
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV------------LTPNLKGFEAAIA  212 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~------------l~~~~~di~~a~~  212 (426)
                      .+.+...++++...+.|..-|+++.             .+.++.+++..+..+..            +.+..++++.+.+
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~   99 (229)
T 3q58_A           33 DKPEIVAAMAQAAASAGAVAVRIEG-------------IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQ   99 (229)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHCCCcEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHH
Confidence            3677889999999999999999974             13345565443444322            2245567899999


Q ss_pred             cCCCEEEEeccC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          213 AGAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       213 ~Gv~~V~i~~~~--Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      +|+|.|.+-...  ++               +.+.+++++++++|+.+.+.+           .+.+    .++.+.++|
T Consensus       100 aGad~I~l~~~~~~~p---------------~~l~~~i~~~~~~g~~v~~~v-----------~t~e----ea~~a~~~G  149 (229)
T 3q58_A          100 AGADIIAFDASFRSRP---------------VDIDSLLTRIRLHGLLAMADC-----------STVN----EGISCHQKG  149 (229)
T ss_dssp             HTCSEEEEECCSSCCS---------------SCHHHHHHHHHHTTCEEEEEC-----------SSHH----HHHHHHHTT
T ss_pred             cCCCEEEECccccCCh---------------HHHHHHHHHHHHCCCEEEEec-----------CCHH----HHHHHHhCC
Confidence            999988765432  11               134577788888898775321           2333    356677899


Q ss_pred             CCEEEE--cC-CCC--CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEee
Q 014369          291 CFEISL--GD-TIG--VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDC  352 (426)
Q Consensus       291 ad~I~l--~D-T~G--~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~  352 (426)
                      +|.|.+  -+ |.+  ...| . .++++.+++.  ..++-.=    -|.. ..++..++++||+.|=+
T Consensus       150 ad~Ig~~~~g~t~~~~~~~~-~-~~li~~l~~~--~ipvIA~----GGI~t~~d~~~~~~~GadgV~V  209 (229)
T 3q58_A          150 IEFIGTTLSGYTGPITPVEP-D-LAMVTQLSHA--GCRVIAE----GRYNTPALAANAIEHGAWAVTV  209 (229)
T ss_dssp             CSEEECTTTTSSSSCCCSSC-C-HHHHHHHHTT--TCCEEEE----SSCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEecCccCCCCCcCCCC-C-HHHHHHHHHc--CCCEEEE----CCCCCHHHHHHHHHcCCCEEEE
Confidence            999953  11 111  1122 1 2556666654  2233332    2443 57888888999987643

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=95.75  E-value=1.5  Score=42.16  Aligned_cols=223  Identities=13%  Similarity=0.088  Sum_probs=138.9

Q ss_pred             CccEEEeCCccccCCCCCCCC---CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHH---hHhc-CCCcE
Q 014369          125 RFVKIVEVGPRDGLQNEKNTV---PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA---VRDL-EGARL  197 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f---~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~---i~~~-~~~~l  197 (426)
                      +.|+|-++++-+|.-..-..+   +.++.+..++.+.+.|.|.||+=.-.-.    ...+.+++.+.   +|+. .+..+
T Consensus        26 ~~v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~----~~~~~~~v~~~l~~lr~~~~~~Pi  101 (276)
T 3o1n_A           26 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFA----NVTTAESVLEAAGAIREIITDKPL  101 (276)
T ss_dssp             CCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCT----TTTCHHHHHHHHHHHHHHCCSSCE
T ss_pred             eEEEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEecccc----ccCcHHHHHHHHHHHHHhcCCCCE
Confidence            358888888888754432222   3455566667777789999999642111    11233444443   4432 35555


Q ss_pred             EEEeCCh--------------hhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          198 PVLTPNL--------------KGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       198 ~~l~~~~--------------~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      ..-+|..              +=++.+++.| ++.|-|-....+               +.+.++++.|++.|.+|.+..
T Consensus       102 I~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~---------------~~~~~l~~~a~~~~~kvI~S~  166 (276)
T 3o1n_A          102 LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGD---------------DEVKATVGYAHQHNVAVIMSN  166 (276)
T ss_dssp             EEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCH---------------HHHHHHHHHHHhCCCEEEEEe
Confidence            4444421              1246677888 899999765433               234577788888898886433


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEeCCCcCcHHHHH
Q 014369          263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA---VVPVEKLAVHLHDTYGQSLPNI  339 (426)
Q Consensus       263 ~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~---~~p~~~i~~H~HNd~GlA~ANa  339 (426)
                      =. |    ....+.+.+.+..+.+.++|||.+-|+=+  .-.+.++..+.....+   ..+..|+..-.=-.  +|.-.-
T Consensus       167 Hd-f----~~tP~~~el~~~~~~~~~~GaDIvKia~~--a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~--~G~~SR  237 (276)
T 3o1n_A          167 HD-F----HKTPAAEEIVQRLRKMQELGADIPKIAVM--PQTKADVLTLLTATVEMQERYADRPIITMSMSK--TGVISR  237 (276)
T ss_dssp             EE-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSG--GGTHHH
T ss_pred             ec-C----CCCcCHHHHHHHHHHHHHcCCCEEEEEec--CCChHHHHHHHHHHHHHHhcCCCCCEEEEECCC--chhhHH
Confidence            21 2    12224578888899999999999999866  4567888888876543   23433444433233  344455


Q ss_pred             HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          340 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       340 LaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      +.+-..|-....+++ |-.-      ..|+.+++++-..|+.+
T Consensus       238 i~~~~~GS~vTf~~l-~~~s------APGQl~~~~l~~~l~~l  273 (276)
T 3o1n_A          238 LAGEVFGSAATFGAV-KKAS------APGAISVADLRTVLTIL  273 (276)
T ss_dssp             HCHHHHTCCEEECBS-SCCS------STTCCBHHHHHHHHHHH
T ss_pred             HHHHHhCCceEecCC-CCCC------CCCCCCHHHHHHHHHHh
Confidence            555667888888887 2222      57799999998887643

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.69  E-value=0.33  Score=45.55  Aligned_cols=159  Identities=15%  Similarity=0.110  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE------------EeCChhhHHHHHH
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV------------LTPNLKGFEAAIA  212 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~------------l~~~~~di~~a~~  212 (426)
                      .+.+...++++...+.|..-|+++.             .+.++.+++..+..+..            +.+..++++.+.+
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~   99 (232)
T 3igs_A           33 DKPEIVAAMALAAEQAGAVAVRIEG-------------IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQ   99 (232)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHCCCeEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHH
Confidence            3677889999999999999999974             13345566443444322            1245567899999


Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      +|+|.|.+-...-.         +.    +.+.+++++++++|+.+.+.+           .+.+    .++.+.++|+|
T Consensus       100 ~Gad~V~l~~~~~~---------~p----~~l~~~i~~~~~~g~~v~~~v-----------~t~e----ea~~a~~~Gad  151 (232)
T 3igs_A          100 AGAAIIAVDGTARQ---------RP----VAVEALLARIHHHHLLTMADC-----------SSVD----DGLACQRLGAD  151 (232)
T ss_dssp             HTCSEEEEECCSSC---------CS----SCHHHHHHHHHHTTCEEEEEC-----------CSHH----HHHHHHHTTCS
T ss_pred             cCCCEEEECccccC---------CH----HHHHHHHHHHHHCCCEEEEeC-----------CCHH----HHHHHHhCCCC
Confidence            99998877543210         00    134577788888898775321           2333    35677789999


Q ss_pred             EEEE--cC-CCC--CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEee
Q 014369          293 EISL--GD-TIG--VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDC  352 (426)
Q Consensus       293 ~I~l--~D-T~G--~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~  352 (426)
                      .|.+  -+ |.+  ...|  -.++++.+++. . .++-.=    -|.. ..++..++++||+.|=+
T Consensus       152 ~Ig~~~~g~t~~~~~~~~--~~~~i~~l~~~-~-ipvIA~----GGI~t~~d~~~~~~~GadgV~V  209 (232)
T 3igs_A          152 IIGTTMSGYTTPDTPEEP--DLPLVKALHDA-G-CRVIAE----GRYNSPALAAEAIRYGAWAVTV  209 (232)
T ss_dssp             EEECTTTTSSSSSCCSSC--CHHHHHHHHHT-T-CCEEEE----SCCCSHHHHHHHHHTTCSEEEE
T ss_pred             EEEEcCccCCCCCCCCCC--CHHHHHHHHhc-C-CcEEEE----CCCCCHHHHHHHHHcCCCEEEE
Confidence            9953  11 111  1122  12455666653 2 233322    3543 57888888999997643

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=95.69  E-value=2  Score=43.03  Aligned_cols=228  Identities=18%  Similarity=0.111  Sum_probs=136.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE-eCChhhHHHHHHcCCCEEEEecc
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .+.+..++-+..|.++|.+.|.++.+.       ..+ .+.+..++...++.+.+= ..+.+-+..|+++|++.+||-  
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRvavp~-------~~~-a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRIN--  112 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVAVPH-------KED-VEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRIN--  112 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEECCS-------HHH-HHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEEC--
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCCCC-------hHH-HHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEEC--
Confidence            567778889999999999999999753       122 233444443334555442 246666667889999999984  


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC------CCCCHHH----HHHHHHHHHhCCCCE
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSK----VAYVAKELHDMGCFE  293 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~------~r~~~~~----l~~~~~~l~~~Gad~  293 (426)
                        +    -|++.     -++++++++.||++|+.++.-+-  .|+-+.      +..+|+-    ..+.++.+.+.|.+.
T Consensus       113 --P----GNig~-----~~~~~~vv~~ak~~~~piRIGvN--~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~  179 (366)
T 3noy_A          113 --P----GNIGK-----EEIVREIVEEAKRRGVAVRIGVN--SGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTN  179 (366)
T ss_dssp             --H----HHHSC-----HHHHHHHHHHHHHHTCEEEEEEE--GGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             --C----cccCc-----hhHHHHHHHHHHHcCCCEEEecC--CcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence              3    24443     24677899999999999985433  343211      1123443    344677888899874


Q ss_pred             EE--EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc-CcHH------HHHHHHHH-cCC-CEEeecccCCCCCCC
Q 014369          294 IS--LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQSL------PNILISLQ-MGI-STVDCSVAGLGGCPY  362 (426)
Q Consensus       294 I~--l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~-GlA~------ANaLaAl~-aGa-~~VD~Sv~GlGecP~  362 (426)
                      |.  ++-+    .+.....-.+.|.+.. +.||  |+--|- |...      +-.+-++. .|+ |.|-+|+.+      
T Consensus       180 iviS~K~S----~v~~~i~ayr~la~~~-dyPL--HlGvTEAG~~~~G~ikSsigiG~LL~dGIGDTIRVSLt~------  246 (366)
T 3noy_A          180 YKVSIKGS----DVLQNVRANLIFAERT-DVPL--HIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVSLTD------  246 (366)
T ss_dssp             EEEEEECS----SHHHHHHHHHHHHHHC-CCCE--EECCSSCCSHHHHHHHHHHHHHHHHHTTCCSEECCCCSS------
T ss_pred             EEEeeecC----ChHHHHHHHHHHHhcc-CCCE--EEccCCCCCCcceeeehHHHHHHHHHhcccceEEEeCCC------
Confidence            44  3332    4444444444555543 2344  554442 5553      33444554 374 677777762      


Q ss_pred             CCCCCCcccHHHHHHHHH---hCCC--------------CCCcChhhHHHHHHHHHHHh-CCCCCCCCcccchh
Q 014369          363 AKGASGNVATEDVVYMLS---GLGV--------------ETNVDLRKLMLAGDFINKHL-GRPSGSKTAIALNR  418 (426)
Q Consensus       363 a~graGNa~lEevv~~L~---~lG~--------------~~~iDl~~L~~la~~v~~~~-g~~~~~~~pivG~~  418 (426)
                             .|.||+-.+.+   .+|.              .+.+|+   .++++.+++.+ +++.|-+.++.|.-
T Consensus       247 -------~p~~Ev~va~~ILqslglR~~g~~~ISCPtCGRt~~dl---~~~~~~ie~~l~~~~~~lkVAVMGCv  310 (366)
T 3noy_A          247 -------DPVVEVETAYEILKSLGLRRRGVEIVACPTCGRIEVDL---PKVVKEVQEKLSGVKTPLKVAVMGCV  310 (366)
T ss_dssp             -------CHHHHHHHHHHHHHHTTSCCSSCEEEECCCCTTCCSCH---HHHHHHHHHHTTTCCSCCEEEEESSS
T ss_pred             -------CcHHHHHHHHHHHHhcCCCcCCCEEEECCCCCCccccH---HHHHHHHHHHHhCCCCCCEEEEEccc
Confidence                   25788765443   3443              245666   55566777766 45556666666653

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=95.67  E-value=0.75  Score=42.73  Aligned_cols=183  Identities=15%  Similarity=0.106  Sum_probs=102.6

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---
Q 014369          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---  202 (426)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---  202 (426)
                      +.+|-|+=      +...+.++..++++...+.|+..+-+    .|.++      ....+.++   +.++...+  |   
T Consensus         6 ~~iDht~l------~p~~t~~~i~~l~~~a~~~g~~~v~v----~~~~v------~~~~~~l~---~v~v~~v~~~P~g~   66 (225)
T 1mzh_A            6 KYIDNAAL------KPHLSEKEIEEFVLKSEELGIYAVCV----NPYHV------KLASSIAK---KVKVCCVIGFPLGL   66 (225)
T ss_dssp             GGEEEEEC------CTTCCHHHHHHHHHHHHHTTCSEEEE----CGGGH------HHHHHHCS---SSEEEEEESTTTCC
T ss_pred             hhcccccc------CCCCCHHHHHHHHHHHHHhCCeEEEE----CHHHH------HHHHHHhc---CCceeeEecCCCCc
Confidence            35666661      22468888888999999999987664    22222      11122222   45555443  2   


Q ss_pred             C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          203 N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       203 ~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                      +     ....+.|.+.|++.|.+.+..+-.  +   ....+..++.+..+.+.+.  ++.+.  +...     ....+++
T Consensus        67 ~~~~~k~~~~~~A~~~Gad~Id~viN~g~~--~---~~~~~~~~~~i~~v~~a~~--pv~vK--vi~e-----~~~l~~~  132 (225)
T 1mzh_A           67 NKTSVKVKEAVEAVRDGAQELDIVWNLSAF--K---SEKYDFVVEELKEIFRETP--SAVHK--VIVE-----TPYLNEE  132 (225)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCHHHH--H---TTCHHHHHHHHHHHHHTCT--TSEEE--EECC-----GGGCCHH
T ss_pred             cchhhhHHHHHHHHHcCCCEEEEEecHHHH--h---cCChHHHHHHHHHHHHHhc--CceEE--EEEe-----CCCCCHH
Confidence            1     124568889999999977655441  1   1123444444433333332  33332  3211     1235678


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCC---CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          278 KVAYVAKELHDMGCFEISLGDT---IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT---~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .+.++++.+.++|+|.| -..|   .|..+++.++.+.+.+...+|.  +..=.=.+    ..-+++.+++||+.|
T Consensus       133 ~~~~~a~~a~eaGad~I-~tstg~~~gga~~~~i~~v~~~v~~~ipV--ia~GGI~t----~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          133 EIKKAVEICIEAGADFI-KTSTGFAPRGTTLEEVRLIKSSAKGRIKV--KASGGIRD----LETAISMIEAGADRI  201 (225)
T ss_dssp             HHHHHHHHHHHHTCSEE-ECCCSCSSSCCCHHHHHHHHHHHTTSSEE--EEESSCCS----HHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHHHHHHhCCCCcE--EEECCCCC----HHHHHHHHHhCchHH
Confidence            89999999999999999 3344   2334555555544443222332  22211112    367788888999965

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=95.55  E-value=0.6  Score=44.76  Aligned_cols=204  Identities=14%  Similarity=0.149  Sum_probs=124.2

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhHh-cC-CCcEEEEe-
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE-GARLPVLT-  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~-~~~l~~l~-  201 (426)
                      +..+|-|+= +     ..-+.++..++++...+.  |+..|-+    +|.++|      ...+.++. -. ++++.+.+ 
T Consensus        13 ~~~IDhTlL-~-----p~~t~~~i~~lc~eA~~~~~~~~aVcV----~p~~v~------~a~~~L~~~g~~~v~v~tVig   76 (260)
T 1p1x_A           13 LKLMDLTTL-N-----DDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLKEQGTPEIRIATVTN   76 (260)
T ss_dssp             HTTEEEECC-C-----TTCCHHHHHHHHHHTEETTEECSEEEC----CGGGHH------HHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHhchhcC-C-----CCCCHHHHHHHHHHHHhccCCceEEEE----CHHHHH------HHHHHhhhcCCCCceEEEEeC
Confidence            445676664 2     234777777788777776  7766643    344432      33344442 23 56776655 


Q ss_pred             -C----C----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC
Q 014369          202 -P----N----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       202 -~----~----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~  272 (426)
                       |    +    ...++.|++.|+++|-+.+......     ....+...+.+..+.+.|.+.|..+-+-|.      ...
T Consensus        77 FP~G~~~~~~Kv~E~~~Av~~GAdEIDmVinig~l~-----~g~~~~v~~ei~~v~~a~~~~g~~lKvIlE------t~~  145 (260)
T 1p1x_A           77 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFDLVKACKEACAAANVLLKVIIE------TGE  145 (260)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCCHHHHHHHHHHHHHHHHTTCEEEEECC------HHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHhhh-----CCCHHHHHHHHHHHHHHhcccCCeEEEEEe------ccc
Confidence             3    1    1467889999999999998765431     223467788888888888877765543232      122


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHH-----
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQ-----  344 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~-----  344 (426)
                      .++++.+...++.+.++|+|-|--.-  +.|.++|+++.-|.+.+++.. +. ++.+-.---.-. ...+++=++     
T Consensus       146 L~d~e~i~~a~~ia~eaGADfVKTSTGf~~~gAt~e~v~lm~~~I~~~~~g~-~v~VKaaGGIrt-~~~al~~i~aga~~  223 (260)
T 1p1x_A          146 LKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEK-TVGFKPAGGVRT-AEDAQKYLAIADEL  223 (260)
T ss_dssp             HCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTT-TCEEECBSSCCS-HHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CceEEEeCCCCC-HHHHHHHHHhhhhh
Confidence            35666688999999999999877652  235569999988877776542 21 244433211111 233333333     


Q ss_pred             cCCCEEeecccCCCC
Q 014369          345 MGISTVDCSVAGLGG  359 (426)
Q Consensus       345 aGa~~VD~Sv~GlGe  359 (426)
                      .|.+|++....=+|-
T Consensus       224 lG~~w~~~~~~RiGt  238 (260)
T 1p1x_A          224 FGADWADARHYRFGA  238 (260)
T ss_dssp             HCTTSCSTTTBCEEE
T ss_pred             ccccccccCceEeec
Confidence            456677666665554

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=95.55  E-value=0.36  Score=44.76  Aligned_cols=173  Identities=14%  Similarity=0.100  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEec
Q 014369          149 VKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      +-.++++.+.+.|++.|.+-    .+..     .. .. ++++.+++..+..+.+-  +++.++++.++++|++.|.+..
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~-----~~-~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~  105 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGT-----GD-NR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT  105 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTS-----CC-CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcC-----CC-hH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence            56788999999999999883    3321     11 23 45555554345555442  3677889999999999998853


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec-CCCCC--CCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEG--AIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg-~pd~~--r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      .                .+.+...+.+..+.+|..+...+..-.| ....+  ..+. ...++++.+.++|++.|.+-+.
T Consensus       106 ~----------------~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~  168 (244)
T 1vzw_A          106 A----------------ALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCARYVVTDI  168 (244)
T ss_dssp             H----------------HHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCCEEEEEC
T ss_pred             h----------------HhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCEEEEecc
Confidence            2                2222223334445555444433332100 00011  0111 3455677788899998888664


Q ss_pred             C--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHc---CCCEEe
Q 014369          300 I--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM---GISTVD  351 (426)
Q Consensus       300 ~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~a---Ga~~VD  351 (426)
                      .  |.... --.++++.+++... .++..    +=|... .++..++++   ||+.|-
T Consensus       169 ~~~~~~~g-~~~~~~~~i~~~~~-ipvia----~GGI~~~~d~~~~~~~~~~Gadgv~  220 (244)
T 1vzw_A          169 AKDGTLQG-PNLELLKNVCAATD-RPVVA----SGGVSSLDDLRAIAGLVPAGVEGAI  220 (244)
T ss_dssp             -------C-CCHHHHHHHHHTCS-SCEEE----ESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             CcccccCC-CCHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHHHHhhccCCCceee
Confidence            2  21111 12355666666543 23443    235554 778888888   887553

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=95.43  E-value=0.35  Score=47.22  Aligned_cols=125  Identities=16%  Similarity=0.124  Sum_probs=83.8

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .++.|++.|++.|.+-+...+        ....+.++.+.++++.|+++|+.+.+  +...|...  ..+++.+...++.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs--------~~~~~~l~~i~~v~~~a~~~GlpvIi--e~~~G~~~--~~d~e~i~~aari  197 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGS--------EYEHQSIKNIIQLVDAGMKVGMPTMA--VTGVGKDM--VRDQRYFSLATRI  197 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTS--------TTHHHHHHHHHHHHHHHHTTTCCEEE--EECC------CCSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEECCC--------CcHHHHHHHHHHHHHHHHHcCCEEEE--ECCCCCcc--CCCHHHHHHHHHH
Confidence            588999999998777654322        12457888899999999999998763  22122111  2578888889999


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEe--CCCcCcHHHHHHHHHHcCCCEEee
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~--HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      +.++|+|.|-..=|     ++.    ++.+.+..+. ++-+=+  +-+.--.+.++-.|+++||+.+-+
T Consensus       198 A~elGAD~VKt~~t-----~e~----~~~vv~~~~v-PVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~v  256 (295)
T 3glc_A          198 AAEMGAQIIKTYYV-----EKG----FERIVAGCPV-PIVIAGGKKLPEREALEMCWQAIDQGASGVDM  256 (295)
T ss_dssp             HHHTTCSEEEEECC-----TTT----HHHHHHTCSS-CEEEECCSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHhCCCEEEeCCC-----HHH----HHHHHHhCCC-cEEEEECCCCCHHHHHHHHHHHHHhCCeEEEe
Confidence            99999999988843     233    3445544442 344433  223345678888999999996543

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=95.38  E-value=0.66  Score=44.79  Aligned_cols=143  Identities=13%  Similarity=0.114  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecC--CC-CCccccccCHHHHHHHhHhcCCCc-EEEEe--C---ChhhHHHHHHcC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSF--VS-PKWVPQLADARDVMEAVRDLEGAR-LPVLT--P---NLKGFEAAIAAG  214 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~--~s-~~~~p~~~D~~~v~~~i~~~~~~~-l~~l~--~---~~~di~~a~~~G  214 (426)
                      ..+.++.++-++.|.+.|++.|-+...  .. ....|...+..++++.++..++.. +....  |   +.+-++...++|
T Consensus        32 ~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g  111 (304)
T 2qgq_A           32 SRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELD  111 (304)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHCT
T ss_pred             eeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhCC
Confidence            468888899999999999998766421  00 000111245677888887766653 32221  2   234577788889


Q ss_pred             --CCEEEEec-cCChHHHhhhcCC--CHHHHHHHHHHHHHHHHh--cCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          215 --AKEVAIFA-SASEAFSKSNINC--SIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       215 --v~~V~i~~-~~Sd~~~~~~~~~--s~~e~l~~~~~~v~~Ak~--~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                        ++.+++.+ +.|+.-.+. +++  +.    +++.++++.+++  .|+.+.++++  +|.|..   +.+.+.+.++.+.
T Consensus       112 ~~~~~l~i~lqs~s~~vl~~-m~r~~t~----e~~~~~i~~l~~~~~gi~i~~~~I--vG~PgE---t~ed~~~t~~~l~  181 (304)
T 2qgq_A          112 KVVKYFDVPVQHGSDKILKL-MGRTKSS----EELKKMLSSIRERFPDAVLRTSII--VGFPGE---TEEDFEELKQFVE  181 (304)
T ss_dssp             TBCCEEECCCBCSCHHHHHH-TTCCSCH----HHHHHHHHHHHHHCTTCEEEEEEE--ECCTTC---CHHHHHHHHHHHH
T ss_pred             CCccEEEEecccCCHHHHHH-hCCCCCH----HHHHHHHHHHHhhCCCCEEEEEEE--EeCCCC---CHHHHHHHHHHHH
Confidence              88898877 445544443 444  44    444566667777  6887777666  566644   4678888888888


Q ss_pred             hCCCCEEEE
Q 014369          288 DMGCFEISL  296 (426)
Q Consensus       288 ~~Gad~I~l  296 (426)
                      +++.+.+.+
T Consensus       182 ~l~~~~v~~  190 (304)
T 2qgq_A          182 EIQFDKLGA  190 (304)
T ss_dssp             HHCCSEEEE
T ss_pred             HcCCCEEEE
Confidence            888876653

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=95.37  E-value=0.21  Score=45.53  Aligned_cols=172  Identities=13%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCCh-hhHHHHHHcCCCEEEEecc
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNL-KGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~~  223 (426)
                      .....+.++.+.++|++.+++...-.+ +.+.+....+..+.+++..+..+.+  ++.+. +.++.+.++|++.|.+...
T Consensus        15 ~~~~~~~~~~~~~~G~~~i~~~~~dg~-~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~   93 (220)
T 2fli_A           15 YANFASELARIEETDAEYVHIDIMDGQ-FVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE   93 (220)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEEEEEBSS-SSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGG
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeecCC-CCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccC
Confidence            345567888899999999888742111 0122222234555566443444333  34554 4689999999999988754


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC---
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI---  300 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~---  300 (426)
                      ..+                .....++.+++.|..+.+.+.     |   .++.+.+.++     ..++|.|.+ |++   
T Consensus        94 ~~~----------------~~~~~~~~~~~~g~~i~~~~~-----~---~t~~e~~~~~-----~~~~d~vl~-~~~~~g  143 (220)
T 2fli_A           94 STR----------------HIHGALQKIKAAGMKAGVVIN-----P---GTPATALEPL-----LDLVDQVLI-MTVNPG  143 (220)
T ss_dssp             GCS----------------CHHHHHHHHHHTTSEEEEEEC-----T---TSCGGGGGGG-----TTTCSEEEE-ESSCTT
T ss_pred             ccc----------------cHHHHHHHHHHcCCcEEEEEc-----C---CCCHHHHHHH-----HhhCCEEEE-EEECCC
Confidence            322                123555666777877653331     1   1222322221     245786644 333   


Q ss_pred             --CCCCHHHHHHHHHHHHHhcC----CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          301 --GVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       301 --G~~~P~~v~~li~~l~~~~p----~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                        |...+....+.++.+++..+    ..++.+    +-|....|.-.++++|++.|.+.
T Consensus       144 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~~~~~~~~~Gad~vvvG  198 (220)
T 2fli_A          144 FGGQAFIPECLEKVATVAKWRDEKGLSFDIEV----DGGVDNKTIRACYEAGANVFVAG  198 (220)
T ss_dssp             CSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES
T ss_pred             CcccccCHHHHHHHHHHHHHHHhcCCCceEEE----ECcCCHHHHHHHHHcCCCEEEEC
Confidence              32222222333455554331    234444    34555578888889999988765

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=95.36  E-value=0.64  Score=43.18  Aligned_cols=206  Identities=15%  Similarity=0.110  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-.++++.+.+.|++.|.+--.....  .......+.++.+++..++.+.+.  ..+.++++.++++|++.|.+...  
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~--  105 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLDITASV--EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTA--  105 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSS--SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH--
T ss_pred             cCHHHHHHHHHHcCCCEEEEECCchhh--cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH--
Confidence            355889999999999998875322110  000111233444443334454443  25678899999999999987532  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeee--c---CCCCCCC--CHHHHHHHHHHHHhCCCCEEEEc
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVV--G---CPVEGAI--PPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~f--g---~pd~~r~--~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                                    .++....+.+..+..|. .+...+..-.  |   ....+..  +.....+.++.+.++|++.|.+-
T Consensus       106 --------------~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~  171 (253)
T 1thf_D          106 --------------AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLT  171 (253)
T ss_dssp             --------------HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred             --------------HHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEE
Confidence                          12111112222233332 1211121100  0   0001100  00123456677788999988886


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          298 DTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       298 DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      ++.  |..... -.++++.+++..+. ++..    .-|.. ..++..++++||+.|-+.=.=+         .+....++
T Consensus       172 ~~~~~g~~~g~-~~~~~~~l~~~~~i-pvia----~GGI~~~~d~~~~~~~Gadgv~vGsal~---------~~~~~~~~  236 (253)
T 1thf_D          172 SIDRDGTKSGY-DTEMIRFVRPLTTL-PIIA----SGGAGKMEHFLEAFLAGADAALAASVFH---------FREIDVRE  236 (253)
T ss_dssp             ETTTTTSCSCC-CHHHHHHHGGGCCS-CEEE----ESCCCSHHHHHHHHHTTCSEEEESHHHH---------TTCSCHHH
T ss_pred             eccCCCCCCCC-CHHHHHHHHHhcCC-CEEE----ECCCCCHHHHHHHHHcCChHHHHHHHHH---------cCCCCHHH
Confidence            532  332221 14456667665532 3433    24555 3788888899998663321101         12236888


Q ss_pred             HHHHHHhCCCCC
Q 014369          375 VVYMLSGLGVET  386 (426)
Q Consensus       375 vv~~L~~lG~~~  386 (426)
                      ++..|+..|+..
T Consensus       237 ~~~~l~~~g~~~  248 (253)
T 1thf_D          237 LKEYLKKHGVNV  248 (253)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHcCCcc
Confidence            888888887753

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=95.35  E-value=0.26  Score=47.21  Aligned_cols=203  Identities=15%  Similarity=0.064  Sum_probs=105.2

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccc---cCHHHHHHHhHhcCCCcEEEEeC--------C----------------h
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQL---ADARDVMEAVRDLEGARLPVLTP--------N----------------L  204 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~---~D~~~v~~~i~~~~~~~l~~l~~--------~----------------~  204 (426)
                      .+.+.+.++|++.||+.......+.|.-   .+.+++.+.++. .++++.++..        +                .
T Consensus        39 ~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~  117 (316)
T 3qxb_A           39 LAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRK-AGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLK  117 (316)
T ss_dssp             HHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHH-cCCeEEEeeccccccccccCCCCCHHHHHHHHHHHH
Confidence            3556667889999988754221111210   022233333332 3555554321        1                1


Q ss_pred             hhHHHHHHcCCCEEEEeccC-ChH-HH-hhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASA-SEA-FS-KSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~-Sd~-~~-~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +.++.|.+.|++.|.+.... +.. +. ........+...+.+.+++++|++.|+. +.  +...-. ....-.+++.+.
T Consensus       118 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~--lE~~~~-~~~~~~t~~~~~  194 (316)
T 3qxb_A          118 RAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLY--VEPVPL-ATEFPSSAADAA  194 (316)
T ss_dssp             HHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--ECCCSC-TTBSSCSHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEE--EEecCC-ccccCCCHHHHH
Confidence            23566778899988764432 100 00 0000001245667777888999999987 54  221000 001234678888


Q ss_pred             HHHHHHHhCCCCEE-EEcCCCCCCC------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          281 YVAKELHDMGCFEI-SLGDTIGVGT------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       281 ~~~~~l~~~Gad~I-~l~DT~G~~~------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      ++++.+.+.+.+.+ .+-||.=...      -....+.++.+...    -..+|++|..+.            .   |.-
T Consensus       195 ~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~----i~~vHlkD~~~~------------~---d~h  255 (316)
T 3qxb_A          195 RLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPW----IAAYHIQQTDGQ------------L---DRH  255 (316)
T ss_dssp             HHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGG----EEEEEECBCCSS------------S---CCC
T ss_pred             HHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhh----heEEeeecCCCC------------c---Ccc
Confidence            88877754454433 3446532221      01233334444322    367899997652            0   110


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       354 v~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                       .++      +| .|..+.+.++..|+..|++
T Consensus       256 -~~~------~G-~G~id~~~i~~~L~~~gy~  279 (316)
T 3qxb_A          256 -WSF------TQ-PGVVTPQRLQDFWDKYALT  279 (316)
T ss_dssp             -BCT------TS-CSSCCHHHHHHHHHHTTCS
T ss_pred             -CCC------CC-CceECHHHHHHHHHHcCCC
Confidence             111      22 5889999999999987765

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=95.32  E-value=1.8  Score=40.11  Aligned_cols=169  Identities=14%  Similarity=0.136  Sum_probs=90.7

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHH--HHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA--AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~--Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      ++.|.+.|++.|.+......      ...+.++.++++.+.++.  +++.|+.+.  +....+.+...-.+++.+.++++
T Consensus        95 i~~A~~lGa~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~a~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~  166 (285)
T 1qtw_A           95 MQRCEQLGLSLLNFHPGSHL------MQISEEDCLARIAESINIALDKTQGVTAV--IENTAGQGSNLGFKFEHLAAIID  166 (285)
T ss_dssp             HHHHHHTTCCEEEECCCBCT------TTSCHHHHHHHHHHHHHHHHHHCSSCEEE--EECCCCCTTBCCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHhccCCCEEE--EecCCCCCCcccCCHHHHHHHHH
Confidence            56677889999877643211      112456666665555443  344565543  44321111111246777777766


Q ss_pred             HHHhCCCC-EEEEcCC-----CC--CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          285 ELHDMGCF-EISLGDT-----IG--VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       285 ~l~~~Gad-~I~l~DT-----~G--~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .+.  +.+ .=..-||     .|  ...|..+.+.++.+.+..+ +--..+|+||..+--          |.. -|    
T Consensus       167 ~v~--~~~~~g~~~D~~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vH~~D~~~~~----------~~~-~~----  229 (285)
T 1qtw_A          167 GVE--DKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTF----------GSR-VD----  229 (285)
T ss_dssp             HCS--CGGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CC----
T ss_pred             hhc--CccceEEEEEhHhHHHcCCCcCChHHHHHHHHHHHHhcCccceeEEEEecCCCcc----------cCC-cc----
Confidence            541  222 1123365     22  2345667778888877664 434778999875420          100 00    


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHhCCCCC------CcChhhHHHHHHHHHHHhC
Q 014369          356 GLGGCPYAKGASGNVATEDVVYMLSGLGVET------NVDLRKLMLAGDFINKHLG  405 (426)
Q Consensus       356 GlGecP~a~graGNa~lEevv~~L~~lG~~~------~iDl~~L~~la~~v~~~~g  405 (426)
                         + ...+| .|..+.+.++..|+..|++.      -.+.+.+.+-.+++.+..+
T Consensus       230 ---~-h~~~G-~G~id~~~~~~~L~~~gy~g~~~~lE~~~~~~~~~s~~~lr~~~~  280 (285)
T 1qtw_A          230 ---R-HHSLG-EGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQT  280 (285)
T ss_dssp             ---C-EECTT-TSSSCSHHHHHHHTCGGGTTSEEEECCSCGGGHHHHHHHHHHHTT
T ss_pred             ---c-ccCCC-CCCCCHHHHHHHHhccCcCCCCEEEecCCCcchHHHHHHHHHHHh
Confidence               0 01123 58899999999998765431      0144566666666666543

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=95.31  E-value=1.3  Score=41.89  Aligned_cols=202  Identities=16%  Similarity=0.182  Sum_probs=98.1

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCC-cc-ccc--cCHHHHHHHhHhcCCC-cEEEEeC--------C-h-----------h
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPK-WV-PQL--ADARDVMEAVRDLEGA-RLPVLTP--------N-L-----------K  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~-~~-p~~--~D~~~v~~~i~~~~~~-~l~~l~~--------~-~-----------~  205 (426)
                      .+.++.+.++|++.||+.. ..|. |. +.+  .+.+++.+.++. .++ .+.+..+        + .           +
T Consensus        21 ~~~l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~h~~~~~nl~s~d~~~~r~~~~~~~~~   98 (303)
T 3aal_A           21 LAASEEAASYGANTFMIYT-GAPQNTKRKSIEELNIEAGRQHMQA-HGIEEIVVHAPYIINIGNTTNLDTFSLGVDFLRA   98 (303)
T ss_dssp             HHHHHHHHHTTCSEEEEES-SCTTCCCCCCSGGGCHHHHHHHHHH-TTCCEEEEECCTTCCTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcC-CCCCccCCCCCCHHHHHHHHHHHHH-cCCceEEEeccccccCCCCCcHHHHHHHHHHHHH
Confidence            4566667889999999932 2221 11 111  345555555543 233 3444332        1 1           1


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+....|...+...-+.+..--.+++.+.++++.
T Consensus        99 ~i~~A~~lGa~~vv~h~g~~-------~~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~t~~~~~~li~~  171 (303)
T 3aal_A           99 EIERTEAIGAKQLVLHPGAH-------VGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFEELAYIIDG  171 (303)
T ss_dssp             HHHHHHHHTCSEEEECCEEC-------TTSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccCCCHHHHHHHHHh
Confidence            24556667888777653311       12255666666666665543322223333432211110011256666666554


Q ss_pred             HHhCCC-CEE-EEcCCC-----CCCCHH-HHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          286 LHDMGC-FEI-SLGDTI-----GVGTPG-TVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       286 l~~~Ga-d~I-~l~DT~-----G~~~P~-~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +   +- +.+ ..-||.     |. .|. .+.++++.+.+.++ .--..+|+||..+--          |.. .|- -..
T Consensus       172 v---~~~~~vg~~lD~~H~~~~g~-d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~d~-h~~  235 (303)
T 3aal_A          172 V---AYNDKLSVCFDTCHTHDAGY-DIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPR----------GSR-KDR-HEN  235 (303)
T ss_dssp             C---TTGGGEEEEEEHHHHHHHTC-CHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CCC-EEC
T ss_pred             c---CCCCCEEEEEEccCHhhhCC-ChhhhHHHHHHHHHHhcCcccEEEEEeeCCCCcC----------CCC-CcC-CCC
Confidence            3   31 212 223553     31 222 35556666554443 334678888765410          100 000 011


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          357 LGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       357 lGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +       | .|..+.+.++..|+..|++
T Consensus       236 ~-------G-~G~id~~~~~~~L~~~gy~  256 (303)
T 3aal_A          236 I-------G-FGHIGFAALNYIVHHPQLE  256 (303)
T ss_dssp             T-------T-SSSSCHHHHHHHHTCTTCT
T ss_pred             C-------C-CCCCCHHHHHHHHhCcCcC
Confidence            2       3 5889999999999976553

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=95.23  E-value=0.7  Score=45.37  Aligned_cols=210  Identities=16%  Similarity=0.102  Sum_probs=122.8

Q ss_pred             HHHHHHhCCCCeEEEe-cCC--CCCcccc--ccCHHHHHHHhHhcCC-C--cEEEEe--C----Ch----hhHHHHHHcC
Q 014369          153 LIRRLVSSGLPVVEAT-SFV--SPKWVPQ--LADARDVMEAVRDLEG-A--RLPVLT--P----NL----KGFEAAIAAG  214 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG-~~~--s~~~~p~--~~D~~~v~~~i~~~~~-~--~l~~l~--~----~~----~di~~a~~~G  214 (426)
                      -++.++++|++.|=++ ...  +..+.|.  +...++++..++.+.. .  .+.+++  +    +.    +.++...++|
T Consensus        37 sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aG  116 (307)
T 3lye_A           37 SARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSG  116 (307)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence            3566788999999994 221  1111232  2345677766665432 1  244444  2    22    3456677899


Q ss_pred             CCEEEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCC
Q 014369          215 AKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       215 v~~V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~G  290 (426)
                      +.-|+|-..+.+.   |...+-=.+.+++.++++.+++.+++.|....+ +..+    |+. ....+...+-+++..++|
T Consensus       117 aagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I-~ART----Da~~~~gldeAi~Ra~ay~eAG  191 (307)
T 3lye_A          117 VAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVL-IART----DALQSLGYEECIERLRAARDEG  191 (307)
T ss_dssp             CCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEE-EEEE----CCHHHHCHHHHHHHHHHHHHTT
T ss_pred             CeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEec----hhhhccCHHHHHHHHHHHHHCC
Confidence            9999999876542   221121247889999998777776666643221 1110    110 123556677777888999


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC-CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD-TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN-d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN  369 (426)
                      ||.|.+.   |.-+++++.++.+.+. .+|. .+.+-... +..+. .  -.--++|+++|-.....+        |+-.
T Consensus       192 AD~ifi~---~~~~~~~~~~i~~~~~-~~Pv-~~n~~~~g~~p~~t-~--~eL~~lGv~~v~~~~~~~--------raa~  255 (307)
T 3lye_A          192 ADVGLLE---GFRSKEQAAAAVAALA-PWPL-LLNSVENGHSPLIT-V--EEAKAMGFRIMIFSFATL--------APAY  255 (307)
T ss_dssp             CSEEEEC---CCSCHHHHHHHHHHHT-TSCB-EEEEETTSSSCCCC-H--HHHHHHTCSEEEEETTTH--------HHHH
T ss_pred             CCEEEec---CCCCHHHHHHHHHHcc-CCce-eEEeecCCCCCCCC-H--HHHHHcCCeEEEEChHHH--------HHHH
Confidence            9999987   6678899888888874 2443 12222221 12222 2  333456999995444433        5667


Q ss_pred             ccHHHHHHHHHhCC
Q 014369          370 VATEDVVYMLSGLG  383 (426)
Q Consensus       370 a~lEevv~~L~~lG  383 (426)
                      .++++.+..|+..|
T Consensus       256 ~a~~~~~~~l~~~g  269 (307)
T 3lye_A          256 AAIRETLVRLRDHG  269 (307)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhC
Confidence            78888888887643

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=95.22  E-value=0.62  Score=43.25  Aligned_cols=208  Identities=18%  Similarity=0.135  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      ++-+++++.+.+.|++.|.+--+.... ... ....+.++.+++..++.+.+..  ++.++++.++++|++.|.+.... 
T Consensus        31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~-~~~-~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~-  107 (252)
T 1ka9_F           31 GDPVEAARAYDEAGADELVFLDISATH-EER-AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-  107 (252)
T ss_dssp             TCHHHHHHHHHHHTCSCEEEEECCSST-TCH-HHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH-
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCccc-cCc-cccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH-
Confidence            456889999999999988775221110 000 0112333444433345555433  46789999999999999986321 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEee-----ecCCCCCC--CCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCV-----VGCPVEGA--IPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~-----fg~pd~~r--~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                         .+.         -+.+.++.+.   .|. .+...+.+-     |-....+-  .+.....+.++.+.++|++.|.+.
T Consensus       108 ---l~~---------p~~~~~~~~~---~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~  172 (252)
T 1ka9_F          108 ---VRR---------PELIRELADH---FGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLT  172 (252)
T ss_dssp             ---HHC---------THHHHHHHHH---HCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEE
T ss_pred             ---HhC---------cHHHHHHHHH---cCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEe
Confidence               000         0112233333   231 111112110     00000110  000123455667778899988886


Q ss_pred             CC--CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          298 DT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       298 DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      ++  .|...... .++++.+++.++. |+-.-    -|.. ..++...+++||+.|-+.=.   =      -.+.-+.++
T Consensus       173 ~~~~~g~~~g~~-~~~i~~l~~~~~i-pvia~----GGI~~~~d~~~~~~~Gadgv~vgsa---l------~~~~~~~~~  237 (252)
T 1ka9_F          173 SMDRDGTKEGYD-LRLTRMVAEAVGV-PVIAS----GGAGRMEHFLEAFQAGAEAALAASV---F------HFGEIPIPK  237 (252)
T ss_dssp             ETTTTTTCSCCC-HHHHHHHHHHCSS-CEEEE----SCCCSHHHHHHHHHTTCSEEEESHH---H------HTTSSCHHH
T ss_pred             cccCCCCcCCCC-HHHHHHHHHHcCC-CEEEe----CCCCCHHHHHHHHHCCCHHHHHHHH---H------HcCCCCHHH
Confidence            43  34332211 4567777776542 33332    3444 37777778889886632211   1      123347888


Q ss_pred             HHHHHHhCCCCCCc
Q 014369          375 VVYMLSGLGVETNV  388 (426)
Q Consensus       375 vv~~L~~lG~~~~i  388 (426)
                      +...|+..|+....
T Consensus       238 ~~~~l~~~~~~~~~  251 (252)
T 1ka9_F          238 LKRYLAEKGVHVRL  251 (252)
T ss_dssp             HHHHHHHTTCCBCC
T ss_pred             HHHHHHHCCCCcCC
Confidence            88888888886544

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=95.18  E-value=0.95  Score=42.67  Aligned_cols=188  Identities=19%  Similarity=0.194  Sum_probs=120.5

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C---
Q 014369          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---  202 (426)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---  202 (426)
                      .++|-|+=.      ..-+.++..++++...+.|+..|-+    +|.|+|      ... .++ -.++++...+  |   
T Consensus        15 ~~IDhTlL~------p~~t~~~i~~lc~eA~~~~~~aVcV----~p~~v~------~a~-~l~-~~~v~v~tVigFP~G~   76 (231)
T 3ndo_A           15 ALVDHTLLK------PEATPSDVTALVDEAADLGVFAVCV----SPPLVS------VAA-GVA-PSGLAIAAVAGFPSGK   76 (231)
T ss_dssp             TTEEEECCC------TTCCHHHHHHHHHHHHHHTCSEEEE----CGGGHH------HHH-HHC-CTTCEEEEEESTTTCC
T ss_pred             HhcCcccCC------CCCCHHHHHHHHHHHHHhCCcEEEE----CHHHHH------HHH-Hhc-CCCCeEEEEecCCCCC
Confidence            456777722      2457888888999999999988776    333332      112 222 2356666554  3   


Q ss_pred             C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC---
Q 014369          203 N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI---  274 (426)
Q Consensus       203 ~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~---  274 (426)
                      +     ...++.|++.|+++|-+.+......     ....+...+.+..+++.+.  |..+-  +...     .+..   
T Consensus        77 ~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk-----~g~~~~v~~ei~~v~~a~~--~~~lK--vIiE-----t~~L~~~  142 (231)
T 3ndo_A           77 HVPGIKATEAELAVAAGATEIDMVIDVGAAL-----AGDLDAVSADITAVRKAVR--AATLK--VIVE-----SAALLEF  142 (231)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEE--EECC-----HHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEeehHhhh-----cccHHHHHHHHHHHHHHcc--CCceE--EEEE-----CcccCCC
Confidence            1     1367889999999999998754421     2346677888888887775  44333  2221     1234   


Q ss_pred             -CHHHHHHHHHHHHhCCCCEEEEcC--C-CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          275 -PPSKVAYVAKELHDMGCFEISLGD--T-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       275 -~~~~l~~~~~~l~~~Gad~I~l~D--T-~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                       +++.+...++.+.++|+|-|--.-  + .|.++++++.-|-+.+...+     .+-.----- -...+++=+++||++|
T Consensus       143 ~t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~~~v-----~VKaaGGIr-t~~~a~~~i~aGa~Ri  216 (231)
T 3ndo_A          143 SGEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVGERL-----GVKASGGIR-TAEQAAAMLDAGATRL  216 (231)
T ss_dssp             TCHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHTTTS-----EEEEESSCC-SHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhCCCc-----eEEEeCCCC-CHHHHHHHHHhcchhc
Confidence             788999999999999999887653  2 46678888877666654333     332211111 1267777889999988


Q ss_pred             eec
Q 014369          351 DCS  353 (426)
Q Consensus       351 D~S  353 (426)
                      =+|
T Consensus       217 GtS  219 (231)
T 3ndo_A          217 GLS  219 (231)
T ss_dssp             EES
T ss_pred             ccc
Confidence            655

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=95.09  E-value=0.71  Score=41.83  Aligned_cols=157  Identities=13%  Similarity=0.130  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcC-CCcEEE-EeCChhhHHHHHHcCCCEEEEec
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPV-LTPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      .+.+.-.++++.+.+.|++.|++.... +.      ..+.+.+..+..+ ...+.. .+.+...++.++++|++.|++. 
T Consensus        16 ~d~~~~~~~~~~~~~~G~~~i~l~~~~-~~------~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~-   87 (212)
T 2v82_A           16 ITPDEALAHVGAVIDAGFDAVEIPLNS-PQ------WEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTP-   87 (212)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEETTS-TT------HHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECS-
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-hh------HHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeC-
Confidence            356777889999999999999997542 11      1122222222222 122221 1245678999999999999732 


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                       ..+                  .++++.++++|.++.      .|+     .+++.+    +.+.+.|+|.|.+--|.  
T Consensus        88 -~~~------------------~~~~~~~~~~g~~~~------~g~-----~t~~e~----~~a~~~G~d~v~v~~t~--  131 (212)
T 2v82_A           88 -NIH------------------SEVIRRAVGYGMTVC------PGC-----ATATEA----FTALEAGAQALKIFPSS--  131 (212)
T ss_dssp             -SCC------------------HHHHHHHHHTTCEEE------CEE-----CSHHHH----HHHHHTTCSEEEETTHH--
T ss_pred             -CCC------------------HHHHHHHHHcCCCEE------eec-----CCHHHH----HHHHHCCCCEEEEecCC--
Confidence             111                  234567788897754      121     245543    34567999998873221  


Q ss_pred             CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          303 GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                        + .-.+.++.+++.++ ..+|..=+    |....|+...+++||+.|-+
T Consensus       132 --~-~g~~~~~~l~~~~~~~ipvia~G----GI~~~~i~~~~~~Ga~gv~v  175 (212)
T 2v82_A          132 --A-FGPQYIKALKAVLPSDIAVFAVG----GVTPENLAQWIDAGCAGAGL  175 (212)
T ss_dssp             --H-HCHHHHHHHHTTSCTTCEEEEES----SCCTTTHHHHHHHTCSEEEE
T ss_pred             --C-CCHHHHHHHHHhccCCCeEEEeC----CCCHHHHHHHHHcCCCEEEE
Confidence              1 12356666766665 34555432    34456788888899998753

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=95.04  E-value=0.66  Score=43.08  Aligned_cols=195  Identities=19%  Similarity=0.199  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCC-ccc-cc--cCHHHHHHHhHhcCCC-cEEEEeC---C---------------hhh
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPK-WVP-QL--ADARDVMEAVRDLEGA-RLPVLTP---N---------------LKG  206 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~-~~p-~~--~D~~~v~~~i~~~~~~-~l~~l~~---~---------------~~d  206 (426)
                      -.+.++.+.++|++.||+ +...|. |.+ .+  .+.+++.+.++. .++ .+.+..+   |               .+.
T Consensus        16 ~~~~~~~~~~~G~~~vEl-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~~   93 (270)
T 3aam_A           16 VAGAVEEATALGLTAFQI-FAKSPRSWRPRALSPAEVEAFRALREA-SGGLPAVIHASYLVNLGAEGELWEKSVASLADD   93 (270)
T ss_dssp             HHHHHHHHHHHTCSCEEE-ESSCTTCCSCCCCCHHHHHHHHHHHHH-TTCCCEEEECCTTCCTTCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEE-eCCCCCcCcCCCCCHHHHHHHHHHHHH-cCCceEEEecCcccCCCCCHHHHHHHHHHHHHH
Confidence            345667778889999999 433331 111 11  112223333322 234 4444432   1               123


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak-~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++.|.+.|++.|.+.....          +.+...+.+.+++++|+ +.|+.+.  +....+.+..-..+++.+.++++.
T Consensus        94 i~~a~~lGa~~vv~h~g~~----------~~~~~~~~l~~l~~~a~~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~~  161 (270)
T 3aam_A           94 LEKAALLGVEYVVVHPGSG----------RPERVKEGALKALRLAGVRSRPVLL--VENTAGGGEKVGARFEELAWLVAD  161 (270)
T ss_dssp             HHHHHHHTCCEEEECCCBS----------CHHHHHHHHHHHHHHHTCCSSSEEE--EECCCCCTTBSCCSHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEECCCCC----------CHHHHHHHHHHHHHhhcccCCCEEE--EecCCCCCCccCCCHHHHHHHHHh
Confidence            4566677888887654321          11566777778888887 7787654  332211111111377887777766


Q ss_pred             HHhCCCCEEEEcCCC-----CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          286 LHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       286 l~~~Gad~I~l~DT~-----G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      + ..|   + +-||.     |.-....+.++++.+.+.++ .--..+|+||..+--          |.. .|- -..+| 
T Consensus       162 v-~vg---~-~lD~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~d~-h~~~G-  223 (270)
T 3aam_A          162 T-PLQ---V-CLDTCHAYAAGYDVAEDPLGVLDALDRAVGLERVPVVHLNDSVGGL----------GSR-VDH-HAHLL-  223 (270)
T ss_dssp             S-SCE---E-EEEHHHHHHHTCCTTTCHHHHHHHHHHHTCGGGCCEEECCEESSCT----------TCC-CCC-EECTT-
T ss_pred             C-CEE---E-EEehhhHHhccCCchhhHHHHHHHHHHhcCccceeEEEEecCCCcc----------ccC-ccc-ccCCC-
Confidence            5 222   2 22543     21111124555666655443 323678888865420          111 000 01123 


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhCCC
Q 014369          360 CPYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~lG~  384 (426)
                             .|..+ +.++..|+..|+
T Consensus       224 -------~G~id-~~~~~~L~~~~y  240 (270)
T 3aam_A          224 -------QGKIG-EGLKRVFLDPRL  240 (270)
T ss_dssp             -------SSSST-THHHHHHTCGGG
T ss_pred             -------CCCcC-HHHHHHHhccCc
Confidence                   58899 999999987554

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*

Probab=95.03  E-value=0.67  Score=45.09  Aligned_cols=135  Identities=13%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCC-cEEEEeCC--h-hhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPN--L-KGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~-~l~~l~~~--~-~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.+.|+..|-++. .    .|-+ .|..++++.++..... .+...+..  + +.++...++|++.|
T Consensus        49 ~ls~e~i~~~i~~~~~~g~~~i~~tG-G----EPll~~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v  123 (340)
T 1tv8_A           49 LLTFDEMARIAKVYAELGVKKIRITG-G----EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRI  123 (340)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEES-S----CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEeC-C----CccchhhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEE
Confidence            57899999999999999999887753 1    2322 2455666666654433 34443421  2 34566778899999


Q ss_pred             EEeccC-Ch-HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          219 AIFASA-SE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       219 ~i~~~~-Sd-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .|.+.. ++ .|.+..-+-   ..++++.+.++.+++.|+.+.+++.  + .+.   .+.+.+.++++.+.+.|++
T Consensus       124 ~iSld~~~~~~~~~i~~~~---~~~~~v~~~i~~l~~~g~~v~i~~v--v-~~g---~n~~ei~~~~~~~~~~g~~  190 (340)
T 1tv8_A          124 NVSLDAIDDTLFQSINNRN---IKATTILEQIDYATSIGLNVKVNVV--I-QKG---INDDQIIPMLEYFKDKHIE  190 (340)
T ss_dssp             EEECCCSSHHHHHHHHSSC---CCHHHHHHHHHHHHHTTCEEEEEEE--E-CTT---TTGGGHHHHHHHHHHTTCC
T ss_pred             EEecCCCCHHHHHHhhCCC---CCHHHHHHHHHHHHHCCCCEEEEEE--E-eCC---CCHHHHHHHHHHHHhcCCe
Confidence            998754 33 333222111   0355566777788899997665443  3 121   2346788888888899987

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=95.03  E-value=0.22  Score=46.76  Aligned_cols=162  Identities=12%  Similarity=0.081  Sum_probs=97.6

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcC-CCcEEE--EeCChh-hHHHHHHcCCCEEEEec
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLE-GARLPV--LTPNLK-GFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~-~~~l~~--l~~~~~-di~~a~~~Gv~~V~i~~  222 (426)
                      .+-++.+.++|++.+.+    |.|+     |.+.-...+.+.+|+.. +..+-+  ++.+.. -++..++  ++.+.+..
T Consensus        21 ~~~i~~~~~~g~d~iHvDvmDg~fv-----pn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~itvH~   93 (227)
T 1tqx_A           21 AEETQRMESLGAEWIHLDVMDMHFV-----PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQLTFHF   93 (227)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEEEEEG
T ss_pred             HHHHHHHHHcCCCEEEEEEEeCCcC-----cchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEEEEee
Confidence            34566778889997444    4443     44433346677777653 655554  344432 3344444  77776664


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHH---HHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE--
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAH---AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL--  296 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~---~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l--  296 (426)
                      -..+.               .+.+.++   .+|++|+++.+.+.     |.   ++.+.    ++.+.++| +|.|.+  
T Consensus        94 ea~~~---------------~~~~~i~~~~~i~~~G~k~gvaln-----p~---tp~~~----~~~~l~~g~~D~Vlvms  146 (227)
T 1tqx_A           94 EALNE---------------DTERCIQLAKEIRDNNLWCGISIK-----PK---TDVQK----LVPILDTNLINTVLVMT  146 (227)
T ss_dssp             GGGTT---------------CHHHHHHHHHHHHTTTCEEEEEEC-----TT---SCGGG----GHHHHTTTCCSEEEEES
T ss_pred             cCCcc---------------CHHHHHHHHHHHHHcCCeEEEEeC-----CC---CcHHH----HHHHhhcCCcCEEEEee
Confidence            43220               1234555   88999998875442     21   23333    34455666 888833  


Q ss_pred             --cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          297 --GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       297 --~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                        +-..|...+....+.++.+++..+..+|++    |=|....|+-.++++||+.+
T Consensus       147 V~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~ti~~~~~aGAd~~  198 (227)
T 1tqx_A          147 VEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHGANII  198 (227)
T ss_dssp             SCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHTCCEE
T ss_pred             eccCCCCcccchHHHHHHHHHHHhccCCeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence              233354445566677888888775445655    56888889999999999966

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=95.02  E-value=0.89  Score=42.77  Aligned_cols=224  Identities=13%  Similarity=-0.008  Sum_probs=111.1

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEe
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLT  201 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~  201 (426)
                      +|.++-+..-|+|+.       ++.++   .++.+.++|++.||+.......+. |.-.+..+ .+.++           
T Consensus        15 ~~~~~gi~~~~~~~~-------~~~~~---~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~-~~~~~-----------   72 (295)
T 3cqj_A           15 KQIPLGIYEKALPAG-------ECWLE---RLQLAKTLGFDFVEMSVDETDERLSRLDWSREQ-RLALV-----------   72 (295)
T ss_dssp             -CCCEEEEGGGSCCC-------SCHHH---HHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHH-HHHHH-----------
T ss_pred             ccccceeeeecCCCC-------CCHHH---HHHHHHhcCCCEEEEecCCcccccCcccCCHHH-HHHHH-----------
Confidence            455677777777642       34444   556677899999999754321000 00001111 11111           


Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCC----CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH-
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC----SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-  276 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~----s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~-  276 (426)
                            +.+.+.|+....+..+.   +...+++.    .+++.++.+++.++.|+++|.+..+ +. .+ .+....... 
T Consensus        73 ------~~l~~~gl~i~~~~~~~---~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~-~~-~~-~~~~~~~~~~  140 (295)
T 3cqj_A           73 ------NAIVETGVRVPSMCLSA---HRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQ-LA-GY-DVYYQEANNE  140 (295)
T ss_dssp             ------HHHHHHCCEEEEEEEGG---GGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEE-EC-CC-SCSSSCCCHH
T ss_pred             ------HHHHHcCCeEEEEecCc---ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-EC-CC-CCCcCcCHHH
Confidence                  12234455543332211   00011111    2456788999999999999998642 21 11 110111112 


Q ss_pred             ------HHHHHHHHHHHhCCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHc
Q 014369          277 ------SKVAYVAKELHDMGCFEISLGDTIG--VGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       277 ------~~l~~~~~~l~~~Gad~I~l~DT~G--~~~P~~v~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~a  345 (426)
                            +.+.++++.+.+.|+. |.|--..+  ..+|.++.++++.+-.  |...+.+   |.+. .|.-....+..+.-
T Consensus       141 ~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~h~~~-~g~d~~~~l~~~~~  216 (295)
T 3cqj_A          141 TRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLMNSISKALGYAHYLNN--PWFQLYPDIGNLSA-WDNDVQMELQAGIG  216 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGGCSHHHHHHHHHHHCC--TTEEEECBHHHHHS-SSCCHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCcccCCHHHHHHHHHhcCC--CCeEEEeccchHhh-cCCCHHHHHHHhcc
Confidence                  3345555666667874 55544444  4477887777776621  3322222   3332 23333344443322


Q ss_pred             CCCEEeecccCCCCC-CCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          346 GISTVDCSVAGLGGC-PYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       346 Ga~~VD~Sv~GlGec-P~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      =+..|+..=.--|.. ...+| .|..+.+.++..|+..|++
T Consensus       217 ~i~~vHl~D~~~g~~~~~p~G-~G~id~~~~~~~L~~~gy~  256 (295)
T 3cqj_A          217 HIVAVHVKDTKPGVFKNVPFG-EGVVDFERCFETLKQSGYC  256 (295)
T ss_dssp             GBCCEEECEEETTEEEEECTT-SSSCCHHHHHHHHHHTTCC
T ss_pred             ceEEEEeecCCCCccCCcCCC-CCccCHHHHHHHHHHCCCc
Confidence            244555442211110 01123 6899999999999987765

>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*

Probab=95.02  E-value=0.24  Score=49.51  Aligned_cols=203  Identities=14%  Similarity=0.058  Sum_probs=117.9

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCC-----CCCccccc-cCHHHHHHHhHhc-C--CCcEEEEeC-C
Q 014369          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVPQL-ADARDVMEAVRDL-E--GARLPVLTP-N  203 (426)
Q Consensus       136 DG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~~p~~-~D~~~v~~~i~~~-~--~~~l~~l~~-~  203 (426)
                      .+.+..+.  ....+....++++-.+++-++|=-.+..     ..+.+..+ .-...+...++.+ .  ++.+....- +
T Consensus        18 ~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg   97 (349)
T 3elf_A           18 QNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHTDHC   97 (349)
T ss_dssp             HTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEEEECCC
T ss_pred             HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            34444332  4688888999999999999976543321     11111110 0012222233321 2  344444331 2


Q ss_pred             -h---------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec
Q 014369          204 -L---------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  267 (426)
Q Consensus       204 -~---------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg  267 (426)
                       .               +.++.+++.|...|.+=.|  .        .+.+|+++..++++++|+..|+.|++-|-..-|
T Consensus        98 ~~~~ld~~~~~~l~~~~~~i~~~i~~GFtSVMiDgS--~--------lp~eENi~~Tk~vv~~ah~~gvsVEaElG~iGG  167 (349)
T 3elf_A           98 PKDKLDSYVRPLLAISAQRVSKGGNPLFQSHMWDGS--A--------VPIDENLAIAQELLKAAAAAKIILEIEIGVVGG  167 (349)
T ss_dssp             CGGGGGGTHHHHHHHHHHHHHTTCCCSCSEEEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCBC
T ss_pred             CCcccchhhhhhHHHHHHHHHHHhhcCCCEEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence             1               1223333446777776433  2        367899999999999999999999988776544


Q ss_pred             CCCC--------CCCCHHHHHHHHHHHH--hCCCCEEEEc--CCCCC-------CCHHHHHHHHHHHHHhcC------Cc
Q 014369          268 CPVE--------GAIPPSKVAYVAKELH--DMGCFEISLG--DTIGV-------GTPGTVVPMLEAVMAVVP------VE  322 (426)
Q Consensus       268 ~pd~--------~r~~~~~l~~~~~~l~--~~Gad~I~l~--DT~G~-------~~P~~v~~li~~l~~~~p------~~  322 (426)
                      .+|.        ..++|+...+++++.-  .-|+|.+.++  -.=|.       +.|+.+.++=+.+.++++      .+
T Consensus       168 ~Edgv~~~~~~~~yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~I~~~v~~~~~~~~~~~~v  247 (349)
T 3elf_A          168 EEDGVANEINEKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAKLGLPADAKPF  247 (349)
T ss_dssp             -------------CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSSCCCTTSSCCCTHHHHHHHHHHHHHHTCCTTCCCC
T ss_pred             ccCCcccccccccCCCHHHHHHHHHHhCCCCCCceEEEEecCCcccCCCCCCCccCHHHHHHHHHHHHhhcCCccccCCC
Confidence            4432        2489999888887653  2347765553  12122       234445554444443332      34


Q ss_pred             eEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          323 KLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       323 ~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +|.+|+=  -|........|+..|+.-|
T Consensus       248 pLVlHGg--SG~p~e~i~~ai~~GV~Ki  273 (349)
T 3elf_A          248 DFVFHGG--SGSLKSEIEEALRYGVVKM  273 (349)
T ss_dssp             CEEECCC--TTCCHHHHHHHHHTTEEEE
T ss_pred             cEEEeCC--CCCCHHHHHHHHHcCCEEE
Confidence            6777664  5889999999999998755

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=95.02  E-value=0.67  Score=44.71  Aligned_cols=198  Identities=14%  Similarity=0.150  Sum_probs=110.5

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHH---hHhc--CCCcE
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEA---VRDL--EGARL  197 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~---i~~~--~~~~l  197 (426)
                      +=|+-+|+   =||++    .++.+..++-++.+.+.|.+.|++|--++ |..-| ....+|+.+.   ++.+  +++.+
T Consensus        10 MGIlNvTPDSFsDGG~----~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~-vs~eeE~~Rv~pvi~~l~~~~v~i   84 (270)
T 4hb7_A           10 MGILNVTPDSFSDGGK----FNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEM-VTLEEELNRVLPVVEAIVGFDVKI   84 (270)
T ss_dssp             EEEEECC--------------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-CCHHHHHHHHHHHHHHHTTSSSEE
T ss_pred             EEEEeCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCC-CchHHHHHHHHHHHHHhhcCCCeE
Confidence            34566654   46654    46888889999999999999999996443 32211 2122333332   2333  34555


Q ss_pred             EEEeCChhhHHHHHHcCCCEEEEe-ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC-
Q 014369          198 PVLTPNLKGFEAAIAAGAKEVAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-  275 (426)
Q Consensus       198 ~~l~~~~~di~~a~~~Gv~~V~i~-~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~-  275 (426)
                      ++=+...+=.++|+++|++.|.=. ....|                  .++++.+.+.+..+.  +|..-+.|.....- 
T Consensus        85 SIDT~~~~Va~~al~aGa~iINDVs~g~~d------------------~~m~~~va~~~~~~v--lMH~~~~p~~~~vv~  144 (270)
T 4hb7_A           85 SVDTFRSEVAEACLKLGVDMINDQWAGLYD------------------HRMFQIVAKYDAEII--LMHNGNGNRDEPVVE  144 (270)
T ss_dssp             EEECSCHHHHHHHHHHTCCEEEETTTTSSC------------------THHHHHHHHTTCEEE--EECCCSSCCSSCHHH
T ss_pred             EEECCCHHHHHHHHHhccceeccccccccc------------------hhHHHHHHHcCCCeE--EeccccCCccccchh
Confidence            555566677889999999988742 11111                  134455667787665  66654444211100 


Q ss_pred             --HHHHHHHHHHHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCceEEE-------E--eCC----C-c
Q 014369          276 --PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVEKLAV-------H--LHD----T-Y  332 (426)
Q Consensus       276 --~~~l~~~~~~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~~i~~-------H--~HN----d-~  332 (426)
                        ..++.+-++.+.++|++  .|.|==-+|.+ ++++-.++++.+.+-    +|.. +++       +  ..+    + +
T Consensus       145 ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~~~~lg~PvL-vG~SRKsfig~~lg~~~~~~~R~  223 (270)
T 4hb7_A          145 EMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVL-LATSRKRFTKEMMGYDTTPVERD  223 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHHHHTTCSCBE-ECCTTSHHHHHHHCSCCCSGGGH
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHHHHHhhHHHHhcCCCCEE-EEecHHHHHHHHhCCCCChHHhh
Confidence              13455566778889984  56665566665 456667777666542    3431 221       1  111    1 1


Q ss_pred             CcHHHHHHHHHHcCCCEE
Q 014369          333 GQSLPNILISLQMGISTV  350 (426)
Q Consensus       333 GlA~ANaLaAl~aGa~~V  350 (426)
                      .-.+|.+..|+..||++|
T Consensus       224 ~gt~a~~~~a~~~Ga~iv  241 (270)
T 4hb7_A          224 EVTAATTAYGIMKGVRAV  241 (270)
T ss_dssp             HHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHCCCCEE
Confidence            223456667788899987

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=94.93  E-value=0.67  Score=45.13  Aligned_cols=139  Identities=17%  Similarity=0.147  Sum_probs=88.2

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.|.+.|+.-|-+.-.    +            +.   .+.+..+..+++|    +.+.|+|.. ..+.+--..-++.+.
T Consensus        81 ~eA~~~g~aaVCV~P~----~------------V~---~a~~~L~~s~V~V----~tVigFP~G-~~~~~~Kv~Ea~~Ai  136 (288)
T 3oa3_A           81 AEAKEYGFATVCVRPD----Y------------VS---RAVQYLQGTQVGV----TCVIGFHEG-TYSTDQKVSEAKRAM  136 (288)
T ss_dssp             HHHHHHTCSEEEECGG----G------------HH---HHHHHTTTSSCEE----EEEESTTTS-CSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEECHH----H------------HH---HHHHHcCCCCCeE----EEEeCCCCC-CCcHHHHHHHHHHHH
Confidence            4566778888877521    1            22   2223333445444    444677864 445555555577888


Q ss_pred             hCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCC--ce--EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          288 DMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~--~~--i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      +.|||+|-+.=-+|.   ..-..+.+-|+.+++..+.  ++  |+....++--.. ..+..|+++|||+|=+| .|.+  
T Consensus       137 ~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~-~A~~ia~eaGADfVKTS-TGf~--  212 (288)
T 3oa3_A          137 QNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEII-AGCVLSSLAGADYVKTS-TGFN--  212 (288)
T ss_dssp             HTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECC-CSSS--
T ss_pred             HcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHH-HHHHHHHHcCCCEEEcC-CCCC--
Confidence            899999998777776   4557788888888887543  22  222333333332 23677889999999999 7775  


Q ss_pred             CCCCCCCCcccHHHHHHHHH
Q 014369          361 PYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~  380 (426)
                            +|++.+|++..+.+
T Consensus       213 ------~~GAT~edv~lmr~  226 (288)
T 3oa3_A          213 ------GPGASIENVSLMSA  226 (288)
T ss_dssp             ------SCCCCHHHHHHHHH
T ss_pred             ------CCCCCHHHHHHHHH
Confidence                  36688888776654

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=94.93  E-value=0.6  Score=44.93  Aligned_cols=163  Identities=13%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCCh
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASASE  226 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~Sd  226 (426)
                      .-.++++...+.|...|.+-.-  +++   +.-..+.++.++...++.+..  +..+...++.|.++|+|.|.+....-+
T Consensus        73 ~p~~~A~~y~~~GA~~isvltd--~~~---f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~  147 (272)
T 3qja_A           73 DPAKLAQAYQDGGARIVSVVTE--QRR---FQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE  147 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECC--GGG---HHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred             CHHHHHHHHHHcCCCEEEEecC--hhh---cCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence            4577999999999999998421  111   111123444555333333221  123455689999999999999654221


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHH
Q 014369          227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG  306 (426)
Q Consensus       227 ~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~  306 (426)
                                    .+.+.+++++++++|+.+-+.+           .+++++.    .+.++|++.|.+.-......+.
T Consensus       148 --------------~~~l~~l~~~a~~lGl~~lvev-----------~t~ee~~----~A~~~Gad~IGv~~r~l~~~~~  198 (272)
T 3qja_A          148 --------------QSVLVSMLDRTESLGMTALVEV-----------HTEQEAD----RALKAGAKVIGVNARDLMTLDV  198 (272)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEEEEE-----------SSHHHHH----HHHHHTCSEEEEESBCTTTCCB
T ss_pred             --------------HHHHHHHHHHHHHCCCcEEEEc-----------CCHHHHH----HHHHCCCCEEEECCCccccccc
Confidence                          1345677888999999865321           2455543    3446799999887433222221


Q ss_pred             HHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          307 TVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       307 ~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      .+ +.+..+++.+| +.++..    --|.. ..++....++||+.|
T Consensus       199 dl-~~~~~l~~~v~~~~pvVa----egGI~t~edv~~l~~~Gadgv  239 (272)
T 3qja_A          199 DR-DCFARIAPGLPSSVIRIA----ESGVRGTADLLAYAGAGADAV  239 (272)
T ss_dssp             CT-THHHHHGGGSCTTSEEEE----ESCCCSHHHHHHHHHTTCSEE
T ss_pred             CH-HHHHHHHHhCcccCEEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence            22 23445555555 333333    22433 577778888998865

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.85  E-value=0.5  Score=46.81  Aligned_cols=137  Identities=18%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCH
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      +.|.++|.|.|.|...-        |+.  ++...+|-+.++=.+.+.++++.+|+. .+.|.+-++.....  .+..+.
T Consensus       151 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~--~~g~~~  228 (340)
T 3gr7_A          151 RRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYH--PDGLTA  228 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCS--TTSCCG
T ss_pred             HHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEecccccc--CCCCCH
Confidence            45678899988887652        332  223346777777666677777777664 66666666632111  123567


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCC--CCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          277 SKVAYVAKELHDMGCFEISLGDT--IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT--~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      +...++++.+.++|+|.|.+.+.  ...   ..|....++++.+++.+.. +|..=+--   .....+..+++.| ||.|
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i-PVi~~GgI---~s~e~a~~~L~~G~aD~V  304 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADI-PTGAVGLI---TSGWQAEEILQNGRADLV  304 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTC-CEEEESSC---CCHHHHHHHHHTTSCSEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCC-cEEeeCCC---CCHHHHHHHHHCCCeeEE
Confidence            88899999999999999999752  110   1233245678888887753 34432211   1246677888999 8876

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=94.82  E-value=0.22  Score=51.19  Aligned_cols=200  Identities=16%  Similarity=0.058  Sum_probs=118.0

Q ss_pred             hhHHHHHHcCCCEEEEeccCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee--cC----------
Q 014369          205 KGFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GC----------  268 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~S-d~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f--g~----------  268 (426)
                      +-++...++|+.-|+|-..+. +-   |...+-=.+.++++++++.+...+...|....+ +..+-  +.          
T Consensus       164 rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vI-iARTDA~~a~l~~s~~d~r  242 (433)
T 3eol_A          164 EIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLI-VARTDAEAAKLLTSDIDER  242 (433)
T ss_dssp             HHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEE-EEEECTTTCCEESCCCSTT
T ss_pred             HHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEE-EEEcCCccccccccCcccc
Confidence            346778899999999998775 31   111111237899999998777777766654221 11111  00          


Q ss_pred             ------CCCC---------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC
Q 014369          269 ------PVEG---------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG  333 (426)
Q Consensus       269 ------pd~~---------r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G  333 (426)
                            .+..         +...+...+-+++..+ |||.|.+ .+ +.-.++++.++.+.++..+|...+.+-+--.+.
T Consensus       243 d~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~-e~-~~~~~eei~~f~~~v~~~~P~~~L~~~~sPsfn  319 (433)
T 3eol_A          243 DQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWM-ET-SKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFN  319 (433)
T ss_dssp             TGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEE-CC-SSCCHHHHHHHHHHHHHHSTTCCEEEECCSSSC
T ss_pred             cccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEE-eC-CCCCHHHHHHHHHHhcccCCCcccccCCCCCCc
Confidence                  0000         1235666666666667 9999987 11 355899999999999988886556553222222


Q ss_pred             c----H---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhC
Q 014369          334 Q----S---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG  405 (426)
Q Consensus       334 l----A---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g  405 (426)
                      .    .   +.+ .-.--++|+.+|-.++.++        ++-+.++.+++..++.-|-...++    ..-.++..+..|
T Consensus       320 w~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~--------raa~~A~~~~a~~i~~~G~~ayve----~Q~~e~~~~~~g  387 (433)
T 3eol_A          320 WKKNLDDATIAKFQRELGAMGYKFQFITLAGF--------HQLNYGMFELARGYKDRQMAAYSE----LQQAEFAAEADG  387 (433)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHGGGT
T ss_pred             ccccCChhHHhHHHHHHHHcCCeEEEeCcHHH--------HHHHHHHHHHHHHHHHcCCHHHHH----HHHHhhhhhccC
Confidence            1    1   111 1233368999998888877        678899999998887644432232    222223345688


Q ss_pred             CCCCCCCcccchhhh
Q 014369          406 RPSGSKTAIALNRIA  420 (426)
Q Consensus       406 ~~~~~~~pivG~~vf  420 (426)
                      ...-.++--+|.+-|
T Consensus       388 ~~~~~hq~~~g~~y~  402 (433)
T 3eol_A          388 YTATKHQREVGTGYF  402 (433)
T ss_dssp             CCCC--------CHH
T ss_pred             ceeeecccccccchH
Confidence            888888888887665

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=94.77  E-value=0.59  Score=45.84  Aligned_cols=211  Identities=14%  Similarity=0.106  Sum_probs=122.5

Q ss_pred             HHHHHHhCCCCeEEEe-cCC--CCCcccc--ccCHHHHHHHhHhcCCC--cEEEEe--C----Ch----hhHHHHHHcCC
Q 014369          153 LIRRLVSSGLPVVEAT-SFV--SPKWVPQ--LADARDVMEAVRDLEGA--RLPVLT--P----NL----KGFEAAIAAGA  215 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG-~~~--s~~~~p~--~~D~~~v~~~i~~~~~~--~l~~l~--~----~~----~di~~a~~~Gv  215 (426)
                      -++.++++|++.|=++ ...  +..+.|.  ..+.++++..++.+...  .+.+++  +    +.    +-++...++|+
T Consensus        30 sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGa  109 (302)
T 3fa4_A           30 SARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSGV  109 (302)
T ss_dssp             HHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence            4666788999999984 221  1112232  23456777666644221  333443  2    22    34566778999


Q ss_pred             CEEEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCCC
Q 014369          216 KEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       216 ~~V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~Ga  291 (426)
                      .-|+|-..+.+-   |...+-=.+.+++.++++.+++.+++.|..+.+ +..+    |+. ....+...+-+++..++||
T Consensus       110 agv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I-~ART----Da~~~~gldeAi~Ra~ay~eAGA  184 (302)
T 3fa4_A          110 AAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVV-IART----DSLQTHGYEESVARLRAARDAGA  184 (302)
T ss_dssp             CEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEE-EEEE----CCHHHHCHHHHHHHHHHHHTTTC
T ss_pred             cEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEE-EEEe----cccccCCHHHHHHHHHHHHHcCC
Confidence            999999876552   222222247899999998777776656654321 1111    110 1235666777778889999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      |.|.+.   |.-+++++.++.+.+.. .|. .+.+-.......-...-|  -++|+++|-.....+        |+-..+
T Consensus       185 D~ifi~---g~~~~~ei~~~~~~~~~-~Pl-~~n~~~~g~~p~~~~~eL--~~lGv~~v~~~~~~~--------raa~~A  249 (302)
T 3fa4_A          185 DVGFLE---GITSREMARQVIQDLAG-WPL-LLNMVEHGATPSISAAEA--KEMGFRIIIFPFAAL--------GPAVAA  249 (302)
T ss_dssp             SEEEET---TCCCHHHHHHHHHHTTT-SCE-EEECCTTSSSCCCCHHHH--HHHTCSEEEETTTTH--------HHHHHH
T ss_pred             CEEeec---CCCCHHHHHHHHHHhcC-Cce-eEEEecCCCCCCCCHHHH--HHcCCCEEEEchHHH--------HHHHHH
Confidence            999985   45688888877776632 332 122222222221123333  356999886655544        566778


Q ss_pred             HHHHHHHHHhCC
Q 014369          372 TEDVVYMLSGLG  383 (426)
Q Consensus       372 lEevv~~L~~lG  383 (426)
                      +++.+..|+.-|
T Consensus       250 ~~~~~~~i~~~g  261 (302)
T 3fa4_A          250 MREAMEKLKRDG  261 (302)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            888888887644

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=94.74  E-value=0.65  Score=45.77  Aligned_cols=137  Identities=18%  Similarity=0.042  Sum_probs=87.3

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCH
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      +.|.++|.|.|.|-..-        |+.  .....+|-+.++-.+.+.++++.+|+. .+.|.+-++...  ...+..+.
T Consensus       151 ~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~--~~~~g~~~  228 (338)
T 1z41_A          151 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASD--YTDKGLDI  228 (338)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCC--CSTTSCCH
T ss_pred             HHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcc--cCCCCCCH
Confidence            45678999988887542        121  122345667776666677777777664 666766665321  11234678


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCC--C---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcC-CCE
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIG--V---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMG-IST  349 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G--~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aG-a~~  349 (426)
                      +...++++.+.++|++.|.+.+..-  .   ..|..-.++++.+++.+.. +|..=.    |. ....+..+++.| ||.
T Consensus       229 ~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G----gi~s~~~a~~~l~~G~aD~  303 (338)
T 1z41_A          229 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADM-ATGAVG----MITDGSMAEEILQNGRADL  303 (338)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCC-EEEECS----SCCSHHHHHHHHHTTSCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCC-CEEEEC----CCCCHHHHHHHHHcCCceE
Confidence            8899999999999999999976421  1   1222235667888887643 344321    22 357778888998 887


Q ss_pred             Ee
Q 014369          350 VD  351 (426)
Q Consensus       350 VD  351 (426)
                      |-
T Consensus       304 V~  305 (338)
T 1z41_A          304 IF  305 (338)
T ss_dssp             EE
T ss_pred             Ee
Confidence            63

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=94.72  E-value=1.2  Score=42.60  Aligned_cols=178  Identities=16%  Similarity=0.159  Sum_probs=110.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V  218 (426)
                      =+.+..+++++.|.++|.+.|=.+.|-   ++.....+.  ++-++.+++.   .++.+.+=.-....++.+.+. ++.+
T Consensus        34 ~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~--~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~  110 (262)
T 1zco_A           34 ESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYG--EKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDIL  110 (262)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT--HHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCcc--HHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEE
Confidence            378999999999999999998888762   110111111  2223333322   234433333467778888888 9999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .|....-.          -   .    .+++++-+.|.+|.  ++       .+. .+++.+...++.+...|...+.|.
T Consensus       111 kIga~~~~----------n---~----~ll~~~a~~~kPV~--lk-------~G~~~t~~e~~~Av~~i~~~Gn~~i~L~  164 (262)
T 1zco_A          111 QIGARNSQ----------N---F----ELLKEVGKVENPVL--LK-------RGMGNTIQELLYSAEYIMAQGNENVILC  164 (262)
T ss_dssp             EECGGGTT----------C---H----HHHHHHTTSSSCEE--EE-------CCTTCCHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             EECccccc----------C---H----HHHHHHHhcCCcEE--Ee-------cCCCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence            99743211          0   1    33444445899887  33       123 378999999999999998777776


Q ss_pred             C----CC-CCCCHHHHH-HHHHHHHHhcCCceE-EEEeCCCcCc---HHHHHHHHHHcCCC--EEeecc
Q 014369          298 D----TI-GVGTPGTVV-PMLEAVMAVVPVEKL-AVHLHDTYGQ---SLPNILISLQMGIS--TVDCSV  354 (426)
Q Consensus       298 D----T~-G~~~P~~v~-~li~~l~~~~p~~~i-~~H~HNd~Gl---A~ANaLaAl~aGa~--~VD~Sv  354 (426)
                      -    +. ++ .++.+. .-+..+++.+.. +| +.=.|- .|.   ...-+.+|+..||+  .|+.=+
T Consensus       165 ~RG~~~~~~y-~~~~v~L~ai~~lk~~~~~-pVi~d~sH~-~g~~~~v~~~~~aAva~Ga~Gl~iE~H~  230 (262)
T 1zco_A          165 ERGIRTFETA-TRFTLDISAVPVVKELSHL-PIIVDPSHP-AGRRSLVIPLAKAAYAIGADGIMVEVHP  230 (262)
T ss_dssp             ECCBCCSCCS-SSSBCCTTHHHHHHHHBSS-CEEECSSTT-TCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             ECCCCCCCCc-ChhhcCHHHHHHHHhhhCC-CEEEEcCCC-CCccchHHHHHHHHHHcCCCEEEEEecC
Confidence            6    53 44 455444 567777776542 34 444443 222   22557789999999  887653

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=94.69  E-value=0.41  Score=44.22  Aligned_cols=172  Identities=14%  Similarity=0.114  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEec
Q 014369          149 VKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      +-.++++.+.+.|++.|.+-    .+..     .. .. +.++.+++..+..+.+  .+++.++++.++++|++.|.+..
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~-----~~-~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~  104 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGR-----GS-NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGT  104 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTS-----CC-CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccC-----CC-hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence            55789999999999999983    3321     11 22 4555555434455444  23677889999999999998863


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee---cCCCCCC----CCHHHHHHHHHHHHhCCCCEEE
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV---GCPVEGA----IPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f---g~pd~~r----~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                      .                .+.+...+.+..+..|..+...+..-.   +.....+    .+. ...+.++.+.++|++.|.
T Consensus       105 ~----------------~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~  167 (244)
T 2y88_A          105 A----------------ALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFV  167 (244)
T ss_dssp             H----------------HHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHHTTCCCEE
T ss_pred             h----------------HhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHhCCCCEEE
Confidence            2                122222233333444433332222110   0000000    011 345667778889999888


Q ss_pred             EcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHc---CCCEE
Q 014369          296 LGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM---GISTV  350 (426)
Q Consensus       296 l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~a---Ga~~V  350 (426)
                      +-+..  |...+. -.++++.+++..+ .+|..=    =|... .++..++++   ||+.|
T Consensus       168 ~~~~~~~~~~~g~-~~~~~~~l~~~~~-ipvia~----GGI~~~~d~~~~~~~~~~Gad~v  222 (244)
T 2y88_A          168 VTDITKDGTLGGP-NLDLLAGVADRTD-APVIAS----GGVSSLDDLRAIATLTHRGVEGA  222 (244)
T ss_dssp             EEETTTTTTTSCC-CHHHHHHHHTTCS-SCEEEE----SCCCSHHHHHHHHTTGGGTEEEE
T ss_pred             EEecCCccccCCC-CHHHHHHHHHhCC-CCEEEE----CCCCCHHHHHHHHhhccCCCCEE
Confidence            76522  222111 2345666666543 234332    25553 777777777   87755

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=94.69  E-value=0.52  Score=47.70  Aligned_cols=177  Identities=14%  Similarity=0.113  Sum_probs=112.6

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHh---cCCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.+..+++++.+.++|++.|=.+.|-   +|.....+ .. +-++.++.   -.++.+.+=......++.+.+. ++.+.
T Consensus       154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl-~~-egl~~L~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~lk  230 (385)
T 3nvt_A          154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGL-GL-EGLKILKRVSDEYGLGVISEIVTPADIEVALDY-VDVIQ  230 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCC-TH-HHHHHHHHHHHHHTCEEEEECCSGGGHHHHTTT-CSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCC-CH-HHHHHHHHHHHHcCCEEEEecCCHHHHHHHHhh-CCEEE
Confidence            78889999999999999999888653   12111111 11 22233332   1344444434567888888777 99988


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |....-.                + .++++++.+.|.+|.  ++.       +. .+++++...++.+.+.|...|.|+.
T Consensus       231 Igs~~~~----------------n-~~LL~~~a~~gkPVi--lk~-------G~~~t~~e~~~Ave~i~~~Gn~~i~L~~  284 (385)
T 3nvt_A          231 IGARNMQ----------------N-FELLKAAGRVDKPIL--LKR-------GLSATIEEFIGAAEYIMSQGNGKIILCE  284 (385)
T ss_dssp             ECGGGTT----------------C-HHHHHHHHTSSSCEE--EEC-------CTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             ECccccc----------------C-HHHHHHHHccCCcEE--Eec-------CCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence            8643111                0 156667778899886  331       23 6899999999999999998788877


Q ss_pred             C--CCCCC--HHHH-HHHHHHHHHhcCCce-EEEEeCC--CcCcHHHHHHHHHHcCCC--EEee
Q 014369          299 T--IGVGT--PGTV-VPMLEAVMAVVPVEK-LAVHLHD--TYGQSLPNILISLQMGIS--TVDC  352 (426)
Q Consensus       299 T--~G~~~--P~~v-~~li~~l~~~~p~~~-i~~H~HN--d~GlA~ANaLaAl~aGa~--~VD~  352 (426)
                      -  ..+=+  ++.+ -..+..+++.+.. + +.=|.|.  +..+-..-+++|+.+||+  .|+.
T Consensus       285 rG~s~yp~~~~~~ldl~~i~~lk~~~~l-pV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~  347 (385)
T 3nvt_A          285 RGIRTYEKATRNTLDISAVPILKKETHL-PVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV  347 (385)
T ss_dssp             CCBCCSCCSSSSBCCTTHHHHHHHHBSS-CEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred             CCCCCCCCCCccccCHHHHHHHHHhcCC-CEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence            4  22211  2222 1125567776532 3 4447774  344556789999999999  8866

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=94.65  E-value=0.23  Score=46.51  Aligned_cols=195  Identities=14%  Similarity=0.107  Sum_probs=97.8

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C--------Ch-----------hhHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P--------NL-----------KGFEA  209 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~--------~~-----------~di~~  209 (426)
                      .+.++.+.++|++.||+.......+.+  .+.+++.+.++. .++++.++.  +        +.           +.++.
T Consensus        20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~l~~-~gl~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~   96 (290)
T 2qul_A           20 PATAKRIAGLGFDLMEISLGEFHNLSD--AKKRELKAVADD-LGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDD   96 (290)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTGGGSCH--HHHHHHHHHHHH-HTCEEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEecCCccccch--hhHHHHHHHHHH-cCCceEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            445666778999999997542111000  123333333332 345555432  1        11           13456


Q ss_pred             HHHcCCCEEEEec----cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          210 AIAAGAKEVAIFA----SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       210 a~~~Gv~~V~i~~----~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      |.+.|++.|.+..    ...............+...+.+.++.++|++.|+++.  +...-..+...-.+++.+.++++.
T Consensus        97 a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~~  174 (290)
T 2qul_A           97 CHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYA--LEVVNRFEQWLCNDAKEAIAFADA  174 (290)
T ss_dssp             HHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEE--EECCCTTTCSSCCSHHHHHHHHHH
T ss_pred             HHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCccccccccCCHHHHHHHHHH
Confidence            6778999887643    1100000000000124455666677888999998655  332100011112467777776654


Q ss_pred             HHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          286 LHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       286 l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                      +   +.+ .=..-|+.=...-.  .+..+.+++..+- -..+|+||..+                     .       .+
T Consensus       175 ~---~~~~~g~~~D~~h~~~~g--~d~~~~l~~~~~~-i~~vH~~D~~~---------------------~-------~~  220 (290)
T 2qul_A          175 V---DSPACKVQLDTFHMNIEE--TSFRDAILACKGK-MGHFHLGEANR---------------------L-------PP  220 (290)
T ss_dssp             H---CCTTEEEEEEHHHHHHHC--SCHHHHHHHTTTT-EEEEEECCTTS---------------------C-------CT
T ss_pred             c---CCCCEEEEEEchhhhhcC--CCHHHHHHHHHhh-eeEEEEccCCC---------------------C-------CC
Confidence            4   322 22234652111000  0122333332233 47889998742                     1       12


Q ss_pred             CCCCcccHHHHHHHHHhCCCC
Q 014369          365 GASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       365 graGNa~lEevv~~L~~lG~~  385 (426)
                      | .|..+.+.++..|+..|++
T Consensus       221 G-~G~id~~~~~~~L~~~gy~  240 (290)
T 2qul_A          221 G-EGRLPWDEIFGALKEIGYD  240 (290)
T ss_dssp             T-SSCSCHHHHHHHHHHTTCC
T ss_pred             C-CCCcCHHHHHHHHHHhCCC
Confidence            3 5889999999999987764

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=94.64  E-value=0.65  Score=46.04  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=87.4

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r  273 (426)
                      .++|.++|.|.|.|-..-        |+.  ++...+|-+.++=.+.+.++++.+|+.   .+.|.+-++....  ..+.
T Consensus       158 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~--~~~g  235 (349)
T 3hgj_A          158 ARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW--GEGG  235 (349)
T ss_dssp             HHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCC--STTS
T ss_pred             HHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccc--cCCC
Confidence            356678999988887543        121  122345667777777777888888775   3456655653211  1134


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCC--CCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDT--IGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-  346 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT--~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-  346 (426)
                      .+++...++++.+.++|+|.|.+...  ...    ..|....++++.+++.++. +|..=.--   .....+..+++.| 
T Consensus       236 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi---~t~e~a~~~l~~G~  311 (349)
T 3hgj_A          236 WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGL-RTGAVGLI---TTPEQAETLLQAGS  311 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCC-EEEECSSC---CCHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCc-eEEEECCC---CCHHHHHHHHHCCC
Confidence            67888999999999999999998751  111    1132345677888887653 34332210   1356778889999 


Q ss_pred             CCEE
Q 014369          347 ISTV  350 (426)
Q Consensus       347 a~~V  350 (426)
                      ||.|
T Consensus       312 aD~V  315 (349)
T 3hgj_A          312 ADLV  315 (349)
T ss_dssp             CSEE
T ss_pred             ceEE
Confidence            8866

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=94.59  E-value=0.68  Score=43.91  Aligned_cols=109  Identities=24%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  338 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN  338 (426)
                      ++.+.|+|.. ..+.+.-..-++.+.+.|||.|-+.=-+|.   ..-..+.+-|+.+++..+...+=+=.=..+ |--..
T Consensus        81 v~tVigFP~G-~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~-Lt~ee  158 (239)
T 3ngj_A           81 VCTVIGFPLG-ATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY-LTNEE  158 (239)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG-SCHHH
T ss_pred             EEEEeccCCC-CCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC-CCHHH
Confidence            3445677864 445555555577788889999998877776   445667777888887765322222111111 33333


Q ss_pred             H----HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          339 I----LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       339 a----LaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      .    ..|.++|||+|.+|-+ .+        .|++.+|++-.+.+.
T Consensus       159 i~~a~~ia~~aGADfVKTSTG-f~--------~ggAt~~dv~lmr~~  196 (239)
T 3ngj_A          159 KVEVCKRCVAAGAEYVKTSTG-FG--------THGATPEDVKLMKDT  196 (239)
T ss_dssp             HHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCEEECCCC-CC--------CCCCCHHHHHHHHHh
Confidence            3    3448999999999843 32        366888887776653

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=94.59  E-value=1.4  Score=43.34  Aligned_cols=201  Identities=16%  Similarity=0.148  Sum_probs=107.3

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHH---HHhHhc---CCCc
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVM---EAVRDL---EGAR  196 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~---~~i~~~---~~~~  196 (426)
                      +=|+-+|+   =||++    .++.+..++.++.+.+.|.+.|++|.-+. |.. +.....+|+.   ..++.+   .++.
T Consensus        13 MGIlNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa-~~v~~~eE~~Rv~pvI~~l~~~~~vp   87 (314)
T 2vef_A           13 CGIINVTPDSFSDGGQ----FFALEQALQQARKLIAEGASMLDIGGESTRPGS-SYVEIEEEIQRVVPVIKAIRKESDVL   87 (314)
T ss_dssp             EEEEECCC-------------CHHHHHHHHHHHHHHTTCSEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_pred             EEEEeCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhhCCce
Confidence            34555654   46655    46888899999999999999999997432 321 1111112222   222222   3555


Q ss_pred             EEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee--cCCCCC--
Q 014369          197 LPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GCPVEG--  272 (426)
Q Consensus       197 l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f--g~pd~~--  272 (426)
                      ++.=+.+.+-+++|+++|++.|.=.-..         ..+        .++.+.++++|..+.  +++.-  |.|...  
T Consensus        88 iSIDT~~~~Va~aAl~aGa~iINDVsg~---------~~d--------~~m~~v~a~~~~~vv--lmh~~~~g~p~~~~~  148 (314)
T 2vef_A           88 ISIDTWKSQVAEAALAAGADLVNDITGL---------MGD--------EKMPHVVAEARAQVV--IMFNPVMARPQHPSS  148 (314)
T ss_dssp             EEEECSCHHHHHHHHHTTCCEEEETTTT---------CSC--------TTHHHHHHHHTCEEE--EECCHHHHCTTSTTT
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEEECCCC---------CCC--------hHHHHHHHHcCCCEE--EEecCCCCCCCCccc
Confidence            6655677888999999999877532111         000        134445677787665  44331  122210  


Q ss_pred             --------------CCC-------H-----HHHHHHHHHHHhCCC--CEEEEcCCCCC-CCHHHHHHHHHHHHHhc-CCc
Q 014369          273 --------------AIP-------P-----SKVAYVAKELHDMGC--FEISLGDTIGV-GTPGTVVPMLEAVMAVV-PVE  322 (426)
Q Consensus       273 --------------r~~-------~-----~~l~~~~~~l~~~Ga--d~I~l~DT~G~-~~P~~v~~li~~l~~~~-p~~  322 (426)
                                    ...       .     +++.+.++.+.++|+  +.|.|==-+|. -+.++-.++++.+.+-. ++.
T Consensus       149 ~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l~~~g~  228 (314)
T 2vef_A          149 LIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGY  228 (314)
T ss_dssp             TTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSS
T ss_pred             ccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHhhcCCC
Confidence                          000       1     335556677888998  35554323443 24566777777776532 333


Q ss_pred             eEEEEeCCC------c---Cc---------------H-HHHHHHHHHcCCCEEe
Q 014369          323 KLAVHLHDT------Y---GQ---------------S-LPNILISLQMGISTVD  351 (426)
Q Consensus       323 ~i~~H~HNd------~---Gl---------------A-~ANaLaAl~aGa~~VD  351 (426)
                      |+-+=.-|-      +   |+               + .|-+..|++.||++|.
T Consensus       229 PvL~G~SrKsfig~~~~~~g~~~~p~tel~~~~R~~~t~a~~~~a~~~Ga~IvR  282 (314)
T 2vef_A          229 PIFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVR  282 (314)
T ss_dssp             CBEEECSSCHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEeCccHHHhhhhccccccCCcccccchhhhhHHHHHHHHHHHHcCCcEEE
Confidence            333322220      0   21               2 3445677899999883

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=94.59  E-value=3  Score=39.04  Aligned_cols=179  Identities=14%  Similarity=0.076  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C----C----hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P----N----LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----~----~~di~~a~~~  213 (426)
                      ..+.++..++++...+.|+..|-+-    |.|+|      .   ..+.+.++++.+.+  |    +    ...++. ++.
T Consensus        13 ~~t~~~i~~l~~~A~~~~~~aVcv~----p~~v~------~---a~~~l~gv~v~tvigFP~G~~~~~~k~~E~~~-i~~   78 (226)
T 1vcv_A           13 YLTVDEAVAGARKAEELGVAAYCVN----PIYAP------V---VRPLLRKVKLCVVADFPFGALPTASRIALVSR-LAE   78 (226)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------H---HGGGCSSSEEEEEESTTTCCSCHHHHHHHHHH-HTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH------H---HHHHhCCCeEEEEeCCCCCCCchHHHHHHHHH-HHC
Confidence            4588888899999999999887763    22221      1   11223346666554  3    1    136778 899


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |+++|-+.+......     .-..+...+.+..+++.+++.+++|.  |      +. ...+++.+...++.+.++|+|-
T Consensus        79 GAdEID~Vinig~~~-----~g~~~~v~~ei~~v~~a~~~~~lKvI--l------Et-~~Lt~eei~~a~~ia~eaGADf  144 (226)
T 1vcv_A           79 VADEIDVVAPIGLVK-----SRRWAEVRRDLISVVGAAGGRVVKVI--T------EE-PYLRDEERYTLYDIIAEAGAHF  144 (226)
T ss_dssp             TCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTTTSEEEEE--C------CG-GGCCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCEEEEecchhhhc-----CCCHHHHHHHHHHHHHHHcCCCceEE--E------ec-cCCCHHHHHHHHHHHHHcCCCE
Confidence            999999998765421     22457778888888888876555554  1      11 2345788999999999999998


Q ss_pred             EEEc--CC----------CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc---CCC----EEeec
Q 014369          294 ISLG--DT----------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM---GIS----TVDCS  353 (426)
Q Consensus       294 I~l~--DT----------~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a---Ga~----~VD~S  353 (426)
                      |--.  =+          .|.++|+++.-|-+.++. .+. .+.+-.---.-. ...+++=+++   |++    +|=+|
T Consensus       145 VKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~-~g~-~v~vKaaGGirt-~~~al~~i~a~~~Ga~~~~fRiGtS  220 (226)
T 1vcv_A          145 IKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE-KGY-RLGVKMAGGIRT-REQAKAIVDAIGWGEDPARVRLGTS  220 (226)
T ss_dssp             EECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH-HTC-CCEEEEESSCCS-HHHHHHHHHHHCSCSCTTTEEEEES
T ss_pred             EEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHH-hCC-CceEEEeCCCCC-HHHHHHHHHHHHCCCCcCCceEecC
Confidence            8765  23          366788898766555443 332 233332211111 3445555555   999    88554

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=94.43  E-value=3.3  Score=38.81  Aligned_cols=198  Identities=11%  Similarity=0.014  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcC-CCcEEEEeCCh-h-------------hHH
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLE-GARLPVLTPNL-K-------------GFE  208 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~-~~~l~~l~~~~-~-------------di~  208 (426)
                      .++.++-+..+.+.|.|.||+=.-.-.    . .+.+++.+.++   +.. +..+..-.|.. +             =++
T Consensus        16 ~~e~~~~~~~~~~~~~D~vElRvD~l~----~-~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   90 (238)
T 1sfl_A           16 IEETLIQKINHRIDAIDVLELRIDQFE----N-VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLIS   90 (238)
T ss_dssp             --CHHHHHHHHTTTTCSEEEEECTTST----T-CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCCEEEEEecccc----c-CCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHH
Confidence            344455566677889999999642111    1 13444544443   322 34444334421 1             145


Q ss_pred             HHHHc-CCCEEEEeccC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          209 AAIAA-GAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       209 ~a~~~-Gv~~V~i~~~~--Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      .+++. +++.|-|-...  .+               +.+.++++.+++.|.+|.+..=. |    ....+.+.+.+..+.
T Consensus        91 ~~~~~~~~d~iDvEl~~~~~~---------------~~~~~l~~~~~~~~~kvI~S~Hd-f----~~tp~~~el~~~~~~  150 (238)
T 1sfl_A           91 DLANINGIDMIDIEWQADIDI---------------EKHQRIITHLQQYNKEVIISHHN-F----ESTPPLDELQFIFFK  150 (238)
T ss_dssp             HGGGCTTCCEEEEECCTTSCH---------------HHHHHHHHHHHHTTCEEEEEEEE-S----SCCCCHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEccCCCCh---------------HHHHHHHHHHHhcCCEEEEEecC-C----CCCcCHHHHHHHHHH
Confidence            56666 58999987654  32               23456778888888887743221 2    112235788889999


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      +.++|||.+-|+=+.  -.+.++..+++...+.  .+..|+-.-  +-=.+|.-.=+.+-..|-....+++.. .-    
T Consensus       151 ~~~~gaDivKia~~a--~~~~D~l~ll~~~~~~~~~~~~P~I~~--~MG~~G~~SRi~~~~~GS~~tf~~l~~-~s----  221 (238)
T 1sfl_A          151 MQKFNPEYVKLAVMP--HNKNDVLNLLQAMSTFSDTMDCKVVGI--SMSKLGLISRTAQGVFGGALTYGCIGE-PQ----  221 (238)
T ss_dssp             HHTTCCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSEEEEE--ECTGGGHHHHHTGGGGTBCEEEEBSSC-CS----
T ss_pred             HHHcCCCEEEEEecC--CCHHHHHHHHHHHHHHhhcCCCCEEEE--ECCCCchHHHHHHHHhCCCeeecCCCC-CC----
Confidence            999999999998774  4588888888776542  223343332  222334455566666777777777743 22    


Q ss_pred             CCCCCcccHHHHHHHHH
Q 014369          364 KGASGNVATEDVVYMLS  380 (426)
Q Consensus       364 ~graGNa~lEevv~~L~  380 (426)
                        ..|+.+++++...|+
T Consensus       222 --APGQl~~~el~~~l~  236 (238)
T 1sfl_A          222 --APGQIDVTDLKAQVT  236 (238)
T ss_dssp             --STTCCBHHHHHHHHT
T ss_pred             --CCCCCCHHHHHHHHH
Confidence              467999999987775

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=94.41  E-value=0.68  Score=43.37  Aligned_cols=207  Identities=14%  Similarity=0.070  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEeccCCh
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIFASASE  226 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~~~~Sd  226 (426)
                      .-+++++.+.+.|++.|++.-....... .-.+. +.++.+++..++.+.+..  .+..+++.++++|++.|.+....-+
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~-~g~~~-~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~  108 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRDGTK-SGYDT-EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF  108 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTSSCS-SCCCH-HHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC--
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccCC-CcccH-HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh
Confidence            4578999999999999999643221100 11233 344445543455555432  5678899999999999888643210


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhcC--C-cEEEEEEee--ec---CCCCCCC--CHHHHHHHHHHHHhCCCCEEEE
Q 014369          227 AFSKSNINCSIEDSLVRYRAVAHAAKVLS--I-PVRGYVSCV--VG---CPVEGAI--PPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       227 ~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G--~-~v~~~v~~~--fg---~pd~~r~--~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                        .        ....+.+.+   .++..|  . .+...+..-  -|   ....+-.  +.....++++.+.++|++.|++
T Consensus       109 --~--------~~~~~~~~~---~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~  175 (266)
T 2w6r_A          109 --R--------EIDMRELKE---YLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILL  175 (266)
T ss_dssp             --------------CHHHHH---HCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEE
T ss_pred             --C--------CCCHHHHHH---HHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEE
Confidence              0        001222233   333444  1 222222210  00   0001100  0012345667778899999999


Q ss_pred             cC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369          297 GD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATE  373 (426)
Q Consensus       297 ~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lE  373 (426)
                      .+  ..|...... .++++.+++..+. |+-.=    -|.. ..++...+++||+.|=+.=.=+         .+.-..+
T Consensus       176 t~~~~~g~~~g~~-~~~i~~l~~~~~i-pvia~----GGI~~~ed~~~~~~~Gadgv~vgsal~---------~~~~~~~  240 (266)
T 2w6r_A          176 TSIDRDGTKSGYD-TEMIRFVRPLTTL-PIIAS----GGAGKMEHFLEAFLAGADAALAASVFH---------FREIDMR  240 (266)
T ss_dssp             EETTTTTTCSCCC-HHHHHHHGGGCCS-CEEEE----SCCCSHHHHHHHHHHTCSEEEESTTTC----------------
T ss_pred             EeecCCCCcCCCC-HHHHHHHHHHcCC-CEEEe----CCCCCHHHHHHHHHcCCHHHHccHHHH---------cCCCCHH
Confidence            55  334333222 4567777776532 33332    4555 3677777788988653322211         1223577


Q ss_pred             HHHHHHHhCCCC
Q 014369          374 DVVYMLSGLGVE  385 (426)
Q Consensus       374 evv~~L~~lG~~  385 (426)
                      ++...|...|+.
T Consensus       241 ~~~~~l~~~g~~  252 (266)
T 2w6r_A          241 ELKEYLKKHGVN  252 (266)
T ss_dssp             ------------
T ss_pred             HHHHHHHHCCCc
Confidence            777777766664

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=94.39  E-value=0.64  Score=44.61  Aligned_cols=147  Identities=20%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             ChhhHHHHHHc--CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          203 NLKGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       203 ~~~di~~a~~~--Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +.++++...+.  ....-.+.++.+-              +.   .+.+..+..+++    ++.+.|+|.+ ..+.+.-.
T Consensus        57 t~~~I~~lc~eA~~~~~aaVCV~p~~--------------V~---~a~~~L~gs~v~----v~tVigFP~G-~~~~~~Kv  114 (260)
T 3r12_A           57 TPDDIKKLCLEARENRFHGVCVNPCY--------------VK---LAREELEGTDVK----VVTVVGFPLG-ANETRTKA  114 (260)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECGGG--------------HH---HHHHHHTTSCCE----EEEEESTTTC-CSCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcEEEECHHH--------------HH---HHHHHhcCCCCe----EEEEecCCCC-CCcHHHHH
Confidence            46788776543  3345556654221              22   222233333443    4455678865 44555545


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCce----EEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          281 YVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEK----LAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~----i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .-++.+.+.|||.|-+.=-+|.+   .-..+.+-|+.+++..+..+    |+....++--. ...+..|.++|||+|=+|
T Consensus       115 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei-~~A~~ia~eaGADfVKTS  193 (260)
T 3r12_A          115 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEK-IAACVISKLAGAHFVKTS  193 (260)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHH-HHHHHHHHHTTCSEEECC
T ss_pred             HHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHH-HHHHHHHHHhCcCEEEcC
Confidence            55777888999999988788874   55778888888887754322    23333344333 234566789999999999


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          354 VAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       354 v~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                       .|.+        +|++.+|++-.+.+.
T Consensus       194 -TGf~--------~~GAT~edV~lm~~~  212 (260)
T 3r12_A          194 -TGFG--------TGGATAEDVHLMKWI  212 (260)
T ss_dssp             -CSSS--------SCCCCHHHHHHHHHH
T ss_pred             -CCCC--------CCCCCHHHHHHHHHH
Confidence             6665        467889998877775

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.36  E-value=0.95  Score=45.25  Aligned_cols=134  Identities=10%  Similarity=0.124  Sum_probs=91.8

Q ss_pred             CCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC
Q 014369          193 EGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       193 ~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~  272 (426)
                      .++.+..-.-...+++...+.|++.+-|.-.  +.        +   .+    .+++++-+.|.+|-  ++       .+
T Consensus        90 ~Gi~~~st~fD~~svd~l~~~~v~~~KI~S~--~~--------~---N~----pLL~~va~~gKPvi--Ls-------tG  143 (350)
T 3g8r_A           90 NGFKAICTPFDEESVDLIEAHGIEIIKIASC--SF--------T---DW----PLLERIARSDKPVV--AS-------TA  143 (350)
T ss_dssp             TTCEEEEEECSHHHHHHHHHTTCCEEEECSS--ST--------T---CH----HHHHHHHTSCSCEE--EE-------CT
T ss_pred             cCCcEEeccCCHHHHHHHHHcCCCEEEECcc--cc--------c---CH----HHHHHHHhhCCcEE--EE-------CC
Confidence            3454444445788899888999999998632  11        1   11    45556667899886  33       24


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEE--cCCCCCCCHHHHHH--HHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l--~DT~G~~~P~~v~~--li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      ..+.+++...++.+.+.|.+ |.|  | +.++=+|..-.+  .|..+++.+|..+|++=-|-. |-..+-+++|+.+||+
T Consensus       144 mstl~Ei~~Ave~i~~~g~~-viLlhC-~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~-g~~~~~~~AAvAlGA~  220 (350)
T 3g8r_A          144 GARREDIDKVVSFMLHRGKD-LTIMHC-VAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHED-PDLMEPIMLAVAQGAT  220 (350)
T ss_dssp             TCCHHHHHHHHHHHHTTTCC-EEEEEC-CCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCC-SSCCHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHcCCC-EEEEec-CCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCC-CCccHHHHHHHHcCCC
Confidence            56899999999999888876 555  5 345655544333  478889999877899977875 2223556899999999


Q ss_pred             EEee--ccc
Q 014369          349 TVDC--SVA  355 (426)
Q Consensus       349 ~VD~--Sv~  355 (426)
                      +|+.  |+-
T Consensus       221 vIEkH~tld  229 (350)
T 3g8r_A          221 VFEKHVGLP  229 (350)
T ss_dssp             EEEEEBCCC
T ss_pred             EEEEecCcc
Confidence            8854  544

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=94.35  E-value=0.57  Score=45.05  Aligned_cols=168  Identities=13%  Similarity=0.097  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccC
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      .+.+.-+++++.|.+. +|.||+|.|.+.+    ++|.+.+.++.                  .+|++.|+.        
T Consensus        27 P~~~~~~~~~~~l~~~-aD~IElG~PfsdP----~adGp~Iq~a~------------------~~Al~~G~~--------   75 (271)
T 1ujp_A           27 PSREGFLQAVEEVLPY-ADLLEIGLPYSDP----LGDGPVIQRAS------------------ELALRKGMS--------   75 (271)
T ss_dssp             SCHHHHHHHHHHHGGG-CSSEEEECCCCC--------CHHHHHHH------------------HHHHHTTCC--------
T ss_pred             CChHHHHHHHHHHHhc-CCEEEECCCCCCc----ccccHHHHHHH------------------HHHHHcCCC--------
Confidence            3557788899999999 9999999876532    24544443322                  256667721        


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHH---HHHHHHHHHhCCCCEEEEcCCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSK---VAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~---l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                                      ++.+.+.++..|+. .+++.+  +        +.+++-+   +.++++.+.++|+|.+.++|-.
T Consensus        76 ----------------~~~~~~~v~~ir~~~~~Pii~--m--------~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~  129 (271)
T 1ujp_A           76 ----------------VQGALELVREVRALTEKPLFL--M--------TYLNPVLAWGPERFFGLFKQAGATGVILPDLP  129 (271)
T ss_dssp             ----------------HHHHHHHHHHHHHHCCSCEEE--E--------CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCC
T ss_pred             ----------------HHHHHHHHHHHHhcCCCCEEE--E--------ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCC
Confidence                            22233444444544 445442  1        1111111   2456777778888888888764


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHH
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYML  379 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-Na~lEevv~~L  379 (426)
                          +++..++++.++++-=. .+-+-.+++ -..-.-.+++...|..++. |+.|+-+     -+.+ ..++++++..+
T Consensus       130 ----~ee~~~~~~~~~~~gl~-~i~liap~s-~~eri~~ia~~~~gfiy~v-s~~G~TG-----~~~~~~~~~~~~v~~v  197 (271)
T 1ujp_A          130 ----PDEDPGLVRLAQEIGLE-TVFLLAPTS-TDARIATVVRHATGFVYAV-SVTGVTG-----MRERLPEEVKDLVRRI  197 (271)
T ss_dssp             ----GGGCHHHHHHHHHHTCE-EECEECTTC-CHHHHHHHHTTCCSCEEEE-CC-----------------CCHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHcCCc-eEEEeCCCC-CHHHHHHHHHhCCCCEEEE-ecCcccC-----CCCCCCccHHHHHHHH
Confidence                57778888887765211 122333332 1233455566666766555 5554433     0222 13345666666


Q ss_pred             Hh
Q 014369          380 SG  381 (426)
Q Consensus       380 ~~  381 (426)
                      +.
T Consensus       198 r~  199 (271)
T 1ujp_A          198 KA  199 (271)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=94.26  E-value=0.39  Score=50.97  Aligned_cols=158  Identities=14%  Similarity=0.061  Sum_probs=95.9

Q ss_pred             EeCC----ccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEeC
Q 014369          130 VEVG----PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP  202 (426)
Q Consensus       130 ~D~T----LRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~  202 (426)
                      +.+|    ++||.+.    .+.+..++.++.+.+.|.+.|++|....     .....+++.+.++   ...++.++.=+.
T Consensus       322 ~N~Tg~dsf~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIgpg~~-----~v~~~ee~~rvv~~i~~~~~vpisIDT~  392 (566)
T 1q7z_A          322 INPAGRKKLWAEMQK----GNEEIVIKEAKTQVEKGAEVLDVNFGIE-----SQIDVRYVEKIVQTLPYVSNVPLSLDIQ  392 (566)
T ss_dssp             ECCTTCHHHHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECSSG-----GGSCHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             ecCCCChhHHHHhhc----CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHhhCCceEEEeCC
Confidence            4466    6777654    3668889999999999999999993221     1223444444444   333566666667


Q ss_pred             ChhhHHHHHHc--CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec-CCCCCCCCHHHH
Q 014369          203 NLKGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEGAIPPSKV  279 (426)
Q Consensus       203 ~~~di~~a~~~--Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg-~pd~~r~~~~~l  279 (426)
                      +.+-+++|+++  |.+.|.=.-. .             +  +++.++++.++++|..+.  ++..-+ .|....--.+++
T Consensus       393 ~~~v~eaal~~~~G~~iINdis~-~-------------~--~~~~~~~~~~~~~g~~vV--~m~~~~~~p~t~~~~~~~l  454 (566)
T 1q7z_A          393 NVDLTERALRAYPGRSLFNSAKV-D-------------E--EELEMKINLLKKYGGTLI--VLLMGKDVPKSFEERKEYF  454 (566)
T ss_dssp             CHHHHHHHHHHCSSCCEEEEEES-C-------------H--HHHHHHHHHHHHHCCEEE--EESCSSSCCCSHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCEEEECCc-c-------------h--hhHHHHHHHHHHhCCeEE--EEeCCCCCcCCHHHHHHHH
Confidence            78888999998  9886543211 1             1  344567778888998665  343211 111100014566


Q ss_pred             HHHHHHHHhCCC-CEEEE---cCCCCCCCHHHHHHHHHHHH
Q 014369          280 AYVAKELHDMGC-FEISL---GDTIGVGTPGTVVPMLEAVM  316 (426)
Q Consensus       280 ~~~~~~l~~~Ga-d~I~l---~DT~G~~~P~~v~~li~~l~  316 (426)
                      .+.++.+.++|+ +.|.|   ..++|...  +-.++++.++
T Consensus       455 ~~~~~~a~~~Gi~~~IilDPg~~~igfgk--~~~~~l~~~~  493 (566)
T 1q7z_A          455 EKALKILERHDFSDRVIFDPGVLPLGAEG--KPVEVLKTIE  493 (566)
T ss_dssp             HHHHHHHHHTTCGGGEEEECCCCCTTTTC--CHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCcEEEeCCCCcccCcH--HHHHHHHHHH
Confidence            777888889998 45554   23346666  4444444443

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=94.26  E-value=0.77  Score=44.55  Aligned_cols=203  Identities=13%  Similarity=0.116  Sum_probs=117.8

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhH--hcC-CCcEEEEe
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVR--DLE-GARLPVLT  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~--~~~-~~~l~~l~  201 (426)
                      +..+|-|+= +     ..-+.++..++++...+.  |+..|-+-    |.++      +...+.++  ..+ ++++.+.+
T Consensus        33 ~~~IDhTlL-~-----p~~T~~dI~~lc~eA~~~~~~~aaVCV~----p~~V------~~a~~~L~~~gs~~~v~v~tVi   96 (281)
T 2a4a_A           33 ICLTDHTFL-D-----ENGTEDDIRELCNESVKTCPFAAAVCVY----PKFV------KFINEKIKQEINPFKPKIACVI   96 (281)
T ss_dssp             HTTEEEECC-C-----TTCCHHHHHHHHHHHHSSSSCCSEEEEC----GGGH------HHHHHHHHHHSSSCCSEEEEEE
T ss_pred             HHHcchhcC-C-----CCCCHHHHHHHHHHHHhccCCccEEEEC----HHHH------HHHHHHhhccCCCCCceEEEEe
Confidence            456777764 2     244888888899999988  88887653    3333      23344444  222 56776655


Q ss_pred             --C----C----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHH---HHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          202 --P----N----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE---DSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       202 --~----~----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~---e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                        |    +    ...++.|++.|+++|-+.+........     ..+   +..+.+..+.+.+.  +..+-+-|.     
T Consensus        97 gFP~G~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg-----~~~~~~~v~~eI~~v~~a~~--~~~lKVIlE-----  164 (281)
T 2a4a_A           97 NFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIEN-----TDEGLKEATKLTQSVKKLLT--NKILKVIIE-----  164 (281)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHS-----HHHHHHHHHHHHHHHHTTCT--TSEEEEECC-----
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCEEEEecchHhhhCC-----ChhHHHHHHHHHHHHHHHhc--CCceEEEEe-----
Confidence              3    1    146788999999999999876543211     123   44555555555444  333332121     


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHHHHHh------cCCceEEEEeC---CCcCcHHH
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAV------VPVEKLAVHLH---DTYGQSLP  337 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P~~v~~li~~l~~~------~p~~~i~~H~H---Nd~GlA~A  337 (426)
                       ....++++.+...++.+.++|+|-|--.-  +.|.++|+++.-|.+.+++.      .+. ++++-.=   .|+--+++
T Consensus       165 -t~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~-~vgVKaaGGIrt~e~al~  242 (281)
T 2a4a_A          165 -VGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNN-KIGLKVSGGISDLNTASH  242 (281)
T ss_dssp             -HHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTT-CCEEEEESSCCSHHHHHH
T ss_pred             -cccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcccccCCC-CceEEEeCCCCCHHHHHH
Confidence             22335667688999999999999887652  33678999998888877542      021 2333221   14444444


Q ss_pred             HHHHHH-HcCCCEEeecccCCCC
Q 014369          338 NILISL-QMGISTVDCSVAGLGG  359 (426)
Q Consensus       338 NaLaAl-~aGa~~VD~Sv~GlGe  359 (426)
                      -..++. ..|.+|++....=||-
T Consensus       243 ~i~aga~~lG~~w~~~~~~RiGt  265 (281)
T 2a4a_A          243 YILLARRFLSSLACHPDNFRIGS  265 (281)
T ss_dssp             HHHHHHHHTC------CCEEEEE
T ss_pred             HHHHhhhhccccccccCceEEec
Confidence            443333 3677788777777776

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=94.20  E-value=4.2  Score=39.60  Aligned_cols=207  Identities=11%  Similarity=0.044  Sum_probs=122.0

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHH-hCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLV-SSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~-~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~  201 (426)
                      ..++|-|+      .+...+.++..++++.-. +.++..|-+    +|.|+|      ...+.++..    .++++.+.+
T Consensus        27 a~~IDhTl------L~p~~T~e~I~~lc~eA~~~~~~aaVCV----~P~~V~------~a~~~L~~~~~~~s~v~V~tVi   90 (297)
T 4eiv_A           27 LNFFEVAA------LTDGETNESVAAVCKIAAKDPAIVGVSV----RPAFVR------FIRQELVKSAPEVAGIKVCAAV   90 (297)
T ss_dssp             HTTEEEEE------CSTTCCHHHHHHHHHHHHSSSCCSEEEE----CGGGHH------HHHHTGGGTCGGGGGSEEEEEE
T ss_pred             HHhcCccC------CCCCCCHHHHHHHHHHHHhhcCcEEEEE----CHHHHH------HHHHHhcccCcCCCCCeEEEEe
Confidence            44677777      233557788788888777 677655554    343332      233334321    356776655


Q ss_pred             --C---C-----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC
Q 014369          202 --P---N-----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       202 --~---~-----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~  271 (426)
                        |   .     ....+.|++.|+++|-+.+.......  +.....+...+.+..+.+.+.  +..+-+  ..    +..
T Consensus        91 gFP~G~~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~--~~~g~~~~V~~eI~~v~~a~~--~~~lKV--Il----Et~  160 (297)
T 4eiv_A           91 NFPEGTGTPDTVSLEAVGALKDGADEIECLIDWRRMNE--NVADGESRIRLLVSEVKKVVG--PKTLKV--VL----SGG  160 (297)
T ss_dssp             STTTCCCCHHHHHHHHHHHHHTTCSEEEEECCTHHHHH--CHHHHHHHHHHHHHHHHHHHT--TSEEEE--EC----CSS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhc--ccCCcHHHHHHHHHHHHHHhc--CCceEE--EE----ecc
Confidence              3   1     13567889999999999988765422  000123455556666666664  332322  21    222


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhc---CC--------------ceEEEEeC---
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVV---PV--------------EKLAVHLH---  329 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~---p~--------------~~i~~H~H---  329 (426)
                      .-.+.+.+...++.+.++|+|-|--.--.  |.++|+++.-|.+.+++.+   |+              ..+++-.-   
T Consensus       161 ~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GG  240 (297)
T 4eiv_A          161 ELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGD  240 (297)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTT
T ss_pred             cCCcHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCC
Confidence            33456667888999999999977654432  4689999999999887542   11              13455444   


Q ss_pred             -CCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          330 -DTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       330 -Nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                       .|+-.|++-.-++-+.|-++++....=+|.
T Consensus       241 Irt~e~A~~~i~~~~elG~~wl~~~~fRiGa  271 (297)
T 4eiv_A          241 VHMAETADFLMQMIFENGPRSIVRDKFRVGG  271 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHCGGGCSTTTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCccccCCCceEecc
Confidence             445555555544445666666666665554

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*

Probab=93.96  E-value=2.4  Score=40.13  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             HHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----------Ch-----------hhHHHHHH
Q 014369          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----------NL-----------KGFEAAIA  212 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----------~~-----------~di~~a~~  212 (426)
                      ++.+.++|++.||+.......+.+  .+.+++.+.++. .++++.+.++          +.           +.++.|.+
T Consensus        42 l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~l~~~l~~-~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~  118 (309)
T 2hk0_A           42 IEKVAKLGFDIIEVAAHHINEYSD--AELATIRKSAKD-NGIILTAGIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAK  118 (309)
T ss_dssp             HHHHHHTTCSEEEEEHHHHTTSCH--HHHHHHHHHHHH-TTCEEEEECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEeccCCccccch--hhHHHHHHHHHH-cCCeEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            566778899999997532101000  123334444432 3555555321          11           23466777


Q ss_pred             cCCCEEEEeccCChHHHhhhcCC-CH----HHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          213 AGAKEVAIFASASEAFSKSNINC-SI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~-s~----~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      .|++.|.+... +.. -...-.. +.    +...+.+.++.++|++.|+++.  +...-..+...-.+++.+.++++.+ 
T Consensus       119 lG~~~v~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~~v-  193 (309)
T 2hk0_A          119 LDIHTIGGALH-SYW-PIDYSQPVDKAGDYARGVEGINGIADFANDLGINLC--IEVLNRFENHVLNTAAEGVAFVKDV-  193 (309)
T ss_dssp             TTCCEEEECTT-SCS-SCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE--EECCCTTTCSSCCSHHHHHHHHHHH-
T ss_pred             cCCCEEEeecc-ccc-cccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE--EeecccccccccCCHHHHHHHHHHc-
Confidence            89999885431 000 0000011 33    3455666677888999998654  3321000111224677777776654 


Q ss_pred             hCCCC-EEEEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          288 DMGCF-EISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       288 ~~Gad-~I~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                        +.+ .=..-|+.=...- .+..+.++.+   .+- -..+|+||...                     .       .+|
T Consensus       194 --~~~~vg~~~D~~H~~~~g~d~~~~l~~~---~~~-i~~vHl~D~~r---------------------~-------~~G  239 (309)
T 2hk0_A          194 --GKNNVKVMLDTFHMNIEEDSFGDAIRTA---GPL-LGHFHTGESNR---------------------R-------VPG  239 (309)
T ss_dssp             --TCTTEEEEEEHHHHHHHCSCHHHHHHHH---GGG-EEEEEECCTTS---------------------C-------CTT
T ss_pred             --CCCCeEEEEehhhHhhcCcCHHHHHHHH---Hhh-EEEEEeCCCCC---------------------C-------CCc
Confidence              322 2223455211110 1122333333   232 37789998620                     0       123


Q ss_pred             CCCcccHHHHHHHHHhCCCC
Q 014369          366 ASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       366 raGNa~lEevv~~L~~lG~~  385 (426)
                       .|..+.+.++..|+..|++
T Consensus       240 -~G~id~~~~~~~L~~~gy~  258 (309)
T 2hk0_A          240 -KGRMPWHEIGLALRDINYT  258 (309)
T ss_dssp             -SSCCCHHHHHHHHHHTTCC
T ss_pred             -CCccCHHHHHHHHHHcCCC
Confidence             5889999999999987764

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=93.85  E-value=0.41  Score=44.22  Aligned_cols=211  Identities=13%  Similarity=0.061  Sum_probs=112.6

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe----
Q 014369          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----  201 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----  201 (426)
                      ++-+.-.|+|..       ++.+   +.++.+.++|++.||+....     +.-.+.+++.+.++. .++++.++.    
T Consensus         6 ~lg~~~~~~~~~-------~~~~---~~l~~~~~~G~~~vEl~~~~-----~~~~~~~~~~~~l~~-~gl~~~~~~~~~~   69 (275)
T 3qc0_A            6 GLSINLATIREQ-------CGFA---EAVDICLKHGITAIAPWRDQ-----VAAIGLGEAGRIVRA-NGLKLTGLCRGGF   69 (275)
T ss_dssp             TEEEEGGGGTTT-------CCHH---HHHHHHHHTTCCEEECBHHH-----HHHHCHHHHHHHHHH-HTCEESCEEEEEC
T ss_pred             cceeeeeeccCC-------CCHH---HHHHHHHHcCCCEEEecccc-----ccccCHHHHHHHHHH-cCCceEEeecCCC
Confidence            466666666431       2444   45666789999999997521     001244555555553 244443332    


Q ss_pred             ---CCh-----------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEE
Q 014369          202 ---PNL-----------KGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVS  263 (426)
Q Consensus       202 ---~~~-----------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~  263 (426)
                         ++.           +.++.|.+.|++.|.+.....+.     -..+    .+...+.+.++.++|++.|+++..  .
T Consensus        70 ~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E  142 (275)
T 3qc0_A           70 FPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPG-----GSKNIDAARRMVVEGIAAVLPHARAAGVPLAI--E  142 (275)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCT-----TCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEE--C
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEE--e
Confidence               111           23566778899999887532110     0112    234566677778889999987652  2


Q ss_pred             eeec---CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHH
Q 014369          264 CVVG---CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNI  339 (426)
Q Consensus       264 ~~fg---~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANa  339 (426)
                      ..-.   .+...-.+++.+.++++.+-.   ..=..-|+.=...-.+   ..+.+++..| +--..+|++|...-.    
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~vg~~~D~~h~~~~~d---~~~~l~~~~~~~~i~~vH~~D~~~~~----  212 (275)
T 3qc0_A          143 PLHPMYAADRACVNTLGQALDICETLGP---GVGVAIDVYHVWWDPD---LANQIARAGKMKAILAHHICDWLVPT----  212 (275)
T ss_dssp             CCCGGGTTTTBSCCCHHHHHHHHHHHCT---TEEEEEEHHHHTTCTT---HHHHHHHHHHTTCEEEEEECBCCSSC----
T ss_pred             ECCCcccCCccccCCHHHHHHHHHHhCc---ccEEEEEhhhheeCCC---HHHHHHHcCccceEEEEEecCCCCCc----
Confidence            1100   011122467777777765542   2223345432222122   3334433333 224778999853210    


Q ss_pred             HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          340 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       340 LaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                            + +.+    .  +.+  .+| .|..+...++..|+..|++
T Consensus       213 ------~-~~~----~--~r~--~~G-~G~id~~~~~~~L~~~gy~  242 (275)
T 3qc0_A          213 ------K-DML----T--DRG--MMG-DGVIDLKGIRRRIEAAGFH  242 (275)
T ss_dssp             ------C-CSS----S--BCB--CTT-SSCCCHHHHHHHHHHTTCC
T ss_pred             ------c-ccc----C--CCc--CCC-CCccCHHHHHHHHHHcCCC
Confidence                  0 000    0  111  133 6899999999999987765

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=93.84  E-value=0.96  Score=41.60  Aligned_cols=156  Identities=8%  Similarity=0.031  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe------------CChhhHHHHHHcCCC
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT------------PNLKGFEAAIAAGAK  216 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~------------~~~~di~~a~~~Gv~  216 (426)
                      +-.++++.+.+.|+..|++..             .+.++.+++..+..+..+.            +..+.++.++++|++
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~~-------------~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad  103 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRANS-------------VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIA  103 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEES-------------HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCS
T ss_pred             hHHHHHHHHHHCCCcEeecCC-------------HHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCC
Confidence            568899999999999999862             1335556654455543221            335678899999999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI  294 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I  294 (426)
                      .|.+.......    .-+..       +.++++.+++.  ++.+.+  .         -.+++.    ++.+.++|+|.|
T Consensus       104 ~V~l~~~~~~~----~~~~~-------~~~~i~~i~~~~~~~~v~~--~---------~~t~~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          104 VIAMDCTKRDR----HDGLD-------IASFIRQVKEKYPNQLLMA--D---------ISTFDE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEEEECCSSCC----TTCCC-------HHHHHHHHHHHCTTCEEEE--E---------CSSHHH----HHHHHHTTCSEE
T ss_pred             EEEEcccccCC----CCCcc-------HHHHHHHHHHhCCCCeEEE--e---------CCCHHH----HHHHHHcCCCEE
Confidence            99876542110    00111       23556666665  555432  1         112333    666778999998


Q ss_pred             E--EcCCC-CC--CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          295 S--LGDTI-GV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       295 ~--l~DT~-G~--~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      .  +.... |.  ..+.. .++++.+++.  ..++..=    =|.. ..|+...+++||+.|
T Consensus       158 ~~~v~g~~~~~~~~~~~~-~~~i~~~~~~--~ipvia~----GGI~s~~~~~~~~~~Gad~v  212 (234)
T 1yxy_A          158 GTTLSGYTPYSRQEAGPD-VALIEALCKA--GIAVIAE----GKIHSPEEAKKINDLGVAGI  212 (234)
T ss_dssp             ECTTTTSSTTSCCSSSCC-HHHHHHHHHT--TCCEEEE----SCCCSHHHHHHHHTTCCSEE
T ss_pred             eeeccccCCCCcCCCCCC-HHHHHHHHhC--CCCEEEE----CCCCCHHHHHHHHHCCCCEE
Confidence            2  22110 11  11222 2446666654  2344432    3666 678888888998866

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=93.83  E-value=0.87  Score=42.67  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC--C--CCCCCCH--------HHHHHHHHHHHhCCCCEEEEcCCC---C
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--P--VEGAIPP--------SKVAYVAKELHDMGCFEISLGDTI---G  301 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~--p--d~~r~~~--------~~l~~~~~~l~~~Gad~I~l~DT~---G  301 (426)
                      +++.++.+++.++.|+++|.+....   .+..  +  .....+.        +.+.++++.+.+.|+. |.|--..   +
T Consensus        83 r~~~~~~~~~~i~~a~~lG~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~  158 (294)
T 3vni_A           83 RKNAKAFYTDLLKRLYKLDVHLIGG---ALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVLNRFEN  158 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEE---STTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeeec---cccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCcccC
Confidence            3467888888999999999875421   1111  1  1111222        3344555666677874 5554332   1


Q ss_pred             --CCCHHHHHHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHH
Q 014369          302 --VGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVV  376 (426)
Q Consensus       302 --~~~P~~v~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv  376 (426)
                        ..+|.++.++++.+-.  |...+.+   |.+- .|-.....+..+..-+..||..=.  .++  .|| .|..+.+.++
T Consensus       159 ~~~~~~~~~~~l~~~v~~--~~vg~~~D~~h~~~-~g~d~~~~l~~~~~~i~~vHl~D~--~r~--~pG-~G~id~~~~~  230 (294)
T 3vni_A          159 YLINTAQEGVDFVKQVDH--NNVKVMLDTFHMNI-EEDSIGGAIRTAGSYLGHLHTGEC--NRK--VPG-RGRIPWVEIG  230 (294)
T ss_dssp             SSCCSHHHHHHHHHHHCC--TTEEEEEEHHHHHH-HCSCHHHHHHHHGGGEEEEEECCT--TSC--CTT-SSSCCHHHHH
T ss_pred             cccCCHHHHHHHHHHcCC--CCEEEEEEhhhhHH-cCCCHHHHHHHhhhhEeEEEeCCC--CCC--CCC-CCCcCHHHHH
Confidence              2467777777776531  3222222   3222 122333444444222334454443  222  345 8999999999


Q ss_pred             HHHHhCCCC
Q 014369          377 YMLSGLGVE  385 (426)
Q Consensus       377 ~~L~~lG~~  385 (426)
                      ..|+..|++
T Consensus       231 ~~L~~~gy~  239 (294)
T 3vni_A          231 EALADIGYN  239 (294)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHhCCC
Confidence            999987765

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=93.83  E-value=4.8  Score=38.65  Aligned_cols=184  Identities=15%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             HHHHHHHhCCCCeEEEecCCC-CC-c--cc---------------cccCHHHHHHHhHhc---CCCcEEE-E-eCChhhH
Q 014369          152 ELIRRLVSSGLPVVEATSFVS-PK-W--VP---------------QLADARDVMEAVRDL---EGARLPV-L-TPNLKGF  207 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s-~~-~--~p---------------~~~D~~~v~~~i~~~---~~~~l~~-l-~~~~~di  207 (426)
                      +.++.+.+.|+-.|++++... +. .  -|               +....+.+.+.++..   ++..+.+ + ....+++
T Consensus        29 ~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~  108 (314)
T 2e6f_A           29 EDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEEN  108 (314)
T ss_dssp             HHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHH
T ss_pred             HHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhhcCCCcEEEEeCCCCHHHH
Confidence            445678999999999875321 10 0  01               011234444445432   2333333 2 2344443


Q ss_pred             ----HHHHHcCCC---EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          208 ----EAAIAAGAK---EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       208 ----~~a~~~Gv~---~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          +.+.+.|+|   .|.+-++.-.......++.+.+.    +.++++.+|+. +++|.+-+.     ++   .+.+.+
T Consensus       109 ~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~----~~~ii~~vr~~~~~Pv~vK~~-----~~---~~~~~~  176 (314)
T 2e6f_A          109 VAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEA----MRTYLQQVSLAYGLPFGVKMP-----PY---FDIAHF  176 (314)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHH----HHHHHHHHHHHHCSCEEEEEC-----CC---CCHHHH
T ss_pred             HHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHH----HHHHHHHHHHhcCCCEEEEEC-----CC---CCHHHH
Confidence                445567888   77776531111111223445443    33444444443 666654332     22   367888


Q ss_pred             HHHHHHHHhCC-CCEEEEcCCCCC----------------------CCH---HHHHHHHHHHHHhcCCceEEEEeCCCcC
Q 014369          280 AYVAKELHDMG-CFEISLGDTIGV----------------------GTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYG  333 (426)
Q Consensus       280 ~~~~~~l~~~G-ad~I~l~DT~G~----------------------~~P---~~v~~li~~l~~~~p~~~i~~H~HNd~G  333 (426)
                      .++++.+.++| +|.|.+.++.|.                      .-|   ....++++.+++.+|.++|-.=+    |
T Consensus       177 ~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~G----G  252 (314)
T 2e6f_A          177 DTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCG----G  252 (314)
T ss_dssp             HHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEES----S
T ss_pred             HHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEEC----C
Confidence            99999999999 999998887631                      111   12347788888877544554433    3


Q ss_pred             cH-HHHHHHHHHcCCCEEe
Q 014369          334 QS-LPNILISLQMGISTVD  351 (426)
Q Consensus       334 lA-~ANaLaAl~aGa~~VD  351 (426)
                      .. ...+.+++.+||+.|-
T Consensus       253 I~~~~da~~~l~~GAd~V~  271 (314)
T 2e6f_A          253 VYSGEDAFLHILAGASMVQ  271 (314)
T ss_dssp             CCSHHHHHHHHHHTCSSEE
T ss_pred             CCCHHHHHHHHHcCCCEEE
Confidence            22 3466777788998773

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=93.80  E-value=1  Score=43.19  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCC--CC---Ccccc---ccCHHHHHHHhHhcCCCc
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV--SP---KWVPQ---LADARDVMEAVRDLEGAR  196 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~--s~---~~~p~---~~D~~~v~~~i~~~~~~~  196 (426)
                      .++=+.=-|+||-...        .-.+.++.+.++|++.||+....  ..   .+.|.   ..+.+++.+.++. .+++
T Consensus        21 ~~~g~~~~s~~~~~~~--------~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~-~GL~   91 (305)
T 3obe_A           21 KKMGLQTYSLGQELLQ--------DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDD-AGLR   91 (305)
T ss_dssp             CCCEEEGGGGTHHHHT--------THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHH-TTCE
T ss_pred             CceEEEEEEchhhhhc--------CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHH-CCCe
Confidence            3455555667664321        23457778899999999997431  00   11121   1256666666653 3566


Q ss_pred             EEEEe-C---C----------h----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE
Q 014369          197 LPVLT-P---N----------L----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  258 (426)
Q Consensus       197 l~~l~-~---~----------~----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v  258 (426)
                      +.++. +   +          .    +.++.|.+.|++.|.+. ...+...+    ...+...+.+.++.++|+++|+++
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~----~~~~~~~~~l~~l~~~a~~~Gv~l  166 (305)
T 3obe_A           92 ISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQP-SLPRIENE----DDAKVVSEIFNRAGEITKKAGILW  166 (305)
T ss_dssp             EEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCCCSSH----HHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             EEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeC-CCCCCCCH----HHHHHHHHHHHHHHHHHHHcCCEE
Confidence            55443 1   1          1    13456677899998874 21110000    013455677778889999999876


Q ss_pred             E
Q 014369          259 R  259 (426)
Q Consensus       259 ~  259 (426)
                      .
T Consensus       167 ~  167 (305)
T 3obe_A          167 G  167 (305)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=93.77  E-value=0.75  Score=45.98  Aligned_cols=136  Identities=15%  Similarity=0.059  Sum_probs=83.5

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEee-ecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV-VGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~-fg~pd~~r~  274 (426)
                      +.|.++|.|.|.|-..-        |+.  .+...+|-+.++-.+.+.++++.+|+. |- .|.+-++.. +........
T Consensus       168 ~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~  247 (365)
T 2gou_A          168 LNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDAD  247 (365)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSS
T ss_pred             HHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCC
Confidence            45578999999996532        221  112345667776666666777776653 32 555445421 000011234


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCC--C-CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTI--G-VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~--G-~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      +.+...++++.+.++|++.|.+....  + ...|.   ++++.+++.++. +|..=.  .+  -..++..+++.| ||.|
T Consensus       248 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~---~~~~~i~~~~~i-Pvi~~G--gi--~~~~a~~~l~~g~aD~V  319 (365)
T 2gou_A          248 PILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPV---SFKRALREAYQG-VLIYAG--RY--NAEKAEQAINDGLADMI  319 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCH---HHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCSEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccH---HHHHHHHHHCCC-cEEEeC--CC--CHHHHHHHHHCCCccee
Confidence            67788999999999999999987642  1 11232   567888888764 333322  12  367889999998 8877


Q ss_pred             e
Q 014369          351 D  351 (426)
Q Consensus       351 D  351 (426)
                      -
T Consensus       320 ~  320 (365)
T 2gou_A          320 G  320 (365)
T ss_dssp             E
T ss_pred             h
Confidence            3

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=93.76  E-value=0.46  Score=48.67  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             hhhHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      .+-++...++|+.+|.+.+. .++... ..+|+.  ...+.+.++++.+++.|+. +.+.++  +|.|..   +.+.+.+
T Consensus       153 ~e~l~~L~~~G~~rislGvQS~~~~~l-~~i~R~--~~~~~~~~ai~~~r~~G~~~v~~dlI--~GlPge---t~e~~~~  224 (457)
T 1olt_A          153 LDVLDHLRAEGFNRLSMGVQDFNKEVQ-RLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAF  224 (457)
T ss_dssp             THHHHHHHHTTCCEEEEEEECCCHHHH-HHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeeccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--cCCCCC---CHHHHHH
Confidence            45678888999999998874 344333 344442  1245667888899999998 887776  566654   4788888


Q ss_pred             HHHHHHhCCCCEEEE
Q 014369          282 VAKELHDMGCFEISL  296 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l  296 (426)
                      .++.+.+++++.|.+
T Consensus       225 tl~~~~~l~~~~i~~  239 (457)
T 1olt_A          225 TLKRVAELNPDRLSV  239 (457)
T ss_dssp             HHHHHHHHCCSEEEE
T ss_pred             HHHHHHhcCcCEEEe
Confidence            899999999997765

>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2

Probab=93.73  E-value=0.65  Score=46.58  Aligned_cols=204  Identities=17%  Similarity=0.132  Sum_probs=120.2

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc--ccccCHH-----H---HHHHhHhcCCCcEEEEe-
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV--PQLADAR-----D---VMEAVRDLEGARLPVLT-  201 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~--p~~~D~~-----~---v~~~i~~~~~~~l~~l~-  201 (426)
                      +.+.+..+.  ....+....++++-.+.+-++|=-.+...-+++  ..+....     .   ....+....++.+.... 
T Consensus        28 ~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v~~~A~~~~VPVaLHlD  107 (357)
T 3qm3_A           28 KAEGFAIPAVNVVGTDSINAVLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILHTD  107 (357)
T ss_dssp             HHHTCCEEEEECCSHHHHHHHHHHHHHHTSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence            344444433  468888889999999999997654332100000  0011110     0   11111111234444433 


Q ss_pred             --CC--hhhHHHHHH-----------cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee
Q 014369          202 --PN--LKGFEAAIA-----------AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  266 (426)
Q Consensus       202 --~~--~~di~~a~~-----------~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f  266 (426)
                        ..  +..++.+++           .|...|.+=.|  .        .+.+|+++..++++++|+..|+.|++-|-..-
T Consensus       108 Hg~~~~~~~i~~~i~a~~~~~~~~~~~GFtSVMiDgS--~--------lp~eENI~~Tk~vv~~ah~~gvsVEaELG~ig  177 (357)
T 3qm3_A          108 HAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLS--E--------ESLEENLSTCEVYLQKLDALGVALEIELGCTG  177 (357)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEECCCT--T--------SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCC
T ss_pred             CCCccchHHHHHHHHHhHHHHhhhcCCCCCEEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeec
Confidence              12  234555544           46777766333  2        36789999999999999999999998777654


Q ss_pred             cCCCC----------CCCCHHHHHHHHHHHHhC-CCCEEEEc--CCCCC-------CCHHHHHHHHHHHHHhc--C---C
Q 014369          267 GCPVE----------GAIPPSKVAYVAKELHDM-GCFEISLG--DTIGV-------GTPGTVVPMLEAVMAVV--P---V  321 (426)
Q Consensus       267 g~pd~----------~r~~~~~l~~~~~~l~~~-Gad~I~l~--DT~G~-------~~P~~v~~li~~l~~~~--p---~  321 (426)
                      |.+|.          -.++|+...+++++.-.. |+|.+.++  -.=|.       +.|+...++-+.+++.+  |   .
T Consensus       178 G~Edgv~~~~~~~~~~yT~Peea~~Fv~~tg~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~~~~~~~~  257 (357)
T 3qm3_A          178 GEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKP  257 (357)
T ss_dssp             C-----CCSSTTCTTTSCCHHHHHHHHHHHTTTCSCEEEECCSSCCCSSCCSSCCCCCTHHHHHHHHHHHHHTTCSCSCC
T ss_pred             cccCCccccccccccccCCHHHHHHHHHHhCCCCcccEEEEecCCccCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCC
Confidence            44432          248999999988765322 45544432  11122       23556666666666654  2   2


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ++|.+|+=  -|........|+..|+.-|
T Consensus       258 vpLVlHGg--SG~p~e~i~~ai~~GV~Ki  284 (357)
T 3qm3_A          258 INFVFHGG--SGSELKDIKNAVSYGVIKM  284 (357)
T ss_dssp             SCEEECSC--TTCCHHHHHHHHHTTEEEE
T ss_pred             CcEEEeCC--CCCCHHHHHHHHHCCceEE
Confidence            46777765  4888999999999998755

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.71  E-value=1.4  Score=42.81  Aligned_cols=173  Identities=13%  Similarity=0.084  Sum_probs=101.2

Q ss_pred             HHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCEE
Q 014369          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKEV  218 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~V  218 (426)
                      +....+.|.+.||+=.-..   ++.++....+++.+++..++.+.+++|.               +.|++.+.++|++.|
T Consensus        52 a~~A~~gGAdRIELc~~l~---~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGv  128 (287)
T 3iwp_A           52 AVNAERGGADRIELCSGLS---EGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGL  128 (287)
T ss_dssp             HHHHHHHTCSEEEECBCGG---GTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHhCCCEEEECCCCC---CCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Confidence            4445788999999953211   1122223456677765556778888752               147889999999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      .+-+-..|..      .+    +++++++++.++.  +.+.  +-.+|   |.. .+|   .+..+.+.++|+++|--.-
T Consensus       129 VfG~L~~dg~------iD----~~~~~~Li~~a~~--l~vT--FHRAF---D~~-~d~---~~Ale~Li~lGvdrILTSG  187 (287)
T 3iwp_A          129 VFGALTEDGH------ID----KELCMSLMAICRP--LPVT--FHRAF---DMV-HDP---MAALETLLTLGFERVLTSG  187 (287)
T ss_dssp             EECCBCTTSC------BC----HHHHHHHHHHHTT--SCEE--ECGGG---GGC-SCH---HHHHHHHHHHTCSEEEECT
T ss_pred             EEeeeCCCCC------cC----HHHHHHHHHHcCC--CcEE--EECch---hcc-CCH---HHHHHHHHHcCCCEEECCC
Confidence            9986333310      11    4556677777765  4443  33334   222 234   3456677788999988733


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHH-cCCCEEeecccC
Q 014369          299 TIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQ-MGISTVDCSVAG  356 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD~Sv~G  356 (426)
                      .  .....+=.++++.+.+... .+.|-.    .=|.-..|+-.-++ +|++.||.|-..
T Consensus       188 ~--~~~a~~Gl~~Lk~Lv~~a~~rI~Ima----GGGV~~~Ni~~l~~~tG~~~~H~S~~~  241 (287)
T 3iwp_A          188 C--DSSALEGLPLIKRLIEQAKGRIVVMP----GGGITDRNLQRILEGSGATEFHCSARS  241 (287)
T ss_dssp             T--SSSTTTTHHHHHHHHHHHTTSSEEEE----CTTCCTTTHHHHHHHHCCSEEEECCEE
T ss_pred             C--CCChHHhHHHHHHHHHHhCCCCEEEE----CCCcCHHHHHHHHHhhCCCEEeECcCc
Confidence            3  2222233344444444432 223333    23555567766665 999999998654

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=93.61  E-value=2.3  Score=41.50  Aligned_cols=146  Identities=14%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             CcEEEEe-CChhhHHHHHHcCCCEEEEec-cCCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFA-SASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~-~~Sd-~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      -.+.++. .+--..+.+.++|++.|.+.- +++- .+-... .-.|.++.+..++.+.+.+   ...|.+.+      |.
T Consensus        22 ~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~---~~PviaD~------d~   92 (298)
T 3eoo_A           22 QPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNAT---NLPLLVDI------DT   92 (298)
T ss_dssp             SSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHC---CSCEEEEC------TT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhc---CCeEEEEC------CC
Confidence            4455554 344445566678999888853 3221 110111 1247889988887776553   45555322      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhc--CCceEEEEeCCC----cC
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVV--PVEKLAVHLHDT----YG  333 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~--p~~~i~~H~HNd----~G  333 (426)
                      .+ -+++.+.+.++.+.++|+..|.|-|.++           +...++....|++.++.-  ++.-|-.-+-.-    +-
T Consensus        93 Gy-g~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gld  171 (298)
T 3eoo_A           93 GW-GGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGID  171 (298)
T ss_dssp             CS-SSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHH
Confidence            32 3788999999999999999999999986           334455566666666554  332233332221    22


Q ss_pred             cHHHHHHHHHHcCCCEE
Q 014369          334 QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~V  350 (426)
                      -++.-+.+-.++|||.|
T Consensus       172 eai~Ra~ay~~AGAD~i  188 (298)
T 3eoo_A          172 AAIERAIAYVEAGADMI  188 (298)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhhHhcCCCEE
Confidence            26677778889999966

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=93.59  E-value=1.4  Score=42.37  Aligned_cols=130  Identities=11%  Similarity=0.109  Sum_probs=78.4

Q ss_pred             HHHHHHcCCC-EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          207 FEAAIAAGAK-EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       207 i~~a~~~Gv~-~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      ++.+.+.|+| .|.+-++.-.......++.+.+    .+.++++.+|+. +++|.+-+.     ++   .+.+.+.++++
T Consensus       112 a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e----~~~~iv~~vr~~~~~Pv~vKi~-----~~---~~~~~~~~~a~  179 (311)
T 1jub_A          112 LKKIQESDFSGITELNLSCPNVPGEPQLAYDFE----ATEKLLKEVFTFFTKPLGVKLP-----PY---FDLVHFDIMAE  179 (311)
T ss_dssp             HHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHH----HHHHHHHHHTTTCCSCEEEEEC-----CC---CSHHHHHHHHH
T ss_pred             HHHHHhcCCCeEEEEeccCCCCCCcccccCCHH----HHHHHHHHHHHhcCCCEEEEEC-----CC---CCHHHHHHHHH
Confidence            4555678999 7877654111111112333444    345666777665 666654332     22   36778889999


Q ss_pred             HHHhCCCCEEEEcCCCC----------------------C-CC--HHHHHHHHHHHHHhcC-CceEEEEeCCCcCcH-HH
Q 014369          285 ELHDMGCFEISLGDTIG----------------------V-GT--PGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LP  337 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G----------------------~-~~--P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA-~A  337 (426)
                      .+.++|+|.|.+.++.+                      + ..  .....++++.+++.++ .++|-.=+    |.. -.
T Consensus       180 ~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~G----GI~~~~  255 (311)
T 1jub_A          180 ILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTG----GIETGQ  255 (311)
T ss_dssp             HHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEES----SCCSHH
T ss_pred             HHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEEC----CCCCHH
Confidence            99999999999988752                      1 11  1123467888888774 44555433    222 24


Q ss_pred             HHHHHHHcCCCEEee
Q 014369          338 NILISLQMGISTVDC  352 (426)
Q Consensus       338 NaLaAl~aGa~~VD~  352 (426)
                      .+..++.+||+.|-.
T Consensus       256 da~~~l~~GAd~V~v  270 (311)
T 1jub_A          256 DAFEHLLCGATMLQI  270 (311)
T ss_dssp             HHHHHHHHTCSEEEE
T ss_pred             HHHHHHHcCCCEEEE
Confidence            666777889997743

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=93.59  E-value=0.67  Score=46.24  Aligned_cols=137  Identities=14%  Similarity=0.068  Sum_probs=86.5

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|...-        |+.  ++...+|-+.++=.+.+.++++.+|+. |  +.|.+-++.....+ .+..
T Consensus       165 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~-~G~~  243 (363)
T 3l5l_A          165 RRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG-RDEQ  243 (363)
T ss_dssp             HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS-CHHH
T ss_pred             HHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC-CCCC
Confidence            46678899988887531        222  123346777887777788888888875 3  45665565421111 1114


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCC--CC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcC-
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTI--GV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMG-  346 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~--G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aG-  346 (426)
                      +.+...++++.+.++|+|.|.+....  ..    ..|....++++.+++.+.. +|..=.    |. ....+..+++.| 
T Consensus       244 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G----gI~s~e~a~~~l~~G~  318 (363)
T 3l5l_A          244 TLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKL-PVTSAW----GFGTPQLAEAALQANQ  318 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTC-CEEECS----STTSHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCC-cEEEeC----CCCCHHHHHHHHHCCC
Confidence            57888999999999999999887521  11    1232335677788877653 333311    22 356778889999 


Q ss_pred             CCEE
Q 014369          347 ISTV  350 (426)
Q Consensus       347 a~~V  350 (426)
                      ||.|
T Consensus       319 aD~V  322 (363)
T 3l5l_A          319 LDLV  322 (363)
T ss_dssp             CSEE
T ss_pred             ccEE
Confidence            8866

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=93.53  E-value=5.5  Score=38.68  Aligned_cols=147  Identities=12%  Similarity=0.173  Sum_probs=92.6

Q ss_pred             CcEEEEe-CChhhHHHHHHcCCCEEEEecc-CCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFAS-ASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~-~Sd-~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      -.+.+++ .+--..+.+.++|++.|.+.-+ ++- .+-... .-.|.++.+..++.+.+.+.   .+|.+.+      |.
T Consensus        17 ~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~---~PviaD~------d~   87 (295)
T 1xg4_A           17 NPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCS---LPLLVDA------DI   87 (295)
T ss_dssp             SSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCC---SCEEEEC------TT
T ss_pred             CcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCC---CCEEecC------Cc
Confidence            3455554 3545556677899998887533 221 000001 13478999988887766543   4554322      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeCCC------cC
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT------YG  333 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd------~G  333 (426)
                      .+-.+++.+.+.++.+.++|+..|.|-|..+           +....+..+.|+++++......+-+-.-.|      +-
T Consensus        88 Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~  167 (295)
T 1xg4_A           88 GFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLD  167 (295)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHH
T ss_pred             ccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHH
Confidence            3334789999999999999999999999974           333345666677777664221233333333      23


Q ss_pred             cHHHHHHHHHHcCCCEE
Q 014369          334 QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~V  350 (426)
                      -++.-+.+..++||+.|
T Consensus       168 ~ai~ra~ay~eAGAd~i  184 (295)
T 1xg4_A          168 AAIERAQAYVEAGAEML  184 (295)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHcCCCEE
Confidence            47788889999999965

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=93.51  E-value=3  Score=41.28  Aligned_cols=132  Identities=12%  Similarity=0.127  Sum_probs=89.5

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak-~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++.+.+-|+..+-++..  + +.....|.+.++.++.+.+.++.++ +.|+.++.-+++.      ...+++...+.++.
T Consensus        87 l~~~~~dgV~y~Eir~~--P-~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~l~~  157 (343)
T 3rys_A           87 LERAAAGGVRHAEIMMD--P-QAHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFL------RDMSEDSALEVLDQ  157 (343)
T ss_dssp             HHHHHHTTEEEEEEEEC--H-HHHHTTTCCHHHHHHHHHHHHTTHHHHHSCEEEEEEEEE------TTSCHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEEec--H-HHhccCCCCHHHHHHHHHHHHHHHhhcCceeEEEEEEeC------CCCCHHHHHHHHHH
Confidence            45556778887777653  3 2223457899999998888888775 4688777544431      23467777777776


Q ss_pred             HHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEEe
Q 014369          286 LHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVD  351 (426)
Q Consensus       286 l~~~--Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD  351 (426)
                      +.++  ++..|-|+-.-....|..+.+.++..++.  +.++.+|+..+.+  ..+...|+. .|+++|+
T Consensus       158 a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rIg  222 (343)
T 3rys_A          158 LLAMHAPIAGIGLDSAEVGNPPSKFERLYQRAAEA--GLRRIAHAGEEGP--ASYITEALDVLHVERID  222 (343)
T ss_dssp             HHHTTCCCCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESSSSC--HHHHHHHHHTSCCSEEE
T ss_pred             HHhCCCCEEEEecCCcccCCCHHHHHHHHHHHHHC--CCeEEEeeCCCCC--HHHHHHHHhcCCcceee
Confidence            6665  35566665433445778888887776653  3578999988754  467888997 9999874

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=93.36  E-value=0.78  Score=45.82  Aligned_cols=139  Identities=17%  Similarity=0.076  Sum_probs=84.7

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCCC--CCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV--EGA  273 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~pd--~~r  273 (426)
                      ++|.++|.|.|.|...-        |+.  .+...+|-+.++-.+.+.++++.+|+. |- .|.+-++..-....  ...
T Consensus       168 ~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~  247 (364)
T 1vyr_A          168 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  247 (364)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCC
Confidence            34578999999986542        111  112346667777777777888887764 32 45544543200000  123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD  351 (426)
                      .+.+...++++.+.++|++.|.+....-...|..-.++++.+++.++. +|..=.  .+  ....+..+++.| ||.|-
T Consensus       248 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~i-Pvi~~G--gi--t~~~a~~~l~~g~aD~V~  321 (364)
T 1vyr_A          248 NEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHG-VIIGAG--AY--TAEKAEDLIGKGLIDAVA  321 (364)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCSEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCC-CEEEEC--Cc--CHHHHHHHHHCCCccEEE
Confidence            467788899999999999999987521000011113567888888764 343322  22  367888999998 88773

>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A

Probab=93.36  E-value=2.8  Score=41.95  Aligned_cols=193  Identities=17%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcc--ccccC-------------HHHHHHHhHhcCCCcEEEEeC---C--
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV--PQLAD-------------ARDVMEAVRDLEGARLPVLTP---N--  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~--p~~~D-------------~~~v~~~i~~~~~~~l~~l~~---~--  203 (426)
                      ....+....++++-.+++-++|=-.+...-+++  ..+..             ...+...+....++.+....-   .  
T Consensus        36 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~~  115 (358)
T 1dos_A           36 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKL  115 (358)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence            467888899999999999997654432100000  00111             011111111112344444431   2  


Q ss_pred             hhhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-
Q 014369          204 LKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-  271 (426)
Q Consensus       204 ~~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-  271 (426)
                      +..++.++++|           ...|.+=.|  .        .+.+|+++..++++++|+..|+.|++-|-.+-|.+|. 
T Consensus       116 ~~~i~~~i~a~~~~~~~~~~~gFtSVMiDgS--~--------~p~eENI~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv  185 (358)
T 1dos_A          116 LPWIDGLLDAGEKHFAATGKPLFSSHMIDLS--E--------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGV  185 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSEEEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCceEeecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccccCcCCCc
Confidence            24577666554           777766333  2        4678999999999999999999999888775444542 


Q ss_pred             ---------CCCCHHHHHHHHHHHHhCCCC-EEEEcCCCCC-----------CCHHHHHHHHHHHHHhc--CC--ceEEE
Q 014369          272 ---------GAIPPSKVAYVAKELHDMGCF-EISLGDTIGV-----------GTPGTVVPMLEAVMAVV--PV--EKLAV  326 (426)
Q Consensus       272 ---------~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~G~-----------~~P~~v~~li~~l~~~~--p~--~~i~~  326 (426)
                               -.++|+...++++++.  |+| ...|+=++|.           +.|+.+.++=+.+++.+  |.  ++|.+
T Consensus       186 ~~~~~~~~~~yT~Peea~~fv~~tt--gvd~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~g~~~~~vpLVl  263 (358)
T 1dos_A          186 DNSHMDASALYTQPEDVDYAYTELS--KISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVF  263 (358)
T ss_dssp             SCCCCCCCCCSCCHHHHHHHHHHHH--TTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhc--CCChhceEEEecccccCccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence                     1389999999887654  333 2333333332           23344444444444332  22  46777


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          327 HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       327 H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+  --|........|+..|+.-|
T Consensus       264 HG--gSG~~~e~i~~ai~~GV~Ki  285 (358)
T 1dos_A          264 HG--GSGSTAQEIKDSVSYGVVKM  285 (358)
T ss_dssp             CS--CTTCCHHHHHHHHHTTEEEE
T ss_pred             eC--CCCCCHHHHHHHHHCCCeEE
Confidence            76  45888889999999998755

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=93.31  E-value=0.57  Score=45.47  Aligned_cols=135  Identities=17%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC---HH---HHHHHHHHHHHhcCCce----EEEEeCCC
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PG---TVVPMLEAVMAVVPVEK----LAVHLHDT  331 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~---P~---~v~~li~~l~~~~p~~~----i~~H~HNd  331 (426)
                      ++.+.|.|... .+.+.-..-++.+.+.||++|-+.=-+|.+.   -.   .+.+-|+.+++..+..+    |+.-.=+|
T Consensus        92 v~tVigFP~G~-~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d  170 (281)
T 2a4a_A           92 IACVINFPYGT-DSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT  170 (281)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS
T ss_pred             EEEEeCCCCCC-CCHHHHHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            44556778654 4555444556778889999999888888544   34   66777777777654322    22222233


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC----------CCCCC------c-ChhhHH
Q 014369          332 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----------GVETN------V-DLRKLM  394 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l----------G~~~~------i-Dl~~L~  394 (426)
                      .-.=...+..|+++|||+|=+|- |.        .+|++.+|++..+.+..          |...+      | +++...
T Consensus       171 ~e~i~~A~~ia~eaGADfVKTST-Gf--------~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al  241 (281)
T 2a4a_A          171 EDLIIKTTLAVLNGNADFIKTST-GK--------VQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS  241 (281)
T ss_dssp             HHHHHHHHHHHHTTTCSEEECCC-SC--------SSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHH
Confidence            33222556778999999998885 22        24678888887776532          43322      3 455555


Q ss_pred             HHHHHHHHHhCC
Q 014369          395 LAGDFINKHLGR  406 (426)
Q Consensus       395 ~la~~v~~~~g~  406 (426)
                      +.-+...+.+|.
T Consensus       242 ~~i~aga~~lG~  253 (281)
T 2a4a_A          242 HYILLARRFLSS  253 (281)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHhhhhccc
Confidence            555555665654

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.24  E-value=2.1  Score=40.58  Aligned_cols=101  Identities=14%  Similarity=0.017  Sum_probs=60.2

Q ss_pred             HHHHHHHHhcCCcE-EEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-------------------CCCC
Q 014369          245 RAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------------GVGT  304 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v-~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-------------------G~~~  304 (426)
                      .+..+.+|+.|-+. .++++       .+..+.+...++++.+.+.|+|.|-|.=-.                   .-.+
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~-------~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~   77 (262)
T 2ekc_A            5 SDKFTELKEKREKALVSYLM-------VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIR   77 (262)
T ss_dssp             HHHHHHHHHHTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCceEEEEec-------CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCC
Confidence            34444555555443 34453       234567888999999999999988773211                   1134


Q ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCCC--cCcHHHH-HHHHHHcCCCEEee
Q 014369          305 PGTVVPMLEAVMAVVPVEKLAVHLHDT--YGQSLPN-ILISLQMGISTVDC  352 (426)
Q Consensus       305 P~~v~~li~~l~~~~p~~~i~~H~HNd--~GlA~AN-aLaAl~aGa~~VD~  352 (426)
                      ...+.++++.+++.+|..++.+=.-.+  +-.++.+ +-.+.++|++.+-.
T Consensus        78 ~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii  128 (262)
T 2ekc_A           78 FEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIV  128 (262)
T ss_dssp             HHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEE
Confidence            456778899999988666776611100  1111122 23467999996654

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=93.20  E-value=0.95  Score=41.86  Aligned_cols=201  Identities=17%  Similarity=0.086  Sum_probs=102.8

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC--C---------------hhhHHHHHHc
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP--N---------------LKGFEAAIAA  213 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--~---------------~~di~~a~~~  213 (426)
                      .+.++.+.++|++.||+....... .+.-.+.+++.+.++. .++++.++..  +               .+.++.|.+.
T Consensus        19 ~~~l~~~~~~G~~~vEl~~~~~~~-~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~l   96 (281)
T 3u0h_A           19 VLYLDLARETGYRYVDVPFHWLEA-EAERHGDAAVEAMFQR-RGLVLANLGLPLNLYDSEPVFLRELSLLPDRARLCARL   96 (281)
T ss_dssp             HHHHHHHHHTTCSEECCCHHHHHH-HHHHHCHHHHHHHHHT-TTCEECCEECCSCTTSCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEecHHHHHH-HhcccCHHHHHHHHHH-cCCceEEecccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            345666788999999997532100 0011234445544442 3455444331  1               1135667778


Q ss_pred             CCCEEEEeccCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec-----CCCCCCCCHHHHHHHHHHHH
Q 014369          214 GAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-----CPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       214 Gv~~V~i~~~~S-d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg-----~pd~~r~~~~~l~~~~~~l~  287 (426)
                      |++.|.+.+... +...+    ...+...+.+.+++++|++.|+++.  +...-.     .+...-.+++.+.++++.+ 
T Consensus        97 G~~~v~~~~~p~~~~~~~----~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v-  169 (281)
T 3u0h_A           97 GARSVTAFLWPSMDEEPV----RYISQLARRIRQVAVELLPLGMRVG--LEYVGPHHLRHRRYPFVQSLADLKTFWEAI-  169 (281)
T ss_dssp             TCCEEEEECCSEESSCHH----HHHHHHHHHHHHHHHHHGGGTCEEE--EECCCCGGGCCSSEECCCSHHHHHHHHHHH-
T ss_pred             CCCEEEEeecCCCCCcch----hhHHHHHHHHHHHHHHHHHcCCEEE--EEeccccccccccccccCCHHHHHHHHHHc-
Confidence            999988653211 10000    1234567777888899999998765  221100     0101124667776666544 


Q ss_pred             hCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 014369          288 DMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  365 (426)
Q Consensus       288 ~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  365 (426)
                        +.+.+ ..-||.=...- ....+    +.+.+..--..+|++|..+..         .+.  .+     -..  ..+|
T Consensus       170 --~~~~vg~~~D~~h~~~~g~~~~~----~~~~~~~~i~~vHl~D~~~~~---------~~~--~~-----~~~--~~~G  225 (281)
T 3u0h_A          170 --GAPNVGALVDSYHWYTAGEHEDD----LAQLPPEKVVYVHINDTRDAP---------EDA--HD-----GKR--LLPG  225 (281)
T ss_dssp             --CCTTEEEEEEHHHHHHTTCCHHH----HHTSCGGGEEEEEECBCSSCT---------TTC--CT-----TSC--BCTT
T ss_pred             --CCCCeeEEeehhHHHHcCCCHHH----HHhcCcccEEEEEecCCCCCc---------ccc--hh-----ccC--cCCC
Confidence              43222 22344211100 11122    223333334678999988732         010  00     111  1234


Q ss_pred             CCCcccHHHHHHHHHhCCCC
Q 014369          366 ASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       366 raGNa~lEevv~~L~~lG~~  385 (426)
                       .|..+...++..|+..|++
T Consensus       226 -~G~id~~~~~~~L~~~gy~  244 (281)
T 3u0h_A          226 -DGRIPLVPFLRGLYLAGYR  244 (281)
T ss_dssp             -SSSSCHHHHHHHHHHHTCC
T ss_pred             -CcCcCHHHHHHHHHHcCCC
Confidence             6899999999999986654

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=93.19  E-value=5.9  Score=37.55  Aligned_cols=221  Identities=13%  Similarity=0.047  Sum_probs=134.2

Q ss_pred             ccEEEeCCccccCCCCCCC---CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHH---HHhHhcC-CCcEE
Q 014369          126 FVKIVEVGPRDGLQNEKNT---VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM---EAVRDLE-GARLP  198 (426)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~---f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~---~~i~~~~-~~~l~  198 (426)
                      .|++-+.++..|.-..-..   =+.++.+..++.+.+.|.|.||+=.-.-.    ...+.+.+.   ..+++.. +..+.
T Consensus         7 ~~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~----~~~~~~~v~~~l~~lr~~~~~~PiI   82 (257)
T 2yr1_A            7 AIKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFR----AIDDQERVLATANGLRNIAGEIPIL   82 (257)
T ss_dssp             CEEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCT----TTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             eEEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeeccc----ccCcHHHHHHHHHHHHHhccCCCEE
Confidence            3777777777665422121   23455566677777889999999642111    112333443   3444332 44444


Q ss_pred             EEeCCh---------------hhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE
Q 014369          199 VLTPNL---------------KGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  262 (426)
Q Consensus       199 ~l~~~~---------------~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v  262 (426)
                      .-.|..               +=++.+++.| ++.|-|-....+                .+.++++.+++.|.+|.+..
T Consensus        83 ~T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~----------------~~~~l~~~~~~~~~kvI~S~  146 (257)
T 2yr1_A           83 FTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE----------------RIADVRRMTEECSVWLVVSR  146 (257)
T ss_dssp             EECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT----------------HHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh----------------hHHHHHHHHHhCCCEEEEEe
Confidence            434421               1246677888 899999764322                23466778888888877432


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHH
Q 014369          263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNIL  340 (426)
Q Consensus       263 ~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaL  340 (426)
                      =. |    ....+.+.+.+..+.+.++|||.+-|+=+.  -.+.++..+++...+.  .+..++-.-+=..  +|.-.=+
T Consensus       147 Hd-f----~~tP~~~el~~~~~~~~~~gaDivKia~~a--~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~--~G~~SRi  217 (257)
T 2yr1_A          147 HY-F----DGTPRKETLLADMRQAERYGADIAKVAVMP--KSPEDVLVLLQATEEARRELAIPLITMAMGG--LGAITRL  217 (257)
T ss_dssp             EE-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSCEEEEECTT--TTHHHHH
T ss_pred             cC-C----CCCcCHHHHHHHHHHHHhcCCCEEEEEecc--CCHHHHHHHHHHHHHHhccCCCCEEEEECCC--CcchHHH
Confidence            21 2    112235788888999999999999998774  4588888888766542  2223343322222  3355666


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      .+-..|-....+++. -.-      ..|+.+++++...|+.+
T Consensus       218 ~~~~~GS~~Tf~~l~-~~s------APGQl~~~el~~~l~~l  252 (257)
T 2yr1_A          218 AGWLFGSAVTFAVGN-QSS------APGQIPIDDVRTVLSIL  252 (257)
T ss_dssp             HGGGGTBCEEECBSS-SCS------STTCCBHHHHHHHHHHH
T ss_pred             HHHHhCCceEecCCC-CCC------CCCCCCHHHHHHHHHHH
Confidence            666777777777774 222      46799999998877654

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=93.17  E-value=0.65  Score=46.70  Aligned_cols=138  Identities=17%  Similarity=0.050  Sum_probs=84.3

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEee--ecCCCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV--VGCPVEGA  273 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~--fg~pd~~r  273 (426)
                      +.|.++|.|.|.|-..-        |+.  ++...+|-+.++-.+.+.++++.+|+. |- .|.+-++..  +. .....
T Consensus       173 ~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~-~~~~~  251 (377)
T 2r14_A          173 QRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF-GLTDD  251 (377)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT-TCCCS
T ss_pred             HHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC-CCCCC
Confidence            35567899999886532        221  123346777777777777788777764 42 565555421  10 00123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD  351 (426)
                      .+.+...++++.+.++|++.|.+..-. -...|..-.++++.+++.++. +|..=.  .+  -...+..+++.| ||.|-
T Consensus       252 ~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~i-Pvi~~G--gi--~~~~a~~~l~~g~aD~V~  326 (377)
T 2r14_A          252 EPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKG-GLIYCG--NY--DAGRAQARLDDNTADAVA  326 (377)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCSEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCC-CEEEEC--CC--CHHHHHHHHHCCCceEEe
Confidence            567888999999999999999885421 000110013567888888764 443322  23  267888899998 88773

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=93.13  E-value=0.5  Score=46.12  Aligned_cols=209  Identities=13%  Similarity=0.080  Sum_probs=123.2

Q ss_pred             HHHHHHhCCCCeEEEecC--CCCCccccc--cCHHHHHHHhHhcC-CCcEEEEe--C----C----hhhHHHHHHcCCCE
Q 014369          153 LIRRLVSSGLPVVEATSF--VSPKWVPQL--ADARDVMEAVRDLE-GARLPVLT--P----N----LKGFEAAIAAGAKE  217 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~--~s~~~~p~~--~D~~~v~~~i~~~~-~~~l~~l~--~----~----~~di~~a~~~Gv~~  217 (426)
                      -++.++++|++.|=+|..  +...+.|..  -+.++++..++.+. .+.+++++  +    +    .+-++...++|+.-
T Consensus        31 sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaag  110 (295)
T 1s2w_A           31 SARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAG  110 (295)
T ss_dssp             HHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence            355667889999999842  112233421  23456666665432 23333333  2    2    23456677899999


Q ss_pred             EEEeccCChHHHhh-----hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHHHHHHHhCC
Q 014369          218 VAIFASASEAFSKS-----NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       218 V~i~~~~Sd~~~~~-----~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~~~~l~~~G  290 (426)
                      |+|-..+.+.-.-+     +-=.+.++..++++.+++....-++.|.+--       |+.  ....+...+-++++.++|
T Consensus       111 v~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRt-------da~~a~~g~~~ai~Ra~ay~eAG  183 (295)
T 1s2w_A          111 ACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARV-------EAFIAGWGLDEALKRAEAYRNAG  183 (295)
T ss_dssp             EEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEE-------CTTTTTCCHHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee-------hHHhccccHHHHHHHHHHHHHcC
Confidence            99997764311110     1114667888888766665544455554321       111  123578888889999999


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcc
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNV  370 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa  370 (426)
                      ||.|.+.=  |.-+++++.++.+.+...+|.  + +- -..+|.-.  .-.--++|+++|-....++        |+-+.
T Consensus       184 Ad~i~~e~--~~~~~~~~~~i~~~~~~~~P~--i-~~-~~~~~~~~--~~eL~~lGv~~v~~~~~~~--------raa~~  247 (295)
T 1s2w_A          184 ADAILMHS--KKADPSDIEAFMKAWNNQGPV--V-IV-PTKYYKTP--TDHFRDMGVSMVIWANHNL--------RASVS  247 (295)
T ss_dssp             CSEEEECC--CSSSSHHHHHHHHHHTTCSCE--E-EC-CSTTTTSC--HHHHHHHTCCEEEECSHHH--------HHHHH
T ss_pred             CCEEEEcC--CCCCHHHHHHHHHHcCCCCCE--E-Ee-CCCCCCCC--HHHHHHcCCcEEEEChHHH--------HHHHH
Confidence            99999861  445678888888887644553  2 21 11233322  3344478999997777766        56778


Q ss_pred             cHHHHHHHHHhCCC
Q 014369          371 ATEDVVYMLSGLGV  384 (426)
Q Consensus       371 ~lEevv~~L~~lG~  384 (426)
                      +++++...|+.-|-
T Consensus       248 a~~~~~~~i~~~g~  261 (295)
T 1s2w_A          248 AIQQTTKQIYDDQS  261 (295)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCC
Confidence            88888888876443

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=93.09  E-value=1.5  Score=43.40  Aligned_cols=145  Identities=15%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             EEEeCChhh----HHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCC
Q 014369          198 PVLTPNLKG----FEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       198 ~~l~~~~~d----i~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~  271 (426)
                      +.+....++    .+.+.+.|+|.|.|-.+ ......+..+|.+...-.+.+.++++.+++ .+++|.+-+-  .|..+ 
T Consensus        63 QL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR--~g~~~-  139 (350)
T 3b0p_A           63 QLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR--LGLEG-  139 (350)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE--SCBTT-
T ss_pred             EeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe--cCcCc-
Confidence            334444444    34556789998887753 122233344555444444555566666655 3777765333  22211 


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCC---CCCCHH-------HHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTI---GVGTPG-------TVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNIL  340 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~---G~~~P~-------~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaL  340 (426)
                       ..+.+...++++.+.++|++.|.+-+-.   |+ .+.       .-.++++.+++.+|.++|..=+    |. ....+.
T Consensus       140 -~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~-~g~~~~~~~~~~~~~i~~ik~~~~~iPVianG----gI~s~eda~  213 (350)
T 3b0p_A          140 -KETYRGLAQSVEAMAEAGVKVFVVHARSALLAL-STKANREIPPLRHDWVHRLKGDFPQLTFVTNG----GIRSLEEAL  213 (350)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCCEEEEECSCBC-----------CCCCCHHHHHHHHHHCTTSEEEEES----SCCSHHHHH
T ss_pred             -cccHHHHHHHHHHHHHcCCCEEEEecCchhccc-CcccccCCCcccHHHHHHHHHhCCCCeEEEEC----CcCCHHHHH
Confidence             2345678899999999999999987633   22 221       1356788899888655665543    22 123444


Q ss_pred             HHHHcCCCEEee
Q 014369          341 ISLQMGISTVDC  352 (426)
Q Consensus       341 aAl~aGa~~VD~  352 (426)
                      .+++ ||+.|-.
T Consensus       214 ~~l~-GaD~V~i  224 (350)
T 3b0p_A          214 FHLK-RVDGVML  224 (350)
T ss_dssp             HHHT-TSSEEEE
T ss_pred             HHHh-CCCEEEE
Confidence            5555 8887644

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=93.08  E-value=0.87  Score=44.67  Aligned_cols=174  Identities=11%  Similarity=0.066  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCC-cEEEEeC---------C----h-hhHHHHHH
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA-RLPVLTP---------N----L-KGFEAAIA  212 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~-~l~~l~~---------~----~-~di~~a~~  212 (426)
                      +.-.+++..|.+-|++-+=..-.        +  .+++ -.+-.+.+. .+..+.|         +    . -+++.|++
T Consensus        71 ~~l~~~~~~~~~~Gvdavl~~~g--------i--~~d~-~Li~~L~~~tv~gs~~~ggl~g~~~~~d~~~~~~sVe~Avr  139 (307)
T 3fok_A           71 ELLERMAIALSRPGVDGVLGTPD--------I--IDDL-AALGLLDDKIVVGSMNRGGLRGASFEMDDRYTGYNVSSMVD  139 (307)
T ss_dssp             HHHHHHHHHHHSTTCCEEEECHH--------H--HHHH-HHTTCCTTCEEEEECCCCSCTTCTTTTSCCCCSCCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCEEEECcc--------h--hhcc-cceEEecCcccccccCccccccCCCCccccccccCHHHHHH
Confidence            44455777788899998877521        1  1121 222233332 2333444         1    1 26899999


Q ss_pred             cCCCEEEEe--ccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE-EEeee-cCCCCCCCCHHHHHHHHHHHH
Q 014369          213 AGAKEVAIF--ASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSCVV-GCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       213 ~Gv~~V~i~--~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~-v~~~f-g~pd~~r~~~~~l~~~~~~l~  287 (426)
                      .|+|-|.+.  +.. |+         ...+.|+.+.++++.|.++|+.+.+- +.+-. |.......+|+.+...++.+.
T Consensus       140 lGADaV~~l~~i~~Gs~---------~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAa  210 (307)
T 3fok_A          140 RGVDFAKTLVRINLSDA---------GTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAA  210 (307)
T ss_dssp             HTCCEEEEEEEECTTCT---------THHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCh---------hHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHH
Confidence            999986633  221 22         12478999999999999999998753 12211 221122478999999999999


Q ss_pred             hCCCC----EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEe-C--CCcCcHHHHHHHHHH-cCCCEEee
Q 014369          288 DMGCF----EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL-H--DTYGQSLPNILISLQ-MGISTVDC  352 (426)
Q Consensus       288 ~~Gad----~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~-H--Nd~GlA~ANaLaAl~-aGa~~VD~  352 (426)
                      ++|+|    .|-++=|      +.    ++.+.+..|. |+-+=+ -  +|.--.+...-.|++ +|+..+..
T Consensus       211 ELGADs~~tivK~~y~------e~----f~~Vv~a~~v-PVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~v  272 (307)
T 3fok_A          211 GLGNDSSYTWMKLPVV------EE----MERVMESTTM-PTLLLGGEGGNDPDATFASWEHALTLPGVRGLTV  272 (307)
T ss_dssp             TCSSCCSSEEEEEECC------TT----HHHHGGGCSS-CEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEE
T ss_pred             HhCCCcCCCEEEeCCc------HH----HHHHHHhCCC-CEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEee
Confidence            99999    8887544      23    3555555443 344433 2  245566777888888 79887643

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=92.91  E-value=5.2  Score=36.16  Aligned_cols=160  Identities=11%  Similarity=0.088  Sum_probs=97.2

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE------------eCChhhHHHHHHc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL------------TPNLKGFEAAIAA  213 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l------------~~~~~di~~a~~~  213 (426)
                      ..+.-.++++.+.++|.+.|++..             .+.++.++...+..+...            .+..+.++.+.++
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~~~-------------~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~   87 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRANT-------------KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES   87 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEES-------------HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHCCCeeeccCC-------------HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhC
Confidence            446778999999999999998852             133445554344444321            2445678899999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      |++.|.+....-.     ....+       +.++++.+|+.  |+.+.+  .         ..++++    ++.+.++|+
T Consensus        88 Gad~v~l~~~~~~-----~p~~~-------~~~~i~~~~~~~~~~~v~~--~---------~~t~~e----~~~~~~~G~  140 (223)
T 1y0e_A           88 QCEVIALDATLQQ-----RPKET-------LDELVSYIRTHAPNVEIMA--D---------IATVEE----AKNAARLGF  140 (223)
T ss_dssp             TCSEEEEECSCSC-----CSSSC-------HHHHHHHHHHHCTTSEEEE--E---------CSSHHH----HHHHHHTTC
T ss_pred             CCCEEEEeeeccc-----CcccC-------HHHHHHHHHHhCCCceEEe--c---------CCCHHH----HHHHHHcCC
Confidence            9999988653210     00011       23666677777  776642  1         123444    345778999


Q ss_pred             CEEEEcCC------CCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEEe
Q 014369          292 FEISLGDT------IGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVD  351 (426)
Q Consensus       292 d~I~l~DT------~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~VD  351 (426)
                      |.|.+.-.      .+.. .+. -.++++.+++.+. .++..    +=|. ...|+..++++||+.|-
T Consensus       141 d~i~~~~~g~t~~~~~~~~~~~-~~~~~~~~~~~~~-ipvia----~GGI~~~~~~~~~~~~Gad~v~  202 (223)
T 1y0e_A          141 DYIGTTLHGYTSYTQGQLLYQN-DFQFLKDVLQSVD-AKVIA----EGNVITPDMYKRVMDLGVHCSV  202 (223)
T ss_dssp             SEEECTTTTSSTTSTTCCTTHH-HHHHHHHHHHHCC-SEEEE----ESSCCSHHHHHHHHHTTCSEEE
T ss_pred             CEEEeCCCcCcCCCCCCCCCcc-cHHHHHHHHhhCC-CCEEE----ecCCCCHHHHHHHHHcCCCEEE
Confidence            98875321      1111 222 3456777777664 34444    3355 56888889999998763

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=92.84  E-value=0.75  Score=41.86  Aligned_cols=156  Identities=16%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCH---HHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEEEecc
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      -.+.++.+.+.|++.|++..+..+.     ...   .++.+.++.+   .++.+  ++.  ..++.+.++|++.|++.. 
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~v~v--~v~--~~~~~a~~~gad~v~l~~-  102 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDA-----LTGEARIKFAEKAQAACREAGVPF--IVN--DDVELALNLKADGIHIGQ-  102 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTC-----CCHHHHHHHHHHHHHHHHHHTCCE--EEE--SCHHHHHHHTCSEEEECT-
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCH-----hHHHHHHHHHHHHHHHHHHcCCeE--EEc--CHHHHHHHcCCCEEEECC-
Confidence            4678889999999999998643221     122   3334444322   12333  221  467889999999998832 


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---cCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---GDTI  300 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l---~DT~  300 (426)
                       .+.        .    +..      ..+..|. +...++.         .+++.    ++.+.+.|+|.|.+   -||.
T Consensus       103 -~~~--------~----~~~------~~~~~g~-~~~~~s~---------~t~~e----~~~a~~~g~d~v~~~~v~~t~  149 (227)
T 2tps_A          103 -EDA--------N----AKE------VRAAIGD-MILGVSA---------HTMSE----VKQAEEDGADYVGLGPIYPTE  149 (227)
T ss_dssp             -TSS--------C----HHH------HHHHHTT-SEEEEEE---------CSHHH----HHHHHHHTCSEEEECCSSCCC
T ss_pred             -Ccc--------C----HHH------HHHhcCC-cEEEEec---------CCHHH----HHHHHhCCCCEEEECCCcCCC
Confidence             110        0    111      1122454 2222221         23444    33455789999986   3543


Q ss_pred             CC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          301 GV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       301 G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      .-   ..|.. .++++.+++.++..++.+    .-|....|+..++++|++.|++.
T Consensus       150 ~~~~~~~~~~-~~~l~~~~~~~~~~pvia----~GGI~~~nv~~~~~~Ga~gv~vg  200 (227)
T 2tps_A          150 TKKDTRAVQG-VSLIEAVRRQGISIPIVG----IGGITIDNAAPVIQAGADGVSMI  200 (227)
T ss_dssp             SSSSCCCCCT-THHHHHHHHTTCCCCEEE----ESSCCTTTSHHHHHTTCSEEEES
T ss_pred             CCCCCCCccC-HHHHHHHHHhCCCCCEEE----EcCCCHHHHHHHHHcCCCEEEEh
Confidence            21   22222 344566666554234444    24566677778888999988764

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=92.82  E-value=1.6  Score=44.70  Aligned_cols=200  Identities=17%  Similarity=0.079  Sum_probs=122.1

Q ss_pred             hhHHHHHHcCCCEEEEeccCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC--------CC-
Q 014369          205 KGFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP--------VE-  271 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~S-d~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p--------d~-  271 (426)
                      +-++..+++|+.-|+|-..+. +-   |...+-=.+.++.+++++.+...+...|....+ +..+-...        |. 
T Consensus       167 ~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vI-iARTDa~~a~li~s~~d~~  245 (429)
T 1f8m_A          167 ELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVV-IARTDAEAATLITSDVDER  245 (429)
T ss_dssp             HHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEE-EEEECTTTCCEESCCCSTT
T ss_pred             HHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEE-EEEechhhhcccccccccc
Confidence            346778899999999998763 31   111111247899999998777777667765321 11111000        00 


Q ss_pred             ------------C----CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--
Q 014369          272 ------------G----AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  333 (426)
Q Consensus       272 ------------~----r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--  333 (426)
                                  +    ....+...+-+++..+ |||.|.+.  .|.-.++++.++.+.+...+|...+.+=+--.+.  
T Consensus       246 d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e--~~~~~~eei~~f~~~v~~~~P~~~La~n~sPsf~w~  322 (429)
T 1f8m_A          246 DQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWME--TGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWK  322 (429)
T ss_dssp             TGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHTTCTTCEEEEECCTTSCHH
T ss_pred             ccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeC--CCCCCHHHHHHHHHHhcccCCCceeecCCCCCCCcc
Confidence                        0    1234555555666666 99999874  2346899999999999887886445432211111  


Q ss_pred             --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC
Q 014369          334 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  407 (426)
Q Consensus       334 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~  407 (426)
                        +.   +++ .-..-++|+.++=.++.++        |+-+.++++++..++.-|...-+   . ..-.++-.+..|..
T Consensus       323 ~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~--------raa~~a~~~~a~~~~~~G~~ay~---e-~Q~~e~~~~~~g~~  390 (429)
T 1f8m_A          323 KHLDDATIAKFQKELAAMGFKFQFITLAGF--------HALNYSMFDLAYGYAQNQMSAYV---E-LQEREFAAEERGYT  390 (429)
T ss_dssp             HHCCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHHHH---H-HHHHHHHHGGGTCC
T ss_pred             cccchhhHhHHHHHHHHcCCeEEEECcHHH--------HHHHHHHHHHHHHHHHcCChHHH---H-HhHHHHhhhccCcc
Confidence              00   111 2234468999998888877        67889999999888864432111   1 12222333457888


Q ss_pred             CCCCCcccchhhh
Q 014369          408 SGSKTAIALNRIA  420 (426)
Q Consensus       408 ~~~~~pivG~~vf  420 (426)
                      .-.++.-+|.+.|
T Consensus       391 ~~~hq~~~G~~~~  403 (429)
T 1f8m_A          391 ATKHQREVGAGYF  403 (429)
T ss_dssp             TTSHHHHTTHHHH
T ss_pred             hhhhhhhhccchH
Confidence            8888888887766

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=92.76  E-value=3.6  Score=40.49  Aligned_cols=147  Identities=12%  Similarity=0.067  Sum_probs=93.8

Q ss_pred             CcEEEEe-CChhhHHHHHHcCCCEEEEec-cCCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFA-SASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~-~~Sd-~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      -.+.++. .+--..+.+.++|++.|.+.- +++- .+-... .-.|.++.+..++.+.+.++  .+.|.+.+      |.
T Consensus        39 ~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~--~~PviaD~------d~  110 (318)
T 1zlp_A           39 GSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP--NLCVVVDG------DT  110 (318)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS--SSEEEEEC------TT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc--CCCEEEeC------CC
Confidence            3455554 354555667789999988864 2331 111111 13588999998888776654  35555322      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhcCCceEEEEeCCC-cC-----
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YG-----  333 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd-~G-----  333 (426)
                      .+- +++.+.+.++++.++|+..|.|-|..+           +...++..+.|+++++......+-+-.-.| +.     
T Consensus       111 Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~  189 (318)
T 1zlp_A          111 GGG-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLE  189 (318)
T ss_dssp             CSS-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHH
Confidence            322 789999999999999999999999973           333345666778777764211233333333 22     


Q ss_pred             cHHHHHHHHHHcCCCEE
Q 014369          334 QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~V  350 (426)
                      -++.-+.+-.++||+.|
T Consensus       190 ~ai~Ra~Ay~eAGAd~i  206 (318)
T 1zlp_A          190 EGIRRANLYKEAGADAT  206 (318)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHcCCCEE
Confidence            46777888899999965

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=92.75  E-value=4.7  Score=36.96  Aligned_cols=181  Identities=13%  Similarity=0.058  Sum_probs=98.4

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCH---HHHHHHhHhcCCCcEEEEeC----Ch----hhHHHHHHcCCCEEE
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDLEGARLPVLTP----NL----KGFEAAIAAGAKEVA  219 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---~~v~~~i~~~~~~~l~~l~~----~~----~di~~a~~~Gv~~V~  219 (426)
                      .+.++.+.++|++.||+....    +|.-.+.   +++.+.++. .++++.++..    ..    +.++.|.+.|++.|.
T Consensus        33 ~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~  107 (257)
T 3lmz_A           33 DTTLKTLERLDIHYLCIKDFH----LPLNSTDEQIRAFHDKCAA-HKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIV  107 (257)
T ss_dssp             HHHHHHHHHTTCCEEEECTTT----SCTTCCHHHHHHHHHHHHH-TTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHhCCCEEEEeccc----CCCCCCHHHHHHHHHHHHH-cCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEE
Confidence            456777889999999997531    1111122   233333332 4566665542    22    356777888999998


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      +...              .   +.+.++.++|++.|+++.  +... +.+...-.+++.+.++++   +.+...=..-||
T Consensus       108 ~~p~--------------~---~~l~~l~~~a~~~gv~l~--lEn~-~~~~~~~~~~~~~~~ll~---~~~p~vg~~~D~  164 (257)
T 3lmz_A          108 GVPN--------------Y---ELLPYVDKKVKEYDFHYA--IHLH-GPDIKTYPDATDVWVHTK---DLDPRIGMCLDV  164 (257)
T ss_dssp             EEEC--------------G---GGHHHHHHHHHHHTCEEE--EECC-CTTCSSSCSHHHHHHHHT---TSCTTEEEEEEH
T ss_pred             ecCC--------------H---HHHHHHHHHHHHcCCEEE--EecC-CCcccccCCHHHHHHHHH---hCCCCccEEEch
Confidence            7532              1   234567788899998765  3321 001111245666666654   223333334564


Q ss_pred             CCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHH
Q 014369          300 IGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYM  378 (426)
Q Consensus       300 ~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~  378 (426)
                      .=...- .+..+.++.+.   +- -..+|++|..+-           +-..   .-.-       +| .|..+...++..
T Consensus       165 ~h~~~~g~d~~~~l~~~~---~~-i~~vHl~D~~~~-----------~~~~---~~~~-------~G-~G~id~~~~~~~  218 (257)
T 3lmz_A          165 GHDLRNGCDPVADLKKYH---TR-VFDMHIKDVTDS-----------SKAG---VGIE-------IG-RGKIDFPALIRM  218 (257)
T ss_dssp             HHHHHTTCCHHHHHHHHG---GG-EEEEEECEESCS-----------STTC---CEEC-------TT-SSSCCHHHHHHH
T ss_pred             hhHHHcCCCHHHHHHHhh---cc-eeEEeecccccc-----------cCCC---Cccc-------cC-CCccCHHHHHHH
Confidence            321110 01233333332   32 367899998761           0000   0111       22 588999999999


Q ss_pred             HHhCCCC
Q 014369          379 LSGLGVE  385 (426)
Q Consensus       379 L~~lG~~  385 (426)
                      |+..|++
T Consensus       219 L~~~gy~  225 (257)
T 3lmz_A          219 MREVNYT  225 (257)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9987765

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=92.72  E-value=1.1  Score=43.37  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             EEEEe-CChhhHHHHHHcCCCEEEEe-ccCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC
Q 014369          197 LPVLT-PNLKGFEAAIAAGAKEVAIF-ASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       197 l~~l~-~~~~di~~a~~~Gv~~V~i~-~~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r  273 (426)
                      +.+++ .+--..+.+.++|++.|.+. .+++-.+-... ...|.++.+..++.+.+.+.   ..|.+.+      |..+-
T Consensus        18 i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~---~pviaD~------d~Gyg   88 (275)
T 2ze3_A           18 FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVA---IPVNADI------EAGYG   88 (275)
T ss_dssp             EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCS---SCEEEEC------TTCSS
T ss_pred             eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcC---CCEEeec------CCCCC
Confidence            44443 34444556667899988886 33332111111 13588999998887776653   5665322      33333


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCC-----CCCHHHHHHHHHHHHHhcC--CceEEEEeCCCc-------------C
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIG-----VGTPGTVVPMLEAVMAVVP--VEKLAVHLHDTY-------------G  333 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----~~~P~~v~~li~~l~~~~p--~~~i~~H~HNd~-------------G  333 (426)
                      .+++.+.+.++++.++|+..|.|-|..+     +..++++.+.|+++++.-.  ++++-+-.-.|-             -
T Consensus        89 ~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~  168 (275)
T 2ze3_A           89 HAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLA  168 (275)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHH
Confidence            4789999999999999999999999974     4556778888888887621  123444444332             2


Q ss_pred             cHHHHHHHHHHcCCCEE
Q 014369          334 QSLPNILISLQMGISTV  350 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~V  350 (426)
                      -++.-+.+-.+|||+.|
T Consensus       169 ~ai~Ra~ay~eAGAd~i  185 (275)
T 2ze3_A          169 ETVRRGQAYADAGADGI  185 (275)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHCCCCEE
Confidence            35566667889999966

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*

Probab=92.72  E-value=0.93  Score=46.68  Aligned_cols=150  Identities=11%  Similarity=0.064  Sum_probs=84.6

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHH---hHhc-------C
Q 014369          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA---VRDL-------E  193 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~---i~~~-------~  193 (426)
                      +=|+-+|+   =||+      ++.+..++.++.+.+.|.+.|++|.-++.++-+.....+|+.+.   ++.+       +
T Consensus       194 MGIlNvTPDSFsDgg------~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~  267 (442)
T 3mcm_A          194 MGIVNLSNQSFSDGN------FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLI  267 (442)
T ss_dssp             EEEEECSSCC-CCCS------SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             EEEEeCCCCCCCCCC------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccC
Confidence            34666664   4554      57788899999999999999999964432111111112333222   3322       1


Q ss_pred             -CCcEEEEeCChhhHHHHHH--cCCCE-EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC
Q 014369          194 -GARLPVLTPNLKGFEAAIA--AGAKE-VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  269 (426)
Q Consensus       194 -~~~l~~l~~~~~di~~a~~--~Gv~~-V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p  269 (426)
                       ++.+++=+.+.+-+++|++  +|++. |.=. +..                 ...++++.+++.|..+.  +|..-|.|
T Consensus       268 ~~vpISIDT~~~~VaeaAL~~~aGa~i~INDV-sg~-----------------~d~~m~~v~a~~g~~vV--lMh~~G~P  327 (442)
T 3mcm_A          268 YKPLVSIDTRKLEVMQKILAKHHDIIWMINDV-ECN-----------------NIEQKAQLIAKYNKKYV--IIHNLGIT  327 (442)
T ss_dssp             SCCEEEEECCCHHHHHHHHHHHGGGCCEEEEC-CCT-----------------THHHHHHHHHHHTCEEE--EECC----
T ss_pred             CCCeEEEeCCCHHHHHHHHhhCCCCCEEEEcC-CCC-----------------CChHHHHHHHHhCCeEE--EECCCCCC
Confidence             4455555567788899999  99987 5432 210                 01355666777887665  45544433


Q ss_pred             CCCCC---------CHHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 014369          270 VEGAI---------PPSKVAYVAKELHDMGC--FEISLGDTIGV  302 (426)
Q Consensus       270 d~~r~---------~~~~l~~~~~~l~~~Ga--d~I~l~DT~G~  302 (426)
                      ..-..         =.+++.+.++.+.++|+  +.|.|==-+|.
T Consensus       328 ~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGF  371 (442)
T 3mcm_A          328 DRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYFDIGFGF  371 (442)
T ss_dssp             ------------CTHHHHHHHHHHHHHHHTCCGGGEEEECCCC-
T ss_pred             ccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCC
Confidence            21110         13567778888999998  45555223454

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=92.71  E-value=3.6  Score=39.19  Aligned_cols=121  Identities=9%  Similarity=0.002  Sum_probs=71.9

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C
Q 014369          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P  202 (426)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~  202 (426)
                      +.++=+.=-|+||-.+.    .+.   .+.++.+.++|++.||+.........+  .+.+++.+.++. .++++.++. +
T Consensus        12 ~~~~g~~~~s~~~~~~~----~~~---~~~l~~~a~~G~~~VEl~~~~~~~~~~--~~~~~~~~~l~~-~GL~v~~~~~~   81 (303)
T 3l23_A           12 GKEIGLQIYSLSQELYK----GDV---AANLRKVKDMGYSKLELAGYGKGAIGG--VPMMDFKKMAED-AGLKIISSHVN   81 (303)
T ss_dssp             CCCCEEEGGGGGGGGGS----SCH---HHHHHHHHHTTCCEEEECCEETTEETT--EEHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCceEEEEEEchhhhcc----CCH---HHHHHHHHHcCCCEEEeccccCcccCC--CCHHHHHHHHHH-cCCeEEEEecc
Confidence            34566777788885442    233   456777889999999997522110111  245666666654 455554432 1


Q ss_pred             C---------------------h-------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          203 N---------------------L-------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       203 ~---------------------~-------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                      .                     .       +.++.|.+.|++.|.+... ......    ...+...+.+.++.++|+++
T Consensus        82 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~~~~~----~~~~~~~~~l~~l~~~a~~~  156 (303)
T 3l23_A           82 PVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGCKYLIQPMM-PTITTH----DEAKLVCDIFNQASDVIKAE  156 (303)
T ss_dssp             CBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTCSEEEECSC-CCCCSH----HHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCCCCH----HHHHHHHHHHHHHHHHHHHC
Confidence            1                     1       1245667789999988532 110000    01345667778889999999


Q ss_pred             CCc--EE
Q 014369          255 SIP--VR  259 (426)
Q Consensus       255 G~~--v~  259 (426)
                      |++  +.
T Consensus       157 Gv~~~l~  163 (303)
T 3l23_A          157 GIATGFG  163 (303)
T ss_dssp             TCTTCEE
T ss_pred             CCcceEE
Confidence            998  75

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=92.67  E-value=0.49  Score=45.17  Aligned_cols=155  Identities=15%  Similarity=0.073  Sum_probs=104.2

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-d~~r~~~~~l~~~~  283 (426)
                      +|+=......+|.+-+...++-.+-        ++   .+++.++.++++|+.|.      +|.. .+....-..+.++.
T Consensus        29 ~d~Le~~g~yID~lKfg~Gt~~l~~--------~~---~l~eki~l~~~~gV~v~------~GGTl~E~~~~qg~~~~yl   91 (251)
T 1qwg_A           29 EDYLKVCGDYIDFVKFGWGTSAVID--------RD---VVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFL   91 (251)
T ss_dssp             HHHHHHHGGGCSEEEECTTGGGGSC--------HH---HHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhhhcceEEecCceeeecC--------HH---HHHHHHHHHHHcCCeEE------CCcHHHHHHHHcCcHHHHH
Confidence            4444445567899999877665432        22   25688899999999876      2220 00000012455677


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEe-------CCCcCcHHHHHHHHHHcCCCEE--eec
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHL-------HDTYGQSLPNILISLQMGISTV--DCS  353 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~~i~~H~-------HNd~GlA~ANaLaAl~aGa~~V--D~S  353 (426)
                      +.+.++|.+.|-|.|..--+.+++-.++|+.+++. +-. ..++.-       --+...-+..+...++|||+.|  ++-
T Consensus        92 ~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v-~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEar  170 (251)
T 1qwg_A           92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMV-LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR  170 (251)
T ss_dssp             HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEE-EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEE-eeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeee
Confidence            78889999999999999999999999999999886 321 233322       1244566778888999999965  442


Q ss_pred             ----ccCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          354 ----VAGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       354 ----v~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                          ..|+=+      ..|+.-.+.+-..+..++
T Consensus       171 EsG~~iGi~~------~~g~~r~d~v~~i~~~l~  198 (251)
T 1qwg_A          171 ESGKGKGLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             cccCCcccCC------CCCCCcHHHHHHHHHhCC
Confidence                226666      788988887766555443

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=92.65  E-value=3  Score=41.29  Aligned_cols=137  Identities=10%  Similarity=0.055  Sum_probs=84.3

Q ss_pred             hHHHHHHcCCCEEEEeccC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC-------H
Q 014369          206 GFEAAIAAGAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-------P  276 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~--Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~-------~  276 (426)
                      .++.+++.|+|-|-+.+..  .+.. +     ..++.++.+.++.+.|++.|+++-.-+.. ++.......+       |
T Consensus       115 sve~a~~~GADAVk~lv~~g~d~~~-e-----~~~~q~~~l~rv~~ec~~~GiPlllEil~-y~~~~~~~~~~~~a~~~p  187 (332)
T 3iv3_A          115 SIKRLKEAGADAVKFLLYYDVDGDP-Q-----VNVQKQAYIERIGSECQAEDIPFFLEILT-YDETISNNSSVEFAKVKV  187 (332)
T ss_dssp             CHHHHHHTTCSEEEEEEEECTTSCH-H-----HHHHHHHHHHHHHHHHHHHTCCEEEEEEE-CBTTBSCTTSHHHHTTHH
T ss_pred             CHHHHHHcCCCEEEEEEEcCCCchH-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEec-cCCCCCCCcchhhhccCH
Confidence            4789999999976655432  2110 0     01357888999999999999998754432 2111112344       4


Q ss_pred             HHHHHHHHHH--HhCCCCEEEEcCCC------CCC------CHHHHHHHHHHHHHhcCCceEE-EEeCCCcCcHHHHHHH
Q 014369          277 SKVAYVAKEL--HDMGCFEISLGDTI------GVG------TPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLPNILI  341 (426)
Q Consensus       277 ~~l~~~~~~l--~~~Gad~I~l~DT~------G~~------~P~~v~~li~~l~~~~p~~~i~-~H~HNd~GlA~ANaLa  341 (426)
                      +.+...++.+  .++|+|.+-+.=|.      |..      +-.+..+.++.+.+..|. |+. +=.=-+.-.-+-..-.
T Consensus       188 ~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~-P~v~lsgG~~~~~fl~~v~~  266 (332)
T 3iv3_A          188 HKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDL-PYIYLSAGVSAELFQETLVF  266 (332)
T ss_dssp             HHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSS-CEEEECTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCC-CEEEECCCCCHHHHHHHHHH
Confidence            5599999999  67799999887433      211      334555666666665543 433 2222233344555568


Q ss_pred             HHHcCC--CEE
Q 014369          342 SLQMGI--STV  350 (426)
Q Consensus       342 Al~aGa--~~V  350 (426)
                      |+++||  ..|
T Consensus       267 A~~aGa~f~Gv  277 (332)
T 3iv3_A          267 AHKAGAKFNGV  277 (332)
T ss_dssp             HHHHTCCCCEE
T ss_pred             HHHcCCCcceE
Confidence            999999  555

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=92.59  E-value=0.64  Score=44.38  Aligned_cols=184  Identities=16%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             HHHHHHHHhCCCCeEEEecC--CCCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----C--hhhHHHHHHcCCCE
Q 014369          151 VELIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----N--LKGFEAAIAAGAKE  217 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~--~s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~--~~di~~a~~~Gv~~  217 (426)
                      ---++.++++|++.|=+|..  +...+.|.  .-+.++++..++.+. .+.+.+++  +    +  .+.+++..++|+.-
T Consensus        30 ~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~~~~~~~l~~aGa~g  109 (255)
T 2qiw_A           30 TWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSPADLIAQILEAGAVG  109 (255)
T ss_dssp             HHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHHHHHHHHHHHcCCcE
Confidence            34566788999999999842  11122232  235667776666432 12233333  2    1  34456677899999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc--EEEEEEeeecCCCCCCC----CHHHHHHHHHHHHhCCC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP--VRGYVSCVVGCPVEGAI----PPSKVAYVAKELHDMGC  291 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~--v~~~v~~~fg~pd~~r~----~~~~l~~~~~~l~~~Ga  291 (426)
                      |.|-...   |...+-=.+.++..++++.+++.+++.|++  |.+..-. +   ..++.    ..+.+.+-++++.++||
T Consensus       110 v~iEd~~---~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~-~---~~g~~~~~~~~~~ai~ra~a~~eAGA  182 (255)
T 2qiw_A          110 INVEDVV---HSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDA-V---KLGADVFEDPMVEAIKRIKLMEQAGA  182 (255)
T ss_dssp             EEECSEE---GGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECH-H---HHCTTTSSSHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCC---CCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEech-h---hccCCcchHHHHHHHHHHHHHHHcCC
Confidence            9998664   322222246788999998888888877887  3322211 0   00111    25677777888999999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC-cHHHHHHHHHHcCCCEE
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-QSLPNILISLQMGISTV  350 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G-lA~ANaLaAl~aGa~~V  350 (426)
                      |.|.+.   |.-.++.+.++.    +.++. |+-+-+... + .-.-..-.--++|+++|
T Consensus       183 d~i~~e---~~~~~~~~~~i~----~~~~~-P~n~~~~~~-~~~p~~~~~eL~~lGv~~v  233 (255)
T 2qiw_A          183 RSVYPV---GLSTAEQVERLV----DAVSV-PVNITAHPV-DGHGAGDLATLAGLGVRRV  233 (255)
T ss_dssp             SEEEEC---CCCSHHHHHHHH----TTCSS-CBEEECBTT-TBBTTBCHHHHHHTTCCEE
T ss_pred             cEEEEc---CCCCHHHHHHHH----HhCCC-CEEEEecCC-CCCCCCCHHHHHHcCCCEE
Confidence            999994   343445555544    44432 333333222 2 00112224446788877

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=92.55  E-value=1.8  Score=42.99  Aligned_cols=136  Identities=21%  Similarity=0.081  Sum_probs=85.9

Q ss_pred             HHHHHcCCCEEEEecc--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|-..        .|+.  ++...+|-+.++=.+.+.++++.+|+.   .+.|.+-++... . ..+..
T Consensus       150 ~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~-~-~~~g~  227 (343)
T 3kru_A          150 KRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD-Y-MEGGI  227 (343)
T ss_dssp             HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC-S-STTSC
T ss_pred             hhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh-h-hccCc
Confidence            4567889998888631        1221  233456778887777788888888876   356766666421 1 12246


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcC--CCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGD--TIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  348 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~D--T~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~  348 (426)
                      +.+...++++.+.++ +|.|.+..  +...   ..|....++++.+++.++. +|..=.--   .....+..+++.| ||
T Consensus       228 ~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi---~t~e~Ae~~l~~G~aD  302 (343)
T 3kru_A          228 NIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNI-KTSAVGLI---TTQELAEEILSNERAD  302 (343)
T ss_dssp             CHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTC-EEEEESSC---CCHHHHHHHHHTTSCS
T ss_pred             cHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCc-ccceeeee---eHHHHHHHHHhchhhH
Confidence            789999999999999 99998841  1110   1233345677888887754 34332211   1245677888888 78


Q ss_pred             EE
Q 014369          349 TV  350 (426)
Q Consensus       349 ~V  350 (426)
                      .|
T Consensus       303 ~V  304 (343)
T 3kru_A          303 LV  304 (343)
T ss_dssp             EE
T ss_pred             HH
Confidence            66

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=92.51  E-value=5.8  Score=37.00  Aligned_cols=190  Identities=14%  Similarity=0.078  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC--------------Ch---------
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP--------------NL---------  204 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--------------~~---------  204 (426)
                      ..-.+.++.+.++|++.||+.....     .-.+.+++.+.++. .++++.++..              +.         
T Consensus        41 ~~~~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~~l~~-~gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~  114 (290)
T 2zvr_A           41 GDLRKGMELAKRVGYQAVEIAVRDP-----SIVDWNEVKILSEE-LNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIER  114 (290)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECSCG-----GGSCHHHHHHHHHH-HTCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhCCCEEEEcCCCc-----chhhHHHHHHHHHH-cCCeEEEEeccCccccCCCCCCCCCHHHHHHHHHH
Confidence            3445677778889999999986421     11345566655553 3445433321              11         


Q ss_pred             --hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          205 --KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       205 --~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                        +.++.|.+.|++.|.......      .-+.+.++.++++.+.++.+-+..-+|...+...-..+...-.+++.+.++
T Consensus       115 ~~~~i~~A~~lG~~~v~~~~~g~------~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~~~~~l  188 (290)
T 2zvr_A          115 VVKHTEVAGMFGALVIIGLVRGR------REGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTIDDALRI  188 (290)
T ss_dssp             HHHHHHHHHHHTCEEEESGGGCC------CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCCCC------CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHHHHHHH
Confidence              124556667888776221000      012234444444444433322222113322321100011122456666666


Q ss_pred             HHHHHhCCCCEE-EEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          283 AKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       283 ~~~l~~~Gad~I-~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      ++.+   +.+.+ ..-|+.=...- .+..+.++.+.   +- -..+|+||..                          . 
T Consensus       189 ~~~~---~~~~vgl~~D~~h~~~~g~d~~~~l~~~~---~~-i~~vHl~D~~--------------------------r-  234 (290)
T 2zvr_A          189 LRKI---NSNRVGILADTFHMNIEEVNIPESLKRAG---EK-LYHFHVADSN--------------------------R-  234 (290)
T ss_dssp             HHHH---CCTTEEEEEEHHHHHHHCSSHHHHHHHHG---GG-EEEEEECCTT--------------------------S-
T ss_pred             HHHc---CCCCEEEEEehhHhhhcCCCHHHHHHHhh---cc-EEEEEEcCCC--------------------------C-
Confidence            6544   32212 23355311100 11222333332   22 3677888841                          1 


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~~  385 (426)
                       ..+| .|..+.+.++..|+..|++
T Consensus       235 -~~~G-~G~id~~~~~~~L~~~gy~  257 (290)
T 2zvr_A          235 -WAPG-CGHFDFRSVFNTLKEIGYN  257 (290)
T ss_dssp             -SSTT-SSCCCHHHHHHHHHHTTCC
T ss_pred             -CCCC-CcccCHHHHHHHHHHcCCC
Confidence             1234 5889999999999987765

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=92.49  E-value=4.5  Score=38.95  Aligned_cols=179  Identities=14%  Similarity=0.081  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCC---CCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVS---PKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s---~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.+..+++++.+.++|.+.+=++.+-.   +.....+ . ++-++.+++.   .++.+..=.-....++.+.+. ++.+.
T Consensus        50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~-g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k  126 (276)
T 1vs1_A           50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL-G-LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRY-ADMLQ  126 (276)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC-T-HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHH-CSEEE
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC-C-HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHh-CCeEE
Confidence            789999999999999999987776532   2111111 1 2333333322   344444433467888888888 99999


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |....-.          -   .    .+++++-..|.+|-  ++       .+. .+++.+...++.+...|...|.|+.
T Consensus       127 Igs~~~~----------n---~----~ll~~~a~~~kPV~--lk-------~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~  180 (276)
T 1vs1_A          127 IGARNMQ----------N---F----PLLREVGRSGKPVL--LK-------RGFGNTVEELLAAAEYILLEGNWQVVLVE  180 (276)
T ss_dssp             ECGGGTT----------C---H----HHHHHHHHHTCCEE--EE-------CCTTCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ECccccc----------C---H----HHHHHHHccCCeEE--Ec-------CCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence            8743211          1   1    33444446788876  33       233 3889999999999999987777766


Q ss_pred             ----CCCCCCHHHHHHH-HHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeecc
Q 014369          299 ----TIGVGTPGTVVPM-LEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSV  354 (426)
Q Consensus       299 ----T~G~~~P~~v~~l-i~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv  354 (426)
                          |.-...++.+.-. +..+++.+.. +|.+   |.=...-+...-+++|+.+||+  .|+.=+
T Consensus       181 Rg~~~yp~y~~~~vdl~~i~~lk~~~~l-pVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          181 RGIRTFEPSTRFTLDVAAVAVLKEATHL-PVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             CCBCCSCCSSSSBCBHHHHHHHHHHBSS-CEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             CCcCCCCCcCcchhCHHHHHHHHHHhCC-CEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence                2211234444333 6777776543 4533   4323333447778889999999  887654

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=92.48  E-value=3  Score=40.07  Aligned_cols=157  Identities=13%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe----CChhhHHHHHHcCCCEEEEeccC
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----PNLKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~~~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      +-.++++...+.|...|-+-.  .+++..  ... +.++.++..-++  .++.    .....+..+.++|+|.|.+....
T Consensus        80 dp~~~A~~y~~~GA~~IsVlt--d~~~f~--Gs~-~~L~~ir~~v~l--PVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~  152 (272)
T 3tsm_A           80 DPPALAKAYEEGGAACLSVLT--DTPSFQ--GAP-EFLTAARQACSL--PALRKDFLFDPYQVYEARSWGADCILIIMAS  152 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEC--CSTTTC--CCH-HHHHHHHHTSSS--CEEEESCCCSTHHHHHHHHTTCSEEEEETTT
T ss_pred             CHHHHHHHHHHCCCCEEEEec--cccccC--CCH-HHHHHHHHhcCC--CEEECCccCCHHHHHHHHHcCCCEEEEcccc
Confidence            447799999999999997731  111110  122 344555543333  3333    34557888999999999998653


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC----C
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT----I  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT----~  300 (426)
                      =+              -+.+.+++++|+++|+.+-+.+           .+.++    ++++.++|++.|.+.-.    .
T Consensus       153 L~--------------~~~l~~l~~~a~~lGl~~lvev-----------h~~eE----l~~A~~~ga~iIGinnr~l~t~  203 (272)
T 3tsm_A          153 VD--------------DDLAKELEDTAFALGMDALIEV-----------HDEAE----MERALKLSSRLLGVNNRNLRSF  203 (272)
T ss_dssp             SC--------------HHHHHHHHHHHHHTTCEEEEEE-----------CSHHH----HHHHTTSCCSEEEEECBCTTTC
T ss_pred             cC--------------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHH----HHHHHhcCCCEEEECCCCCccC
Confidence            21              1456788899999999876322           13444    34556899998887632    2


Q ss_pred             CCCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369          301 GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQ-SLPNILISLQMGISTV  350 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V  350 (426)
                      +. .+....++    .+.+| +.++-.=    -|. ....+..+.++||+.|
T Consensus       204 ~~-dl~~~~~L----~~~ip~~~~vIae----sGI~t~edv~~l~~~Ga~gv  246 (272)
T 3tsm_A          204 EV-NLAVSERL----AKMAPSDRLLVGE----SGIFTHEDCLRLEKSGIGTF  246 (272)
T ss_dssp             CB-CTHHHHHH----HHHSCTTSEEEEE----SSCCSHHHHHHHHTTTCCEE
T ss_pred             CC-ChHHHHHH----HHhCCCCCcEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            22 23334443    34444 2222221    122 2356666778888855

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=92.46  E-value=6.8  Score=36.39  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec-CCCCCCCC----HHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHH
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEGAIP----PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVP  310 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg-~pd~~r~~----~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~  310 (426)
                      .+++.++.+++.++.|+++|.+..+..   .| .|......    .+.+.++++.+.+.|+ .|.|--..  -+|.++.+
T Consensus        96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~---~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~--~~~~~~~~  169 (290)
T 3tva_A           96 TRASRVAEMKEISDFASWVGCPAIGLH---IGFVPESSSPDYSELVRVTQDLLTHAANHGQ-AVHLETGQ--ESADHLLE  169 (290)
T ss_dssp             THHHHHHHHHHHHHHHHHHTCSEEEEC---CCCCCCTTSHHHHHHHHHHHHHHHHHHTTTC-EEEEECCS--SCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEc---CCCCcccchHHHHHHHHHHHHHHHHHHHcCC-EEEEecCC--CCHHHHHH
Confidence            356789999999999999999865311   12 12111111    1345556666677787 44554443  47888777


Q ss_pred             HHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCCEEeecccC------CC-C--CCCCCCCCCcccHHHHHHH
Q 014369          311 MLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGISTVDCSVAG------LG-G--CPYAKGASGNVATEDVVYM  378 (426)
Q Consensus       311 li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G------lG-e--cP~a~graGNa~lEevv~~  378 (426)
                      +++.+-  -|...+.+   |.+-.-|.-....+..+..=+..||..=.-      -| +  -...+| .|..+...++..
T Consensus       170 l~~~~~--~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~~i~~vHl~D~~~~~~~~~g~~~~~~~~~G-~G~id~~~~~~~  246 (290)
T 3tva_A          170 FIEDVN--RPNLGINFDPANMILYGTGNPIEALRKVARYVRSIHCKDALWAPVNERGKSWGQEVALG-TGDVGMEAYLTT  246 (290)
T ss_dssp             HHHHHC--CTTEEEEECHHHHHHTTCSCHHHHHHHHGGGEEEEEECEEECCCGGGBTTBCCEEESTT-SSSSCHHHHHHH
T ss_pred             HHHhcC--CCCEEEEeccHHHHHhCCCCHHHHHHHHHhhheEEEeccccCCCccccccccccccCCC-CceeCHHHHHHH
Confidence            777663  13322333   443221233444444443323444443321      01 0  011234 799999999999


Q ss_pred             HHhCCCC
Q 014369          379 LSGLGVE  385 (426)
Q Consensus       379 L~~lG~~  385 (426)
                      |+..|++
T Consensus       247 L~~~gy~  253 (290)
T 3tva_A          247 LWEIGYR  253 (290)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9987765

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=92.44  E-value=1.1  Score=42.83  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEEEE----------cCCCCCCCHHHHHHHHHHHHHhcCCce
Q 014369          255 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEISL----------GDTIGVGTPGTVVPMLEAVMAVVPVEK  323 (426)
Q Consensus       255 G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~I~l----------~DT~G~~~P~~v~~li~~l~~~~p~~~  323 (426)
                      +..+.+++..         .+++.+.+.++.+.+ +|+|.|.|          .|..|. .|..+.++++.+++.+. .+
T Consensus        98 ~~p~~v~l~~---------~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~-~~~~~~eii~~v~~~~~-~p  166 (311)
T 1ep3_A           98 ELPIIANVAG---------SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGT-DPEVAAALVKACKAVSK-VP  166 (311)
T ss_dssp             TSCEEEEECC---------SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGG-CHHHHHHHHHHHHHHCS-SC
T ss_pred             CCcEEEEEcC---------CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcC-CHHHHHHHHHHHHHhcC-CC
Confidence            5666655531         257888999998888 99997765          133443 78889999999998874 46


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          324 LAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       324 i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      |.+..--+..-...-+..+.++|++.|+++=
T Consensus       167 v~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~  197 (311)
T 1ep3_A          167 LYVKLSPNVTDIVPIAKAVEAAGADGLTMIN  197 (311)
T ss_dssp             EEEEECSCSSCSHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChHHHHHHHHHHHHcCCCEEEEeC
Confidence            7776653333223446677899999998853

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=92.40  E-value=5.9  Score=38.36  Aligned_cols=147  Identities=13%  Similarity=0.083  Sum_probs=94.6

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEecc-CChH-HHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFAS-ASEA-FSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  269 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~-~Sd~-~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p  269 (426)
                      +-.+.+++ .+--..+.+.++|++.|.+.-+ ++-. +-... .-.|.++.+..++.+.+.+   ..+|.+.      .|
T Consensus        20 ~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~---~~PviaD------~d   90 (287)
T 3b8i_A           20 SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVA---RLPVIAD------AD   90 (287)
T ss_dssp             SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTC---SSCEEEE------CT
T ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEE------CC
Confidence            33455444 3445556677789998887643 2211 11111 2357888888877665443   3455432      23


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHhc--CCceEEEEeCC---CcCc
Q 014369          270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIG----------VGTPGTVVPMLEAVMAVV--PVEKLAVHLHD---TYGQ  334 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G----------~~~P~~v~~li~~l~~~~--p~~~i~~H~HN---d~Gl  334 (426)
                      ..+- +++.+.+.++++.++|+..|.|-|..+          +..++++.+.|+++++.-  ++..|..-.-.   .+--
T Consensus        91 ~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~  169 (287)
T 3b8i_A           91 HGYG-NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDA  169 (287)
T ss_dssp             TCSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHH
T ss_pred             CCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHH
Confidence            3322 789999999999999999999999974          345567888888888763  34334444333   1123


Q ss_pred             HHHHHHHHHHcCCCEE
Q 014369          335 SLPNILISLQMGISTV  350 (426)
Q Consensus       335 A~ANaLaAl~aGa~~V  350 (426)
                      ++.-+.+-.+|||+.|
T Consensus       170 ai~Ra~ay~eAGAd~i  185 (287)
T 3b8i_A          170 VIQRTLAYQEAGADGI  185 (287)
T ss_dssp             HHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHcCCCEE
Confidence            7788889999999965

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=92.32  E-value=3.8  Score=38.55  Aligned_cols=110  Identities=23%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEE----EeC----C
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAV----HLH----D  330 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~----H~H----N  330 (426)
                      ++.+.|+|.. ..+.+.-..-++.+.+.|||+|-+.=-+|.   ..-..+.+-|+.+++..+..++-+    ..-    +
T Consensus        66 v~tVigFP~G-~~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t  144 (231)
T 3ndo_A           66 IAAVAGFPSG-KHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSG  144 (231)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTC
T ss_pred             EEEEecCCCC-CCcHHHHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCC
Confidence            3344677854 445555555577888899999999888887   566778888888888765322221    111    2


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          331 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       331 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      +- .=..-+..|.++|||+|=+|- |.+.       +|++.+|++-.+.+.
T Consensus       145 ~e-ei~~a~~ia~~aGADfVKTST-Gf~~-------~~gAt~edv~lm~~~  186 (231)
T 3ndo_A          145 EP-LLADVCRVARDAGADFVKTST-GFHP-------SGGASVQAVEIMART  186 (231)
T ss_dssp             HH-HHHHHHHHHHHTTCSEEECCC-SCCT-------TCSCCHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHCcCEEEcCC-CCCC-------CCCCCHHHHHHHHHH
Confidence            21 222345667899999998774 3331       466888998877764

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=92.31  E-value=0.73  Score=43.97  Aligned_cols=145  Identities=18%  Similarity=0.181  Sum_probs=91.8

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEec-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      +-++.+++ .+--..+.+.++|++.|.+.- +++-.+-... ...|.++.+..++.+.+.++   ..|.+.+      |.
T Consensus        19 ~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~---~pviaD~------~~   89 (255)
T 2qiw_A           19 GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVS---IPVSVDV------ES   89 (255)
T ss_dssp             CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCS---SCEEEEC------TT
T ss_pred             CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCC---CCEEecc------CC
Confidence            33444443 344445566778999988862 3332111111 13588999998887766653   5665433      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-----CCCCHHHHHHHHHHHHHhcC--CceEEEEeCCCc-----------
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP--VEKLAVHLHDTY-----------  332 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-----G~~~P~~v~~li~~l~~~~p--~~~i~~H~HNd~-----------  332 (426)
                      .+..++   .+.++++.++|+..|.|-|..     .+..++++.+.|+++++...  ++++-+-.|.|.           
T Consensus        90 Gyg~~~---~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~  166 (255)
T 2qiw_A           90 GYGLSP---ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDP  166 (255)
T ss_dssp             CTTCCH---HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSH
T ss_pred             CcCcHH---HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHH
Confidence            333345   677888889999999999986     23455778888888887621  123444455442           


Q ss_pred             -CcHHHHHHHHHHcCCCEE
Q 014369          333 -GQSLPNILISLQMGISTV  350 (426)
Q Consensus       333 -GlA~ANaLaAl~aGa~~V  350 (426)
                       --++.-+.+-.+|||+.|
T Consensus       167 ~~~ai~ra~a~~eAGAd~i  185 (255)
T 2qiw_A          167 MVEAIKRIKLMEQAGARSV  185 (255)
T ss_dssp             HHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHHcCCcEE
Confidence             346667778889999966

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=92.31  E-value=4.9  Score=42.53  Aligned_cols=224  Identities=13%  Similarity=0.134  Sum_probs=122.1

Q ss_pred             CCHHHHHH----HHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEE-Ee-C----Ch-----hh-H
Q 014369          145 VPTGVKVE----LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPV-LT-P----NL-----KG-F  207 (426)
Q Consensus       145 f~~~~ki~----I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~-~----~~-----~d-i  207 (426)
                      .+.++-.+    .++.|.+.|+|.+=+=.+      |.+.+.+..+..++.. ++..+.+ ++ .    ..     ++ +
T Consensus       119 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------~~~~Ea~aa~~a~~~~~~~~Pv~vS~t~~~~g~~~~G~~~~~~~  192 (566)
T 1q7z_A          119 TLFEEFYENFRETVEIMVEEGVDGIIFETF------SDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFA  192 (566)
T ss_dssp             BCHHHHHHHHHHHHHHHHHTTCSEEEEEEE------CCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCEEEEecc------CCHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCeeCCCCcHHHHH
Confidence            45565544    556788999998766432      1223344455555542 4444322 22 1    11     11 3


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCC---CC---CCCCHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCP---VE---GAIPPSKVA  280 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~p---d~---~r~~~~~l~  280 (426)
                      ..+...|++.|.+-++..+-           ..    ..+++..++ ....+.+|=-  -|.|   +.   ...+|+++.
T Consensus       193 ~~l~~~~~~avG~NC~~gp~-----------~~----~~~l~~l~~~~~~p~~vyPN--aG~p~~~~~~~~~~~~p~~~a  255 (566)
T 1q7z_A          193 ITFDELDIDALGINCSLGPE-----------EI----LPIFQELSQYTDKFLVVEPN--AGKPIVENGKTVYPLKPHDFA  255 (566)
T ss_dssp             HHHHTSSCSEEEEESSSCHH-----------HH----HHHHHHHHHTCCSEEEEECC--SSSCEEETTEEECCCCHHHHH
T ss_pred             HHhhccCCCEEEEeCCCCHH-----------HH----HHHHHHHHhcCCCEEEEEcC--CCCCcccCCccccCCCHHHHH
Confidence            33345688888776654442           22    233333333 2444433211  1333   11   124689999


Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC----ce--E----------------EEEe----------
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV----EK--L----------------AVHL----------  328 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~----~~--i----------------~~H~----------  328 (426)
                      +.++.+.+.|+..|.  --.| .+|+.++.+-+.++..-|.    .+  .                +--.          
T Consensus       256 ~~~~~~~~~G~~iiG--GCCG-TtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~~~~~~~~~~~iiGer~N~Tg~dsf~~  332 (566)
T 1q7z_A          256 VHIDSYYELGVNIFG--GCCG-TTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPSKLVTFDHFVVIGERINPAGRKKLWA  332 (566)
T ss_dssp             TTHHHHHHTTCSEEC--CCTT-CCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSSCEEESSSCEEEEEEECCTTCHHHHH
T ss_pred             HHHHHHHHcCCcEEc--cccC-CCHHHHHHHHHHhcCCCCCCcccCccceecCCceeeccccceEEEEEecCCCChhHHH
Confidence            999999999987653  2233 4999999998888653321    01  1                1111          


Q ss_pred             ---CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHH
Q 014369          329 ---HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFIN  401 (426)
Q Consensus       329 ---HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~  401 (426)
                         |+|+.-+++-+..-++.||++||... |...      ...-..++.++-.++. .++...||..+-.-+.+-++
T Consensus       333 ~~~~~~~~~a~~~A~~~v~~GAdiIDIgp-g~~~------v~~~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~  402 (566)
T 1q7z_A          333 EMQKGNEEIVIKEAKTQVEKGAEVLDVNF-GIES------QIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALR  402 (566)
T ss_dssp             HHHTTCCHHHHHHHHHHHHTTCSEEEEEC-SSGG------GSCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHH
T ss_pred             HhhcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHH
Confidence               33566778888889999999999983 2222      2333444455555544 35555566655444333333

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=92.20  E-value=1.5  Score=39.24  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChH
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEA  227 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~  227 (426)
                      +-.+.++.+.+.|++.|++..+....     .+..+..+.++.+ ....+..++.  ..++.+.++|++.|++....-  
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~~~-----~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~~gad~v~l~~~~~--   97 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNAPT-----REMYEIGKTLRQLTREYDALFFVD--DRVDVALAVDADGVQLGPEDM--   97 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCH-----HHHHHHHHHHHHHHHHTTCEEEEE--SCHHHHHHHTCSEEEECTTSC--
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCCCH-----HHHHHHHHHHHHHHHHcCCeEEEc--ChHHHHHHcCCCEEEECCccC--
Confidence            34678889999999999998642110     0112222233321 1122223332  567889999999998742211  


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---cCCCCC--
Q 014369          228 FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---GDTIGV--  302 (426)
Q Consensus       228 ~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l---~DT~G~--  302 (426)
                              +    .+.++    ..+ .++.+.  ++.         .+++.+    +.+.+.|+|.|.+   -+|.+.  
T Consensus        98 --------~----~~~~~----~~~-~~~~~~--v~~---------~t~~e~----~~~~~~g~d~i~~~~~~~~~~~~~  145 (215)
T 1xi3_A           98 --------P----IEVAK----EIA-PNLIIG--ASV---------YSLEEA----LEAEKKGADYLGAGSVFPTKTKED  145 (215)
T ss_dssp             --------C----HHHHH----HHC-TTSEEE--EEE---------SSHHHH----HHHHHHTCSEEEEECSSCC----C
T ss_pred             --------C----HHHHH----HhC-CCCEEE--Eec---------CCHHHH----HHHHhcCCCEEEEcCCccCCCCCC
Confidence                    1    11111    122 344333  211         234443    2355789998876   233211  


Q ss_pred             CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      ..|.. .+.++.+++..+ .++.+    .-|....|+-.++++|++.|++.
T Consensus       146 ~~~~~-~~~l~~l~~~~~-~pvia----~GGI~~~nv~~~~~~Ga~gv~vg  190 (215)
T 1xi3_A          146 ARVIG-LEGLRKIVESVK-IPVVA----IGGINKDNAREVLKTGVDGIAVI  190 (215)
T ss_dssp             CCCCH-HHHHHHHHHHCS-SCEEE----ESSCCTTTHHHHHTTTCSEEEES
T ss_pred             CCCcC-HHHHHHHHHhCC-CCEEE----ECCcCHHHHHHHHHcCCCEEEEh
Confidence            12222 344566665543 23443    34666678888889999988764

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=92.19  E-value=1.4  Score=43.97  Aligned_cols=120  Identities=12%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC---------------CCC-------------------CCCCH------
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE-------------------GAIPP------  276 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~---------------pd~-------------------~r~~~------  276 (426)
                      .++.++..+++++.++++|-++.+.|... |-               |-+                   ....|      
T Consensus        76 ~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~  154 (364)
T 1vyr_A           76 SPEQIAAWKKITAGVHAEDGRIAVQLWHT-GRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELD  154 (364)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGG
T ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHH
Confidence            45667778888889999999888888641 10               000                   00122      


Q ss_pred             ------HHHHHHHHHHHhCCCCEEEEc-------------------CCCCCCCH---HHHHHHHHHHHHhcCCceEEE--
Q 014369          277 ------SKVAYVAKELHDMGCFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVPVEKLAV--  326 (426)
Q Consensus       277 ------~~l~~~~~~l~~~Gad~I~l~-------------------DT~G~~~P---~~v~~li~~l~~~~p~~~i~~--  326 (426)
                            +.+.+.++.+.++|.|.|-|-                   |-.|....   ..+.++++++|+.++..+|++  
T Consensus       155 eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrl  234 (364)
T 1vyr_A          155 EIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRV  234 (364)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEE
Confidence                  567778888899999988882                   44444333   346777999999996327777  


Q ss_pred             ---EeCCC---cCcHHH----HHHHHHHcCCCEEeecccCC
Q 014369          327 ---HLHDT---YGQSLP----NILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       327 ---H~HNd---~GlA~A----NaLaAl~aGa~~VD~Sv~Gl  357 (426)
                         ..+++   -+....    -+.+.-++|+++|+.+..+.
T Consensus       235 s~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~  275 (364)
T 1vyr_A          235 SPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL  275 (364)
T ss_dssp             CCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred             ccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcc
Confidence               22332   122332    34455589999999986543

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=92.18  E-value=0.6  Score=47.95  Aligned_cols=200  Identities=13%  Similarity=0.037  Sum_probs=121.5

Q ss_pred             hhHHHHHHcCCCEEEEeccCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec--C----------
Q 014369          205 KGFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG--C----------  268 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd----~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg--~----------  268 (426)
                      +-++..+++|+..|+|-..+..    .|...+-=.+.+++++++..+...++..|....+ +..+-.  .          
T Consensus       171 ~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~I-iARTDa~~a~l~~s~~d~~  249 (439)
T 3i4e_A          171 ELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVL-VARTDAEAADLITSDIDDN  249 (439)
T ss_dssp             HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEE-EEEECTTTCCEESCCCCTT
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEEcCcccccccccccccc
Confidence            3467788999999999987642    1211122247899999998777777767765321 111110  0          


Q ss_pred             ----------CCC---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--
Q 014369          269 ----------PVE---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  333 (426)
Q Consensus       269 ----------pd~---~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--  333 (426)
                                +..   .+...+...+-+++..+ |||.|.+-  .|.-+++++..+.+.++..+|...+.+-+--.+.  
T Consensus       250 d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E--~~~~~~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~  326 (439)
T 3i4e_A          250 DKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCE--TGKPDLEYAKKFAEAIHKQFPGKLLSYNCSPSFNWK  326 (439)
T ss_dssp             TGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHH
T ss_pred             cchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEec--CCCCCHHHHHHHHHHhcccCCceEEeeCCCCCCcCc
Confidence                      000   01235666666666666 99999872  2457899999999999988896545543222222  


Q ss_pred             --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCC
Q 014369          334 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  407 (426)
Q Consensus       334 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~  407 (426)
                        +.   +++ .-.--++|+.++=.++.|+        ++-+.++.+++..+..-|...-++    +.-.++-.+..|..
T Consensus       327 ~~~~~~~~~~f~~eL~~lGv~~v~~~la~~--------raa~~A~~~~a~~i~~~Gm~ayve----~Q~~e~~~~~~g~~  394 (439)
T 3i4e_A          327 KNLDDATIAKFQKELGAMGYKFQFITLAGF--------HALNYSMFNLAHGYARTQMSAFVE----LQQAEFAAADKGFT  394 (439)
T ss_dssp             HHSCHHHHHTHHHHHHHHTCCEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHTTTTCC
T ss_pred             ccCCHHHHHHHHHHHHHcCCeEEEeChHHH--------HHHHHHHHHHHHHHHHhCCHHHHH----HHHHhhhhhhcCcc
Confidence              11   111 1233368999999998887        788899999998887644221111    12122223456666


Q ss_pred             CCCCCcccchhhh
Q 014369          408 SGSKTAIALNRIA  420 (426)
Q Consensus       408 ~~~~~pivG~~vf  420 (426)
                      .-.++--+|.+-|
T Consensus       395 ~~~hq~~~G~~y~  407 (439)
T 3i4e_A          395 AVKHQREVGTGYF  407 (439)
T ss_dssp             TTSHHHHTTHHHH
T ss_pred             eeecccccccchH
Confidence            6666666665544

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=92.08  E-value=2.7  Score=41.40  Aligned_cols=206  Identities=15%  Similarity=0.108  Sum_probs=120.2

Q ss_pred             HHHHHhCCCCeEEEecC-CC--CCcccc--ccCHHHHHHHhHhcC-CC-cEEEEe--C----C----hhhHHHHHHcCCC
Q 014369          154 IRRLVSSGLPVVEATSF-VS--PKWVPQ--LADARDVMEAVRDLE-GA-RLPVLT--P----N----LKGFEAAIAAGAK  216 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~s--~~~~p~--~~D~~~v~~~i~~~~-~~-~l~~l~--~----~----~~di~~a~~~Gv~  216 (426)
                      ++.++++|++.|=+|.. ++  ..+.|.  .-+.++++..++.+. .+ .+.+++  +    +    .+-+++..++|+.
T Consensus        52 A~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaa  131 (318)
T 1zlp_A           52 AAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAK  131 (318)
T ss_dssp             HHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCc
Confidence            56678899999999853 11  122232  235667776666442 12 233333  2    2    2345667789999


Q ss_pred             EEEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCCCC
Q 014369          217 EVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       217 ~V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~Gad  292 (426)
                      -|+|-....+.   |...+-=.+.++..++++.+++....-++.|.+--       |+. ....+...+-++++.++|||
T Consensus       132 gv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt-------da~a~~gl~~ai~Ra~Ay~eAGAd  204 (318)
T 1zlp_A          132 GVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVART-------DARAPHGLEEGIRRANLYKEAGAD  204 (318)
T ss_dssp             EEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEE-------CTHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEee-------HHhhhcCHHHHHHHHHHHHHcCCC
Confidence            99998765421   11100013567888888777766655556554211       110 01125667777888999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      .|.+.   |.-.++++.++.+.+    +. |+-+-.-. +|. ..-..-.--++|+++|-.....+        |+-+.+
T Consensus       205 ~i~~e---~~~~~e~~~~i~~~l----~~-P~lan~~~-~g~~~~~~~~eL~~lGv~~v~~~~~~~--------raa~~a  267 (318)
T 1zlp_A          205 ATFVE---APANVDELKEVSAKT----KG-LRIANMIE-GGKTPLHTPEEFKEMGFHLIAHSLTAV--------YATARA  267 (318)
T ss_dssp             EEEEC---CCCSHHHHHHHHHHS----CS-EEEEEECT-TSSSCCCCHHHHHHHTCCEEEECSHHH--------HHHHHH
T ss_pred             EEEEc---CCCCHHHHHHHHHhc----CC-CEEEEecc-CCCCCCCCHHHHHHcCCeEEEEchHHH--------HHHHHH
Confidence            99986   344556666655554    32 44332221 111 11113344577999997777765        577888


Q ss_pred             HHHHHHHHHhCC
Q 014369          372 TEDVVYMLSGLG  383 (426)
Q Consensus       372 lEevv~~L~~lG  383 (426)
                      +++++..|+..|
T Consensus       268 ~~~~~~~l~~~g  279 (318)
T 1zlp_A          268 LVNIMKILKEKG  279 (318)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            888888887644

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=92.03  E-value=2.5  Score=41.39  Aligned_cols=149  Identities=13%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             CCCcEEEEe-CChhhHHHHHHcCCCEEEEe-ccCChH-HHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          193 EGARLPVLT-PNLKGFEAAIAAGAKEVAIF-ASASEA-FSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       193 ~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~-~~~Sd~-~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      ++..+.++. .+--..+.+.++|++.|.+. .+++-. +-... ...|.++.+.++..+.+.+.  .+.|.+.+      
T Consensus        16 ~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~--~~PviaD~------   87 (302)
T 3fa4_A           16 PDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISP--STPVIADA------   87 (302)
T ss_dssp             TTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTST--TSCEEEEC------
T ss_pred             CCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhcc--CCCEEEEC------
Confidence            334454443 45555566777899988873 333221 11111 13578888887765544322  55665322      


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhc----CCceEEEEeC----
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVV----PVEKLAVHLH----  329 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~----p~~~i~~H~H----  329 (426)
                      |.. --+++.+.+.++.+.++|+..|.|-|.++           +...++....|++.++..    ++.-|-.-+-    
T Consensus        88 d~G-yg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~  166 (302)
T 3fa4_A           88 DTG-YGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQT  166 (302)
T ss_dssp             TTT-TSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            332 23688899999999999999999999985           234456666666666542    3332333322    


Q ss_pred             CCcCcHHHHHHHHHHcCCCEE
Q 014369          330 DTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       330 Nd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ..+--|+.-+.+-.+||||.|
T Consensus       167 ~gldeAi~Ra~ay~eAGAD~i  187 (302)
T 3fa4_A          167 HGYEESVARLRAARDAGADVG  187 (302)
T ss_dssp             HCHHHHHHHHHHHHTTTCSEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEE
Confidence            223337777788899999966

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=91.99  E-value=1.9  Score=42.11  Aligned_cols=153  Identities=15%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             HHHHHHHHhCCC-CeEEEecCCCCCccccccCHHHH---HHHhHhcCCCcEEE--Ee--CC-hhhHHHHHHcCCCEEEEe
Q 014369          151 VELIRRLVSSGL-PVVEATSFVSPKWVPQLADARDV---MEAVRDLEGARLPV--LT--PN-LKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       151 i~I~~~L~~~Gv-~~IEvG~~~s~~~~p~~~D~~~v---~~~i~~~~~~~l~~--l~--~~-~~di~~a~~~Gv~~V~i~  221 (426)
                      .+++....++|. ..|..++.          +.+++   .+.+++..+..+.+  +.  +. .+.++.+.+.|++.|.+.
T Consensus        26 ~~la~av~~aG~lG~i~~~~~----------~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~   95 (332)
T 2z6i_A           26 GDLAGAVSKAGGLGIIGGGNA----------PKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTG   95 (332)
T ss_dssp             HHHHHHHHHHTSBEEEECTTC----------CHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHhCCCcEEeCCCCC----------CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEEC
Confidence            456777888885 55554421          22333   33344333333333  33  23 245788899999999886


Q ss_pred             ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--C
Q 014369          222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD--T  299 (426)
Q Consensus       222 ~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D--T  299 (426)
                      ....                   .++++.+|+.|+++.+.+           .+++    .++.+.+.|+|.|.+-.  +
T Consensus        96 ~g~p-------------------~~~i~~l~~~g~~v~~~v-----------~~~~----~a~~~~~~GaD~i~v~g~~~  141 (332)
T 2z6i_A           96 AGNP-------------------SKYMERFHEAGIIVIPVV-----------PSVA----LAKRMEKIGADAVIAEGMEA  141 (332)
T ss_dssp             SSCG-------------------GGTHHHHHHTTCEEEEEE-----------SSHH----HHHHHHHTTCSCEEEECTTS
T ss_pred             CCCh-------------------HHHHHHHHHcCCeEEEEe-----------CCHH----HHHHHHHcCCCEEEEECCCC
Confidence            5421                   134455666787765322           1233    35667789999998832  2


Q ss_pred             CCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeec
Q 014369          300 IGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCS  353 (426)
Q Consensus       300 ~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~S  353 (426)
                      -|. ..+. ...+++.+++.+.. ++-.=    =|.. -.|+.+++.+||+.|...
T Consensus       142 GG~~g~~~-~~~ll~~i~~~~~i-PViaa----GGI~~~~~~~~al~~GAdgV~vG  191 (332)
T 2z6i_A          142 GGHIGKLT-TMTLVRQVATAISI-PVIAA----GGIADGEGAAAGFMLGAEAVQVG  191 (332)
T ss_dssp             SEECCSSC-HHHHHHHHHHHCSS-CEEEE----SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCCcc-HHHHHHHHHHhcCC-CEEEE----CCCCCHHHHHHHHHcCCCEEEec
Confidence            222 1122 23677888776642 34332    2444 467888889999988654

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=91.95  E-value=1.9  Score=43.14  Aligned_cols=132  Identities=19%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCCC-CCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV-EGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~pd-~~r~  274 (426)
                      ++|.++|.|.|.|-..-        |+.  ++...+|-|.++=.+.+.++++.+|+. |- .|.+-++..-.... ....
T Consensus       168 ~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  247 (361)
T 3gka_A          168 ENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSD  247 (361)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSC
T ss_pred             HHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCC
Confidence            45678999999987653        232  222345667776666667777776654 32 45554542100000 0112


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      +.+...++++.+.++|+|.|.+....  ..|    ++++.+++.++..-|..-.     .-...+..+++.| ||.|
T Consensus       248 ~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~iPvi~~Gg-----it~e~a~~~l~~G~aD~V  313 (361)
T 3gka_A          248 PAATFGHVARELGRRRIAFLFARESF--GGD----AIGQQLKAAFGGPFIVNEN-----FTLDSAQAALDAGQADAV  313 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC--STT----CCHHHHHHHHCSCEEEESS-----CCHHHHHHHHHTTSCSEE
T ss_pred             cHHHHHHHHHHHHHcCCCEEEECCCC--CCH----HHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHcCCccEE
Confidence            35678899999999999999886543  122    5677888877653233322     2357788889998 8866

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=91.94  E-value=3.7  Score=38.49  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC-------------------CCCCCH
Q 014369          246 AVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT-------------------IGVGTP  305 (426)
Q Consensus       246 ~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT-------------------~G~~~P  305 (426)
                      +..+.+|+.|-+ +..|+..       +..+.+...+.++.+.+.|+|.|-|...                   .+-+++
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~-------g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~   79 (262)
T 1rd5_A            7 DTMAALMAKGKTAFIPYITA-------GDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTM   79 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEET-------TSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHhcCCceEEEEeeC-------CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCH
Confidence            444445555544 3445542       2334688899999999999999888542                   233578


Q ss_pred             HHHHHHHHHHHHhcCCceEEEEeCCC----cCcHHHHHHHHHHcCCCEEeec
Q 014369          306 GTVVPMLEAVMAVVPVEKLAVHLHDT----YGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       306 ~~v~~li~~l~~~~p~~~i~~H~HNd----~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      ....++++.+++... .++.+=...+    +++.     .+.++||+.|...
T Consensus        80 ~~~~~~i~~ir~~~~-~Pv~~m~~~~~~~~~~~~-----~a~~aGadgv~v~  125 (262)
T 1rd5_A           80 DAVLEMLREVTPELS-CPVVLLSYYKPIMFRSLA-----KMKEAGVHGLIVP  125 (262)
T ss_dssp             HHHHHHHHHHGGGCS-SCEEEECCSHHHHSCCTH-----HHHHTTCCEEECT
T ss_pred             HHHHHHHHHHHhcCC-CCEEEEecCcHHHHHHHH-----HHHHcCCCEEEEc
Confidence            888999999998743 3443311111    1221     2889999988763

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*

Probab=91.92  E-value=2.3  Score=41.83  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=86.2

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak-~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++.+.+-|+..+-+++.  + +.....|.+.++.++.+.+.++.++ +.|+.++.-+++.      ...+++...+.++.
T Consensus        84 ~~~~~~dgV~y~Eir~~--P-~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~~~~  154 (326)
T 3pao_A           84 LQKCKAQNVVHVEPFFD--P-QTHTDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFL------RHLSEEQAQKTLDQ  154 (326)
T ss_dssp             HHHHHHTTEEEECCEEC--H-HHHHTTTCCHHHHHHHHHHHHHHHHHHHCCEECCEEEEE------TTSCHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEEEC--h-HHhccCCCCHHHHHHHHHHHHHHHHhhCceEEEEEEEeC------CCCCHHHHHHHHHH
Confidence            34555678776666543  3 2233457899999998888888775 4687766433321      23467777777766


Q ss_pred             HHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEE
Q 014369          286 LHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV  350 (426)
Q Consensus       286 l~~~--Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~V  350 (426)
                      +.++  ++..|-|+-.-....|..+.+.++..++.  +.++.+|+..+.+  ..+...|++ .|+++|
T Consensus       155 a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~ri  218 (326)
T 3pao_A          155 ALPFRDAFIAVGLDSSEVGHPPSKFQRVFDRARSE--GFLTVAHAGEEGP--PEYIWEALDLLKVERI  218 (326)
T ss_dssp             HGGGGGGCSEEEEESCCTTCCGGGGHHHHHHHHHT--TCEECEEESSSSC--HHHHHHHHHTTCCSSE
T ss_pred             HhhccccceeeCCCCCCCCCCHHHHHHHHHHHHHc--CCceeeecCCCCC--HHHHHHHHhcCCCcee
Confidence            6554  45566664333345788888888776653  3578899988754  467788995 899876

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=91.90  E-value=4.5  Score=39.24  Aligned_cols=146  Identities=15%  Similarity=0.059  Sum_probs=92.8

Q ss_pred             CcEEEEe-CChhhHHHHHHcCCCEEEEec-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC
Q 014369          195 ARLPVLT-PNLKGFEAAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       195 ~~l~~l~-~~~~di~~a~~~Gv~~V~i~~-~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~  271 (426)
                      -.+.+++ .+--..+.+.++|++.|.+.- +++-.+-... .-.|.++.+..++.+.+.+   ..+|.+.      .|..
T Consensus        15 ~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD------~d~G   85 (290)
T 2hjp_A           15 RLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIAD------IDTG   85 (290)
T ss_dssp             CCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTC---SSCEEEE------CTTT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEE------CCCC
Confidence            3455554 354555666778999988862 3332211111 1347888888877665443   3555422      2333


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC------------CCCH-HHHHHHHHHHHHhc--CCceEEEEeCCC-----
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG------------VGTP-GTVVPMLEAVMAVV--PVEKLAVHLHDT-----  331 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G------------~~~P-~~v~~li~~l~~~~--p~~~i~~H~HNd-----  331 (426)
                      +- +++.+.+.++++.++|+..|.|-|..+            .+.| +++.+.|+++++..  ++..|-.-.-..     
T Consensus        86 yg-~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g  164 (290)
T 2hjp_A           86 FG-NAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG  164 (290)
T ss_dssp             TS-SHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCC
T ss_pred             CC-CHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhcccc
Confidence            23 789999999999999999999999973            1444 46677788877763  443444444332     


Q ss_pred             cCcHHHHHHHHHHcCCCEE
Q 014369          332 YGQSLPNILISLQMGISTV  350 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~V  350 (426)
                      +--++.-+.+-.+|||+.|
T Consensus       165 ~~~ai~Ra~ay~eAGAd~i  183 (290)
T 2hjp_A          165 QQEAVRRGQAYEEAGADAI  183 (290)
T ss_dssp             HHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHcCCcEE
Confidence            2346677788889999965

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=91.89  E-value=0.79  Score=44.63  Aligned_cols=99  Identities=19%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|=   ++.++-.++++.+.+... ..++-+|. +|+..-++..+..|-++|
T Consensus        31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  110 (304)
T 3l21_A           31 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  110 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   578888899999888763 45777776 788999999999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      |+.|=..-      ||-..    ++-|+++..++
T Consensus       111 adavlv~~------P~y~~----~s~~~l~~~f~  134 (304)
T 3l21_A          111 AHGLLVVT------PYYSK----PPQRGLQAHFT  134 (304)
T ss_dssp             CSEEEEEC------CCSSC----CCHHHHHHHHH
T ss_pred             CCEEEECC------CCCCC----CCHHHHHHHHH
Confidence            99775543      32211    24566666665

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=91.87  E-value=5.6  Score=39.62  Aligned_cols=180  Identities=16%  Similarity=0.122  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.+..+++++.+.++|.+.+=.+.|-   ++.....+ . ++-++.+++.   .++.+..=......++.+.+. ++.+.
T Consensus       118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~gl-g-~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~-vd~lk  194 (350)
T 1vr6_A          118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL-G-EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-ADIIQ  194 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC-T-HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-CSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCC-C-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCEEE
Confidence            78999999999999999998777653   22111112 1 2233333322   344444333467888888888 99999


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      |....-.          -   .    .+++++-+.|.+|-  ++       .+. .+++.+...++.+...|...|.|+.
T Consensus       195 IgAr~~~----------n---~----~LL~~va~~~kPVi--lk-------~G~~~tl~ei~~Ave~i~~~GN~~viLce  248 (350)
T 1vr6_A          195 IGARNAQ----------N---F----RLLSKAGSYNKPVL--LK-------RGFMNTIEEFLLSAEYIANSGNTKIILCE  248 (350)
T ss_dssp             ECGGGTT----------C---H----HHHHHHHTTCSCEE--EE-------CCTTCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ECccccc----------C---H----HHHHHHHccCCcEE--Ec-------CCCCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence            8743211          1   1    23344446788876  33       133 3789999999999999988788874


Q ss_pred             CCC--C--CCHHHHHH-HHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeeccc
Q 014369          299 TIG--V--GTPGTVVP-MLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCSVA  355 (426)
Q Consensus       299 T~G--~--~~P~~v~~-li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~  355 (426)
                      --+  +  -+++.+.- .+..+++.+.. +|.+   |.=.+.-+...-+++|+.+||+  .|+.=+.
T Consensus       249 RG~~typ~~~~~~vdl~ai~~lk~~~~l-pVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~  314 (350)
T 1vr6_A          249 RGIRTFEKATRNTLDISAVPIIRKESHL-PILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPE  314 (350)
T ss_dssp             CCBCCSCCSSSSBCCTTHHHHHHHHBSS-CEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSC
T ss_pred             CCCCCCCCcChhhhhHHHHHHHHHhhCC-CEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence            211  1  12333222 24667776542 4655   5534444457888999999999  8876543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=91.81  E-value=1.5  Score=45.45  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEE-eCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVL-TPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-.+.++.|.++|++.|++..-. +.    .....+.++.++ ..++..+.+- +.+.++.+.+.++|+|.|.+.....
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~-g~----~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~G  302 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAH-GH----SKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPG  302 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSC-CS----BHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCS
T ss_pred             cchHHHHHHHhhcccceEEecccC-Cc----chhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCC
Confidence            344778899999999999997532 10    011234455555 3456555443 4678889999999999999842211


Q ss_pred             h---HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          226 E---AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       226 d---~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      .   ......++..   .++.+.++++.+++.+++|.+         +.+-.+++.+.++.    ++||+.+.+.=.
T Consensus       303 s~~~t~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~di~kal----~~GAd~V~vGs~  363 (490)
T 4avf_A          303 SICTTRIVAGVGVP---QISAIANVAAALEGTGVPLIA---------DGGIRFSGDLAKAM----VAGAYCVMMGSM  363 (490)
T ss_dssp             TTCHHHHHTCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHHHHHHHH----HHTCSEEEECTT
T ss_pred             cCCCccccCCCCcc---HHHHHHHHHHHhccCCCcEEE---------eCCCCCHHHHHHHH----HcCCCeeeecHH
Confidence            1   1111122222   345556777777777888752         23445666655543    479998887643

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=91.74  E-value=2.5  Score=42.20  Aligned_cols=132  Identities=18%  Similarity=0.086  Sum_probs=82.5

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCCCC-CCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPVE-GAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~pd~-~r~  274 (426)
                      ++|.++|.|.|.|-..-        |+.  .+...+|-|.++=.+.+.++++.+|+. |- .|.+-++..-..... ...
T Consensus       160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  239 (362)
T 4ab4_A          160 ENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD  239 (362)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTT
T ss_pred             HHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCC
Confidence            45678999999987653        232  222345777777677777777777764 32 455555421000000 112


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      +.+...++++.+.++|+|.|.+....  ..|    ++++.+++.++..-|..-.     .....+..+++.| ||.|
T Consensus       240 ~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~iPvi~~Gg-----it~e~a~~~l~~g~aD~V  305 (362)
T 4ab4_A          240 RAETFTYVARELGKRGIAFICSRERE--ADD----SIGPLIKEAFGGPYIVNER-----FDKASANAALASGKADAV  305 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC--CTT----CCHHHHHHHHCSCEEEESS-----CCHHHHHHHHHTTSCSEE
T ss_pred             cHHHHHHHHHHHHHhCCCEEEECCCC--CCH----HHHHHHHHHCCCCEEEeCC-----CCHHHHHHHHHcCCccEE
Confidence            35678899999999999999886543  112    4677888877653233322     2357788889998 8866

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=91.73  E-value=0.82  Score=44.61  Aligned_cols=110  Identities=18%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCH------HHHHHHHHHHHHhcCCc--e--EEEEeCCC
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP------GTVVPMLEAVMAVVPVE--K--LAVHLHDT  331 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P------~~v~~li~~l~~~~p~~--~--i~~H~HNd  331 (426)
                      |+.+.|+|... .+.+.-..-++.+.+.||++|-+.=-.|.+.-      ..+.+-|+.+++..+..  +  |+.-.=++
T Consensus        86 V~tVigFP~G~-~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~  164 (297)
T 4eiv_A           86 VCAAVNFPEGT-GTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQG  164 (297)
T ss_dssp             EEEEESTTTCC-CCHHHHHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCC
T ss_pred             EEEEecCCCCC-CCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            44556888654 45554444567778889999998888887655      45666777777765432  2  22222333


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          332 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      .-.=...+..|+++|||.|=+|-+ .+        +|++.+|++..+++.
T Consensus       165 ~e~i~~A~~ia~~AGADFVKTSTG-f~--------~~gAT~edV~lM~~~  205 (297)
T 4eiv_A          165 GDIISRAAVAALEGGADFLQTSSG-LG--------ATHATMFTVHLISIA  205 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHH
Confidence            332235677889999999988853 43        467889988887753

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=91.67  E-value=1.3  Score=46.39  Aligned_cols=139  Identities=15%  Similarity=-0.001  Sum_probs=85.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-C--CcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G--~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ++.+.+-|+..+-+....++.+....-+.+.++.++.+.+.++.+++. |  +.++.-++.     + -..+++...+.+
T Consensus       206 l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~rlI~~~-----~-R~~~~e~a~e~l  279 (508)
T 3lgd_A          206 MQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSD-----H-RSKDVAVIAESI  279 (508)
T ss_dssp             HHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEE-----E-TTSCHHHHHHHH
T ss_pred             HHHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEEEe-----c-CCCCHHHHHHHH
Confidence            345566788776665333333222233578999999999999888754 4  555542332     1 234667666666


Q ss_pred             HHHHhC------CCCEEEEcCCCCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH---HHHHHHHHHcCCCEEe
Q 014369          284 KELHDM------GCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS---LPNILISLQMGISTVD  351 (426)
Q Consensus       284 ~~l~~~------Gad~I~l~DT~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA---~ANaLaAl~aGa~~VD  351 (426)
                      +.+.++      ++-.|-|+..-... .|..+.+.+...++.-.+.++.+|+-...+.+   ..|...|+..|+++|+
T Consensus       280 ~~a~~~~~~~~~~VvG~DLaG~E~~g~p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~~~~~~i~~Al~Lga~RIg  357 (508)
T 3lgd_A          280 RMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIG  357 (508)
T ss_dssp             HHHHHHHHHCTTTEEEEEEESCTTTSCCTGGGHHHHTHHHHTTCCCCBCCEECCSSCCSSTTTTHHHHHHHTTCSSEE
T ss_pred             HHHHHHHhhCCCceEEeccCCCCCCCCCHHHHHHHHHHHHHHHcCCceeeecccccCCCCCcHHHHHHHHhcCCceee
Confidence            555443      35566664332222 35667777665433334567999998876554   4688889999999884

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.66  E-value=4  Score=39.99  Aligned_cols=150  Identities=13%  Similarity=0.066  Sum_probs=89.8

Q ss_pred             CCCcEEEEe-CChhhHHHHHHcCCCEEEEe-ccCChHH-Hhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          193 EGARLPVLT-PNLKGFEAAIAAGAKEVAIF-ASASEAF-SKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       193 ~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~-~~~Sd~~-~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      ++..+.++. .+--..+.+.++|++.|.+. .+++-.. -... .-.|.++.+..++.+.+.+ ...+.|.+.+      
T Consensus        23 ~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~-~~~~PviaD~------   95 (307)
T 3lye_A           23 TDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLD-PFGPPLIADM------   95 (307)
T ss_dssp             CCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSS-TTSCCEEEEC------
T ss_pred             CCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccC-CCCCcEEEEC------
Confidence            344555544 45555566778999988883 3332211 1111 1347788887766554321 1235665332      


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhc----CCceEEEEeCC---
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVV----PVEKLAVHLHD---  330 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G-----------~~~P~~v~~li~~l~~~~----p~~~i~~H~HN---  330 (426)
                      |.. --+++.+.+.++.+.++|+..|.|-|.++           +...++....|++.++..    ++.-|-.-+-.   
T Consensus        96 d~G-yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~  174 (307)
T 3lye_A           96 DTG-YGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQS  174 (307)
T ss_dssp             TTC-SSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence            332 23688899999999999999999999986           334455556666665442    33223333221   


Q ss_pred             -CcCcHHHHHHHHHHcCCCEE
Q 014369          331 -TYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       331 -d~GlA~ANaLaAl~aGa~~V  350 (426)
                       .+--++.-+.+-.++|||.|
T Consensus       175 ~gldeAi~Ra~ay~eAGAD~i  195 (307)
T 3lye_A          175 LGYEECIERLRAARDEGADVG  195 (307)
T ss_dssp             HCHHHHHHHHHHHHHTTCSEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEE
Confidence             22347777888899999966

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=91.61  E-value=1.6  Score=45.47  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEecc-CC
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS-AS  225 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~-~S  225 (426)
                      +-.+.++.|.++|++.|++..-. +.    .....+.++.++ ..|+..+.+ -+.+.++.+.+.++|+|.|.+... .+
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~-g~----~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs  305 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSH-GH----SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGS  305 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCT
T ss_pred             chHHHHHHHHhccCceEEecccc-cc----chHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCc
Confidence            34678899999999999998532 11    111234444454 345665544 346778899999999999987521 11


Q ss_pred             hH--HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          226 EA--FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       226 d~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      ..  ......+..   .+..+.++++.+++.+++|.+         +.+-.+++.+.++    .++||+.+.+.=.
T Consensus       306 ~~~tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIa---------~GGI~~~~di~ka----la~GAd~V~iGs~  365 (496)
T 4fxs_A          306 ICTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGDISKA----IAAGASCVMVGSM  365 (496)
T ss_dssp             TBCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHHHHH----HHTTCSEEEESTT
T ss_pred             CcccccccCCCcc---HHHHHHHHHHHhccCCCeEEE---------eCCCCCHHHHHHH----HHcCCCeEEecHH
Confidence            10  111112222   345566777788888888752         3344566665554    3579998887633

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}

Probab=91.49  E-value=12  Score=37.37  Aligned_cols=154  Identities=12%  Similarity=0.073  Sum_probs=98.7

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +.+.+-|+..+-+.+.  +.+....-|.+.++.++.+.+.++.+ ++.|+.++.-++..      -..+++...++++.+
T Consensus       103 ed~a~dgV~Y~Eirf~--P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~------R~~~~e~a~~~~~~a  174 (380)
T 4gxw_A          103 EDAAAHNVRHAEFFWN--PTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSID------REQDPDEAVAIVDWM  174 (380)
T ss_dssp             HHHHTTTEEEEEEEEC--HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE------TTSCHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEEEcC--HHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeec------CCCCHHHHHHHHHHH
Confidence            4455567776666643  43333335789999999988888776 45788887544421      234678888877777


Q ss_pred             HhC---CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCEEeecccCCCCCCC
Q 014369          287 HDM---GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       287 ~~~---Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~VD~Sv~GlGecP~  362 (426)
                      .+.   |+-.|-|+-.--...|..+.+.++..++.  +.++.+|+=.. |....|...|++ .|+++|+=.+.=+     
T Consensus       175 ~~~~~~~VvG~dL~g~E~~~p~~~f~~~f~~ar~~--Gl~~t~HAGE~-~~p~~~i~~al~~lga~RIgHG~~~~-----  246 (380)
T 4gxw_A          175 KANRADEVAGIGIDYRENDRPPELFWKAYRDARAA--GFRTTAHAGEF-GMPWRNVETAVDLLHVDRVDHGYTIV-----  246 (380)
T ss_dssp             HHTCCTTBCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESCT-TCCHHHHHHHHHTSCCSEEEECGGGG-----
T ss_pred             HHhCCCCEEEEeecCCCCCCCHHHHHHHHHHHHHc--CCCeeeecccc-CCchHHHHHHHHHcCCcccccceeec-----
Confidence            665   45556665433345677888888887764  35799999764 333457888886 7999996443321     


Q ss_pred             CCCCCCcccHHHHHHHHHhCCCC
Q 014369          363 AKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       363 a~graGNa~lEevv~~L~~lG~~  385 (426)
                              .-++++..++..++.
T Consensus       247 --------~d~~L~~~l~~~~I~  261 (380)
T 4gxw_A          247 --------DNPELCARYAERGIV  261 (380)
T ss_dssp             --------GCHHHHHHHHHHTCE
T ss_pred             --------cChHHHHHHHHhCce
Confidence                    124566666654443

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=91.43  E-value=4.4  Score=37.93  Aligned_cols=111  Identities=15%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcCC--ce--EEEEeCCCcC
Q 014369          261 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYG  333 (426)
Q Consensus       261 ~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p~--~~--i~~H~HNd~G  333 (426)
                      .++.+.|.|... .+.+.-..-++. .+.|||.|-+.=-+|   ...-..+.+-|+.+++..+.  ++  |+...=++ -
T Consensus        52 ~v~tvigFP~G~-~~~~~k~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~-e  128 (226)
T 1vcv_A           52 KLCVVADFPFGA-LPTASRIALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRD-E  128 (226)
T ss_dssp             EEEEEESTTTCC-SCHHHHHHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH-H
T ss_pred             eEEEEeCCCCCC-CchHHHHHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCH-H
Confidence            355667788654 445544444666 889999999888888   45567788888888887643  22  21111111 1


Q ss_pred             cHHHHHHHHHHcCCCEEeecc--c------CCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          334 QSLPNILISLQMGISTVDCSV--A------GLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       334 lA~ANaLaAl~aGa~~VD~Sv--~------GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      .=.-.+..|+++|||+|=+|-  .      ++|.       +|++.+|++-.+.+.
T Consensus       129 ei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~-------~~gAt~~dv~lm~~~  177 (226)
T 1vcv_A          129 ERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGN-------PVHSTPERAAAIARY  177 (226)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTC-------CSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCccccccccCC-------CCCCCHHHHHHHHHH
Confidence            122345667899999998884  2      2232       578889998777654

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=91.31  E-value=2.7  Score=41.04  Aligned_cols=208  Identities=14%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             HHHHHhCCCCeEEEecC-C--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----C----hhhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----N----LKGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~----~~di~~a~~~Gv~~  217 (426)
                      ++.++++|++.|=+|.. +  ...+.|.  .-+.++++..++.+. .+.+.+++  +    +    .+.++...++|+.-
T Consensus        35 A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaag  114 (298)
T 3eoo_A           35 AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKAGVGA  114 (298)
T ss_dssp             HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHhCCeE
Confidence            45567889999999852 1  1222342  234567776666442 12233333  2    2    23456677899999


Q ss_pred             EEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCCCCE
Q 014369          218 VAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       218 V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |+|-..+.+.   |...+-=.+.+++.++++.+++.++.-++.+.+- +      |+. ....+...+-+++..++|||.
T Consensus       115 v~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~AR-T------Da~~~~gldeai~Ra~ay~~AGAD~  187 (298)
T 3eoo_A          115 VHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMAR-T------DAAAAEGIDAAIERAIAYVEAGADM  187 (298)
T ss_dssp             EEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEE-E------CTHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             EEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEe-e------hhhhhcCHHHHHHHHHhhHhcCCCE
Confidence            9999876531   1111111368889998876665544334433321 1      110 112345555667778899999


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHH
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATE  373 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lE  373 (426)
                      |.+.   |.-+++++.++.+.+.  .|.. +-+-..+...+  -+.-.--++|+++|-.....+        |+-+.+++
T Consensus       188 if~~---~~~~~ee~~~~~~~~~--~Pl~-~n~~~~g~tp~--~~~~eL~~lGv~~v~~~~~~~--------raa~~a~~  251 (298)
T 3eoo_A          188 IFPE---AMKTLDDYRRFKEAVK--VPIL-ANLTEFGSTPL--FTLDELKGANVDIALYCCGAY--------RAMNKAAL  251 (298)
T ss_dssp             EEEC---CCCSHHHHHHHHHHHC--SCBE-EECCTTSSSCC--CCHHHHHHTTCCEEEECSHHH--------HHHHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHHHcC--CCeE-EEeccCCCCCC--CCHHHHHHcCCeEEEEchHHH--------HHHHHHHH
Confidence            9886   3457888888888774  4531 12211111111  123444577999997776665        67788889


Q ss_pred             HHHHHHHhCCC
Q 014369          374 DVVYMLSGLGV  384 (426)
Q Consensus       374 evv~~L~~lG~  384 (426)
                      +++..|+.-|-
T Consensus       252 ~~~~~i~~~g~  262 (298)
T 3eoo_A          252 NFYETVRRDGT  262 (298)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHcCC
Confidence            98888876443

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=91.27  E-value=2.6  Score=42.26  Aligned_cols=119  Identities=10%  Similarity=0.089  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC---------------CCC---------------CCCCH---------
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE---------------GAIPP---------  276 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~---------------pd~---------------~r~~~---------  276 (426)
                      ..++.++..+++++.++++|-++.+.|... |-               |-+               ....|         
T Consensus        85 ~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~  163 (376)
T 1icp_A           85 WTKEQVEAWKPIVDAVHAKGGIFFCQIWHV-GRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIP  163 (376)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHH
Confidence            345677888888999999999888888752 10               000               00122         


Q ss_pred             ---HHHHHHHHHHHhCCCCEEEEc-------------------CCCCCCC---HHHHHHHHHHHHHhcCCceEEEEeCCC
Q 014369          277 ---SKVAYVAKELHDMGCFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDT  331 (426)
Q Consensus       277 ---~~l~~~~~~l~~~Gad~I~l~-------------------DT~G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd  331 (426)
                         +.+.+.++.+.++|.|.|-|-                   |-.|...   +..+.++|+++|+.++..+|.+-++-+
T Consensus       164 ~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~  243 (376)
T 1icp_A          164 QIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPF  243 (376)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence               567778888999999988773                   4444433   334788899999998732788777632


Q ss_pred             -------cCc----HHHHHHHHHHcCCCEEeeccc
Q 014369          332 -------YGQ----SLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       332 -------~Gl----A~ANaLaAl~aGa~~VD~Sv~  355 (426)
                             -+.    ++.-+-..-++|+++|+.+..
T Consensus       244 ~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  278 (376)
T 1icp_A          244 AHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEP  278 (376)
T ss_dssp             CCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECC
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence                   123    233333444789999999754

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=91.27  E-value=2.3  Score=42.03  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEEeeecC----------CCC------C----CCC-------HHHHHHHHHHHHhCC
Q 014369          238 EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC----------PVE------G----AIP-------PSKVAYVAKELHDMG  290 (426)
Q Consensus       238 ~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~----------pd~------~----r~~-------~~~l~~~~~~l~~~G  290 (426)
                      ++.++..+++++.++++|-++.+.|... |-          |-+      .    ..+       .+.+.+.++.+.++|
T Consensus        79 d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aG  157 (340)
T 3gr7_A           79 DDHIAGLRELVGLVKEHGAAIGIQLAHA-GRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAG  157 (340)
T ss_dssp             TTHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccC-CCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            3557778889999999999888888753 10          000      0    012       235556677788899


Q ss_pred             CCEEEEc-------------------CCCCCCCH---HHHHHHHHHHHHhcCCceEEEEeCC--------CcCcHHHHHH
Q 014369          291 CFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHD--------TYGQSLPNIL  340 (426)
Q Consensus       291 ad~I~l~-------------------DT~G~~~P---~~v~~li~~l~~~~p~~~i~~H~HN--------d~GlA~ANaL  340 (426)
                      .|.|-|-                   |-.|...-   .-+.++++++++.+ +.+|.+-..-        +....+.-+.
T Consensus       158 fDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~~~~~~~~la~  236 (340)
T 3gr7_A          158 FDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGLTAKDYVPYAK  236 (340)
T ss_dssp             CSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSCCGGGHHHHHH
T ss_pred             CCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCCCHHHHHHHHH
Confidence            9977763                   44454322   33678899999988 4467665552        2334445555


Q ss_pred             HHHHcCCCEEeecccCCC
Q 014369          341 ISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~GlG  358 (426)
                      ...++|+++|+.+-.+..
T Consensus       237 ~L~~~Gvd~i~vs~g~~~  254 (340)
T 3gr7_A          237 RMKEQGVDLVDVSSGAIV  254 (340)
T ss_dssp             HHHHTTCCEEEEECCCSS
T ss_pred             HHHHcCCCEEEEecCCcc
Confidence            556889999999875543

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.26  E-value=9.1  Score=36.55  Aligned_cols=150  Identities=13%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHh------hh-----cCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCC
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSK------SN-----INCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~------~~-----~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~  271 (426)
                      +.++...+.|+|.|.+-+|.||...-      ..     .|.+.++.    -++++..|+.  .+++.  ++.-      
T Consensus        36 ~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~----~~~v~~ir~~~~~~Piv--lm~Y------  103 (267)
T 3vnd_A           36 KIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDC----FDIITKVRAQHPDMPIG--LLLY------  103 (267)
T ss_dssp             HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHH----HHHHHHHHHHCTTCCEE--EEEC------
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHH----HHHHHHHHhcCCCCCEE--EEec------
Confidence            34666778999999999988884321      11     24444433    3555566654  34433  4321      


Q ss_pred             CCCCHHH---HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          272 GAIPPSK---VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       272 ~r~~~~~---l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                        ++|-+   +.++++.+.++|+|.+.++|-    .|++..++++.++++--  .+.+=+=.+.-..  -.....+.+-.
T Consensus       104 --~npv~~~g~e~f~~~~~~aGvdgvii~Dl----p~ee~~~~~~~~~~~gl--~~i~liaP~t~~e--ri~~i~~~~~g  173 (267)
T 3vnd_A          104 --ANLVFANGIDEFYTKAQAAGVDSVLIADV----PVEESAPFSKAAKAHGI--APIFIAPPNADAD--TLKMVSEQGEG  173 (267)
T ss_dssp             --HHHHHHHCHHHHHHHHHHHTCCEEEETTS----CGGGCHHHHHHHHHTTC--EEECEECTTCCHH--HHHHHHHHCCS
T ss_pred             --CcHHHHhhHHHHHHHHHHcCCCEEEeCCC----CHhhHHHHHHHHHHcCC--eEEEEECCCCCHH--HHHHHHHhCCC
Confidence              12311   256788889999999999985    57888888888876421  1222122222222  23333334444


Q ss_pred             EEee-cccC-CCCCCCCCCCCCc-ccHHHHHHHHHhC
Q 014369          349 TVDC-SVAG-LGGCPYAKGASGN-VATEDVVYMLSGL  382 (426)
Q Consensus       349 ~VD~-Sv~G-lGecP~a~graGN-a~lEevv~~L~~l  382 (426)
                      .|-. |+.| -|.      +.+. ..+.+++..+++.
T Consensus       174 fvY~vS~~GvTG~------~~~~~~~~~~~v~~vr~~  204 (267)
T 3vnd_A          174 YTYLLSRAGVTGT------ESKAGEPIENILTQLAEF  204 (267)
T ss_dssp             CEEESCCCCCC--------------CHHHHHHHHHTT
T ss_pred             cEEEEecCCCCCC------ccCCcHHHHHHHHHHHHh
Confidence            4554 6666 344      4443 3477888888763

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=91.25  E-value=4  Score=39.60  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHHHhCC----CCeEEEecCC-----CCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHc
Q 014369          146 PTGVKVELIRRLVSSG----LPVVEATSFV-----SPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAA  213 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~G----v~~IEvG~~~-----s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~  213 (426)
                      +.++.+++|+.|.++|    +..|=-++|-     ++.....+ ..++=++.+++.   .++.+..=.-....++.+.+.
T Consensus        32 ~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~-g~~~GL~~L~~~~~e~Glp~~Tev~d~~~v~~l~~~  110 (285)
T 3sz8_A           32 SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGV-GLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEI  110 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCS-CHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCc-CHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHh
Confidence            7888899999998764    6544434332     12111111 112333334322   344444333467788888777


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCC
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad  292 (426)
                       ++.+.|...  +        +..   .    ++++++-..|.+|-  +..       +. .+++++...++.+.+.|.+
T Consensus       111 -vd~lqIgA~--~--------~~n---~----~LLr~va~~gkPVi--lK~-------G~~~t~~ei~~ave~i~~~Gn~  163 (285)
T 3sz8_A          111 -ADVLQVPAF--L--------ARQ---T----DLVVAIAKAGKPVN--VKK-------PQFMSPTQLKHVVSKCGEVGND  163 (285)
T ss_dssp             -CSEEEECGG--G--------TTC---H----HHHHHHHHTSSCEE--EEC-------CTTSCGGGTHHHHHHHHHTTCC
T ss_pred             -CCEEEECcc--c--------cCC---H----HHHHHHHccCCcEE--EeC-------CCCCCHHHHHHHHHHHHHcCCC
Confidence             999888632  1        111   1    24445556788876  331       22 4677888889999999998


Q ss_pred             EEEEcCCCCCCCHHH-H--HHHHHHHHHhcCCceEEE-EeCCC----------cC---cHHHHHHHHHHcCCC--EEeec
Q 014369          293 EISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAV-HLHDT----------YG---QSLPNILISLQMGIS--TVDCS  353 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~-v--~~li~~l~~~~p~~~i~~-H~HNd----------~G---lA~ANaLaAl~aGa~--~VD~S  353 (426)
                      .|.|+.-.-...+.. +  -.-+..+++.+|+.+|.+ ..|--          -|   +-..-+++|+.+||+  .|+.=
T Consensus       164 ~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H  243 (285)
T 3sz8_A          164 RVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH  243 (285)
T ss_dssp             CEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred             cEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence            888876433221111 0  223666788887557888 66652          12   236778999999999  67543


Q ss_pred             c
Q 014369          354 V  354 (426)
Q Consensus       354 v  354 (426)
                      .
T Consensus       244 ~  244 (285)
T 3sz8_A          244 P  244 (285)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}

Probab=91.25  E-value=2.3  Score=40.89  Aligned_cols=136  Identities=10%  Similarity=-0.003  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEe-eecCCCCCCCC-------------H-------HHHHHHHHHHHhCCCCEEE
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSC-VVGCPVEGAIP-------------P-------SKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~-~fg~pd~~r~~-------------~-------~~l~~~~~~l~~~Gad~I~  295 (426)
                      +++.++.+++.++.|+++|.++.+.... .+|. .....+             .       +.+.++++.+.+.|+. +.
T Consensus       104 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~  181 (335)
T 2qw5_A          104 RQEALEYLKSRVDITAALGGEIMMGPIVIPYGV-FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LA  181 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC-CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEeccccCcccc-ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EE
Confidence            4567888899999999999886521000 0111 001111             1       2344455556667764 44


Q ss_pred             EcC-----CCCCCCHHHHHHHHHHHHHhcCCceEEE-----EeCCCcCcHHH---HHHHHHH--cCCCEEeecccCCCCC
Q 014369          296 LGD-----TIGVGTPGTVVPMLEAVMAVVPVEKLAV-----HLHDTYGQSLP---NILISLQ--MGISTVDCSVAGLGGC  360 (426)
Q Consensus       296 l~D-----T~G~~~P~~v~~li~~l~~~~p~~~i~~-----H~HNd~GlA~A---NaLaAl~--aGa~~VD~Sv~GlGec  360 (426)
                      |--     +.-+.++.++.++++.+-.  |  .+++     |.+. .|....   ..+..+.  .=+..||..=.  .. 
T Consensus       182 lE~~~~~~~~~~~t~~~~~~ll~~v~~--~--~vgl~~D~~H~~~-~g~d~~~~~~~l~~~~~~~ri~~vHlkD~--~~-  253 (335)
T 2qw5_A          182 IEPITHWETPGPNKLSQLIEFLKGVKS--K--QVGVVIDSAHEIL-DGEGPEIFKTQVEYLAQQGRLHYVQVSPP--DR-  253 (335)
T ss_dssp             ECCCCTTTCSSCCSHHHHHHHHTTCCC--T--TEEEEEEHHHHHH-HCCCHHHHHHHHHHHHHHTCEEEEEECCT--TS-
T ss_pred             EeeCCcccccccCCHHHHHHHHHhcCC--C--CeeEEEecccchh-ccCChHHHHHHHHHhCCcCCEEEEEECCC--CC-
Confidence            432     2234466766665544321  2  2333     3222 122233   3333333  22445555432  22 


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~~  385 (426)
                       ..+| .|..+.+.++..|+. |++
T Consensus       254 -~~~G-~G~id~~~i~~~L~~-gy~  275 (335)
T 2qw5_A          254 -GALH-TSWLPWKSFLTPIVK-VYD  275 (335)
T ss_dssp             -SCSS-SSCCCHHHHHHHHHH-HCC
T ss_pred             -CCCC-CCCcCHHHHHHHHHc-cCC
Confidence             1244 689999999999998 774

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=91.21  E-value=3.2  Score=41.64  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC---------------CCC--------------------CCCCH-----
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE--------------------GAIPP-----  276 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~---------------pd~--------------------~r~~~-----  276 (426)
                      .++.++..+++++.++++|-++.+.|... |-               |-+                    ....|     
T Consensus        80 ~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~  158 (377)
T 2r14_A           80 TDAQEAGWKGVVEAVHAKGGRIALQLWHV-GRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALET  158 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCG
T ss_pred             CHHHHHHHHHHHHHHhhcCCeEEEEccCC-ccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCH
Confidence            35667778888889999999888888652 10               000                    00123     


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEEc-------------------CCCCCCCHH---HHHHHHHHHHHhcCCceEEEE
Q 014369          277 -------SKVAYVAKELHDMGCFEISLG-------------------DTIGVGTPG---TVVPMLEAVMAVVPVEKLAVH  327 (426)
Q Consensus       277 -------~~l~~~~~~l~~~Gad~I~l~-------------------DT~G~~~P~---~v~~li~~l~~~~p~~~i~~H  327 (426)
                             +.+.+.++.+.++|.|.|-|-                   |-.|...-.   .+.++++++++.++..+|++-
T Consensus       159 ~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vr  238 (377)
T 2r14_A          159 DEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIR  238 (377)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEE
Confidence                   567778888899999988872                   555544333   367779999998873267776


Q ss_pred             eCC--Cc-----CcHH----HHHHHHHHcCCCEEeeccc
Q 014369          328 LHD--TY-----GQSL----PNILISLQMGISTVDCSVA  355 (426)
Q Consensus       328 ~HN--d~-----GlA~----ANaLaAl~aGa~~VD~Sv~  355 (426)
                      ..-  .+     |...    .-+.+.-++|+++|+.+-.
T Consensus       239 ls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  277 (377)
T 2r14_A          239 LTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEP  277 (377)
T ss_dssp             ECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             eccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            532  11     2322    3344445799999998764

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=91.14  E-value=0.81  Score=45.90  Aligned_cols=72  Identities=10%  Similarity=0.078  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      +...+.++++.++|+|.|.+-=+.|  .+..+.++|+.+++.+|..+|.. -.     .....+..++++|||.|.+++.
T Consensus        99 ~~~~e~~~~a~~aGvdvI~id~a~G--~~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~g  171 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCVDVAHA--HAKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGIG  171 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCC--SSHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECCS
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCC--CcHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcCC
Confidence            5567789999999999776622334  46778889999999887655555 22     3456788999999999998644

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=91.14  E-value=2.1  Score=42.11  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC----------CCC-----CCCC------------HHHHHHHHHHHHhC
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC----------PVE-----GAIP------------PSKVAYVAKELHDM  289 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~----------pd~-----~r~~------------~~~l~~~~~~l~~~  289 (426)
                      .++.++..+++++.++++|-++.+.|... |-          |-+     ....            ++.+.+.++.+.++
T Consensus        78 ~d~~~~~~~~~~~~vh~~g~~i~~QL~h~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~a  156 (338)
T 1z41_A           78 SDEHIEGFAKLTEQVKEQGSKIGIQLAHA-GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEA  156 (338)
T ss_dssp             STHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEecCC-CcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence            34556777888888999998888778653 10          000     0011            24667778888999


Q ss_pred             CCCEEEEcC-------------------CCCCCC---HHHHHHHHHHHHHhcCCceEEEEeCCC----cCc----HHHHH
Q 014369          290 GCFEISLGD-------------------TIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDT----YGQ----SLPNI  339 (426)
Q Consensus       290 Gad~I~l~D-------------------T~G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd----~Gl----A~ANa  339 (426)
                      |.|.|.|-=                   -.|...   +..+.++++++++.+ +.+|.+-.--+    -|.    ++.-+
T Consensus       157 GfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~~g~~~~~~~~~a  235 (338)
T 1z41_A          157 GFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTDKGLDIADHIGFA  235 (338)
T ss_dssp             TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCSTTSCCHHHHHHHH
T ss_pred             CCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCCCCCCHHHHHHHH
Confidence            999887642                   233322   345788899999988 44666654211    132    33334


Q ss_pred             HHHHHcCCCEEeecccC
Q 014369          340 LISLQMGISTVDCSVAG  356 (426)
Q Consensus       340 LaAl~aGa~~VD~Sv~G  356 (426)
                      ....++|+++|+.+-..
T Consensus       236 ~~l~~~Gvd~i~v~~~~  252 (338)
T 1z41_A          236 KWMKEQGVDLIDCSSGA  252 (338)
T ss_dssp             HHHHHTTCCEEEEECCC
T ss_pred             HHHHHcCCCEEEEecCc
Confidence            44458999999997643

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=91.11  E-value=3  Score=39.12  Aligned_cols=165  Identities=12%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             HhCCCCeEEEecCCCCCc-cccccCHHHHHHHhH---hcCCCcEEEEeCC---------------hhhHHHHHHcCCCEE
Q 014369          158 VSSGLPVVEATSFVSPKW-VPQLADARDVMEAVR---DLEGARLPVLTPN---------------LKGFEAAIAAGAKEV  218 (426)
Q Consensus       158 ~~~Gv~~IEvG~~~s~~~-~p~~~D~~~v~~~i~---~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~V  218 (426)
                      .+.|.++||+=.-....+ -|.    ..+++.++   +..++.+.+++|.               ++|++.+.++|++.|
T Consensus        18 ~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGv   93 (224)
T 2bdq_A           18 DKAIISRVELCDNLAVGGTTPS----YGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDAL   93 (224)
T ss_dssp             CTTTCCEEEEEBCGGGTCBCCC----HHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHcCCCEEEEcCCcccCCcCCC----HHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEE
Confidence            467999999954211111 122    23344444   4446777777752               247788899999999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .+-+-..|-.      .+    .++++++++.|+  |+.+.  |=.+|   |.. ..++   .+..+.+.++|+++|-  
T Consensus        94 V~G~Lt~dg~------iD----~~~~~~Li~~a~--~~~vT--FHRAF---D~~~~~d~---~~ale~L~~lGv~rIL--  151 (224)
T 2bdq_A           94 VLGILTSNNH------ID----TEAIEQLLPATQ--GLPLV--FHMAF---DVIPKSDQ---KKSIDQLVALGFTRIL--  151 (224)
T ss_dssp             EECCBCTTSS------BC----HHHHHHHHHHHT--TCCEE--ECGGG---GGSCTTTH---HHHHHHHHHTTCCEEE--
T ss_pred             EEeeECCCCC------cC----HHHHHHHHHHhC--CCeEE--EECch---hccCCcCH---HHHHHHHHHcCCCEEE--
Confidence            8876544421      11    455667777775  56654  44445   221 1233   3457788899999987  


Q ss_pred             CCCCCCC---HHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHH-HcCCCEEeec
Q 014369          298 DTIGVGT---PGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISL-QMGISTVDCS  353 (426)
Q Consensus       298 DT~G~~~---P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl-~aGa~~VD~S  353 (426)
                       |.|...   ..+-.++++.+.+... .+.|-.=    -|.-..|.-.=+ +.|++.||.|
T Consensus       152 -TSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~G----gGV~~~Ni~~l~~~tGv~e~H~s  207 (224)
T 2bdq_A          152 -LHGSSNGEPIIENIKHIKALVEYANNRIEIMVG----GGVTAENYQYICQETGVKQAHGT  207 (224)
T ss_dssp             -ECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEEC----SSCCTTTHHHHHHHHTCCEEEET
T ss_pred             -CCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeC----CCCCHHHHHHHHHhhCCCEEccc
Confidence             666543   3454555555555432 2222221    134445555544 4799999976

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=91.00  E-value=2.1  Score=43.50  Aligned_cols=125  Identities=13%  Similarity=0.185  Sum_probs=73.1

Q ss_pred             HHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCChHH
Q 014369          151 VELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASASEAF  228 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~  228 (426)
                      .+.++.|.++|++.|.+.+. ..+.      ...+.++.++..-+..+.+ -+.+.+..+.+.++|+|.|.+.......+
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~------~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~  219 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSL------NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSIC  219 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBH------HHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC------
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcc------cHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCc
Confidence            67899999999999998532 2221      1133444444322555543 45678889999999999999843211111


Q ss_pred             Hhh---hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          229 SKS---NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       229 ~~~---~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      ...   ..+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.++    .++||+.+.+.
T Consensus       220 ~tr~~~g~g~p---~~~al~~v~~~~~~~~IPVIA---------~GGI~~~~di~ka----lalGAd~V~vG  275 (400)
T 3ffs_A          220 TTRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIGKA----LAVGASSVMIG  275 (400)
T ss_dssp             ---CCSCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHHHHHHH----HTTTCSEEEEC
T ss_pred             ccccccccchh---HHHHHHHHHHHHHhcCCCEEe---------cCCCCCHHHHHHH----HHcCCCEEEEC
Confidence            111   11122   244555666666677887752         2344556665543    36899988775

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=90.95  E-value=0.21  Score=48.33  Aligned_cols=146  Identities=16%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-CCCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-pd~~r~~~~~l~~~~  283 (426)
                      +|+=......+|.+-+...++-.+             .++++.++.++++|+.|.      +|. ..+....-..+.++.
T Consensus        56 ~DlLe~ag~yID~lKfg~GTs~l~-------------~~l~ekI~l~~~~gV~v~------~GGTlfE~~l~qg~~~~yl  116 (276)
T 1u83_A           56 KDAIAGASDYIDFVKFGWGTSLLT-------------KDLEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFH  116 (276)
T ss_dssp             HHHHHHHGGGCCEEEECTTGGGGC-------------TTHHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhhhcceEEecCcchhhh-------------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCcHHHHH
Confidence            444444556789999987766542             116788899999999876      322 000000012455677


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCc-e-----EEEEeCCCcCcHHHHHHHHHHcCCCEE--eecc-
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-K-----LAVHLHDTYGQSLPNILISLQMGISTV--DCSV-  354 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~-~-----i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv-  354 (426)
                      +.+.++|.+.|-|.|..--+.+++-.++|+.+++.+-.. .     .+...=-+....+..+...++|||+.|  ++-= 
T Consensus       117 ~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRES  196 (276)
T 1u83_A          117 RYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARES  196 (276)
T ss_dssp             HHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTSEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC----
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhhcEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeecc
Confidence            888899999999999999999999999999888765210 1     111344567888899999999999955  5511 


Q ss_pred             --cCCCCCCCCCCCCCcccHHHH
Q 014369          355 --AGLGGCPYAKGASGNVATEDV  375 (426)
Q Consensus       355 --~GlGecP~a~graGNa~lEev  375 (426)
                        .|+=+      ..|+.-.+.+
T Consensus       197 G~~Gi~~------~~g~~r~d~v  213 (276)
T 1u83_A          197 GTGGICS------SSGDVRFQIV  213 (276)
T ss_dssp             --------------------CCH
T ss_pred             CCCCccC------CCCCCcHHHH
Confidence              26666      6777766655

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=90.94  E-value=1.2  Score=42.95  Aligned_cols=203  Identities=15%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             HHHHHHhCCCCeEEEecC--CCCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C-----Ch----hhHHHHHHcCCC
Q 014369          153 LIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P-----NL----KGFEAAIAAGAK  216 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~--~s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~-----~~----~di~~a~~~Gv~  216 (426)
                      -++.++++|++.|=+|..  +...+.|.  .-+.++++..++.+. .+.+.+++  +     +.    +-++...++|+.
T Consensus        28 sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaa  107 (275)
T 2ze3_A           28 SARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAALGVA  107 (275)
T ss_dssp             HHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHcCCc
Confidence            356677889999999842  11222342  245677777766542 12233333  2     22    345667789999


Q ss_pred             EEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC--------CHHHHHHHHHHHHh
Q 014369          217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--------PPSKVAYVAKELHD  288 (426)
Q Consensus       217 ~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~--------~~~~l~~~~~~l~~  288 (426)
                      -|+|-.....   ..+-=.+.++..++++.+++.+++.|++..+  .   +--|+...        ..+...+-++++.+
T Consensus       108 gv~iED~~~~---~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i--~---aRtda~~~~~g~~~~~~~~~ai~Ra~ay~e  179 (275)
T 2ze3_A          108 GVNLEDATGL---TPTELYDLDSQLRRIEAARAAIDASGVPVFL--N---ARTDTFLKGHGATDEERLAETVRRGQAYAD  179 (275)
T ss_dssp             EEEEECBCSS---SSSCBCCHHHHHHHHHHHHHHHHHHTSCCEE--E---EECCTTTTTCSSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcCC---CCCccCCHHHHHHHHHHHHHhHhhcCCCeEE--E---EechhhhccccccchhhHHHHHHHHHHHHH
Confidence            9999977541   1122247889999998888887777876432  1   11122111        24667777788899


Q ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 014369          289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG  368 (426)
Q Consensus       289 ~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG  368 (426)
                      +|||.|.+.=   .-+++.+.++.+.+.  +|   +-+-+..  ++-  ..-.--++|+++|-.....+        |+-
T Consensus       180 AGAd~i~~e~---~~~~~~~~~i~~~~~--~P---~n~~~~~--~~~--~~~eL~~lGv~~v~~~~~~~--------raa  239 (275)
T 2ze3_A          180 AGADGIFVPL---ALQSQDIRALADALR--VP---LNVMAFP--GSP--VPRALLDAGAARVSFGQSLM--------LAT  239 (275)
T ss_dssp             TTCSEEECTT---CCCHHHHHHHHHHCS--SC---EEEECCT--TSC--CHHHHHHTTCSEEECTTHHH--------HHH
T ss_pred             CCCCEEEECC---CCCHHHHHHHHHhcC--CC---EEEecCC--CCC--CHHHHHHcCCcEEEEChHHH--------HHH
Confidence            9999999854   344566666655542  34   4443332  222  23445578999997666654        567


Q ss_pred             cccHHHHHHHHHhCC
Q 014369          369 NVATEDVVYMLSGLG  383 (426)
Q Consensus       369 Na~lEevv~~L~~lG  383 (426)
                      +.++++++..++.-|
T Consensus       240 ~~a~~~~~~~i~~~g  254 (275)
T 2ze3_A          240 LGLVQRMAAELHAAE  254 (275)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhC
Confidence            788888888888766

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=90.82  E-value=2.2  Score=40.87  Aligned_cols=135  Identities=12%  Similarity=0.049  Sum_probs=83.2

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC--Cce----EEEEeCCCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP--VEK----LAVHLHDTY  332 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p--~~~----i~~H~HNd~  332 (426)
                      ++.+.|.|... .+.+.-..-++.+.+.||+.|-+.=-+|   ...-..+.+-|+.+++..+  ..+    |+...=+|.
T Consensus        71 v~tVigFP~G~-~~~~~Kv~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~  149 (260)
T 1p1x_A           71 IATVTNFPHGN-DDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDE  149 (260)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSH
T ss_pred             EEEEeCCCCCC-CcHHHHHHHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcH
Confidence            44556778654 4555445557788889999998887777   4445677777777777542  112    222222343


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-----CCCCC------CcC-hhhHHHHHHHH
Q 014369          333 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-----LGVET------NVD-LRKLMLAGDFI  400 (426)
Q Consensus       333 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-----lG~~~------~iD-l~~L~~la~~v  400 (426)
                      -.=...+..|+++|||+|=+|- |.        .+|++..|++..+.+.     .|...      ||. ++...+.-+.-
T Consensus       150 e~i~~a~~ia~eaGADfVKTST-Gf--------~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~ag  220 (260)
T 1p1x_A          150 ALIRKASEISIKAGADFIKTST-GK--------VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIA  220 (260)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCC-SC--------SSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhh
Confidence            3223556778999999998885 22        2477899987776654     23222      343 55555555555


Q ss_pred             HHHhCC
Q 014369          401 NKHLGR  406 (426)
Q Consensus       401 ~~~~g~  406 (426)
                      .+.+|.
T Consensus       221 a~~lG~  226 (260)
T 1p1x_A          221 DELFGA  226 (260)
T ss_dssp             HHHHCT
T ss_pred             hhhccc
Confidence            555554

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=90.74  E-value=1.2  Score=43.06  Aligned_cols=82  Identities=13%  Similarity=0.029  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... ..++-+|. +|+..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  102 (297)
T 3flu_A           23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG  102 (297)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999   5688888899999888763 45666664 688999999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus       103 adavlv~  109 (297)
T 3flu_A          103 ADYTLSV  109 (297)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=90.72  E-value=15  Score=37.02  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=71.9

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHh-hhc--CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCC------C-
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSK-SNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------G-  272 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~-~~~--~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~------~-  272 (426)
                      ..++...++|+..|||-+-+.+.... ..+  +.   ..++.+..+++.||++|++|...+-+.  +..|-.      - 
T Consensus        52 d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~---~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~  128 (399)
T 1ur4_A           52 DIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGN---NDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWA  128 (399)
T ss_dssp             CHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTC---CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGT
T ss_pred             hHHHHHHHCCCCEEEEeeecCCcccccCccCCCC---CCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCccccc
Confidence            45677788999998875543321000 001  11   126677889999999999998654221  001110      0 


Q ss_pred             CCCH--------HHHHHHHHHHHhCCC--CEEEEcC-C-CCC---CCHHHHHHH----HHHHHHhcCCceEEEEeCCCcC
Q 014369          273 AIPP--------SKVAYVAKELHDMGC--FEISLGD-T-IGV---GTPGTVVPM----LEAVMAVVPVEKLAVHLHDTYG  333 (426)
Q Consensus       273 r~~~--------~~l~~~~~~l~~~Ga--d~I~l~D-T-~G~---~~P~~v~~l----i~~l~~~~p~~~i~~H~HNd~G  333 (426)
                      ..+.        ++..++++.+.+.|+  +.|.+.. + .|.   ....++.++    ++++|+..|..+|.+|..+-..
T Consensus       129 ~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~  208 (399)
T 1ur4_A          129 NLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPET  208 (399)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence            0122        233456667777774  4665543 1 122   224554444    5777788888788899876554


Q ss_pred             c
Q 014369          334 Q  334 (426)
Q Consensus       334 l  334 (426)
                      .
T Consensus       209 ~  209 (399)
T 1ur4_A          209 S  209 (399)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=90.62  E-value=1  Score=43.47  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=70.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .++.++-.++++.+.+... ..++-+|. +|+..-++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (291)
T 3tak_A           17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG   96 (291)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999   4688888999999888763 45676765 678889999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=..
T Consensus        97 adavlv~  103 (291)
T 3tak_A           97 ADAALLV  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9987543

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=90.55  E-value=0.73  Score=45.24  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEc-CCCCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLG-DTIGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~-DT~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+...| .+. .+..++...-+..+++.+.+....
T Consensus         5 ~~~ll~~A~~~~yAV~A-----fNv-----~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   74 (307)
T 3n9r_A            5 GNEILLKAHKEGYGVGA-----FNF-----VNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EEC-----SSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            45788899999987753     322     357889999999999987744 343 233334445667777777766444


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  359 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  359 (426)
                      +|+.+|.  |.|....-...|+++|.+  .+|+|-..+-|
T Consensus        75 VPValHL--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~ee  112 (307)
T 3n9r_A           75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE  112 (307)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCHHH
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHhCCCcEEEECCCCCHHH
Confidence            5677765  556667899999999998  67998775543

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=90.54  E-value=1.8  Score=42.83  Aligned_cols=141  Identities=16%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             HHHHHHHHH-hCCCCeEEEecCC-CCCccccccCHHHHHHHhH---hcCCCcEEEE-----eCChhhHHHHHHcCCCEEE
Q 014369          150 KVELIRRLV-SSGLPVVEATSFV-SPKWVPQLADARDVMEAVR---DLEGARLPVL-----TPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       150 ki~I~~~L~-~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l-----~~~~~di~~a~~~Gv~~V~  219 (426)
                      ..++++.+. +.|.+.|.+|.-+ .|...+  ...++..+.++   ...++.++.-     +.+.+-+++|+++|.+...
T Consensus        82 ~~~~A~~~v~~~GAdiIDIg~eStrP~~~~--vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~  159 (323)
T 4djd_D           82 PGRWAQKCVAEYGADLIYLKLDGADPEGAN--HSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENL  159 (323)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHcCCCEEEEcCccCCCCCCC--CCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCC
Confidence            677888887 9999999998543 333221  12344444444   3346666666     4445667889998876322


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCC--CEEEEc
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC--FEISLG  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Ga--d~I~l~  297 (426)
                      +.-+++.            +   ++.+++..|+++|..|.  ++.    +    .+.+.+.++.+.+.++|+  +.|.|=
T Consensus       160 lINsv~~------------~---~~~~m~~laa~~g~~vV--lmh----~----~d~~~~~~l~~~a~~~GI~~e~IIlD  214 (323)
T 4djd_D          160 LLGNAEQ------------E---NYKSLTAACMVHKHNII--ARS----P----LDINICKQLNILINEMNLPLDHIVID  214 (323)
T ss_dssp             EEEEEBT------------T---BCHHHHHHHHHHTCEEE--EEC----S----SCHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred             eEEECCc------------c---cHHHHHHHHHHhCCeEE--EEc----c----chHHHHHHHHHHHHHcCCCHHHEEEe
Confidence            2223332            0   12356667788898776  231    2    256888889999999998  667764


Q ss_pred             CCCCC--CCHHHHHHHHHHHHH
Q 014369          298 DTIGV--GTPGTVVPMLEAVMA  317 (426)
Q Consensus       298 DT~G~--~~P~~v~~li~~l~~  317 (426)
                      =.+|.  -+.++..++++.++.
T Consensus       215 Pg~g~fgk~~e~~l~~l~~ir~  236 (323)
T 4djd_D          215 PSIGGLGYGIEYSFSIMERIRL  236 (323)
T ss_dssp             CCCCCTTTTHHHHHHHHHHHHH
T ss_pred             CCCccccCCHHHHHHHHHHHHH
Confidence            44441  267888888888886

>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A

Probab=90.50  E-value=14  Score=37.10  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCC-----C----CCCHHHHHHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHH-
Q 014369          278 KVAYVAKELHDMGCFEISLGDTI-----G----VGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQ-  344 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~-----G----~~~P~~v~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~-  344 (426)
                      ++.+++..+.++|+....=+|.-     |    +-+++++.++++.+-.  |...|-+   |+|...|.-+...+...- 
T Consensus       201 ~L~~i~~~Aee~GV~Laiep~dpp~~~~Gl~riv~t~e~~~rll~~vds--p~~gl~lDtG~l~~~~~~D~~~~i~~~~~  278 (386)
T 3bdk_A          201 FIKAILPTAEEAGVKMAIHPDDPPYGIFGLPRIITGQEAVERFLNLYDS--EHNGITMCVGSYASDPKNDVLAMTEYALK  278 (386)
T ss_dssp             HHHHHHHHHHSSSCEEEECCCSSSSCCTTCCCCCCSHHHHHHHHHTTCS--TTEEEEEEHHHHHTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEEeeCCcccccccCCceeCCHHHHHHHHHhcCC--CCEEEEEccCchhhcCCCCHHHHHHHhCC
Confidence            35556666667777655555411     2    3456666655544321  2112222   334332333333443332 


Q ss_pred             -cCCCEEeec-c----cCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          345 -MGISTVDCS-V----AGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       345 -aGa~~VD~S-v----~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                       .=+..||.. +    .|+-+++.-+ +.|.++...++.+|+..|++
T Consensus       279 ~~RI~hvHlkDv~~~~~gf~e~~~g~-g~G~vD~~~i~~aL~~~gY~  324 (386)
T 3bdk_A          279 RNRINFMHTRNVTAGAWGFQETAHLS-QAGDIDMNAVVKLLVDYDWQ  324 (386)
T ss_dssp             TTCEEEEECCCEEEETTEEEECCSSG-GGSSCCHHHHHHHHHHTTCC
T ss_pred             cCeEEEEeecCCCCCCCCccccCCCc-CCCCcCHHHHHHHHHHhCCc
Confidence             113344432 1    1111111111 26899999999999987764

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=90.47  E-value=3.7  Score=38.59  Aligned_cols=169  Identities=12%  Similarity=0.031  Sum_probs=88.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEEEeCChhhHHHHHHcCCCEEEEec-cCChH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFEAAIAAGAKEVAIFA-SASEA  227 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~-~~Sd~  227 (426)
                      .++++.|.++|.|.||+|.-   ..    ...+.+++.++++  .++.+..+......+    ++|+|.+-+.. +.++.
T Consensus        23 ~~~~~~l~~~GaD~IelG~S---~g----~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i----~~gvDg~iipdLp~ee~   91 (234)
T 2f6u_A           23 DEIIKAVADSGTDAVMISGT---QN----VTYEKARTLIEKVSQYGLPIVVEPSDPSNV----VYDVDYLFVPTVLNSAD   91 (234)
T ss_dssp             HHHHHHHHTTTCSEEEECCC---TT----CCHHHHHHHHHHHTTSCCCEEECCSSCCCC----CCCSSEEEEEEETTBSB
T ss_pred             HHHHHHHHHcCCCEEEECCC---CC----CCHHHHHHHHHHhcCCCCCEEEecCCcchh----hcCCCEEEEcccCCCCC
Confidence            45689999999999999972   11    1234455544433  345544454332222    67999877763 32221


Q ss_pred             HHhhhcCCCHHHHHHHHHHHH----HHHHhcC-----CcEE--EEEEeeecCCCC---------CCCCHHHHHHHHHHHH
Q 014369          228 FSKSNINCSIEDSLVRYRAVA----HAAKVLS-----IPVR--GYVSCVVGCPVE---------GAIPPSKVAYVAKELH  287 (426)
Q Consensus       228 ~~~~~~~~s~~e~l~~~~~~v----~~Ak~~G-----~~v~--~~v~~~fg~pd~---------~r~~~~~l~~~~~~l~  287 (426)
                       .+  +      .+..-.+.+    +.++++|     +.+.  +|+..   .|+.         ...+++.+..+++...
T Consensus        92 -~~--~------~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~---~P~~~~~rl~~g~~~~~~e~~~~~a~~g~  159 (234)
T 2f6u_A           92 -GD--W------ITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVL---NPDSAVARVTKALCNIDKELAASYALVGE  159 (234)
T ss_dssp             -GG--G------TTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEEC---CTTSHHHHHTTBCCCCCHHHHHHHHHHHH
T ss_pred             -HH--H------HhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEE---CCCCceEEeecCCCCCCHHHHHHHHHhhh
Confidence             00  0      111111222    2236677     6543  34432   3432         1136666777776655


Q ss_pred             h-CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          288 D-MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       288 ~-~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      + +|-..|++.- .|..   ...++++.+++..+..++.+=+    |.-..-....+..||+.|
T Consensus       160 ~~l~~~~Vyl~~-~G~~---~~~~~i~~i~~~~~~~Pv~vGg----GI~s~e~a~~~~~gAd~V  215 (234)
T 2f6u_A          160 KLFNLPIIYIEY-SGTY---GNPELVAEVKKVLDKARLFYGG----GIDSREKAREMLRYADTI  215 (234)
T ss_dssp             HTTCCSEEEEEC-TTSC---CCHHHHHHHHHHCSSSEEEEES----CCCSHHHHHHHHHHSSEE
T ss_pred             hhcCCCEEEEeC-CCCc---chHHHHHHHHHhCCCCCEEEEe----cCCCHHHHHHHHhCCCEE
Confidence            3 4556777654 6752   2567888888876233444321    222223333333399876

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=90.45  E-value=0.75  Score=44.29  Aligned_cols=73  Identities=10%  Similarity=0.108  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc--CCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLG--DTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                      .+.+...++++++.++|++.|-+.  .+ +-..|  ....++++.+++. +..++.+|.-|     ...+..|+++|++.
T Consensus        23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~~~~~~e~~~~i~~~-~~~~v~~l~~n-----~~~i~~a~~~G~~~   95 (295)
T 1ydn_A           23 VPTADKIALINRLSDCGYARIEATSFVS-PKWVPQLADSREVMAGIRRA-DGVRYSVLVPN-----MKGYEAAAAAHADE   95 (295)
T ss_dssp             CCHHHHHHHHHHHTTTTCSEEEEEECSC-TTTCGGGTTHHHHHHHSCCC-SSSEEEEECSS-----HHHHHHHHHTTCSE
T ss_pred             cCHHHHHHHHHHHHHcCcCEEEEccCcC-ccccccccCHHHHHHHHHhC-CCCEEEEEeCC-----HHHHHHHHHCCCCE
Confidence            344555555555655665554442  11 11112  1233444444332 34455555522     34445555666665


Q ss_pred             Eeec
Q 014369          350 VDCS  353 (426)
Q Consensus       350 VD~S  353 (426)
                      |...
T Consensus        96 V~i~   99 (295)
T 1ydn_A           96 IAVF   99 (295)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=90.41  E-value=4.7  Score=40.15  Aligned_cols=121  Identities=15%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC--------------CC-----C---------------CCCCH-----
Q 014369          236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PV-----E---------------GAIPP-----  276 (426)
Q Consensus       236 s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~--------------pd-----~---------------~r~~~-----  276 (426)
                      ..++.++..+++++.++++|-++.+.|... |-              |-     .               ....|     
T Consensus        75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~  153 (365)
T 2gou_A           75 YTPEQIAGWRIVTEAVHAKGCAIFAQLWHV-GRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTK  153 (365)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCEEEEEEECC-TTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCH
Confidence            345667778888889999998888778642 10              00     0               00223     


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEE-------------------cCCCCCCC---HHHHHHHHHHHHHhcCCceEEEE
Q 014369          277 -------SKVAYVAKELHDMGCFEISL-------------------GDTIGVGT---PGTVVPMLEAVMAVVPVEKLAVH  327 (426)
Q Consensus       277 -------~~l~~~~~~l~~~Gad~I~l-------------------~DT~G~~~---P~~v~~li~~l~~~~p~~~i~~H  327 (426)
                             +.+.+.++.+.++|.|.|-|                   .|-.|...   +..+.++++++++.++..+|.+-
T Consensus       154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr  233 (365)
T 2gou_A          154 ADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR  233 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE
Confidence                   56777888889999999988                   33344332   23467889999998863278874


Q ss_pred             eCC--Cc-----CcHH----HHHHHHHHcCCCEEeecccCC
Q 014369          328 LHD--TY-----GQSL----PNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       328 ~HN--d~-----GlA~----ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      ..-  .+     |...    .-+.++.++|+++|+.+-..+
T Consensus       234 is~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~  274 (365)
T 2gou_A          234 LAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW  274 (365)
T ss_dssp             ECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred             EccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            432  11     2232    334455689999999986433

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=90.37  E-value=1  Score=41.91  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcCCCEEEEe
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~Gv~~V~i~  221 (426)
                      .-+++++.+.+.|++.|-+.-...... ..-.+. ++++.+++..++.+.+-  .++.++++.+++.|++.|.+.
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~-~~~~~~-~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig  108 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDT-EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN  108 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTC-SSCCCH-HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCcccC-CCcccH-HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence            457899999999999998754321110 011233 34445543334444433  357889999999999998875

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=90.37  E-value=7.2  Score=37.84  Aligned_cols=147  Identities=12%  Similarity=0.038  Sum_probs=87.0

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEe-ccCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIF-ASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  270 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~-~~~Sd~~~~~~-~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd  270 (426)
                      +-.+.++. .+--..+.+.++|++.|.+. .+++-.+-... ...|.++.+..++.+.+.+   ..+|.+.+      |.
T Consensus        18 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~---~~PviaD~------d~   88 (295)
T 1s2w_A           18 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDAS---DVPILLDA------DT   88 (295)
T ss_dssp             SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTC---SSCEEEEC------CS
T ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEecC------CC
Confidence            33455554 35445566667899988876 23321111111 1236677777766655443   45555332      22


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCC--------C----CCCH-HHHHHHHHHHHHhc--CCceEEEEeCCC----
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTI--------G----VGTP-GTVVPMLEAVMAVV--PVEKLAVHLHDT----  331 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--------G----~~~P-~~v~~li~~l~~~~--p~~~i~~H~HNd----  331 (426)
                      . --+++.+.+.++.+.++|+..|.|-|..        |    .+.| ++..+.|+++++..  ++..|-.-.-..    
T Consensus        89 G-yg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~  167 (295)
T 1s2w_A           89 G-YGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGW  167 (295)
T ss_dssp             S-CSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTC
T ss_pred             C-CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccc
Confidence            2 2257888999999999999999999997        3    2444 45566677777664  343344443222    


Q ss_pred             -cCcHHHHHHHHHHcCCCEE
Q 014369          332 -YGQSLPNILISLQMGISTV  350 (426)
Q Consensus       332 -~GlA~ANaLaAl~aGa~~V  350 (426)
                       +--++.-+.+-.++||+.|
T Consensus       168 g~~~ai~Ra~ay~eAGAd~i  187 (295)
T 1s2w_A          168 GLDEALKRAEAYRNAGADAI  187 (295)
T ss_dssp             CHHHHHHHHHHHHHTTCSEE
T ss_pred             cHHHHHHHHHHHHHcCCCEE
Confidence             1346777888899999965

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=90.36  E-value=1.7  Score=40.20  Aligned_cols=174  Identities=16%  Similarity=0.152  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-+++++.+.+.|++.|++.-+.... .....+ .+.++.++ ..++.+.+..  ++.++++.++++|++.|.+...  
T Consensus        30 ~~~~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~-~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~--  104 (241)
T 1qo2_A           30 KDPVELVEKLIEEGFTLIHVVDLSNAI-ENSGEN-LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK--  104 (241)
T ss_dssp             SCHHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTT-HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHH--
T ss_pred             cCHHHHHHHHHHcCCCEEEEecccccc-cCCchh-HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECch--
Confidence            345889999999999999985221100 000112 23344444 2344444432  5678999999999999987521  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe---ee---cCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC---VV---GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~---~f---g~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                                    .+++- +.++.+++.|-.+...+..   .+   |-...+..+   ..++++.+.++|++.|.+-++
T Consensus       105 --------------~l~~p-~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~---~~e~~~~~~~~G~~~i~~t~~  166 (241)
T 1qo2_A          105 --------------VLEDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEID---PVSLLKRLKEYGLEEIVHTEI  166 (241)
T ss_dssp             --------------HHHCT-THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCC---HHHHHHHHHTTTCCEEEEEET
T ss_pred             --------------HhhCh-HHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCC---HHHHHHHHHhCCCCEEEEEee
Confidence                          12211 1122224555333322322   00   000011123   345667778899999999774


Q ss_pred             C--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHH-HHHHHHHHc-----C-CCEE
Q 014369          300 I--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM-----G-ISTV  350 (426)
Q Consensus       300 ~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~-ANaLaAl~a-----G-a~~V  350 (426)
                      .  |...... .++++.+++.++. |+-.-    -|... .++...++.     | |+.|
T Consensus       167 ~~~g~~~g~~-~~~i~~l~~~~~i-Pvia~----GGI~~~~d~~~~~~~~~~~~G~adgv  220 (241)
T 1qo2_A          167 EKDGTLQEHD-FSLTKKIAIEAEV-KVLAA----GGISSENSLKTAQKVHTETNGLLKGV  220 (241)
T ss_dssp             THHHHTCCCC-HHHHHHHHHHHTC-EEEEE----SSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred             cccccCCcCC-HHHHHHHHHhcCC-cEEEE----CCCCCHHHHHHHHhcccccCCeEeEE
Confidence            2  2211111 4556666665532 33332    35553 677777777     7 6643

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=90.32  E-value=2  Score=43.04  Aligned_cols=90  Identities=19%  Similarity=0.291  Sum_probs=68.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      ..|.+...+.++++.++||+.|+++    +-. .+-++-++.+++..+. ||..-.|-|+-+|++    |+++|++-+  
T Consensus        42 T~D~~atv~Qi~~l~~aG~diVRva----vp~-~~~a~al~~I~~~~~v-PlvaDiHf~~~lal~----a~e~G~dkl--  109 (366)
T 3noy_A           42 THDVEATLNQIKRLYEAGCEIVRVA----VPH-KEDVEALEEIVKKSPM-PVIADIHFAPSYAFL----SMEKGVHGI--  109 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCEEEEE----CCS-HHHHHHHHHHHHHCSS-CEEEECCSCHHHHHH----HHHTTCSEE--
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeC----CCC-hHHHHHHHHHHhcCCC-CEEEeCCCCHHHHHH----HHHhCCCeE--
Confidence            3688899999999999999999983    333 3446778889988874 799999999987765    899999974  


Q ss_pred             cccCCCCCCCCCCCCCcc----cHHHHHHHHHhCCCC
Q 014369          353 SVAGLGGCPYAKGASGNV----ATEDVVYMLSGLGVE  385 (426)
Q Consensus       353 Sv~GlGecP~a~graGNa----~lEevv~~L~~lG~~  385 (426)
                      .++           .||.    -.++|+...+..|+.
T Consensus       110 RIN-----------PGNig~~~~~~~vv~~ak~~~~p  135 (366)
T 3noy_A          110 RIN-----------PGNIGKEEIVREIVEEAKRRGVA  135 (366)
T ss_dssp             EEC-----------HHHHSCHHHHHHHHHHHHHHTCE
T ss_pred             EEC-----------CcccCchhHHHHHHHHHHHcCCC
Confidence            333           4554    467788888776653

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=90.29  E-value=1.1  Score=44.46  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=51.0

Q ss_pred             HHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          281 YVAKELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       281 ~~~~~l~~~--Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      +.++.+.+.  |++.|.+-=+.|  .|..+.+.|+.+++.+|+.+|.+..    .+....+..|+++|||.|+++..|
T Consensus       121 ~~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g~  192 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIGP  192 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCCC
Confidence            345555665  888877633334  5677888999999999766777653    445678899999999999997543

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=90.26  E-value=2  Score=44.00  Aligned_cols=217  Identities=16%  Similarity=0.088  Sum_probs=120.1

Q ss_pred             CCCchhhhHHHHhhcCCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHH-HhCCCCe--EEEecC--CCCCcccccc
Q 014369          107 CNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRL-VSSGLPV--VEATSF--VSPKWVPQLA  180 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~-~f~~~~ki~I~~~L-~~~Gv~~--IEvG~~--~s~~~~p~~~  180 (426)
                      .|....|++.... ... +..-|+..|-....|.-|. .++.+.-..++..+ .++||+.  |=++.-  .+..|  |-.
T Consensus        22 ~n~e~i~Ail~aA-ee~-~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w--~~~   97 (420)
T 2fiq_A           22 AHPLVIEAALAFD-RNS-TRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCW--QQE   97 (420)
T ss_dssp             CCHHHHHHHHHHT-TTS-CCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGG--TTS
T ss_pred             CCHHHHHHHHHHH-HHc-CCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccc--ccc
Confidence            3444455555554 222 3345556665544433222 22345555555554 4467773  444321  11111  111


Q ss_pred             CHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHH--HHHHHHHHHHHhcCCc-
Q 014369          181 DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL--VRYRAVAHAAKVLSIP-  257 (426)
Q Consensus       181 D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l--~~~~~~v~~Ak~~G~~-  257 (426)
                      ..++-|+..              .+.+..++++|...|++=.|.+..    .-+...++.+  ++..+++++|++. .. 
T Consensus        98 ~~~~am~~a--------------~e~i~~aI~aGFtSVMiD~S~~~~----~~~~pl~eNi~~~rt~elv~~Ah~~-~~~  158 (420)
T 2fiq_A           98 NVDAAMEKS--------------VELVKAYVRAGFSKIHLDASMSCA----GDPIPLAPETVAERAAVLCFAAESV-ATD  158 (420)
T ss_dssp             BHHHHHHHH--------------HHHHHHHHHTTCCEEEECCCSCCB----TCCSSCCHHHHHHHHHHHHHHHHHH-CCH
T ss_pred             chhhhhhhH--------------HHHHHHHHHhCCCEEEECCCCCCC----CCCCCccHHHHHHHHHHHHHHHHHH-ccc
Confidence            223333222              256788999999999986553110    0012223444  4478899999886 32 


Q ss_pred             -EEEEEEeeecCCC---------C-C--CCCHHHHHHHHH----HHHhCCCCE-----EEEcCCCCC---------CCHH
Q 014369          258 -VRGYVSCVVGCPV---------E-G--AIPPSKVAYVAK----ELHDMGCFE-----ISLGDTIGV---------GTPG  306 (426)
Q Consensus       258 -v~~~v~~~fg~pd---------~-~--r~~~~~l~~~~~----~l~~~Gad~-----I~l~DT~G~---------~~P~  306 (426)
                       +.+.+..+.|.++         . .  .++|+...++++    .+.+.|+|.     |.|+=.+|.         +.++
T Consensus       159 ~~eaElG~vgG~Ev~v~~~~~~~~~~~~~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e  238 (420)
T 2fiq_A          159 CQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQ  238 (420)
T ss_dssp             HHHHHCEEEEECSSCC----------CCCCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGG
T ss_pred             CCcccceEEeeeecCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHH
Confidence             1111222233331         1 1  589999999887    677889876     335533333         3334


Q ss_pred             HHHHHHHHHHHhcCCce-EEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          307 TVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       307 ~v~~li~~l~~~~p~~~-i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .    ++.|++.++. + |.+-.|.+-|..-.+...+++.|+..|+
T Consensus       239 ~----l~~I~~~v~~-P~LVle~HGgSg~~~e~l~~~v~~Gi~kiN  279 (420)
T 2fiq_A          239 E----AQALAQWIEN-TRMVYEAHSTDYQTRTAYWELVRDHFAILK  279 (420)
T ss_dssp             G----GHHHHHHHTT-SSCEEEESCCTTCCHHHHHHHHHTTEEEEE
T ss_pred             H----HHHHHHhcCC-CCEEEecCCCCCCCHHHHHHHHHcCCCEEE
Confidence            4    4444444443 4 7777799999999999999999999987

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=90.22  E-value=4  Score=39.70  Aligned_cols=210  Identities=15%  Similarity=0.117  Sum_probs=122.9

Q ss_pred             HHHHHHhCCCCeEEEecC-C--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C-----Ch----hhHHHHHHcCC
Q 014369          153 LIRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P-----NL----KGFEAAIAAGA  215 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~-----~~----~di~~a~~~Gv  215 (426)
                      -++.++++|++.|=+|.. +  +..+.|.  .-+.++++..++.+. .+.+.+++  +     +.    +-++...++|+
T Consensus        29 sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa  108 (295)
T 1xg4_A           29 HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGA  108 (295)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCC
Confidence            366778899999999854 2  2233443  245677777666542 12223333  2     22    34566678999


Q ss_pred             CEEEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          216 KEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       216 ~~V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .-|+|-....+.   |..-+-=.+.++..++++.+++.+..-++.|.+--- ++     .....+...+-++++.++|||
T Consensus       109 ~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtd-a~-----~~~gl~~ai~ra~ay~eAGAd  182 (295)
T 1xg4_A          109 AGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTD-AL-----AVEGLDAAIERAQAYVEAGAE  182 (295)
T ss_dssp             SEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC-CH-----HHHCHHHHHHHHHHHHHTTCS
T ss_pred             eEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecH-Hh-----hhcCHHHHHHHHHHHHHcCCC
Confidence            999998776321   110000135677888887776665545555542110 00     011236778888899999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccH
Q 014369          293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVAT  372 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~l  372 (426)
                      .|.+.   |.-.++.+.++.+.+.  .|.. +-+-..+....  -+.-.--+.|+++|-....++        |+-+.++
T Consensus       183 ~i~~e---~~~~~~~~~~i~~~~~--iP~~-~N~~~~g~~p~--~~~~eL~~~G~~~v~~~~~~~--------~aa~~a~  246 (295)
T 1xg4_A          183 MLFPE---AITELAMYRQFADAVQ--VPIL-ANITEFGATPL--FTTDELRSAHVAMALYPLSAF--------RAMNRAA  246 (295)
T ss_dssp             EEEET---TCCSHHHHHHHHHHHC--SCBE-EECCSSSSSCC--CCHHHHHHTTCSEEEESSHHH--------HHHHHHH
T ss_pred             EEEEe---CCCCHHHHHHHHHHcC--CCEE-EEecccCCCCC--CCHHHHHHcCCCEEEEChHHH--------HHHHHHH
Confidence            99986   3445677777666653  4521 11111111111  122344578999997776665        5778888


Q ss_pred             HHHHHHHHhCCC
Q 014369          373 EDVVYMLSGLGV  384 (426)
Q Consensus       373 Eevv~~L~~lG~  384 (426)
                      ++++..|+..|-
T Consensus       247 ~~~~~~i~~~g~  258 (295)
T 1xg4_A          247 EHVYNVLRQEGT  258 (295)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHhCC
Confidence            888888876443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=90.18  E-value=1.1  Score=46.39  Aligned_cols=72  Identities=17%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  356 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~G  356 (426)
                      ..+.++.+.++|++.|.+.=+.|  .|....+.++.+++.+|+.++.+-    .++...-+..+.++|++.|.++..|
T Consensus       238 ~~~~a~~l~~aGvd~v~i~~~~G--~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~~~  309 (494)
T 1vrd_A          238 TMERVEKLVKAGVDVIVIDTAHG--HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGVGP  309 (494)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCC--SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHHHHhCCCEEEEEecCC--chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcCCC
Confidence            34577888999999999843334  677788999999999876666652    2455666788899999999996544

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=90.13  E-value=8  Score=38.62  Aligned_cols=125  Identities=17%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             HHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC--
Q 014369          151 VELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS--  225 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S--  225 (426)
                      .+.++.|.++|++.|++.... .++      ...+.++.++ ..++..+.+ -+.+.+.++.+.++|+|.|.+.....  
T Consensus       110 ~~~~~~lieaGvd~I~idta~G~~~------~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~  183 (366)
T 4fo4_A          110 EERVKALVEAGVDVLLIDSSHGHSE------GVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI  183 (366)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSH------HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTT
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCH------HHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCC
Confidence            566888999999999985322 211      1122333444 345666543 35678899999999999999842111  


Q ss_pred             -hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          226 -EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       226 -d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                       ..+.....+..   .+..+.++.+.++..+++|.+         +.+-.++..+.+    +.++||+.+.+.
T Consensus       184 ~~tr~~~g~g~p---~~~~l~~v~~~~~~~~iPVIA---------~GGI~~~~di~k----ala~GAd~V~vG  240 (366)
T 4fo4_A          184 CTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGDISK----AIAAGASCVMVG  240 (366)
T ss_dssp             BCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHHHH----HHHTTCSEEEES
T ss_pred             CCcccccCcccc---hHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEEC
Confidence             11111112222   244455666667777888752         234446666544    345899988775

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=90.12  E-value=9.6  Score=37.10  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=67.4

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +.++.+.+.|++.|.+.....            .       +.++++++.|+++...+           .+++    .++
T Consensus        93 ~~~~~~~~~g~d~V~l~~g~p------------~-------~~~~~l~~~g~~v~~~v-----------~s~~----~a~  138 (326)
T 3bo9_A           93 DLVKVCIEEKVPVVTFGAGNP------------T-------KYIRELKENGTKVIPVV-----------ASDS----LAR  138 (326)
T ss_dssp             HHHHHHHHTTCSEEEEESSCC------------H-------HHHHHHHHTTCEEEEEE-----------SSHH----HHH
T ss_pred             HHHHHHHHCCCCEEEECCCCc------------H-------HHHHHHHHcCCcEEEEc-----------CCHH----HHH
Confidence            567888899999998864421            1       33455677788776322           1233    355


Q ss_pred             HHHhCCCCEEEEcCC--CCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeec
Q 014369          285 ELHDMGCFEISLGDT--IGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCS  353 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT--~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~S  353 (426)
                      .+.++|+|.|.+-..  -|. ..+. ...++..+++.+. ++|-.=    =|.. -.|+.+++.+||+.|...
T Consensus       139 ~a~~~GaD~i~v~g~~~GG~~G~~~-~~~ll~~i~~~~~-iPviaa----GGI~~~~dv~~al~~GA~gV~vG  205 (326)
T 3bo9_A          139 MVERAGADAVIAEGMESGGHIGEVT-TFVLVNKVSRSVN-IPVIAA----GGIADGRGMAAAFALGAEAVQMG  205 (326)
T ss_dssp             HHHHTTCSCEEEECTTSSEECCSSC-HHHHHHHHHHHCS-SCEEEE----SSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHcCCCEEEEECCCCCccCCCcc-HHHHHHHHHHHcC-CCEEEE----CCCCCHHHHHHHHHhCCCEEEec
Confidence            677899999888431  121 1111 3356677776553 234332    3555 578888889999988755

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=90.12  E-value=1.7  Score=43.67  Aligned_cols=68  Identities=12%  Similarity=0.195  Sum_probs=51.9

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~-H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      .+.++.+.++|++.|.| ++ +...|..+.++++.+++.+|+.+|.+ ..+     ...-+..+.++|++.|.++.
T Consensus       155 ~~~a~~~~~~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v~-----~~~~a~~a~~~Gad~I~vg~  223 (404)
T 1eep_A          155 IERVEELVKAHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNIV-----TKEAALDLISVGADCLKVGI  223 (404)
T ss_dssp             HHHHHHHHHTTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHHCCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCCC-----cHHHHHHHHhcCCCEEEECC
Confidence            44566788899999988 32 33578889999999999987667776 333     25677888899999999954

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=89.98  E-value=0.99  Score=44.27  Aligned_cols=81  Identities=12%  Similarity=-0.013  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .++.++-.++++.+.+... ..+|-+|. +|+.--++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  106 (318)
T 3qfe_A           27 DTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAG  106 (318)
T ss_dssp             TEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999   4788999999999888763 45666655 688899999999999999


Q ss_pred             CCEEee
Q 014369          347 ISTVDC  352 (426)
Q Consensus       347 a~~VD~  352 (426)
                      |+.+=+
T Consensus       107 adavlv  112 (318)
T 3qfe_A          107 ANYVLV  112 (318)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            997754

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A

Probab=89.97  E-value=13  Score=36.68  Aligned_cols=132  Identities=12%  Similarity=-0.011  Sum_probs=78.3

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hc--CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VL--SIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak-~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .++.+++.|+..+.+++.  +.+.....|.+.++.++.+.+.++.++ +.  |+.++.-++..  .  .  .+++...+.
T Consensus       120 ~l~e~~~~GV~y~E~r~d--p~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~gi~~~li~~~~--r--~--~~~~~~~~~  191 (371)
T 2pgf_A          120 AVFNKYKEGVVLMEFRYS--PTFVAFKYNLDIELIHQAIVKGIKEVVELLDHKIHVALMCIGD--T--G--HEAANIKAS  191 (371)
T ss_dssp             HHHHHHHHTEEEEEEEEC--HHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEE--E--S--STTCCHHHH
T ss_pred             HHHHHHHCCCEEEEEEEC--cccccccCCCCHHHHHHHHHHHHHHHHHHccCCCEEEEEEEec--C--C--CCHHHHHHH
Confidence            456667789988877763  322123457788888988888777664 46  77765434322  1  1  122223333


Q ss_pred             HHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc-CcHH-HHHHHHHHc-CCCEE
Q 014369          283 AKELHD--MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQSL-PNILISLQM-GISTV  350 (426)
Q Consensus       283 ~~~l~~--~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~-GlA~-ANaLaAl~a-Ga~~V  350 (426)
                      ++.+.+  -++-.|-+...-..  |..+.+.++..++.  +.++.+|++.+. | +. .+...|+.. |+++|
T Consensus       192 ~~~a~~~~~~vvg~dl~g~e~~--~~~~~~~~~~A~~~--gl~~~~HagE~~~~-~~~~~i~~al~~lg~~ri  259 (371)
T 2pgf_A          192 ADFCLKHKADFVGFDHGGHEVD--LKEYKEIFDYVRES--GVPLSVHAGEDVTL-PNLNTLYSAIQVLKVERI  259 (371)
T ss_dssp             HHHHHHTTTTEEEEEEEESCCC--GGGGHHHHHHHHHT--TCCBEEEESCCTTS-SSSHHHHHHHHTSCCSEE
T ss_pred             HHHHHhCCCCEEEEecCCCccc--HHHHHHHHHHHHHc--CCcEEEeeCCCCCC-CchHHHHHHHhccCCCEE
Confidence            333333  22333333322112  88888888877664  357999999873 3 23 567788886 98876

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=89.94  E-value=1.4  Score=42.90  Aligned_cols=126  Identities=10%  Similarity=0.090  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEe-CCCcCcHHHHHHHHHHcCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~-HNd~GlA~ANaLaAl~aGa  347 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+..+..+|-++. +|+..-++..+..|-++||
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga  103 (313)
T 3dz1_A           24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA  103 (313)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999995   78889999999988877555777766 7889999999999999999


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh----CC---------CC--CC--cChhhHHHHHHHHHHHhCCCC
Q 014369          348 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LG---------VE--TN--VDLRKLMLAGDFINKHLGRPS  408 (426)
Q Consensus       348 ~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~----lG---------~~--~~--iDl~~L~~la~~v~~~~g~~~  408 (426)
                      +.+=+ +.     ||.+     ++-|+++..++.    .+         +.  ++  +..+-+.++++.+.++.|++.
T Consensus       104 davlv-~~-----P~~~-----~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKd  170 (313)
T 3dz1_A          104 AGVMI-AP-----PPSL-----RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKH  170 (313)
T ss_dssp             SEEEE-CC-----CTTC-----CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEEE
T ss_pred             CEEEE-CC-----CCCC-----CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEc
Confidence            98854 33     4421     245666666552    12         11  23  344555666555555666653

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=89.93  E-value=1.1  Score=43.77  Aligned_cols=129  Identities=12%  Similarity=0.060  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhc-CCceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVV-PVEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~-p~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+.. +.++|-+| ++|+.--++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G  103 (309)
T 3fkr_A           24 GDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG  103 (309)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998   568888899999988876 34678887 5788999999999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-----------CCCC-CC--cChhhHHHHHHHHHHHhCCC
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-----------LGVE-TN--VDLRKLMLAGDFINKHLGRP  407 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-----------lG~~-~~--iDl~~L~~la~~v~~~~g~~  407 (426)
                      |+.+=+.-      ||-.. .-.++-|+++..++.           |++. ++  +..+-+.++++.+.++.|++
T Consensus       104 adavlv~~------Pyy~~-~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~~~pnIvgiK  171 (309)
T 3fkr_A          104 AAMVMAMP------PYHGA-TFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIEQVAYFX  171 (309)
T ss_dssp             CSEEEECC------SCBTT-TBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHSTTEEEEE
T ss_pred             CCEEEEcC------CCCcc-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence            99775532      33100 001345666666542           2222 33  44455666665555566655

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=89.81  E-value=4.8  Score=40.65  Aligned_cols=139  Identities=14%  Similarity=0.048  Sum_probs=85.1

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-C-CcEEEEEEeeecCC-CCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S-IPVRGYVSCVVGCP-VEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G-~~v~~~v~~~fg~p-d~~r~  274 (426)
                      ++|.++|.|.|.|-..-        |+.  .+...+|-+.++=.+.+.++++.+|+. | ..|.+-++...... .....
T Consensus       178 ~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~  257 (402)
T 2hsa_B          178 LNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN  257 (402)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSC
T ss_pred             HHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCC
Confidence            45667899999887642        232  223346777777777777888777764 3 25555554310000 01234


Q ss_pred             CHHHHHHHHHHHHhCC------CCEEEEcCCC--C-CCCH-------HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHH
Q 014369          275 PPSKVAYVAKELHDMG------CFEISLGDTI--G-VGTP-------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  338 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~G------ad~I~l~DT~--G-~~~P-------~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~AN  338 (426)
                      +.+...++++.+.++|      ++.|.+..-.  + ...|       ..-.++++.+++.++..-|..-   ++  -...
T Consensus       258 ~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G---~i--~~~~  332 (402)
T 2hsa_B          258 PLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSG---GY--TREL  332 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEES---SC--CHHH
T ss_pred             CHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeC---CC--CHHH
Confidence            5678899999999999      9998884321  0 0112       1235678889988865323332   22  2467


Q ss_pred             HHHHHHcC-CCEEe
Q 014369          339 ILISLQMG-ISTVD  351 (426)
Q Consensus       339 aLaAl~aG-a~~VD  351 (426)
                      +..+++.| ||.|-
T Consensus       333 a~~~l~~g~aD~V~  346 (402)
T 2hsa_B          333 GIEAVAQGDADLVS  346 (402)
T ss_dssp             HHHHHHTTSCSEEE
T ss_pred             HHHHHHCCCCceee
Confidence            78889988 88773

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=89.79  E-value=3.8  Score=40.38  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc--CCCCCCC------HHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLG--DTIGVGT------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~--DT~G~~~------P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      .+.+...++++.|.++|++.|-+.  |-.+..+      .....++++.+++..|..+|.+.+.-.+|. ....-.|.++
T Consensus        27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~-~~~i~~a~~a  105 (345)
T 1nvm_A           27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGS-VHDLKNAYQA  105 (345)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBC-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCccc-HHHHHHHHhC
Confidence            445555556666666666655553  1111111      012233455555545544555443111221 2344455566


Q ss_pred             CCCEEee
Q 014369          346 GISTVDC  352 (426)
Q Consensus       346 Ga~~VD~  352 (426)
                      |++.|..
T Consensus       106 Gvd~v~I  112 (345)
T 1nvm_A          106 GARVVRV  112 (345)
T ss_dssp             TCCEEEE
T ss_pred             CcCEEEE
Confidence            6665544

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=89.78  E-value=6.1  Score=37.85  Aligned_cols=104  Identities=17%  Similarity=0.265  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-------------------CC
Q 014369          243 RYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------------GV  302 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-------------------G~  302 (426)
                      ++.+..+.+|+.|-+ +..|++       ++.-+++...++++.+.+.|+|.|-|.=-.                   .-
T Consensus         6 ri~~~f~~~~~~~~~ali~yi~-------aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G   78 (271)
T 3nav_A            6 RYQALFQRLSAAQQGAFVPFVT-------IGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAK   78 (271)
T ss_dssp             HHHHHHHHHHHTTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe-------CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            455666666776654 344554       233467889999999999999977665211                   12


Q ss_pred             CCHHHHHHHHHHHHHhcCCceEEEEeCCC--cCcHHH-HHHHHHHcCCCEEeec
Q 014369          303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDT--YGQSLP-NILISLQMGISTVDCS  353 (426)
Q Consensus       303 ~~P~~v~~li~~l~~~~p~~~i~~H~HNd--~GlA~A-NaLaAl~aGa~~VD~S  353 (426)
                      .+..++-++++.+|+..+.+||.+-..-|  +..++. -+-.+.++|++.+=..
T Consensus        79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip  132 (271)
T 3nav_A           79 TTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA  132 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence            34456778999999876556777755433  333444 4556679999986554

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}

Probab=89.63  E-value=3.4  Score=39.80  Aligned_cols=194  Identities=13%  Similarity=0.074  Sum_probs=95.0

Q ss_pred             HHHHHHHhC-CCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC---------------C-----------h
Q 014369          152 ELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP---------------N-----------L  204 (426)
Q Consensus       152 ~I~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---------------~-----------~  204 (426)
                      +.++.+.++ |++.||+.++...     -.+.+++.+.++. .++++.++.+               +           .
T Consensus        37 e~l~~aa~~~G~~~VEl~~~~~~-----~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~  110 (333)
T 3ktc_A           37 DQINAAKEVGELSYVDLPYPFTP-----GVTLSEVKDALKD-AGLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMH  110 (333)
T ss_dssp             HHHHHHHHHSSEEEEEEEESCST-----TCCHHHHHHHHHH-HTCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEecCCCcc-----hhHHHHHHHHHHH-cCCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHHH
Confidence            445555677 9999999754321     1355666666553 3455554432               1           0


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC--CCCCCHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--EGAIPPSKVAYV  282 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd--~~r~~~~~l~~~  282 (426)
                      +.++.|.+.|++.|.++.+....  ......+.++.++++.+.++.+-+..-.+.+.|...-..+.  ..-.+++.+..+
T Consensus       111 ~~i~~A~~LGa~~vv~~~g~~g~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~lE~~p~~~~~~~~~~~~~~~~~l  188 (333)
T 3ktc_A          111 ESAGIVRELGANYVKVWPGQDGW--DYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAIEYKPREPRVKMTWDSAARTLLG  188 (333)
T ss_dssp             HHHHHHHHHTCSEEEECCTTCEE--SSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEECCSCSSSSEESSCSHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEECCCCCCc--CCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCCCCccccCCCHHHHHHH
Confidence            13556677899999876541100  00112345555555554443333322222323332110111  112356666666


Q ss_pred             HHHHHhCCCC-EEEEcCCCCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          283 AKELHDMGCF-EISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       283 ~~~l~~~Gad-~I~l~DT~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      ++.+   +.+ .-.+-||.=.    ..|.   +.++.++. .+. -..+|++|..|            +.+ -|      
T Consensus       189 l~~v---~~~~vgl~lD~~H~~~~g~~~~---~~~~~~~~-~~~-i~~vH~~D~~~------------~~d-~~------  241 (333)
T 3ktc_A          189 IEDI---GLDNVGVLLDFGHALYGGESPA---DSAQLIID-RGR-LFGMDVNDNLR------------GWD-DD------  241 (333)
T ss_dssp             HHHH---TCTTEEEEEEHHHHHHTTCCHH---HHHHHHHH-TTC-EEEEEBCBCCS------------SSC-CC------
T ss_pred             HHHc---CCcceEEEEecCcHhhhcCCHH---HHHHHHHh-CCC-EEEEEeCCCCC------------CCC-CC------
Confidence            5543   433 3334455211    1232   23333221 232 24889998654            111 00      


Q ss_pred             CCCCCCCCCCCc-ccHHHHHHHHHhCCCC
Q 014369          358 GGCPYAKGASGN-VATEDVVYMLSGLGVE  385 (426)
Q Consensus       358 GecP~a~graGN-a~lEevv~~L~~lG~~  385 (426)
                          ..+| .|+ .++..++..|+..|++
T Consensus       242 ----~~~G-~G~~~d~~~i~~~L~~~gy~  265 (333)
T 3ktc_A          242 ----LVVG-TVHMTEIFEFFYVLKINNWQ  265 (333)
T ss_dssp             ----BCTT-SSCHHHHHHHHHHHHHTTCC
T ss_pred             ----cCCC-CCCHHHHHHHHHHHHHcCCC
Confidence                1122 688 6999999999987765

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=89.58  E-value=7.3  Score=37.59  Aligned_cols=40  Identities=13%  Similarity=-0.125  Sum_probs=20.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+
T Consensus        92 ai~la~~a~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~  131 (301)
T 3m5v_A           92 AVGLAKFAKEHGADGIL-----SVAPYYNKPTQQGLYEHYKAIAQ  131 (301)
T ss_dssp             HHHHHHHHHHTTCSEEE-----EECCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHH
Confidence            34555566667765431     11344344556666665555544

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=89.52  E-value=5.9  Score=38.33  Aligned_cols=14  Identities=7%  Similarity=-0.097  Sum_probs=8.8

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|...+.++.+.+
T Consensus       216 ~an~~P~~~~~l~~  229 (303)
T 2wkj_A          216 TYNIMGWRYQGIVK  229 (303)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            55666677666554

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=89.48  E-value=13  Score=34.22  Aligned_cols=144  Identities=15%  Similarity=0.100  Sum_probs=75.6

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--cCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~--~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      ++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+  .|+++.  +....+.+..--.+++.+.++++
T Consensus        95 i~~A~~lG~~~v~~~~g~~-------~~~~~~~~~~~~~~~l~~l~~~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~  165 (287)
T 2x7v_A           95 VEICRKLGIRYLNIHPGSH-------LGTGEEEGIDRIVRGLNEVLNNTEGVVIL--LENVSQKGGNIGYKLEQLKKIRD  165 (287)
T ss_dssp             HHHHHHHTCCEEEECCEEC-------TTSCHHHHHHHHHHHHHHHHTTCCSCEEE--EECCCCCTTEECSSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEecCCC-------CCCCHHHHHHHHHHHHHHHHcccCCCEEE--EeCCCCCCCccCCCHHHHHHHHH
Confidence            5666778999888753311       122566677766666555433  455433  43221110000135666666665


Q ss_pred             HHHhCCC-CEE-EEcCC-----CCC--CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          285 ELHDMGC-FEI-SLGDT-----IGV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       285 ~l~~~Ga-d~I-~l~DT-----~G~--~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      .   .+- +.+ ..-||     .|.  ..|..+.++++.+.+.++ .--..+|+||..+--          |-. -|- -
T Consensus       166 ~---~~~~~~vg~~~D~~h~~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~vH~~D~~~~~----------~~~-~~~-~  230 (287)
T 2x7v_A          166 L---VDQRDRVAITYDTCHGFDSGYDITKKEGVEALLNEIESLFGLERLKMIHLNDSKYPL----------GAA-KDR-H  230 (287)
T ss_dssp             H---CSCGGGEEEEEEHHHHHHTTCCTTSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CCC-E
T ss_pred             h---cCCCCCeEEEEEhhhHHHcCCCCCchHHHHHHHHHHHHhcCccceeEEEEecCCCcc----------CCc-ccc-c
Confidence            4   332 222 23354     221  234567777777766553 334778999876520          110 000 0


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                      ..+       | .|..+.+.++..|+..
T Consensus       231 ~~~-------G-~G~id~~~~~~~L~~~  250 (287)
T 2x7v_A          231 ERI-------G-SGFIGEEGFAVFFSFK  250 (287)
T ss_dssp             ECT-------T-SSSSHHHHHHHHHTCH
T ss_pred             CCC-------C-CCCcCHHHHHHHHhcc
Confidence            112       2 5889999999999853

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=89.38  E-value=4.4  Score=40.65  Aligned_cols=135  Identities=13%  Similarity=0.047  Sum_probs=83.7

Q ss_pred             HHHH-HcCCCEEEEeccC--------ChHHH---hhhcCC-CHHHHHHHHHHHHHHHHhc-CC-cEEEEEEee-ecCCCC
Q 014369          208 EAAI-AAGAKEVAIFASA--------SEAFS---KSNINC-SIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV-VGCPVE  271 (426)
Q Consensus       208 ~~a~-~~Gv~~V~i~~~~--------Sd~~~---~~~~~~-s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~-fg~pd~  271 (426)
                      +.|. ++|.|.|.|...-        |+..+   ...+|- +.++-.+.+.++++.+|+. |- .|.+-|+.. +.....
T Consensus       181 ~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~  260 (379)
T 3aty_A          181 KNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMI  260 (379)
T ss_dssp             HHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCC
T ss_pred             HHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCC
Confidence            4667 8999999887542        22211   234566 7777777777888877764 42 344434321 000012


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  348 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~  348 (426)
                      ...+.+...++++.+.++|++.|.+....  +...|.   + ++.+++.++. +|..=.-  +  -...+..+++.| ||
T Consensus       261 ~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~---~-~~~ir~~~~i-Pvi~~G~--i--t~~~a~~~l~~g~aD  331 (379)
T 3aty_A          261 DSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGD---V-VAWVRGSYSG-VKISNLR--Y--DFEEADQQIREGKVD  331 (379)
T ss_dssp             CSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCC---H-HHHHHTTCCS-CEEEESS--C--CHHHHHHHHHTTSCS
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccH---H-HHHHHHHCCC-cEEEECC--C--CHHHHHHHHHcCCCe
Confidence            34567888999999999999999887521  111233   4 7788887764 3433221  2  367778889998 88


Q ss_pred             EEe
Q 014369          349 TVD  351 (426)
Q Consensus       349 ~VD  351 (426)
                      .|-
T Consensus       332 ~V~  334 (379)
T 3aty_A          332 AVA  334 (379)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=89.33  E-value=1.4  Score=42.95  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEc-CCCCC-CCHHHHHHHHHHHHH--hc
Q 014369          245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLG-DTIGV-GTPGTVVPMLEAVMA--VV  319 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~-DT~G~-~~P~~v~~li~~l~~--~~  319 (426)
                      +++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+...| .+. .+..+ .-...+..++..+.+  ..
T Consensus        10 ~~ll~~A~~~~yAV~A-----fNv-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~   79 (288)
T 3q94_A           10 KEMLNKALEGKYAVGQ-----FNM-----NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI   79 (288)
T ss_dssp             HHHHHHHHHHTCCEEE-----EEC-----CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCcEEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCC
Confidence            5788899999987753     322     357899999999999998744 343 23333 234557778877776  44


Q ss_pred             CCceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 014369          320 PVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  357 (426)
Q Consensus       320 p~~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  357 (426)
                      + +|+.+|.  |.|....-...|+++|.+  .+|+|-..+
T Consensus        80 ~-VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~  116 (288)
T 3q94_A           80 T-VPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHHPF  116 (288)
T ss_dssp             C-SCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCH
T ss_pred             C-CcEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCH
Confidence            4 4677765  566678899999999998  679887644

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=89.31  E-value=4.8  Score=39.17  Aligned_cols=98  Identities=9%  Similarity=0.035  Sum_probs=51.2

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+++.- .++-|.+.++.        .+    .+...+.++.|++.|.....     .-.|+ ...+.+.+.+..+.+
T Consensus        67 ~~~~v~~~-grvpViaGvg~--------~~----t~~ai~la~~A~~~Gadavl-----v~~P~-~~~s~~~l~~~f~~v  127 (313)
T 3dz1_A           67 ATRFIKRA-KSMQVIVGVSA--------PG----FAAMRRLARLSMDAGAAGVM-----IAPPP-SLRTDEQITTYFRQA  127 (313)
T ss_dssp             HHHHHHHC-TTSEEEEECCC--------SS----HHHHHHHHHHHHHHTCSEEE-----ECCCT-TCCSHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCcEEEecCC--------CC----HHHHHHHHHHHHHcCCCEEE-----ECCCC-CCCCHHHHHHHHHHH
Confidence            45555544 45555555433        12    33344566677788876431     12455 445667777766665


Q ss_pred             HhC-C--CCE--EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 014369          287 HDM-G--CFE--ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  327 (426)
Q Consensus       287 ~~~-G--ad~--I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H  327 (426)
                      .++ +  ...  -+++...|+-.+.   +++..|.+.+|.+ +++-
T Consensus       128 a~a~~~~lPiilYn~P~~tg~~l~~---~~~~~La~~~pnI-vgiK  169 (313)
T 3dz1_A          128 TEAIGDDVPWVLQDYPLTLSVVMTP---KVIRQIVMDSASC-VMLK  169 (313)
T ss_dssp             HHHHCTTSCEEEEECHHHHCCCCCH---HHHHHHHHHCSSE-EEEE
T ss_pred             HHhCCCCCcEEEEeCccccCcCCCH---HHHHHHHHhCCCE-EEEE
Confidence            543 4  443  3345555654332   2444555556763 6665

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=89.31  E-value=2.7  Score=43.87  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      ++..+.++.|.++|++.|++.... +.    .....+.++.++ ..++..+.+ -+.+.++.+.+.++|++.|.+.....
T Consensus       255 ~d~~era~aLveaGvd~I~Id~a~-g~----~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~g  329 (511)
T 3usb_A          255 ADAMTRIDALVKASVDAIVLDTAH-GH----SQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPG  329 (511)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCS
T ss_pred             cchHHHHHHHHhhccceEEecccc-cc----hhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCc
Confidence            344677889999999999998532 11    112234444444 335555443 34577889999999999998743221


Q ss_pred             hHH---HhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          226 EAF---SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       226 d~~---~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      .++   ....++..   .+..+.++.+.+++.+++|.+         +.+-.++..+.+.    .++||+.+.+.=
T Consensus       330 si~~~~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~di~ka----la~GA~~V~vGs  389 (511)
T 3usb_A          330 SICTTRVVAGVGVP---QLTAVYDCATEARKHGIPVIA---------DGGIKYSGDMVKA----LAAGAHVVMLGS  389 (511)
T ss_dssp             TTCCHHHHHCCCCC---HHHHHHHHHHHHHTTTCCEEE---------ESCCCSHHHHHHH----HHTTCSEEEEST
T ss_pred             cccccccccCCCCC---cHHHHHHHHHHHHhCCCcEEE---------eCCCCCHHHHHHH----HHhCchhheecH
Confidence            111   11112222   244455667777888888752         2344566665553    358999888764

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=89.30  E-value=6  Score=38.08  Aligned_cols=64  Identities=6%  Similarity=-0.183  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhC----CCCEE--EEcCCCCC-CCHHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDM----GCFEI--SLGDTIGV-GTPGTVVPML  312 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~----Gad~I--~l~DT~G~-~~P~~v~~li  312 (426)
                      ..+.++.|++.|.....     .-.|.-.+ .+.+.+.+..+.+.++    +...+  .++...|+ +.|+.+.+|.
T Consensus        87 ai~la~~A~~~Gadavl-----v~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La  158 (294)
T 3b4u_A           87 AADQSAEALNAGARNIL-----LAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK  158 (294)
T ss_dssp             HHHHHHHHHHTTCSEEE-----ECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEE-----EcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence            34556667777766431     12344445 5666666666555443    44332  34455564 5555555553

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=89.23  E-value=9.5  Score=38.03  Aligned_cols=132  Identities=11%  Similarity=0.093  Sum_probs=80.5

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhh----------hcCCCHHHHHHHHHHHHHHHH-hcCCcEEEEEEeeecCCCCCCCCH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKS----------NINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~----------~~~~s~~e~l~~~~~~v~~Ak-~~G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      +.+.+-|+..+-+++... .|...          ..|.+.++.++.+.+.++.++ +.|+.++.-+++.       |..+
T Consensus        85 ed~a~dgV~Y~Eir~~P~-~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~~~gi~~~lI~~~~-------R~~~  156 (367)
T 3iar_A           85 EMKAKEGVVYVEVRYSPH-LLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCM-------RHQP  156 (367)
T ss_dssp             HHHHTTTEEEEEEEECGG-GGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE-------TTCG
T ss_pred             HHHHHcCCEEEEEEecHH-HhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEeC-------CCCC
Confidence            444556877776665321 12211          127899999999988888775 4688887544432       1112


Q ss_pred             HHHHHHHHHHHhC---CCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH-cCCCE
Q 014369          277 SKVAYVAKELHDM---GCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGIST  349 (426)
Q Consensus       277 ~~l~~~~~~l~~~---Gad~I~l~DT~G~~~P---~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~-aGa~~  349 (426)
                      +...+.++.+.++   |+-.|-|+---....|   ..+.+.++..++.  +.++.+|+..+.+.  .+...|+. .|+++
T Consensus       157 ~~a~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~~f~~~f~~A~~~--gl~~~~HagE~~~~--~~i~~al~~lg~~R  232 (367)
T 3iar_A          157 NWSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKS--GIHRTVHAGEVGSA--EVVKEAVDILKTER  232 (367)
T ss_dssp             GGHHHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCHHHHHHHHHHHHH--TCEEEEEESSSSCH--HHHHHHHHTSCCSE
T ss_pred             HHHHHHHHHHHhhCCCCEEEEcCCCcccCCCcchHHHHHHHHHHHHHc--CCeeEEecCCcCCh--HHHHHHHHccCCce
Confidence            2233444444443   4555555533334455   5777777766553  35799999887663  57788895 89998


Q ss_pred             Ee
Q 014369          350 VD  351 (426)
Q Consensus       350 VD  351 (426)
                      |+
T Consensus       233 Ig  234 (367)
T 3iar_A          233 LG  234 (367)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=89.16  E-value=3.1  Score=40.78  Aligned_cols=93  Identities=11%  Similarity=0.090  Sum_probs=63.5

Q ss_pred             HHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCce
Q 014369          246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK  323 (426)
Q Consensus       246 ~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G--ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~  323 (426)
                      +.++.+++.|+.+.+.    +|      .+++.+ +.++.+.++|  ++.|.+ |+ +...|....+.|+.+++.++..+
T Consensus        85 ~~i~~~~~~g~~v~v~----~g------~~~~~~-~~a~~~~~~g~~~~~i~i-~~-~~G~~~~~~~~i~~lr~~~~~~~  151 (336)
T 1ypf_A           85 SFIRDMQSRGLIASIS----VG------VKEDEY-EFVQQLAAEHLTPEYITI-DI-AHGHSNAVINMIQHIKKHLPESF  151 (336)
T ss_dssp             HHHHHHHHTTCCCEEE----EC------CSHHHH-HHHHHHHHTTCCCSEEEE-EC-SSCCSHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHhcCCeEEEe----CC------CCHHHH-HHHHHHHhcCCCCCEEEE-EC-CCCCcHHHHHHHHHHHHhCCCCE
Confidence            4456667778765543    22      124433 4577888999  888876 33 22378888999999999987543


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          324 LAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       324 i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      +. ..   ..+....+..|+++||+.|.++-.
T Consensus       152 vi-~G---~v~s~e~A~~a~~aGad~Ivvs~h  179 (336)
T 1ypf_A          152 VI-AG---NVGTPEAVRELENAGADATKVGIG  179 (336)
T ss_dssp             EE-EE---EECSHHHHHHHHHHTCSEEEECSS
T ss_pred             EE-EC---CcCCHHHHHHHHHcCCCEEEEecC
Confidence            43 32   224568899999999999998654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=89.15  E-value=3.2  Score=41.42  Aligned_cols=126  Identities=13%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccCCh---
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASASE---  226 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~Sd---  226 (426)
                      .+.++.|.++|++.|++......   |  ....+.++.+++.-+..+.+ -+.+.+.++.+.++|+|.|.+......   
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~---~--~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~  181 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGH---S--LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICT  181 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCS---B--HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCC
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCC---c--HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCC
Confidence            67788899999999998643210   1  01123333344322555543 456788899999999999998432111   


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       227 ~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .......+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.++    .++||+.+.+.
T Consensus       182 tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIA---------~GGI~~~~di~ka----la~GAd~V~vG  236 (361)
T 3khj_A          182 TRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIGKA----LAVGASSVMIG  236 (361)
T ss_dssp             HHHHTCBCCC---HHHHHHHHHHHHHHHTCCEEE---------ESCCCSHHHHHHH----HHHTCSEEEES
T ss_pred             cccccCCCCC---cHHHHHHHHHHHhhcCCeEEE---------ECCCCCHHHHHHH----HHcCCCEEEEC
Confidence            1111112222   234455555666667887752         2343456665543    34799988776

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=89.14  E-value=12  Score=36.29  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             CcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-cCCcEEEEEEeeecCCCCC-
Q 014369          195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG-  272 (426)
Q Consensus       195 ~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~-~G~~v~~~v~~~fg~pd~~-  272 (426)
                      ..+-+.+-+.+++..|.+.|+++|.+......      =|.|+-  .    .+++.+++ ..++|.  ++.   -|-.+ 
T Consensus        40 ~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~------GGlTPS--~----g~i~~a~~~~~ipV~--vMI---RPRgGd  102 (287)
T 3iwp_A           40 FLMEVCVDSVESAVNAERGGADRIELCSGLSE------GGTTPS--M----GVLQVVKQSVQIPVF--VMI---RPRGGD  102 (287)
T ss_dssp             SEEEEEESSHHHHHHHHHHTCSEEEECBCGGG------TCBCCC--H----HHHHHHHTTCCSCEE--EEC---CSSSSC
T ss_pred             ceEEEEeCCHHHHHHHHHhCCCEEEECCCCCC------CCCCCC--H----HHHHHHHHhcCCCeE--EEE---ecCCCC
Confidence            44555667899999999999999999854211      122221  1    22233333 356655  442   13322 


Q ss_pred             -CCCHHHH---HHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc---HHHHHHHHH
Q 014369          273 -AIPPSKV---AYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ---SLPNILISL  343 (426)
Q Consensus       273 -r~~~~~l---~~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl---A~ANaLaAl  343 (426)
                       -++.+++   .+-++.+.++|+|.|.+.  +.-|......+.+|++...   + ..+.||--  +-+   .....-..+
T Consensus       103 F~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~---~-l~vTFHRA--FD~~~d~~~Ale~Li  176 (287)
T 3iwp_A          103 FLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICR---P-LPVTFHRA--FDMVHDPMAALETLL  176 (287)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT---T-SCEEECGG--GGGCSCHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC---C-CcEEEECc--hhccCCHHHHHHHHH
Confidence             3454444   456778889999999887  3557777788888887643   2 34666654  333   334444444


Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCC--CCCcChhhHHHHHH
Q 014369          344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGV--ETNVDLRKLMLAGD  398 (426)
Q Consensus       344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~--~~~iDl~~L~~la~  398 (426)
                      +.|+++|=+|=.   . |-|  -.|..-+-+++..... .-+  --||+.+.+.++.+
T Consensus       177 ~lGvdrILTSG~---~-~~a--~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~  228 (287)
T 3iwp_A          177 TLGFERVLTSGC---D-SSA--LEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILE  228 (287)
T ss_dssp             HHTCSEEEECTT---S-SST--TTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHH
T ss_pred             HcCCCEEECCCC---C-CCh--HHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH
Confidence            569998877321   1 111  1233334444433221 111  24688888877654

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=89.08  E-value=0.44  Score=44.62  Aligned_cols=97  Identities=10%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCEE--EEcCCCCCCCHHH--HHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          274 IPPSKVAYVAKELHDMGCFEI--SLGDTIGVGTPGT--VVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I--~l~DT~G~~~P~~--v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      .|...+.+.++.+.++|+|.+  -+.|  |.+.|+-  -.++++.+|+.+ +..++.+|.|-+.--.  -.-.+.++||+
T Consensus        14 ~D~~~l~~~i~~l~~~g~d~~h~DVmD--g~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~--~i~~~~~aGad   89 (228)
T 3ovp_A           14 SDLANLGAECLRMLDSGADYLHLDVMD--GHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQ--WVKPMAVAGAN   89 (228)
T ss_dssp             SCGGGHHHHHHHHHHTTCSCEEEEEEB--SSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGG--GHHHHHHHTCS
T ss_pred             CCchhHHHHHHHHHHcCCCEEEEEecC--CCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHH--HHHHHHHcCCC
Confidence            466778888999999999954  4555  6654422  235788888886 7678999998653222  23456789999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          349 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       349 ~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                      +|..-.    |       ++. .+..++..++.+|.+.
T Consensus        90 ~itvH~----E-------a~~-~~~~~i~~i~~~G~k~  115 (228)
T 3ovp_A           90 QYTFHL----E-------ATE-NPGALIKDIRENGMKV  115 (228)
T ss_dssp             EEEEEG----G-------GCS-CHHHHHHHHHHTTCEE
T ss_pred             EEEEcc----C-------Cch-hHHHHHHHHHHcCCCE
Confidence            887632    3       222 4566677777666543

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=89.07  E-value=6.5  Score=38.09  Aligned_cols=155  Identities=14%  Similarity=0.097  Sum_probs=96.7

Q ss_pred             HHHHHHhCCCCeEEEecCCCCCc---c------ccccCHHHHHHHhHhc--CCCcEEEEeCChhhHHHHHHcCCCEEEEe
Q 014369          153 LIRRLVSSGLPVVEATSFVSPKW---V------PQLADARDVMEAVRDL--EGARLPVLTPNLKGFEAAIAAGAKEVAIF  221 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~~s~~~---~------p~~~D~~~v~~~i~~~--~~~~l~~l~~~~~di~~a~~~Gv~~V~i~  221 (426)
                      +.+.|.++|+.-+ +=||...-+   +      ..| ...+..+.++..  .+..-.+.+.+.+..++..++|.|.|.+.
T Consensus       113 ~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm-~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h  190 (286)
T 2p10_A          113 FLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGM-SYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCH  190 (286)
T ss_dssp             HHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHhCCceE-EECCCcccccchhhhhHhhcCC-CHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEEC
Confidence            3499999999999 766521000   0      011 233444555432  45555566788999999999999999888


Q ss_pred             ccCChH-HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369          222 ASASEA-FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       222 ~~~Sd~-~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                      .+...- ..-.....|.+++.+.+.++++.+++..-.|.+ ++.  |.|   -.+|+++.++.+.  -.|++-+..+-++
T Consensus       191 ~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdviv-Lc~--gGp---IstpeDv~~~l~~--t~G~~G~~gASsi  262 (286)
T 2p10_A          191 MGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIII-LSH--GGP---IANPEDARFILDS--CQGCHGFYGASSM  262 (286)
T ss_dssp             CSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEE-EEE--STT---CCSHHHHHHHHHH--CTTCCEEEESHHH
T ss_pred             CCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEE-Eec--CCC---CCCHHHHHHHHhc--CCCccEEEeehhh
Confidence            774321 111233457889889999999999998777642 332  223   3468887766532  1278888888777


Q ss_pred             CCCCHHH-HHHHHHHHHH
Q 014369          301 GVGTPGT-VVPMLEAVMA  317 (426)
Q Consensus       301 G~~~P~~-v~~li~~l~~  317 (426)
                      -.+.|++ +.++++.++.
T Consensus       263 er~p~e~ai~~~~~~fk~  280 (286)
T 2p10_A          263 ERLPAEEAIRSQTLAFKA  280 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHHHHh
Confidence            6665543 4566666654

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=89.05  E-value=1.4  Score=42.65  Aligned_cols=128  Identities=12%  Similarity=0.071  Sum_probs=92.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC--CceEEEEe-CCCcCcHHHHHHHHHH
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP--VEKLAVHL-HDTYGQSLPNILISLQ  344 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p--~~~i~~H~-HNd~GlA~ANaLaAl~  344 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+...  ..++-+|. +|+.--++..+..|-+
T Consensus        22 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~  101 (301)
T 3m5v_A           22 NGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKE  101 (301)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999   4678888999999888764  36777765 6888899999999999


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-----------CCCC--C--CcChhhHHHHHHHHHHHhCCCC
Q 014369          345 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-----------LGVE--T--NVDLRKLMLAGDFINKHLGRPS  408 (426)
Q Consensus       345 aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-----------lG~~--~--~iDl~~L~~la~~v~~~~g~~~  408 (426)
                      +||+.+=..-      ||-..    ++-|+++..++.           |++.  +  .+..+.+.++++.+.++.|++-
T Consensus       102 ~Gadavlv~~------P~y~~----~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKd  170 (301)
T 3m5v_A          102 HGADGILSVA------PYYNK----PTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKE  170 (301)
T ss_dssp             TTCSEEEEEC------CCSSC----CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEE
T ss_pred             cCCCEEEEcC------CCCCC----CCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEe
Confidence            9999775543      32211    344666666652           2221  2  3455566777654345555543

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=89.04  E-value=9.1  Score=34.83  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      +.++.+.+.|++.+++-+.-. .|.+ ++...    +    +.++..++. +..+.+.++  +       .+++   +.+
T Consensus        27 ~~i~~~~~~G~d~i~l~~~dg-~f~~-~~~~~----~----~~i~~l~~~~~~~~~v~l~--v-------nd~~---~~v   84 (230)
T 1rpx_A           27 EQVKAIEQAGCDWIHVDVMDG-RFVP-NITIG----P----LVVDSLRPITDLPLDVHLM--I-------VEPD---QRV   84 (230)
T ss_dssp             HHHHHHHHTTCCCEEEEEEBS-SSSS-CBCCC----H----HHHHHHGGGCCSCEEEEEE--S-------SSHH---HHH
T ss_pred             HHHHHHHHCCCCEEEEeeccC-Cccc-ccccC----H----HHHHHHHhccCCcEEEEEE--e-------cCHH---HHH
Confidence            567888889999888853100 0000 11111    2    333344444 555555443  1       1243   355


Q ss_pred             HHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHHHHHhcCCceEEEEe--CCCcCcHHHHHHHHHHcCCCEE--eecccCC
Q 014369          284 KELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYGQSLPNILISLQMGISTV--DCSVAGL  357 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT--~G~~~P~~v~~li~~l~~~~p~~~i~~H~--HNd~GlA~ANaLaAl~aGa~~V--D~Sv~Gl  357 (426)
                      +.+.++|+|.|.+.+.  .+ -.   ..++++.+++. + ..+++=+  |.+.     ..+.++..|+++|  ++.-.|.
T Consensus        85 ~~~~~~Gad~v~vh~~~~~~-~~---~~~~~~~~~~~-g-~~ig~~~~p~t~~-----e~~~~~~~~~d~vl~~~~~pg~  153 (230)
T 1rpx_A           85 PDFIKAGADIVSVHCEQSST-IH---LHRTINQIKSL-G-AKAGVVLNPGTPL-----TAIEYVLDAVDLVLIMSVNPGF  153 (230)
T ss_dssp             HHHHHTTCSEEEEECSTTTC-SC---HHHHHHHHHHT-T-SEEEEEECTTCCG-----GGGTTTTTTCSEEEEESSCTTC
T ss_pred             HHHHHcCCCEEEEEecCccc-hh---HHHHHHHHHHc-C-CcEEEEeCCCCCH-----HHHHHHHhhCCEEEEEEEcCCC
Confidence            6667899999999987  54 22   34556666553 2 2344444  4332     2244556789987  3333455


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHh--------C--CCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccchhhhhh
Q 014369          358 GGCPYAKGASGNVATEDVVYMLSG--------L--GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAAD  422 (426)
Q Consensus       358 GecP~a~graGNa~lEevv~~L~~--------l--G~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~~vf~h  422 (426)
                      ++..|      .....+.+..++.        .  .+.-||+.+.+.++.+.         ...--++|..+|..
T Consensus       154 ~g~~~------~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~a---------Gad~vvvgSaI~~a  213 (230)
T 1rpx_A          154 GGQSF------IESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEA---------GANALVAGSAVFGA  213 (230)
T ss_dssp             SSCCC------CTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHH---------TCCEEEESHHHHTS
T ss_pred             CCccc------cHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHc---------CCCEEEEChhhhCC
Confidence            54111      2222222222221        1  23457887766654332         34556667776643

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=89.02  E-value=11  Score=36.34  Aligned_cols=14  Identities=21%  Similarity=0.126  Sum_probs=8.4

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|..-+.++...+
T Consensus       212 ~an~~P~~~~~l~~  225 (297)
T 3flu_A          212 AANAAPKLFADMCR  225 (297)
T ss_dssp             GGGTCHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHH
Confidence            45666666665554

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=88.98  E-value=1.2  Score=42.20  Aligned_cols=117  Identities=20%  Similarity=0.345  Sum_probs=73.8

Q ss_pred             HHHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE
Q 014369          182 ARDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  258 (426)
Q Consensus       182 ~~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v  258 (426)
                      .+.+...++++  .+++++.+. |..+.++.|.+.|++.|-++..   .+....-....+..|+++.+++++|+++|+.|
T Consensus       113 ~~~l~~~i~~L~~~GIrVSLFIDpd~~qi~aA~~~GA~~IELhTG---~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~V  189 (243)
T 1m5w_A          113 RDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTG---CYADAKTDAEQAQELARIAKAATFAASLGLKV  189 (243)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECH---HHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence            34444555533  467777776 6889999999999999999864   12222101123467999999999999999998


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEc-----CCCCCCCHHHHHHHHHHH
Q 014369          259 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLG-----DTIGVGTPGTVVPMLEAV  315 (426)
Q Consensus       259 ~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~-----DT~G~~~P~~v~~li~~l  315 (426)
                      .+      |   ++ .+.+.+..++    .. +..+++|.     +.+=++.+..|+++.+.+
T Consensus       190 nA------G---Hg-L~y~Nv~~ia----~ip~i~ElnIGHaiia~Al~~Gl~~aV~~m~~~~  238 (243)
T 1m5w_A          190 NA------G---HG-LTYHNVKAIA----AIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLM  238 (243)
T ss_dssp             EE------E---SS-CCTTTHHHHH----TCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ec------C---CC-CCHHHHHHHh----hCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            73      1   22 3334444432    32 45677663     444455566666665555

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=88.94  E-value=9.8  Score=37.84  Aligned_cols=68  Identities=15%  Similarity=0.112  Sum_probs=49.2

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      .+.++.+.++|+|.|.|- + +...|..+.+.++.+++.++ .++.+..=    ....-+..++++||+.|.+++
T Consensus       107 ~e~a~~l~eaGad~I~ld-~-a~G~~~~~~~~i~~i~~~~~-~~Vivg~v----~t~e~A~~l~~aGaD~I~VG~  174 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLD-S-AHGHSLNIIRTLKEIKSKMN-IDVIVGNV----VTEEATKELIENGADGIKVGI  174 (361)
T ss_dssp             HHHHHHHHHTTCSEEEEC-C-SCCSBHHHHHHHHHHHHHCC-CEEEEEEE----CSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHHHcCcCeEEEe-C-CCCCcHHHHHHHHHHHHhcC-CcEEEccC----CCHHHHHHHHHcCcCEEEEec
Confidence            566788889999988763 2 23467888899999999874 35554211    234567888999999999844

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=88.94  E-value=4.2  Score=39.85  Aligned_cols=161  Identities=13%  Similarity=0.057  Sum_probs=88.2

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCC------CC-C
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------GA-I  274 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~------~r-~  274 (426)
                      .++++.+.++|+..||+-+-+.+.    . +.   ..++.+.++++.||++|++|...+-+.  +..|-.      -. .
T Consensus        30 ~~~~~ilk~~G~n~vRlri~v~P~----~-g~---~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~  101 (334)
T 1fob_A           30 QALETILADAGINSIRQRVWVNPS----D-GS---YDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTT  101 (334)
T ss_dssp             CCHHHHHHHHTCCEEEEEECSCCT----T-CT---TCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSS
T ss_pred             chHHHHHHHcCCCEEEEEEEECCC----C-Cc---cCHHHHHHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccC
Confidence            356788889999988885443331    0 10   126778899999999999988665321  111210      00 1


Q ss_pred             CH--------HHHHHHHHHHHhCC--CCEEEEcC--CCCCC-------CHHHHHHH----HHHHHHhc--CCceEEEEeC
Q 014369          275 PP--------SKVAYVAKELHDMG--CFEISLGD--TIGVG-------TPGTVVPM----LEAVMAVV--PVEKLAVHLH  329 (426)
Q Consensus       275 ~~--------~~l~~~~~~l~~~G--ad~I~l~D--T~G~~-------~P~~v~~l----i~~l~~~~--p~~~i~~H~H  329 (426)
                      +.        ++..++++.+.+.|  ++.+.+..  +.|.+       ....+.++    ++++|+..  |..++.+|+.
T Consensus       102 ~~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~v~~h~~  181 (334)
T 1fob_A          102 DLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLD  181 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEES
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCeEEEEcC
Confidence            22        12345566677766  56776554  23444       23444444    44466666  7768999998


Q ss_pred             CCcCcHHHH--HHHHHHcC------CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          330 DTYGQSLPN--ILISLQMG------ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       330 Nd~GlA~AN--aLaAl~aG------a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      +-...+.-+  ...++..|      .|+|=.+....=.        .+..+|.+...|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~g~~~~~~~DvIG~syYp~w~--------~~~~~~~l~~~l~  232 (334)
T 1fob_A          182 DGWSWDQQNYFYETVLATGELLSTDFDYFGVSYYPFYS--------ASATLASLKTSLA  232 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCSSSC--------TTCCHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHcCCCCCCCcCEEEEeCCCCcC--------CCCCHHHHHHHHH
Confidence            732211111  12334556      4666666554321        1124566666554

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A

Probab=88.92  E-value=3.2  Score=41.17  Aligned_cols=121  Identities=11%  Similarity=-0.044  Sum_probs=59.0

Q ss_pred             HHHHHHcCCCEEEEeccCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC--CCCCCCHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP--VEGAIPPSKVAYV  282 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~S--d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p--d~~r~~~~~l~~~  282 (426)
                      ++.|.+.|++.|.+..+..  +...........+...+.+.+++++|++.|..+...+...-..|  ...-.+++.+.++
T Consensus       122 i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~~~~~~~~~~~~~t~~~~~~l  201 (387)
T 1bxb_A          122 MDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAF  201 (387)
T ss_dssp             HHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHH
T ss_pred             HHHHHHhCCCEEEECCCCCCccCCccCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCccCCCHHHHHHH
Confidence            4566778999997765311  00000111223456777788888999998433343343211001  0112355555554


Q ss_pred             HHHHHhCCCCE-E-EEcCCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcC
Q 014369          283 AKELHDMGCFE-I-SLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYG  333 (426)
Q Consensus       283 ~~~l~~~Gad~-I-~l~DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~G  333 (426)
                      +   .+.+.+. + ..-|+. .+..  ..+.+.++.+.. .+- -..+|+++..+
T Consensus       202 l---~~v~~~~~vgl~lD~g-H~~~~g~d~~~~l~~~~~-~~~-i~~vHl~D~~~  250 (387)
T 1bxb_A          202 I---HTLDRPERFGLNPEFA-HETMAGLNFVHAVAQALD-AGK-LFHIDLNDQRM  250 (387)
T ss_dssp             H---TTSSSGGGEEECCBHH-HHHHTTCCHHHHHHHHHH-TTC-BCCEECCBCCS
T ss_pred             H---HHcCCccceEEEEecC-cccccCCCHHHHHHHhcc-CCc-EEEEEeCCCCC
Confidence            4   4555433 3 345652 2111  223344444442 132 36789988754

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=88.92  E-value=2  Score=43.00  Aligned_cols=100  Identities=10%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+... .+++-++. +|+..-++..+..|-++|
T Consensus        75 g~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  154 (360)
T 4dpp_A           75 GRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVG  154 (360)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999   5688888889988888764 45666655 678888889999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      |+.+=+.-      ||-.    .++-|+++..++.
T Consensus       155 adavlvv~------PyY~----k~sq~gl~~hf~~  179 (360)
T 4dpp_A          155 MHAALHIN------PYYG----KTSIEGLIAHFQS  179 (360)
T ss_dssp             CSEEEEEC------CCSS----CCCHHHHHHHHHT
T ss_pred             CCEEEEcC------CCCC----CCCHHHHHHHHHH
Confidence            99775432      3221    1455777777763

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=88.92  E-value=5.8  Score=36.33  Aligned_cols=201  Identities=14%  Similarity=0.104  Sum_probs=106.0

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCC--C----ccccccCH---HHHHHHhHhcCCC
Q 014369          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP--K----WVPQLADA---RDVMEAVRDLEGA  195 (426)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~--~----~~p~~~D~---~~v~~~i~~~~~~  195 (426)
                      -++-+.--|+|+        ++.   .+.++.+.++|++.||+......  .    ..+...+.   +++.+.++ -.++
T Consensus        10 mklg~~~~~~~~--------~~~---~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gl   77 (262)
T 3p6l_A           10 WRLGMQSYSFHL--------FPL---TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAA-SKGI   77 (262)
T ss_dssp             EEEEEEGGGGTT--------SCH---HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHH-HTTC
T ss_pred             cEEEEEecccCC--------CCH---HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHH-HcCC
Confidence            345666666765        233   45677778999999999753210  0    00111122   33333333 2467


Q ss_pred             cEEEEeC----C----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec
Q 014369          196 RLPVLTP----N----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  267 (426)
Q Consensus       196 ~l~~l~~----~----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg  267 (426)
                      ++.++.+    .    .+.++.|.+.|++.|.+... .             +.   ..++.++|++.|+++.  +...  
T Consensus        78 ~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~-~-------------~~---~~~l~~~a~~~gv~l~--~En~--  136 (262)
T 3p6l_A           78 KIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA-L-------------SD---WDLVEKLSKQYNIKIS--VHNH--  136 (262)
T ss_dssp             EEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC-G-------------GG---HHHHHHHHHHHTCEEE--EECC--
T ss_pred             eEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC-H-------------HH---HHHHHHHHHHhCCEEE--EEeC--
Confidence            7666542    1    23567788899999998632 1             22   3467788899998654  3322  


Q ss_pred             CCCCCC-CCHHHHHHHHHHHHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          268 CPVEGA-IPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       268 ~pd~~r-~~~~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                       +.... .+++.+.++++   . +.+ .=..-||.=...-.  .+..+.+++ +..--..+|++|..--.         .
T Consensus       137 -~~~~~~~~~~~~~~ll~---~-~~~~~g~~~D~~h~~~~g--~d~~~~l~~-~~~~i~~vH~~D~~~~~---------~  199 (262)
T 3p6l_A          137 -PQPSDYWKPENLLKAIS---G-RSQSLGSCSDVGHWRREG--LNQIDCLKQ-LKGRIISLHFKDIAPKK---------A  199 (262)
T ss_dssp             -SSSSSSSSHHHHHHHHT---T-SCTTEEEEEEHHHHHHTT--CCHHHHHHH-TTTCEEEEEECEECCCC---------T
T ss_pred             -CCccccCCHHHHHHHHH---h-CCCceEEEechHHHHhcC--CCHHHHHHH-HhhhheEEeeccCCccc---------c
Confidence             11111 36676666664   2 322 22333543211100  012233333 33224778999875110         0


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      |....  .-..+|        .|..+...++..|+..|++
T Consensus       200 ~~~~~--~~~~~G--------~G~id~~~~~~~l~~~gy~  229 (262)
T 3p6l_A          200 GENEQ--HDVIWG--------TGILDVKGMLKELKSQNFK  229 (262)
T ss_dssp             TCSCC--CEECTT--------SSSSCHHHHHHHHHHTTCC
T ss_pred             CcCcc--ccCCCC--------CCccCHHHHHHHHHHCCCC
Confidence            11100  011222        5899999999999987765

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=88.89  E-value=4.8  Score=36.37  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          283 AKELHDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      ++.+.++|++.|.+. +.-...| ..+.++++.+++.+|+..+.+-+|+     ...+..+.++|+++|-++..|..
T Consensus        81 i~~~~~~Gad~v~l~-~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~t  151 (223)
T 1y0e_A           81 VDELIESQCEVIALD-ATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYT  151 (223)
T ss_dssp             HHHHHHHTCSEEEEE-CSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHhCCCCEEEEe-eecccCcccCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcCc
Confidence            455678999988874 3333345 5678899999998887667766664     45577889999999977665554

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=88.82  E-value=3.5  Score=40.69  Aligned_cols=121  Identities=22%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEEeee--cC-----------------CCC-----C-----CCC-------HHHHHH
Q 014369          238 EDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GC-----------------PVE-----G-----AIP-------PSKVAY  281 (426)
Q Consensus       238 ~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f--g~-----------------pd~-----~-----r~~-------~~~l~~  281 (426)
                      ++.++..+++++.++++|-++.+.|...-  +.                 |-+     +     ..+       .+.+.+
T Consensus        77 d~~i~~~~~~~~~vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~  156 (349)
T 3hgj_A           77 EDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVE  156 (349)
T ss_dssp             GGGHHHHHHHHHHHHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHH
Confidence            35577788889999999998887776531  00                 000     0     012       235556


Q ss_pred             HHHHHHhCCCCEEEEcCC-------------------CCCCC---HHHHHHHHHHHHHhcC-CceEEEEeCCC----cCc
Q 014369          282 VAKELHDMGCFEISLGDT-------------------IGVGT---PGTVVPMLEAVMAVVP-VEKLAVHLHDT----YGQ  334 (426)
Q Consensus       282 ~~~~l~~~Gad~I~l~DT-------------------~G~~~---P~~v~~li~~l~~~~p-~~~i~~H~HNd----~Gl  334 (426)
                      .++.+.++|.|.|-|-=.                   .|...   +.-+.++++++++.++ +.+|++-..-+    -|.
T Consensus       157 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~  236 (349)
T 3hgj_A          157 GARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGW  236 (349)
T ss_dssp             HHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSC
T ss_pred             HHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Confidence            677788899998877433                   34322   2235788999999986 54677766532    133


Q ss_pred             HHHH----HHHHHHcCCCEEeecccCCC
Q 014369          335 SLPN----ILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       335 A~AN----aLaAl~aGa~~VD~Sv~GlG  358 (426)
                      -...    +...-++|+++|+.+..+.-
T Consensus       237 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~  264 (349)
T 3hgj_A          237 SLEDTLAFARRLKELGVDLLDCSSGGVV  264 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCcC
Confidence            3322    33445789999999976553

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=88.79  E-value=6.2  Score=39.27  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             hHHHHhhcCCCCccE-EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc
Q 014369          114 DITNKFLKGIPRFVK-IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL  192 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~-I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~  192 (426)
                      .....+|..++..+. .+|.     .    ..++.++-+++++.|.+.|+..||-.++  +      .|. +.++.+++.
T Consensus       182 ~~v~avR~a~g~~~~l~vDa-----n----~~~~~~~A~~~~~~l~~~~i~~iEqP~~--~------~d~-~~~~~l~~~  243 (383)
T 3i4k_A          182 RRVAELAREVGDRVSLRIDI-----N----ARWDRRTALHYLPILAEAGVELFEQPTP--A------DDL-ETLREITRR  243 (383)
T ss_dssp             HHHHHHHHTTTTTSEEEEEC-----T----TCSCHHHHHHHHHHHHHTTCCEEESCSC--T------TCH-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCEEEEEC-----C----CCCCHHHHHHHHHHHHhcCCCEEECCCC--h------hhH-HHHHHHHhh
Confidence            344566666776553 3453     2    3578899999999999999999995321  1      132 334445432


Q ss_pred             CCCcEEEE--eCChhhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          193 EGARLPVL--TPNLKGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       193 ~~~~l~~l--~~~~~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      .++.+.+=  +.+..+++.+++.| ++.|.+=+.-        .     --+..+.+++..|+.+|+.+.
T Consensus       244 ~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~--------~-----GGit~~~~ia~~A~~~gi~~~  300 (383)
T 3i4k_A          244 TNVSVMADESVWTPAEALAVVKAQAADVIALKTTK--------H-----GGLLESKKIAAIAEAGGLACH  300 (383)
T ss_dssp             HCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTT--------T-----TSHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccc--------c-----CCHHHHHHHHHHHHHcCCeEE
Confidence            33443331  24678898888876 6777774321        1     125667788999999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=88.74  E-value=6.2  Score=42.04  Aligned_cols=139  Identities=16%  Similarity=0.088  Sum_probs=87.0

Q ss_pred             HHHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCC
Q 014369          207 FEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA  273 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r  273 (426)
                      .+.|.++|.|.|.|...-        |+.  +....+|-+.++-.+.+.++++.+|+.   .+.+.+-++....  ..+.
T Consensus       147 A~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~--~~~g  224 (671)
T 1ps9_A          147 AQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL--VEDG  224 (671)
T ss_dssp             HHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC--STTC
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc--CCCC
Confidence            356678999998886542        121  122345667777777788888888775   3455444553211  1234


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc----CC----CCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLG----DT----IGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISL  343 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~----DT----~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl  343 (426)
                      .+++...++++.+.++|+|.|.+.    +.    .....| ....++++.+++.+.. +|..=    =|. -..++..++
T Consensus       225 ~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-Pvi~~----Ggi~~~~~a~~~l  299 (671)
T 1ps9_A          225 GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSL-PLVTT----NRINDPQVADDIL  299 (671)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSS-CEEEC----SSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCc-eEEEe----CCCCCHHHHHHHH
Confidence            678889999999999999999874    11    001111 2334678888887753 34331    232 457888889


Q ss_pred             HcC-CCEEee
Q 014369          344 QMG-ISTVDC  352 (426)
Q Consensus       344 ~aG-a~~VD~  352 (426)
                      +.| ||.|-.
T Consensus       300 ~~g~aD~V~~  309 (671)
T 1ps9_A          300 SRGDADMVSM  309 (671)
T ss_dssp             HTTSCSEEEE
T ss_pred             HcCCCCEEEe
Confidence            998 888743

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=88.71  E-value=1.7  Score=42.46  Aligned_cols=82  Identities=15%  Similarity=0.048  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|=   ++.++-.++++.+.+... .++|-+|. +|+.--++..+..|-++|
T Consensus        38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~G  117 (315)
T 3si9_A           38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAG  117 (315)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999984   577888888988888753 44666654 688888999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=..
T Consensus       118 adavlv~  124 (315)
T 3si9_A          118 ADAVLVV  124 (315)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977543

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=88.69  E-value=5.6  Score=38.51  Aligned_cols=188  Identities=16%  Similarity=0.129  Sum_probs=110.6

Q ss_pred             HHHHHHHhCCCCeEEEecC-CC--CCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----Ch----hhHHHHHHcCC
Q 014369          152 ELIRRLVSSGLPVVEATSF-VS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----NL----KGFEAAIAAGA  215 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~-~s--~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~~----~di~~a~~~Gv  215 (426)
                      --++.++++|++.|=+|.. ++  ..+.|.  .-+.++++..++.+. .+.+.+++  +    +.    +.+++..++|+
T Consensus        32 ~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa  111 (287)
T 3b8i_A           32 MSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGI  111 (287)
T ss_dssp             HHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCC
Confidence            3466778899999999854 21  122332  245677777777543 23344443  2    22    34566678999


Q ss_pred             CEEEEeccCCh---HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 014369          216 KEVAIFASASE---AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       216 ~~V~i~~~~Sd---~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      .-|+|-....+   .|...+ =.+.++..++++.+++....-++.|.+--       ++.....+.+.+-++++.++|||
T Consensus       112 ~gv~iED~~~pKrcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRt-------daa~~gl~~ai~Ra~ay~eAGAd  183 (287)
T 3b8i_A          112 AALTIEDTLLPAQFGRKSTD-LICVEEGVGKIRAALEARVDPALTIIART-------NAELIDVDAVIQRTLAYQEAGAD  183 (287)
T ss_dssp             SEEEEECBCCSCCTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEE-------ETTTSCHHHHHHHHHHHHHTTCS
T ss_pred             eEEEEcCCCCccccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEec-------hhhhcCHHHHHHHHHHHHHcCCC
Confidence            99999977532   122222 24677888887776666554456555322       11123467888888999999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      .|.+.   |+-+++.+.++.+.+.  +|.  + +--....++  -+.-.--++|+++|-.....+
T Consensus       184 ~i~~e---~~~~~~~~~~i~~~~~--~P~--i-i~~~g~~~~--~~~~eL~~lGv~~v~~~~~~~  238 (287)
T 3b8i_A          184 GICLV---GVRDFAHLEAIAEHLH--IPL--M-LVTYGNPQL--RDDARLARLGVRVVVNGHAAY  238 (287)
T ss_dssp             EEEEE---CCCSHHHHHHHHTTCC--SCE--E-EECTTCGGG--CCHHHHHHTTEEEEECCCHHH
T ss_pred             EEEec---CCCCHHHHHHHHHhCC--CCE--E-EeCCCCCCC--CCHHHHHHcCCcEEEEChHHH
Confidence            99997   3444566655554442  342  3 322222222  223344578999885554443

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=88.52  E-value=9.6  Score=37.06  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=42.5

Q ss_pred             HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      ..++.|++.+.+.-++.|.     ...|.+|-.+-++.+++.+.. .++|.+      |   .+..+.....++++.+.+
T Consensus        52 ~li~~Gv~Gl~v~GtTGE~-----~~Ls~~Er~~v~~~~v~~~~g-rvpVia------G---vg~~st~eai~la~~A~~  116 (314)
T 3qze_A           52 FHLQEGTNAIVAVGTTGES-----ATLDVEEHIQVIRRVVDQVKG-RIPVIA------G---TGANSTREAVALTEAAKS  116 (314)
T ss_dssp             HHHHHTCCEEEESSGGGTG-----GGCCHHHHHHHHHHHHHHHTT-SSCEEE------E---CCCSSHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEE------e---CCCcCHHHHHHHHHHHHH
Confidence            3445566655555554442     223445444444444444332 133321      1   112234555555555555


Q ss_pred             CCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhc
Q 014369          289 MGCFEISLG-DTIGVGTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       289 ~Gad~I~l~-DT~G~~~P~~v~~li~~l~~~~  319 (426)
                      +|+|.+-+. =..-..+++.+.+.++.+.+..
T Consensus       117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~  148 (314)
T 3qze_A          117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV  148 (314)
T ss_dssp             TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence            555533322 2222334455555555555544

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=88.51  E-value=6.1  Score=38.12  Aligned_cols=136  Identities=18%  Similarity=0.141  Sum_probs=85.3

Q ss_pred             CCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhc------CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee
Q 014369          194 GARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  266 (426)
Q Consensus       194 ~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~------~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f  266 (426)
                      +-++.+++ .+.-..+.+.++|++.|-+-.+++    ...+      ..|.++.+...+.+.+.++.  ..|.+      
T Consensus        16 g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~----~~~lG~~dt~~vTldemi~h~~aV~r~~~~--~~vva------   83 (275)
T 1o66_A           16 GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLG----MAVQGRKSTLPVSLRDMCYHTECVARGAKN--AMIVS------   83 (275)
T ss_dssp             TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHH----HHTTCCSSSTTCCHHHHHHHHHHHHHHCSS--SEEEE------
T ss_pred             CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHH----HHHcCCCCCCCCCHHHHHHHHHHHHhhCCC--CeEEE------
Confidence            45677766 355566677789999885533322    2223      34788888887766555421  11222      


Q ss_pred             cCCCCC-CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEeC------CCc------
Q 014369          267 GCPVEG-AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLH------DTY------  332 (426)
Q Consensus       267 g~pd~~-r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~~i~~H~H------Nd~------  332 (426)
                      ..|+.+ ..+++...+.+.++.++|++.|.|-|.      .++.+.|+++.+. +|   +--|.=      |.+      
T Consensus        84 D~pfgsy~~s~~~a~~na~rl~kaGa~aVklEdg------~e~~~~I~al~~agIp---V~gHiGLtPQs~~~~ggf~v~  154 (275)
T 1o66_A           84 DLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGG------VWMAETTEFLQMRGIP---VCAHIGLTPQSVFAFGGYKVQ  154 (275)
T ss_dssp             ECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEECS------GGGHHHHHHHHHTTCC---EEEEEESCGGGTTC-------
T ss_pred             ECCCCCccCCHHHHHHHHHHHHHcCCcEEEECCc------HHHHHHHHHHHHcCCC---eEeeeccCceeecccCCeEEE
Confidence            134433 357899988888999999999999997      3566777777664 23   333321      111      


Q ss_pred             ------CcHHHHHHHHHHcCCCEE
Q 014369          333 ------GQSLPNILISLQMGISTV  350 (426)
Q Consensus       333 ------GlA~ANaLaAl~aGa~~V  350 (426)
                            --++.-+.+-.+|||+.|
T Consensus       155 grt~~a~~~i~rA~a~~eAGA~~i  178 (275)
T 1o66_A          155 GRGGKAQALLNDAKAHDDAGAAVV  178 (275)
T ss_dssp             ----CHHHHHHHHHHHHHTTCSEE
T ss_pred             eChHHHHHHHHHHHHHHHcCCcEE
Confidence                  235556667779999965

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A

Probab=88.48  E-value=1.8  Score=39.66  Aligned_cols=127  Identities=18%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC----Ch----------------
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NL----------------  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----~~----------------  204 (426)
                      ++...-.+.++.+.++|++ ||+.... +    .+....++.+..+...+ .+.+..+    +.                
T Consensus         7 ~p~~~l~~~l~~~~~~G~~-vEl~~~~-~----~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~l~~~~~~~r~~~~~~~~   79 (254)
T 3ayv_A            7 FPLSRAEEALPRLQALGLG-AEVYLDP-A----LLEEDALFQSLRRRFSG-KLSVHLPFWNLDLLSPDPEVRGLTLRRLL   79 (254)
T ss_dssp             EEGGGHHHHHHHHHHHTCE-EEEECCG-G----GTTCHHHHHHHHHHCCS-CEEEECCCTTCCTTCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-EEEeccc-c----ccCcHHHHHHHHHHhCC-CeEEecCccCCCCCCCCHHHHHHHHHHHH
Confidence            3444556778888899999 9995321 1    11122233333333324 5555543    11                


Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +.++.|.+.|++.|.+.................+...+.+.++.++|++.|+.+.  +..      ....+++.+.++++
T Consensus        80 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn------~~~~~~~~~~~l~~  151 (254)
T 3ayv_A           80 FGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLL--LEN------SHEPHPEALRPVLE  151 (254)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEE--EEC------SSCSSGGGTHHHHH
T ss_pred             HHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEE--EcC------CCCCCHHHHHHHHH
Confidence            1245667789999988744321100000001235566777788899999998654  332      12235666666666


Q ss_pred             HH
Q 014369          285 EL  286 (426)
Q Consensus       285 ~l  286 (426)
                      .+
T Consensus       152 ~v  153 (254)
T 3ayv_A          152 AH  153 (254)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=88.43  E-value=1.9  Score=41.99  Aligned_cols=82  Identities=11%  Similarity=0.063  Sum_probs=70.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+... ..++-+|. +|+.--++..+..|-++|
T Consensus        30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G  109 (307)
T 3s5o_A           30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVG  109 (307)
T ss_dssp             SCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   788999999999998874 45677765 688888999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus       110 adavlv~  116 (307)
T 3s5o_A          110 ADAAMVV  116 (307)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977553

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=88.40  E-value=1.6  Score=42.78  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+... ..+|-+|. +|+.--++..+..|-++|
T Consensus        40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  119 (315)
T 3na8_A           40 GGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLG  119 (315)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999985   578888889998888763 45666665 688888999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=..
T Consensus       120 adavlv~  126 (315)
T 3na8_A          120 AEAVMVL  126 (315)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9977553

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=88.35  E-value=2.2  Score=41.43  Aligned_cols=102  Identities=14%  Similarity=0.098  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCC-CCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~-G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+.. +|.+.-.. .++-...+..+++.+.+.++.
T Consensus         6 ~~~ll~~A~~~~yAv~A-----fNv-----~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~V   75 (286)
T 1gvf_A            6 TKYLLQDAQANGYAVPA-----FNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM   75 (286)
T ss_dssp             SHHHHHHHHHHTCCEEE-----EEC-----CSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCEEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCC
Confidence            35778889999987742     321     3568899999999998876 55554432 233356678888888777763


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  358 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  358 (426)
                       |+.+|.  |.|........|+++|.+  .+|+|-..+-
T Consensus        76 -PValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~lp~e  111 (286)
T 1gvf_A           76 -PLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFA  111 (286)
T ss_dssp             -CBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHH
T ss_pred             -cEEEEc--CCCCCHHHHHHHHHcCCCeEEECCCCCCHH
Confidence             677655  556668999999999998  6798866543

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=88.29  E-value=4.2  Score=40.19  Aligned_cols=121  Identities=12%  Similarity=-0.024  Sum_probs=71.8

Q ss_pred             hHHHHHHcCCCEEEEeccCCh--HHHhh---hcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeec-CCCCCC------
Q 014369          206 GFEAAIAAGAKEVAIFASASE--AFSKS---NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEGA------  273 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd--~~~~~---~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg-~pd~~r------  273 (426)
                      .++.+.+.|+..|+|.+....  .+...   ..+.|  ...+.++.+++.|+++|++|....-.... .+..++      
T Consensus        58 ~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t--~~~~~v~~~~~~Ak~~GL~V~l~p~i~~~~g~w~g~i~~~~~  135 (343)
T 3civ_A           58 SMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVT--VSDDEIASMAELAHALGLKVCLKPTVNCRDGTWRGEIRFEKE  135 (343)
T ss_dssp             HHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTB--CCHHHHHHHHHHHHHTTCEEEEEEEEEETTCCCGGGCCCSBS
T ss_pred             HHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCC--CCHHHHHHHHHHHHHCCCEEEEEEEeeccCCcccccccccCc
Confidence            456667789998887643211  11100   11111  23567789999999999998764433210 011011      


Q ss_pred             ---CCH----------HHHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeC
Q 014369          274 ---IPP----------SKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLH  329 (426)
Q Consensus       274 ---~~~----------~~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~H  329 (426)
                         .++          .++..+++.+...+++.++|.-=.  +...+....+|++.+|+.+|. +|.++..
T Consensus       136 ~~~~~~~w~~~f~~y~~~i~~~a~~a~~~~V~~~~IGNE~~~~~~~~~~~~~Li~~vR~~~~g-~VTya~~  205 (343)
T 3civ_A          136 HGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYDG-LVTYNCN  205 (343)
T ss_dssp             CCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHHHHHHCCS-EEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHccCCCceEEEECCCCCCCCchHHHHHHHHHHHHhhCCC-CEEEEec
Confidence               011          234445555556789999987411  122678899999999999987 7888753

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=88.28  E-value=3  Score=41.72  Aligned_cols=139  Identities=14%  Similarity=0.019  Sum_probs=81.9

Q ss_pred             HHHHHcCCCEEEEeccC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCC-CCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCP-VEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~--~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~p-d~~r~  274 (426)
                      +.|.++|.|.|.|-..-        |+.  ++...+|-+.++-.+.+.++++.+|+. |- .|.+-++...... .....
T Consensus       174 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~  253 (376)
T 1icp_A          174 RNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN  253 (376)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred             HHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCC
Confidence            45678999998887542        121  122346667777777777888777764 42 5555554210000 01234


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCC-CCCCHH-HHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEe
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGDTI-GVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVD  351 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~DT~-G~~~P~-~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD  351 (426)
                      +.+...++++.+.++|++.|.+..-. ....|. ...++++.+++.++. +|..-.  .+  -...+..+++.| ||.|-
T Consensus       254 ~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~i-Pvi~~G--~i--~~~~a~~~l~~g~aD~V~  328 (376)
T 1icp_A          254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKG-TFIVAG--GY--DREDGNRALIEDRADLVA  328 (376)
T ss_dssp             HHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCS-CEEEES--SC--CHHHHHHHHHTTSCSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCC-CEEEeC--CC--CHHHHHHHHHCCCCcEEe
Confidence            56778999999999999999885321 001121 112456778887764 343322  22  246777888888 88763

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=88.26  E-value=9.2  Score=36.74  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             HHHHHcCCCEEEEec-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +..++.|++.|-|.- |+.+-    .--.+.+|=++++..+++..++.++.+.+         |..+      .++++++
T Consensus        37 ~~m~~~GAdiIDIGgeSTRPg----a~~vs~eeE~~Rv~pvi~~l~~~~v~iSI---------DT~~------~~Va~~a   97 (270)
T 4hb7_A           37 KAMIDEGADIIDVGGVSTRPG----HEMVTLEEELNRVLPVVEAIVGFDVKISV---------DTFR------SEVAEAC   97 (270)
T ss_dssp             HHHHHTTCSEEEEESCCCSTT----CCCCCHHHHHHHHHHHHHHHTTSSSEEEE---------ECSC------HHHHHHH
T ss_pred             HHHHHCCCCEEEECCccCCCC----CCCCchHHHHHHHHHHHHHhhcCCCeEEE---------ECCC------HHHHHHH
Confidence            445678999999974 22221    11246788899999999999887765542         3322      2577788


Q ss_pred             HhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc--HH--------HHHHHHHHcCCC----EEe
Q 014369          287 HDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ--SL--------PNILISLQMGIS----TVD  351 (426)
Q Consensus       287 ~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl--A~--------ANaLaAl~aGa~----~VD  351 (426)
                      .++|++.|+  |-. |...|. +.++++    .+...-+-.|...+..-  -+        ...-.|..+|++    ++|
T Consensus        98 l~aGa~iIN--DVs~g~~d~~-m~~~va----~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilD  170 (270)
T 4hb7_A           98 LKLGVDMIN--DQWAGLYDHR-MFQIVA----KYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLD  170 (270)
T ss_dssp             HHHTCCEEE--ETTTTSSCTH-HHHHHH----HTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHhccceec--cccccccchh-HHHHHH----HcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEe
Confidence            899999764  865 555664 333333    23322366676554321  11        234567899995    778


Q ss_pred             ecc
Q 014369          352 CSV  354 (426)
Q Consensus       352 ~Sv  354 (426)
                      -.+
T Consensus       171 PGi  173 (270)
T 4hb7_A          171 PGI  173 (270)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            843

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=88.22  E-value=5.9  Score=37.30  Aligned_cols=168  Identities=16%  Similarity=0.043  Sum_probs=87.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEec-cCChHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFA-SASEAFS  229 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~-~~Sd~~~  229 (426)
                      .++++.|.++|.|.||+|.-   ..+ .+.+..++++.+|+ .++.+..+....+-+    +.|+|.+-+.. +.++.  
T Consensus        23 ~~~~~~l~~~GaD~ielG~S---~Gv-t~~~~~~~v~~ir~-~~~Pivlm~y~~n~i----~~G~dg~iiPdLp~ee~--   91 (240)
T 1viz_A           23 DEQLEILCESGTDAVIIGGS---DGV-TEDNVLRMMSKVRR-FLVPCVLEVSAIEAI----VPGFDLYFIPSVLNSKN--   91 (240)
T ss_dssp             HHHHHHHHTSCCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC----CSCCSEEEEEEETTBSS--
T ss_pred             HHHHHHHHHcCCCEEEECCC---CCC-CHHHHHHHHHHhhC-cCCCEEEecCccccc----cCCCCEEEEcccCcccC--
Confidence            55689999999999999972   111 11112334444444 445555555432222    67999777663 32210  


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcC-----CcEE--EEEEeeecCCCCC--C-------CCHHHHHHHHHHHHhCCCCE
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLS-----IPVR--GYVSCVVGCPVEG--A-------IPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G-----~~v~--~~v~~~fg~pd~~--r-------~~~~~l~~~~~~l~~~Gad~  293 (426)
                              ++.+  +..-++.++++|     +++.  +|+..   .|...  |       .+++.+..+++...-.+-.-
T Consensus        92 --------~~~~--~g~~~~a~~~~g~~~~~l~~i~~gy~l~---~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~  158 (240)
T 1viz_A           92 --------ADWI--VGMHQKAMKEYGELMSMEEIVAEGYCIA---NPDCKAAALTEADADLNMDDIVAYARVSELLQLPI  158 (240)
T ss_dssp             --------GGGT--THHHHHHHHHCHHHHHHSCEEEEEEEEC---CTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSE
T ss_pred             --------hhhh--cchhHHHHHHcCCCCcceeeeecccEEE---CCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCE
Confidence                    0000  011134467778     6654  34432   24321  0       34565555554443344566


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      ||+.- .|..   ...++++.+++..+..++.+=    .|....-....+..||+.|
T Consensus       159 VYl~s-~G~~---~~~~~i~~i~~~~~~~Pv~vG----gGI~t~e~a~~~~~gAd~V  207 (240)
T 1viz_A          159 FYLEY-SGVL---GDIEAVKKTKAVLETSTLFYG----GGIKDAETAKQYAEHADVI  207 (240)
T ss_dssp             EEEEC-TTSC---CCHHHHHHHHHTCSSSEEEEE----SSCCSHHHHHHHHTTCSEE
T ss_pred             EEEeC-CCcc---ChHHHHHHHHHhcCCCCEEEE----eccCCHHHHHHHHhCCCEE
Confidence            66655 6762   257788888887623344432    2333344444444498865

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}

Probab=88.22  E-value=19  Score=36.22  Aligned_cols=156  Identities=10%  Similarity=0.063  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHh-CCCCeEEEecCCCCCccccc-cC--HHHHHHHhHhcCCCcEEEEe-CC---------hhhHHH
Q 014369          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEGARLPVLT-PN---------LKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~~~v~~~i~~~~~~~l~~l~-~~---------~~di~~  209 (426)
                      .++.++..++++.+.+ .|+..|-++. ..    |-+ .|  ..++++.++..++.+...+. ..         .+-++.
T Consensus       144 ~ls~eei~~~i~~i~~~~gi~~V~ltG-GE----Pll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~  218 (416)
T 2a5h_A          144 SMPMERIDKAIDYIRNTPQVRDVLLSG-GD----ALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNM  218 (416)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEEEEE-SC----TTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEEEC-CC----CCCCCHHHHHHHHHHHHhcCCccEEEEEecccccccccCCHHHHHH
Confidence            5788998899999988 7998876653 12    222 22  45566666666655322232 21         233444


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      ..+.  +.+.|.+.....   ..+  +     +.+.+.++.+++.|+.+.......-|.    -.+.+.+.++++.+.+.
T Consensus       219 L~~~--~~v~Isl~~~~~---~ei--~-----~~v~~ai~~L~~aGi~v~i~~vll~Gv----Nd~~e~l~~l~~~l~~l  282 (416)
T 2a5h_A          219 LKKY--HPVWLNTHFNHP---NEI--T-----EESTRACQLLADAGVPLGNQSVLLRGV----NDCVHVMKELVNKLVKI  282 (416)
T ss_dssp             HGGG--CSEEEEECCCSG---GGC--C-----HHHHHHHHHHHHTTCCEEEEEECCTTT----TCSHHHHHHHHHHHHHT
T ss_pred             HHhc--CcEEEEEecCCH---HHH--h-----HHHHHHHHHHHHcCCEEEEEEEEECCC----CCCHHHHHHHHHHHHHc
Confidence            4445  667777654332   122  2     566777888899999876543321111    13567889999999999


Q ss_pred             CCCE--EEEcCCC-CC----CCHHHHHHHHHHHHHhcC
Q 014369          290 GCFE--ISLGDTI-GV----GTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       290 Gad~--I~l~DT~-G~----~~P~~v~~li~~l~~~~p  320 (426)
                      |++.  +.+.+.. |.    ..+.+..++++.++..++
T Consensus       283 gv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~~~~~  320 (416)
T 2a5h_A          283 RVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTS  320 (416)
T ss_dssp             TEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBC
T ss_pred             CCceEEEeecCCCCCcccccCCcccHHHHHHHHHHHCC
Confidence            9874  4555642 32    234566777777777654

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=88.13  E-value=13  Score=35.88  Aligned_cols=62  Identities=11%  Similarity=-0.011  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHHH
Q 014369          245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVPM  311 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~l  311 (426)
                      .+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...+  +++..+|+ +.|+.+.+|
T Consensus        97 i~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L  162 (301)
T 1xky_A           97 IDLTKKATEVGVDAVM-----LVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRL  162 (301)
T ss_dssp             HHHHHHHHHTTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence            3444555666655321     112333344555555555554443 33222  23444444 344444444

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=88.11  E-value=1.8  Score=41.76  Aligned_cols=81  Identities=11%  Similarity=0.059  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhc-CCceEEEEe-CCCcCcHHHHHHHHHHcCC
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVV-PVEKLAVHL-HDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~-p~~~i~~H~-HNd~GlA~ANaLaAl~aGa  347 (426)
                      ..|.+.+.++++.+.+.|++.|.+.-|.|=   ++.++-.++++.+.+.. +..++-+|. +|+.--++..+..|-++||
T Consensus        19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga   98 (292)
T 3daq_A           19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA   98 (292)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999985   56788888899888876 345777776 7889999999999999999


Q ss_pred             CEEeec
Q 014369          348 STVDCS  353 (426)
Q Consensus       348 ~~VD~S  353 (426)
                      +.+=..
T Consensus        99 davlv~  104 (292)
T 3daq_A           99 DAIMLI  104 (292)
T ss_dssp             SEEEEE
T ss_pred             CEEEEC
Confidence            987554

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=88.07  E-value=1.8  Score=44.97  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  355 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~  355 (426)
                      .+.++++.++|+|.|.|-=+.|  .+..+.++++.+++.+|+.+|.+-.    .....-+..++++||+.|.+...
T Consensus       233 ~~~a~~l~~aG~d~I~id~a~g--~~~~~~~~i~~ir~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~Vg~g  302 (496)
T 4fxs_A          233 EERVKALVEAGVDVLLIDSSHG--HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVGIG  302 (496)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTCCEEEEE----ECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHhccCceEEeccccc--cchHHHHHHHHHHHHCCCceEEEcc----cCcHHHHHHHHHhCCCEEEECCC
Confidence            4557778889999888754433  5577889999999999876676621    12345678889999999986654

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=88.06  E-value=1.4  Score=41.20  Aligned_cols=68  Identities=15%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      ++.+.++|+|.|.+ |+.....|..+.++++.+++.  +..+..-+|+     ...+..|.++|+++|=+++.|+.
T Consensus        94 i~~~~~aGad~I~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t  161 (229)
T 3q58_A           94 VDALAQAGADIIAF-DASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT  161 (229)
T ss_dssp             HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHcCCCEEEE-CccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence            55677899998855 777777899999999999874  3345555564     57778999999999977777663

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=88.01  E-value=2.4  Score=43.46  Aligned_cols=201  Identities=14%  Similarity=0.044  Sum_probs=122.3

Q ss_pred             hhHHHHHHcCCCEEEEeccCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC------------
Q 014369          205 KGFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC------------  268 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~S-d~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~------------  268 (426)
                      +-++...++|+.-|+|-..+. +-   |...+-=.+.+++.++++.+.+.++..|....+ +..+-..            
T Consensus       171 ~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~I-iARTDa~aa~l~~s~~d~r  249 (435)
T 3lg3_A          171 ELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLL-IARTDADAADLLTSDCDPY  249 (435)
T ss_dssp             HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEE-EEEECTTTCCEESCCCCGG
T ss_pred             HHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEEcCCccccccccccccc
Confidence            346778899999999998763 20   111111137899999998777777666754321 1111000            


Q ss_pred             ----------CC---CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcC--
Q 014369          269 ----------PV---EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  333 (426)
Q Consensus       269 ----------pd---~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~G--  333 (426)
                                +.   ..+...+...+-+++..+ |||.|.+-  .|.-.++++..+.+.++..+|...+.+-+--.+.  
T Consensus       250 D~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E--~~~~~~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~  326 (435)
T 3lg3_A          250 DREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCE--TSTPDLALAKRFADAVHAQFPGKLLAYNCSPSFNWK  326 (435)
T ss_dssp             GGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHH
T ss_pred             cchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEec--CCCCCHHHHHHHHHHhccccCCeEEEeCCCCCcccc
Confidence                      00   001345666666666677 99999882  2556899999999999988997556543322222  


Q ss_pred             --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-CCCCCCcChhhHHHHHHHHHHHhCC
Q 014369          334 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGR  406 (426)
Q Consensus       334 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-lG~~~~iDl~~L~~la~~v~~~~g~  406 (426)
                        +.   +++ .-.--++|++++=.++.|+        ++-+.++++++..++. -|..   .....+.-.++..+..|.
T Consensus       327 ~~~~d~~~~~f~~eLa~lG~~~v~~~la~~--------raa~~a~~~~a~~~~~~~gm~---ayve~~Q~~e~~~~~~g~  395 (435)
T 3lg3_A          327 KNLTDQQIASFQDELSAMGYKYQFITLAGI--------HSMWFNMFDLAHAYAQGEGMK---HYVEKVQQPEFASVDRGY  395 (435)
T ss_dssp             HHSCHHHHHHHHHHHHHTTEEEEEETTHHH--------HHHHHHHHHHHHHHHHSCHHH---HHHHHTHHHHHTTGGGTC
T ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEeCcHHH--------HHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHhhhccCc
Confidence              11   111 1222368999998888887        6788999999888876 2221   111212222222346677


Q ss_pred             CCCCCCcccchhhh
Q 014369          407 PSGSKTAIALNRIA  420 (426)
Q Consensus       407 ~~~~~~pivG~~vf  420 (426)
                      ..-.++--+|.+-|
T Consensus       396 ~~~~hq~~~G~~y~  409 (435)
T 3lg3_A          396 TFASHQQEVGTGYF  409 (435)
T ss_dssp             CTTSHHHHTTHHHH
T ss_pred             eeeecccccccchH
Confidence            77777777776655

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=87.99  E-value=2.2  Score=42.16  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcC-CCCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGD-TIGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~-I~l~D-T~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      .+++.+.|++.|+-|-+     |.+     .+.+.+..+.+++.+.+... |.+.- +..++....+..++....+.++.
T Consensus         6 ~~~ll~~A~~~~yAV~A-----fNv-----~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   75 (323)
T 2isw_A            6 LRQMLGEARKHKYGVGA-----FNV-----NNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPD   75 (323)
T ss_dssp             HHHHHHHHHHTTCCEEE-----EEC-----CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCceEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCC
Confidence            36788899999987742     321     35789999999999999874 44432 22233345667788887777454


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  359 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  359 (426)
                      +|+.+|.  |.|........|+++|.+  .+|+|-..+-|
T Consensus        76 VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~eE  113 (323)
T 2isw_A           76 IPICIHL--DHGDTLESVKMAIDLGFSSVMIDASHHPFDE  113 (323)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHHH
Confidence            5677765  557777889999999998  67988665433

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=87.96  E-value=2.5  Score=43.83  Aligned_cols=69  Identities=12%  Similarity=0.046  Sum_probs=51.2

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      .+.++++.++|+|.|.|-=+.  ..+..+.++++.+++.+|+.++.+-.    .....-+..++++||+.|.+.+
T Consensus       231 ~~~a~~l~~aG~d~I~id~a~--g~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~vg~  299 (490)
T 4avf_A          231 GERVAALVAAGVDVVVVDTAH--GHSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKVGI  299 (490)
T ss_dssp             HHHHHHHHHTTCSEEEEECSC--CSBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHhhcccceEEecccC--CcchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEECC
Confidence            456778889999998885333  35678889999999999876665521    1334667889999999998743

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}

Probab=87.94  E-value=29  Score=36.50  Aligned_cols=167  Identities=13%  Similarity=0.118  Sum_probs=97.1

Q ss_pred             cEEEeCCc---cccCCCCCCCC-CHHHHHHHHHHHHhCC-----CCeEEEecCCC-CCccccccCHHHHHHH---hHhcC
Q 014369          127 VKIVEVGP---RDGLQNEKNTV-PTGVKVELIRRLVSSG-----LPVVEATSFVS-PKWVPQLADARDVMEA---VRDLE  193 (426)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~f-~~~~ki~I~~~L~~~G-----v~~IEvG~~~s-~~~~p~~~D~~~v~~~---i~~~~  193 (426)
                      +=|+.+|+   =||++.    + +.+..++.++.+.+.|     .+.|++|.-+. |. -+.....+|+.+.   ++.+.
T Consensus       228 MGIlNvTPDSFsDGG~~----~~~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPG-a~~vs~eEEl~RvvpvI~~i~  302 (545)
T 2bmb_A          228 MAIFNATPDSFSDGGEH----FADIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPN-SIQASEEEEIRRSIPLIKAIR  302 (545)
T ss_dssp             EEEEECSCSSTTTTTTT----TTCHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTT-CCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCcCCCcC----cCCHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            45777776   577654    4 7899999999999999     99999996443 32 1222222333333   23321


Q ss_pred             --------CCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEe
Q 014369          194 --------GARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSC  264 (426)
Q Consensus       194 --------~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~  264 (426)
                              ++.+++=+...+-+++|+++|++.|.=.-...         .        -.++++.++++ |..+.  +|+
T Consensus       303 ~~~~~~~~~vpISIDT~~a~VaeaAl~aGadIINDVsg~~---------~--------d~~m~~vva~~~~~~vV--lmH  363 (545)
T 2bmb_A          303 ESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGL---------F--------DSNMFAVIAENPEICYI--LSH  363 (545)
T ss_dssp             HCSSSCGGGEEEEEECCCHHHHHHHHHTTCCEEEETTTTS---------S--------CTTHHHHHHTCTTSEEE--EEC
T ss_pred             hhccccCCCCeEEEeCCcHHHHHHHHHcCCCEEEeCCCCc---------C--------ChHHHHHHHHhCCCeEE--EEC
Confidence                    22233334566778999999999886431110         0        01445566788 87665  555


Q ss_pred             eecCCCC--CC--CC-----------------------------H-----HHHHHHHHHHHhCCCC--EEEEcCCCCCC-
Q 014369          265 VVGCPVE--GA--IP-----------------------------P-----SKVAYVAKELHDMGCF--EISLGDTIGVG-  303 (426)
Q Consensus       265 ~fg~pd~--~r--~~-----------------------------~-----~~l~~~~~~l~~~Gad--~I~l~DT~G~~-  303 (426)
                      .-|.|..  .+  ++                             .     +++.+.++.+.++|++  .|.|==-+|.+ 
T Consensus       364 ~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~K  443 (545)
T 2bmb_A          364 TRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAK  443 (545)
T ss_dssp             CCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred             CCCCCCCccccccccccccccccchhccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccc
Confidence            4444431  00  11                             1     3555677788899986  45554444443 


Q ss_pred             CHHHHHHHHHHHHH
Q 014369          304 TPGTVVPMLEAVMA  317 (426)
Q Consensus       304 ~P~~v~~li~~l~~  317 (426)
                      +.++-.++++.+..
T Consensus       444 t~~~nl~lL~~l~~  457 (545)
T 2bmb_A          444 TWKQNLQIIRHIPI  457 (545)
T ss_dssp             CHHHHHHHHHTHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            34555666666553

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=87.85  E-value=1.3  Score=42.57  Aligned_cols=121  Identities=20%  Similarity=0.285  Sum_probs=79.8

Q ss_pred             CHHHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc
Q 014369          181 DARDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  257 (426)
Q Consensus       181 D~~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~  257 (426)
                      +.+.+...++++  .+++++.++ |..+.++.|.+.|++.|-+...   .+....-....++.|+++.+++++|+++|+.
T Consensus       140 ~~~~L~~~i~~L~~~GIrVSLFIDpd~~qI~aA~~~GAd~IELhTG---~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~  216 (278)
T 3gk0_A          140 HFDAVRAACKQLADAGVRVSLFIDPDEAQIRAAHETGAPVIELHTG---RYADAHDAAEQQREFERIATGVDAGIALGLK  216 (278)
T ss_dssp             THHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHTCSEEEECCH---HHHTCSSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEecc---hhhccCCchhHHHHHHHHHHHHHHHHHcCCE
Confidence            345555566544  578888887 7889999999999999999754   1111100012456799999999999999999


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----cCCCCCCCHHHHHHHHHHHHH
Q 014369          258 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       258 v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-----~DT~G~~~P~~v~~li~~l~~  317 (426)
                      |.+      |   + -.+.+.+..+++   --+..+++|     ++.+=++.+..|+++.+.+++
T Consensus       217 VnA------G---H-GL~y~Nv~~ia~---ip~i~ElnIGHaiIa~Al~~Gl~~AVr~mk~lm~~  268 (278)
T 3gk0_A          217 VNA------G---H-GLHYTNVQAIAA---LPGIAELNIGHAIVAHAVFVGWDNAVREMKAIMVA  268 (278)
T ss_dssp             EEE------C---T-TCCTTTHHHHHT---CTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             Eec------C---C-CCCHHHHHHHHh---CCCCeEEecCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            872      1   2 233444444321   124677776     455666677777777777654

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=87.84  E-value=0.82  Score=43.42  Aligned_cols=76  Identities=14%  Similarity=0.046  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCE--EEEcCCCCCCCHHH--HHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          274 IPPSKVAYVAKELHDMGCFE--ISLGDTIGVGTPGT--VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~--I~l~DT~G~~~P~~--v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                      .|...+.+.++.+.++|+|.  +-+.|  |...|+-  =..+++.+|+..|+.++.+|.+-+.--.  -.-.+.++||++
T Consensus        37 aD~~~L~~~i~~l~~~G~d~lHvDVmD--g~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~--~i~~~~~aGAd~  112 (246)
T 3inp_A           37 ADLARLGDDVKAVLAAGADNIHFDVMD--NHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDA--LIESFAKAGATS  112 (246)
T ss_dssp             SCGGGHHHHHHHHHHTTCCCEEEEEEB--SSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHH--HHHHHHHHTCSE
T ss_pred             CChhhHHHHHHHHHHcCCCEEEEEecC--CCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHH--HHHHHHHcCCCE
Confidence            46677888999999999994  45555  6655522  1367888888887778999999443222  234467999999


Q ss_pred             Eeec
Q 014369          350 VDCS  353 (426)
Q Consensus       350 VD~S  353 (426)
                      |..-
T Consensus       113 itvH  116 (246)
T 3inp_A          113 IVFH  116 (246)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8664

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=87.83  E-value=11  Score=36.16  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCE--EEEcCCCCC-CCHHHHHHHHHHHHHhc
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFE--ISLGDTIGV-GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~--I~l~DT~G~-~~P~~v~~li~~l~~~~  319 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+ .+...  -.++...|+ +.|+.+.+|    . ..
T Consensus        85 ai~la~~a~~~Gadavl-----v~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L----a-~~  154 (291)
T 3tak_A           85 AIELTKAAKDLGADAAL-----LVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRL----A-EI  154 (291)
T ss_dssp             HHHHHHHHHHHTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHH----T-TS
T ss_pred             HHHHHHHHHhcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHH----H-cC
Confidence            34555666777765431     11344344556666666655544 24332  233444444 333433332    2 35


Q ss_pred             CCceEEE-EeCCCc
Q 014369          320 PVEKLAV-HLHDTY  332 (426)
Q Consensus       320 p~~~i~~-H~HNd~  332 (426)
                      |.+ +++ ..+.|.
T Consensus       155 pni-vgiK~ssgd~  167 (291)
T 3tak_A          155 PNI-VGIKDATGDV  167 (291)
T ss_dssp             TTE-EEEEECSCCH
T ss_pred             CCE-EEEEeCCCCH
Confidence            653 555 344443

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=87.82  E-value=13  Score=35.70  Aligned_cols=79  Identities=11%  Similarity=-0.058  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEE--EEcCCCCC-CCHHHHHHHHHHHHHh
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEI--SLGDTIGV-GTPGTVVPMLEAVMAV  318 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~I--~l~DT~G~-~~P~~v~~li~~l~~~  318 (426)
                      ...+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+ .+...+  +++...|+ +.|+.+.+|.+    .
T Consensus        83 ~ai~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~  153 (294)
T 2ehh_A           83 EAVHLTAHAKEVGADGAL-----VVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLAS----E  153 (294)
T ss_dssp             HHHHHHHHHHHTTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHH----H
T ss_pred             HHHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHh----h
Confidence            344566677777876432     11354445566777766666554 344322  34555564 56666666542    2


Q ss_pred             cCCceEEE-EeCCC
Q 014369          319 VPVEKLAV-HLHDT  331 (426)
Q Consensus       319 ~p~~~i~~-H~HNd  331 (426)
                      .|.+ +++ ....|
T Consensus       154 ~pni-vgiKds~gd  166 (294)
T 2ehh_A          154 CENI-VASKESTPN  166 (294)
T ss_dssp             CTTE-EEEEECCSC
T ss_pred             CCCE-EEEEeCCCC
Confidence            4653 555 34434

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=87.73  E-value=1.5  Score=42.80  Aligned_cols=100  Identities=11%  Similarity=-0.010  Sum_probs=77.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+... ..+|-++.-++.--++..+..|-++|
T Consensus        27 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~G  106 (316)
T 3e96_A           27 DGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAG  106 (316)
T ss_dssp             TCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcC
Confidence            35789999999999999999999999999984   678888889998888764 45777776557777888888899999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      |+.|=+.      .||-..    ++-|+++..++
T Consensus       107 adavlv~------~P~y~~----~s~~~l~~~f~  130 (316)
T 3e96_A          107 ADAVMIH------MPIHPY----VTAGGVYAYFR  130 (316)
T ss_dssp             CSEEEEC------CCCCSC----CCHHHHHHHHH
T ss_pred             CCEEEEc------CCCCCC----CCHHHHHHHHH
Confidence            9977543      344322    35566666665

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=87.69  E-value=7.2  Score=35.62  Aligned_cols=196  Identities=13%  Similarity=0.094  Sum_probs=101.5

Q ss_pred             HHHHHHHHhCCCCeEEEe-cCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-------CCh-----------hhHHHHH
Q 014369          151 VELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-------PNL-----------KGFEAAI  211 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG-~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-------~~~-----------~di~~a~  211 (426)
                      .+.++.+.++|++.||+. ......+ +.-.+.+++.+.++. .++++.++.       ++.           +.++.|.
T Consensus        17 ~~~l~~~~~~G~~~vEl~~~~~~~~~-~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~   94 (278)
T 1i60_A           17 KLDLELCEKHGYDYIEIRTMDKLPEY-LKDHSLDDLAEYFQT-HHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCK   94 (278)
T ss_dssp             HHHHHHHHHTTCSEEEEETTTHHHHH-TTSSCHHHHHHHHHT-SSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEccHHHHHHH-hccCCHHHHHHHHHH-cCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            345566678999999998 4321000 011345555555553 355554332       111           1345667


Q ss_pred             HcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          212 AAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       212 ~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.|++.|.+......      -+.+    .+...+.+.++.++|++.|+++.  +...-. +...-.+++.+.++++.+ 
T Consensus        95 ~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~-~~~~~~~~~~~~~l~~~~-  164 (278)
T 1i60_A           95 TLGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEFVGH-PQCTVNTFEQAYEIVNTV-  164 (278)
T ss_dssp             HHTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EECCCC-TTBSSCSHHHHHHHHHHH-
T ss_pred             HcCCCEEEEecCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE--EEecCC-ccchhcCHHHHHHHHHHh-
Confidence            789999888533211      0123    23455666777888899998654  332111 000224667777766654 


Q ss_pred             hCCCCEE-EEcCCCCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 014369          288 DMGCFEI-SLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       288 ~~Gad~I-~l~DT~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  362 (426)
                        +.+.+ ..-|+.=.    ..|.+       +.+.+..--..+|+||..+...         |-. .+.--.-      
T Consensus       165 --~~~~~g~~~D~~h~~~~g~d~~~-------~~~~~~~~i~~vHl~D~~~~~~---------g~~-~~~~~~~------  219 (278)
T 1i60_A          165 --NRDNVGLVLDSFHFHAMGSNIES-------LKQADGKKIFIYHIDDTEDFPI---------GFL-TDEDRVW------  219 (278)
T ss_dssp             --CCTTEEEEEEHHHHHHTTCCHHH-------HHTSCGGGEEEEEECEECCCCT---------TTC-CGGGEES------
T ss_pred             --CCCCeeEEEEeEEEeecCCCHHH-------HHhcCcceEEEEEecCCCCCCc---------cch-hhccCCC------
Confidence              32212 23354211    12322       2233332246789998765310         100 0000011      


Q ss_pred             CCCCCCcccHHHHHHHHHhCCCC
Q 014369          363 AKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       363 a~graGNa~lEevv~~L~~lG~~  385 (426)
                       +| .|..+.+.++..|+..|++
T Consensus       220 -~G-~G~id~~~~~~~L~~~gy~  240 (278)
T 1i60_A          220 -PG-QGAIDLDAHLSALKEIGFS  240 (278)
T ss_dssp             -TT-SSSSCHHHHHHHHHHTTCC
T ss_pred             -CC-CCCCcHHHHHHHHHHcCCC
Confidence             23 5889999999999987764

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=87.61  E-value=1.9  Score=42.16  Aligned_cols=82  Identities=11%  Similarity=-0.003  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+... .++|-+|. +|+.--++..+..|-++|
T Consensus        39 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~G  118 (314)
T 3qze_A           39 GRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG  118 (314)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999985   678888889988888763 45666664 678888999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=..
T Consensus       119 adavlv~  125 (314)
T 3qze_A          119 ADACLLV  125 (314)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=87.60  E-value=2.5  Score=40.93  Aligned_cols=82  Identities=22%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..+|-++ ++|+.--++..+..|-++|
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  107 (301)
T 1xky_A           28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG  107 (301)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   5788888999999887763 3455554 5678888889999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus       108 adavlv~  114 (301)
T 1xky_A          108 VDAVMLV  114 (301)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=87.49  E-value=2.9  Score=40.52  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... ..+|-++. +|+.--++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  106 (303)
T 2wkj_A           27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG  106 (303)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999988   5788888999999888763 45676664 457777888888999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus       107 adavlv~  113 (303)
T 2wkj_A          107 FDAVSAV  113 (303)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEec
Confidence            9977554

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=87.26  E-value=13  Score=35.62  Aligned_cols=80  Identities=11%  Similarity=-0.037  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEE--EEcCCCCC-CCHHHHHHHHHHHHHh
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEI--SLGDTIGV-GTPGTVVPMLEAVMAV  318 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~I--~l~DT~G~-~~P~~v~~li~~l~~~  318 (426)
                      ...+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+ .+...+  +++...|. +.|+.+.+|.+    .
T Consensus        83 ~ai~la~~a~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~  153 (289)
T 2yxg_A           83 EAIELSVFAEDVGADAVL-----SITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAE----E  153 (289)
T ss_dssp             HHHHHHHHHHHHTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH----H
T ss_pred             HHHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHH----h
Confidence            344566677777876432     11354445566777766666554 344432  34555564 55665555532    3


Q ss_pred             cCCceEEE-EeCCCc
Q 014369          319 VPVEKLAV-HLHDTY  332 (426)
Q Consensus       319 ~p~~~i~~-H~HNd~  332 (426)
                      .|.+ +++ ....|.
T Consensus       154 ~pni-vgiK~s~gd~  167 (289)
T 2yxg_A          154 YSNI-SAVKEANPNL  167 (289)
T ss_dssp             CTTE-EEEEECCSCT
T ss_pred             CCCE-EEEEeCCCCH
Confidence            4653 555 444443

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=87.25  E-value=1.6  Score=43.04  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcC-C----CCCCCHHHHHHH---HHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGD-T----IGVGTPGTVVPM---LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~D-T----~G~~~P~~v~~l---i~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +++.+.+.++.+.+.|||.|-|.= +    ..+-..+++.++   |+.+++.+|+.+|.+   |++--.  -+.+|+++|
T Consensus        63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI---DT~~~~--VaeaAl~aG  137 (318)
T 2vp8_A           63 SDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV---DTWRAQ--VAKAACAAG  137 (318)
T ss_dssp             -CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE---ECSCHH--HHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE---eCCCHH--HHHHHHHhC
Confidence            678888899999999999999872 2    123334555444   777788776777887   555544  456788999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      +++|+-.
T Consensus       138 a~iINDV  144 (318)
T 2vp8_A          138 ADLINDT  144 (318)
T ss_dssp             CCEEEET
T ss_pred             CCEEEEC
Confidence            9999644

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=87.04  E-value=11  Score=36.46  Aligned_cols=14  Identities=21%  Similarity=0.261  Sum_probs=8.9

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|..-+.++...+
T Consensus       218 ~~n~~P~~~~~l~~  231 (304)
T 3l21_A          218 IAHLAAGQLRELLS  231 (304)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHH
Confidence            56666676666554

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=86.97  E-value=6.5  Score=39.28  Aligned_cols=70  Identities=10%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEec
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      +.-.+.++.+.++|++.|++-.....   +  ...++.++.++. .++..+.+ -+.+.++.+.+.++|+|.|.+..
T Consensus        99 ~~~~e~~~~a~~aGvdvI~id~a~G~---~--~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~  170 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCVDVAHAH---A--KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGI  170 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCCS---S--HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCC---c--HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcC
Confidence            45578899999999999999543210   0  112455566663 35666555 35678899999999999999853

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=86.94  E-value=3.7  Score=40.01  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcC-C-----CCCCCHHHHHHHH---HHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGD-T-----IGVGTPGTVVPML---EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  345 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~D-T-----~G~~~P~~v~~li---~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a  345 (426)
                      +++...+.++.+.+.|||.|-|.= +     ..+...+++.+++   +.+++.+. .+|.+...+     ..-+.+|+++
T Consensus        61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~-vpiSIDT~~-----~~V~~aAl~a  134 (297)
T 1tx2_A           61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVK-LPISIDTYK-----AEVAKQAIEA  134 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSC-SCEEEECSC-----HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-ceEEEeCCC-----HHHHHHHHHc
Confidence            578888899999999999998873 2     2233345565555   77676653 478887653     3556788899


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      |+++|+..
T Consensus       135 Ga~iINdv  142 (297)
T 1tx2_A          135 GAHIINDI  142 (297)
T ss_dssp             TCCEEEET
T ss_pred             CCCEEEEC
Confidence            99999543

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=86.86  E-value=8.6  Score=35.93  Aligned_cols=199  Identities=13%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhCCCCeEEEecC-CCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          149 VKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      +-+++++...+.|++.+=+==. .+...-+  .+. ++.+.+.+.....+++  -.++.++++..+++|++.|-+-..+-
T Consensus        32 dP~~~a~~~~~~gad~lhvvDld~a~~~~~--~~~-~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~  108 (243)
T 4gj1_A           32 NPLKKFKEYEKAGAKELHLVDLTGAKDPSK--RQF-ALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI  108 (243)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEEHHHHHCGGG--CCH-HHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccccch--hHH-HHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence            4577889999999886654210 0000001  122 3444444334455554  35899999999999999998864321


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC-----CCCC-CCCHHHHHHHHHHHHhCCCCEEEEc-
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC-----PVEG-AIPPSKVAYVAKELHDMGCFEISLG-  297 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~-----pd~~-r~~~~~l~~~~~~l~~~Gad~I~l~-  297 (426)
                      .         +    .+.+.   +.++..|-. +.+.+-.-...     -... ..+.-.+.++++.+.+.|+.+|.+- 
T Consensus       109 ~---------~----p~li~---e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~  172 (243)
T 4gj1_A          109 K---------D----ATLCL---EILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTD  172 (243)
T ss_dssp             T---------C----HHHHH---HHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEE
T ss_pred             c---------C----CchHH---HHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeee
Confidence            1         0    11122   233444532 33223211000     0000 1111235677888899999988875 


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHH
Q 014369          298 -DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVV  376 (426)
Q Consensus       298 -DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv  376 (426)
                       |..|.+.-.++ ++++.+.+.+|.+|+-..+    |.+...=+..+..+++   +.+.|-.=      -.|..+++|++
T Consensus       173 Id~DGt~~G~d~-~l~~~l~~~~~~ipviasG----Gv~~~~Dl~~l~~~~~---gvivg~Al------~~g~i~l~ea~  238 (243)
T 4gj1_A          173 ISKDGTMQGVNV-RLYKLIHEIFPNICIQASG----GVASLKDLENLKGICS---GVIVGKAL------LDGVFSVEEGI  238 (243)
T ss_dssp             TTC-----CCCH-HHHHHHHHHCTTSEEEEES----CCCSHHHHHHTTTTCS---EEEECHHH------HTTSSCHHHHH
T ss_pred             ecccccccCCCH-HHHHHHHHhcCCCCEEEEc----CCCCHHHHHHHHccCc---hhehHHHH------HCCCCCHHHHH
Confidence             66888876666 4778888888766776654    3444444555655543   34443221      25778888877


Q ss_pred             HHHH
Q 014369          377 YMLS  380 (426)
Q Consensus       377 ~~L~  380 (426)
                      ..|.
T Consensus       239 ~~l~  242 (243)
T 4gj1_A          239 RCLA  242 (243)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            6663

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=86.81  E-value=2.2  Score=41.59  Aligned_cols=82  Identities=17%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .++.++-.++++.+.+... ..++-+|. +|+..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  102 (311)
T 3h5d_A           23 GSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG  102 (311)
T ss_dssp             SSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999   5788999999999998864 45677765 678888888899999999


Q ss_pred             C-CEEeec
Q 014369          347 I-STVDCS  353 (426)
Q Consensus       347 a-~~VD~S  353 (426)
                      + +.|=..
T Consensus       103 a~davlv~  110 (311)
T 3h5d_A          103 GFAAGLAI  110 (311)
T ss_dssp             CCSEEEEE
T ss_pred             CCcEEEEc
Confidence            7 876443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=86.78  E-value=2.1  Score=45.64  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEEeeecC---------CCC-----CCCCH------------HHHHHHHHHHHhCCC
Q 014369          238 EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------PVE-----GAIPP------------SKVAYVAKELHDMGC  291 (426)
Q Consensus       238 ~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~---------pd~-----~r~~~------------~~l~~~~~~l~~~Ga  291 (426)
                      ++.++..+++++.++++|-++.+.|... |-         |-+     ....|            +.+.+.++.+.++|.
T Consensus        77 ~~~~~~~~~~~~~vh~~g~~i~~Ql~h~-Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGf  155 (671)
T 1ps9_A           77 ASQIPHHRTITEAVHQEGGKIALQILHT-GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGY  155 (671)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCEEEEECCC-GGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeccC-CcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4556777888888999999888777652 10         000     01122            566777888899999


Q ss_pred             CEEEEc-------------------CCCCCCC---HHHHHHHHHHHHHhcC-CceEEEEe------CC--CcCcHHHHHH
Q 014369          292 FEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVP-VEKLAVHL------HD--TYGQSLPNIL  340 (426)
Q Consensus       292 d~I~l~-------------------DT~G~~~---P~~v~~li~~l~~~~p-~~~i~~H~------HN--d~GlA~ANaL  340 (426)
                      |.|.|-                   |-.|...   +..+.++++++++.++ +.+|.+-.      |.  +...++.-+.
T Consensus       156 d~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~  235 (671)
T 1ps9_A          156 DGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQ  235 (671)
T ss_dssp             SEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHH
T ss_pred             CEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHH
Confidence            988884                   3334322   3447888999999885 44554421      22  2222333344


Q ss_pred             HHHHcCCCEEeecc
Q 014369          341 ISLQMGISTVDCSV  354 (426)
Q Consensus       341 aAl~aGa~~VD~Sv  354 (426)
                      +.-++|+++|+.+.
T Consensus       236 ~l~~~g~d~i~v~~  249 (671)
T 1ps9_A          236 AIEAAGATIINTGI  249 (671)
T ss_dssp             HHHHHTCSEEEEEE
T ss_pred             HHHhcCCCEEEcCC
Confidence            44578999999864

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=86.74  E-value=6.9  Score=36.31  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCC--ce--EEEEeCCCcCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYGQ  334 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~--~~--i~~H~HNd~Gl  334 (426)
                      ++.+.|.|... .+.+....-++.+.+.|||.|-+.=-+|.+   .-..+.+-+..+++..+.  ++  |+.-..++--.
T Consensus        57 v~~vigFP~G~-~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i  135 (220)
T 1ub3_A           57 LVTVVGFPLGY-QEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEI  135 (220)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHH
T ss_pred             EEEEecCCCCC-CchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence            34445677653 455655566788889999999888777754   567778888888877532  22  22222222222


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                       .-.+..|+++|||+|=+|- |.        .+|++..|++-.+.+
T Consensus       136 -~~a~~ia~eaGADfVKTsT-Gf--------~~~gat~~dv~~m~~  171 (220)
T 1ub3_A          136 -ARLAEAAIRGGADFLKTST-GF--------GPRGASLEDVALLVR  171 (220)
T ss_dssp             -HHHHHHHHHHTCSEEECCC-SS--------SSCCCCHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHH
Confidence             2345567899999998885 22        246688888777766

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=86.68  E-value=3.6  Score=39.67  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEE-EeCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAV-HLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~-H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|=   +++++-.++++.+.+... ..+|-+ -++|+.--++..+..|-++|
T Consensus        19 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   98 (294)
T 3b4u_A           19 GTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG   98 (294)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999885   788899999999988764 345555 45678888889999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        99 adavlv~  105 (294)
T 3b4u_A           99 ARNILLA  105 (294)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977554

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*

Probab=86.64  E-value=3.7  Score=42.23  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             CCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHH
Q 014369          162 LPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE  238 (426)
Q Consensus       162 v~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~  238 (426)
                      ++.|-+++..        .|++.+...++   ..-+..+..- .+.+-++++++.+.+.=-+..+++.            
T Consensus       128 aD~I~l~~~~--------~dpe~~~~~Vk~V~e~~dvPlsID-~dp~vleaale~~~d~~pLIns~t~------------  186 (445)
T 2h9a_A          128 VNLVALKGSS--------QDAATFAKAVATAREVTDLPFILI-GTPEQLAAALETEGANNPLLYAATA------------  186 (445)
T ss_dssp             CCEEEEECTT--------CCHHHHHHHHHHHHHHCCSCEEEE-SCHHHHHHHHHHHGGGCCEEEEECT------------
T ss_pred             CcEEEEeCCC--------CCHHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHHHhcCCCCCEEEECCH------------
Confidence            8889998732        24444544444   3346677666 8888899999988752112223332            


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369          239 DSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       239 e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                         +++.+++..|++.+..+.+     .+ +     +.+.+.++.+.+.++|++.|.| |... ..-.....-+..+|+.
T Consensus       187 ---en~~~~~~la~~y~~~vV~-----~~-~-----~l~~l~~lv~~a~~~Gi~~IiL-DP~~-~~~~~sl~~~~~IR~~  250 (445)
T 2h9a_A          187 ---DNYEQMVELAKKYNVPLTV-----SA-K-----GLDALAELVQKITALGYKNLIL-DPQP-ENISEGLFYQTQIRRL  250 (445)
T ss_dssp             ---TTHHHHHHHHHHHTCCEEE-----EC-S-----SHHHHHHHHHHHHHTTCCCEEE-ECCC-SSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCeEEE-----Ec-C-----CHHHHHHHHHHHHHCCCCcEEE-cCCc-hhHHHHHHHHHHHHHh
Confidence               1345677788888988763     21 1     5788999999999999987764 4432 2233444455655554


Q ss_pred             c---CCc-----eEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          319 V---PVE-----KLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       319 ~---p~~-----~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .   ++.     -|..-..-|--+-...+..+++.||++|=+
T Consensus       251 al~~~d~~lg~P~i~~vs~~d~~~ea~lA~~~~~~GasIl~~  292 (445)
T 2h9a_A          251 AIKKLFRPFGYPTIAFALDENPYQAVMEASVYIAKYAGIIVL  292 (445)
T ss_dssp             HHHSCCGGGCSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hhcCCCcccCCCeeecCCchhHHHHHHHHHHHHHcCCeEEEe
Confidence            2   221     133333322224445555558999998733

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=86.52  E-value=5.2  Score=37.04  Aligned_cols=204  Identities=10%  Similarity=0.051  Sum_probs=102.0

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccc--cCHHHHHHHhHhcCCCcEEEEeCC--------h--------hhHHHHHHc
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDLEGARLPVLTPN--------L--------KGFEAAIAA  213 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~~--------~--------~di~~a~~~  213 (426)
                      +.++.+.++|++.||+..+..+ .++..  .+.+++.+.++. .++++.++.+.        .        +.++.|.+.
T Consensus        19 ~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~l   96 (286)
T 3dx5_A           19 DIVQFAYENGFEGIELWGTHAQ-NLYMQEYETTERELNCLKD-KTLEITMISDYLDISLSADFEKTIEKCEQLAILANWF   96 (286)
T ss_dssp             HHHHHHHHTTCCEEEEEHHHHH-HHHHHCHHHHHHHHHHTGG-GTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEcccccc-cccccCHHHHHHHHHHHHH-cCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            4666778899999999642110 01100  112233333322 36666666421        1        235667778


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-  292 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-  292 (426)
                      |++.|.++........  ......+...+.+.++.++|++.|+++.  +..   .+...-.+++.+.++++.+   +.+ 
T Consensus        97 G~~~v~~~~g~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~---~~~~~~~~~~~~~~l~~~~---~~~~  166 (286)
T 3dx5_A           97 KTNKIRTFAGQKGSAD--FSQQERQEYVNRIRMICELFAQHNMYVL--LET---HPNTLTDTLPSTLELLGEV---DHPN  166 (286)
T ss_dssp             TCCEEEECSCSSCGGG--SCHHHHHHHHHHHHHHHHHHHHTTCEEE--EEC---CTTSTTSSHHHHHHHHHHH---CCTT
T ss_pred             CCCEEEEcCCCCCccc--CcHHHHHHHHHHHHHHHHHHHHhCCEEE--Eec---CCCcCcCCHHHHHHHHHhc---CCCC
Confidence            9999988754321100  0000134566777788899999998654  332   1222224567666666544   322 


Q ss_pred             EEEEcCCCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH---HH-HcCCCEEeecccCCCCCCCCCCCC
Q 014369          293 EISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI---SL-QMGISTVDCSVAGLGGCPYAKGAS  367 (426)
Q Consensus       293 ~I~l~DT~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa---Al-~aGa~~VD~Sv~GlGecP~a~gra  367 (426)
                      .=..-||.=.... .+..+.++.+.   +- -..+|++|..+-.....+.   .. ..|...   ....+|        .
T Consensus       167 vg~~~D~~h~~~~g~d~~~~l~~~~---~~-i~~vHl~D~~~~~~~~~~~~~~~~~~~g~~~---~~~~~G--------~  231 (286)
T 3dx5_A          167 LKINLDFLHIWESGADPVDSFQQLR---PW-IQHYHFKNISSADYLHVFEPNNVYAAAGNRT---GMVPLF--------E  231 (286)
T ss_dssp             EEEEEEHHHHHHTTCCHHHHHHHHG---GG-EEEEEECEESCGGGGGGGSHHHHHSTTCCCT---TEECGG--------G
T ss_pred             eEEEeccccHhhcCCCHHHHHHHHH---hH-heEEEecCCcccccccccCccccccccCcce---eeeccC--------C
Confidence            2233344321110 12233333333   32 3678999987742100000   00 011110   011223        5


Q ss_pred             CcccHHHHHHHHHhC
Q 014369          368 GNVATEDVVYMLSGL  382 (426)
Q Consensus       368 GNa~lEevv~~L~~l  382 (426)
                      |..+...++..|+..
T Consensus       232 G~id~~~i~~~L~~~  246 (286)
T 3dx5_A          232 GIVNYDEIIQEVRDT  246 (286)
T ss_dssp             SSSCHHHHHHHHTTS
T ss_pred             CcCCHHHHHHHHHhc
Confidence            889999999999864

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=86.44  E-value=2.5  Score=38.80  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      +.++.+.++|++.|.+-=.. ...|  ..+.++++.+++.+|+..+.+-.|+     ...+..+.++|+++|..++.|+.
T Consensus        92 ~~i~~~~~~Gad~V~l~~~~-~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t-----~~ea~~a~~~Gad~i~~~v~g~~  165 (234)
T 1yxy_A           92 TEVDQLAALNIAVIAMDCTK-RDRHDGLDIASFIRQVKEKYPNQLLMADIST-----FDEGLVAHQAGIDFVGTTLSGYT  165 (234)
T ss_dssp             HHHHHHHTTTCSEEEEECCS-SCCTTCCCHHHHHHHHHHHCTTCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHHHcCCCEEEEcccc-cCCCCCccHHHHHHHHHHhCCCCeEEEeCCC-----HHHHHHHHHcCCCEEeeeccccC
Confidence            34666789999988764322 2234  3567889999988876677776664     34478899999999976777763

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=86.42  E-value=3.4  Score=40.09  Aligned_cols=82  Identities=23%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++|
T Consensus        32 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~G  111 (304)
T 3cpr_A           32 GDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG  111 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   6788888899998887764 3455554 5678888899999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus       112 adavlv~  118 (304)
T 3cpr_A          112 ADGLLVV  118 (304)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=86.41  E-value=12  Score=36.62  Aligned_cols=77  Identities=9%  Similarity=-0.109  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEEE--EcCCCCC-CCHHHHHHHHHHHHHhc
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEIS--LGDTIGV-GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~I~--l~DT~G~-~~P~~v~~li~~l~~~~  319 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+ .+...|.  ++...|+ +.|+.+.+|.     ..
T Consensus       118 ai~la~~A~~~Gadavl-----v~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La-----~~  187 (332)
T 2r8w_A          118 AVALAKDAEAAGADALL-----LAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLA-----YI  187 (332)
T ss_dssp             HHHHHHHHHHHTCSEEE-----ECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHH-----TS
T ss_pred             HHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH-----cC
Confidence            34555667777766431     12344445566666666665544 3444332  3444554 4555555553     24


Q ss_pred             CCceEEE-EeCCC
Q 014369          320 PVEKLAV-HLHDT  331 (426)
Q Consensus       320 p~~~i~~-H~HNd  331 (426)
                      |.+ +++ ....|
T Consensus       188 pnI-vgiKdssgd  199 (332)
T 2r8w_A          188 PNI-RAIKMPLPA  199 (332)
T ss_dssp             TTE-EEEEECCCT
T ss_pred             CCE-EEEEeCCCC
Confidence            653 555 44444

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=86.31  E-value=2.9  Score=41.18  Aligned_cols=82  Identities=10%  Similarity=0.007  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEE-EeCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAV-HLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~-H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... .++|-+ -++|+..-++..+..|-++|
T Consensus        50 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  129 (332)
T 2r8w_A           50 GRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAG  129 (332)
T ss_dssp             CCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998   5788888999999888764 355555 45678888888999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=+.
T Consensus       130 adavlv~  136 (332)
T 2r8w_A          130 ADALLLA  136 (332)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9987544

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=86.29  E-value=12  Score=35.73  Aligned_cols=63  Identities=11%  Similarity=-0.054  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEcCCCCC-CCHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFE--ISLGDTIGV-GTPGTVVPM  311 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~--I~l~DT~G~-~~P~~v~~l  311 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...  -+++...|+ +.|+.+.+|
T Consensus        88 ai~la~~a~~~Gadavl-----v~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L  154 (293)
T 1f6k_A           88 AVELGKYATELGYDCLS-----AVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGEL  154 (293)
T ss_dssp             HHHHHHHHHHHTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHH
Confidence            33555566777766431     113443445566666655554442 3332  234555564 555555555

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=86.25  E-value=11  Score=36.07  Aligned_cols=63  Identities=13%  Similarity=-0.035  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEE--EcCCCCC-CCHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEIS--LGDTIGV-GTPGTVVPM  311 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~--l~DT~G~-~~P~~v~~l  311 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...+.  ++...|+ +.|+.+.+|
T Consensus        85 ai~la~~a~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L  151 (292)
T 2ojp_A           85 AISLTQRFNDSGIVGCL-----TVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRL  151 (292)
T ss_dssp             HHHHHHHTTTSSCSEEE-----EECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHH
Confidence            34555666777765431     113443445666666666665553 333332  3344454 455555554

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=86.16  E-value=2  Score=40.10  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                      ++.+.++|+|.|.+ |+.....|..+.++++.+++.  +..+.+-+|+     ...+..|.++|+++|=+++.|+
T Consensus        94 i~~~~~~Gad~V~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~  160 (232)
T 3igs_A           94 VDALAQAGAAIIAV-DGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGY  160 (232)
T ss_dssp             HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred             HHHHHHcCCCEEEE-CccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccC
Confidence            55677899998855 777777899999999999874  3345555564     5677889999999996666665

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=86.15  E-value=14  Score=35.94  Aligned_cols=14  Identities=7%  Similarity=-0.090  Sum_probs=8.2

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|..-+.++.+.+
T Consensus       230 ~an~~P~~~~~l~~  243 (315)
T 3na8_A          230 APNLIPTLNGQLYQ  243 (315)
T ss_dssp             GGGTCHHHHHHHHH
T ss_pred             hhhhCHHHHHHHHH
Confidence            55666666665554

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=86.13  E-value=5.5  Score=38.58  Aligned_cols=208  Identities=14%  Similarity=0.118  Sum_probs=124.4

Q ss_pred             HHHHHHhCCCCeEEEecC--CCCCcccc--ccCHHHHHHHhHhcC-CCcEEEEe--C----Ch----hhHHHHHHcCCCE
Q 014369          153 LIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLE-GARLPVLT--P----NL----KGFEAAIAAGAKE  217 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~--~s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----~~----~di~~a~~~Gv~~  217 (426)
                      -++.++++|++.|=+|..  +...+.|.  .-+.++++..++.+. .+.+.+++  +    +.    +.++...++|+.-
T Consensus        27 sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~g  106 (290)
T 2hjp_A           27 VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA  106 (290)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeE
Confidence            356678899999999842  11133443  245677887777553 23444443  2    22    3456667899999


Q ss_pred             EEEeccCChH---HHh--hhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--CCCHHHHHHHHHHHHhCC
Q 014369          218 VAIFASASEA---FSK--SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       218 V~i~~~~Sd~---~~~--~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r~~~~~l~~~~~~l~~~G  290 (426)
                      |+|-....+.   |..  .+-=.+.++..++++.+++....-++.|.+--       |+.  ....+...+-++++.++|
T Consensus       107 v~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRt-------da~~a~~g~~~ai~Ra~ay~eAG  179 (290)
T 2hjp_A          107 IVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV-------EALIAGLGQQEAVRRGQAYEEAG  179 (290)
T ss_dssp             EEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE-------CTTTTTCCHHHHHHHHHHHHHTT
T ss_pred             EEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee-------hHhhccccHHHHHHHHHHHHHcC
Confidence            9998775421   111  11113566778877766665555456555321       111  123678888888999999


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEEeecccCCCCCCCCCCCCCc
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSVAGLGGCPYAKGASGN  369 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~VD~Sv~GlGecP~a~graGN  369 (426)
                      ||.|.+.=.  .-+++++.++.+.+...+|   +-+-+-.-..+   ..-.--++| +++|-.....+        |+-+
T Consensus       180 Ad~i~~e~~--~~~~~~~~~i~~~~~~~vP---~i~n~~~~~~~---~~~eL~~lG~v~~v~~~~~~~--------raa~  243 (290)
T 2hjp_A          180 ADAILIHSR--QKTPDEILAFVKSWPGKVP---LVLVPTAYPQL---TEADIAALSKVGIVIYGNHAI--------RAAV  243 (290)
T ss_dssp             CSEEEECCC--CSSSHHHHHHHHHCCCSSC---EEECGGGCTTS---CHHHHHTCTTEEEEEECSHHH--------HHHH
T ss_pred             CcEEEeCCC--CCCHHHHHHHHHHcCCCCC---EEEeccCCCCC---CHHHHHhcCCeeEEEechHHH--------HHHH
Confidence            999998531  3456777777666643344   33322101222   223445789 99887766655        5778


Q ss_pred             ccHHHHHHHHHhCC
Q 014369          370 VATEDVVYMLSGLG  383 (426)
Q Consensus       370 a~lEevv~~L~~lG  383 (426)
                      .++++++..|+.-|
T Consensus       244 ~a~~~~~~~i~~~g  257 (290)
T 2hjp_A          244 GAVREVFARIRRDG  257 (290)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC
Confidence            88888888887644

>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A

Probab=86.03  E-value=1.9  Score=40.58  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=68.2

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +....+.|.+.|.+|- ..-           ...++.++.+++.|-++|+-++         | .+-.|.+.+.++.+.+
T Consensus       151 iaml~dmG~~SvKffP-m~G-----------l~~l~E~~avAka~a~~g~~lE---------P-TGGIdl~N~~~I~~i~  208 (249)
T 3m0z_A          151 IALLKDMGGSSIKYFP-MGG-----------LKHRAEFEAVAKACAAHDFWLE---------P-TGGIDLENYSEILKIA  208 (249)
T ss_dssp             HHHHHHTTCCEEEECC-CTT-----------TTTHHHHHHHHHHHHHTTCEEE---------E-BSSCCTTTHHHHHHHH
T ss_pred             HHHHHHcCCCeeeEee-cCC-----------cccHHHHHHHHHHHHHcCceEC---------C-CCCccHhhHHHHHHHH
Confidence            3444578999999882 111           1336777888899999998433         2 4568889999999999


Q ss_pred             HhCCCCEEE-------EcCCCCCCCHHHHHHHHHHHHHhc
Q 014369          287 HDMGCFEIS-------LGDTIGVGTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       287 ~~~Gad~I~-------l~DT~G~~~P~~v~~li~~l~~~~  319 (426)
                      .++|+..|.       |--..|...|++|+++++.+++.+
T Consensus       209 l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~l~  248 (249)
T 3m0z_A          209 LDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLV  248 (249)
T ss_dssp             HHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHHHC
T ss_pred             HHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHhh
Confidence            999986542       334679999999999999998753

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=86.00  E-value=2.3  Score=41.45  Aligned_cols=82  Identities=12%  Similarity=-0.013  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..+|-++.=.+.--++..+..|-++||
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Ga  107 (314)
T 3d0c_A           28 REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGA  107 (314)
T ss_dssp             CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999988   6788888999999888764 456766654455667788888999999


Q ss_pred             CEEeec
Q 014369          348 STVDCS  353 (426)
Q Consensus       348 ~~VD~S  353 (426)
                      +.|=..
T Consensus       108 davlv~  113 (314)
T 3d0c_A          108 DCVMIH  113 (314)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            977554

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=85.99  E-value=17  Score=34.54  Aligned_cols=168  Identities=15%  Similarity=0.125  Sum_probs=97.9

Q ss_pred             HHHHHhCCCCeEEEecCCCCCc-cccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSFVSPKW-VPQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~-~p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~  217 (426)
                      +..-.+.|.++||+=.-....+ -|.    ..+++.+++..++.+.+++|.               ++|++.+.++|++.
T Consensus        14 a~~A~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadG   89 (256)
T 1twd_A           14 ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPG   89 (256)
T ss_dssp             HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCE
Confidence            4455788999999954211111 122    234455554456777777752               24778889999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |.+-+-..|-.      .+    .++++++++.|+  |+.+.  |=.+|   |.. .||.   +..+.+.++|+++|-  
T Consensus        90 vV~G~Lt~dg~------iD----~~~~~~Li~~a~--~~~vT--FHRAf---D~~-~d~~---~ale~L~~lG~~rIL--  146 (256)
T 1twd_A           90 LVTGVLDVDGN------VD----MPRMEKIMAAAG--PLAVT--FHRAF---DMC-ANPL---YTLNNLAELGIARVL--  146 (256)
T ss_dssp             EEECCBCTTSS------BC----HHHHHHHHHHHT--TSEEE--ECGGG---GGC-SCHH---HHHHHHHHHTCCEEE--
T ss_pred             EEEeeECCCCC------cC----HHHHHHHHHHhC--CCcEE--EECch---hcc-CCHH---HHHHHHHHcCCCEEE--
Confidence            98886544421      11    455667777775  55544  44445   222 3443   356778888999987  


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          298 DTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       298 DT~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                       |.|.. +..+-.++++.+.+....+.|-.=+    |.-..|+-.=+..|++.||.|
T Consensus       147 -TSG~~~~a~~g~~~L~~Lv~~a~~i~Im~Gg----Gv~~~Ni~~l~~tGv~e~H~S  198 (256)
T 1twd_A          147 -TSGQKSDALQGLSKIMELIAHRDAPIIMAGA----GVRAENLHHFLDAGVLEVHSS  198 (256)
T ss_dssp             -ECTTSSSTTTTHHHHHHHHTSSSCCEEEEES----SCCTTTHHHHHHHTCSEEEEC
T ss_pred             -CCCCCCCHHHHHHHHHHHHHhhCCcEEEecC----CcCHHHHHHHHHcCCCeEeEC
Confidence             66654 3344455666665543322222111    333344444347899999977

>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A

Probab=85.98  E-value=1.7  Score=41.39  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +....+.|...|.+|- ..-           ...++.++.+++.|-+.|+-++         | .+-.|.+.+.++++.+
T Consensus       174 iaml~dmG~~SvKffP-M~G-----------l~~leEl~avAkAca~~g~~lE---------P-TGGIdl~Nf~~I~~i~  231 (275)
T 3m6y_A          174 IALVRDMGGNSLKYFP-MKG-----------LAHEEEYRAVAKACAEEGFALE---------P-TGGIDKENFETIVRIA  231 (275)
T ss_dssp             HHHHHHHTCCEEEECC-CTT-----------TTTHHHHHHHHHHHHHHTCEEE---------E-BSSCCTTTHHHHHHHH
T ss_pred             HHHHHHcCCCeeeEee-cCC-----------cccHHHHHHHHHHHHHcCceEC---------C-CCCccHhHHHHHHHHH
Confidence            3444578999999882 111           1336777888899999998433         2 4568889999999999


Q ss_pred             HhCCCCEEE-------EcCCCCCCCHHHHHHHHHHHHHhcC
Q 014369          287 HDMGCFEIS-------LGDTIGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       287 ~~~Gad~I~-------l~DT~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .++|+..|.       |--..|...|++|+++++.+++.+.
T Consensus       232 l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l~~  272 (275)
T 3m6y_A          232 LEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKLVD  272 (275)
T ss_dssp             HHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999986442       3346799999999999999987653

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=85.94  E-value=2.6  Score=40.69  Aligned_cols=74  Identities=18%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcC-CC--CC------CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGD-TI--GV------GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~D-T~--G~------~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      .+++.+.+.++.+.+.|||.|-|.= +.  |.      -...++..+|+.+++.+ +.+|.++..+     ..-+.+|++
T Consensus        35 ~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~-----~~va~aAl~  108 (282)
T 1aj0_A           35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSK-----PEVIRESAK  108 (282)
T ss_dssp             THHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCC-----HHHHHHHHH
Confidence            3578899999999999999998875 32  21      11234566677776665 4579997765     355678899


Q ss_pred             cCCCEEeec
Q 014369          345 MGISTVDCS  353 (426)
Q Consensus       345 aGa~~VD~S  353 (426)
                      +|+++|+-.
T Consensus       109 aGa~iINdv  117 (282)
T 1aj0_A          109 VGAHIINDI  117 (282)
T ss_dssp             TTCCEEEET
T ss_pred             cCCCEEEEC
Confidence            999999543

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=85.85  E-value=13  Score=36.57  Aligned_cols=78  Identities=12%  Similarity=0.028  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHHHHHHHHHhc
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~li~~l~~~~  319 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...|  +++...|+ +.|+.+.+|.+    ..
T Consensus       115 ai~la~~A~~~Gadavl-----v~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~----~~  185 (343)
T 2v9d_A          115 TIELSQHAQQAGADGIV-----VINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLAD----SR  185 (343)
T ss_dssp             HHHHHHHHHHHTCSEEE-----EECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHH----HC
T ss_pred             HHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHH----hC
Confidence            34566677777876432     113544455677777777666554 44433  34555564 56666655532    34


Q ss_pred             CCceEEE-EeCCC
Q 014369          320 PVEKLAV-HLHDT  331 (426)
Q Consensus       320 p~~~i~~-H~HNd  331 (426)
                      |.+ +++ ....|
T Consensus       186 pnI-vgiKdssgd  197 (343)
T 2v9d_A          186 SNI-IGIKDTIDS  197 (343)
T ss_dssp             TTE-EEEEECCSC
T ss_pred             CCE-EEEEeCCCC
Confidence            653 555 34444

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=85.85  E-value=6.8  Score=36.05  Aligned_cols=183  Identities=9%  Similarity=-0.059  Sum_probs=98.6

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe------C--C-----hhhHHHHHHcCCCE
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT------P--N-----LKGFEAAIAAGAKE  217 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~------~--~-----~~di~~a~~~Gv~~  217 (426)
                      .+.++.+.++|++.||+......   |. .+.+++.+.++. .++++....      +  .     .+.++.|.+.|++.
T Consensus        26 ~~~l~~a~~~G~~~vEl~~~~~~---~~-~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~  100 (264)
T 1yx1_A           26 ASFLPLLAMAGAQRVELREELFA---GP-PDTEALTAAIQL-QGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGW  100 (264)
T ss_dssp             GGGHHHHHHHTCSEEEEEGGGCS---SC-CCHHHHHHHHHH-TTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHcCCCEEEEEHHhcC---CC-HHHHHHHHHHHH-cCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCE
Confidence            34677788999999999743111   11 145566666553 244443321      1  1     23567778889999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |++.......          .+   .+.++.++|++.|+++.  +...   +...-.+++.+.++++.+.+.+...=.+-
T Consensus       101 v~~~~g~~~~----------~~---~l~~l~~~a~~~Gv~l~--lEn~---~~~~~~~~~~~~~ll~~v~~~~~~vg~~~  162 (264)
T 1yx1_A          101 LKVSLGLLPE----------QP---DLAALGRRLARHGLQLL--VEND---QTPQGGRIEVLERFFRLAERQQLDLAMTF  162 (264)
T ss_dssp             EEEEEECCCS----------SC---CHHHHHHHHTTSSCEEE--EECC---SSHHHHCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEecCCCCc----------HH---HHHHHHHHHHhcCCEEE--EecC---CCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence            9887532110          01   35577788888997654  3221   00001246677777776655555533455


Q ss_pred             CCCCCC-CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc-ccHHHH
Q 014369          298 DTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN-VATEDV  375 (426)
Q Consensus       298 DT~G~~-~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN-a~lEev  375 (426)
                      ||.-.. ......+.++.+.   +- -..+|++|..+-.          +-+..+   ..+|        .|. .+...+
T Consensus       163 D~g~~~~~~~d~~~~~~~~~---~~-i~~vHlkD~~~~~----------~~~~~~---~~~G--------~G~~id~~~~  217 (264)
T 1yx1_A          163 DIGNWRWQEQAADEAALRLG---RY-VGYVHCKAVIRNR----------DGKLVA---VPPS--------AADLQYWQRL  217 (264)
T ss_dssp             ETTGGGGGTCCHHHHHHHHG---GG-EEEEEECEEEECT----------TSCEEE---ECCC--------HHHHHHHHHH
T ss_pred             ehhhhhhcCCCHHHHHHHhh---hh-EEEEEeecccCCC----------CCceee---ECCC--------CCCccCHHHH
Confidence            883222 1223334444443   32 3678888765421          101111   1233        578 888888


Q ss_pred             HHHHHh
Q 014369          376 VYMLSG  381 (426)
Q Consensus       376 v~~L~~  381 (426)
                      +..|+.
T Consensus       218 ~~~L~~  223 (264)
T 1yx1_A          218 LQHFPE  223 (264)
T ss_dssp             HTTSCT
T ss_pred             HHHhhc
Confidence            888875

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=85.71  E-value=13  Score=35.85  Aligned_cols=79  Identities=11%  Similarity=0.010  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHHHHHHHHHh
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVPMLEAVMAV  318 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~li~~l~~~  318 (426)
                      ...+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...+  +++...|+ +.|+.+.+|.+    .
T Consensus        95 ~ai~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~  165 (306)
T 1o5k_A           95 KTLKLVKQAEKLGANGVL-----VVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAA----D  165 (306)
T ss_dssp             HHHHHHHHHHHHTCSEEE-----EECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHH----H
T ss_pred             HHHHHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHH----h
Confidence            344566677777876432     113544456777777777776654 33322  34555664 56666666542    3


Q ss_pred             cCCceEEE-EeCCC
Q 014369          319 VPVEKLAV-HLHDT  331 (426)
Q Consensus       319 ~p~~~i~~-H~HNd  331 (426)
                      .|.+ +++ ....|
T Consensus       166 ~pnI-vgiKdssgd  178 (306)
T 1o5k_A          166 LKNV-VGIXEANPD  178 (306)
T ss_dssp             CTTE-EEEEECCCC
T ss_pred             CCCE-EEEeCCCCC
Confidence            4653 555 44444

>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*

Probab=85.64  E-value=27  Score=33.84  Aligned_cols=172  Identities=10%  Similarity=0.078  Sum_probs=102.6

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~A-k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++...+.+.+.|.|-....        +.+++..++    ++..+ ++.|+++..+++|.    +   .+.+.+.+....
T Consensus        45 ~~~l~~l~p~fvsVT~gag--------g~~r~~t~~----~a~~i~~~~g~~~v~Hltc~----~---~~~~~l~~~L~~  105 (304)
T 3fst_A           45 IDRLSSLKPKFVSVTYGAN--------SGERDRTHS----IIKGIKDRTGLEAAPHLTCI----D---ATPDELRTIARD  105 (304)
T ss_dssp             HHHHHTTCCSEEEECCCTT--------SSCHHHHHH----HHHHHHHHHCCCEEEEEEST----T---SCHHHHHHHHHH
T ss_pred             HHHHhcCCCCEEEEeeCCC--------CcchhHHHH----HHHHHHHHhCCCeeEEeecC----C---CCHHHHHHHHHH
Confidence            4555567788877765432        223444443    34444 45799999888863    2   467889898989


Q ss_pred             HHhCCCC-EEEE-cCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEe----CCCc---CcHHHHHHHHHHcCCCEEeecc
Q 014369          286 LHDMGCF-EISL-GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHL----HDTY---GQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       286 l~~~Gad-~I~l-~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~----HNd~---GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      +.++|++ .+.| .|-....  ......+||+.+++. ++-.|++=+    |-.-   ..-+.+...=+++||+.+=|=+
T Consensus       106 ~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~iTQ~  184 (304)
T 3fst_A          106 YWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQF  184 (304)
T ss_dssp             HHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             HHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence            9999997 5555 5543221  223456777777765 333455543    3322   2245666677899999876655


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHhCCCCC----CcC-hhhHHHHHHHHHHHhCCCCCC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSGLGVET----NVD-LRKLMLAGDFINKHLGRPSGS  410 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~lG~~~----~iD-l~~L~~la~~v~~~~g~~~~~  410 (426)
                      .           --+-..+.++..++..|++.    ||= +.....+. ++.+..|+.+|.
T Consensus       185 f-----------fD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~-~~~~~~Gv~iP~  233 (304)
T 3fst_A          185 F-----------FDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAK-KLADMTNVRIPA  233 (304)
T ss_dssp             C-----------SCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHH-HHHHHHTCCCCH
T ss_pred             c-----------CCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHH-HHHHcCCCcCCH
Confidence            4           34566677777777677653    221 22222222 335677888875

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=85.62  E-value=23  Score=34.11  Aligned_cols=14  Identities=14%  Similarity=0.230  Sum_probs=9.5

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|...+.++...+
T Consensus       219 ~an~~P~~~~~l~~  232 (304)
T 3cpr_A          219 IGHAAPTALRELYT  232 (304)
T ss_dssp             GGGTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHH
Confidence            66777777776554

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=85.54  E-value=3  Score=40.19  Aligned_cols=83  Identities=13%  Similarity=0.020  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHc
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQM  345 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~a  345 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++
T Consensus        15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~   94 (294)
T 2ehh_A           15 EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEV   94 (294)
T ss_dssp             TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999988   5778888899999888764 3456554 567788888899999999


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      ||+.+=..
T Consensus        95 Gadavlv~  102 (294)
T 2ehh_A           95 GADGALVV  102 (294)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=85.52  E-value=11  Score=37.45  Aligned_cols=123  Identities=13%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC--------------CCC---------------C----CCCH-----
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PVE---------------G----AIPP-----  276 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~--------------pd~---------------~----r~~~-----  276 (426)
                      ...++.++..+++++.++++|-++.+.|... |-              |-+               .    ..+.     
T Consensus        72 i~~d~~i~~~k~l~~avH~~G~~i~~QL~H~-Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~  150 (362)
T 4ab4_A           72 IWNDEQVRGWNNVTKAVHAAGGRIFLQLWHV-GRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEIND  150 (362)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCEEEEEeccC-cccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHH
Confidence            3345678888999999999999988888653 10              000               0    0112     


Q ss_pred             --HHHHHHHHHHHhCCCCEEEEcCCC-------------------CCCC---HHHHHHHHHHHHHhcCCceEEEEeCCC-
Q 014369          277 --SKVAYVAKELHDMGCFEISLGDTI-------------------GVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDT-  331 (426)
Q Consensus       277 --~~l~~~~~~l~~~Gad~I~l~DT~-------------------G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd-  331 (426)
                        +.+.+.++++.++|.|.|-|-=.-                   |...   +.-+.++|+++++.++..+|.+-.+-+ 
T Consensus       151 ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~  230 (362)
T 4ab4_A          151 IVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRA  230 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccc
Confidence              344556777888999988884333                   3221   234678889999988633788766643 


Q ss_pred             -c-Cc--------HHHHHHHHHHcCCCEEeecccCCC
Q 014369          332 -Y-GQ--------SLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       332 -~-Gl--------A~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                       + |+        ++.-+.+.-++|+++|+.+-...|
T Consensus       231 ~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~  267 (362)
T 4ab4_A          231 DAHDMGDADRAETFTYVARELGKRGIAFICSREREAD  267 (362)
T ss_dssp             CSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred             cccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence             1 11        223333445789999999876533

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=85.43  E-value=13  Score=35.53  Aligned_cols=14  Identities=21%  Similarity=0.064  Sum_probs=9.3

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|...+.++.+.+
T Consensus       197 ~an~~P~~~~~l~~  210 (286)
T 2r91_A          197 SANYLPELLAGIRD  210 (286)
T ss_dssp             GGTTCHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            56777777776654

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.15  E-value=3.1  Score=39.96  Aligned_cols=83  Identities=13%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHc
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQM  345 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~a  345 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++
T Consensus        15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~   94 (289)
T 2yxg_A           15 NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDV   94 (289)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999988   4778888899998887764 3456554 567788888999999999


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      ||+.+=..
T Consensus        95 Gadavlv~  102 (289)
T 2yxg_A           95 GADAVLSI  102 (289)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=85.09  E-value=3.7  Score=40.63  Aligned_cols=82  Identities=10%  Similarity=-0.005  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   +++++-.++++.+.+... .++|-++ ++|+.--++..+..|-++|
T Consensus        47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  126 (343)
T 2v9d_A           47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG  126 (343)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999985   788888999999887763 4456665 4578888888999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.|=+.
T Consensus       127 adavlv~  133 (343)
T 2v9d_A          127 ADGIVVI  133 (343)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=85.05  E-value=10  Score=36.37  Aligned_cols=62  Identities=18%  Similarity=0.041  Sum_probs=44.6

Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  264 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~  264 (426)
                      +.++++...+.|+..||+.+.-.........+.-.+..++.+.++|++|+++|+.|.+.+-.
T Consensus        30 ~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~~g~~~~~~~~~l~~~v~~a~~~Gi~vildlh~   91 (343)
T 1ceo_A           30 TEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMHH   91 (343)
T ss_dssp             CHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEecCCHHHhccccCCCcccHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            46789999999999999987632211111011223567899999999999999999877654

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=84.92  E-value=10  Score=37.80  Aligned_cols=121  Identities=13%  Similarity=0.006  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC--------------CCC---------------C-------CCC----H
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PVE---------------G-------AIP----P  276 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~--------------pd~---------------~-------r~~----~  276 (426)
                      .++.++..+++++.++++|-++.+.|... |-              |-+               .       ..+    .
T Consensus        82 ~d~~i~~~k~l~~avH~~G~~i~~QL~H~-Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii  160 (361)
T 3gka_A           82 SPEQVDGWRLVTDAVHAAGGRIFLQLWHV-GRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVV  160 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEeeccC-CccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHH
Confidence            35678888899999999999988888653 10              000               0       001    2


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCC-------------------CCCC---HHHHHHHHHHHHHhcCCceEEEEeCCCc--
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTI-------------------GVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTY--  332 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~-------------------G~~~---P~~v~~li~~l~~~~p~~~i~~H~HNd~--  332 (426)
                      +.+.+.++++.++|.|.|.|-=.-                   |...   +.-+.++++++|+.++..+|++-.+-+-  
T Consensus       161 ~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~  240 (361)
T 3gka_A          161 AAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDA  240 (361)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCS
T ss_pred             HHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence            355567778889999988884433                   3221   2346788999999986337888666431  


Q ss_pred             -Cc--------HHHHHHHHHHcCCCEEeecccCCC
Q 014369          333 -GQ--------SLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       333 -Gl--------A~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                       |+        ++.-+.+.-++|+++|+.+-...|
T Consensus       241 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~  275 (361)
T 3gka_A          241 HTMGDSDPAATFGHVARELGRRRIAFLFARESFGG  275 (361)
T ss_dssp             SSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCST
T ss_pred             CCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence             21        233333445789999999875533

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=84.92  E-value=2.8  Score=41.04  Aligned_cols=116  Identities=18%  Similarity=0.147  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcC-CCCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGD-TIGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~D-T~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++.+.|++.|+-|-+     |.+     .+.+.+..+.+++.+.+...| .+.- +..++....+..+++.+.+  ..
T Consensus         5 ~~~ll~~A~~~~yAV~A-----fNv-----~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~--~~   72 (305)
T 1rvg_A            5 GLEILKKAREEGYGVGA-----FNV-----NNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE--AR   72 (305)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EEC-----CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH--CS
T ss_pred             HHHHHHHHHHCCCEEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh--CC
Confidence            45788899999987752     321     357899999999999998744 3332 1222333556677777766  44


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      +|+.+|.  |.|......+.|+++|.+  .+|+|-..+-|        -..-|-+++.+.+.
T Consensus        73 VPValHl--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~eE--------Ni~~Tk~vv~~ah~  124 (305)
T 1rvg_A           73 VPVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFET--------NVRETRRVVEAAHA  124 (305)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH--------HHHHHHHHHHHHHH
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeeeeCCCCCCHHH--------HHHHHHHHHHHHHH
Confidence            4677765  566678999999999998  67988665544        12344555555553

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=84.92  E-value=9.2  Score=38.26  Aligned_cols=80  Identities=6%  Similarity=-0.002  Sum_probs=50.7

Q ss_pred             HHHHHHHHHH-hCCCCEEEE--------------------cCCCCC-CC---HHHHHHHHHHHHHhcCCceEEEEeCCC-
Q 014369          278 KVAYVAKELH-DMGCFEISL--------------------GDTIGV-GT---PGTVVPMLEAVMAVVPVEKLAVHLHDT-  331 (426)
Q Consensus       278 ~l~~~~~~l~-~~Gad~I~l--------------------~DT~G~-~~---P~~v~~li~~l~~~~p~~~i~~H~HNd-  331 (426)
                      .+.+.++.+. ++|.|.|-|                    .|-.|. ..   +..+.++++++++.++..+|.+-.--+ 
T Consensus       175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~  254 (379)
T 3aty_A          175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN  254 (379)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence            3345677788 999998887                    555565 22   345688889999988743577732211 


Q ss_pred             ------cCc----HHHHHHHHHHcCCCEEeecccCC
Q 014369          332 ------YGQ----SLPNILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       332 ------~Gl----A~ANaLaAl~aGa~~VD~Sv~Gl  357 (426)
                            -|.    ++.-+-+..++|+++|+.+..++
T Consensus       255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~  290 (379)
T 3aty_A          255 GVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDM  290 (379)
T ss_dssp             CGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc
Confidence                  122    22333333478999999987553

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=84.92  E-value=16  Score=31.91  Aligned_cols=107  Identities=20%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      +.-++..|...|++++-.|..++         .+++.                     +.+.+.+.+.|.+......   
T Consensus        35 ~~~va~~l~~~G~eVi~lG~~~p---------~e~lv---------------------~aa~~~~~diV~lS~~~~~---   81 (161)
T 2yxb_A           35 AKVVARALRDAGFEVVYTGLRQT---------PEQVA---------------------MAAVQEDVDVIGVSILNGA---   81 (161)
T ss_dssp             HHHHHHHHHHTTCEEECCCSBCC---------HHHHH---------------------HHHHHTTCSEEEEEESSSC---
T ss_pred             HHHHHHHHHHCCCEEEECCCCCC---------HHHHH---------------------HHHHhcCCCEEEEEeechh---
Confidence            35577788899999999886543         23333                     4566678888888765332   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV  308 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v  308 (426)
                                .++.+.++++..|+.|. .+.+.    +|    +....+.+    ..+.+.|+|.++.+|+.    +.++
T Consensus        82 ----------~~~~~~~~i~~L~~~g~~~i~v~----vG----G~~~~~~~----~~l~~~G~d~v~~~~~~----~~~~  135 (161)
T 2yxb_A           82 ----------HLHLMKRLMAKLRELGADDIPVV----LG----GTIPIPDL----EPLRSLGIREIFLPGTS----LGEI  135 (161)
T ss_dssp             ----------HHHHHHHHHHHHHHTTCTTSCEE----EE----ECCCHHHH----HHHHHTTCCEEECTTCC----HHHH
T ss_pred             ----------hHHHHHHHHHHHHhcCCCCCEEE----Ee----CCCchhcH----HHHHHCCCcEEECCCCC----HHHH
Confidence                      24556777778888774 23211    22    22223332    34668999998888773    3344


Q ss_pred             HHHHHHH
Q 014369          309 VPMLEAV  315 (426)
Q Consensus       309 ~~li~~l  315 (426)
                      .++++.+
T Consensus       136 ~~~~~~~  142 (161)
T 2yxb_A          136 IEKVRKL  142 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=84.85  E-value=20  Score=34.83  Aligned_cols=15  Identities=27%  Similarity=0.233  Sum_probs=9.3

Q ss_pred             CCcccHHHHHHHHHh
Q 014369          367 SGNVATEDVVYMLSG  381 (426)
Q Consensus       367 aGNa~lEevv~~L~~  381 (426)
                      .+|..-+.++...+.
T Consensus       228 ~an~~P~~~~~l~~a  242 (315)
T 3si9_A          228 SSNVAPKLCAQLHAA  242 (315)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            566666766665553

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=84.84  E-value=9.5  Score=37.28  Aligned_cols=118  Identities=19%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCC------CCCC-
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------GAIP-  275 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~------~r~~-  275 (426)
                      +.++...++|+..||+.+-+.+.    . +   ...++.+.++++.||++|++|-..+=+.  +..|-.      -..+ 
T Consensus        31 d~~~ilk~~G~N~VRi~~w~~P~----~-g---~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~  102 (332)
T 1hjs_A           31 PLENILAANGVNTVRQRVWVNPA----D-G---NYNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDI  102 (332)
T ss_dssp             CHHHHHHHTTCCEEEEEECSSCT----T-C---TTSHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSH
T ss_pred             cHHHHHHHCCCCEEEEeeeeCCC----C-C---cCCHHHHHHHHHHHHHCCCEEEEEeccCCCcCCccccCCccccccch
Confidence            45677788999999997544332    0 1   1225677789999999999988654210  101110      0001 


Q ss_pred             -------HHHHHHHHHHHHhCC--CCEEEEcCC--CCCC-------CHHHHHHHH----HHHHHhc--CCceEEEEeCC
Q 014369          276 -------PSKVAYVAKELHDMG--CFEISLGDT--IGVG-------TPGTVVPML----EAVMAVV--PVEKLAVHLHD  330 (426)
Q Consensus       276 -------~~~l~~~~~~l~~~G--ad~I~l~DT--~G~~-------~P~~v~~li----~~l~~~~--p~~~i~~H~HN  330 (426)
                             .++..++++++.+.|  ++.+.+.-=  .|.+       ....+.+++    +.+|+..  |..++.+|..+
T Consensus       103 ~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~  181 (332)
T 1hjs_A          103 DNLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDN  181 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence                   234456677777776  556655431  1222       335555554    4466666  77678888876

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=84.83  E-value=5.1  Score=39.78  Aligned_cols=123  Identities=18%  Similarity=0.085  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee--cC-----------------------CCC-----C------CCCH--
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GC-----------------------PVE-----G------AIPP--  276 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f--g~-----------------------pd~-----~------r~~~--  276 (426)
                      ...++.++..+++++.++++|-++.+.|...-  +.                       |-+     +      ..+.  
T Consensus        73 i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~e  152 (363)
T 3l5l_A           73 IWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDD  152 (363)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHHH
T ss_pred             ecCHHHHHHHHHHHHHHHhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHHH
Confidence            33456788888999999999998887777531  00                       000     0      0122  


Q ss_pred             -----HHHHHHHHHHHhCCCCEEEEc-------------------CCCCCCCH---HHHHHHHHHHHHhcC-CceEEEEe
Q 014369          277 -----SKVAYVAKELHDMGCFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVP-VEKLAVHL  328 (426)
Q Consensus       277 -----~~l~~~~~~l~~~Gad~I~l~-------------------DT~G~~~P---~~v~~li~~l~~~~p-~~~i~~H~  328 (426)
                           +.+.+.++.+.++|.|.|-|-                   |-.|...-   .-+.++|+++++.++ +.+|++-.
T Consensus       153 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRi  232 (363)
T 3l5l_A          153 IARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARF  232 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence                 344556777788999988774                   33443222   235778899998886 44566644


Q ss_pred             CC----CcC-cHHHH----HHHHHHcCCCEEeecccCC
Q 014369          329 HD----TYG-QSLPN----ILISLQMGISTVDCSVAGL  357 (426)
Q Consensus       329 HN----d~G-lA~AN----aLaAl~aGa~~VD~Sv~Gl  357 (426)
                      .-    +-| .....    +-..-++|+++|+.+..+.
T Consensus       233 s~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~  270 (363)
T 3l5l_A          233 GVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFT  270 (363)
T ss_dssp             EEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             cchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence            31    113 22222    3334578999999987654

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=84.83  E-value=25  Score=33.89  Aligned_cols=109  Identities=15%  Similarity=0.115  Sum_probs=67.1

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +.++.+.+.|++.|.+....           .        .+.++.+++.|+++...+           .+++    .++
T Consensus        87 ~~~~~~~~~g~d~V~~~~g~-----------p--------~~~~~~l~~~gi~vi~~v-----------~t~~----~a~  132 (328)
T 2gjl_A           87 EYRAAIIEAGIRVVETAGND-----------P--------GEHIAEFRRHGVKVIHKC-----------TAVR----HAL  132 (328)
T ss_dssp             HHHHHHHHTTCCEEEEEESC-----------C--------HHHHHHHHHTTCEEEEEE-----------SSHH----HHH
T ss_pred             HHHHHHHhcCCCEEEEcCCC-----------c--------HHHHHHHHHcCCCEEeeC-----------CCHH----HHH
Confidence            56788899999999886532           1        144556677788775322           1233    345


Q ss_pred             HHHhCCCCEEEEcCC-C----CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEEeec
Q 014369          285 ELHDMGCFEISLGDT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCS  353 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT-~----G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~VD~S  353 (426)
                      .+.+.|+|.|.+-.. .    |...+. ...+++.+++.+.. +|.+=    -|.. -.|+.+++.+||+.|...
T Consensus       133 ~~~~~GaD~i~v~g~~~GG~~G~~~~~-~~~~l~~v~~~~~i-Pviaa----GGI~~~~~v~~al~~GAdgV~vG  201 (328)
T 2gjl_A          133 KAERLGVDAVSIDGFECAGHPGEDDIP-GLVLLPAAANRLRV-PIIAS----GGFADGRGLVAALALGADAINMG  201 (328)
T ss_dssp             HHHHTTCSEEEEECTTCSBCCCSSCCC-HHHHHHHHHTTCCS-CEEEE----SSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHcCCCEEEEECCCCCcCCCCcccc-HHHHHHHHHHhcCC-CEEEE----CCCCCHHHHHHHHHcCCCEEEEC
Confidence            677899999987332 1    221112 33677777776532 34332    3453 357778888999988765

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=84.80  E-value=13  Score=34.26  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=53.5

Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc----HHH
Q 014369          265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ----SLP  337 (426)
Q Consensus       265 ~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl----A~A  337 (426)
                      +.+.|.... ..+.....++.+.+.|+|.|-+.=-.|.   ..+..+.+.++++++..+...+-+ .-++-++    ...
T Consensus        59 v~~~P~g~~-~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKv-i~e~~~l~~~~~~~  136 (225)
T 1mzh_A           59 VIGFPLGLN-KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKV-IVETPYLNEEEIKK  136 (225)
T ss_dssp             EESTTTCCS-CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEE-ECCGGGCCHHHHHH
T ss_pred             EecCCCCcc-chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEE-EEeCCCCCHHHHHH
Confidence            345676543 3344344467788899999985333333   356788888999998774222222 1111222    344


Q ss_pred             HHHHHHHcCCCEEeecc
Q 014369          338 NILISLQMGISTVDCSV  354 (426)
Q Consensus       338 NaLaAl~aGa~~VD~Sv  354 (426)
                      -+..+.++||+.|.++-
T Consensus       137 ~a~~a~eaGad~I~tst  153 (225)
T 1mzh_A          137 AVEICIEAGADFIKTST  153 (225)
T ss_dssp             HHHHHHHHTCSEEECCC
T ss_pred             HHHHHHHhCCCEEEECC
Confidence            56777899999996655

>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*

Probab=84.66  E-value=10  Score=38.16  Aligned_cols=83  Identities=22%  Similarity=0.414  Sum_probs=46.0

Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH-------HHHHHHHHHhCCC---CEEEEcCC
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK-------VAYVAKELHDMGC---FEISLGDT  299 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~-------l~~~~~~l~~~Ga---d~I~l~DT  299 (426)
                      ..++|.+.+++.    ++++.+++.++++.+ |++-+|+.+.   +++.       +.++++.+.+.|.   ..+.++-.
T Consensus       184 ~~RfG~~~~e~~----~~~~~~~~~~l~l~G-l~~H~gs~~~---~~~~~~~~~~~~~~~~~~l~~~G~~~~~~l~~GGG  255 (419)
T 2plj_A          184 SKKFGCSPEQAL----VIIETAKEWNIRIKG-LSFHVGSQTT---NPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGG  255 (419)
T ss_dssp             CCCSCBCHHHHH----HHHHHHHHTTCEEEE-EECCCCTTCC---CTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCC
T ss_pred             CCCCcCCHHHHH----HHHHHHHhCCCcEEE-EEEECCCCCC---CHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEECCC
Confidence            456888877654    445566667888765 5544666542   2332       3334555556676   34544444


Q ss_pred             CCCC------CHHHHHHHHHHHHHhcC
Q 014369          300 IGVG------TPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       300 ~G~~------~P~~v~~li~~l~~~~p  320 (426)
                      .|..      .++...+.++.....+|
T Consensus       256 ~~~~y~~~~~~~~~~~~~vr~~i~~y~  282 (419)
T 2plj_A          256 FPVNYTQQVMPIDQFCAPINEALSLLP  282 (419)
T ss_dssp             CCCCSSSCCCCHHHHHHHHHHHHTTSC
T ss_pred             cCcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            4433      23566666666555555

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=84.65  E-value=3.5  Score=39.64  Aligned_cols=81  Identities=12%  Similarity=0.009  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      + .|.+.+.++++.+.+.|++.|.+.-|.|   .+++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++|
T Consensus        18 g-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~G   96 (291)
T 3a5f_A           18 G-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG   96 (291)
T ss_dssp             S-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             C-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcC
Confidence            5 9999999999999999999999999988   5788888899998887663 3455554 5677888889999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        97 adavlv~  103 (291)
T 3a5f_A           97 VDGLLVI  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=84.57  E-value=3.3  Score=39.81  Aligned_cols=81  Identities=19%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   +++++-.++++.+.+.... -|.=-++|+.--++..+..|-++||+
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~Gad   93 (288)
T 2nuw_A           15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDIL   93 (288)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999985   7788888999998887765 23335677888888999999999999


Q ss_pred             EEeec
Q 014369          349 TVDCS  353 (426)
Q Consensus       349 ~VD~S  353 (426)
                      .+=..
T Consensus        94 avlv~   98 (288)
T 2nuw_A           94 GVSSH   98 (288)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77554

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=84.57  E-value=5  Score=40.14  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      ..+.++.+.++|++.|.| ||... .|..+.+.|+.+++.+|+.++.+..    .....-+..++++|||.|.+.
T Consensus       109 ~~~~~~~lieaGvd~I~i-dta~G-~~~~~~~~I~~ik~~~p~v~Vi~G~----v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          109 NEERVKALVEAGVDVLLI-DSSHG-HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             CHHHHHHHHHTTCSEEEE-ECSCT-TSHHHHHHHHHHHHHCTTCEEEEEE----ECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHhCCCCEEEE-eCCCC-CCHHHHHHHHHHHHhcCCCceEeee----eCCHHHHHHHHHcCCCEEEEe
Confidence            345677888999998776 44432 5677888999999999876665531    123566788899999999983

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=84.53  E-value=2.9  Score=47.22  Aligned_cols=135  Identities=14%  Similarity=0.169  Sum_probs=75.9

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++++.++|+|.|.|-++.-....+..+|.......+.+.++++.+|+. +++|.+-+.     |+.     +.+.++++.
T Consensus       654 a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-----~~~-----~~~~~~a~~  723 (1025)
T 1gte_A          654 SRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-----PNV-----TDIVSIARA  723 (1025)
T ss_dssp             HHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-----SCS-----SCHHHHHHH
T ss_pred             HHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-----CCh-----HHHHHHHHH
Confidence            345557899988887642111112223332222344455666666654 677764442     222     246778889


Q ss_pred             HHhCCCCEEEEcCCC-------------------------CCCCHHH---HHHHHHHHHHhcCCceEEEEeCCCcCcHHH
Q 014369          286 LHDMGCFEISLGDTI-------------------------GVGTPGT---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLP  337 (426)
Q Consensus       286 l~~~Gad~I~l~DT~-------------------------G~~~P~~---v~~li~~l~~~~p~~~i~~H~HNd~GlA~A  337 (426)
                      +.++|+|.|.+..|.                         |+.-|..   ..++++.+++.++.++|-.=+-=..+   .
T Consensus       724 ~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~---~  800 (1025)
T 1gte_A          724 AKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSA---E  800 (1025)
T ss_dssp             HHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSH---H
T ss_pred             HHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCH---H
Confidence            999999999994331                         1212211   13678888888755555554433333   4


Q ss_pred             HHHHHHHcCCCEEeecc
Q 014369          338 NILISLQMGISTVDCSV  354 (426)
Q Consensus       338 NaLaAl~aGa~~VD~Sv  354 (426)
                      .+..++.+||+.|-..-
T Consensus       801 da~~~l~~Ga~~v~vg~  817 (1025)
T 1gte_A          801 SGLQFLHSGASVLQVCS  817 (1025)
T ss_dssp             HHHHHHHTTCSEEEESH
T ss_pred             HHHHHHHcCCCEEEEee
Confidence            45666678999876543

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}

Probab=84.51  E-value=40  Score=34.75  Aligned_cols=226  Identities=14%  Similarity=0.075  Sum_probs=128.4

Q ss_pred             CCCHHHHHHHHH-HHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc-CCCcEEEEeCChh---hHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIR-RLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLK---GFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~-~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~~~~---di~~a~~~Gv~~V  218 (426)
                      .++..++..|.. ...+.|++.|=+.|.-++      .|..++.+.+... ..+.+.+-.-+.+   .++..++. .|.|
T Consensus       178 ~lTekD~~dl~~~~~~~~~vD~Ia~SfVr~a------~Dv~~~r~~l~~~g~~~~iiaKIE~~eav~nldeIl~~-sDgI  250 (461)
T 3qtg_A          178 TPAEEDVEALKAISPIRDNIDYVAISLAKSC------KDVDSVRSLLTELGFQSQVAVKIETKGAVNNLEELVQC-SDYV  250 (461)
T ss_dssp             SSCHHHHHHHHHHGGGGGGCCEEEECSCCSH------HHHHHHHHHHHHTTCCCEEEEEECSHHHHHTHHHHHHT-CSEE
T ss_pred             CCCHHHHHHHHHHHHhhcCCCEEEecCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cccE
Confidence            456777666642 567789999988764332      2444444445432 2355555555544   44555554 5766


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCC-CCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~p-d~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .+.  -.|+-.+    ...++.....+++++.|+.+|..|.+. +.+.-+. ...+-+..++.+++.+.. .|+|.|-|.
T Consensus       251 mVa--RGDLgve----i~~e~v~~~Qk~ii~~~~~~gkpvi~A-TQMLeSMi~~p~PTRAEvsDVanAV~-dGaDavMLS  322 (461)
T 3qtg_A          251 VVA--RGDLGLH----YGLDALPIVQRRIVHTSLKYGKPIAVA-TQLLDSMQSSPIPTRAEINDVFTTAS-MGVDSLWLT  322 (461)
T ss_dssp             EEE--HHHHTTT----SCTTTHHHHHHHHHHHHHHTTCCEEEE-SSSSGGGGTCSSCCHHHHHHHHHHHH-TTCSEEEEC
T ss_pred             EEc--ccccccc----CCHHHHHHHHHHHHHHHHHhCCCEEEe-ccchHhhccCCCccHHHHHHHHHHHH-hCCcEEEEc
Confidence            665  2232111    234566667789999999999987621 1111111 112345677777776555 799999987


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCc--CcHHHHHHHHHHcCCCEEeecccCCC-----C-CCCCCCCCC
Q 014369          298 -DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY--GQSLPNILISLQMGISTVDCSVAGLG-----G-CPYAKGASG  368 (426)
Q Consensus       298 -DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~--GlA~ANaLaAl~aGa~~VD~Sv~GlG-----e-cP~a~graG  368 (426)
                       .|.-.-.|.+..+++..+....-...-.++...+.  ..|.|...+|-..+|.+|-.|-.|--     . .|-.|- -.
T Consensus       323 gETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~aia~aa~~~a~~~~a~Iv~~T~SG~tA~~vsr~RP~~pI-ia  401 (461)
T 3qtg_A          323 NETASGKYPLAAVSWLSRILMNVEYQIPQSPLLQNSRDRFAKGLVELAQDLGANILVFSMSGTLARRIAKFRPRGVV-YV  401 (461)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHTCCCCCCCCCCCCSHHHHHHHHHHHHHHHHTCEEEEECSSSHHHHHHHTTCCSSCE-EE
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHhcCCCEEEECCCcHHHHHHHhhCCCCCE-EE
Confidence             57777799999888888887653210011111122  23334445566778887777877732     1 111111 22


Q ss_pred             cccHHHHHHHHHhC-CCC
Q 014369          369 NVATEDVVYMLSGL-GVE  385 (426)
Q Consensus       369 Na~lEevv~~L~~l-G~~  385 (426)
                      -.+-+.+...|.-+ |+.
T Consensus       402 ~T~~~~~~r~l~l~~GV~  419 (461)
T 3qtg_A          402 GTPNVRVARSLSIVWALE  419 (461)
T ss_dssp             EESCHHHHHHHTTSTTEE
T ss_pred             eCCCHHHHhhceeccceE
Confidence            34557777777643 543

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=84.50  E-value=14  Score=36.90  Aligned_cols=103  Identities=13%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHh-----cCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC------------
Q 014369          239 DSLVRYRAVAHAAKV-----LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG------------  301 (426)
Q Consensus       239 e~l~~~~~~v~~Ak~-----~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G------------  301 (426)
                      +.+.++.+.++.+++     ..++|.+-+.     |+   .+.+.+.++++.+.++|+|.|.+-.|.-            
T Consensus       199 ~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~-----p~---~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~  270 (367)
T 3zwt_A          199 AELRRLLTKVLQERDGLRRVHRPAVLVKIA-----PD---LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRS  270 (367)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGCCEEEEEEC-----SC---CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTT
T ss_pred             HHHHHHHHHHHHHHhhccccCCceEEEEeC-----CC---CCHHHHHHHHHHHHHcCCCEEEEeCCCccccccccccccc
Confidence            445555555555432     3456654442     32   4567899999999999999999988751            


Q ss_pred             ---CCC----HHHHHHHHHHHHHhcC-CceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          302 ---VGT----PGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       302 ---~~~----P~~v~~li~~l~~~~p-~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                         .+.    +....++|+.+++.++ .++|-.=+-=.   ...-++.++++||+.|-.
T Consensus       271 ~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~---s~~da~~~l~~GAd~V~v  326 (367)
T 3zwt_A          271 ETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVS---SGQDALEKIRAGASLVQL  326 (367)
T ss_dssp             SSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCC---SHHHHHHHHHHTCSEEEE
T ss_pred             ccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCC---CHHHHHHHHHcCCCEEEE
Confidence               111    1223477888888874 33443322211   126677888899997754

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=84.46  E-value=4.1  Score=39.05  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCC
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa  347 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|.|=   +++++-.++++.+.+.... -|.=-++|+.--++..+..|-++||
T Consensus        13 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~Ga   91 (286)
T 2r91_A           13 GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGA   91 (286)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcCC
Confidence            35689999999999999999999999999985   7888999999999988765 2333567788888999999999999


Q ss_pred             CEEeec
Q 014369          348 STVDCS  353 (426)
Q Consensus       348 ~~VD~S  353 (426)
                      +.+=..
T Consensus        92 davlv~   97 (286)
T 2r91_A           92 EAVASL   97 (286)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            977554

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=84.42  E-value=2.3  Score=40.98  Aligned_cols=82  Identities=9%  Similarity=-0.033  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (292)
T 2ojp_A           17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   5788888899998887763 3455554 5667778888888899999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        97 adavlv~  103 (292)
T 2ojp_A           97 IVGCLTV  103 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977544

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=84.42  E-value=2.4  Score=37.98  Aligned_cols=74  Identities=15%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEE--eCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH--LHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H--~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      .+.+...++++.+.+ |++.|-+.|..  ..+ .-.++++.+++.+|+.++.+|  .|| -  .---+-.|.++||+.|.
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~--~~~-~g~~~i~~l~~~~~~~~i~~~l~~~d-i--~~~~~~~a~~~Gad~v~   82 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPL--IKA-EGLSVITAVKKAHPDKIVFADMKTMD-A--GELEADIAFKAGADLVT   82 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHH--HHH-HCTHHHHHHHHHSTTSEEEEEEEECS-C--HHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHH--HHh-hCHHHHHHHHHhCCCCeEEEEEEecC-c--cHHHHHHHHhCCCCEEE
Confidence            467888889988887 88998885532  122 223568888888765555554  454 1  11123568899999886


Q ss_pred             ecc
Q 014369          352 CSV  354 (426)
Q Consensus       352 ~Sv  354 (426)
                      ...
T Consensus        83 vh~   85 (207)
T 3ajx_A           83 VLG   85 (207)
T ss_dssp             EET
T ss_pred             Eec
Confidence            543

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}

Probab=84.33  E-value=11  Score=35.70  Aligned_cols=162  Identities=22%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC-------CCC---CH-------HHHHHHHHHHHhCCCCEEEEcCC
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-------GAI---PP-------SKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~-------~r~---~~-------~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      ++++++.+++.++.|+++|.+..+..   .|.+..       .+.   ..       +.+.++++.+.+.|+ .|.|--.
T Consensus       106 r~~~~~~~~~~i~~A~~lGa~~v~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~  181 (340)
T 2zds_A          106 RQRAAAEIKDTARAAARLGVDTVIGF---TGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGV-RFAHEVH  181 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEEEC---CCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEe---cCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCC-EEEEEcC
Confidence            45678899999999999999864311   222110       000   01       234445556666787 4555444


Q ss_pred             CC--CCCHHHHHHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCCEEeeccc--------CC-------CC
Q 014369          300 IG--VGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGISTVDCSVA--------GL-------GG  359 (426)
Q Consensus       300 ~G--~~~P~~v~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~--------Gl-------Ge  359 (426)
                      .+  ..++.++.++++.+-. -|.+.+.+   |.+- .|.-....+..+.-=+..|+..=.        |+       |.
T Consensus       182 ~~~~~~~~~~~~~ll~~v~~-~~~vg~~~D~~H~~~-~g~d~~~~l~~~~~~i~~vHl~D~~~~~~~~~g~~~~~~~~~~  259 (340)
T 2zds_A          182 PSEIAYDYWTTHRALEAVGH-RPAFGLNFDPSHFVW-QDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGD  259 (340)
T ss_dssp             TTSSCCSHHHHHHHHHHTTT-CTTEEEEECCHHHHH-TTCCHHHHHHHTGGGEEEEEECEEEECCCSSSCTTCTTCCTTC
T ss_pred             CCcccCCHHHHHHHHHhcCC-CCCeeEEEchhhHHH-hCCCHHHHHHHHHhhEEEEEeccCccccccccccccccCCccc
Confidence            33  3577777776665530 13222222   3221 122233333333222344444322        11       00


Q ss_pred             -----CCCCCCCCCcccHHHHHHHHHhCCCCCCc---------C-hhhHHHHHHHHHHHhC
Q 014369          360 -----CPYAKGASGNVATEDVVYMLSGLGVETNV---------D-LRKLMLAGDFINKHLG  405 (426)
Q Consensus       360 -----cP~a~graGNa~lEevv~~L~~lG~~~~i---------D-l~~L~~la~~v~~~~g  405 (426)
                           -...+| .|..+...++..|+..|++.-+         | .+.+....+++.+.+.
T Consensus       260 ~~r~~~~~~~G-~G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~s~~~l~~~~~  319 (340)
T 2zds_A          260 PRRGWDFVSAG-HGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDF  319 (340)
T ss_dssp             TTSSEEEECTT-SSCCCHHHHHHHHHHTTCCSCEEECCCCTTSCHHHHHHHHHHHHHTTCC
T ss_pred             ccccceecCCC-CCccCHHHHHHHHHhcCCCccEEEEeeCCCcCHHHHHHHHHHHHHHHHh
Confidence                 001244 6899999999999987764221         1 2344555555555543

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=84.24  E-value=3.9  Score=39.46  Aligned_cols=32  Identities=28%  Similarity=0.588  Sum_probs=14.1

Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          344 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       344 ~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      +.|.. |.+.+.=...||+.    |-.+.|.++..++
T Consensus       135 ~~G~~-V~~~l~~~~~~e~~----~~~~~~~~~~~~~  166 (302)
T 2ftp_A          135 QHQVR-VRGYISCVLGCPYD----GDVDPRQVAWVAR  166 (302)
T ss_dssp             HTTCE-EEEEEECTTCBTTT----BCCCHHHHHHHHH
T ss_pred             HCCCe-EEEEEEEEeeCCcC----CCCCHHHHHHHHH
Confidence            34443 44444443445543    2344455444444

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=84.10  E-value=13  Score=41.91  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc----CC-----CCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLG----DT-----IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~----DT-----~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+++.+.++++.+.++|+|.|.|-    -+     .|.   -.|..+.++++.+++.+. .+|.+-.--+.--...-+.+
T Consensus       645 ~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~-~Pv~vK~~~~~~~~~~~a~~  723 (1025)
T 1gte_A          645 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQ-IPFFAKLTPNVTDIVSIARA  723 (1025)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCS-SCEEEEECSCSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhC-CceEEEeCCChHHHHHHHHH
Confidence            467899999999999999988882    22     122   468889999999999874 35666554454445666888


Q ss_pred             HHHcCCCEEee
Q 014369          342 SLQMGISTVDC  352 (426)
Q Consensus       342 Al~aGa~~VD~  352 (426)
                      +.++|++.|.+
T Consensus       724 ~~~~G~d~i~v  734 (1025)
T 1gte_A          724 AKEGGADGVTA  734 (1025)
T ss_dssp             HHHHTCSEEEE
T ss_pred             HHHcCCCEEEE
Confidence            88999999988

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=84.07  E-value=2.9  Score=39.71  Aligned_cols=166  Identities=16%  Similarity=0.083  Sum_probs=0.0

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CChh----hHHHHHHc-CCCEEEEeccC
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLK----GFEAAIAA-GAKEVAIFASA  224 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~~~----di~~a~~~-Gv~~V~i~~~~  224 (426)
                      ...+.|++.|.+.||+|.+-+ +  |.-...+.+++.+++....-+.-..  .+.+    -++.+.++ |.+.|.+.+..
T Consensus        27 ~~~~~l~~~Gad~ielg~pr~-~--~~g~~~~~~~~~l~~~~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~  103 (264)
T 1xm3_A           27 IQKEAVAVSESDILTFAVRRM-N--IFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIG  103 (264)
T ss_dssp             HHHHHHHHHTCSEEEEETTSS-T--TC-------CTTCCGGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBC
T ss_pred             HHHHHHHHcCCeEEEEccccc-c--cCCCCHHHHHHHHHhcCCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecC


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-cCCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-GDTI  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l-~DT~  300 (426)
                      ...           ..++...+.++.++++   |+.+........              +.++++.++|++.|.. .-.+
T Consensus       104 d~~-----------~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~--------------~~a~~~~~~gad~v~~~~~~~  158 (264)
T 1xm3_A          104 CSR-----------SLLPDPVETLKASEQLLEEGFIVLPYTSDDV--------------VLARKLEELGVHAIMPGASPI  158 (264)
T ss_dssp             CTT-----------TCCBCHHHHHHHHHHHHHTTCCEEEEECSCH--------------HHHHHHHHHTCSCBEECSSST
T ss_pred             CCc-----------ccccchHHHHHHHHHHHCCCeEEEEEcCCCH--------------HHHHHHHHhCCCEEEECCccc


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 014369          301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  350 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V  350 (426)
                      |......-.++++.+++ ..+.++.+-+    |.. ..++..++++||+.|
T Consensus       159 Gt~~~~~~~~~l~~i~~-~~~iPviv~g----GI~t~eda~~~~~~GAdgV  204 (264)
T 1xm3_A          159 GSGQGILNPLNLSFIIE-QAKVPVIVDA----GIGSPKDAAYAMELGADGV  204 (264)
T ss_dssp             TCCCCCSCHHHHHHHHH-HCSSCBEEES----CCCSHHHHHHHHHTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHh-cCCCCEEEEe----CCCCHHHHHHHHHcCCCEE

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=84.07  E-value=11  Score=39.88  Aligned_cols=130  Identities=17%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEe-CChhhHHHHHHcCCCEEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT-PNLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~~~~di~~a~~~Gv~~V~i  220 (426)
                      ..++-.+-+++|.++|++.|-+-.        .....+.+++.++.+    |++.+.+-. .+.+..+..+++|+|.|.+
T Consensus       278 v~~d~~eR~~aLv~AGvD~iviD~--------ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkV  349 (556)
T 4af0_A          278 TRPGDKDRLKLLAEAGLDVVVLDS--------SQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRI  349 (556)
T ss_dssp             SSHHHHHHHHHHHHTTCCEEEECC--------SCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred             cCccHHHHHHHHHhcCCcEEEEec--------cccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEee


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      -+...-+-.....------.+..+.++.++|++.|++|.+         |.+-..+.++++..    .+|||.+-+
T Consensus       350 GiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIA---------DGGI~~sGDi~KAl----aaGAd~VMl  412 (556)
T 4af0_A          350 GMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIA---------DGGIGNIGHIAKAL----ALGASAVMM  412 (556)
T ss_dssp             CSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHHHHHH----HTTCSEEEE
T ss_pred             cCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEe---------cCCcCcchHHHHHh----hcCCCEEEE

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=84.05  E-value=11  Score=35.55  Aligned_cols=152  Identities=13%  Similarity=0.120  Sum_probs=82.9

Q ss_pred             hHHHHHHcCCCEEEEeccCChHH-----Hhh------hcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCC
Q 014369          206 GFEAAIAAGAKEVAIFASASEAF-----SKS------NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~-----~~~------~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~  272 (426)
                      .++...+.|+|.|.+-++.||..     .+.      ..|.+.    +...+.++..|+.  .+++.  ++.-+ .|. .
T Consensus        36 ~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~----~~~~~~v~~ir~~~~~~Pv~--lm~y~-n~v-~  107 (268)
T 1qop_A           36 IIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTP----AQCFEMLAIIREKHPTIPIG--LLMYA-NLV-F  107 (268)
T ss_dssp             HHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHCSSSCEE--EEECH-HHH-H
T ss_pred             HHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCCCCCEE--EEEcc-cHH-H
Confidence            45666788999999999887642     110      112232    2334566666666  45543  22101 110 0


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+.   +.++++.+.++|+|.|.+.|-.    ++++.++++.++++--. .+-+-.+++.- ...-.++....|.-++ .
T Consensus       108 ~~g---~~~~~~~~~~aGadgii~~d~~----~e~~~~~~~~~~~~g~~-~i~l~~p~t~~-~~i~~i~~~~~g~v~~-~  177 (268)
T 1qop_A          108 NNG---IDAFYARCEQVGVDSVLVADVP----VEESAPFRQAALRHNIA-PIFICPPNADD-DLLRQVASYGRGYTYL-L  177 (268)
T ss_dssp             TTC---HHHHHHHHHHHTCCEEEETTCC----GGGCHHHHHHHHHTTCE-EECEECTTCCH-HHHHHHHHHCCSCEEE-E
T ss_pred             Hhh---HHHHHHHHHHcCCCEEEEcCCC----HHHHHHHHHHHHHcCCc-EEEEECCCCCH-HHHHHHHhhCCCcEEE-E
Confidence            111   1467778889999999999865    47788888888775321 13233333221 2233344444454333 3


Q ss_pred             cccCCCCCCCCCCC-CC-cccHHHHHHHHHh
Q 014369          353 SVAGLGGCPYAKGA-SG-NVATEDVVYMLSG  381 (426)
Q Consensus       353 Sv~GlGecP~a~gr-aG-Na~lEevv~~L~~  381 (426)
                      |+.|.++      . ++ ..++.+.+..++.
T Consensus       178 s~~G~tG------~~~~~~~~~~~~i~~lr~  202 (268)
T 1qop_A          178 SRSGVTG------AENRGALPLHHLIEKLKE  202 (268)
T ss_dssp             SSSSCCC------SSSCC--CCHHHHHHHHH
T ss_pred             ecCCcCC------CccCCCchHHHHHHHHHh
Confidence            7777765      2 11 1345667777776

>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6

Probab=84.00  E-value=11  Score=36.79  Aligned_cols=19  Identities=21%  Similarity=0.478  Sum_probs=16.2

Q ss_pred             CCcccHHHHHHHHHhCCCC
Q 014369          367 SGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       367 aGNa~lEevv~~L~~lG~~  385 (426)
                      .|..+...++..|+..|++
T Consensus       303 ~G~id~~~il~~L~~~gy~  321 (367)
T 1tz9_A          303 AGSLDMAELMQALVDVGYE  321 (367)
T ss_dssp             GSSSCHHHHHHHHHHHTCC
T ss_pred             CCCcCHHHHHHHHHHcCCC
Confidence            5889999999999986664

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=83.99  E-value=4.2  Score=39.10  Aligned_cols=82  Identities=10%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHc
Q 014369          272 GAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQM  345 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~a  345 (426)
                      +..|.+.+.++++.+.+ .|++.|.+.-|+|=   +++++-.++++.+.+... ..++-+| ++|+.--++..+..|-++
T Consensus        19 g~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~   98 (293)
T 1f6k_A           19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhc
Confidence            57899999999999999 99999999999885   788888999999887764 3455554 567888888899999999


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      ||+.+=..
T Consensus        99 Gadavlv~  106 (293)
T 1f6k_A           99 GYDCLSAV  106 (293)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=83.96  E-value=11  Score=36.05  Aligned_cols=63  Identities=19%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVPM  311 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~l  311 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...+  +++...|+ +.|+.+.+|
T Consensus        85 ai~la~~a~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L  151 (291)
T 3a5f_A           85 SIAMSKWAESIGVDGLL-----VITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKEL  151 (291)
T ss_dssp             HHHHHHHHHHTTCSEEE-----EECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence            34555666777766431     113443445666666666555443 33322  34444554 455555554

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=83.96  E-value=15  Score=33.70  Aligned_cols=114  Identities=14%  Similarity=0.040  Sum_probs=58.2

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH-------HH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-------SK  278 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~-------~~  278 (426)
                      -++.+.+.|++.|-+......       ... +   ..+.++.+.+++.|+++............. ..++       +.
T Consensus        22 ~l~~~~~~G~~~vEl~~~~~~-------~~~-~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~-~~d~~~r~~~~~~   89 (290)
T 2qul_A           22 TAKRIAGLGFDLMEISLGEFH-------NLS-D---AKKRELKAVADDLGLTVMCCIGLKSEYDFA-SPDKSVRDAGTEY   89 (290)
T ss_dssp             HHHHHHHTTCSEEEEESTTGG-------GSC-H---HHHHHHHHHHHHHTCEEEEEEEECGGGCTT-CSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEecCCcc-------ccc-h---hhHHHHHHHHHHcCCceEEecCCCCCCCCC-CCCHHHHHHHHHH
Confidence            456777788888888753211       001 1   234455666777888776422110000011 1122       45


Q ss_pred             HHHHHHHHHhCCCCEEEEcC--CCCC-------CCHHHHHHHHHHHHHhc-----CCceEEEEeCCC
Q 014369          279 VAYVAKELHDMGCFEISLGD--TIGV-------GTPGTVVPMLEAVMAVV-----PVEKLAVHLHDT  331 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~D--T~G~-------~~P~~v~~li~~l~~~~-----p~~~i~~H~HNd  331 (426)
                      +.+.++.+.++|+..|.+.=  ..|.       ........+++.+++..     -++.|.+|.|+.
T Consensus        90 ~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~  156 (290)
T 2qul_A           90 VKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNR  156 (290)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCT
T ss_pred             HHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCcc
Confidence            66677777778888776420  0122       23444444444444321     134688888874

>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}

Probab=83.85  E-value=5.9  Score=39.81  Aligned_cols=172  Identities=14%  Similarity=0.068  Sum_probs=102.5

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH----
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY----  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~----  281 (426)
                      -++.|.+.|.++|...+...+        -+.++.++++.+++++|+++|++|.+.|+            |..+.+    
T Consensus        22 yi~~a~~~Gf~~IFTSL~~~e--------~~~~~~~~~~~~l~~~a~~~g~~vi~DIs------------p~~l~~Lg~s   81 (372)
T 2p0o_A           22 YIKKMKALGFDGIFTSLHIPE--------DDTSLYRQRLTDLGAIAKAEKMKIMVDIS------------GEALKRAGFS   81 (372)
T ss_dssp             HHHHHHHTTCCEEEEEECCC-------------CHHHHHHHHHHHHHHHTCEEEEEEC------------HHHHHTTTCB
T ss_pred             HHHHHHHCCCCEEEccCCccC--------CChHHHHHHHHHHHHHHHHCCCEEEEECC------------HHHHHHcCCC
Confidence            367899999998877765333        13446688999999999999999987664            222222    


Q ss_pred             --HHHHHHhCCCCEEEEcCCCCCCCHHHHHHH-----------------HHHHHHhcCCceEEEEeCC-----CcCcHHH
Q 014369          282 --VAKELHDMGCFEISLGDTIGVGTPGTVVPM-----------------LEAVMAVVPVEKLAVHLHD-----TYGQSLP  337 (426)
Q Consensus       282 --~~~~l~~~Gad~I~l~DT~G~~~P~~v~~l-----------------i~~l~~~~p~~~i~~H~HN-----d~GlA~A  337 (426)
                        -.+.+.++|++.|+|=+..   ++.+++.|                 +..+++.-|+..--.=|||     ..||+..
T Consensus        82 ~~dl~~~~~lGi~glRLD~Gf---~~~eia~ls~nlkIeLNASti~~~~l~~l~~~~~n~~~l~a~HNFYPr~~TGLs~~  158 (372)
T 2p0o_A           82 FDELEPLIELGVTGLRMDYGI---TIEQMAHASHKIDIGLNASTITLEEVAELKAHQADFSRLEAWHNYYPRPETGIGTT  158 (372)
T ss_dssp             TTBCHHHHHHTCCEEEECSSC---CHHHHHHHHTTSEEEEETTTCCHHHHHHHHHTTCCGGGEEEECCCCCSTTCSBCHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCC---CHHHHHHHhcCCEEEEECccCCHHHHHHHHHcCCChHHeEEeeccCCCCCCCCCHH
Confidence              2345677899999998865   55665544                 5555554454322233455     5588775


Q ss_pred             HHHHH----HHcCCCEEeecccCCCCCCCCCCCCCcccHH---------HHHHHHHhCCCC------CCcChhhHHHHHH
Q 014369          338 NILIS----LQMGISTVDCSVAGLGGCPYAKGASGNVATE---------DVVYMLSGLGVE------TNVDLRKLMLAGD  398 (426)
Q Consensus       338 NaLaA----l~aGa~~VD~Sv~GlGecP~a~graGNa~lE---------evv~~L~~lG~~------~~iDl~~L~~la~  398 (426)
                      --+.-    -+.|.... +=|.|-++ .+.|=-.|.+.+|         .+...+...+++      ..+..+.|..+++
T Consensus       159 ~f~~~n~~~k~~Gi~t~-AFI~g~~~-~rGPl~eGLPTLE~HR~~~~~~~a~~L~~~~~iD~V~IGd~~~S~~el~~l~~  236 (372)
T 2p0o_A          159 FFNEKNRWLKELGLQVF-TFVPGDGQ-TRGPIFAGLPTLEKHRGQNPFAAAVGLMADPYVDAVYIGDPTISERTMAQFGY  236 (372)
T ss_dssp             HHHHHHHHHHHTTCEEE-EEECCSSS-CCTTTCSCCCSBGGGTTSCHHHHHHHHHHSTTCCEEEECSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcEE-EEecCCCc-cCCCccCCCCchHHhCCCCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHH
Confidence            54443    36676632 44444432 1111124666555         333333333554      4578888888888


Q ss_pred             HHHH
Q 014369          399 FINK  402 (426)
Q Consensus       399 ~v~~  402 (426)
                      ++.+
T Consensus       237 ~~~~  240 (372)
T 2p0o_A          237 YHQT  240 (372)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=83.85  E-value=4.8  Score=41.41  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE-Ec-CC----CCC--CCHHHHHHH
Q 014369          241 LVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS-LG-DT----IGV--GTPGTVVPM  311 (426)
Q Consensus       241 l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~-l~-DT----~G~--~~P~~v~~l  311 (426)
                      +..++++++.|++. ++-+. +    |+     -.+++.+..+++++.+.+...|. +. ..    .|+  ++|..+..+
T Consensus         5 l~~mkelL~~ak~g~~~gi~-a----v~-----~~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~   74 (450)
T 3txv_A            5 ENHLIDIARWSERPGPRGIP-S----IC-----SAHPLVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRF   74 (450)
T ss_dssp             ----------------CCEE-E----EC-----CCCHHHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCCcEEE-E----eC-----cCCHHHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHH
Confidence            34467888888872 22222 2    21     15789999999999999876443 33 22    233  468999999


Q ss_pred             HHHHHHhc--CCceEEEEeCCCcC---------------cHHHHHHHHHHcCCC--EEeecccCCCC
Q 014369          312 LEAVMAVV--PVEKLAVHLHDTYG---------------QSLPNILISLQMGIS--TVDCSVAGLGG  359 (426)
Q Consensus       312 i~~l~~~~--p~~~i~~H~HNd~G---------------lA~ANaLaAl~aGa~--~VD~Sv~GlGe  359 (426)
                      +..+.++.  |..+|.+|.  |-|               .+...+..|+++|.+  .||+|...+++
T Consensus        75 V~~~A~~~~vPv~pV~Lhl--DHg~~~~w~~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~ee  139 (450)
T 3txv_A           75 VGAIADRIEFPREKILLGG--DHLGPNPWKHLPADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGE  139 (450)
T ss_dssp             HHHHHHHTTCCGGGEEEEE--EEESSGGGTTSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSS
T ss_pred             HHHHHHHcCcCcccEEEEC--CCCCCcccccccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhh
Confidence            99887764  533466655  333               257888899999999  67999999887

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=83.83  E-value=17  Score=34.33  Aligned_cols=114  Identities=8%  Similarity=0.009  Sum_probs=66.4

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee-----cCCCC------C-
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV-----GCPVE------G-  272 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f-----g~pd~------~-  272 (426)
                      +-++.+.++|.+.|-++... +.   ...+.+       +.++.+.++++|+++.. +...+     ..|+.      . 
T Consensus        33 ~~l~~~a~~G~~~VEl~~~~-~~---~~~~~~-------~~~~~~~l~~~GL~v~~-~~~~~~~~~~~~p~~~~~~~~~~  100 (303)
T 3l23_A           33 ANLRKVKDMGYSKLELAGYG-KG---AIGGVP-------MMDFKKMAEDAGLKIIS-SHVNPVDTSISDPFKAMIFKYSK  100 (303)
T ss_dssp             HHHHHHHHTTCCEEEECCEE-TT---EETTEE-------HHHHHHHHHHTTCEEEE-EECCCBCTTCSSTTTTBCCSCCT
T ss_pred             HHHHHHHHcCCCEEEecccc-Cc---ccCCCC-------HHHHHHHHHHcCCeEEE-EecccccccccCcccccccccch
Confidence            34678888999999997521 10   011112       23555667889998753 22111     11111      0 


Q ss_pred             ---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-----CCce--EEEEeCC
Q 014369          273 ---AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-----PVEK--LAVHLHD  330 (426)
Q Consensus       273 ---r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-----p~~~--i~~H~HN  330 (426)
                         ....+.+.+.++.+.++|+..|.+.-......+.....+++.+++..     -++.  |.+|-|+
T Consensus       101 ~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~  168 (303)
T 3l23_A          101 EVTPKIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN  168 (303)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence               01135667788888899999998863211245666666666555432     2468  9999997

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=83.82  E-value=3.5  Score=39.76  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   +++++-.++++.+.+.... -|.=-++|+.--++..+..|-++||+
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~~Gad   93 (293)
T 1w3i_A           15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFDIV   93 (293)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGGSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999885   7888889999999888765 24335677888888889999999999


Q ss_pred             EEeec
Q 014369          349 TVDCS  353 (426)
Q Consensus       349 ~VD~S  353 (426)
                      .+=..
T Consensus        94 avlv~   98 (293)
T 1w3i_A           94 GIASY   98 (293)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            77554

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=83.82  E-value=15  Score=36.98  Aligned_cols=119  Identities=11%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC---------------CCC-----------------CCCCH--------
Q 014369          237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE-----------------GAIPP--------  276 (426)
Q Consensus       237 ~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~---------------pd~-----------------~r~~~--------  276 (426)
                      .++.++..+++++.+++.|-++.+.|... |-               |-+                 ....|        
T Consensus        88 ~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI  166 (402)
T 2hsa_B           88 TKEQVREWKKIVDVVHAKGAVIFCQLWHV-GRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEI  166 (402)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHH
Confidence            45667778888889999998888778641 10               000                 00123        


Q ss_pred             ----HHHHHHHHHHHhCCCCEEEEc-------------------CCCCCCC---HHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369          277 ----SKVAYVAKELHDMGCFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHD  330 (426)
Q Consensus       277 ----~~l~~~~~~l~~~Gad~I~l~-------------------DT~G~~~---P~~v~~li~~l~~~~p~~~i~~H~HN  330 (426)
                          +.+.+.++.+.++|.|.|-|-                   |-.|...   +.-+.++|+++++.++..+|.+-..-
T Consensus       167 ~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~  246 (402)
T 2hsa_B          167 SQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSP  246 (402)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecc
Confidence                577778888999999988763                   3334332   34478889999999873378887553


Q ss_pred             C-------cCc----HHHHHHHHHHcC------CCEEeecccC
Q 014369          331 T-------YGQ----SLPNILISLQMG------ISTVDCSVAG  356 (426)
Q Consensus       331 d-------~Gl----A~ANaLaAl~aG------a~~VD~Sv~G  356 (426)
                      +       .|.    ++.-+...-++|      +++|+.+-..
T Consensus       247 ~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~  289 (402)
T 2hsa_B          247 AIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR  289 (402)
T ss_dssp             SCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCC
T ss_pred             ccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCc
Confidence            2       122    233333444788      9999997543

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=83.76  E-value=31  Score=32.96  Aligned_cols=138  Identities=15%  Similarity=0.054  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+++.+.+.++.+.+.|+..|.|.+-- -.+.+..+.++++.+++.  .  +.++.++. .+--.....-.++|++.+..
T Consensus        84 ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~--~--~~i~~s~g-~l~~e~l~~L~~ag~~~v~i  158 (348)
T 3iix_A           84 MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKM--G--VAVTLSLG-EWPREYYEKWKEAGADRYLL  158 (348)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTT--S--CEEEEECC-CCCHHHHHHHHHHTCCEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhc--C--ceEEEecC-CCCHHHHHHHHHhCCCEEee
Confidence            478999999999999999999996433 223447888999998876  2  44444332 23333444445679999988


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHH---hCCCCC---------CcChhhHHHHHHHHHHHh--CCCCCCCCcccch
Q 014369          353 SVAGLGGCPYAKGASGNVATEDVVYMLS---GLGVET---------NVDLRKLMLAGDFINKHL--GRPSGSKTAIALN  417 (426)
Q Consensus       353 Sv~GlGecP~a~graGNa~lEevv~~L~---~lG~~~---------~iDl~~L~~la~~v~~~~--g~~~~~~~pivG~  417 (426)
                      ++-+.-.=-+..- .+..+.++++..++   ..|++.         +-+.+.+.++.+++.+.-  .+.+.+..|+-|.
T Consensus       159 ~let~~~~~~~~i-~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt  236 (348)
T 3iix_A          159 RHETANPVLHRKL-RPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDT  236 (348)
T ss_dssp             CCBCSCHHHHHHH-STTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTS
T ss_pred             eeeeCCHHHHHHh-CCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCC
Confidence            7776521000000 11126677766665   356542         235667777777776641  1333444444443

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=83.73  E-value=15  Score=35.66  Aligned_cols=63  Identities=8%  Similarity=-0.050  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPML  312 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad~I~l~DT~G~~~P~~v~~li  312 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.+ .+...+.+- ..|++.|+.+.+|.
T Consensus        95 ai~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn-~tg~l~~~~~~~La  158 (314)
T 3d0c_A           95 AIELGKSAIDSGADCVM-----IHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF-KDAHLSDDVIKELA  158 (314)
T ss_dssp             HHHHHHHHHHTTCSEEE-----ECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE-CCTTSCTHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe-CCCCcCHHHHHHHH
Confidence            44666778888887431     12455445677777777766554 466655555 77876667666663

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=83.71  E-value=7  Score=36.27  Aligned_cols=89  Identities=8%  Similarity=-0.036  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCce
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK  323 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~  323 (426)
                      ..++.+..++.++...      +     ...+++.+.++++++.+.|++.|.+-..    +| ...+.++.+++.+|...
T Consensus        16 ~~~~~~~l~~~~ii~V------~-----r~~~~~~~~~~~~al~~gGv~~iel~~k----~~-~~~~~i~~l~~~~~~~~   79 (225)
T 1mxs_A           16 AARIDAICEKARILPV------I-----TIAREEDILPLADALAAGGIRTLEVTLR----SQ-HGLKAIQVLREQRPELC   79 (225)
T ss_dssp             HHHHHHHHHHHSEEEE------E-----CCSCGGGHHHHHHHHHHTTCCEEEEESS----ST-HHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHCCEEEE------E-----eCCCHHHHHHHHHHHHHCCCCEEEEecC----Cc-cHHHHHHHHHHhCcccE
Confidence            3345555666675432      1     1236678889999999999999998865    33 34567888999998765


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          324 LAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       324 i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      ++...   . +-.-.+-.|+++||+.|++
T Consensus        80 igagt---v-l~~d~~~~A~~aGAd~v~~  104 (225)
T 1mxs_A           80 VGAGT---V-LDRSMFAAVEAAGAQFVVT  104 (225)
T ss_dssp             EEEEC---C-CSHHHHHHHHHHTCSSEEC
T ss_pred             EeeCe---E-eeHHHHHHHHHCCCCEEEe
Confidence            55543   3 3447888999999999974

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=83.69  E-value=7.8  Score=37.32  Aligned_cols=75  Identities=12%  Similarity=0.094  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcC-CC--C---CCCHHHHHH---HHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGD-TI--G---VGTPGTVVP---MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  344 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~D-T~--G---~~~P~~v~~---li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~  344 (426)
                      .+++.+.+.++.+.+.|||.|-|.= +.  |   +...+++.+   .|+.+++.  +.+|.++..+     ..-+.+|++
T Consensus        26 ~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT~~-----~~va~aAl~   98 (280)
T 1eye_A           26 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDTMR-----ADVARAALQ   98 (280)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEECSC-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeCCC-----HHHHHHHHH
Confidence            4789999999999999999998873 21  1   222344444   45555443  4578887755     355678899


Q ss_pred             cCCCEEeeccc
Q 014369          345 MGISTVDCSVA  355 (426)
Q Consensus       345 aGa~~VD~Sv~  355 (426)
                      +|+++|+-.-+
T Consensus        99 aGa~iINdvsg  109 (280)
T 1eye_A           99 NGAQMVNDVSG  109 (280)
T ss_dssp             TTCCEEEETTT
T ss_pred             cCCCEEEECCC
Confidence            99999965443

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=83.66  E-value=11  Score=37.29  Aligned_cols=114  Identities=13%  Similarity=0.093  Sum_probs=72.6

Q ss_pred             hHHHHhhcCCCCccEE-EeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc
Q 014369          114 DITNKFLKGIPRFVKI-VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL  192 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~I-~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~  192 (426)
                      .+...+++..+ .+.| +|     ..    ..++.++-+++++.|.+.|++.||-.++  +      .| .+..+.+++.
T Consensus       179 e~v~avr~a~g-d~~l~vD-----~n----~~~~~~~a~~~~~~l~~~~i~~iEqP~~--~------~~-~~~~~~l~~~  239 (384)
T 2pgw_A          179 EITAAVRGEIG-DARLRLD-----AN----EGWSVHDAINMCRKLEKYDIEFIEQPTV--S------WS-IPAMAHVREK  239 (384)
T ss_dssp             HHHHHHHTTST-TCEEEEE-----CT----TCCCHHHHHHHHHHHGGGCCSEEECCSC--T------TC-HHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CcEEEEe-----cC----CCCCHHHHHHHHHHHHhcCCCEEeCCCC--h------hh-HHHHHHHHhh
Confidence            45566666666 4433 33     33    2468899999999999999999995431  1      23 3344455533


Q ss_pred             CCCcEEEE--eCChhhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          193 EGARLPVL--TPNLKGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       193 ~~~~l~~l--~~~~~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      .++.+.+-  +.+..+++.+++.| +|.|.+=..             .-..+....++++.|+++|+.+.
T Consensus       240 ~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~-------------~~GGit~~~~i~~~A~~~g~~~~  296 (384)
T 2pgw_A          240 VGIPIVADQAAFTLYDVYEICRQRAADMICIGPR-------------EIGGIQPMMKAAAVAEAAGLKIC  296 (384)
T ss_dssp             CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH-------------HHTSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch-------------hhCCHHHHHHHHHHHHHCCCeEe
Confidence            33443331  23678899888876 677777321             01125566788999999999876

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=83.59  E-value=12  Score=38.31  Aligned_cols=128  Identities=15%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEE-EEeCChhhHHHHHHcCCCEEEEeccCC-
Q 014369          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLP-VLTPNLKGFEAAIAAGAKEVAIFASAS-  225 (426)
Q Consensus       149 ~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~-~l~~~~~di~~a~~~Gv~~V~i~~~~S-  225 (426)
                      ...+.++.|.++|++.|++.+....   +  ....+.++.+++ .++..+. ..+.+.++.+.+.++|+|.|.+..... 
T Consensus       237 ~~~~~a~~l~~aGvd~v~i~~~~G~---~--~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~  311 (494)
T 1vrd_A          237 ETMERVEKLVKAGVDVIVIDTAHGH---S--RRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGS  311 (494)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCCS---S--HHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCST
T ss_pred             hHHHHHHHHHHhCCCEEEEEecCCc---h--HHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCc
Confidence            3456788899999999999643210   1  123455566653 4455443 234567888999999999999853221 


Q ss_pred             --hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          226 --EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       226 --d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                        ........+...-++   +..+.+.+++.+++|.+         +.+-.++..+.++.    ++||+.+.++
T Consensus       312 ~~~~~~~~~~g~p~~~~---l~~v~~~~~~~~ipvia---------~GGI~~~~di~kal----a~GAd~V~iG  369 (494)
T 1vrd_A          312 ICTTRVVAGVGVPQLTA---VMECSEVARKYDVPIIA---------DGGIRYSGDIVKAL----AAGAESVMVG  369 (494)
T ss_dssp             TCHHHHHHCCCCCHHHH---HHHHHHHHHTTTCCEEE---------ESCCCSHHHHHHHH----HTTCSEEEES
T ss_pred             cccccccCCCCccHHHH---HHHHHHHHhhcCCCEEE---------ECCcCCHHHHHHHH----HcCCCEEEEC
Confidence              011111223333333   34444555556777652         23444666655433    5798887765

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=83.39  E-value=2.1  Score=41.49  Aligned_cols=82  Identities=7%  Similarity=0.113  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+... .++|-+| ++|+.--++..+..|-++|
T Consensus        20 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G   99 (300)
T 3eb2_A           20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG   99 (300)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   788888999999888763 3455554 5788899999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=+.
T Consensus       100 adavlv~  106 (300)
T 3eb2_A          100 ADGILAI  106 (300)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9987553

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=83.30  E-value=3.3  Score=40.22  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEE-eCCCcCcHHHHHHHHHHc
Q 014369          271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQM  345 (426)
Q Consensus       271 ~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H-~HNd~GlA~ANaLaAl~a  345 (426)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..+|-++ ++|+.--++..+..|-++
T Consensus        27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~  106 (306)
T 1o5k_A           27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKL  106 (306)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999988   5788888899998887753 3455554 567788888899999999


Q ss_pred             CCCEEeec
Q 014369          346 GISTVDCS  353 (426)
Q Consensus       346 Ga~~VD~S  353 (426)
                      ||+.+=..
T Consensus       107 Gadavlv~  114 (306)
T 1o5k_A          107 GANGVLVV  114 (306)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=83.29  E-value=20  Score=33.49  Aligned_cols=140  Identities=13%  Similarity=0.101  Sum_probs=83.1

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      ++.+.+.|++-|-+.    +            ..+ .+.+   ..+.. ++++.    .+.|.|... .+.+....-++.
T Consensus        42 ~~~a~~~~~~aVcv~----p------------~~v-~a~~---~l~~~~~v~v~----tvigFP~G~-~~~~~k~~e~~~   96 (234)
T 1n7k_A           42 VREASDYGFRCAVLT----P------------VYT-VKIS---GLAEKLGVKLC----SVIGFPLGQ-APLEVKLVEAQT   96 (234)
T ss_dssp             HHHHHHHTCSEEEEC----H------------HHH-HHHH---HHHHHHTCCEE----EEESTTTCC-SCHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEc----h------------HHh-eeeh---HhCCCCCceEE----EEeCCCCCC-CcHHHHHHHHHH
Confidence            356677888887764    2            112 2222   22233 45543    344667643 455655566788


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC--ceE----EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKL----AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~--~~i----~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +.+.|||.|-+.=-.|...- .+.+-+..+++..+.  .++    +....++-- =.-.+..|.++|||+|=+|-+ .+ 
T Consensus        97 Av~~GAdEID~vinig~~~~-~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~-i~~a~ria~eaGADfVKTsTG-~~-  172 (234)
T 1n7k_A           97 VLEAGATELDVVPHLSLGPE-AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKT-LSLLVDSSRRAGADIVKTSTG-VY-  172 (234)
T ss_dssp             HHHHTCCEEEECCCGGGCHH-HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHH-HHHHHHHHHHTTCSEEESCCS-SS-
T ss_pred             HHHcCCCEEEEeccchHHHH-HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHH-HHHHHHHHHHhCCCEEEeCCC-CC-
Confidence            88899999998877887766 777777777765321  222    222222211 223455678999999988853 22 


Q ss_pred             CCCCCCCCCcccHHHHHH--HHHh
Q 014369          360 CPYAKGASGNVATEDVVY--MLSG  381 (426)
Q Consensus       360 cP~a~graGNa~lEevv~--~L~~  381 (426)
                            .+|++..|++-.  +.+.
T Consensus       173 ------~~~gAt~~dv~l~~m~~~  190 (234)
T 1n7k_A          173 ------TKGGDPVTVFRLASLAKP  190 (234)
T ss_dssp             ------CCCCSHHHHHHHHHHHGG
T ss_pred             ------CCCCCCHHHHHHHHHHHH
Confidence                  125677777666  5543

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=83.21  E-value=14  Score=35.18  Aligned_cols=79  Identities=14%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHHHHhCCCC-EEEEc----CCCC---C-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc--HHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCF-EISLG----DTIG---V-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ--SLPNILIS  342 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad-~I~l~----DT~G---~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl--A~ANaLaA  342 (426)
                      .+++.+.+.++.+.++|+| .|.|-    -+-|   + ..|+.+.++++++++... .+|.+-.--++..  ...-+..+
T Consensus       103 ~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~-~Pv~vKi~~~~~~~~~~~~a~~~  181 (311)
T 1jub_A          103 MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFT-KPLGVKLPPYFDLVHFDIMAEIL  181 (311)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCC-SCEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHH
Confidence            3688999999999999999 77662    2211   2 388999999999998764 3566654433321  11225566


Q ss_pred             HHcCCCEEeec
Q 014369          343 LQMGISTVDCS  353 (426)
Q Consensus       343 l~aGa~~VD~S  353 (426)
                      .++|++.|.++
T Consensus       182 ~~~G~d~i~v~  192 (311)
T 1jub_A          182 NQFPLTYVNSV  192 (311)
T ss_dssp             TTSCCCEEEEC
T ss_pred             HHcCCcEEEec
Confidence            78899988764

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=83.17  E-value=5.5  Score=38.70  Aligned_cols=74  Identities=12%  Similarity=0.057  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcC--CCCCCCH--HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~D--T~G~~~P--~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                      .+.+.-.++++.|.++|++.|-+.=  +.. ..|  .+..++++.+.+. +..++.++.-|     ....-.|+++|++.
T Consensus        25 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~p~~~d~~~~~~~~~~~-~~~~~~~l~~~-----~~~i~~a~~~g~~~   97 (307)
T 1ydo_A           25 IATEDKITWINQLSRTGLSYIEITSFVHPK-WIPALRDAIDVAKGIDRE-KGVTYAALVPN-----QRGLENALEGGINE   97 (307)
T ss_dssp             CCHHHHHHHHHHHHTTTCSEEEEEECSCTT-TCGGGTTHHHHHHHSCCC-TTCEEEEECCS-----HHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCcCcc-cccccCCHHHHHHHhhhc-CCCeEEEEeCC-----HHhHHHHHhCCcCE
Confidence            4566777777777777777666631  000 011  1222333333322 45556666543     33456666777776


Q ss_pred             Eeecc
Q 014369          350 VDCSV  354 (426)
Q Consensus       350 VD~Sv  354 (426)
                      |...+
T Consensus        98 v~i~~  102 (307)
T 1ydo_A           98 ACVFM  102 (307)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66543

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=83.07  E-value=15  Score=35.30  Aligned_cols=63  Identities=14%  Similarity=-0.044  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHHH
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVPM  311 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~l  311 (426)
                      ..+.++.|++.|.....     .-.|.-.+.+.+.+.+..+.+.++ +...+  +++...|+ +.|+.+.+|
T Consensus        84 ai~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L  150 (297)
T 2rfg_A           84 AVRYAQHAQQAGADAVL-----CVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARL  150 (297)
T ss_dssp             HHHHHHHHHHHTCSEEE-----ECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence            34556667777776431     124544455667666666655543 43322  34555564 455555555

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=82.98  E-value=20  Score=36.88  Aligned_cols=128  Identities=11%  Similarity=0.084  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHh-cCCCcEEEE-eCChhhHHHHHHcCCCEEEEeccCC-
Q 014369          150 KVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPVL-TPNLKGFEAAIAAGAKEVAIFASAS-  225 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l-~~~~~di~~a~~~Gv~~V~i~~~~S-  225 (426)
                      ..+.++.+.++|++.|++.... .++      ...++++.+++ .++..+.+- +.+.++++.+.++|++.|.+..... 
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~G~~~------~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G~  329 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQGNSV------YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGS  329 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCCCSH------HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSC
T ss_pred             hHHHHHHHHHcCCCEEEeeccCCcch------hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCCc
Confidence            4667788899999999994321 111      12355666653 446555542 4678889999999999998854211 


Q ss_pred             --hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          226 --EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       226 --d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                        ........+......+..+   .+.++..+++|.+         +.+-.++..+.++.    .+||+.+.+.=.
T Consensus       330 ~~~t~~~~~~g~~~~~~~~~~---~~~~~~~~ipVia---------~GGI~~~~di~kal----a~GAd~V~iG~~  389 (514)
T 1jcn_A          330 ICITQEVMACGRPQGTAVYKV---AEYARRFGVPIIA---------DGGIQTVGHVVKAL----ALGASTVMMGSL  389 (514)
T ss_dssp             CBTTBCCCSCCCCHHHHHHHH---HHHHGGGTCCEEE---------ESCCCSHHHHHHHH----HTTCSEEEESTT
T ss_pred             ccccccccCCCccchhHHHHH---HHHHhhCCCCEEE---------ECCCCCHHHHHHHH----HcCCCeeeECHH
Confidence              0000111222233344333   3334555777652         23444566655433    489998888654

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=82.98  E-value=4.4  Score=38.99  Aligned_cols=36  Identities=8%  Similarity=0.096  Sum_probs=18.3

Q ss_pred             EEEe-ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc
Q 014369          218 VAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  257 (426)
Q Consensus       218 V~i~-~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~  257 (426)
                      |.|+ +..-|-++......+.++.+    ++++...+.|++
T Consensus         6 v~i~D~tlRDG~Q~~~~~~~~e~k~----~i~~~L~~~Gv~   42 (298)
T 2cw6_A            6 VKIVEVGPRDGLQNEKNIVSTPVKI----KLIDMLSEAGLS   42 (298)
T ss_dssp             CEEEECTTTHHHHTCSSCCCHHHHH----HHHHHHHHTTCS
T ss_pred             eEEEECCCCcccCCCCCCCCHHHHH----HHHHHHHHcCcC
Confidence            4444 24455544444455655554    344445556765

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=82.87  E-value=9.7  Score=37.59  Aligned_cols=122  Identities=14%  Similarity=0.200  Sum_probs=76.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-----------CCC------C----CCC-------HHHHHHHHHH
Q 014369          234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-----------PVE------G----AIP-------PSKVAYVAKE  285 (426)
Q Consensus       234 ~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-----------pd~------~----r~~-------~~~l~~~~~~  285 (426)
                      +...++.++..+++++.++++|-++.+.|... |-           |-+      .    ..+       .+.+.+.++.
T Consensus        73 gi~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~  151 (343)
T 3kru_A           73 GIWNDEQVKELKKIVDICKANGAVMGIQLAHA-GRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKR  151 (343)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhcCCceEeeehhhc-cCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhh
Confidence            33445778888999999999999888888653 11           000      0    012       2345556777


Q ss_pred             HHhCCCCEEEEc-------------------CCCCCCCH---HHHHHHHHHHHHhcC-CceEEEEeCCC-c---CcHHHH
Q 014369          286 LHDMGCFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVP-VEKLAVHLHDT-Y---GQSLPN  338 (426)
Q Consensus       286 l~~~Gad~I~l~-------------------DT~G~~~P---~~v~~li~~l~~~~p-~~~i~~H~HNd-~---GlA~AN  338 (426)
                      +.++|.|.|-|-                   |-.|...-   .-+.++|+++++.++ +.+|.+-..-+ +   |..+..
T Consensus       152 a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~  231 (343)
T 3kru_A          152 ANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDM  231 (343)
T ss_dssp             HHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHH
T ss_pred             ccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHH
Confidence            888999988875                   55564332   345788999999886 44677755532 1   333333


Q ss_pred             HH----HHHHcCCCEEeecccCC
Q 014369          339 IL----ISLQMGISTVDCSVAGL  357 (426)
Q Consensus       339 aL----aAl~aGa~~VD~Sv~Gl  357 (426)
                      ++    ..-++ +++|+.+..+.
T Consensus       232 ~~~~a~~l~~~-vd~i~vs~g~~  253 (343)
T 3kru_A          232 MVEYINMIKDK-VDLIDVSSGGL  253 (343)
T ss_dssp             HHHHHHHHTTT-CSEEEEECCCS
T ss_pred             HHHHHHHhhcc-ccEEeccCCce
Confidence            22    22245 99999986554

>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}

Probab=82.52  E-value=33  Score=32.33  Aligned_cols=139  Identities=6%  Similarity=-0.051  Sum_probs=76.3

Q ss_pred             CHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE
Q 014369          181 DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  258 (426)
Q Consensus       181 D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~S-d-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v  258 (426)
                      +..++++.++.. +..+...+.... -+.+.+.|.+.+.+.+... + .|.+  ++......++++.+.++.+++.| .+
T Consensus       144 ~l~~li~~~~~~-g~~~~l~TNG~~-~~~l~~L~~~~v~isld~~~~~~~~~--i~~~~~~~~~~v~~~i~~l~~~g-~v  218 (311)
T 2z2u_A          144 YLDELIKIFHKN-GFTTFVVSNGIL-TDVIEKIEPTQLYISLDAYDLDSYRR--ICGGKKEYWESILNTLDILKEKK-RT  218 (311)
T ss_dssp             THHHHHHHHHHT-TCEEEEEECSCC-HHHHHHCCCSEEEEECCCSSTTTC------CCCHHHHHHHHHHHHHHTTSS-SE
T ss_pred             hHHHHHHHHHHC-CCcEEEECCCCC-HHHHHhCCCCEEEEEeecCCHHHHHH--HhCCccchHHHHHHHHHHHHhcC-CE
Confidence            345566655543 555444442211 2444456888888876542 2 2221  22222356888888999999999 76


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc------CCC------CCCCHHHHHHHHHHHHHhcCCceEEE
Q 014369          259 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG------DTI------GVGTPGTVVPMLEAVMAVVPVEKLAV  326 (426)
Q Consensus       259 ~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~------DT~------G~~~P~~v~~li~~l~~~~p~~~i~~  326 (426)
                      .+.+...   +..  .+  .+.++++.+.+.|++.|.|-      .+.      ...+|+++.++++.+.+..+...++-
T Consensus       219 ~i~~~~~---~g~--n~--~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~~  291 (311)
T 2z2u_A          219 CIRTTLI---RGY--ND--DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLIDD  291 (311)
T ss_dssp             EEEEEEC---TTT--TC--CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEEEE
T ss_pred             EEEEEEE---CCc--ch--hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceEEec
Confidence            6544321   211  12  34455555666788877631      121      34577889999998887554222344


Q ss_pred             EeCCC
Q 014369          327 HLHDT  331 (426)
Q Consensus       327 H~HNd  331 (426)
                      |.|..
T Consensus       292 ~~~~~  296 (311)
T 2z2u_A          292 SEDSR  296 (311)
T ss_dssp             EGGGT
T ss_pred             cCcce
Confidence            55543

>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A

Probab=82.48  E-value=7.1  Score=37.73  Aligned_cols=126  Identities=17%  Similarity=0.166  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE----cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  349 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l----~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~  349 (426)
                      .+|+++++-+.++.++||..+=+    .|-.....|+.++++++.||++.|++.|.+-.--..+....-=++.++..-++
T Consensus        31 vTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe~  110 (282)
T 2y7e_A           31 ITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPEM  110 (282)
T ss_dssp             CSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCSE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCCE
Confidence            57889998888999999875543    45566778899999999999887776676665433333344444444444455


Q ss_pred             EeecccCCCCCCCCCC--CCCcccHHHHHHHHHhCCCCCC---cChhhHHHHHHHHHH
Q 014369          350 VDCSVAGLGGCPYAKG--ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFINK  402 (426)
Q Consensus       350 VD~Sv~GlGecP~a~g--raGNa~lEevv~~L~~lG~~~~---iDl~~L~~la~~v~~  402 (426)
                      ...++   |..=|...  ......+++++..++..|+...   +|...|..+..++.+
T Consensus       111 asl~~---gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~  165 (282)
T 2y7e_A          111 ATLNA---GTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKK  165 (282)
T ss_dssp             EEEEC---CCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHT
T ss_pred             EEecc---cccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHc
Confidence            43332   22000000  1223568899999999998864   799999998887766

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=82.41  E-value=2.9  Score=40.26  Aligned_cols=82  Identities=10%  Similarity=0.047  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEE-EeCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAV-HLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~-H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+ -++|+.--++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   95 (292)
T 2vc6_A           16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG   95 (292)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999988   5788888899998887653 344444 45677788888999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        96 adavlv~  102 (292)
T 2vc6_A           96 ADGVLIV  102 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977443

>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*

Probab=82.34  E-value=8.1  Score=32.75  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      +.-++..|...|+++|..|.+++         .+++.                     +.+.+.+.+.|.+.......  
T Consensus        20 ~~~v~~~l~~~G~~Vi~lG~~~p---------~e~~v---------------------~~a~~~~~d~v~lS~~~~~~--   67 (137)
T 1ccw_A           20 NKILDHAFTNAGFNVVNIGVLSP---------QELFI---------------------KAAIETKADAILVSSLYGQG--   67 (137)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEC---------HHHHH---------------------HHHHHHTCSEEEEEECSSTH--
T ss_pred             HHHHHHHHHHCCCEEEECCCCCC---------HHHHH---------------------HHHHhcCCCEEEEEecCcCc--
Confidence            34566778889999999987543         23333                     45666788888887654331  


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                                 +..+.++++..++.|. .+.+.+   -|.+..   +++.+.+..+.+.++|+|.+.-..|
T Consensus        68 -----------~~~~~~~i~~l~~~g~~~i~v~v---GG~~~~---~~~~~~~~~~~~~~~G~d~~~~~g~  121 (137)
T 1ccw_A           68 -----------EIDCKGLRQKCDEAGLEGILLYV---GGNIVV---GKQHWPDVEKRFKDMGYDRVYAPGT  121 (137)
T ss_dssp             -----------HHHHTTHHHHHHHTTCTTCEEEE---EESCSS---SSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred             -----------HHHHHHHHHHHHhcCCCCCEEEE---ECCCcC---chHhhhhhHHHHHHCCCCEEECCCC
Confidence                       3445667777777776 343222   132221   1122333455677899988775544

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=82.32  E-value=12  Score=33.72  Aligned_cols=114  Identities=16%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             CcEEEEeCC------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC
Q 014369          195 ARLPVLTPN------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  268 (426)
Q Consensus       195 ~~l~~l~~~------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~  268 (426)
                      .++..+++.      ..+++.+.+.|++.|++-..          +.+.++..    ++++..++.+.... .++  +. 
T Consensus        17 ~~l~~It~~~~~~~~l~~~~~~~~~G~~~v~lr~~----------~~~~~~~~----~~~~~l~~~~~~~~-~l~--v~-   78 (221)
T 1yad_A           17 MELHAITDDSKPVEELARIIITIQNEVDFIHIRER----------SKSAADIL----KLLDLIFEGGIDKR-KLV--MN-   78 (221)
T ss_dssp             CEEEEECCSCSCHHHHHHHHHHHGGGCSEEEECCT----------TSCHHHHH----HHHHHHHHTTCCGG-GEE--EE-
T ss_pred             ccEEEEECCCcCcchHHHHHHHHHCCCCEEEEccC----------CCCHHHHH----HHHHHHHHhcCcCC-eEE--Ee-
Confidence            456666653      24577888899998876321          23444443    34444444443211 121  10 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                         .         .++.+.++|+|.|.+....  ..+..+       ++..+...+++-+|+     ...+..|.++|+|
T Consensus        79 ---~---------~~~~a~~~gad~v~l~~~~--~~~~~~-------~~~~~~~~ig~sv~t-----~~~~~~a~~~gaD  132 (221)
T 1yad_A           79 ---G---------RVDIALFSTIHRVQLPSGS--FSPKQI-------RARFPHLHIGRSVHS-----LEEAVQAEKEDAD  132 (221)
T ss_dssp             ---S---------CHHHHHTTTCCEEEECTTS--CCHHHH-------HHHCTTCEEEEEECS-----HHHHHHHHHTTCS
T ss_pred             ---C---------hHHHHHHcCCCEEEeCCCc--cCHHHH-------HHHCCCCEEEEEcCC-----HHHHHHHHhCCCC
Confidence               0         1255778999999997542  233333       333344567777774     4567888999999


Q ss_pred             EEee
Q 014369          349 TVDC  352 (426)
Q Consensus       349 ~VD~  352 (426)
                      +|-.
T Consensus       133 ~i~~  136 (221)
T 1yad_A          133 YVLF  136 (221)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8843

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=82.31  E-value=18  Score=34.92  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=102.4

Q ss_pred             CHHHHHHHHHHHHhCC----CCeEEEecCCC-CCccc-ccc--CHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcC
Q 014369          146 PTGVKVELIRRLVSSG----LPVVEATSFVS-PKWVP-QLA--DARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAG  214 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~G----v~~IEvG~~~s-~~~~p-~~~--D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~G  214 (426)
                      +.+..+++++.|.++|    +..+=-.+|-- |.--| .+.  ..++-++.+++.   .++.+..=......++.+.+ .
T Consensus        30 ~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~te~~d~~~~~~l~~-~  108 (292)
T 1o60_A           30 SRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKIITDVHEIYQCQPVAD-V  108 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEECCSGGGHHHHHT-T
T ss_pred             CHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHh-c
Confidence            7888899999998876    33221122211 11111 111  123333334332   24444333346777887777 7


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhCCCCE
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~Gad~  293 (426)
                      ++.+.|...  +        +..   .    ++++++-..|.+|-  |..       +. .+++.+...++.+...|...
T Consensus       109 vd~~kIgA~--~--------~~n---~----~Ll~~~a~~~kPV~--lk~-------G~~~t~~ei~~Av~~i~~~Gn~~  162 (292)
T 1o60_A          109 VDIIQLPAF--L--------ARQ---T----DLVEAMAKTGAVIN--VKK-------PQFLSPSQMGNIVEKIEECGNDK  162 (292)
T ss_dssp             CSEEEECGG--G--------TTC---H----HHHHHHHHTTCEEE--EEC-------CTTSCGGGHHHHHHHHHHTTCCC
T ss_pred             CCEEEECcc--c--------ccC---H----HHHHHHHcCCCcEE--EeC-------CCCCCHHHHHHHHHHHHHcCCCe
Confidence            898888632  1        111   1    24444446788876  331       22 26778888888889999876


Q ss_pred             EEEcCCCCCCCH-H---HHHHHHHHHHHhcCCceEEE---Ee-----------CCCcCcHHHHHHHHHHcCCC--EEeec
Q 014369          294 ISLGDTIGVGTP-G---TVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQMGIS--TVDCS  353 (426)
Q Consensus       294 I~l~DT~G~~~P-~---~v~~li~~l~~~~p~~~i~~---H~-----------HNd~GlA~ANaLaAl~aGa~--~VD~S  353 (426)
                      +.|.--.+.... .   .+.. +..+++.++..+|.+   |.           -....+...-+.+|+.+||+  .|+.=
T Consensus       163 i~L~~rg~~~~y~~~~~dl~~-i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H  241 (292)
T 1o60_A          163 IILCDRGTNFGYDNLIVDMLG-FSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAH  241 (292)
T ss_dssp             EEEEECCEECSTTCEECCTTH-HHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EEEEECCCCCCCCccccCHHH-HHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEec
Confidence            666664332222 1   3333 346788775567888   65           23333446777899999999  77765


Q ss_pred             c
Q 014369          354 V  354 (426)
Q Consensus       354 v  354 (426)
                      +
T Consensus       242 ~  242 (292)
T 1o60_A          242 P  242 (292)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=82.26  E-value=21  Score=32.42  Aligned_cols=102  Identities=12%  Similarity=-0.014  Sum_probs=66.7

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +-++.+.++|++.|.++..    +.  .+..+.    +.+.++.+.+++.|+++.. +....  .    ...+.+.+.++
T Consensus        34 ~~l~~~~~~G~~~vEl~~~----~~--~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~~~--~----~~~~~~~~~i~   96 (257)
T 3lmz_A           34 TTLKTLERLDIHYLCIKDF----HL--PLNSTD----EQIRAFHDKCAAHKVTGYA-VGPIY--M----KSEEEIDRAFD   96 (257)
T ss_dssp             HHHHHHHHTTCCEEEECTT----TS--CTTCCH----HHHHHHHHHHHHTTCEEEE-EEEEE--E----CSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEecc----cC--CCCCCH----HHHHHHHHHHHHcCCeEEE-Eeccc--c----CCHHHHHHHHH
Confidence            4578888999999999854    10  112232    2345666777889998763 22111  1    45788999999


Q ss_pred             HHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCC
Q 014369          285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  330 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HN  330 (426)
                      .+.++|+..|.+.  .|   .+.+.++.+... ..+ +.|.+|.|+
T Consensus        97 ~A~~lGa~~v~~~--p~---~~~l~~l~~~a~-~~g-v~l~lEn~~  135 (257)
T 3lmz_A           97 YAKRVGVKLIVGV--PN---YELLPYVDKKVK-EYD-FHYAIHLHG  135 (257)
T ss_dssp             HHHHHTCSEEEEE--EC---GGGHHHHHHHHH-HHT-CEEEEECCC
T ss_pred             HHHHhCCCEEEec--CC---HHHHHHHHHHHH-HcC-CEEEEecCC
Confidence            9999999988874  12   345555555443 334 479999996

>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*

Probab=82.25  E-value=24  Score=34.19  Aligned_cols=146  Identities=13%  Similarity=0.040  Sum_probs=90.4

Q ss_pred             HHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh
Q 014369          209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  288 (426)
Q Consensus       209 ~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~  288 (426)
                      .....+.+.|.|.....        +.++...++    ++..+++.|+++..++++.    +   .+.+.+.+....+.+
T Consensus        37 ~L~~~~pd~vsVT~~~~--------g~~r~~t~~----~a~~i~~~g~~~i~Hltc~----~---~~~~~l~~~L~~~~~   97 (310)
T 3apt_A           37 ELKAFRPAFVSITYGAM--------GSTRERSVA----WAQRIQSLGLNPLAHLTVA----G---QSRKEVAEVLHRFVE   97 (310)
T ss_dssp             HHGGGCCSEEEECCCST--------TCSHHHHHH----HHHHHHHTTCCBCEEEECT----T---SCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEecCCC--------CCcchhHHH----HHHHHHHhCCCeEEEeecC----C---CCHHHHHHHHHHHHH
Confidence            33445678887765431        234444443    4555567899999888863    2   467889999999999


Q ss_pred             CCCCEE-EE-cCCCCC-C--------CHHHHHHHHHHHHHhcCC-ceEEEEeC----CC---cCcHHHHHHHHHHcCCCE
Q 014369          289 MGCFEI-SL-GDTIGV-G--------TPGTVVPMLEAVMAVVPV-EKLAVHLH----DT---YGQSLPNILISLQMGIST  349 (426)
Q Consensus       289 ~Gad~I-~l-~DT~G~-~--------~P~~v~~li~~l~~~~p~-~~i~~H~H----Nd---~GlA~ANaLaAl~aGa~~  349 (426)
                      +|++.| .| .|-... .        .. ...+||+.+++..++ ..|++=++    -+   +..-+.+...=+++||+.
T Consensus        98 ~GI~niLaLrGD~p~~~g~~~~~~~~f~-~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf  176 (310)
T 3apt_A           98 SGVENLLALRGDPPRGERVFRPHPEGFR-YAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDF  176 (310)
T ss_dssp             TTCCEEEEECCCCSTTCCSCCCCTTSCS-SHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSE
T ss_pred             CCCCEEEEEcCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCE
Confidence            999854 33 232211 0        22 567888888876443 45666554    22   223456666678999998


Q ss_pred             EeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCC
Q 014369          350 VDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       350 VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~  385 (426)
                      +=|=+.           .-+-..+.++..++..|++
T Consensus       177 ~iTQ~f-----------fD~~~~~~f~~~~r~~Gi~  201 (310)
T 3apt_A          177 AITQLF-----------FNNAHYFGFLERARRAGIG  201 (310)
T ss_dssp             EEECCC-----------SCHHHHHHHHHHHHHTTCC
T ss_pred             EEeccc-----------CCHHHHHHHHHHHHHcCCC
Confidence            766544           3345566666666655654

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=82.09  E-value=28  Score=33.19  Aligned_cols=15  Identities=13%  Similarity=0.209  Sum_probs=9.7

Q ss_pred             CCcccHHHHHHHHHh
Q 014369          367 SGNVATEDVVYMLSG  381 (426)
Q Consensus       367 aGNa~lEevv~~L~~  381 (426)
                      .+|..-+.++...+.
T Consensus       208 ~~n~~P~~~~~l~~a  222 (292)
T 3daq_A          208 IANVIPKEFQALYDA  222 (292)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            556777777766654

>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}

Probab=82.02  E-value=4.2  Score=39.58  Aligned_cols=68  Identities=7%  Similarity=-0.011  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHH-HcCCC
Q 014369          279 VAYVAKELHDMGCFEISLGDTIG-VGTPGTVVP--------MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGIS  348 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~G-~~~P~~v~~--------li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl-~aGa~  348 (426)
                      +.++++...++|++.|.+.|+.| .+.|....+        +++.+++. |+.++-.|+..+     .+.+..+ +.|++
T Consensus       181 ~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g~-----~~~l~~l~~~g~d  254 (338)
T 2eja_A          181 VLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRGS-----SSFIDLAVDYRAD  254 (338)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESSH-----HHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCCc-----HHHHHHHHHcCCC
Confidence            34455666678999999999764 468876544        45566554 556788888544     3344444 67888


Q ss_pred             EEee
Q 014369          349 TVDC  352 (426)
Q Consensus       349 ~VD~  352 (426)
                      .++.
T Consensus       255 ~~~~  258 (338)
T 2eja_A          255 ALSV  258 (338)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7743

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=81.89  E-value=2.2  Score=41.79  Aligned_cols=118  Identities=14%  Similarity=0.066  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEcCC-CCCCCHHHHHHHHHHHHHhcC
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~DT-~G~~~P~~v~~li~~l~~~~p  320 (426)
                      +..++.+.|++.|+-|-+     |.+     .+.+.+..+++++.+.+...| .+.-. ..+ .+..+..++..+.+..+
T Consensus        14 ~~~~ll~~A~~~~yAV~A-----fNv-----~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y-~g~~~~~~~~~~A~~~~   82 (306)
T 3pm6_A           14 RALPLLTFARTHSFAIPA-----ICV-----YNLEGILAIIRAAEHKRSPAMILLFPWAIQY-ADSLLVRTAASACRAAS   82 (306)
T ss_dssp             SSHHHHHHHHHTTCCEEE-----EEC-----SSHHHHHHHHHHHHHTTCCEEEEECHHHHHH-HTTHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHCCcEEEE-----Eee-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-ccHHHHHHHHHHHHHCC
Confidence            346788899999987753     322     357899999999999998754 34321 111 12234445555555544


Q ss_pred             CceEEEEeCCCcCcHHHHHHHHHHc--------CCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHHHhC
Q 014369          321 VEKLAVHLHDTYGQSLPNILISLQM--------GIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  382 (426)
Q Consensus       321 ~~~i~~H~HNd~GlA~ANaLaAl~a--------Ga~--~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~l  382 (426)
                       +|+.+|.  |.|....-...|+++        |.+  .+|+|-..+-|        -..-|.+++...+..
T Consensus        83 -VPVaLHl--DHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~eE--------Ni~~Tk~vv~~ah~~  143 (306)
T 3pm6_A           83 -VPITLHL--DHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEE--------NLRLTRELVAYCNAR  143 (306)
T ss_dssp             -SCEEEEE--EEECCHHHHHHHHHTC------CCCSEEEECCTTSCHHH--------HHHHHHHHHHHHHTT
T ss_pred             -CCEEEEc--CCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCHHH--------HHHHHHHHHHHHHHc
Confidence             4677665  555556779999999        988  67999887665        235566777777643

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=81.85  E-value=13  Score=35.44  Aligned_cols=14  Identities=21%  Similarity=0.043  Sum_probs=9.4

Q ss_pred             CCcccHHHHHHHHH
Q 014369          367 SGNVATEDVVYMLS  380 (426)
Q Consensus       367 aGNa~lEevv~~L~  380 (426)
                      .+|...+.++.+.+
T Consensus       196 ~an~~P~~~~~l~~  209 (288)
T 2nuw_A          196 FTNFIPEVIVKQRD  209 (288)
T ss_dssp             GGGTCHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            66777777766654

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=81.85  E-value=6.5  Score=36.46  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHhCC--CCeEEEec--CCCCCccccccCHHHHHHHhHhcCCCcEEE---E--eCC--hhhHHHHHHcC
Q 014369          146 PTGVKVELIRRLVSSG--LPVVEATS--FVSPKWVPQLADARDVMEAVRDLEGARLPV---L--TPN--LKGFEAAIAAG  214 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~G--v~~IEvG~--~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~---l--~~~--~~di~~a~~~G  214 (426)
                      +.++-++++   +++|  ++.+++|.  |.+  +.      .++++.+++.++..+..   +  .+|  ..-++.+.++|
T Consensus        23 ~~~~a~~~v---~~~~~~v~~~Kvg~~lf~~--~G------~~~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~g   91 (228)
T 3m47_A           23 NRDDALRVT---GEVREYIDTVKIGYPLVLS--EG------MDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAG   91 (228)
T ss_dssp             SHHHHHHHH---HTTTTTCSEEEEEHHHHHH--HC------THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHH---HHcCCcccEEEEcHHHHHh--cC------HHHHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCC
Confidence            444444444   4555  88999984  211  01      13344454323333221   1  133  23567778899


Q ss_pred             CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC-HHHHHHHHHHHHhCCCCE
Q 014369          215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-PSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       215 v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~-~~~l~~~~~~l~~~Gad~  293 (426)
                      +|.|.+......            ++   +..+++.+++.|..|.  +-.....+.. ... .+.+..+++...+.|++-
T Consensus        92 ad~vtvh~~~G~------------~~---l~~~~~~~~~~g~~v~--vLt~~s~~~~-~~~~~~~~~~~a~~a~~~G~~G  153 (228)
T 3m47_A           92 ADAIIVHGFPGA------------DS---VRACLNVAEEMGREVF--LLTEMSHPGA-EMFIQGAADEIARMGVDLGVKN  153 (228)
T ss_dssp             CSEEEEESTTCH------------HH---HHHHHHHHHHHTCEEE--EECCCCSGGG-GTTHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEeccCCH------------HH---HHHHHHHHHhcCCCeE--EEEeCCCccH-HHHHHHHHHHHHHHHHHhCCcE
Confidence            999888754432            23   3455666666676543  2222222221 111 245566777888899887


Q ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCcCcHH--HHHHHHHHcCCCEEe
Q 014369          294 ISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSL--PNILISLQMGISTVD  351 (426)
Q Consensus       294 I~l~DT~G~~~P~~v~~li~~l~~~~p~-~~i~~H~HNd~GlA~--ANaLaAl~aGa~~VD  351 (426)
                      +..    |...|.++..    +|+..|. ..+-     +.|-+.  ++. .++++|++++=
T Consensus       154 vV~----~at~~~e~~~----ir~~~~~~~~iv-----~PGI~~~g~~p-~~~~aGad~iV  200 (228)
T 3m47_A          154 YVG----PSTRPERLSR----LREIIGQDSFLI-----SPGVGAQGGDP-GETLRFADAII  200 (228)
T ss_dssp             EEC----CSSCHHHHHH----HHHHHCSSSEEE-----ECC----------CGGGTCSEEE
T ss_pred             EEE----CCCChHHHHH----HHHhcCCCCEEE-----ecCcCcCCCCH-hHHHcCCCEEE
Confidence            553    3335766654    4444432 1110     111111  245 88999999653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=81.82  E-value=9.5  Score=39.69  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=51.5

Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+.++.+.++|++.|.+-.+-|  .+..+.++++.+++.+|+.++.+-.=.    ...-+..++++||+.|.+
T Consensus       258 ~era~aLveaGvd~I~Id~a~g--~~~~v~~~i~~i~~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~v  324 (511)
T 3usb_A          258 MTRIDALVKASVDAIVLDTAHG--HSQGVIDKVKEVRAKYPSLNIIAGNVA----TAEATKALIEAGANVVKV  324 (511)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhhccceEEeccccc--chhhhhhHHHHHHHhCCCceEEeeeec----cHHHHHHHHHhCCCEEEE
Confidence            4557788899999999876654  567888999999999986566653211    245678899999999986

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=81.77  E-value=14  Score=35.32  Aligned_cols=63  Identities=11%  Similarity=-0.041  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHhC-CCCEE--EEcCCCCC-CCHHHHHH
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDM-GCFEI--SLGDTIGV-GTPGTVVP  310 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~~l~~~-Gad~I--~l~DT~G~-~~P~~v~~  310 (426)
                      ...+.++.|++.|.....     .-.|.-.+ .+.+.+.+..+.+.++ +...+  +++...|+ +.|+.+.+
T Consensus        79 ~ai~la~~A~~~Gadavl-----v~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~  146 (293)
T 1w3i_A           79 DAIRLAKLSKDFDIVGIA-----SYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE  146 (293)
T ss_dssp             HHHHHHHHGGGSCCSEEE-----EECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEE-----EcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence            344566677778876432     11354445 5667776666665543 44432  34445564 45555544

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=81.77  E-value=14  Score=35.63  Aligned_cols=81  Identities=6%  Similarity=-0.121  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHh-CCCC--EEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369          242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCF--EISLGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~-~Gad--~I~l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      +...+.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+ .+..  .-+++...|+-.+.+   ++..|. .
T Consensus        86 ~~ai~la~~a~~~Gadavlv~-----~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~---~~~~La-~  156 (300)
T 3eb2_A           86 ADAVAQAKLYEKLGADGILAI-----LEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLD---VIARLA-E  156 (300)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEE-----ECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHH---HHHHHH-T
T ss_pred             HHHHHHHHHHHHcCCCEEEEc-----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHH---HHHHHH-c
Confidence            334466677888887654211     354445677777777776655 3443  344566677644432   333342 4


Q ss_pred             cCCceEEE-EeCCCc
Q 014369          319 VPVEKLAV-HLHDTY  332 (426)
Q Consensus       319 ~p~~~i~~-H~HNd~  332 (426)
                      .|.+ +++ ....|.
T Consensus       157 ~pnI-vgiKdssgd~  170 (300)
T 3eb2_A          157 HPRI-RYIKDASTNT  170 (300)
T ss_dssp             STTE-EEEEECSSBH
T ss_pred             CCCE-EEEEcCCCCH
Confidence            6763 555 444443

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=81.66  E-value=17  Score=34.19  Aligned_cols=115  Identities=16%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEeccCC
Q 014369          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS  225 (426)
Q Consensus       148 ~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~~S  225 (426)
                      .+-.++++...+.|...|-+-.  .+.+..  ... +.++.+++.-++.+..  +..+...++.|.++|+|.|++.... 
T Consensus        65 ~~p~~~A~~~~~~GA~~isvlt--~~~~f~--G~~-~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~-  138 (254)
T 1vc4_A           65 VDPVEAALAYARGGARAVSVLT--EPHRFG--GSL-LDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVAL-  138 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEEC--CCSSSC--CCH-HHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH-
T ss_pred             CCHHHHHHHHHHcCCCEEEEec--chhhhc--cCH-HHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccc-
Confidence            4568899999999999998821  111110  122 3344454322333221  2345667888999999999997531 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       226 d~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                       .           +  +.++++++.++++|+.+.+.+        +   +.+++    +.+.++|++.|.+.
T Consensus       139 -l-----------~--~~l~~l~~~a~~lGl~~lvev--------~---~~~E~----~~a~~~gad~IGvn  181 (254)
T 1vc4_A          139 -L-----------G--ELTGAYLEEARRLGLEALVEV--------H---TEREL----EIALEAGAEVLGIN  181 (254)
T ss_dssp             -H-----------G--GGHHHHHHHHHHHTCEEEEEE--------C---SHHHH----HHHHHHTCSEEEEE
T ss_pred             -h-----------H--HHHHHHHHHHHHCCCeEEEEE--------C---CHHHH----HHHHHcCCCEEEEc
Confidence             0           1  456788889999998875322        1   33443    35567788877764

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=81.65  E-value=13  Score=34.11  Aligned_cols=113  Identities=22%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.+.++|++.|.+-.+  +.      ...    .+.+.+.++.|+++|+.+.+.+.     +    .  +.    .+++
T Consensus        75 ~~~~~~~Gad~Vll~~s--er------~l~----~~e~~~~~~~a~~~Gl~~iv~v~-----~----~--~e----~~~~  127 (219)
T 2h6r_A           75 AEAIKDCGCKGTLINHS--EK------RML----LADIEAVINKCKNLGLETIVCTN-----N----I--NT----SKAV  127 (219)
T ss_dssp             HHHHHHHTCCEEEESBT--TB------CCB----HHHHHHHHHHHHHHTCEEEEEES-----S----S--HH----HHHH
T ss_pred             HHHHHHcCCCEEEECCc--cc------cCC----HHHHHHHHHHHHHCCCeEEEEeC-----C----c--hH----HHHH
Confidence            89999999999999543  10      011    12357888899999998764331     1    1  11    2445


Q ss_pred             HhCCCCEEEEcCCC--------CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH-HHHcCCCEE
Q 014369          287 HDMGCFEISLGDTI--------GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTV  350 (426)
Q Consensus       287 ~~~Gad~I~l~DT~--------G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa-Al~aGa~~V  350 (426)
                      .+.|.+.|++.-..        ...+|+++....+.+++.....++.+    ..|.-..|... ..+.|+|.|
T Consensus       128 ~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~----ggGI~~~~~~~~~~~~gaDgv  196 (219)
T 2h6r_A          128 AALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLC----GAGISKGEDVKAALDLGAEGV  196 (219)
T ss_dssp             TTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEE----CSSCCSHHHHHHHHTTTCCCE
T ss_pred             HhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEE----EeCcCcHHHHHHHhhCCCCEE
Confidence            56788888876433        24456556666666655432333432    33444456666 456677644

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}

Probab=81.54  E-value=39  Score=32.46  Aligned_cols=136  Identities=13%  Similarity=0.060  Sum_probs=80.5

Q ss_pred             CHHHHHHHhHhcCCCcEEEEeC--ChhhHHHHHHcC--CCEEEEeccCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          181 DARDVMEAVRDLEGARLPVLTP--NLKGFEAAIAAG--AKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       181 D~~~v~~~i~~~~~~~l~~l~~--~~~di~~a~~~G--v~~V~i~~~~S-d-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                      +..++++.++.. +.++...+.  ..+-++...++|  .+.+.+.+... + .|.+.. +......++++.+.++.+++.
T Consensus       158 ~l~~ll~~~~~~-g~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~-~~~~~~~~~~~~~~i~~l~~~  235 (342)
T 2yx0_A          158 YMGDLVEEFHKR-GFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVN-IPMIPDGWERILRFLELMRDL  235 (342)
T ss_dssp             THHHHHHHHHHT-TCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHH-CBSSSCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHC-CCcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHh-CCCcccHHHHHHHHHHHHHhC
Confidence            345556655543 455554442  234467777877  88998887653 3 333221 111123466677788888899


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc------CC------CCCCCHHHHHHHHHHHHHhcCCc
Q 014369          255 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG------DT------IGVGTPGTVVPMLEAVMAVVPVE  322 (426)
Q Consensus       255 G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~------DT------~G~~~P~~v~~li~~l~~~~p~~  322 (426)
                      |+.+.+.+..   .|.....+   +.++++.+.+.|++.|.+.      .+      ....+++++.++.+.+++.+|..
T Consensus       236 g~~v~i~~~l---~~g~n~~~---~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~  309 (342)
T 2yx0_A          236 PTRTVVRLTL---VKGENMHS---PEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGY  309 (342)
T ss_dssp             SSEEEEEEEE---CTTTTCCC---HHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTE
T ss_pred             CCCEEEEEEE---ECCccHHH---HHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCC
Confidence            9877655543   23222223   5566666777888877641      11      22456789999999999888654


Q ss_pred             eE
Q 014369          323 KL  324 (426)
Q Consensus       323 ~i  324 (426)
                      .|
T Consensus       310 ~I  311 (342)
T 2yx0_A          310 HI  311 (342)
T ss_dssp             EE
T ss_pred             ce
Confidence            44

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=81.52  E-value=8.2  Score=38.04  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----------CCCCCC---CHHHHHHHHHHHHHh
Q 014369          252 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----------DTIGVG---TPGTVVPMLEAVMAV  318 (426)
Q Consensus       252 k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----------DT~G~~---~P~~v~~li~~l~~~  318 (426)
                      ...+.++.++|.   |      .+|+.+.+.++.+.++|+|.|.|-          |-.|..   .|..+.++++++++.
T Consensus        54 ~~~~~p~~vQL~---g------~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~  124 (350)
T 3b0p_A           54 RPEEHPIALQLA---G------SDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA  124 (350)
T ss_dssp             CGGGCSEEEEEE---C------SCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeC---C------CCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHH
Confidence            455666766664   2      257889999999999999977774          444543   488899999999988


Q ss_pred             cCCceEEEEe---CCCcC---cHHHHHHHHHHcCCCEEeec
Q 014369          319 VPVEKLAVHL---HDTYG---QSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       319 ~p~~~i~~H~---HNd~G---lA~ANaLaAl~aGa~~VD~S  353 (426)
                      +. .+|.+-.   -++..   ..+.-+..+.++|++.|.++
T Consensus       125 v~-~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~  164 (350)
T 3b0p_A          125 VR-VPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVH  164 (350)
T ss_dssp             CS-SCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             hC-CceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEe
Confidence            74 3566622   23322   23445566678999998875

>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*

Probab=81.49  E-value=5.2  Score=38.17  Aligned_cols=107  Identities=18%  Similarity=0.298  Sum_probs=64.8

Q ss_pred             CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCC-hHHHh--h----------hcCCC-------HHHHHHHHHHHHHHH
Q 014369          193 EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASAS-EAFSK--S----------NINCS-------IEDSLVRYRAVAHAA  251 (426)
Q Consensus       193 ~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~S-d~~~~--~----------~~~~s-------~~e~l~~~~~~v~~A  251 (426)
                      .+++++.++ |..+.++.|.+.|++.|-+....- +.+..  +          .+..+       .++.|+++.+++++|
T Consensus       123 ~GIrVSLFIDpd~~qi~aA~~~GAd~IELhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A  202 (260)
T 3o6c_A          123 ANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKG  202 (260)
T ss_dssp             TTCEEEEEECSCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCHHHHHHHHHhCCCEEEEechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            467777776 678899999999999999975411 11110  0          11111       345788999999999


Q ss_pred             HhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEc-----CCCCCCCHHHHHHHHH
Q 014369          252 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLG-----DTIGVGTPGTVVPMLE  313 (426)
Q Consensus       252 k~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l~-----DT~G~~~P~~v~~li~  313 (426)
                      +++|+.|.+      |   ++ .+.+.+..++    .. +..+++|.     +.+=++....|++|.+
T Consensus       203 ~~lGL~VnA------G---HG-L~y~Nv~~ia----~ip~i~ElnIGHaiIa~Al~~Gl~~AV~~m~~  256 (260)
T 3o6c_A          203 LELGLKVAA------G---HG-LNYKNVKPVV----KIKEICELNIGQSIVARSVFTGLQNAILEMKE  256 (260)
T ss_dssp             HHTTCEEEE------C---TT-CCTTTTHHHH----TCTTCCEEEECHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHcCCEEec------C---CC-CCHHHHHHHH----hCCCCeEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence            999999872      1   22 2333343332    33 56777774     3344444455555443

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=81.47  E-value=16  Score=34.21  Aligned_cols=119  Identities=11%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC--Ch---------------hhHHHHHHc
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP--NL---------------KGFEAAIAA  213 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--~~---------------~di~~a~~~  213 (426)
                      .+.++.+.++|++.||+.......+.+.-.+.+++.+.++. .++++.++.+  +.               +.++.|.+.
T Consensus        39 ~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~l  117 (296)
T 2g0w_A           39 PKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-HNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMARLF  117 (296)
T ss_dssp             HHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-TTCEEEEEECBCCCSSTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHH-cCCceEeehhhhccccCChHHHHHHHHHHHHHHHHHHc


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      |++.|.+...         -..+.+...+.+.+++++|  .|+++...-.     +...-.+++.+.++++.+
T Consensus       118 Ga~~v~~g~~---------~~~~~~~~~~~l~~l~~~a--~Gv~l~lE~~-----~~~~~~~~~~~~~l~~~v  174 (296)
T 2g0w_A          118 GVKHINCGLL---------EKIPEEQIIVALGELCDRA--EELIIGLEFM-----PYSGVADLQAAWRVAEAC  174 (296)
T ss_dssp             TCCEEEECCC---------SCCCHHHHHHHHHHHHHHH--TTSEEEEECC-----TTSSSCSHHHHHHHHHHH
T ss_pred             CCCEEEEcCC---------CCCCHHHHHHHHHHHHHHh--cCCEEEEEec-----CCCCCCCHHHHHHHHHHh

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=81.46  E-value=18  Score=33.45  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             CcEEEEeC---C-hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeee-cC-
Q 014369          195 ARLPVLTP---N-LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV-GC-  268 (426)
Q Consensus       195 ~~l~~l~~---~-~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~f-g~-  268 (426)
                      .++.+++.   . .+-++.+.++|++.|-++..-..       ..+    -+.+.++.+.+++.|+++... ...+ +. 
T Consensus        11 ~~lg~~t~~~~~l~~~l~~~~~~G~~~vEl~~~~~~-------~~~----~~~~~~~~~~l~~~gl~~~~~-~~~~~g~~   78 (290)
T 3tva_A           11 WPIGVFTSVDAGLGVHLEVAQDLKVPTVQVHAPHPH-------TRT----REHAQAFRAKCDAAGIQVTVI-FGGFDGES   78 (290)
T ss_dssp             SCEEEEEESSSSSSBCHHHHHHTTCSEEEEECCCGG-------GCS----HHHHHHHHHHHHHTTCEEEEE-ECCCTTCC
T ss_pred             eeEEEEecCCCCHHHHHHHHHHcCCCEEEecCCCCC-------cCC----HHHHHHHHHHHHHcCCEEEEE-eeccCCcc
Confidence            45555542   2 35689999999999999864211       112    123456677788999987642 2111 11 


Q ss_pred             -------------CCCC--CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHh---c--CCceEE
Q 014369          269 -------------PVEG--AIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAV---V--PVEKLA  325 (426)
Q Consensus       269 -------------pd~~--r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~---~--p~~~i~  325 (426)
                                   ++..  ....+.+.+.++.+.++|+..|.+.  .|..   .......+++.+++.   .  -++.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~--~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~  156 (290)
T 3tva_A           79 YADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLH--IGFVPESSSPDYSELVRVTQDLLTHAANHGQAVH  156 (290)
T ss_dssp             CSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEEC--CCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc--CCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence                         1110  1123677778888889999998873  1211   334444444444432   2  145789


Q ss_pred             EEeCCCcCcHHHHHHHHH
Q 014369          326 VHLHDTYGQSLPNILISL  343 (426)
Q Consensus       326 ~H~HNd~GlA~ANaLaAl  343 (426)
                      +|.|.+..-.+...+.++
T Consensus       157 lE~~~~~~~~~~~l~~~~  174 (290)
T 3tva_A          157 LETGQESADHLLEFIEDV  174 (290)
T ss_dssp             EECCSSCHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHhc
Confidence            998864333333344444

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=81.45  E-value=3.4  Score=39.91  Aligned_cols=82  Identities=13%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEE-EeCCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAV-HLHDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~-H~HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+ -++|+..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G   95 (297)
T 2rfg_A           16 GQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG   95 (297)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   5788888899998887653 344444 45677888888999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        96 adavlv~  102 (297)
T 2rfg_A           96 ADAVLCV  102 (297)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9987554

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}

Probab=81.34  E-value=12  Score=36.73  Aligned_cols=129  Identities=14%  Similarity=0.161  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEE-----cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-C
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-G  346 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l-----~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-G  346 (426)
                      ..+|+++++-+..+.++||..+=|     .|-.....|+.++++++.||++.|. .|.+-..-..++....=++.+.. .
T Consensus        28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-iI~~TTgg~~~~~~eerla~~~~~~  106 (311)
T 3e49_A           28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA-VINLTTGGSPHMTVEERLRPATHYM  106 (311)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC-EEEECSCSCTTSCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-EEEECCCCCCCCCHHHHHHHHHhcC
Confidence            468899999999999999887655     3566788999999999999998774 46666666666777666666633 5


Q ss_pred             CCEEeecccC--CCCCCCCCC---------------------CCCcccHHHHHHHHHhCCCCCC---cChhhHHHHHHHH
Q 014369          347 ISTVDCSVAG--LGGCPYAKG---------------------ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFI  400 (426)
Q Consensus       347 a~~VD~Sv~G--lGecP~a~g---------------------raGNa~lEevv~~L~~lG~~~~---iDl~~L~~la~~v  400 (426)
                      -++....++-  +|..|++..                     ......+++++..++..|+.+.   +|...|..+..++
T Consensus       107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~  186 (311)
T 3e49_A          107 PELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFKNTFADIEFILKTCGGNGTRFEFECYDTSHLYNLAHFV  186 (311)
T ss_dssp             CSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHH
T ss_pred             CCeeeecCCCcccccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeeEEEEECHHHHHHHHHHH
Confidence            5555333222  332121100                     0112347888888888898754   7999999988877


Q ss_pred             HH
Q 014369          401 NK  402 (426)
Q Consensus       401 ~~  402 (426)
                      .+
T Consensus       187 ~~  188 (311)
T 3e49_A          187 DR  188 (311)
T ss_dssp             HT
T ss_pred             Hc
Confidence            65

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=81.29  E-value=35  Score=33.97  Aligned_cols=127  Identities=12%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEE-EeCChhhHHHHHHcCCCEEEEeccC---
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA---  224 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~~~~di~~a~~~Gv~~V~i~~~~---  224 (426)
                      ..+.++.+.++|++.||+.....   .|  ....++++.+++ .++..+.+ -+.+.++++.+.++|+|.|.+....   
T Consensus       154 ~~~~a~~~~~~G~d~i~i~~~~g---~~--~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~  228 (404)
T 1eep_A          154 TIERVEELVKAHVDILVIDSAHG---HS--TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSI  228 (404)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCC---SS--HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTT
T ss_pred             HHHHHHHHHHCCCCEEEEeCCCC---Ch--HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcC
Confidence            35567778899999999832111   11  123455555554 34555553 3456788999999999999883211   


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      .......+.+...   ++.+..+.+.++..+++|.+         +.+-.+++.+.++.    ++||+.+.+.
T Consensus       229 ~~~~~~~~~g~p~---~~~l~~v~~~~~~~~ipVia---------~GGI~~~~d~~~al----a~GAd~V~iG  285 (404)
T 1eep_A          229 CTTRIVAGVGVPQ---ITAICDVYEACNNTNICIIA---------DGGIRFSGDVVKAI----AAGADSVMIG  285 (404)
T ss_dssp             SHHHHHHCCCCCH---HHHHHHHHHHHTTSSCEEEE---------ESCCCSHHHHHHHH----HHTCSEEEEC
T ss_pred             cCccccCCCCcch---HHHHHHHHHHHhhcCceEEE---------ECCCCCHHHHHHHH----HcCCCHHhhC
Confidence            0111112233322   23333444444445666541         23445666655543    4798888774

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=81.23  E-value=23  Score=34.27  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=10.1

Q ss_pred             CCcccHHHHHHHHHh
Q 014369          367 SGNVATEDVVYMLSG  381 (426)
Q Consensus       367 aGNa~lEevv~~L~~  381 (426)
                      .+|...+.++.+.+.
T Consensus       215 ~an~~P~~~~~l~~a  229 (316)
T 3e96_A          215 LVNLLPQKAVEMLEA  229 (316)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHH
Confidence            567777777766654

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=81.09  E-value=15  Score=36.19  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  284 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~  284 (426)
                      +.++.+.+.|++.|.+.....+                  .+.++.+++.|+.+...+           .+++    .++
T Consensus       113 ~~~~~~~~~g~~~V~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~t~~----~a~  159 (369)
T 3bw2_A          113 AKLAVLLDDPVPVVSFHFGVPD------------------REVIARLRRAGTLTLVTA-----------TTPE----EAR  159 (369)
T ss_dssp             HHHHHHHHSCCSEEEEESSCCC------------------HHHHHHHHHTTCEEEEEE-----------SSHH----HHH
T ss_pred             HHHHHHHhcCCCEEEEeCCCCc------------------HHHHHHHHHCCCeEEEEC-----------CCHH----HHH
Confidence            4578888999999988654211                  134455566787765322           1333    355


Q ss_pred             HHHhCCCCEEEEcCC-----CCCCCH--------HHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 014369          285 ELHDMGCFEISLGDT-----IGVGTP--------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV  350 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT-----~G~~~P--------~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~V  350 (426)
                      .+.++|+|.|.+--.     .|...|        .....+++.+++.+.. +|..=    =|. -..|+.+++.+||+.|
T Consensus       160 ~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~i-PViaa----GGI~~~~~~~~~l~~GAd~V  234 (369)
T 3bw2_A          160 AVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDI-PVVAA----GGIMRGGQIAAVLAAGADAA  234 (369)
T ss_dssp             HHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSS-CEEEE----SSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCc-eEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            677899999988321     232221        2235677788776532 34332    244 3478888999999988


Q ss_pred             eec
Q 014369          351 DCS  353 (426)
Q Consensus       351 D~S  353 (426)
                      ...
T Consensus       235 ~vG  237 (369)
T 3bw2_A          235 QLG  237 (369)
T ss_dssp             EES
T ss_pred             EEC
Confidence            754

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=81.03  E-value=19  Score=34.06  Aligned_cols=120  Identities=8%  Similarity=0.016  Sum_probs=67.0

Q ss_pred             hHHHHHHcCCCEEEEecc-CChHHHhhhcCCCHHHH-HHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC--C----CCHH
Q 014369          206 GFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDS-LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--A----IPPS  277 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~-~Sd~~~~~~~~~s~~e~-l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~--r----~~~~  277 (426)
                      -++.+.++|.+.|-++.. ...   ...++...+.. -+.+.++.+.+++.|+++.. +.  ++.+...  .    ...+
T Consensus        41 ~l~~aa~~G~~~VEl~~~~~~~---~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~--~~~~~~~~~~~~~~~~~~  114 (305)
T 3obe_A           41 GLNRLAKAGYTDLEIFGYREDT---GKFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SH--LTPSLREYTKENMPKFDE  114 (305)
T ss_dssp             HHHHHHHHTCCEEEECCBCTTT---CCBCCC----CCCBCHHHHHHHHHHTTCEEEE-EB--CCCSCCCCCGGGHHHHHH
T ss_pred             HHHHHHHcCCCEEEeccccccc---ccccCcCcccccccCHHHHHHHHHHCCCeEEE-ee--ccccccccchhhHHHHHH
Confidence            467888899999999853 000   00011111100 00234556677889998752 21  1111110  0    1135


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-----CCceEEEEeCCC
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDT  331 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-----p~~~i~~H~HNd  331 (426)
                      .+.+.++.+.++|+..|.++-......+.....+++.+++..     -++.|.+|-|+.
T Consensus       115 ~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  173 (305)
T 3obe_A          115 FWKKATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGILWGYHNHSN  173 (305)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCEEEEECCSG
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence            667778888889999999863222245666666666655432     145899999975

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=80.91  E-value=37  Score=31.82  Aligned_cols=168  Identities=14%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhh
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS  231 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~  231 (426)
                      +.++.+.+.|.|.||+|.-..   + ...+..++++.+++ .++.+..+..+.+.+    ..|+|-+-+..=.+.-    
T Consensus        27 ~~l~~~~~~GtDaI~vGgs~g---v-t~~~~~~~v~~ik~-~~~Piil~p~~~~~~----~~gaD~il~pslln~~----   93 (235)
T 3w01_A           27 DDLDAICMSQTDAIMIGGTDD---V-TEDNVIHLMSKIRR-YPLPLVLEISNIESV----MPGFDFYFVPTVLNST----   93 (235)
T ss_dssp             HHHHHHHTSSCSEEEECCSSC---C-CHHHHHHHHHHHTT-SCSCEEEECCCSTTC----CTTCSEEEEEEETTBS----
T ss_pred             HHHHHHHHcCCCEEEECCcCC---c-CHHHHHHHHHHhcC-cCCCEEEecCCHHHh----hcCCCEEEEccccCCC----
Confidence            345567899999999996221   1 01123344444444 444444455555443    3489977766321110    


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhcCC-----cEE--EEEEeeecCCCCCCC---------CHHHHHHHHHHHHh-CCCCEE
Q 014369          232 NINCSIEDSLVRYRAVAHAAKVLSI-----PVR--GYVSCVVGCPVEGAI---------PPSKVAYVAKELHD-MGCFEI  294 (426)
Q Consensus       232 ~~~~s~~e~l~~~~~~v~~Ak~~G~-----~v~--~~v~~~fg~pd~~r~---------~~~~l~~~~~~l~~-~Gad~I  294 (426)
                      +    .+...   ..-++.+++.|+     ++.  +|+..   .|+.+..         +++.++..+..+.+ +|-..|
T Consensus        94 ~----~~~i~---g~~~~a~~~~gl~~~~~e~i~~gYivv---~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~v  163 (235)
T 3w01_A           94 D----VAFHN---GTLLEALKTYGHSIDFEEVIFEGYVVC---NADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVM  163 (235)
T ss_dssp             S----GGGTT---HHHHHHHHHHGGGCCGGGEEEEEEEEC---CSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             C----cchhh---hHHHHHHHHcCCCCcccceeeeeEEEE---CCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEE
Confidence            0    01111   122233677787     654  45543   2332211         46677777664444 488888


Q ss_pred             EEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       295 ~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+.- .|.--   -.++++.+++..++.++.+=    +|-...-....+..|||.|
T Consensus       164 Y~e~-sG~~g---~~~~v~~ir~~~~~~pv~vG----fGI~~~e~a~~~~~gAD~V  211 (235)
T 3w01_A          164 YIEY-SGIYG---DVSKVQAVSEHLTETQLFYG----GGISSEQQATEMAAIADTI  211 (235)
T ss_dssp             EEEC-TTSCC---CHHHHHHHHTTCSSSEEEEE----SCCCSHHHHHHHHTTSSEE
T ss_pred             EEec-CCCcC---CHHHHHHHHHhcCCCCEEEE----CCcCCHHHHHHHHcCCCEE
Confidence            8866 67633   36788888887744444432    2333333344455588866

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=80.87  E-value=11  Score=34.63  Aligned_cols=122  Identities=10%  Similarity=0.014  Sum_probs=58.8

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE---EEEEEe--eecCCCCC--CCCHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV---RGYVSC--VVGCPVEG--AIPPS  277 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v---~~~v~~--~fg~pd~~--r~~~~  277 (426)
                      +-++.+.+.|++.|.++... + +.-.....+.    +.+.++.+.++++|+++   .+...+  .++.++..  ....+
T Consensus        16 ~~l~~~~~~G~~~iEl~~~~-~-~~~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~   89 (287)
T 2x7v_A           16 RVPQDTVNIGGNSFQIFPHN-A-RSWSAKLPSD----EAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVE   89 (287)
T ss_dssp             GHHHHHHHTTCSEEEECSCC-C-SSSCCCCCCH----HHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCC-c-ccccccCCCH----HHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHH
Confidence            45678888899988886421 1 0000001111    22345556677788873   321110  01111100  01124


Q ss_pred             HHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHHHHH---hcCCceEEEEeCCCc
Q 014369          278 KVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMA---VVPVEKLAVHLHDTY  332 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~--DT~G~~~P~~v~~li~~l~~---~~p~~~i~~H~HNd~  332 (426)
                      .+.+.++.+.++|+..|.+.  ...+.........+++.+++   ...++.|.+|.|+..
T Consensus        90 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~  149 (287)
T 2x7v_A           90 LLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQK  149 (287)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCC
Confidence            56667777778888887762  11121122233344444433   223457888888653

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=80.84  E-value=25  Score=31.20  Aligned_cols=109  Identities=9%  Similarity=-0.014  Sum_probs=66.3

Q ss_pred             cCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 014369          213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  290 (426)
Q Consensus       213 ~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G  290 (426)
                      .|+|.+-+..+.+               +..-.+.++..|+.  +.++.+++...        ..+++   +++.+.++|
T Consensus        24 ~~~diie~G~p~~---------------~~~g~~~i~~ir~~~~~~~i~~~~~~~--------~~~~~---~~~~~~~~G   77 (211)
T 3f4w_A           24 DDVDIIEVGTPFL---------------IREGVNAIKAIKEKYPHKEVLADAKIM--------DGGHF---ESQLLFDAG   77 (211)
T ss_dssp             GGCSEEEECHHHH---------------HHHTTHHHHHHHHHCTTSEEEEEEEEC--------SCHHH---HHHHHHHTT
T ss_pred             cCccEEEeCcHHH---------------HhccHHHHHHHHHhCCCCEEEEEEEec--------cchHH---HHHHHHhcC
Confidence            4788877765311               12223455666655  66776665532        12232   477888999


Q ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       291 ad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      +|.|.+.+..+   ++.+.++++.+++. + .++.+-+++- .....-+..+.++|+++|-+.
T Consensus        78 ad~v~v~~~~~---~~~~~~~~~~~~~~-g-~~~~v~~~~~-~t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           78 ADYVTVLGVTD---VLTIQSCIRAAKEA-G-KQVVVDMICV-DDLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             CSEEEEETTSC---HHHHHHHHHHHHHH-T-CEEEEECTTC-SSHHHHHHHHHHHTCCEEEEE
T ss_pred             CCEEEEeCCCC---hhHHHHHHHHHHHc-C-CeEEEEecCC-CCHHHHHHHHHHcCCCEEEEc
Confidence            99999988753   46667778777764 3 2444432221 223455788899999998543

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}

Probab=80.57  E-value=11  Score=36.92  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEE-----cCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHc-C
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-G  346 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l-----~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~a-G  346 (426)
                      ..+|+++++-+..+.++||..+=|     .|-.....|+.++++++.||++.|. .|.+-..-..++....=++.+.. .
T Consensus        28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-iI~~TTgg~~~~~~eerla~~~~~~  106 (311)
T 3e02_A           28 PITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA-ILNITTGGGLGMSLDERLAPARAAR  106 (311)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC-EEEECSSCSTTCCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-EEEECCCCCCCCCHHHHHHHHHhcC
Confidence            468899999999999999987655     3566788999999999999998774 47666666666777666776633 5


Q ss_pred             CCEEeecccC--CCCCCCCC------------------C---CCCcccHHHHHHHHHhCCCCCC---cChhhHHHHHHHH
Q 014369          347 ISTVDCSVAG--LGGCPYAK------------------G---ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFI  400 (426)
Q Consensus       347 a~~VD~Sv~G--lGecP~a~------------------g---raGNa~lEevv~~L~~lG~~~~---iDl~~L~~la~~v  400 (426)
                      -++....++-  +|..|++.                  .   ......+++++..++..|+.+.   +|...|..+..++
T Consensus       107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~  186 (311)
T 3e02_A          107 PEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFECYDVGHLYNLAHFV  186 (311)
T ss_dssp             CSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHH
T ss_pred             CCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHH
Confidence            5554333221  22112110                  0   0112347888888888898754   7999999888877


Q ss_pred             HH
Q 014369          401 NK  402 (426)
Q Consensus       401 ~~  402 (426)
                      .+
T Consensus       187 ~~  188 (311)
T 3e02_A          187 DR  188 (311)
T ss_dssp             HT
T ss_pred             Hc
Confidence            65

>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*

Probab=80.45  E-value=49  Score=32.96  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             cCCCCCCchhhhHHHHhhc---CCCC-ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccc
Q 014369          103 YNSNCNDKDIRDITNKFLK---GIPR-FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ  178 (426)
Q Consensus       103 ~~s~~~~~~~~~~~~~~~~---~~p~-~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~  178 (426)
                      +.+|+--.+...+..++..   .+++ .+++.=.        .+. .+   -..|++.|.+.|+ .+++.+         
T Consensus        31 ~~tP~~vidl~~i~~N~~~l~~~~~~~~~~l~~a--------vKa-n~---~~~v~~~l~~~G~-g~~vas---------   88 (425)
T 2qgh_A           31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYA--------LKA-NS---NLSILSLLAHLES-GADCVS---------   88 (425)
T ss_dssp             CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEE--------GGG-CC---CHHHHHHHHHTTC-EEEESS---------
T ss_pred             hCCCEEEEEHHHHHHHHHHHHHhcCcCCCEEEEE--------ecc-CC---CHHHHHHHHHcCC-eEEEeC---------
Confidence            6778877777677666532   3443 2222111        111 11   3678899999998 777753         


Q ss_pred             ccCHHHHHHHhHh-cCCCcEEEEe-CC--hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc
Q 014369          179 LADARDVMEAVRD-LEGARLPVLT-PN--LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  254 (426)
Q Consensus       179 ~~D~~~v~~~i~~-~~~~~l~~l~-~~--~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~  254 (426)
                         ..|+....+. ++. ....+. +.  ..+++.+++.|+..+.+ .+                 ++.+..+.+.|++.
T Consensus        89 ---~~E~~~~~~~G~~~-~~i~~~g~~k~~~~i~~a~~~gv~~i~v-ds-----------------~~el~~l~~~a~~~  146 (425)
T 2qgh_A           89 ---IGEIQRALKAGIKP-YRIVFSGVGKSAFEIEQALKLNILFLNV-ES-----------------FMELKTIETIAQSL  146 (425)
T ss_dssp             ---HHHHHHHHHTTCCG-GGEEECCTTCCHHHHHHHHHTTCSEEEE-CS-----------------HHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCCh-hHEEEcCCCCCHHHHHHHHHCCCCEEEe-CC-----------------HHHHHHHHHHHHhc
Confidence               2344444443 222 323443 33  57899999999875544 22                 23344445566666


Q ss_pred             CCcEEEEEE
Q 014369          255 SIPVRGYVS  263 (426)
Q Consensus       255 G~~v~~~v~  263 (426)
                      |..+.+.|-
T Consensus       147 ~~~~~v~lr  155 (425)
T 2qgh_A          147 GIKARISIR  155 (425)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCceEEEE
Confidence            766655454

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=80.42  E-value=26  Score=33.90  Aligned_cols=93  Identities=14%  Similarity=0.053  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCC--eEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEE--eCChhhHHHHHHcC-CCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLP--VVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKGFEAAIAAG-AKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~--~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~~~~di~~a~~~G-v~~V  218 (426)
                      .++.++-+++++.|.+.|+.  .||--.+  +      .|. +.++.+++..++.+.+-  +.+..+++.+++.| ++.|
T Consensus       192 ~~~~~~a~~~~~~l~~~~i~~~~iE~P~~--~------~~~-~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v  262 (345)
T 2zad_A          192 GYTQKEAVEFARAVYQKGIDIAVYEQPVR--R------EDI-EGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYV  262 (345)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCCSEEECCSC--T------TCH-HHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCeeeeeCCCC--c------ccH-HHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence            46889999999999999999  9995432  1      233 33444543234444331  23678888888776 5777


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEE
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  259 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~  259 (426)
                      .+=.             .+ ..+....++++.|+++|+.+.
T Consensus       263 ~ik~-------------~~-GGit~~~~i~~~A~~~g~~~~  289 (345)
T 2zad_A          263 NIKL-------------MK-SGISDALAIVEIAESSGLKLM  289 (345)
T ss_dssp             EECH-------------HH-HHHHHHHHHHHHHHTTTCEEE
T ss_pred             EEec-------------cc-ccHHHHHHHHHHHHHcCCeEE
Confidence            7621             12 457778899999999999876

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=80.39  E-value=9.8  Score=35.64  Aligned_cols=70  Identities=13%  Similarity=0.065  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+++...++++++.+.|++.|.+.-+    +|. ..+.|+.+++++|+..++.-   +. +-..-+-.|+++||+.|.+
T Consensus        43 ~~~~~a~~~a~al~~gGi~~iEvt~~----t~~-a~e~I~~l~~~~~~~~iGaG---TV-lt~~~a~~Ai~AGA~fIvs  112 (232)
T 4e38_A           43 DNAEDIIPLGKVLAENGLPAAEITFR----SDA-AVEAIRLLRQAQPEMLIGAG---TI-LNGEQALAAKEAGATFVVS  112 (232)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETT----STT-HHHHHHHHHHHCTTCEEEEE---CC-CSHHHHHHHHHHTCSEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC----CCC-HHHHHHHHHHhCCCCEEeEC---Cc-CCHHHHHHHHHcCCCEEEe
Confidence            46788999999999999999999654    343 35778889999987656543   33 3478889999999999853

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=80.23  E-value=13  Score=38.14  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=85.4

Q ss_pred             CHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc
Q 014369          181 DARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  257 (426)
Q Consensus       181 D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~  257 (426)
                      |++.+...++.+   .++.+...+.+.+-++++++++.+...+..++++               +++++++..|++.|..
T Consensus       139 dpe~~~~vVk~V~e~~dvPL~IDS~dpevleaALea~a~~~plI~sat~---------------dn~e~m~~lAa~y~~p  203 (446)
T 4djd_C          139 DPAAFKAAVASVAAATQLNLVLMADDPDVLKEALAGVADRKPLLYAATG---------------ANYEAMTALAKENNCP  203 (446)
T ss_dssp             STHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHGGGGGGCCEEEEECT---------------TTHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHHhhcCcCCeeEecch---------------hhHHHHHHHHHHcCCc
Confidence            445555555543   4566666678888899999988765444444432               2345677788899988


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHh----------cCCceEEE
Q 014369          258 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAV----------VPVEKLAV  326 (426)
Q Consensus       258 v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~----------~p~~~i~~  326 (426)
                      |.+  +    .+     +.+.+.++.+.+.++|++.|.|==++ |..   ...+....+|+.          +|.  |.+
T Consensus       204 Vi~--~----~~-----dl~~lkelv~~a~~~GI~~IvLDPG~~g~~---~t~~~~~~iRr~AL~~~d~~LgyPv--i~~  267 (446)
T 4djd_C          204 LAV--Y----GN-----GLEELAELVDKIVALGHKQLVLDPGARETS---RAIADFTQIRRLAIKKRFRSFGYPI--IAL  267 (446)
T ss_dssp             EEE--E----CS-----SHHHHHHHHHHHHHTTCCCEEEECCCCSHH---HHHHHHHHHHHHHHHSCCGGGCSCB--EEE
T ss_pred             EEE--E----ec-----cHHHHHHHHHHHHHCCCCcEEECCCchhHH---HHHHHHHHHHHHhhhccCcccCCCE--Eec
Confidence            763  2    11     68899999999999999877554333 432   222222222332          243  555


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          327 HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       327 H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      -...|-=+-..-+...+..|+++|
T Consensus       268 ~sr~d~~~E~t~A~~~i~kga~Iv  291 (446)
T 4djd_C          268 TTAANPLDEVLQAVNYVTKYASLV  291 (446)
T ss_dssp             CCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred             cCCccHHHHHHHHHHHHHcCCeEE
Confidence            566553333344455567888876

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=80.20  E-value=43  Score=32.83  Aligned_cols=117  Identities=9%  Similarity=-0.006  Sum_probs=74.1

Q ss_pred             hHHHHhhcCCCCccE-EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc
Q 014369          114 DITNKFLKGIPRFVK-IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL  192 (426)
Q Consensus       114 ~~~~~~~~~~p~~V~-I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~  192 (426)
                      .+...+++..+..+. .+|.     .+    .++.++-+++++.|.+.|++.||-.++  +      .|. +.++.+++.
T Consensus       188 e~v~avr~a~g~d~~l~vDa-----n~----~~~~~~a~~~~~~l~~~~i~~iE~P~~--~------~~~-~~~~~l~~~  249 (382)
T 1rvk_A          188 KACAAVREAVGPDIRLMIDA-----FH----WYSRTDALALGRGLEKLGFDWIEEPMD--E------QSL-SSYKWLSDN  249 (382)
T ss_dssp             HHHHHHHHHHCTTSEEEEEC-----CT----TCCHHHHHHHHHHHHTTTCSEEECCSC--T------TCH-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEC-----CC----CCCHHHHHHHHHHHHhcCCCEEeCCCC--h------hhH-HHHHHHHhh
Confidence            444555555544443 3454     22    468899999999999999999996542  1      233 334445533


Q ss_pred             CCCcEEEE--eCC-hhhHHHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE
Q 014369          193 EGARLPVL--TPN-LKGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  261 (426)
Q Consensus       193 ~~~~l~~l--~~~-~~di~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~  261 (426)
                      .++.+.+-  ..+ ..+++.+++.| ++.|.+=..             .---+....++++.|+++|+.+...
T Consensus       250 ~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~-------------~~GGit~~~~i~~~A~~~g~~~~~~  309 (382)
T 1rvk_A          250 LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN-------------DVGGITPALKTMHLAEAFGMECEVH  309 (382)
T ss_dssp             CSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH-------------HHTSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch-------------hcCCHHHHHHHHHHHHHcCCeEeec
Confidence            34444432  245 78899988876 577776221             0112566778999999999998743

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=80.09  E-value=31  Score=33.41  Aligned_cols=79  Identities=10%  Similarity=-0.031  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCC-C-CCHHHHHHHHHHHHh-CCCC--EEEEcCC-CCC-CCHHHHHHHHHHH
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-A-IPPSKVAYVAKELHD-MGCF--EISLGDT-IGV-GTPGTVVPMLEAV  315 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r-~~~~~l~~~~~~l~~-~Gad--~I~l~DT-~G~-~~P~~v~~li~~l  315 (426)
                      ...+.++.|++.|.....     .-.|.-. + .+.+.+.+..+.+.+ .+..  .-+++.. .|+ +.|+.+.+|    
T Consensus        94 ~ai~la~~a~~~Gadavl-----v~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~L----  164 (318)
T 3qfe_A           94 QVLEHINDASVAGANYVL-----VLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTI----  164 (318)
T ss_dssp             HHHHHHHHHHHHTCSEEE-----ECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCEEE-----EeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHH----
Confidence            344556667777776431     1134222 1 356666666655544 2333  3334443 366 455444443    


Q ss_pred             HHhcCCceEEE-EeCCC
Q 014369          316 MAVVPVEKLAV-HLHDT  331 (426)
Q Consensus       316 ~~~~p~~~i~~-H~HNd  331 (426)
                      .+++|.+ +++ ....|
T Consensus       165 a~~~pnI-vgiKdssgd  180 (318)
T 3qfe_A          165 ARKNPNV-VGVKLTCAS  180 (318)
T ss_dssp             HHHCTTE-EEEEESSCC
T ss_pred             HhhCCCE-EEEEeCCCC
Confidence            3345653 555 33444

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=80.08  E-value=5.1  Score=39.20  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHH----HHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPML----EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li----~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .+.++++...++|++.|.+.|+.|.   +.|....+++    +.+.+.+... ..+|+.-+.+.-   .-.-.+.|++.+
T Consensus       191 ~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~-~iih~~g~~~~~---l~~~~~~g~d~i  266 (348)
T 4ay7_A          191 ASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSV-TVLHICGNVNPI---LSDMADCGFEGL  266 (348)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSE-EEEECCSCCHHH---HHHHHTSCCSEE
T ss_pred             HHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCC-cEEEecCCcHHH---HHHHHHhccccc
Confidence            3445566677899999999999774   8998887764    4455555553 346877543322   122236788876


Q ss_pred             e
Q 014369          351 D  351 (426)
Q Consensus       351 D  351 (426)
                      +
T Consensus       267 ~  267 (348)
T 4ay7_A          267 S  267 (348)
T ss_dssp             E
T ss_pred             c
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1rqba2	303	c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-	7e-42
d1sr9a2	310	c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu	5e-40
d1nvma2	289	c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas	8e-26

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

 Score =  147 bits (372), Expect = 7e-42
 Identities = 52/289 (17%), Positives = 102/289 (35%), Gaps = 25/289 (8%)

Query: 124 PRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           PR V I E+  RD  Q+   T +     V     + ++G   VE     +     +  + 
Sbjct: 8   PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67

Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
                        RL      +      +    + +  +   ++      ++ S E+ + 
Sbjct: 68  DPWE---------RLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD 118

Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--------PPSKVAYVAKELHDMGCFEI 294
            +R         ++          G   +G I               +A +L DMG   I
Sbjct: 119 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSI 178

Query: 295 SLGDTIGVGTPGTVVPMLEAVM-AVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS 353
           +L D   +  P     +++A+        ++ +H H T G +  +++ +++ G+  VD +
Sbjct: 179 ALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTA 238

Query: 354 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 402
           ++ +   P      G+  TE V  ML G G  TN+D  +L    D    
Sbjct: 239 ISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKA 281

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  143 bits (360), Expect = 5e-40
 Identities = 44/316 (13%), Positives = 87/316 (27%), Gaps = 22/316 (6%)

Query: 113 RDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FV 171
           R   ++ +   P +     V  RDG Q   + +    K  +   LV  G   +E      
Sbjct: 1   RTWPDRVIDRAPLWC---AVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSA 57

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEA---- 227
           S      + +  +      D+    L    P L        +GA    +    S +    
Sbjct: 58  SQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQR 117

Query: 228 -----FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282
                 +++ +     D   +    A                  G  +E A         
Sbjct: 118 RVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGE 177

Query: 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA---VHLHDTYGQSLPNI 339
                       +L  T+ + TP      +E +   +   +     +H H+  G ++   
Sbjct: 178 VIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAA 237

Query: 340 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDF 399
            +    G   ++  + G G        +GNV    +   L   GV+  +D   +      
Sbjct: 238 ELGFAAGADRIEGCLFGNG------ERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRT 291

Query: 400 INKHLGRPSGSKTAIA 415
           +      P   +    
Sbjct: 292 VEYCNQLPVHERHPYG 307

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

 Score =  103 bits (258), Expect = 8e-26
 Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 22/285 (7%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQLADARD 184
           + I +V  RDG    ++         + R L  + +  +E       +            
Sbjct: 8   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67

Query: 185 VMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRY 244
            +E +  + G         L             V    +A +A ++     +        
Sbjct: 68  DLEYIEAVAGEISHAQIATLLLPG------IGSVHDLKNAYQAGARVVRVATHCTEADVS 121

Query: 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304
           +     A+ L +   G+        +   IP  K+A   K +   G   I + D+ G  +
Sbjct: 122 KQHIEYARNLGMDTVGF------LMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMS 175

Query: 305 PGTVVPMLEAVMAVVPVEKL-AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA 363
              +   + A  AV+  E    +H H      + N +++++ G   VD S+AG+G     
Sbjct: 176 MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGA-- 233

Query: 364 KGASGNVATEDVVYMLSGLGVETNVDLRKLM-LAGDFINKHLGRP 407
               GN   E  + +   LG     DL  LM  A D +     RP
Sbjct: 234 ----GNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	100.0
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	100.0
d1sr9a2	310	2-isopropylmalate synthase LeuA, catalytic domain	100.0
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	98.11
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	97.4
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	97.16
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	97.1
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	97.01
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	96.88
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	96.63
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	96.62
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.57
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.55
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	96.53
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	96.5
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	96.45
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	96.18
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	95.97
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	95.96
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	95.63
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	95.41
d1dosa_	358	Fructose-bisphosphate aldolase (FBP aldolase) {Esc	95.1
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	94.93
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	94.87
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	94.79
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	94.18
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	94.05
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	93.94
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	93.69
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	93.61
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	93.49
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	93.22
d1qtwa_	285	Endonuclease IV {Escherichia coli [TaxId: 562]}	92.98
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	92.96
d1tv8a_	327	Molybdenum cofactor biosynthesis protein A MoaA {S	92.89
d1xp3a1	297	Endonuclease IV {Bacillus anthracis [TaxId: 1392]}	92.79
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	92.79
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	92.74
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	92.62
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	92.57
d1k77a_	260	Hypothetical protein YgbM (EC1530) {Escherichia co	92.44
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	91.94
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	91.75
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	91.66
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	91.37
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	91.3
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	90.71
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	90.65
d1olta_	441	Oxygen-independent coproporphyrinogen III oxidase	90.59
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	90.54
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.28
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	89.95
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	89.72
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	89.51
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	89.4
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	89.3
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	89.24
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	89.23
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	88.96
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	88.9
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	88.8
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	88.71
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	88.68
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	87.92
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	87.55
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	87.37
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	87.33
d1foba_	334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	87.25
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	86.91
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	86.87
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	86.59
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	86.57
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	86.37
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	85.97
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	85.86
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	85.33
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	85.19
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	85.02
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	84.68
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	84.68
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	84.27
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	84.2
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	83.84
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	83.31
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	83.28
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	83.14
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	82.69
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	82.64
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	82.11
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	81.97
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	81.61
d1j93a_	343	Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic	81.44
d1wcga1	462	Thioglucosidase {Cabbage aphid (Brevicoryne brassi	81.22
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	80.54
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	80.19
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	80.18
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	80.17

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=100.00  E-value=2.1e-54  Score=422.72  Aligned_cols=278  Identities=19%  Similarity=0.229  Sum_probs=241.3

Q ss_pred             CCCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCcccccc--CHHHHHHHhH-hcCCCcE
Q 014369          122 GIPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVR-DLEGARL  197 (426)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~-~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~~~v~~~i~-~~~~~~l  197 (426)
                      .+|++|+|+|||||||+|+. +..|++++|++|++.|+++||+.||+|+|+.++.+|++.  +..+....+. ..+...+
T Consensus         6 ~~p~~i~I~D~tlRDG~Qs~~~~~~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (303)
T d1rqba2           6 SEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRL   85 (303)
T ss_dssp             CCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCE
T ss_pred             CCCCeeEEEECCCcccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhhhHHH
Confidence            68999999999999999985 557999999999999999999999999999887777663  4555555444 5677888


Q ss_pred             EEEeCCh--------------hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEE
Q 014369          198 PVLTPNL--------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  263 (426)
Q Consensus       198 ~~l~~~~--------------~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~  263 (426)
                      .++.+..              ..+......+.+.+++....++              ++.+..+++++++.|..+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~  151 (303)
T d1rqba2          86 QMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMND--------------PRNMAHAMAAVKKAGKHAQGTIC  151 (303)
T ss_dssp             EEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCC--------------THHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhcccccccccccchhhhHHHHHHHHHhhhhHHhhhhhHHH--------------HHHHHHHHHHHHHcCCeEEEEEE
Confidence            8777521              1234556779999998866544              45667888999999999888777


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHH
Q 014369          264 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILIS  342 (426)
Q Consensus       264 ~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaA  342 (426)
                      +.    +..+.+++++.++++.+.++|+++|+|+||+|.++|.+|.++++.+++.+ |+++|++|+|||+|||+||+++|
T Consensus       152 ~~----~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA  227 (303)
T d1rqba2         152 YT----ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKA  227 (303)
T ss_dssp             CC----CSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHH
T ss_pred             ec----CCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcCCcccceeccCchHHHHHHHHHHH
Confidence            54    44567899999999999999999999999999999999999999999998 67789999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCC-CCCcccchhhhh
Q 014369          343 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG-SKTAIALNRIAA  421 (426)
Q Consensus       343 l~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~-~~~pivG~~vf~  421 (426)
                      +++||++||+|++||||      |+||++||+|+.+|+.+|+++++|+++|.+++++++++...-.| .++|+||.++|+
T Consensus       228 ~~aG~~~id~ti~GlG~------~~GN~~te~lv~~L~~~g~~t~idl~~L~~i~~~~~~ir~~y~~~~~~~~v~~~~~~  301 (303)
T d1rqba2         228 IEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFK  301 (303)
T ss_dssp             HHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHH
T ss_pred             HHcCCCEEEECCccCCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCChHHhc
Confidence            99999999999999999      89999999999999999999999999999999999998665445 368999999999


Q ss_pred             hc
Q 014369          422 DA  423 (426)
Q Consensus       422 h~  423 (426)
                      |+
T Consensus       302 h~  303 (303)
T d1rqba2         302 SQ  303 (303)
T ss_dssp             HC
T ss_pred             cC
Confidence            97

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=100.00  E-value=1.5e-53  Score=414.00  Aligned_cols=270  Identities=22%  Similarity=0.269  Sum_probs=233.9

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cccc---cCHHHHHHHhH-hcCCCc
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VPQL---ADARDVMEAVR-DLEGAR  196 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p~~---~D~~~v~~~i~-~~~~~~  196 (426)
                      .+++|+|+|||||||+|+.++.|++++|++|++.|+++||++||+|+++.++.  .+..   ....+..+.+. ..++..
T Consensus         4 ~~kkI~I~D~TlRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~   83 (289)
T d1nvma2           4 PSKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQ   83 (289)
T ss_dssp             CCCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSE
T ss_pred             CCCCeEEEECCcccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhH
Confidence            44779999999999999999999999999999999999999999998865421  1111   12334444444 556778


Q ss_pred             EEEEeC----ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC
Q 014369          197 LPVLTP----NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       197 l~~l~~----~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~  272 (426)
                      +.++..    ..+++..+.+.+++.++++...++.              +.+.+.+++++++|+++.+++      ++.+
T Consensus        84 i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--------------~~~~~~~~~a~~~g~~~~~~~------~~~~  143 (289)
T d1nvma2          84 IATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEA--------------DVSKQHIEYARNLGMDTVGFL------MMSH  143 (289)
T ss_dssp             EEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCG--------------GGGHHHHHHHHHHTCEEEEEE------ESTT
T ss_pred             HHHHHhhhhhhHHHHHHHHHhcccceEEEeehhhh--------------hhHhHHHHHHHHhCCceeeEe------eecc
Confidence            887763    3567888999999999999988764              334577889999999987544      4567


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +.+++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++.+ |+.+|++|+|||+|||+||+++|+++||++||
T Consensus       144 ~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id  223 (289)
T d1nvma2         144 MIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVD  223 (289)
T ss_dssp             SSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred             ccCchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEee
Confidence            89999999999999999999999999999999999999999999998 67789999999999999999999999999999


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHH-HHHhCCCCCCCCcccchh
Q 014369          352 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFI-NKHLGRPSGSKTAIALNR  418 (426)
Q Consensus       352 ~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v-~~~~g~~~~~~~pivG~~  418 (426)
                      +|++||||      |+||++||+|+.+|+++|+++++|+++|.++++.+ ++..+.|+|++||++|..
T Consensus       224 ~si~GlG~------~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~p~~~~~~~vg~~  285 (289)
T d1nvma2         224 ASLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVRVDRETLGLG  285 (289)
T ss_dssp             EBGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSCCSCCHHHHHHH
T ss_pred             ccccccCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCeecCC
Confidence            99999999      99999999999999999999999999999988655 677799999999999954

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.5e-49  Score=386.80  Aligned_cols=280  Identities=16%  Similarity=0.126  Sum_probs=224.6

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc---CCCcEEE
Q 014369          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPV  199 (426)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~---~~~~l~~  199 (426)
                      +.+++.|+|||||||+|+.+..|++++|++|++.|+++||++||+|||...+     .+.+.+.+.....   ......+
T Consensus         8 ~~~~~~~~D~tLRDG~Q~~~~~~~~~~k~~i~~~L~~aGv~~IEvG~p~~s~-----~~~~~~~~~~~~~~~~~~~~~~~   82 (310)
T d1sr9a2           8 IDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQ-----TDFDFVREIIEQGAIPDDVTIQV   82 (310)
T ss_dssp             CCSCCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTCH-----HHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             ccCCCeeeECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHHhccccccceeee
Confidence            5666788899999999999999999999999999999999999999965431     1334444444322   2344555


Q ss_pred             EeCC-hhhHHHH--HHcC--CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-----CCcEEEEEEeeecCC
Q 014369          200 LTPN-LKGFEAA--IAAG--AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-----SIPVRGYVSCVVGCP  269 (426)
Q Consensus       200 l~~~-~~di~~a--~~~G--v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-----G~~v~~~v~~~fg~p  269 (426)
                      +.++ ...++..  ...|  ...+.+..+.+..+.+.+.+.+..+......+....+.+.     +..+.+.    ++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  158 (310)
T d1sr9a2          83 LTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFE----YSPE  158 (310)
T ss_dssp             EEESCHHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEE----EEEE
T ss_pred             eeeechhhhHHHHHhhcCcceeeEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHHHHHHhhcceeEEE----Eecc
Confidence            5543 3333332  2233  3467777888899999999999888776665544333222     2222222    3344


Q ss_pred             CCCCCCHHHHHHHHHHHHh------CCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCC---ceEEEEeCCCcCcHHHHHH
Q 014369          270 VEGAIPPSKVAYVAKELHD------MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNIL  340 (426)
Q Consensus       270 d~~r~~~~~l~~~~~~l~~------~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~---~~i~~H~HNd~GlA~ANaL  340 (426)
                      +.++.+.+.+.+..+.+.+      .|++.|+|+||+|.++|.++.++++.+++.+|.   ++|++|+|||+|||+||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~l  238 (310)
T d1sr9a2         159 SYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAE  238 (310)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhhcCceEEeecccccccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHH
Confidence            5677788888777666544      378999999999999999999999999999974   5799999999999999999


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCCCCCCCCcccch
Q 014369          341 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALN  417 (426)
Q Consensus       341 aAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~~~~~~~pivG~  417 (426)
                      +|+++||++||+|+.|||+      |+||++||+++.+|+.+|++++||+++|.++++++++++|+|+|+++|+||+
T Consensus       239 aA~~aG~~~iD~si~GmG~------~aGN~~tE~lv~~l~~~g~~~~idl~~L~~~~~~v~~~~~~~~~~~~p~vG~  309 (310)
T d1sr9a2         239 LGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGD  309 (310)
T ss_dssp             HHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTCTTTST
T ss_pred             HHHhccCCEEecCCccccc------ccCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCccC
Confidence            9999999999999999999      9999999999999999999999999999999999999999999999999996

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=0.00026  Score=66.30  Aligned_cols=221  Identities=10%  Similarity=0.053  Sum_probs=140.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe----CChhhHHHHHHcCCCEE
Q 014369          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----PNLKGFEAAIAAGAKEV  218 (426)
Q Consensus       143 ~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~~~~di~~a~~~Gv~~V  218 (426)
                      ..++.++.++.++.+.+.|+..+-+.....+..   -...+.+.+.++.++...+.+.+    .+.+.++...++|++.+
T Consensus        71 ~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i  147 (312)
T d1r30a_          71 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH---ERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYY  147 (312)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC---TTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEE
T ss_pred             cccchHHHHHHHHHHHHcCCEEEEEccCCCCCc---hhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeE
Confidence            357899999999999999999887643322110   01244555566544332222221    35678899999999999


Q ss_pred             EEeccCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 014369          219 AIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EIS  295 (426)
Q Consensus       219 ~i~~~~Sd-~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad--~I~  295 (426)
                      .+.+-.++ .+.+..-+.+.++.    .++++.|+++|+++.++++  +|.+    -+.++..+....+.+++.+  .|.
T Consensus       148 ~~~iEs~~~~~~~~~~~~~~~~~----~~~~~~a~~~Gi~~~~~~i--~G~~----et~~d~~~~l~~l~~l~~~~~~i~  217 (312)
T d1r30a_         148 NHNLDTSPEFYGNIITTRTYQER----LDTLEKVRDAGIKVCSGGI--VGLG----ETVKDRAGLLLQLANLPTPPESVP  217 (312)
T ss_dssp             ECCCBSCHHHHHHHCCSSCHHHH----HHHHHHHHHHHCEEECCEE--ECSS----CCHHHHHHHHHHHHSSSSCCSEEE
T ss_pred             ecccchhhhhhccCCCCCCHHHH----HHHHHHHHHhccceecceE--ecCc----CcHHHHHHHHHHHHhcCCCCCeee
Confidence            88765544 44333345555543    4677889999999887776  5543    2356667777777776543  332


Q ss_pred             ------EcCC----CCCCCHHHHHHHHHHHHHhcCCceEEEEe-CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 014369          296 ------LGDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  364 (426)
Q Consensus       296 ------l~DT----~G~~~P~~v~~li~~l~~~~p~~~i~~H~-HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  364 (426)
                            .+.|    .....|.++.++++..|-.+|+..|.+=+ -..+|.  --...|+.+||+.+   +.  |+ .|- 
T Consensus       218 ~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~--~~~~~~L~~Gan~~---~~--~~-~~~-  288 (312)
T d1r30a_         218 INMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANSI---FY--GC-KLL-  288 (312)
T ss_dssp             EEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCH--HHHHHHHHHTCCEE---EC--SS-BSS-
T ss_pred             eccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCH--HHHHHHHhcCCcEE---Ee--cC-ccc-
Confidence                  2444    33457788999999998888974444332 344444  33446899999943   22  22 000 


Q ss_pred             CCCCcccHHHHHHHHHhCCCCC
Q 014369          365 GASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       365 graGNa~lEevv~~L~~lG~~~  386 (426)
                       .+++...++.+.+++.+|..+
T Consensus       289 -t~~~~~~~~~~~~i~~~G~~P  309 (312)
T d1r30a_         289 -TTPNPEEDKDLQLFRKLGLNP  309 (312)
T ss_dssp             -SSBCCCHHHHHHHHHHTTCCS
T ss_pred             -cCCCCCHHHHHHHHHHcCCCc
Confidence             355678899999999999864

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=97.40  E-value=0.0024  Score=60.60  Aligned_cols=191  Identities=17%  Similarity=0.167  Sum_probs=130.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe---CChhhHHHHHHcCCCEEEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT---PNLKGFEAAIAAGAKEVAI  220 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~~~~di~~a~~~Gv~~V~i  220 (426)
                      .++.++...++++-.+...++|=--++..-++.+.  ..-..+..+..-.++.+....   .+.+.+..++++|.+.|.+
T Consensus        24 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~--~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~GftSVMi  101 (305)
T d1rvga_          24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGR--ALTLMAVELAKEARVPVAVHLDHGSSYESVLRALRAGFTSVMI  101 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHH--HHHHHHHHHHHHCSSCEEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCccHHhHccH--HHHHHHHHHHhccCCcEEEeehhccChhhhHHHHhcCCceEEE
Confidence            57888999999999999999864433221111110  001111122222345555433   5788999999999998887


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhCCCC
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~Gad  292 (426)
                      =.|          ..+.+++++..++++++|+..|+.|++-|-..-|.++.        ..++|+...++++   +.|+|
T Consensus       102 DgS----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~---~TgvD  168 (305)
T d1rvga_         102 DKS----------HEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFME---RTGAD  168 (305)
T ss_dssp             CCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHH---HHCCS
T ss_pred             cCc----------cccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHH---HhCcc
Confidence            443          24678999999999999999999999888876555442        1368888777665   57999


Q ss_pred             EEEEc--CCCCCCC----HHHHHHHHHHHHHhcCCceEEEEe-------------------CCCcCcHHHHHHHHHHcCC
Q 014369          293 EISLG--DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHL-------------------HDTYGQSLPNILISLQMGI  347 (426)
Q Consensus       293 ~I~l~--DT~G~~~----P~~v~~li~~l~~~~p~~~i~~H~-------------------HNd~GlA~ANaLaAl~aGa  347 (426)
                      .+.++  -.=|.-.    |.==.++++.+++..+. ||.+|+                   |...|+.-.....|+..|+
T Consensus       169 ~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~-PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV  247 (305)
T d1rvga_         169 YLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPA-PLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGI  247 (305)
T ss_dssp             EEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCS-CEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTE
T ss_pred             HhhhhhhhhhcccCCCCcccchHHHHHHHHhccCC-CeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCe
Confidence            65553  3333321    21224667888887774 799888                   6678999999999999998


Q ss_pred             CEE
Q 014369          348 STV  350 (426)
Q Consensus       348 ~~V  350 (426)
                      .-|
T Consensus       248 ~Ki  250 (305)
T d1rvga_         248 AKI  250 (305)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.16  E-value=0.0025  Score=58.75  Aligned_cols=172  Identities=19%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCC-CCc-cc--cc---------cCHHHHHHHh---HhcCCCcEEEEeC-Ch---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VP--QL---------ADARDVMEAV---RDLEGARLPVLTP-NL---  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~-~p--~~---------~D~~~v~~~i---~~~~~~~l~~l~~-~~---  204 (426)
                      -+.+.-+++++.|++ |++.||+|+|-+ |-. .|  |.         .+.+.+++.+   ++..++.+..|+. |.   
T Consensus        16 P~~~~s~~~l~~l~~-g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~   94 (248)
T d1geqa_          16 PDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYR   94 (248)
T ss_dssp             SCHHHHHHHHHHHGG-GBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccc
Confidence            356777899999975 999999998754 311 12  11         1233444444   3334566666663 31   


Q ss_pred             ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                          +-++.+.++|++.+-+..-.                .+...++.+.++++|+....-+     .|   .++++.+.
T Consensus        95 ~G~~~f~~~~~~~Gv~GliipDLP----------------~eE~~~~~~~~~~~gl~~I~lv-----aP---tt~~~ri~  150 (248)
T d1geqa_          95 AGVRNFLAEAKASGVDGILVVDLP----------------VFHAKEFTEIAREEGIKTVFLA-----AP---NTPDERLK  150 (248)
T ss_dssp             HCHHHHHHHHHHHTCCEEEETTCC----------------GGGHHHHHHHHHHHTCEEEEEE-----CT---TCCHHHHH
T ss_pred             cCHHHHhhhhcccCeeEEeccCCc----------------HHHHHHHHhhccccCcceEEEe-----cc---cchhHHHH
Confidence                34577889999998887421                1233567778899999765322     23   24555655


Q ss_pred             HHHHHHHhCC-CCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHH---HHHHHHHcCCCEE
Q 014369          281 YVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP---NILISLQMGISTV  350 (426)
Q Consensus       281 ~~~~~l~~~G-ad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~A---NaLaAl~aGa~~V  350 (426)
                      .+++..  -| +..++..-++|.-  .|.++.++++.+|+... .|+.+      |.|+.   .+..++.+|||.|
T Consensus       151 ~i~~~s--~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~-~Pv~v------GFGI~~~e~v~~~~~~~ADGv  217 (248)
T d1geqa_         151 VIDDMT--TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICR-NKVAV------GFGVSKREHVVSLLKEGANGV  217 (248)
T ss_dssp             HHHHHC--SSEEEEECCC-------CCCHHHHHHHHHHHHHCS-SCEEE------ESCCCSHHHHHHHHHTTCSEE
T ss_pred             HHHhcC--CCeEEEEecccccccchhhhhhHHHHHHHHhhhcc-cceee------ecccCCHHHHHHHHhcCCCEE
Confidence            555422  22 4455555555543  57899999999999853 46665      44443   2345677888865

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=97.10  E-value=0.0058  Score=55.13  Aligned_cols=149  Identities=19%  Similarity=0.159  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.|.+.|++.||+++-. |       +..+.++.++ +.|++.+.+-+ .+.++++.+.++|++.+.-. .
T Consensus        27 ~~~~a~~~~~al~~~Gi~~iEitl~~-p-------~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP-~   97 (216)
T d1mxsa_          27 REEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP-G   97 (216)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS-S
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECC-C
Confidence            56788999999999999999999742 2       2345566665 56887777654 68999999999999865432 1


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  303 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~  303 (426)
                      .+                   .+++++|++.|+....           +-.+|.++..    +.++|++.+-+       
T Consensus        98 ~~-------------------~~v~~~a~~~~i~~iP-----------Gv~TpsEi~~----A~~~G~~~vKl-------  136 (216)
T d1mxsa_          98 IT-------------------EDILEAGVDSEIPLLP-----------GISTPSEIMM----GYALGYRRFKL-------  136 (216)
T ss_dssp             CC-------------------HHHHHHHHHCSSCEEC-----------EECSHHHHHH----HHTTTCCEEEE-------
T ss_pred             Cc-------------------HHHHHHHHhcCCCccC-----------CcCCHHHHHH----HHHCCCCEEEe-------
Confidence            22                   3788899999998652           2235666444    55899998875       


Q ss_pred             CHHHH---HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          304 TPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       304 ~P~~v---~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      .|...   ..+++.++.-+|+.++-.    +=|....|.-.=+.+|+-
T Consensus       137 FPA~~~~g~~~ikal~~p~p~~~fip----tGGV~~~n~~~yl~~~~v  180 (216)
T d1mxsa_         137 FPAEISGGVAAIKAFGGPFGDIRFCP----TGGVNPANVRNYMALPNV  180 (216)
T ss_dssp             TTHHHHTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHHSTTB
T ss_pred             ccccccccHHHHHHHhcccccCceec----cCCCCHHHHHHHHhcCCe
Confidence            67653   468888888888755433    445556677766776643

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.016  Score=51.50  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH--hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEec
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR--DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~--~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~  222 (426)
                      +.++-+++++.|.+.|++.||+++- +|       +..+.++.++  ..++..+.+-+ .+.++++.++++|++.+. .-
T Consensus        19 ~~~~a~~~~~al~~~Gi~~iEitlr-~p-------~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv-sP   89 (202)
T d1wa3a1          19 SVEEAKEKALAVFEGGVHLIEITFT-VP-------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV-SP   89 (202)
T ss_dssp             SHHHHHHHHHHHHHTTCCEEEEETT-ST-------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE-CS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecC-Cc-------cHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe-CC
Confidence            6788899999999999999999873 23       2344555554  23667766544 688999999999999773 11


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  302 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~  302 (426)
                      ..+                   .++++++++.|+.+..           +-.+|.++..    +.++|++.+-+      
T Consensus        90 ~~~-------------------~~v~~~~~~~~i~~iP-----------Gv~TpsEi~~----A~~~G~~~lK~------  129 (202)
T d1wa3a1          90 HLD-------------------EEISQFCKEKGVFYMP-----------GVMTPTELVK----AMKLGHTILKL------  129 (202)
T ss_dssp             SCC-------------------HHHHHHHHHHTCEEEC-----------EECSHHHHHH----HHHTTCCEEEE------
T ss_pred             CCc-------------------HHHHHHHHhcCCceeC-----------CcCcHHHHHH----HHHCCCCEEEe------
Confidence            111                   3778889999987652           2235665544    45799999887      


Q ss_pred             CCHHHHH--HHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          303 GTPGTVV--PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       303 ~~P~~v~--~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                       .|.++.  .+++.++.-+|+.++-.    +=|-...|...-+++|+..|
T Consensus       130 -fPa~~~G~~~lk~l~~p~p~i~~ip----tGGI~~~n~~~~l~aga~av  174 (202)
T d1wa3a1         130 -FPGEVVGPQFVKAMKGPFPNVKFVP----TGGVNLDNVCEWFKAGVLAV  174 (202)
T ss_dssp             -TTHHHHHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHHHTCSCE
T ss_pred             -cchhhcCHHHHHHHhCcccCCcEEe----eCCCCHHHHHHHHHCCCeEE
Confidence             555542  57888888788755533    33445568888888898866

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.063  Score=48.19  Aligned_cols=208  Identities=12%  Similarity=0.017  Sum_probs=115.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC-------C-------hhhHHH
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-------N-------LKGFEA  209 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-------~-------~~di~~  209 (426)
                      .+|.++.++++   .++|++.||+........++.....+++.+.++. .++++.++..       .       .+-++.
T Consensus        17 ~l~lee~l~~a---~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~-~gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~   92 (271)
T d2q02a1          17 GLSIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYPFNQLTEEVVKKTEGLLRD   92 (271)
T ss_dssp             TSCHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH---HHhCCCEEEEecCcccccccccCCHHHHHHHHHH-cCCcEEEeecccccCCCCHHHHHHHHHHHHH
Confidence            45777765554   6789999999632111112222345666666653 4566666542       1       123567


Q ss_pred             HHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       210 a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+.|++.|+++....      .-....++..+.+.+++++|++.|+.+..  .. .+.+...-.+.+.+.++++.+. .
T Consensus        93 a~~lG~~~v~~~~~~~------~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E~-~~~~~~~~~~~~~~~~li~~~~-~  162 (271)
T d2q02a1          93 AQGVGARALVLCPLND------GTIVPPEVTVEAIKRLSDLFARYDIQGLV--EP-LGFRVSSLRSAVWAQQLIREAG-S  162 (271)
T ss_dssp             HHHHTCSEEEECCCCS------SBCCCHHHHHHHHHHHHHHHHTTTCEEEE--CC-CCSTTCSCCCHHHHHHHHHHHT-C
T ss_pred             HHHcCCcEEEEecCCC------CccchHHHHHHHHHHHHHHhccCCeEEEE--ee-cCCcCcccCCHHHHHHHHHHhC-C
Confidence            7788999998864322      12345677888899999999999987652  21 1112222245667666666553 2


Q ss_pred             CCCEEEEcCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 014369          290 GCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG  368 (426)
Q Consensus       290 Gad~I~l~DT~G~-~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG  368 (426)
                      .+ .+.+ |+.-. .......+.+   ....++--..+|.+|..+.....         +..|.. ..+.     + +.|
T Consensus       163 ~~-g~~~-D~~H~~~~g~~~~~~~---~~l~~~~i~~vH~~d~~~~~~~~---------~~~~~~-r~~~-----~-G~G  221 (271)
T d2q02a1         163 PF-KVLL-DTFHHHLYEEAEKEFA---SRIDISAIGLVHLSGVEDTRPTE---------ALADEQ-RIML-----S-EKD  221 (271)
T ss_dssp             CC-EEEE-EHHHHHHCTTHHHHHH---HHCCGGGEEEEEECBCCCCSCGG---------GCCGGG-CBCC-----C-TTC
T ss_pred             cc-ceec-cchhHHHcCCChHHHH---HHhCcCcEEEEEEEeCCCCCccc---------cccccc-eecc-----C-CCc
Confidence            33 4444 76422 1222222222   22223323667888854322110         011110 0111     1 369


Q ss_pred             cccHHHHHHHHHhCCCCC
Q 014369          369 NVATEDVVYMLSGLGVET  386 (426)
Q Consensus       369 Na~lEevv~~L~~lG~~~  386 (426)
                      +.+...++..|+..|++.
T Consensus       222 ~id~~~i~~~L~~~GY~G  239 (271)
T d2q02a1         222 VMQNYQQVQRLENMGYRG  239 (271)
T ss_dssp             SSCHHHHHHHHHHTTCCS
T ss_pred             ccCHHHHHHHHHHcCCCc
Confidence            999999999999988864

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.63  E-value=0.058  Score=48.57  Aligned_cols=183  Identities=12%  Similarity=0.070  Sum_probs=113.0

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CC---
Q 014369          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN---  203 (426)
Q Consensus       129 I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~---  203 (426)
                      ++|-||=.      ...+.++..++++...+.|+..|-+-    |.|+|      ...   +.++++++.+.+  |.   
T Consensus         7 ~ID~TlL~------~~~t~~~i~~lc~~A~~~~~~aVcV~----P~~v~------~a~---~~l~~vkv~tVigFP~G~~   67 (225)
T d1mzha_           7 YIDNAALK------PHLSEKEIEEFVLKSEELGIYAVCVN----PYHVK------LAS---SIAKKVKVCCVIGFPLGLN   67 (225)
T ss_dssp             GEEEEECC------TTCCHHHHHHHHHHHHHTTCSEEEEC----GGGHH------HHH---HHCSSSEEEEEESTTTCCS
T ss_pred             hhhhccCC------CCCCHHHHHHHHHHHHHhCCcEEEEC----HHHHH------HHH---hhccCCceEEEeccCCCCC
Confidence            45666532      35688999999999999999877763    33332      112   234567777665  31   


Q ss_pred             -----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH
Q 014369          204 -----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  278 (426)
Q Consensus       204 -----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~  278 (426)
                           ...++.|++.|+++|-+.+..+...     .-..+...+.+..+++.+.  |..+-  +..    + .+..+.+.
T Consensus        68 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~--~~~lK--VIl----E-t~~L~~~e  133 (225)
T d1mzha_          68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFK-----SEKYDFVVEELKEIFRETP--SAVHK--VIV----E-TPYLNEEE  133 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHTCT--TSEEE--EEC----C-GGGCCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCeEEEeechhhhh-----cccHHHHHHHHHHHHHhcc--Cceee--hhh----h-hccCCHHH
Confidence                 2467889999999999998654421     1234556666665555553  33332  221    1 23567788


Q ss_pred             HHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          279 VAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       279 l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      +...++.+.++|+|-|--.--.  +..+|++|+.+-+.+..+     +++..----- -+..++.-+++|+++|
T Consensus       134 i~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~~~~-----~~iKasGGIr-t~~~a~~~i~~Ga~Ri  201 (225)
T d1mzha_         134 IKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGR-----IKVKASGGIR-DLETAISMIEAGADRI  201 (225)
T ss_dssp             HHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTS-----SEEEEESSCC-SHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHcccceEeecCCCCCCCCCHHHHHHHHHHhCCC-----ceEECcCCCC-CHHHHHHHHHhchhhe
Confidence            9999999999999966543322  235777776655544332     3333321111 1456777889999987

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.019  Score=51.45  Aligned_cols=150  Identities=21%  Similarity=0.169  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-+++++.|.+.|++.||+++- +|       +..+.++.++ +.|++.+.+-+ .+.++++.+.++|++.+.-.. 
T Consensus        25 ~~~~a~~~~~al~~~Gi~~iEitl~-tp-------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~-   95 (213)
T d1wbha1          25 KLEHAVPMAKALVAGGVRVLNVTLR-TE-------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG-   95 (213)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEESC-ST-------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS-
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC-
Confidence            6778899999999999999999973 33       2345555555 56887776654 688999999999999765432 


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTIG  301 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l--~DT~G  301 (426)
                      .+                   .+++++|+++++.+..-+           .+|.++..    +.++|++.+-+  +++.|
T Consensus        96 ~~-------------------~~v~~~a~~~~i~~iPGv-----------~TpsEi~~----A~~~G~~~vKlFPA~~~G  141 (213)
T d1wbha1          96 LT-------------------EPLLKAATEGTIPLIPGI-----------STVSELML----GMDYGLKEFKFFPAEANG  141 (213)
T ss_dssp             CC-------------------HHHHHHHHHSSSCEEEEE-----------SSHHHHHH----HHHTTCCEEEETTTTTTT
T ss_pred             CC-------------------HHHHHHHHhcCCCccCCc-----------CCHHHHHH----HHHCCCCEEEeccchhcC
Confidence            21                   378889999999875322           34555443    56899998776  33433


Q ss_pred             CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          302 VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      -      ..+++.++.-+|+.++-.    +=|....|.-.=+.+|+.
T Consensus       142 g------~~~lkal~~p~p~~~~~p----tGGV~~~n~~~yl~~g~v  178 (213)
T d1wbha1         142 G------VKALQAIAGPFSQVRFCP----TGGISPANYRDYLALKSV  178 (213)
T ss_dssp             H------HHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTB
T ss_pred             h------HHHHHHhcCcccCCceee----eCCCCHHHHHHHHhCCCE
Confidence            1      357888888788754433    345555677766677754

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.57  E-value=0.0077  Score=55.75  Aligned_cols=176  Identities=21%  Similarity=0.266  Sum_probs=108.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--c---------ccCHHHHHHHhHhc---CCCcEEEEeC-C---
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--Q---------LADARDVMEAVRDL---EGARLPVLTP-N---  203 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~---------~~D~~~v~~~i~~~---~~~~l~~l~~-~---  203 (426)
                      .-+.+.-+++++.|.+.|++.||+|+|-+.+.  .|  |         -.+.+.+++.++++   .+..+..+.. |   
T Consensus        27 ~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~  106 (261)
T d1rd5a_          27 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM  106 (261)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchh
Confidence            45788889999999999999999998754211  01  1         02344455554432   3455555553 3   


Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  283 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~  283 (426)
                      ..+++.+.++|++.+-+..-.                ++...+..+.++++|+....-+     .|   .++.+.+.+++
T Consensus       107 ~~~~~~~~~~GvdG~IipDlp----------------~eE~~~~~~~~~~~gl~~I~lv-----aP---tt~~~Ri~~i~  162 (261)
T d1rd5a_         107 FRSLAKMKEAGVHGLIVPDLP----------------YVAAHSLWSEAKNNNLELVLLT-----TP---AIPEDRMKEIT  162 (261)
T ss_dssp             SCCTHHHHHTTCCEEECTTCB----------------TTTHHHHHHHHHHTTCEECEEE-----CT---TSCHHHHHHHH
T ss_pred             hHHHHHHHhcCceeeeecCcc----------------HHHHHHHHHHHhccccceEEEe-----cc---CCchhHHHHHH
Confidence            246888999999998886421                1223467778899999754222     23   24566666666


Q ss_pred             HHHHhCC-CCEEEEcCCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHH-HHcCCCEE
Q 014369          284 KELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTV  350 (426)
Q Consensus       284 ~~l~~~G-ad~I~l~DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaA-l~aGa~~V  350 (426)
                      +..  -| +..+...=++|.-  .+.++.++++.+|+.. +.||.+=    +|...+--... .++|||.|
T Consensus       163 ~~a--~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vG----FGI~~~e~v~~~~~~gaDGv  226 (261)
T d1rd5a_         163 KAS--EGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVG----FGISKPEHVKQIAQWGADGV  226 (261)
T ss_dssp             HHC--CSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEE
T ss_pred             hcC--cchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEE----cCCCCHHHHHHHHhcCCCEE
Confidence            432  23 3445555666644  5568999999999875 3345442    34444444443 45588755

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.55  E-value=0.01  Score=54.38  Aligned_cols=131  Identities=20%  Similarity=0.168  Sum_probs=88.6

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      +++.|++.|++-|-+.+...+-        ..++.++++.++++.|+++|+.+.+-. +..+.......+++.+...++.
T Consensus        95 sve~a~rlGadaV~~~v~~g~~--------~e~~~l~~~~~v~~e~~~~glP~v~e~-~p~g~~~~~~~~~~~v~~aari  165 (251)
T d1ojxa_          95 SVEEAVSLGASAVGYTIYPGSG--------FEWKMFEELARIKRDAVKFDLPLVVWS-YPRGGKVVNETAPEIVAYAARI  165 (251)
T ss_dssp             CHHHHHHTTCSEEEEEECTTST--------THHHHHHHHHHHHHHHHHHTCCEEEEE-CCCSTTCCCTTCHHHHHHHHHH
T ss_pred             CHHHHHhchhceEEEEEeCCCC--------chHHHHHHHHHHHHHHHHcCCeEEEEE-eecCCccccCCCHHHHHHHHHH
Confidence            6899999999977665543321        134789999999999999999976432 3445455567889999999999


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  351 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD  351 (426)
                      +.++|+|.|.+.=+      .....+-+.+...  .|.+-++-=-..+..--+...-.|+++||..|-
T Consensus       166 a~ElGaDivK~~~p------~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~  227 (251)
T d1ojxa_         166 ALELGADAMKIKYT------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIA  227 (251)
T ss_dssp             HHHHTCSEEEECCC------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhCCCEEEecCC------CcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence            99999999887433      2233333333332  232111112345666667888889999997663

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.037  Score=51.60  Aligned_cols=187  Identities=14%  Similarity=0.149  Sum_probs=124.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH---hcCCCcEEEEe---CChhhHHHHHHcCCCE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT---PNLKGFEAAIAAGAKE  217 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~~~~di~~a~~~Gv~~  217 (426)
                      .+..++...++++-.+...++|=-.++..-++.    ..+.+...++   ...++.+....   ...+.+++++++|.+.
T Consensus        24 v~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~GftS   99 (284)
T d1gvfa_          24 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS   99 (284)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCE
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhC----CHHHHHHHHHHHHHhcCCeEEeeeccccchHHHHHHHhcCCCe
Confidence            578889899999999999887643332211111    1233333333   22345544433   4688999999999998


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--------~r~~~~~l~~~~~~l~~~  289 (426)
                      |.+=.|  .        .+.+|+++..++++++|+..|+.|++-+-..-|.++.        ..++|+...++++   +.
T Consensus       100 VMiD~S--~--------lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~---~T  166 (284)
T d1gvfa_         100 AMIDGS--H--------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT  166 (284)
T ss_dssp             EEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHH---HH
T ss_pred             EEEECC--C--------CCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHH---Hh
Confidence            887433  2        3578999999999999999999999888765443331        2478888887776   57


Q ss_pred             CCCEEEEc--CCCCCC--CHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          290 GCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       290 Gad~I~l~--DT~G~~--~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |+|.+.++  -+=|.-  .|.==.++++.+++.++. ||.+|  -.-|..--....|+..|+.-|
T Consensus       167 gvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~v-PLVlH--GgSG~~~e~i~~ai~~Gi~Ki  228 (284)
T d1gvfa_         167 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDV-PLVLH--GASDVPDEFVRRTIELGVTKV  228 (284)
T ss_dssp             CCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCS-CEEEC--CCTTCCHHHHHHHHHTTEEEE
T ss_pred             CCCEEeeecCceeeccCCCCccccchhhhhhccccC-CeEee--CCCCCCHHHHHHHHHcCeEEE
Confidence            99976554  222221  222223567888888774 78775  466888889999999998755

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=96.50  E-value=0.28  Score=44.33  Aligned_cols=201  Identities=13%  Similarity=0.049  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh----cCCCcEEEEeCCh-h-------------hH
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLTPNL-K-------------GF  207 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~~~~-~-------------di  207 (426)
                      +.++.++-+..+...|.|.||+=.-.-    ....+.+++.+.++.    ..+..+..-+|.. +             =+
T Consensus        26 ~~~~~~~~~~~~~~~~aD~vE~RlD~l----~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  101 (252)
T d1gqna_          26 DINSVKAEALAYREATFDILEWRVDHF----MDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLN  101 (252)
T ss_dssp             SHHHHHHHHHHHTTSCCSEEEEEGGGC----SCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEEEccc----cccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHH
Confidence            456666677777888999999975321    112344555554443    2345555555532 1             14


Q ss_pred             HHHHHcC-CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          208 EAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       208 ~~a~~~G-v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      +.+++.| ++.|-|-....+               +.+.+.++.+++.|.++.+  ++-.   .....+.+.+.+..+.+
T Consensus       102 ~~~~~~~~~d~iDiEl~~~~---------------~~~~~li~~a~~~~~~vI~--S~Hd---f~~TP~~~~l~~~~~~m  161 (252)
T d1gqna_         102 RAAIDSGLVDMIDLELFTGD---------------ADVKATVDYAHAHNVYVVM--SNHD---FHQTPSAEEMVSRLRKM  161 (252)
T ss_dssp             HHHHHHSCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEEE--EEEE---SSCCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCceEeccccccH---------------HHHHHHHHHhhcCCCeEEE--EecC---CCCCCCHHHHHHHHHHH
Confidence            6677788 688988755433               2245677788899988764  3321   12334568999999999


Q ss_pred             HhCCCCEEEEcCCCCCCCHHHHHHHHHHH---HHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          287 HDMGCFEISLGDTIGVGTPGTVVPMLEAV---MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l---~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      .+.|||.+-|+=+  .-.+.++..++...   +...+..|+-.-+=-.+  |...=+.+-..|....-+++.. .-    
T Consensus       162 ~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~--G~~SRi~~~~~GS~~tya~~~~-~s----  232 (252)
T d1gqna_         162 QALGADIPKIAVM--PQSKHDVLTLLTATLEMQQHYADRPVITMSMAKE--GVISRLAGEVFGSAATFGAVKQ-AS----  232 (252)
T ss_dssp             HHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTT--THHHHHCHHHHTCCEEECBSSS-CC----
T ss_pred             HHhCCCeEEEEec--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--chhHHHHHHHhCCceEeccCCC-CC----
Confidence            9999999999866  45678887777654   34444444444333333  3455566667799988888843 22    


Q ss_pred             CCCCCcccHHHHHHHHHh
Q 014369          364 KGASGNVATEDVVYMLSG  381 (426)
Q Consensus       364 ~graGNa~lEevv~~L~~  381 (426)
                        ..|+.+++++...|+.
T Consensus       233 --APGQ~~~~~l~~~l~~  248 (252)
T d1gqna_         233 --APGQIAVNDLRSVLMI  248 (252)
T ss_dssp             --STTCCBHHHHHHHHHH
T ss_pred             --CCCCCCHHHHHHHHHH
Confidence              5679999998887764

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.026  Score=50.57  Aligned_cols=150  Identities=21%  Similarity=0.203  Sum_probs=102.6

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEe-CChhhHHHHHHcCCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLT-PNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      +.++-++++++|.+.|++.||+++- +|       ...+.++.++ ..|++.+.+-+ -+.++++.+.++|++.+.-. .
T Consensus        24 ~~~~~~~~~~al~~~Gi~~iEitl~-~~-------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP-~   94 (212)
T d1vhca_          24 NADDILPLADTLAKNGLSVAEITFR-SE-------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP-G   94 (212)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEETT-ST-------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS-S
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC-C
Confidence            5677799999999999999999973 22       2345555554 56787776654 68899999999999965432 1


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIG  301 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--DT~G  301 (426)
                      .+                   .+++++|+++++....           +-.+|.++..    +.++|++.+-+=  +..|
T Consensus        95 ~~-------------------~~v~~~a~~~~i~~iP-----------Gv~TpsEi~~----A~~~G~~~vK~FPA~~~g  140 (212)
T d1vhca_          95 LN-------------------PKIVKLCQDLNFPITP-----------GVNNPMAIEI----ALEMGISAVKFFPAEASG  140 (212)
T ss_dssp             CC-------------------HHHHHHHHHTTCCEEC-----------EECSHHHHHH----HHHTTCCEEEETTTTTTT
T ss_pred             CC-------------------HHHHHHHHhcCCCccC-----------CcCCHHHHHH----HHHCCCCEEEEccccccc
Confidence            11                   3788899999998652           2245666444    557999988762  2222


Q ss_pred             CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCC
Q 014369          302 VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       302 ~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                            =..+++.++.-+|+.++-    -+=|....|.-.=+.+|+-
T Consensus       141 ------G~~~lkal~~p~p~~~~~----ptGGV~~~N~~~yl~~g~v  177 (212)
T d1vhca_         141 ------GVKMIKALLGPYAQLQIM----PTGGIGLHNIRDYLAIPNI  177 (212)
T ss_dssp             ------HHHHHHHHHTTTTTCEEE----EBSSCCTTTHHHHHTSTTB
T ss_pred             ------hHHHHHHHhccccCCeEE----ecCCCCHHHHHHHHhCCCE
Confidence                  135688888878865443    3345556676666666753

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.13  Score=45.75  Aligned_cols=179  Identities=18%  Similarity=0.120  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CC--------hhhHHHHHHc
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN--------LKGFEAAIAA  213 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~--------~~di~~a~~~  213 (426)
                      ..+.++..++++...+.|+..+-+    .|.++|      ...+.++ -.++++.+.+  |.        ...++.|++.
T Consensus        14 ~~T~~~i~~lc~~A~~~~~~aVcV----~P~~v~------~a~~~l~-~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~   82 (211)
T d1ub3a_          14 TATLEEVAKAAEEALEYGFYGLCI----PPSYVA------WVRARYP-HAPFRLVTVVGFPLGYQEKEVKALEAALACAR   82 (211)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEC----CGGGHH------HHHHHCT-TCSSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEE----CHHHHH------HHHHHcc-CCCCceEEEEecccccCcHHHHHHHHHHHHHc
Confidence            568889899999999989876554    333332      2222332 1346666655  31        2467889999


Q ss_pred             CCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 014369          214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE  293 (426)
Q Consensus       214 Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~  293 (426)
                      |+++|-+.+..+-.     ..-..+...+.+..+++.+.+.-++|.      +   ..+..+.+.+.++++.+.++|+|-
T Consensus        83 GA~EiD~V~n~~~~-----~~g~~~~v~~ei~~v~~~~~~~~lKVI------l---Et~~L~~~ei~~a~~~a~~aGadf  148 (211)
T d1ub3a_          83 GADEVDMVLHLGRA-----KAGDLDYLEAEVRAVREAVPQAVLKVI------L---ETGYFSPEEIARLAEAAIRGGADF  148 (211)
T ss_dssp             TCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHSTTSEEEEE------C---CGGGSCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCeEEEeeccchh-----hcCCHHHHHHHHHHHHHhccCCceEEE------e---ccccCCHHHHHHHHHHHHHhccce
Confidence            99999999875432     122456666667777776654333332      1   134567899999999999999996


Q ss_pred             EEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 014369          294 ISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  353 (426)
Q Consensus       294 I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~S  353 (426)
                      |--.--.  +..+|++++-|.+.+..+     +++..---- --...+++-+++|+++|=+|
T Consensus       149 iKTSTG~~~~gat~e~v~~m~~~~~~~-----~~iKasGGI-rt~~~a~~~l~aGa~riGtS  204 (211)
T d1ub3a_         149 LKTSTGFGPRGASLEDVALLVRVAQGR-----AQVKAAGGI-RDRETALRMLKAGASRLGTS  204 (211)
T ss_dssp             EECCCSSSSCCCCHHHHHHHHHHHTTS-----SEEEEESSC-CSHHHHHHHHHTTCSEEEET
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHhCCC-----ceEECcCCC-CCHHHHHHHHHHhhhHhccC
Confidence            6655432  236899888777666443     344332100 12345567789999998665

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.31  Score=44.33  Aligned_cols=186  Identities=13%  Similarity=0.074  Sum_probs=118.2

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--C----C
Q 014369          130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P----N  203 (426)
Q Consensus       130 ~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----~  203 (426)
                      +|-||=      +...+.++..++++.-.+.|+..|-+-    |.++      +.+.+.++ -.++++.+.+  |    .
T Consensus        39 ID~TlL------~p~~t~e~i~~lc~~A~~~~~aaVcV~----P~~v------~~a~~~L~-gs~v~v~tVigFP~G~~~  101 (251)
T d1o0ya_          39 IEHTNL------KPFATPDDIKKLCLEARENRFHGVCVN----PCYV------KLAREELE-GTDVKVVTVVGFPLGANE  101 (251)
T ss_dssp             EEEEEC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGH------HHHHHHHT-TSCCEEEEEESTTTCCSC
T ss_pred             ccccCC------CCCCCHHHHHHHHHHHhhcCceEEEEC----HHHH------HHHHHHhc-CCCceEEeeccCCCCCCc
Confidence            466652      336788999999999999998877663    3232      22333332 2456666655  3    1


Q ss_pred             ----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHH
Q 014369          204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  279 (426)
Q Consensus       204 ----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l  279 (426)
                          ...++.|++.|+++|-+.+..+..     .....+...+.+..+++.++  |..+.+  ..     .....+.+.+
T Consensus       102 ~~~K~~Ea~~Ai~~GAdEID~Vin~~~l-----~~g~~~~v~~ei~~v~~~~~--~~~lKV--Il-----Et~~L~~~e~  167 (251)
T d1o0ya_         102 TRTKAHEAIFAVESGADEIDMVINVGML-----KAKEWEYVYEDIRSVVESVK--GKVVKV--II-----ETCYLDTEEK  167 (251)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEEE--EC-----CGGGCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCceEEEEeccchh-----hcCCHHHHHHHHHHHHHHhc--ccceee--ee-----cccccCcHHH
Confidence                246788999999999999875443     22345667777777777764  444442  21     1345677888


Q ss_pred             HHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          280 AYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      ...++.+.++|+|-|--.--.  |.++|+++.-+-+.+..     ++++..=--- --..-++.-+++|+++|=+
T Consensus       168 ~~a~~ia~~aGadfvKTSTGf~~~gat~e~V~~m~~~~~~-----~~giKasGGI-rt~~~a~~~i~aGa~riGt  236 (251)
T d1o0ya_         168 IAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVGD-----EMGVKASGGI-RTFEDAVKMIMYGADRIGT  236 (251)
T ss_dssp             HHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHCT-----TSEEEEESSC-CSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhCcceeeccCCCCCCCcCHHHHHHHHHHhCC-----CceEeccCCc-CCHHHHHHHHHHhhHHhCC
Confidence            899999999999977665543  45688888765544433     2444332110 1135567778999998743

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.96  E-value=0.021  Score=52.86  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHH
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM  186 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~  186 (426)
                      -+.+.-+++++.|.+.|+|.||+|+|-+.+    ++|-+-+.
T Consensus        28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP----~aDGpvIq   65 (267)
T d1qopa_          28 PGIEQSLKIIDTLIDAGADALELGVPFSDP----LADGPTIQ   65 (267)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSEEEECCCSCC----TTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCcc----cccchHHH
Confidence            368888999999999999999999876532    35655433

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.63  E-value=0.38  Score=43.21  Aligned_cols=185  Identities=15%  Similarity=0.183  Sum_probs=118.8

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe--CC--
Q 014369          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN--  203 (426)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~~--  203 (426)
                      .++|-|+=+      ...+.++..++++.-.+.|+..+-+-    |.++      ..+.+.++. .++++.+.+  |.  
T Consensus        22 ~~ID~TlL~------~~~T~~~i~~lc~~A~~~~~~avcV~----p~~v------~~a~~~l~~-s~v~v~tVigFP~G~   84 (234)
T d1n7ka_          22 SRIDSTLLS------PRATEEDVRNLVREASDYGFRCAVLT----PVYT------VKISGLAEK-LGVKLCSVIGFPLGQ   84 (234)
T ss_dssp             TTEEEECCC------TTCCHHHHHHHHHHHHHHTCSEEEEC----HHHH------HHHHHHHHH-HTCCEEEEESTTTCC
T ss_pred             HHhhhcCCC------CCCCHHHHHHHHHHHHHhCCeEEEEC----cHhH------HHHHHHhhc-CCCceEEEEecCCCC
Confidence            457777643      35688888889998888888766553    2222      122233332 357777665  31  


Q ss_pred             ------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHH
Q 014369          204 ------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  277 (426)
Q Consensus       204 ------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~  277 (426)
                            ...++.|++.|+++|-+.+..+-         -.+...+.+.+.++.+++.|..+-+-+.       ....+++
T Consensus        85 ~~~~~k~~E~~~Ai~~GAdEID~Vin~~~---------~~~~~~~ev~~~~~~~~~~g~~lKVIlE-------t~~L~~~  148 (234)
T d1n7ka_          85 APLEVKLVEAQTVLEAGATELDVVPHLSL---------GPEAVYREVSGIVKLAKSYGAVVKVILE-------APLWDDK  148 (234)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEECCCGGG---------CHHHHHHHHHHHHHHHHHTTCEEEEECC-------GGGSCHH
T ss_pred             CcHHHHHHHHHHHHHcCCCeEEEEechhh---------hhhhhHHHHHHHHHHHhccCceEEEEEe-------ccccchH
Confidence                  24678899999999999865432         2345566778888888888876653222       2356789


Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCC----CCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  352 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~----~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~  352 (426)
                      .+..+++.+.++|+|-|-  =+.|.    ++|.++..+.+..+..    .+++..---- --..-++.-+++||++|=+
T Consensus       149 ~i~~a~~~a~~aGadFVK--TSTG~~~~gat~~~~~~l~~~~~~~----~vgIKasGGI-rt~~~a~~~i~aGa~rIGt  220 (234)
T d1n7ka_         149 TLSLLVDSSRRAGADIVK--TSTGVYTKGGDPVTVFRLASLAKPL----GMGVKASGGI-RSGIDAVLAVGAGADIIGT  220 (234)
T ss_dssp             HHHHHHHHHHHTTCSEEE--SCCSSSCCCCSHHHHHHHHHHHGGG----TCEEEEESSC-CSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHhhhhhee--ecccccCCCCCHHHHHHHHHHhcCC----CCcEEeeCCc-CCHHHHHHHHHccCceeec
Confidence            999999999999999654  44553    5788887776665431    2333332100 0124566778999998744

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=95.41  E-value=0.015  Score=53.98  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCc--cc--cc---------cCHHHHHHHhHh---cCCCcEEEEeC-Ch---
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKW--VP--QL---------ADARDVMEAVRD---LEGARLPVLTP-NL---  204 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~--~p--~~---------~D~~~v~~~i~~---~~~~~l~~l~~-~~---  204 (426)
                      -+.+.-+++++.|++ |++.||+|+|-+.+.  .|  |.         .+.+.+++.++.   ..+..+..|+. |.   
T Consensus        27 P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~  105 (271)
T d1ujpa_          27 PSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLA  105 (271)
T ss_dssp             SCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhh
Confidence            367778899999987 999999999754321  11  10         133444444442   23556666663 31   


Q ss_pred             ----hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       205 ----~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                          +-++.+.++|++.+-+..-.                .+...+..+.++++|+.... +.    .|   .++++.+.
T Consensus       106 ~G~~~F~~~~~~aGvdGliipDLP----------------~ee~~~~~~~~~~~gl~~I~-lv----sP---tT~~eRi~  161 (271)
T d1ujpa_         106 WGPERFFGLFKQAGATGVILPDLP----------------PDEDPGLVRLAQEIGLETVF-LL----AP---TSTDARIA  161 (271)
T ss_dssp             HCHHHHHHHHHHHTCCEEECTTCC----------------GGGCHHHHHHHHHHTCEEEC-EE----CT---TCCHHHHH
T ss_pred             CCchhHhHHHhhcCceeEeccchh----------------hhhHHHHHHHhhccccceee-cc----CC---CcchHHHH
Confidence                23577888999988876321                12224566778889987642 11    23   24666666


Q ss_pred             HHHHHHHhCC-CCEEEEcCCCCC--CCHHHHHHHHHHHHHhc
Q 014369          281 YVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       281 ~~~~~l~~~G-ad~I~l~DT~G~--~~P~~v~~li~~l~~~~  319 (426)
                      .+++..  -| +..|...-++|.  ..|.++.++++.+|+..
T Consensus       162 ~i~~~s--~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t  201 (271)
T d1ujpa_         162 TVVRHA--TGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART  201 (271)
T ss_dssp             HHHTTC--CSCEEEECC------------CCHHHHHHHHTTC
T ss_pred             HHHHhC--cchhhhhcccCccCccccchHHHHHHHHhhhccc
Confidence            665422  13 445566666776  46788999999999864

>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.15  Score=48.91  Aligned_cols=206  Identities=20%  Similarity=0.166  Sum_probs=127.8

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHhCCCCeEEEecCC------C---CCcccccc---CHHHHHHHhH---hcCCCcE
Q 014369          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFV------S---PKWVPQLA---DARDVMEAVR---DLEGARL  197 (426)
Q Consensus       135 RDG~Q~~~~--~f~~~~ki~I~~~L~~~Gv~~IEvG~~~------s---~~~~p~~~---D~~~v~~~i~---~~~~~~l  197 (426)
                      |.+.+..+.  ....++...++++-.+...++|=-.+..      .   ...+++..   ........++   .-.++.+
T Consensus        25 ~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~~~~~~~~~~a~~v~~~a~~~~VPV  104 (358)
T d1dosa_          25 KENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPV  104 (358)
T ss_dssp             HHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEecccHHHHcCccchhhhHHhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            445555433  5788999999999999999987653221      1   11112110   0001111222   1234555


Q ss_pred             EEEeC-C----hhhHHHHHHcC-----------CCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEE
Q 014369          198 PVLTP-N----LKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  261 (426)
Q Consensus       198 ~~l~~-~----~~di~~a~~~G-----------v~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~  261 (426)
                      ....- +    .+.++.++++|           ...|.+=.|  .        .+.+++++..++++++|+..|+.|++-
T Consensus       105 ~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS--~--------l~~eeNi~~Tk~vve~Ah~~gv~VEaE  174 (358)
T d1dosa_         105 ILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLS--E--------ESLQENIEICSKYLERMSKIGMTLEIE  174 (358)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEecCccchhhHHHHHHHHHHHHHHHHHhCCCCCccccCCCC--c--------CCHHHHHHHHHHHHHHHhhhCCeEEEe
Confidence            54442 2    23455555554           777776433  2        467899999999999999999999988


Q ss_pred             EEeeecCCCC----------CCCCHHHHHHHHHHHHh-CCCCEEEEc--CCCCC-------CCHHHHHHHHHHHHHhc--
Q 014369          262 VSCVVGCPVE----------GAIPPSKVAYVAKELHD-MGCFEISLG--DTIGV-------GTPGTVVPMLEAVMAVV--  319 (426)
Q Consensus       262 v~~~fg~pd~----------~r~~~~~l~~~~~~l~~-~Gad~I~l~--DT~G~-------~~P~~v~~li~~l~~~~--  319 (426)
                      |-..-|.++.          -.++|+...+.++.+.+ .|+|.+.++  -.=|.       +.|.-..++.+.+++..  
T Consensus       175 lG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~i~~~~~v  254 (358)
T d1dosa_         175 LGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNL  254 (358)
T ss_dssp             CCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTC
T ss_pred             eeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchhhhcCCCCccCCchhhHHHHHHHHHHhCC
Confidence            8765554431          14789988766655544 688855443  22222       25677788888887764  


Q ss_pred             CCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          320 PVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       320 p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |..++.+=.|--.|..--....|++.|+.-|
T Consensus       255 p~~~~~LVlHGgSGip~e~i~~ai~~GV~Ki  285 (358)
T d1dosa_         255 PHNSLNFVFHGGSGSTAQEIKDSVSYGVVKM  285 (358)
T ss_dssp             CTTCSCEEECSCTTCCHHHHHHHHHTTEEEE
T ss_pred             CCcccceeccCCCCCcHHHHHHHHHcCCeEE
Confidence            4223444456688999999999999998755

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.93  E-value=0.041  Score=49.14  Aligned_cols=185  Identities=10%  Similarity=-0.048  Sum_probs=100.3

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC------------C-hhhHHHHHHcCCCEE
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP------------N-LKGFEAAIAAGAKEV  218 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~------------~-~~di~~a~~~Gv~~V  218 (426)
                      ++++.+.++|++.||+.....    +.-.+.+++.+.++. .++++...++            . .+-++.|.+.|++.|
T Consensus        23 ~~l~~~a~~G~dgIEi~~~~~----~~~~~~~~l~~~~~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v   97 (250)
T d1yx1a1          23 SFLPLLAMAGAQRVELREELF----AGPPDTEALTAAIQL-QGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWL   97 (250)
T ss_dssp             GGHHHHHHHTCSEEEEEGGGC----SSCCCHHHHHHHHHH-TTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHhCCCEEEEecccC----CCcchHHHHHHHHHH-cCCEEEEecccccccCchhhHHHHHHHHHHHHHhCCCEE
Confidence            457888999999999964211    111356666666654 3555543221            1 235677788899999


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD  298 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~D  298 (426)
                      +++......             .+++.++.++|++.|+++.  +...   +...-.+++....+.+.+..-....=...|
T Consensus        98 ~~~~g~~~~-------------~~~l~~l~~~a~~~Gv~l~--iE~h---~~~~~~~~~~~~~~~~~~~~~~p~vg~~~D  159 (250)
T d1yx1a1          98 KVSLGLLPE-------------QPDLAALGRRLARHGLQLL--VEND---QTPQGGRIEVLERFFRLAERQQLDLAMTFD  159 (250)
T ss_dssp             EEEEECCCS-------------SCCHHHHHHHHTTSSCEEE--EECC---SSHHHHCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             EEeecccch-------------hHHHHHHHHHHHHcCCEEE--EEeC---CCcccCCHHHHHHHHHHhhccCCccccccc
Confidence            987653221             1235677888999998765  2210   000011334444444433332333444557


Q ss_pred             CCCCCCH-HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 014369          299 TIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVY  377 (426)
Q Consensus       299 T~G~~~P-~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~  377 (426)
                      +.=...- .+..+.++.+.   |- -..+|++|..+..               ++...-+|        .|..++..++.
T Consensus       160 ~~h~~~~g~dp~~~~~~~~---~~-i~~vHvkD~~~~~---------------~~~~~~~g--------~G~~d~~~~~~  212 (250)
T d1yx1a1         160 IGNWRWQEQAADEAALRLG---RY-VGYVHCKAVIRNR---------------DGKLVAVP--------PSAADLQYWQR  212 (250)
T ss_dssp             TTGGGGGTCCHHHHHHHHG---GG-EEEEEECEEEECT---------------TSCEEEEC--------CCHHHHHHHHH
T ss_pred             hHHHHHcCCcHHHHHHHhc---CC-EEEEEeccccCCC---------------CCceecCC--------CCCCCHHHHHH
Confidence            7543221 11223333333   32 3678888754321               11111233        47788999999


Q ss_pred             HHHhCCCCC
Q 014369          378 MLSGLGVET  386 (426)
Q Consensus       378 ~L~~lG~~~  386 (426)
                      .|+.+|++.
T Consensus       213 ~L~~~~~d~  221 (250)
T d1yx1a1         213 LLQHFPEGV  221 (250)
T ss_dssp             HHTTSCTTC
T ss_pred             HHHhCCCCc
Confidence            999887654

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.87  E-value=0.54  Score=42.87  Aligned_cols=185  Identities=13%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHH---HhHhcC--CCcEEEEeCChhhHHHHHHcCC
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVME---AVRDLE--GARLPVLTPNLKGFEAAIAAGA  215 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~---~i~~~~--~~~l~~l~~~~~di~~a~~~Gv  215 (426)
                      |..++.+..++-++.|.+.|.+.|++|--++ |..-| ....+|..+   .++.+.  ++.+++=++..+=.+.|++.|+
T Consensus        20 g~~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~-is~~eE~~Rl~pvi~~l~~~~~~iSIDT~~~eVa~~al~~Ga   98 (264)
T d1ad1a_          20 GKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEM-ITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGV   98 (264)
T ss_dssp             TTTCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-CCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHHHHTTC
T ss_pred             CcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCc-CCHHHHHHhhhhHhhhhcccCcccchhhhhHHHHHHHHhcCC
Confidence            4457889999999999999999999996443 32211 112223322   223333  3444444567778899999999


Q ss_pred             CEEEEe-ccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCH-----HHHHHHHHHHHhC
Q 014369          216 KEVAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-----SKVAYVAKELHDM  289 (426)
Q Consensus       216 ~~V~i~-~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~-----~~l~~~~~~l~~~  289 (426)
                      +.|.=. -...|                  .++.+.+++++..+.  +|+.-+.|.  ..+.     .++.+..+.+..+
T Consensus        99 ~iINDVs~g~~d------------------~~~~~~va~~~~~~i--lmH~~~~~~--~~~~~~~v~~~~~~~~~~~~~~  156 (264)
T d1ad1a_          99 DIINDQWAGLYD------------------HRMFQVVAKYDAEIV--LMHNGNGNR--DEPVVEEMLTSLLAQAHQAKIA  156 (264)
T ss_dssp             CEEEETTTTSSC------------------THHHHHHHHTTCEEE--EECCCCTTC--CSCHHHHHHHHHHHHHHHHHHT
T ss_pred             cEeecccccccc------------------ccHHHHHhhcCccee--eeeeccccc--cCccchhhhhHHHHHHHHHHhh
Confidence            999843 22222                  145556777887654  454322221  1121     2444455567788


Q ss_pred             CCC--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCceEE--------------EEeCCCcCcHHHHHHHHHHcCCC
Q 014369          290 GCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVEKLA--------------VHLHDTYGQSLPNILISLQMGIS  348 (426)
Q Consensus       290 Gad--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~~i~--------------~H~HNd~GlA~ANaLaAl~aGa~  348 (426)
                      |++  .|.+-=-.|.+ ++++=.++++.+..-    +|.. ++              ...++-..-.+|.+..|+..||+
T Consensus       157 Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~~~g~PiL-iG~SRKsfig~l~g~~~~~~~r~~~t~a~~~~a~~~Ga~  235 (264)
T d1ad1a_         157 GIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVL-LATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVR  235 (264)
T ss_dssp             TCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHHTTCSCBE-ECCTTSHHHHTTSSSCCCGGGGHHHHHHHHHHHHHHTCC
T ss_pred             ccccceEEeccCcCccccchhHHHHHHHHHHhhccCCcee-eeccHHHHHHHHhCCCCChHHhhHHHHHHHHHHHHCCCC
Confidence            874  56665555554 456666676665432    2421 11              11122223334556667788988


Q ss_pred             EE
Q 014369          349 TV  350 (426)
Q Consensus       349 ~V  350 (426)
                      +|
T Consensus       236 ii  237 (264)
T d1ad1a_         236 AV  237 (264)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.79  E-value=0.16  Score=45.10  Aligned_cols=164  Identities=17%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             HHHHHHHhCCCCeEEEe----cCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCC-hhhHHHHHHcCCCEEEEeccC
Q 014369          152 ELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPN-LKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~-~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      +-++.|.+.|++.|-+-    .|+     |.+.=..+.++.++...+..+-+  ++.+ .+-++...++|.+.|.+..-.
T Consensus        18 ~ei~~l~~~~~d~iHiDimDg~Fv-----pn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~   92 (220)
T d1h1ya_          18 AEADRMVRLGADWLHMDIMDGHFV-----PNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV   92 (220)
T ss_dssp             HHHHHHHHTTCSEEEEEEEBSSSS-----SCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred             HHHHHHHHcCCCEEEEeeecCccc-----cccccCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecccc
Confidence            34567788999977764    444     33322345666677655554443  4544 467888899999999987643


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEc----CC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLG----DT  299 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~G-ad~I~l~----DT  299 (426)
                      ..               +...++++++|+.|.++...+.     |.   ++++.+..+.   ...+ +|.|-+.    .-
T Consensus        93 ~~---------------~~~~~~i~~i~~~g~~~Glal~-----p~---t~~~~~~~~l---~~~~~~d~vlim~v~PG~  146 (220)
T d1h1ya_          93 SR---------------DNWQELIQSIKAKGMRPGVSLR-----PG---TPVEEVFPLV---EAENPVELVLVMTVEPGF  146 (220)
T ss_dssp             CT---------------TTHHHHHHHHHHTTCEEEEEEC-----TT---SCGGGGHHHH---HSSSCCSEEEEESSCTTC
T ss_pred             cc---------------hhHHHHHHHHHHcCCCcceeec-----cc---cchhHHHHHH---hcccccceEEEEecCCCC
Confidence            22               1134677788999998875442     22   3455554443   2333 5655443    55


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|...-..+.+-|+.+++..|...|.+    |=|.-.-|+-...++||+.+
T Consensus       147 ~GQ~f~~~~l~kI~~l~~~~~~~~I~V----DGGIn~~~i~~l~~aGad~~  193 (220)
T d1h1ya_         147 GGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCI  193 (220)
T ss_dssp             SSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEE
T ss_pred             cccccchhhhHHHHHHHhcCCCceEEE----EecCCHHHHHHHHHCCCCEE
Confidence            566665677788899999888777777    77888889999999999976

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.18  E-value=0.85  Score=41.71  Aligned_cols=178  Identities=14%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-CCHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAK  284 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-~~~~~l~~~~~  284 (426)
                      +++.+.+.|.+-|-+.+...+       .-+.+..++.++++.+.|++.|+++.+-+. ..+.+.... ..++.+...++
T Consensus       111 sv~~a~~~GadaVk~lv~~~~-------d~~~e~~~~~~~~l~~~c~~~glp~llE~l-~~~~~~~~~~~~~~~i~~a~r  182 (291)
T d1to3a_         111 NAQAVKRDGAKALKLLVLWRS-------DEDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAAK  182 (291)
T ss_dssp             CHHHHHHTTCCEEEEEEEECT-------TSCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHHH
T ss_pred             CHHHHHhccCceEEEEEeeCC-------cccHHHHHHHHHHHHHHHHHcCCcceEEEE-ecCCCcccccchHHHHHHHHH
Confidence            578999999987766543211       112345677788999999999998764322 122222222 34777899999


Q ss_pred             HHHhCCCCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 014369          285 ELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  363 (426)
Q Consensus       285 ~l~~~Gad~I~l~DT~-G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  363 (426)
                      .+.++|+|.+-+.=+. ......+....+..+....+...|-+=.--+.--=....-.|+++||..|-+.=+=...    
T Consensus       183 ~~~e~GaDi~K~~~p~~~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~----  258 (291)
T d1to3a_         183 ELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS----  258 (291)
T ss_dssp             HHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG----
T ss_pred             HHHhcCCcEEEEecCCCchhhhHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhC----
Confidence            9999999987776432 22334444454555555554311222122222222333445788998766431000000    


Q ss_pred             CCCCCcccHHHHHHHHHhCCCCCCcChhhHHHHHHHHHHHhCC
Q 014369          364 KGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR  406 (426)
Q Consensus       364 ~graGNa~lEevv~~L~~lG~~~~iDl~~L~~la~~v~~~~g~  406 (426)
                        ..+.+..+++   |+..+      .+.|.++.+.+.+.+++
T Consensus       259 --~~~~~~~~~~---l~~~~------~~~l~~l~~i~~~~~~~  290 (291)
T d1to3a_         259 --VIGLPDTELM---LRDVS------APKLQRLGEIVDEMMGK  290 (291)
T ss_dssp             --GTTCSCHHHH---HHHTH------HHHHHHHHHHHHHHHHT
T ss_pred             --cccCccHHHH---HHHHH------HHHHHHHHHHHHHHhcc
Confidence              1233445543   44332      34677788888777654

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.05  E-value=0.032  Score=50.10  Aligned_cols=198  Identities=15%  Similarity=0.102  Sum_probs=99.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeC--C---------------hhh
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP--N---------------LKG  206 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--~---------------~~d  206 (426)
                      .++.++.+   +...++|++.||+...-..+..+.-.+.+++.+.++. .++++.++..  +               .+-
T Consensus        14 ~~~lee~l---~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (275)
T d2g0wa1          14 EVSFPKRV---KVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-HNMKVTEVEYITQWGTAEDRTAEQQKKEQTT   89 (275)
T ss_dssp             TSCHHHHH---HHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-TTCEEEEEECBCCCSSTTTCCHHHHHHHHHH
T ss_pred             CCCHHHHH---HHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHH-cCCceEEEeeccccCCCchhHHHHHHHHHHH
Confidence            35776655   5567899999999632100000111345555555553 4566655542  0               123


Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++.|...|++.|.+.....         ...+...+.+.++.+++++.|+.+.    ..   +...-.+++.+.++.+.+
T Consensus        90 i~~A~~lG~~~v~~~~~~~---------~~~~~~~~~l~~l~~~a~~~gi~le----~~---~~~~~~t~~~~~~l~~~v  153 (275)
T d2g0wa1          90 FHMARLFGVKHINCGLLEK---------IPEEQIIVALGELCDRAEELIIGLE----FM---PYSGVADLQAAWRVAEAC  153 (275)
T ss_dssp             HHHHHHHTCCEEEECCCSC---------CCHHHHHHHHHHHHHHHTTSEEEEE----CC---TTSSSCSHHHHHHHHHHH
T ss_pred             HHHHHHhCCceEecCCCCc---------hHHHHHHHHHHHHHHHHHhcCeeEe----ee---ccCCCCCHHHHHHHHHHh
Confidence            4556667888777654321         2345666777777777777775443    11   111223556666655544


Q ss_pred             HhCCCCEEEEcCCCC----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 014369          287 HDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  362 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  362 (426)
                      ..  ...-.+-|+.=    -..|.       .+.+.+++--..+|.+|...........--..+              -.
T Consensus       154 ~~--~~~g~~~D~~h~~~~~~~~~-------~~~~~~~~ri~~vHikD~~~~~~~~~~~~~~~~--------------~~  210 (275)
T d2g0wa1         154 GR--DNAQLICDTWHWARANQTAE-------SIKNVPADRIVSIQLCDVHETPYKELREESLHD--------------RL  210 (275)
T ss_dssp             TC--TTEEEEEEHHHHHHTTCCGG-------GGTTCCGGGEEEEEECBCCSSCCSSHHHHHHHB--------------CB
T ss_pred             cc--ccccccccchHHHhcCCCHH-------HHHHhcccceeEEEEEeccCCcccccccccccc--------------cc
Confidence            21  12222223211    11121       122223322467788775543211111100000              01


Q ss_pred             CCCCCCcccHHHHHHHHHhCCCC
Q 014369          363 AKGASGNVATEDVVYMLSGLGVE  385 (426)
Q Consensus       363 a~graGNa~lEevv~~L~~lG~~  385 (426)
                      .+| .|..+...++.+|+..|++
T Consensus       211 ~pG-~G~id~~~i~~~L~~~gy~  232 (275)
T d2g0wa1         211 APG-EGYGDTVGFAKILKEHGVN  232 (275)
T ss_dssp             CTT-SSSSCHHHHHHHHHHHTCC
T ss_pred             CCC-CCCcCHHHHHHHHHHcCCC
Confidence            123 5889999999999987765

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=93.94  E-value=0.14  Score=45.69  Aligned_cols=204  Identities=13%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHhHhcCCCcEEEEeC-------Ch-----------h
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVLTP-------NL-----------K  205 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-------~~-----------~  205 (426)
                      ++.++.   ++...++|++.||+..... +.. ..-.+.+++.+.+.. .++++.++..       ..           +
T Consensus        14 ~~l~~~---l~~a~~~Gf~~IEl~~~~~~~~~-~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (278)
T d1i60a_          14 SNLKLD---LELCEKHGYDYIEIRTMDKLPEY-LKDHSLDDLAEYFQT-HHIKPLALNALVFFNNRDEKGHNEIITEFKG   88 (278)
T ss_dssp             CCHHHH---HHHHHHTTCSEEEEETTTHHHHH-TTSSCHHHHHHHHHT-SSCEEEEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHCcCEEEeCCccccccc-cCcccHHHHHHHHHH-cCCcEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            344444   4566799999999964210 100 011234555544442 3555554431       11           1


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  281 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s----~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~  281 (426)
                      -++.|.+.|++.|.+......      ...+    .+..++.+.++.++|++.|+.+.  +.. .+-+...-.+++.+.+
T Consensus        89 ~i~~a~~lG~~~i~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~-~~~~~~~~~~~~~~~~  159 (278)
T d1i60a_          89 MMETCKTLGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEF-VGHPQCTVNTFEQAYE  159 (278)
T ss_dssp             HHHHHHHHTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EEC-CCCTTBSSCSHHHHHH
T ss_pred             HHHHHHHcCCCccccccccCC------CCCCHHHHHHHHHHHHHHHHHHHHHhCCeee--eee-ccccccccCCHHHHHH
Confidence            245666779888877643211      1222    23456667777888899997654  221 1112222235555555


Q ss_pred             HHHHHHhCCCCEEE-EcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCC
Q 014369          282 VAKELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGC  360 (426)
Q Consensus       282 ~~~~l~~~Gad~I~-l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGec  360 (426)
                      +++   +.+-+.+. .-||. .+.  ....-+..+.+....-...+|++|..+...         | ...+..-      
T Consensus       160 ll~---~v~~~~vg~~~D~~-h~~--~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~---------~-~~~~~~~------  217 (278)
T d1i60a_         160 IVN---TVNRDNVGLVLDSF-HFH--AMGSNIESLKQADGKKIFIYHIDDTEDFPI---------G-FLTDEDR------  217 (278)
T ss_dssp             HHH---HHCCTTEEEEEEHH-HHH--HTTCCHHHHHTSCGGGEEEEEECEECCCCT---------T-TCCGGGE------
T ss_pred             HHH---Hhhcccccccccch-hhh--cCCCCHHHHHHhccccceEEEEeecccccc---------c-ccccccc------
Confidence            554   44333222 22432 110  000112222232322235678877544321         0 0000000      


Q ss_pred             CCCCCCCCcccHHHHHHHHHhCCCCC
Q 014369          361 PYAKGASGNVATEDVVYMLSGLGVET  386 (426)
Q Consensus       361 P~a~graGNa~lEevv~~L~~lG~~~  386 (426)
                       ..|| .|+.+..+++..|+..|++-
T Consensus       218 -~~pG-~G~id~~~~~~~l~~~gy~G  241 (278)
T d1i60a_         218 -VWPG-QGAIDLDAHLSALKEIGFSD  241 (278)
T ss_dssp             -ESTT-SSSSCHHHHHHHHHHTTCCS
T ss_pred             -cCCC-CcccCHHHHHHHHHHHCCCe
Confidence             1123 58899999999999988763

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.69  E-value=0.012  Score=52.70  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=95.2

Q ss_pred             HHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEEE--EeCC-hhhHHHHHHcCCCEEEEeccC
Q 014369          152 ELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPN-LKGFEAAIAAGAKEVAIFASA  224 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~-~~di~~a~~~Gv~~V~i~~~~  224 (426)
                      +-++.|.+.|++.|-+    |.|+     |.+.-..+.++.+++.++..+-+  ++.+ .+-++...++|++.|.+..-.
T Consensus        18 ~~i~~~~~~g~d~iHiDimDg~Fv-----pn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~   92 (217)
T d2flia1          18 SELARIEETDAEYVHIDIMDGQFV-----PNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES   92 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEEBSSSS-----SCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred             HHHHHHHHcCCCEEEEEcccCcCC-----CccccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEecccc
Confidence            4567888999998777    4554     33322234566677666655444  5544 567899999999988886532


Q ss_pred             ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEc---CCC
Q 014369          225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLG---DTI  300 (426)
Q Consensus       225 Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I-~l~---DT~  300 (426)
                                      .+...+.+++++++|.++...+.     |.   ++++.+..+..     -+|.| .++   ...
T Consensus        93 ----------------~~~~~~~i~~i~~~g~~~Gial~-----p~---T~~~~~~~~l~-----~id~vliM~V~pG~~  143 (217)
T d2flia1          93 ----------------TRHIHGALQKIKAAGMKAGVVIN-----PG---TPATALEPLLD-----LVDQVLIMTVNPGFG  143 (217)
T ss_dssp             ----------------CSCHHHHHHHHHHTTSEEEEEEC-----TT---SCGGGGGGGTT-----TCSEEEEESSCTTCS
T ss_pred             ----------------ccCHHHHHHHHHhcCCeEEEEec-----CC---cchhHHHhHHh-----hcCEEEEEEEcCccc
Confidence                            22245677889999998875443     33   34455444332     23422 222   233


Q ss_pred             CCCCHHHHHHHHHHHH----HhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          301 GVGTPGTVVPMLEAVM----AVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       301 G~~~P~~v~~li~~l~----~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      |...-..+.+.++.++    ++.+...|.+=+    |.-.-|+-...++||+.+
T Consensus       144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDG----GIn~~~i~~l~~aGad~~  193 (217)
T d2flia1         144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDG----GVDNKTIRACYEAGANVF  193 (217)
T ss_dssp             SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEES----SCCTTTHHHHHHHTCCEE
T ss_pred             ccccchhhHHHHHHHHHHHHhcCCCeEEEEeC----CCCHHHHHHHHHCCCCEE
Confidence            3333333333344444    444555566644    444557888889999977

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.61  E-value=0.73  Score=42.21  Aligned_cols=211  Identities=14%  Similarity=0.130  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCC-CCc----ccc-----------------------c--cCHHHHHHHhH----hcCCC
Q 014369          150 KVELIRRLVSSGLPVVEATSFVS-PKW----VPQ-----------------------L--ADARDVMEAVR----DLEGA  195 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s-~~~----~p~-----------------------~--~D~~~v~~~i~----~~~~~  195 (426)
                      -.++.+.|.++|+-.+++++... +..    -|+                       +  ...+..++.++    ..+..
T Consensus        24 ~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~  103 (312)
T d1gtea2          24 SSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDN  103 (312)
T ss_dssp             SHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTS
T ss_pred             CHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccccchhhhhhhhcccccccccc
Confidence            35678888999999999885321 000    010                       0  11233344443    23444


Q ss_pred             cEEEEe---CChhh----HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeec
Q 014369          196 RLPVLT---PNLKG----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVG  267 (426)
Q Consensus       196 ~l~~l~---~~~~d----i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg  267 (426)
                      .+.+..   .+.++    .+.+.+.|+|.+.+-++.-.......++.......+.+.++++.+|+. .+++.+-+.    
T Consensus       104 ~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~----  179 (312)
T d1gtea2         104 IVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT----  179 (312)
T ss_dssp             EEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC----
T ss_pred             ccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeeccc----
Confidence            433322   24444    234456799977776543221111122211111123344555555554 455554342    


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----------------------------CCHHHHHHHHHHHHHhc
Q 014369          268 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV----------------------------GTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       268 ~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~----------------------------~~P~~v~~li~~l~~~~  319 (426)
                       |+.  .   ...++++.+.++|++-|.+.+|.+.                            .......+.++.+++..
T Consensus       180 -~~~--~---~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~  253 (312)
T d1gtea2         180 -PNV--T---DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL  253 (312)
T ss_dssp             -SCS--S---CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS
T ss_pred             -ccc--h---hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHc
Confidence             222  1   2346778888999999999988531                            11233456788888877


Q ss_pred             CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          320 PVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       320 p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      +.++|..=+==..   -.-++..+.+||+.|...-.=+-        .|.--+++++..|+.
T Consensus       254 ~~ipIi~~GGI~~---~~d~~~~l~aGA~~Vqv~ta~~~--------~G~~~i~~i~~~L~~  304 (312)
T d1gtea2         254 PGFPILATGGIDS---AESGLQFLHSGASVLQVCSAVQN--------QDFTVIQDYCTGLKA  304 (312)
T ss_dssp             TTCCEEEESSCCS---HHHHHHHHHTTCSEEEESHHHHT--------SCTTHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCC---HHHHHHHHHcCCCeeEECHhhhc--------cChHHHHHHHHHHHH
Confidence            6544433221111   14567788899998876543332        355556666666654

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.49  E-value=0.84  Score=42.65  Aligned_cols=137  Identities=18%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             HHHHHcCCCEEEEecc--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEEeeecCCCCCCCCH
Q 014369          208 EAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP  276 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~--------~Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~-G~~v~~~v~~~fg~pd~~r~~~  276 (426)
                      ++|.++|.|.|.|...        .|+..  +...+|-+.++=+..+.++++.+|+. +..+.+-++..-  ...+-.+.
T Consensus       150 ~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~--~~~~g~~~  227 (337)
T d1z41a1         150 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASD--YTDKGLDI  227 (337)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCC--CSTTSCCH
T ss_pred             HHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccc--cccCccch
Confidence            4567899999988753        12222  22346778888777778888888775 455554454321  12234688


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCC-----CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          277 SKVAYVAKELHDMGCFEISLGDTIG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       277 ~~l~~~~~~l~~~Gad~I~l~DT~G-----~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      +...++++.+.++|+|.+.+.--.-     ...|.-...+.+.+|+.+.. ++..-+.-+   ....+..+|+.| ||.|
T Consensus       228 ~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~i~---~~~~ae~~l~~g~~D~V  303 (337)
T d1z41a1         228 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADM-ATGAVGMIT---DGSMAEEILQNGRADLI  303 (337)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCC-EEEECSSCC---SHHHHHHHHHTTSCSEE
T ss_pred             hhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCc-eEEEeCCcC---CHHHHHHHHHCCCccee
Confidence            9999999999999999887743221     23445556777888887764 455433211   345566788888 7865

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=93.22  E-value=0.31  Score=43.15  Aligned_cols=109  Identities=19%  Similarity=0.172  Sum_probs=75.6

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCc----eEEEEeCCCcCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE----KLAVHLHDTYGQ  334 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~----~i~~H~HNd~Gl  334 (426)
                      ++.+.|+|.+. .+.+.-..-++.+.+.||++|-+.=-.|.+   .-+.+.+-++.+++..++.    .|+.+..++--.
T Consensus        56 v~~VigFP~G~-~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei  134 (211)
T d1ub3a_          56 LVTVVGFPLGY-QEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEI  134 (211)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHH
T ss_pred             eEEEEeccccc-CcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHH
Confidence            34556788765 445555555778888999999887766664   4567777788888876643    245566655444


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      . .-+..|+++||++|=+|- |.+        .+.+..|++..+.+.
T Consensus       135 ~-~a~~~a~~aGadfiKTST-G~~--------~~gat~e~v~~m~~~  171 (211)
T d1ub3a_         135 A-RLAEAAIRGGADFLKTST-GFG--------PRGASLEDVALLVRV  171 (211)
T ss_dssp             H-HHHHHHHHHTCSEEECCC-SSS--------SCCCCHHHHHHHHHH
T ss_pred             H-HHHHHHHHhccceEEecC-CCC--------CCCCCHHHHHHHHHH
Confidence            4 445688999999998885 444        355788888877764

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=1  Score=39.75  Aligned_cols=203  Identities=15%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             HHHHHHhCCCCeEEEecCCCCC-cc-ccc--cCHHHHHHHhHh--cCCCcEEEEeC---Ch----------------hhH
Q 014369          153 LIRRLVSSGLPVVEATSFVSPK-WV-PQL--ADARDVMEAVRD--LEGARLPVLTP---NL----------------KGF  207 (426)
Q Consensus       153 I~~~L~~~Gv~~IEvG~~~s~~-~~-p~~--~D~~~v~~~i~~--~~~~~l~~l~~---~~----------------~di  207 (426)
                      .++...++|++.||+ |..+|. |. |.+  .+.+++.+.++.  ++...+.+..+   |.                +.+
T Consensus        17 a~~~a~e~G~~~iei-f~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~~~~~~p~~~n~~~~~~~~r~~s~~~~~~~i   95 (285)
T d1qtwa_          17 AAIRAAEIDATAFAL-FTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEM   95 (285)
T ss_dssp             HHHHHHHTTCSEEEC-CSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcceeEecCCcccccccchHHHHHHHHHHHHHHH
Confidence            566678999999999 333443 22 222  123344444442  22223333332   11                124


Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.|.+.|++.+.+....-.      ...+.++.++.+.+.++.+......+.+.+...-..+...-.+++.+.++.+.+.
T Consensus        96 ~~a~~lG~~~vv~h~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~i~le~~~~~~~~~~~~~~~~~~i~~~~~  169 (285)
T d1qtwa_          96 QRCEQLGLSLLNFHPGSHL------MQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVE  169 (285)
T ss_dssp             HHHHHTTCCEEEECCCBCT------TTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHHHCS
T ss_pred             HHHHHcCCCceeeeceecc------CcccHHHHHHHHHHHHHHHHHhccCCeEEEeeccccCCcCcCCHHHHHHHHHHhc
Confidence            5666789988877643211      1235667777777766655444444444344322222222346677666655332


Q ss_pred             hCCCCEEEEc-CCC-------CCCCHHHHHHHHHHHHHhc-CCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          288 DMGCFEISLG-DTI-------GVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       288 ~~Gad~I~l~-DT~-------G~~~P~~v~~li~~l~~~~-p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      .  -..+.++ ||.       ....+....+.+......+ +.--..+|.||..+---        .+.+. +.   .+|
T Consensus       170 ~--~~~vgl~lD~~H~~~~G~d~~~~~~~~~~~~~~~~~~~~~~i~~vH~~D~~~~~g--------~~~d~-H~---~~G  235 (285)
T d1qtwa_         170 D--KSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFG--------SRVDR-HH---SLG  235 (285)
T ss_dssp             C--GGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCTT--------CCCCC-EE---CTT
T ss_pred             c--cccceEecccchHHHcCCCcccHHHHHHHHHHHHHHhhhhhheEEeeccCCCCCC--------CCccc-cc---CCC
Confidence            1  2233332 321       1334555544444444433 33246789988643210        01121 11   244


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHhCCC
Q 014369          359 GCPYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       359 ecP~a~graGNa~lEevv~~L~~lG~  384 (426)
                              .|+.+.+.++..|+..++
T Consensus       236 --------~G~id~~~~~~~L~~~~~  253 (285)
T d1qtwa_         236 --------EGNIGHDAFRWIMQDDRF  253 (285)
T ss_dssp             --------TSSSCSHHHHHHHTCGGG
T ss_pred             --------CCCcCHHHHHHHHhhhCC
Confidence                    589999999999987433

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.96  E-value=1.9  Score=39.29  Aligned_cols=181  Identities=10%  Similarity=0.070  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC-----CCCcc----------------c--cc--cCHHHHHHHhHhcCCCcEEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV-----SPKWV----------------P--QL--ADARDVMEAVRDLEGARLPVL  200 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~-----s~~~~----------------p--~~--~D~~~v~~~i~~~~~~~l~~l  200 (426)
                      +.+.-.++++...++|.+.|=+-.+.     +++..                .  .+  .+..++.+.++. .+..+.+-
T Consensus        29 ~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~-~gi~~~~s  107 (295)
T d1vlia2          29 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCRE-KQVIFLST  107 (295)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHH-TTCEEECB
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhh-cccceeee
Confidence            56777889999999999998876432     11100                0  00  111122222221 23444433


Q ss_pred             eCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHH
Q 014369          201 TPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  280 (426)
Q Consensus       201 ~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~  280 (426)
                      +...+.++.+.+.|++.+-|.-+  +.              .. .++++++.+.+.++.  ++       .+..+.+.+.
T Consensus       108 ~fd~~s~~~l~~l~~~~iKIaS~--d~--------------~n-~~Li~~i~k~~kpvi--is-------tG~~~~~ei~  161 (295)
T d1vlia2         108 VCDEGSADLLQSTSPSAFKIASY--EI--------------NH-LPLLKYVARLNRPMI--FS-------TAGAEISDVH  161 (295)
T ss_dssp             CCSHHHHHHHHTTCCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHH
T ss_pred             cccceeeeeecccCcceeEeccc--cc--------------cc-HHHHHHHHhcCCchh--ee-------chhhhhhhHH
Confidence            44678889998999998888622  21              01 256777888898876  32       2446788888


Q ss_pred             HHHHHHHhCCC-CEEEEcCCCCCCCHHHH--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 014369          281 YVAKELHDMGC-FEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  355 (426)
Q Consensus       281 ~~~~~l~~~Ga-d~I~l~DT~G~~~P~~v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~  355 (426)
                      ++++.+...+. +.+-+-=+..+=+|..=  -..+..+++.++..++++--|-..|..  -+++|+.+||++|  |.|+.
T Consensus       162 ~~~~~~~~~~~~~i~llhc~s~YPt~~~~~nL~~i~~l~k~~~~~~vG~SdHs~~~~~--~~~~A~~~Ga~~IEkH~tl~  239 (295)
T d1vlia2         162 EAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTE--APCAAVRLGAKLIEKHFTID  239 (295)
T ss_dssp             HHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCSSSSH--HHHHHHHTTCSEEEEEBCSC
T ss_pred             HHHhHhhhcccccEEEEeecccccccchhhhhhhhhhhhhhccccceeeecccccccc--chhhhhccCcceeeEEEEec
Confidence            88888887775 45555555555554332  233677888888778899888665554  4667888999988  66665

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.89  E-value=1.2  Score=39.88  Aligned_cols=139  Identities=14%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccc-cCHHHHHHHhHhcCCCcEEEEeC----ChhhHHHHHHcCCCEE
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEV  218 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~----~~~di~~a~~~Gv~~V  218 (426)
                      .++.++..++++.+.++|+..+..+.. .    |-+ .|..+++.............++-    +.+-++...++|++.|
T Consensus        47 ~ls~e~~~~li~~~~~~g~~~v~~~GG-E----p~l~~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i  121 (327)
T d1tv8a_          47 LLTFDEMARIAKVYAELGVKKIRITGG-E----PLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRI  121 (327)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEESS-C----GGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEE
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEeCCC-c----ccccccHHHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEE
Confidence            378999999999999999998887531 1    222 23344444444333344334442    2456778889999999


Q ss_pred             EEeccCCh--HHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          219 AIFASASE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       219 ~i~~~~Sd--~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      .+.+...+  .|.+.. +.  ...++++.+.++.+++.|+.+.+.++..      .....+.+.++.+.+.+.+++...+
T Consensus       122 ~iSldg~~~e~~~~~r-g~--~g~~~~~~~~~~~~~~~g~~~~~~~~v~------~~~n~~~~~~~~~~~~~~~~~~~~~  192 (327)
T d1tv8a_         122 NVSLDAIDDTLFQSIN-NR--NIKATTILEQIDYATSIGLNVKVNVVIQ------KGINDDQIIPMLEYFKDKHIEIRFI  192 (327)
T ss_dssp             EEECCCSSHHHHHHHH-SS--CCCHHHHHHHHHHHHHTTCEEEEEEEEC------TTTTGGGHHHHHHHHHHTTCCEEEE
T ss_pred             eeecccCCHHHhhhhe-ee--ccccchhhhHHHHHHHcCCCcceeEEEe------cCccccccHHHHHHHHhhcccccee
Confidence            99986654  233221 11  1235667788889999999888666532      1123456667777888888874443

>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Bacillus anthracis [TaxId: 1392]

Probab=92.79  E-value=0.61  Score=42.82  Aligned_cols=201  Identities=13%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCcc--ccc--cCHHHHHHHhHhcCCC-cEEEEeC---Ch-----------------h
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWV--PQL--ADARDVMEAVRDLEGA-RLPVLTP---NL-----------------K  205 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~--p~~--~D~~~v~~~i~~~~~~-~l~~l~~---~~-----------------~  205 (426)
                      ...++...+.|.+.+++ |..+|...  +.+  .+.++..+.+++ .+. .+.+.+|   |+                 +
T Consensus        16 ~~a~~~a~~~g~~~~Qi-F~~~p~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~vHapY~iNlas~~~~~~r~~Si~~l~~   93 (297)
T d1xp3a1          16 LAASEEAVSYGATTFMI-YTGAPQNTRRKPIEELNIEAGRKHMEQ-NGIEEIIIHAPYIINVGNTTKPETFQLGVDFLRM   93 (297)
T ss_dssp             HHHHHHHHTTTCSSEEE-CSSCTTCCCCCCGGGGCHHHHHHHHHH-TTCCCEEEECCTTCCTTCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCchhhhcCceEeeccccccHHHHHHHHHHHHH
Confidence            34456667888888888 32333211  112  344444444443 233 3444443   11                 2


Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      +++.|.+.|+..+.|+.+-+      ..+.+.+++++++.+.++.+.+....+.+.+...-+....-..+++.+.++.+.
T Consensus        94 ~l~~a~~lG~a~~vV~HpG~------~~~~~~e~~l~~~~~~l~~i~~~~~~~~i~lE~~a~~~~~~g~~~eel~~ii~~  167 (297)
T d1xp3a1          94 EIERTSALGVAKQIVLHPGA------HVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMAGKGTECGRSFEEIAKIIDG  167 (297)
T ss_dssp             HHHHHHHSSSCCEEEECCEE------CTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCCCCTTEECCSHHHHHHHHHH
T ss_pred             HHHHHHHhccCcEEeeCCcc------cccCCHHHHHHHHHHHHHHHhhhcccceEEEEeccccccccCCCHHHHHHHHHH
Confidence            34566778864333333321      235578899999998888875554444443443222222223567888877765


Q ss_pred             HHhCCCCEEEEc-CC-----CCCCCHHHHHHHHHHHHHhcCCceE-EEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 014369          286 LHDMGCFEISLG-DT-----IGVGTPGTVVPMLEAVMAVVPVEKL-AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  358 (426)
Q Consensus       286 l~~~Gad~I~l~-DT-----~G~~~P~~v~~li~~l~~~~p~~~i-~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  358 (426)
                      +..  .+.+.+| ||     .|+-....+.++++.+.+..+...| .+|+||..+-=        -++.|. |.   -+|
T Consensus       168 ~~~--~~~vgvClDt~H~~aaG~~~~~~~~~~l~~f~~~~G~~~i~~iHlnDs~~~~--------gs~~Dr-H~---~iG  233 (297)
T d1xp3a1         168 VKY--NEKLSVCFDTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQVLHINDSKNVR--------GAGKDR-HE---NIG  233 (297)
T ss_dssp             CTT--GGGEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT--------TCCCCC-EE---CTT
T ss_pred             hcc--ccceeeeccHHHHHHhccChhhHHHHHHHHHHHhhchhheeEEEEecccCcC--------CCCccc-cC---CCC
Confidence            532  2223333 44     4555566777888888877763344 78999864421        012232 22   344


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHh
Q 014369          359 GCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       359 ecP~a~graGNa~lEevv~~L~~  381 (426)
                              .|+...+.+...|+.
T Consensus       234 --------~G~I~~~~l~~ll~~  248 (297)
T d1xp3a1         234 --------FGHIGYKALHHIVHH  248 (297)
T ss_dssp             --------SSSSCHHHHHHHHTC
T ss_pred             --------CCCcCHHHHHHHHhc
Confidence                    478888888888874

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=92.79  E-value=1.3  Score=40.37  Aligned_cols=184  Identities=16%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHh----H---hcCCCcEEEEeCChhhHHHHHHcCC
Q 014369          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----R---DLEGARLPVLTPNLKGFEAAIAAGA  215 (426)
Q Consensus       144 ~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i----~---~~~~~~l~~l~~~~~di~~a~~~Gv  215 (426)
                      .++.+..++-++.|.+.|.+.|++|--++ |..-| . +.++..+.+    +   ...+..+++=+++.+=.+.|+++|+
T Consensus        38 ~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~-i-s~~eE~~rl~p~i~~~~~~~~~~iSIDT~~~~Va~~al~~G~  115 (273)
T d1tx2a_          38 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK-V-SVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGA  115 (273)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCC-C-CHHHHHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEeeceeccccccc-c-CHHHHHHhhchhHHhhhccceEEEehHHhhHHHHHHHHHcCC
Confidence            35778889999999999999999996443 32211 1 233322222    2   1235556555677788899999999


Q ss_pred             CEEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCC---CHHHHHHHHHHHHhCCC
Q 014369          216 KEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI---PPSKVAYVAKELHDMGC  291 (426)
Q Consensus       216 ~~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~---~~~~l~~~~~~l~~~Ga  291 (426)
                      +.|.=.-.. .|                  ..+.+.+++.+..+.  +|+.-+.|.....   -..++.+-.+.+.++|+
T Consensus       116 ~iINDvsg~~~D------------------~~m~~~~~~~~~~~v--lmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI  175 (273)
T d1tx2a_         116 HIINDIWGAKAE------------------PKIAEVAAHYDVPII--LMHNRDNMNYRNLMADMIADLYDSIKIAKDAGV  175 (273)
T ss_dssp             CEEEETTTTSSC------------------THHHHHHHHHTCCEE--EECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEeccccccch------------------hHHHHHHHhhccccc--ccccccccccccccchhhhhHHHHHHHHHHcCC
Confidence            988854332 22                  133445566676655  4543332221110   11355566778888998


Q ss_pred             C--EEEEcCCCCCC-CHHHHHHHHHHHHHh----cCCceEEE------------EeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          292 F--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPVEKLAV------------HLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       292 d--~I~l~DT~G~~-~P~~v~~li~~l~~~----~p~~~i~~------------H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .  .|.+-=-.|.. ++.+-.++++.+..-    +|. -+++            ..++.+.-.+|.+..|+..||++|
T Consensus       176 ~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~~~g~Pi-lvG~SRKsfig~~~~~~~~eRl~~Tla~~~~a~~~Ga~il  252 (273)
T d1tx2a_         176 RDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV-LLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFV  252 (273)
T ss_dssp             CGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB-EEECTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEE
T ss_pred             ChheEecCccCCccchHHHHHHHHhhhcccccCCCcE-EEEehHHHHHHHHhCCCHHHhhHHHHHHHHHHHHCCCCEE
Confidence            5  46555455554 345555666655431    243 1222            244555555667777889999987

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=92.74  E-value=0.31  Score=46.24  Aligned_cols=138  Identities=17%  Similarity=0.077  Sum_probs=83.1

Q ss_pred             HHHHHcCCCEEEEeccCC---hHHH-------hhhcCCCHHHHHHHHHHHHHHHHhc-CC-cEEEEEEeeecCC--CCCC
Q 014369          208 EAAIAAGAKEVAIFASAS---EAFS-------KSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCP--VEGA  273 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~S---d~~~-------~~~~~~s~~e~l~~~~~~v~~Ak~~-G~-~v~~~v~~~fg~p--d~~r  273 (426)
                      ++|.++|.|.|.|...-.   ..|.       .-.+|-|.|+=+..+.++++.+|+. |- .|.+.++..-..+  +.+-
T Consensus       167 ~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg  246 (363)
T d1vyra_         167 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  246 (363)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcc
Confidence            466789999988875321   1121       1225667887666777777777664 32 2433343211111  1234


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 014369          274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  350 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aG-a~~V  350 (426)
                      .+.++..++++.+.+.|+|.|.+..+.-...|.-...+.+.+++.+...-+....+ |    ...+-.+|+.| ||.|
T Consensus       247 ~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~-t----~~~ae~~l~~G~~DlV  319 (363)
T d1vyra_         247 NEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY-T----AEKAEDLIGKGLIDAV  319 (363)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC-C----HHHHHHHHHTTSCSEE
T ss_pred             cchHHHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCC-C----HHHHHHHHHCCCccee
Confidence            56778889999999999998888754322222223345666777776433444433 3    46677889999 7876

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.62  E-value=1.1  Score=41.84  Aligned_cols=94  Identities=21%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEE
Q 014369          246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA  325 (426)
Q Consensus       246 ~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~  325 (426)
                      +.++..++....+.+.+    |      .+++ ..+.++.+.++|++.|.+ | +....+..+.+.++.+++.+|+.++-
T Consensus        77 ~~i~~vk~~~~~v~~~v----g------v~~~-~~e~~~~li~agvd~ivI-d-~A~G~~~~~~~~ik~ik~~~~~~~vi  143 (330)
T d1vrda1          77 RQVSIVKKTRLLVGAAV----G------TSPE-TMERVEKLVKAGVDVIVI-D-TAHGHSRRVIETLEMIKADYPDLPVV  143 (330)
T ss_dssp             HHHHHHHTCCBCCEEEE----C------SSTT-HHHHHHHHHHTTCSEEEE-C-CSCCSSHHHHHHHHHHHHHCTTSCEE
T ss_pred             HHHHHHhhhccEEEEEE----e------cCHH-HHHHHHHHHHCCCCEEEE-e-cCCCCchhHHHHHHHHHHhCCCCCEE
Confidence            34455666665554332    2      1223 235577888999998887 4 55667889999999999999876555


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          326 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       326 ~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      ++-=-++    -.+...+++|||.|=+   |+|.
T Consensus       144 aGnV~t~----~~a~~l~~~GaD~v~V---Gig~  170 (330)
T d1vrda1         144 AGNVATP----EGTEALIKAGADAVKV---GVGP  170 (330)
T ss_dssp             EEEECSH----HHHHHHHHTTCSEEEE---CSSC
T ss_pred             eechhHH----HHHHHHHHcCCCEEee---cccc
Confidence            4432222    2245667899998765   6664

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.57  E-value=0.89  Score=40.02  Aligned_cols=165  Identities=13%  Similarity=0.063  Sum_probs=102.2

Q ss_pred             HHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhc-CCCcEEE--EeCCh-hhHHHHHHcCCCEEEEecc
Q 014369          152 ELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPV--LTPNL-KGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~~~-~di~~a~~~Gv~~V~i~~~  223 (426)
                      +-++.|.+.|++.|-+    |.|+     |.+.=.....+.+++. ++..+-+  ++.+. +-++...++|.+.+++...
T Consensus        19 ~~i~~l~~~~~d~iHiDimDG~Fv-----pn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~~~   93 (221)
T d1tqxa_          19 EETQRMESLGAEWIHLDVMDMHFV-----PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEAL   93 (221)
T ss_dssp             HHHHHHHHTTCSEEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGGGG
T ss_pred             HHHHHHHHcCCCEEEEECccCcCc-----CccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeEEeehh
Confidence            4567788999997666    4444     3332223445566654 5665554  45553 3456666677766655432


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----CC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----DT  299 (426)
                      .              +...+..+.++++|++|.++...+.     |+   ++.+.+..+.   ....+|.|-+.    .-
T Consensus        94 ~--------------~~~~~~~~~i~~i~~~g~~~Gial~-----p~---t~~~~~~~~l---~~~~~d~vlim~V~pG~  148 (221)
T d1tqxa_          94 N--------------EDTERCIQLAKEIRDNNLWCGISIK-----PK---TDVQKLVPIL---DTNLINTVLVMTVEPGF  148 (221)
T ss_dssp             T--------------TCHHHHHHHHHHHHTTTCEEEEEEC-----TT---SCGGGGHHHH---TTTCCSEEEEESSCTTC
T ss_pred             c--------------cccchhhHHHHHHHhcCCeEEEeec-----cc---cccccchhhc---ccccccEEEEEeecccc
Confidence            2              1244556778899999999885553     32   3444444432   12346644332    33


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       300 ~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                      .|...=..+.+-|+.+++..|...|.+    |=|.-.-|+-....+||+.+
T Consensus       149 ~GQ~f~~~~l~KI~~lr~~~~~~~I~V----DGGIn~~~i~~l~~aGad~i  195 (221)
T d1tqxa_         149 GGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHGANII  195 (221)
T ss_dssp             SSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHTCCEE
T ss_pred             cccccCcchhHHHHHHHHhcCCcceEE----EcccCHHhHHHHHHcCCCEE
Confidence            344444567777888999888766665    78999999999999999977

>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Hypothetical protein YgbM (EC1530)
domain: Hypothetical protein YgbM (EC1530)
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.48  Score=40.75  Aligned_cols=192  Identities=10%  Similarity=0.022  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEe-C--C------------------
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-P--N------------------  203 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~--~------------------  203 (426)
                      +|.++.++   ...++|++.||+..+..       .+.+++.+.++. .+.++..+. +  .                  
T Consensus        15 ~pl~e~i~---~a~~~Gf~gIEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (260)
T d1k77a_          15 VPFIERFA---AARKAGFDAVEFLFPYN-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEA   83 (260)
T ss_dssp             SCGGGHHH---HHHHHTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCCCGGGTCSCSTTCTTCHHHH
T ss_pred             CCHHHHHH---HHHHhCCCEEEECCCCC-------CCHHHHHHHHHH-CCCcEEEEecccccccccccccccCHHHHHHH
Confidence            46666554   45667999999854321       345566666653 334433332 0  0                  


Q ss_pred             hh----hHHHHHHcCCCEEEEeccCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC
Q 014369          204 LK----GFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       204 ~~----di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~----~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~  275 (426)
                      ..    .++.+...|+..+.+......      ...+.    +...+.+..+..++.+.|+.....-......+...-.+
T Consensus        84 ~~~~~~~~~~~~~l~~~~v~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~a~~~gi~~~~e~~~~~~~~~~~~~~  157 (260)
T d1k77a_          84 HADIDLALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSS  157 (260)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCS
T ss_pred             HHHHHHHHHHHHhhCCCeeeecCCCCC------CCccHHHHHHHHHHHHHHHhhHHHhcCceeeccccccccccccccCC
Confidence            01    124455678888887654322      12223    34556667778888999976542111000011122235


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 014369          276 PSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  354 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~-DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv  354 (426)
                      ++.+.++++   +.+.+.+.+. ||. .+.... ...+..++...+. -..+|+.|..+.                    
T Consensus       158 ~~~~~~l~~---~v~~~~~~~~~D~~-h~~~~~-~~~~~~~~~~~~~-i~~vH~~D~~~~--------------------  211 (260)
T d1k77a_         158 QYQALAIVE---EVARDNVFIQLDTF-HAQKVD-GNLTHLIRDYAGK-YAHVQIAGLPDR--------------------  211 (260)
T ss_dssp             HHHHHHHHH---HHCCTTEEEEEEHH-HHHHHT-CCHHHHHHHTTTS-EEEEEECCTTTC--------------------
T ss_pred             HHHHHHHHH---HhCCccccccccch-hhhccC-CcHHHHHHHhccc-cceEeecCCCCC--------------------
Confidence            565555554   4454433333 442 222111 1223344443343 367788876542                    


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHhCCCCCC
Q 014369          355 AGLGGCPYAKGASGNVATEDVVYMLSGLGVETN  387 (426)
Q Consensus       355 ~GlGecP~a~graGNa~lEevv~~L~~lG~~~~  387 (426)
                           +  .+| .|..+...++.+|+..|++.-
T Consensus       212 -----~--~pG-~G~id~~~i~~~L~~~GY~G~  236 (260)
T d1k77a_         212 -----H--EPD-DGEINYPWLFRLFDEVGYQGW  236 (260)
T ss_dssp             -----C--CSS-SSSSCHHHHHHHHHHTTCCSC
T ss_pred             -----C--CCC-CcccCHHHHHHHHHHhCCCce
Confidence                 1  123 589999999999999888643

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=91.94  E-value=2  Score=38.55  Aligned_cols=45  Identities=11%  Similarity=0.119  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcC
Q 014369          276 PSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~-DT~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .....++++.+.++|+|.|.+. =..-..+..++.+.++.+.+..|
T Consensus        84 ~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~  129 (292)
T d1xkya1          84 THASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP  129 (292)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCC
Confidence            3444455555555555533331 11122234445555555544443

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.75  E-value=1.3  Score=40.12  Aligned_cols=17  Identities=12%  Similarity=0.067  Sum_probs=8.0

Q ss_pred             CCCHHHHHHHHHHHHhC
Q 014369          273 AIPPSKVAYVAKELHDM  289 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~  289 (426)
                      ..+.+.+.+..+.+.++
T Consensus       115 ~~~~~~l~~~~~~v~~~  131 (296)
T d1xxxa1         115 KPPQRGLQAHFTAVADA  131 (296)
T ss_dssp             CCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            33444555555544443

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=2.3  Score=38.89  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=100.1

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCccccccCHHHHHHHh---Hhc---CCCcEEE
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV---RDL---EGARLPV  199 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~~~v~~~i---~~~---~~~~l~~  199 (426)
                      +=|+-+|+ |-..--|..++.+..++-++.|.+.|.+.|++|--++ |..-| ....+|..+.+   +.+   .+..+++
T Consensus        18 MGIlNvTP-DSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~-vs~eeE~~Rl~pvi~~l~~~~~~~iSI   95 (282)
T d1ajza_          18 MGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-VSVEEELQRVIPVVEAIAQRFEVWISV   95 (282)
T ss_dssp             EEEEECCT-TTSTTTTCSSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCC-CCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             EEEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccccccccC-CcHHHHHHHHHHHHHHHhhcccceEEE
Confidence            34555553 3333323456888889999999999999999996543 32222 11122222222   222   3444555


Q ss_pred             EeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC-----C
Q 014369          200 LTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-----I  274 (426)
Q Consensus       200 l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r-----~  274 (426)
                      =++..+=.+.|+++|++.|.-.-..++           ++.       ++.+.+.+..+.  +|+.-|.|..-.     .
T Consensus        96 DT~~~eVa~~al~~Ga~iINDvsg~~~-----------~~~-------~~~va~~~~~~v--lmh~~g~p~~~~~~~~y~  155 (282)
T d1ajza_          96 DTSKPEVIRESAKVGAHIINDIRSLSE-----------PGA-------LEAAAETGLPVC--LMHMQGNPKTMQEAPKYD  155 (282)
T ss_dssp             ECCCHHHHHHHHHTTCCEECCTTTTCS-----------TTH-------HHHHHHHTCCEE--EECCSSCTTCCSCCCCCS
T ss_pred             EecChHHHHHHHhcCceEEechhhccc-----------chh-------HHHhhccCceEE--EeccCCCccccccCCccc
Confidence            456777788999999998876433222           122       233445565554  555545443211     1


Q ss_pred             C-----HHHHHHHHHHHHhCCC--CEEEEcCCCCCCC-HHHHHHHHHHHHH
Q 014369          275 P-----PSKVAYVAKELHDMGC--FEISLGDTIGVGT-PGTVVPMLEAVMA  317 (426)
Q Consensus       275 ~-----~~~l~~~~~~l~~~Ga--d~I~l~DT~G~~~-P~~v~~li~~l~~  317 (426)
                      +     .+++.+..+.+.++|+  +.|.|==-.|.+. +.+-.++++.+..
T Consensus       156 dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK~~~~n~~ll~~l~~  206 (282)
T d1ajza_         156 DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAE  206 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGG
T ss_pred             chhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcCCChhhhHHHHhhcch
Confidence            2     2567777788889998  5777766777665 6777777766543

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.26  Score=44.57  Aligned_cols=119  Identities=18%  Similarity=0.338  Sum_probs=78.9

Q ss_pred             HHHHHHHhHhc--CCCcEEEEe-CChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcE
Q 014369          182 ARDVMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  258 (426)
Q Consensus       182 ~~~v~~~i~~~--~~~~l~~l~-~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v  258 (426)
                      .+.+...++.+  .+++++.++ |+.+.++.|.+.|+|.|-++..   .+....-....++.++++.+++++|+++|+.|
T Consensus       112 ~~~L~~~i~~l~~~girvSLFiDpd~~~i~~a~~lGad~IElhTG---~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~V  188 (242)
T d1m5wa_         112 RDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTG---CYADAKTDAEQAQELARIAKAATFAASLGLKV  188 (242)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECH---HHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeccchhhHHHHhhcCcceeeeecc---cccccccchhhHHHHHHHHHHHHHHHhcCCcc
Confidence            34444455533  478888887 7899999999999999999965   23332212223456899999999999999998


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEE-----cCCCCCCCHHHHHHHHHHHHH
Q 014369          259 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISL-----GDTIGVGTPGTVVPMLEAVMA  317 (426)
Q Consensus       259 ~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad~I~l-----~DT~G~~~P~~v~~li~~l~~  317 (426)
                      .+      |   ++ .+.+.+..+    .+. ++++++|     +|+.=++....|.++.+.+++
T Consensus       189 nA------G---Hg-Ln~~Nl~~i----~~ip~i~EvsIGHaiI~eal~~Gl~~aV~~~~~ii~~  239 (242)
T d1m5wa_         189 NA------G---HG-LTYHNVKAI----AAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE  239 (242)
T ss_dssp             EE------E---SS-CCTTTHHHH----HTCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cC------C---CC-cCccchHHH----hcCCCCeEEeccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            73      1   22 333444332    234 3667765     466666777777777776654

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.30  E-value=0.54  Score=41.93  Aligned_cols=109  Identities=18%  Similarity=0.184  Sum_probs=69.1

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCce----EEEEeCCCcCc
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEK----LAVHLHDTYGQ  334 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~~----i~~H~HNd~Gl  334 (426)
                      ++.+.|+|.+. .+.+.-..-++.+.+.||++|-+.=-.|.+   .-..+.+-++.+++..++..    |+...-++--.
T Consensus        56 v~tVigFP~G~-~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei  134 (225)
T d1mzha_          56 VCCVIGFPLGL-NKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEI  134 (225)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHH
T ss_pred             eEEEeccCCCC-CcHHHHHHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHH
Confidence            45567889765 455554455677888999999877555543   23455666666666655322    33344444332


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          335 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       335 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                       ..-+..|+++||+.|=+|-+ .+        ++++..|++-.+.+.
T Consensus       135 -~~a~~~a~~aGadfiKTSTG-~~--------~~gat~e~v~~m~~~  171 (225)
T d1mzha_         135 -KKAVEICIEAGADFIKTSTG-FA--------PRGTTLEEVRLIKSS  171 (225)
T ss_dssp             -HHHHHHHHHHTCSEEECCCS-CS--------SSCCCHHHHHHHHHH
T ss_pred             -HHHHHHHHHcccceEeecCC-CC--------CCCCCHHHHHHHHHH
Confidence             34566789999999988765 33        355778887766664

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.71  E-value=5.6  Score=35.74  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=87.6

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCeEEEecCCC-CCcccc--ccCHHHHHHHhHhc--CCCcEEEEeCChhhHHHHHHcCCC
Q 014369          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQ--LADARDVMEAVRDL--EGARLPVLTPNLKGFEAAIAAGAK  216 (426)
Q Consensus       142 ~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s-~~~~p~--~~D~~~v~~~i~~~--~~~~l~~l~~~~~di~~a~~~Gv~  216 (426)
                      +..++.+..++-++.|.+-|.+.|++|--++ |..-|.  -.....+...++.+  .+..+++=+...+=.+.|+++|++
T Consensus        19 g~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~iSIDT~~~~Va~~al~~Ga~   98 (270)
T d1eyea_          19 GCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQ   98 (270)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCC
T ss_pred             CcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceeechHhhhHHHHHHHHhcCCe
Confidence            4467999999999999999999999996443 221111  11112222223322  345555445667778999999999


Q ss_pred             EEEEeccC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCC------CCH-----HHHHHHHH
Q 014369          217 EVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA------IPP-----SKVAYVAK  284 (426)
Q Consensus       217 ~V~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r------~~~-----~~l~~~~~  284 (426)
                      .|.-.-.. .|                  .++.+.+.+.+..+.  +|+.-|.|-...      .++     .++.+..+
T Consensus        99 iINDvsg~~~d------------------~~m~~~~a~~~~~~v--lmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~  158 (270)
T d1eyea_          99 MVNDVSGGRAD------------------PAMGPLLAEADVPWV--LMHWRAVSADTPHVPVRYGNVVAEVRADLLASVA  158 (270)
T ss_dssp             EEEETTTTSSC------------------TTHHHHHHHHTCCEE--EECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred             EEEeccccccc------------------hhHHhhhhhccccee--eeeccccccccccccccccchhhhhhhHHHHHHH
Confidence            98843222 12                  123334556666554  454433222110      111     24455566


Q ss_pred             HHHhCCCC--EEEEcCCCCCC-CHHHHHHHHHHHHH
Q 014369          285 ELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMA  317 (426)
Q Consensus       285 ~l~~~Gad--~I~l~DT~G~~-~P~~v~~li~~l~~  317 (426)
                      .+...|+.  .|.|==-.|.. ++.+-.++++.+.+
T Consensus       159 ~~~~~Gi~~~~IilDPGiGFgKt~~~n~~lL~~l~~  194 (270)
T d1eyea_         159 DAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPE  194 (270)
T ss_dssp             HHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHH
T ss_pred             HHHhccccceEEEEccccccCcccchHHHHHHHHHh
Confidence            67778874  36665555553 56666777777654

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.74  Score=41.62  Aligned_cols=206  Identities=14%  Similarity=0.168  Sum_probs=122.0

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhC--CCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEEEEe-
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLT-  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~-  201 (426)
                      ++++|-|+=..      ..+.++...+++.-.+.  |+-.|    .+.|.|+|      .+.+.++..  +++++.+.+ 
T Consensus        12 ~~~iD~T~L~~------~~T~~~i~~lc~~A~~~~~~~aaV----CV~P~~v~------~a~~~l~~~~~~~v~v~tVig   75 (250)
T d1p1xa_          12 LKLMDLTTLND------DDTDEKVIALCHQAKTPVGNTAAI----CIYPRFIP------IARKTLKEQGTPEIRIATVTN   75 (250)
T ss_dssp             HTTEEEECCCT------TCCHHHHHHHHHHTEETTEECSEE----ECCGGGHH------HHHHHHHHTTCTTSEEEEEES
T ss_pred             hhhccCCCCCC------CCCHHHHHHHHHHHHhhcCCeEEE----EEChHHHH------HHHHHhhhcCCCcceEEEEec
Confidence            45677765332      34566655555543332  33222    24555543      334455533  356777655 


Q ss_pred             -C----C----hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC
Q 014369          202 -P----N----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  272 (426)
Q Consensus       202 -~----~----~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~  272 (426)
                       |    .    ...++.|++.|+++|-+.+..+-..     .-..+...+.+..+.+.++..|..+-+-|.      ...
T Consensus        76 FP~G~~~~e~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~~~~~~lKVIlE------t~~  144 (250)
T d1p1xa_          76 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFDLVKACKEACAAANVLLKVIIE------TGE  144 (250)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCCHHHHHHHHHHHHHHHHTTCEEEEECC------HHH
T ss_pred             cCCCCccHhHHHHHHHHHHHcCCCeEEEeecchhhc-----cccHHHHHHHHHHHHHhhccCCceEEEEEe------ccc
Confidence             3    1    2467889999999999998754431     112345566677777888888887664232      112


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCCceEEEEeC---CCcCcHHHHHHHHHH-cC
Q 014369          273 AIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQ-MG  346 (426)
Q Consensus       273 r~~~~~l~~~~~~l~~~Gad~I~l~DT~--G~~~P~~v~~li~~l~~~~p~~~i~~H~H---Nd~GlA~ANaLaAl~-aG  346 (426)
                      -++.+.+...++.+.++|+|-|--.--.  +..+|+++..+.+.+++..-..++++..-   -|+..+.+-..++.+ .|
T Consensus       145 Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG  224 (250)
T d1p1xa_         145 LKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFG  224 (250)
T ss_dssp             HCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHcCcCeEEecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHhC
Confidence            3455555667888999999965543332  25679999999888886432224666543   234444444444443 57


Q ss_pred             CCEEeecccCCCC
Q 014369          347 ISTVDCSVAGLGG  359 (426)
Q Consensus       347 a~~VD~Sv~GlGe  359 (426)
                      .++++....-+|-
T Consensus       225 ~~~~~~~~fRiGa  237 (250)
T d1p1xa_         225 ADWADARHYRFGA  237 (250)
T ss_dssp             TTSCSTTTBCEEE
T ss_pred             ccccccCceeeeH
Confidence            7777777777775

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=1.1  Score=43.49  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=75.2

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      .+-++...+.|+.+|.+.+..-+......+|+.  ...+.+.++++.+|+.|+. |.+.++  +|.|..   +++.+.+-
T Consensus       150 ~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~--~~~~~~~~~~~~~r~~g~~~vn~DLI--~GlPgq---T~~~~~~t  222 (441)
T d1olta_         150 LDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAFT  222 (441)
T ss_dssp             THHHHHHHHTTCCEEEEEEECCCHHHHHHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHHH
T ss_pred             hHHHHHHHHhCCceEEecchhcchhhhhhhhcC--CCHHHHHHHHHHHHhcccceeecccc--cccCCc---chHHHHHH
Confidence            356788889999999998855444444555553  2244567888899999986 777776  677754   57888888


Q ss_pred             HHHHHhCCCCEEEEcC------C---------CCCCCHHHHHHHHHHHHHh
Q 014369          283 AKELHDMGCFEISLGD------T---------IGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~D------T---------~G~~~P~~v~~li~~l~~~  318 (426)
                      ++.+.+++++.|.+-.      |         ...-.+++..++.....+.
T Consensus       223 l~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~  273 (441)
T d1olta_         223 LKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF  273 (441)
T ss_dssp             HHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHH
Confidence            8999999999998732      2         1123456666666655554

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=90.54  E-value=4.9  Score=36.19  Aligned_cols=136  Identities=13%  Similarity=0.058  Sum_probs=82.7

Q ss_pred             CChhhHHHHHHcCCCEEEEeccCChHHHhhhcC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCC
Q 014369          202 PNLKGFEAAIAAGAKEVAIFASASEAFSKSNIN------CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  275 (426)
Q Consensus       202 ~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~  275 (426)
                      .+--..+.+.++|.+-+.+.  -... . ..+|      .|.++.++.++++++   .-.++|.+.+-       .+--+
T Consensus        24 ~Da~SAr~~e~aGf~a~~~s--s~~~-a-as~G~pD~~~lt~~e~~~~~~~I~~---~~~lPv~~D~d-------~GyG~   89 (275)
T d1s2wa_          24 HNGLSARIVQEAGFKGIWGS--GLSV-S-AQLGVRDSNEASWTQVVEVLEFMSD---ASDVPILLDAD-------TGYGN   89 (275)
T ss_dssp             CSHHHHHHHHHHTCSCEEEC--CHHH-H-HTC---------CHHHHHHHHHHHH---TCSSCEEEECC-------SSCSS
T ss_pred             cCHHHHHHHHHcCCCEEEhh--HHHH-H-HHcCCCCCCccchhhHHHHHHhhhc---ccCCceeEecc-------ccccc
Confidence            34444556666788866654  1111 1 1122      356677777666543   34677775432       33347


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCC-------------CCCHHHHHHHHHHHHHhc--CCceEEEEeCC-----CcCcH
Q 014369          276 PSKVAYVAKELHDMGCFEISLGDTIG-------------VGTPGTVVPMLEAVMAVV--PVEKLAVHLHD-----TYGQS  335 (426)
Q Consensus       276 ~~~l~~~~~~l~~~Gad~I~l~DT~G-------------~~~P~~v~~li~~l~~~~--p~~~i~~H~HN-----d~GlA  335 (426)
                      +..+.+.++.+.++|+.-|.|-|...             ...+++....+++.++.-  |+.-|-..+=.     .+.-+
T Consensus        90 ~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~ea  169 (275)
T d1s2wa_          90 FNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEA  169 (275)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHH
T ss_pred             chHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHH
Confidence            88999999999999999999999752             344566555566655543  44334444422     12246


Q ss_pred             HHHHHHHHHcCCCEEe
Q 014369          336 LPNILISLQMGISTVD  351 (426)
Q Consensus       336 ~ANaLaAl~aGa~~VD  351 (426)
                      +.-+.+-.++|||.|=
T Consensus       170 i~R~~aY~eAGAD~vf  185 (275)
T d1s2wa_         170 LKRAEAYRNAGADAIL  185 (275)
T ss_dssp             HHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHhcCCCeee
Confidence            6666788899999653

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.28  E-value=0.78  Score=38.93  Aligned_cols=145  Identities=20%  Similarity=0.261  Sum_probs=91.9

Q ss_pred             chhhhHHHHhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHh
Q 014369          110 KDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i  189 (426)
                      ...|...+.+...-.++++|+=.|+-.=.+.       --+.-++..|.+.|++++-.|.+.++         +++.   
T Consensus        21 e~lr~~~~~~~~~~gr~pkVlla~~g~D~Hd-------~G~~~va~~l~~~G~eVi~lg~~~~~---------e~iv---   81 (168)
T d7reqa2          21 EEARELVEEFEQAEGRRPRILLAKMGQDGHD-------RGQKVIATAYADLGFDVDVGPLFQTP---------EETA---   81 (168)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEEECBTTCCCC-------HHHHHHHHHHHHTTCEEEECCTTBCH---------HHHH---
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEeCCccHHH-------HHHHHHHHHHHhCCcceecCCCcCcH---------HHHH---
Confidence            3445555555544556667776766522222       23356788999999999988876542         3333   


Q ss_pred             HhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeecC
Q 014369          190 RDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC  268 (426)
Q Consensus       190 ~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg~  268 (426)
                                        +.+.+.++|.|.+......             .++.+.++++..++.|.. +.+.    .| 
T Consensus        82 ------------------~aa~~~~advI~iSs~~~~-------------~~~~~~~l~~~L~~~g~~~v~Vi----vG-  125 (168)
T d7reqa2          82 ------------------RQAVEADVHVVGVSSLAGG-------------HLTLVPALRKELDKLGRPDILIT----VG-  125 (168)
T ss_dssp             ------------------HHHHHHTCSEEEEEECSSC-------------HHHHHHHHHHHHHHTTCTTSEEE----EE-
T ss_pred             ------------------HHHHccCCCEEEEecCccc-------------chHHHHHHHHHHHhcCCCCeEEE----Ee-
Confidence                              4677788999998854322             356678888888888853 3321    12 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc
Q 014369          269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV  319 (426)
Q Consensus       269 pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~  319 (426)
                         +..+++.    .+.+.++|++.|+=+.|   -.++.+.++++.+++++
T Consensus       126 ---G~ip~~d----~~~l~~~Gv~~iF~pgt---~~~e~a~~~~~~~~~~~  166 (168)
T d7reqa2         126 ---GVIPEQD----FDELRKDGAVEIYTPGT---VIPESAISLVKKLRASL  166 (168)
T ss_dssp             ---ESCCGGG----HHHHHHHTEEEEECTTC---CHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHH----HHHHHhCCCCEEECcCC---CHHHHHHHHHHHHHHHh
Confidence               2223333    24566799999885554   35678888888888764

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=2.2  Score=38.25  Aligned_cols=79  Identities=11%  Similarity=0.053  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH-HhC-CCCEEEE--cCCCCCCCHHHHHHHHHHHHHh
Q 014369          243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL-HDM-GCFEISL--GDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       243 ~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l-~~~-Gad~I~l--~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      .+.+.++.|++.|.....     +..|.-...+.+.+.+..+++ .+. ....+..  +...|...+.   +++..|.+ 
T Consensus        85 ~~i~~a~~a~~~Gad~~~-----v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~---~~l~~L~~-  155 (295)
T d1hl2a_          85 ESQQLAASAKRYGFDAVS-----AVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTL---DQINTLVT-  155 (295)
T ss_dssp             HHHHHHHHHHHHTCSEEE-----EECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCH---HHHHHHHT-
T ss_pred             HHHHHHHHHHhcCCceee-----eeeccccCCChHHHHHHHHHHhcccCcCccccccccccccccccc---cccccccc-
Confidence            344566677788876431     123444445555555544433 333 2233333  3345544443   23444433 


Q ss_pred             cCCceEEE-EeCCC
Q 014369          319 VPVEKLAV-HLHDT  331 (426)
Q Consensus       319 ~p~~~i~~-H~HNd  331 (426)
                      .|.+ +++ ..+.|
T Consensus       156 ~pnv-vgiK~~~~~  168 (295)
T d1hl2a_         156 LPGV-GALKQTSGD  168 (295)
T ss_dssp             STTE-EEEEECCCC
T ss_pred             Ccch-hhhcccccc
Confidence            4653 444 44554

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.72  E-value=2.9  Score=37.55  Aligned_cols=141  Identities=21%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      .+.|.+.|+.-|-++-.    |            ++.++   +..+..++.|    +.+.|+|.+. .+.+.-..-++.+
T Consensus        57 c~~A~~~~~aaVcV~P~----~------------v~~a~---~~L~gs~v~v----~tVigFP~G~-~~~~~K~~Ea~~A  112 (251)
T d1o0ya_          57 CLEARENRFHGVCVNPC----Y------------VKLAR---EELEGTDVKV----VTVVGFPLGA-NETRTKAHEAIFA  112 (251)
T ss_dssp             HHHHHHHTCSEEEECGG----G------------HHHHH---HHHTTSCCEE----EEEESTTTCC-SCHHHHHHHHHHH
T ss_pred             HHHHhhcCceEEEECHH----H------------HHHHH---HHhcCCCceE----EeeccCCCCC-CcHHHHHHHHHHH
Confidence            35677788887777521    1            22222   2334445444    4556788754 4555555556778


Q ss_pred             HhCCCCEEEEcCCCCCC---CHHHHHHHHHHHHHhcCCc----eEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          287 HDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE----KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~---~P~~v~~li~~l~~~~p~~----~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      .+.||++|-+.=-.|.+   .-..+.+-|+.+++..+..    .|+...-++.-.- ..+..|+++||+.|=+|-+ .+ 
T Consensus       113 i~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~-~a~~ia~~aGadfvKTSTG-f~-  189 (251)
T d1o0ya_         113 VESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTG-FG-  189 (251)
T ss_dssp             HHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECCCS-SS-
T ss_pred             HHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHH-HHHHHHHHhCcceeeccCC-CC-
Confidence            88999999988777774   5566777787877765432    2444556666555 4567889999999988765 32 


Q ss_pred             CCCCCCCCCcccHHHHHHHHHh
Q 014369          360 CPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       360 cP~a~graGNa~lEevv~~L~~  381 (426)
                             +|.+..|++-.+.+.
T Consensus       190 -------~~gat~e~V~~m~~~  204 (251)
T d1o0ya_         190 -------TGGATAEDVHLMKWI  204 (251)
T ss_dssp             -------SCCCCHHHHHHHHHH
T ss_pred             -------CCCcCHHHHHHHHHH
Confidence                   355777887766653

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=2.2  Score=39.52  Aligned_cols=136  Identities=16%  Similarity=0.087  Sum_probs=83.3

Q ss_pred             HHHHHcCCCEEEEeccC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhc---CCcEEEEEEeeecCCCCCCC
Q 014369          208 EAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAI  274 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~--------Sd~~--~~~~~~~s~~e~l~~~~~~v~~Ak~~---G~~v~~~v~~~fg~pd~~r~  274 (426)
                      ++|.++|.|.|.|...-        |+..  +.-.+|-|.++=+..+.++++.+|+.   .+.|.+-++..-..  .+..
T Consensus       148 ~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~--~~g~  225 (330)
T d1ps9a1         148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV--EDGG  225 (330)
T ss_dssp             HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS--TTCC
T ss_pred             HHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccc--cCCC
Confidence            46678999998887531        2322  33346777777666777777776664   34555555543222  2346


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcC--------CCCCCCH-HHHHHHHHHHHHhcCCceEEEEeC-CCcCcHHHHHHHHHH
Q 014369          275 PPSKVAYVAKELHDMGCFEISLGD--------TIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQ  344 (426)
Q Consensus       275 ~~~~l~~~~~~l~~~Gad~I~l~D--------T~G~~~P-~~v~~li~~l~~~~p~~~i~~H~H-Nd~GlA~ANaLaAl~  344 (426)
                      +.++..++++.+.++|++.+.+.-        ....-.| .....+.+.+|+.+.. ++..-+. +|    ..-+..+++
T Consensus       226 ~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~i~~----~~~ae~~l~  300 (330)
T d1ps9a1         226 TFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSL-PLVTTNRIND----PQVADDILS  300 (330)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSS-CEEECSSCCS----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCc-eEEEeCCCCC----HHHHHHHHH
Confidence            789999999999999999877532        1111112 3345667777776643 4444332 22    345667888


Q ss_pred             cC-CCEE
Q 014369          345 MG-ISTV  350 (426)
Q Consensus       345 aG-a~~V  350 (426)
                      .| ||.|
T Consensus       301 ~g~~D~V  307 (330)
T d1ps9a1         301 RGDADMV  307 (330)
T ss_dssp             TTSCSEE
T ss_pred             CCCcchh
Confidence            88 7755

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=89.40  E-value=0.083  Score=47.57  Aligned_cols=186  Identities=16%  Similarity=0.178  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEec
Q 014369          150 KVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFA  222 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~  222 (426)
                      -.+-++.|.++|++.|-+    |.|+     |.++-..+.++.++..++..+-  .++.+ .+-++...++|++.|.+..
T Consensus        25 l~~~i~~l~~~g~d~iHiDImDG~Fv-----pn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~   99 (230)
T d1rpxa_          25 LGEQVKAIEQAGCDWIHVDVMDGRFV-----PNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHC   99 (230)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEeCccCCcC-----CccccChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEec
Confidence            345677788999997666    4454     3333334566677766665444  45555 4678888999999988876


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----C
Q 014369          223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----D  298 (426)
Q Consensus       223 ~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~----D  298 (426)
                      -..+              .....++++++|++|.++...+.     |.   ++.+.+..+..     -+|.|-+-    -
T Consensus       100 E~~~--------------~~~~~~~i~~ik~~g~k~Gialn-----p~---T~~~~l~~~l~-----~vD~VllM~V~PG  152 (230)
T d1rpxa_         100 EQSS--------------TIHLHRTINQIKSLGAKAGVVLN-----PG---TPLTAIEYVLD-----AVDLVLIMSVNPG  152 (230)
T ss_dssp             STTT--------------CSCHHHHHHHHHHTTSEEEEEEC-----TT---CCGGGGTTTTT-----TCSEEEEESSCTT
T ss_pred             cccc--------------cccHHHHHHHHHHcCCeEEEEeC-----CC---CCHHHHHHHHh-----hCCEEEEEEecCC
Confidence            4311              01245678889999998875442     32   44555544442     25555332    2


Q ss_pred             CCCCCCHHHHHHHHHHHH----HhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHH
Q 014369          299 TIGVGTPGTVVPMLEAVM----AVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATED  374 (426)
Q Consensus       299 T~G~~~P~~v~~li~~l~----~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEe  374 (426)
                      ..|...-..+.+.|+.++    ++.+...|++    |=|.-.-|+-...++||+.+   |.| +.      =-++...++
T Consensus       153 f~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~v----DGGIn~~~i~~l~~~Gad~~---V~G-S~------if~~~d~~~  218 (230)
T d1rpxa_         153 FGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANAL---VAG-SA------VFGAPDYAE  218 (230)
T ss_dssp             CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEE---EES-HH------HHTSSCHHH
T ss_pred             cccchhhhhhHHHHHHHHHHHHhcCCceEEEE----ECCcCHHHHHHHHHcCCCEE---EEC-hH------HHCCCCHHH
Confidence            233322233444444443    3344555666    66777778888899999987   333 11      123445666


Q ss_pred             HHHHHHh
Q 014369          375 VVYMLSG  381 (426)
Q Consensus       375 vv~~L~~  381 (426)
                      .+..|+.
T Consensus       219 ~i~~lk~  225 (230)
T d1rpxa_         219 AIKGIKT  225 (230)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            6777765

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=89.30  E-value=3.9  Score=36.72  Aligned_cols=205  Identities=15%  Similarity=0.174  Sum_probs=111.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-c--CCCcEEEEe--
Q 014369          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-L--EGARLPVLT--  201 (426)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~--~~~~l~~l~--  201 (426)
                      +.++|-||=+.      ..+.++..++++...+.|+..  ....+.|.|+|      .+.+.++. .  .++++.+.+  
T Consensus        12 ~~liDhTlL~p------~~T~~~I~~lc~eA~~~~~~~--aaVCV~P~~V~------~a~~~L~~~~~~~~v~v~tVigF   77 (256)
T d2a4aa1          12 ICLTDHTFLDE------NGTEDDIRELCNESVKTCPFA--AAVCVYPKFVK------FINEKIKQEINPFKPKIACVINF   77 (256)
T ss_dssp             HTTEEEECCCT------TCCHHHHHHHHHHHHSSSSCC--SEEEECGGGHH------HHHHHHHHHSSSCCSEEEEEEST
T ss_pred             HHhccccCCCC------CCCHHHHHHHHHHHHHhCCCe--EEEEeCHHHHH------HHHHHhhhhccCCCceEEeecCC
Confidence            45677776442      557888888888888877542  11123455443      33445543 2  246666655  


Q ss_pred             CC--------hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEEeeecCCCC
Q 014369          202 PN--------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  271 (426)
Q Consensus       202 ~~--------~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~--G~~v~~~v~~~fg~pd~  271 (426)
                      |.        ...++.|++.|+++|-+.+..+....      ...+.++.....+..+++.  +..+-+  ..    +..
T Consensus        78 P~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~------g~~~~v~e~~~~i~~~~~~~~~~~lKV--Il----Et~  145 (256)
T d2a4aa1          78 PYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIE------NTDEGLKEATKLTQSVKKLLTNKILKV--II----EVG  145 (256)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHH------SHHHHHHHHHHHHHHHHTTCTTSEEEE--EC----CHH
T ss_pred             CcccchHHHHHHHHHHHHHcCCCeEEEeccHHHHhc------CcHHHHHHHHHHHHHHHhhccCCeeEe--ee----hhh
Confidence            41        24678899999999999987654321      1223344444445555542  333332  21    111


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC----CCCHHHHHHHHHHHHHhcC-----CceEEEEeC---CCcCcHHHHH
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAVVP-----VEKLAVHLH---DTYGQSLPNI  339 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G----~~~P~~v~~li~~l~~~~p-----~~~i~~H~H---Nd~GlA~ANa  339 (426)
                      .-.+.+.+........++|+|-  ++=+.|    ..+|+.+..+.+.+++.+.     ..+++++.-   -|+..|..-.
T Consensus       146 ~L~~~e~i~~~~~~~~~aGadF--VKTSTG~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i  223 (256)
T d2a4aa1         146 ELKTEDLIIKTTLAVLNGNADF--IKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYI  223 (256)
T ss_dssp             HHCSHHHHHHHHHHHHTTTCSE--EECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHhcccHH--HHhccCCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHH
Confidence            1234444455555567899995  455555    5789999998888875321     124666543   3344444443


Q ss_pred             HHHHH-cCCCEEeecccCCCC
Q 014369          340 LISLQ-MGISTVDCSVAGLGG  359 (426)
Q Consensus       340 LaAl~-aGa~~VD~Sv~GlGe  359 (426)
                      .++.+ .|..+++....=+|-
T Consensus       224 ~~g~~~lG~~~~~~~~fRIGt  244 (256)
T d2a4aa1         224 LLARRFLSSLACHPDNFRIGS  244 (256)
T ss_dssp             HHHHHHTC------CCEEEEE
T ss_pred             HHHHHhcccccccCCceeeeH
Confidence            33333 466666666665665

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.24  E-value=6.6  Score=34.39  Aligned_cols=187  Identities=13%  Similarity=0.104  Sum_probs=115.9

Q ss_pred             CCCCeEEEecCCCCCccccccCHHHHHHHhHhc----CCCcEEEEeCCh-h---------h----HHHHHHc-CCCEEEE
Q 014369          160 SGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNL-K---------G----FEAAIAA-GAKEVAI  220 (426)
Q Consensus       160 ~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~~~-~---------d----i~~a~~~-Gv~~V~i  220 (426)
                      -++|.||+=.-.-    .. .+.+.+.+.+..+    .+.++..-+|.. +         .    ++.+++. +++.|-+
T Consensus        27 ~~~D~vElRlD~l----~~-~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDi  101 (236)
T d1sfla_          27 DAIDVLELRIDQF----EN-VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDI  101 (236)
T ss_dssp             TTCSEEEEECTTS----TT-CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEE
T ss_pred             cCCCEEEEEeccc----cC-CCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCHHHHHHHHHHHHHhcCCchhhh
Confidence            4899999975321    11 1344555555433    244555545532 1         1    2333443 6899998


Q ss_pred             eccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 014369          221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI  300 (426)
Q Consensus       221 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~  300 (426)
                      -....+             .+++..+.++.++..|.++.  +|+-.   .....+.+.+.++.+.+.+.|+|.+-|+=+ 
T Consensus       102 E~~~~~-------------~~~~~~~~~~~~~~~~~~vI--~S~H~---f~~TP~~~el~~~~~~~~~~gaDivKia~~-  162 (236)
T d1sfla_         102 EWQADI-------------DIEKHQRIITHLQQYNKEVI--ISHHN---FESTPPLDELQFIFFKMQKFNPEYVKLAVM-  162 (236)
T ss_dssp             ECCTTS-------------CHHHHHHHHHHHHHTTCEEE--EEEEE---SSCCCCHHHHHHHHHHHHTTCCSEEEEEEC-
T ss_pred             hhcchh-------------hHHHHHHHHHHhhcCCCEEE--EEEcC---CCCCCCHHHHHHHHHHHHHhCCCeEEEEEe-
Confidence            765322             24455678889999998876  34331   122335589999999999999999999844 


Q ss_pred             CCCCHHHHHHHHHHHHHh--cCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHH
Q 014369          301 GVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYM  378 (426)
Q Consensus       301 G~~~P~~v~~li~~l~~~--~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~  378 (426)
                       .-.+.++.++++.....  .+..++..-+=-.+  |...=+.+-..|...+-+++.   + |-   ..|+.+++++-..
T Consensus       163 -~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~--G~~sRi~~~~~GS~~tya~~~---~-~s---APGQ~~~~~lr~~  232 (236)
T d1sfla_         163 -PHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKL--GLISRTAQGVFGGALTYGCIG---E-PQ---APGQIDVTDLKAQ  232 (236)
T ss_dssp             -CSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGG--GHHHHHTGGGGTBCEEEEBSS---C-CS---STTCCBHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHhhccCCCEEEEecCCc--chHHHHHHHHhCCceEEccCC---C-CC---CCCCcCHHHHHHH
Confidence             45788888888766432  22334544322222  345566667788888888763   3 22   5679999998777


Q ss_pred             HH
Q 014369          379 LS  380 (426)
Q Consensus       379 L~  380 (426)
                      |+
T Consensus       233 l~  234 (236)
T d1sfla_         233 VT  234 (236)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=2.2  Score=38.35  Aligned_cols=76  Identities=7%  Similarity=-0.073  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC-CCC-EEE-EcCCCCCCCHHHHHHHHHHHHHh
Q 014369          242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCF-EIS-LGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       242 ~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~-Gad-~I~-l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      +...+..++|++.|.....     ...|.-.+.+.+.+.+..+.+.++ +.. .|| .+...|...+.++   ++.+. .
T Consensus        83 ~~~i~~~~~a~~~Gad~~~-----~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~---~~~L~-~  153 (292)
T d2a6na1          83 AEAISLTQRFNDSGIVGCL-----TVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPET---VGRLA-K  153 (292)
T ss_dssp             HHHHHHHHTTTTSSCCEEE-----EECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHH---HHHHH-T
T ss_pred             HHHHHHhccHHhcCCccee-----ccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHH---HHHHh-c
Confidence            3344566788888887431     124555566777787777777664 333 233 4666676444433   33443 3


Q ss_pred             cCCceEEEE
Q 014369          319 VPVEKLAVH  327 (426)
Q Consensus       319 ~p~~~i~~H  327 (426)
                      .|.+ +++-
T Consensus       154 ~pnv-~giK  161 (292)
T d2a6na1         154 VKNI-IGIK  161 (292)
T ss_dssp             STTE-EEEE
T ss_pred             CCCE-EEEE
Confidence            5753 5553

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.96  E-value=2.4  Score=38.20  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.+.++.+.+.|++.|.+.-|.|=   ++.++-.++++.+.+... ..++-+|+ +++.--++..+..|.++|
T Consensus        23 g~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G  102 (296)
T d1xxxa1          23 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  102 (296)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999874   578888889998888774 45676765 777888899999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  381 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~  381 (426)
                      ++.+-...--..          .++-++++.+++.
T Consensus       103 ad~v~i~~P~~~----------~~~~~~l~~~~~~  127 (296)
T d1xxxa1         103 AHGLLVVTPYYS----------KPPQRGLQAHFTA  127 (296)
T ss_dssp             CSEEEEECCCSS----------CCCHHHHHHHHHH
T ss_pred             CCeEEEEeccCC----------CCCHHHHHHHHHH
Confidence            998754433222          2334666666653

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.90  E-value=4  Score=36.37  Aligned_cols=40  Identities=13%  Similarity=-0.043  Sum_probs=22.2

Q ss_pred             HHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhC
Q 014369          245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM  289 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~  289 (426)
                      .+.++.|++.|....   +  ...|.-.+.+.+.+.+..+.+.++
T Consensus        86 i~~a~~A~~~Gad~v---~--v~pP~y~~~s~~~i~~~~~~ia~a  125 (295)
T d1o5ka_          86 LKLVKQAEKLGANGV---L--VVTPYYNKPTQEGLYQHYKYISER  125 (295)
T ss_dssp             HHHHHHHHHHTCSEE---E--EECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEE---E--EeCCCCCCCCHHHHHHHHHHHHhc
Confidence            355566777776532   1  123444455666666666666654

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.42  Score=44.10  Aligned_cols=102  Identities=14%  Similarity=0.103  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCC-CCCCCHHHHHHHHHHHHHhcCC
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV  321 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT-~G~~~P~~v~~li~~l~~~~p~  321 (426)
                      ++++++.|++.|+-|-+     |.+     .+.+.+..+++++.+.... +|.+.-. ..++....+..++..+.+..+.
T Consensus         5 ~k~ll~~A~~~~yAV~A-----fNv-----~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~v   74 (284)
T d1gvfa_           5 TKYLLQDAQANGYAVPA-----FNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM   74 (284)
T ss_dssp             SHHHHHHHHHHTCCEEE-----EEC-----CSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCcEEEE-----EEE-----CCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhCCHHHHHHHHHHHHHhcCC
Confidence            35778899999997753     321     3568888999999888876 4444322 2234567788888888877764


Q ss_pred             ceEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369          322 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  358 (426)
Q Consensus       322 ~~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  358 (426)
                       |+.+|.  |.|........|+++|.+  .+|+|-..+-
T Consensus        75 -pV~lHl--DH~~~~e~i~~ai~~GftSVMiD~S~lp~e  110 (284)
T d1gvfa_          75 -PLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFA  110 (284)
T ss_dssp             -CBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHH
T ss_pred             -eEEeee--ccccchHHHHHHHhcCCCeEEEECCCCCHH
Confidence             677766  667889999999999998  7788866443

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=88.71  E-value=2.3  Score=37.20  Aligned_cols=185  Identities=16%  Similarity=0.144  Sum_probs=109.1

Q ss_pred             HHHHHHHHhCCCCeEEE----ecCCCCCccccccCHHHHHHHhHhcCCCcEE--EEeCC-hhhHHHHHHcCCCEEEEecc
Q 014369          151 VELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPN-LKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~~-~~di~~a~~~Gv~~V~i~~~  223 (426)
                      .+-++.|.+.|++.|-+    |.|+..     ++=..+.++.++..++..+-  .|+.+ .+-++...++|++.+.+.+-
T Consensus        18 ~~~i~~l~~~g~d~iHiDImDG~Fvpn-----~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E   92 (221)
T d1tqja_          18 GEEIKAVDEAGADWIHVDVMDGRFVPN-----ITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVE   92 (221)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEBSSSSSC-----BCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECS
T ss_pred             HHHHHHHHHcCCCEEEEECccCCccCc-----cccCcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEEeec
Confidence            44567888999997766    666633     22123456667766665544  45544 46788999999999988763


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cCC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----GDT  299 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l----~DT  299 (426)
                      ...              -+.+.+.+.+.++.|+++...+.     |.   ++.+.+..+.+     -+|.|-+    +.-
T Consensus        93 ~~~--------------~~~~~~~~~~i~~~g~~~Gial~-----p~---T~~~~l~~~l~-----~~d~vlvM~V~pG~  145 (221)
T d1tqja_          93 HNA--------------SPHLHRTLCQIRELGKKAGAVLN-----PS---TPLDFLEYVLP-----VCDLILIMSVNPGF  145 (221)
T ss_dssp             TTT--------------CTTHHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTGG-----GCSEEEEESSCC--
T ss_pred             ccc--------------ChhhHHHHHHHHHCCCCEEEEec-----CC---CcHHHHHHHHh-----hhcEEEEEEecCCC
Confidence            211              11245677788999998875543     32   34455544442     2454444    222


Q ss_pred             CCCCCH----HHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHH
Q 014369          300 IGVGTP----GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV  375 (426)
Q Consensus       300 ~G~~~P----~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEev  375 (426)
                      .|...-    ..+.++.+.+.++.+...|.+    |=|.-.-|+-...++||+.+   |.| +.      =-++...++.
T Consensus       146 ~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~V----DGGIn~~~i~~l~~~Gad~~---V~G-S~------if~~~d~~~~  211 (221)
T d1tqja_         146 GGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGANAI---VAG-SA------VFNAPNYAEA  211 (221)
T ss_dssp             --CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCCEE---EES-HH------HHTSSCHHHH
T ss_pred             CCcccchhhHHHHHHHHhhhhccccceEEEE----ECCcCHHHHHHHHHcCCCEE---EEC-hH------HhCCCCHHHH
Confidence            333333    334444444444555556766    55777778889999999987   333 11      1234456666


Q ss_pred             HHHHHh
Q 014369          376 VYMLSG  381 (426)
Q Consensus       376 v~~L~~  381 (426)
                      +..|+.
T Consensus       212 i~~lr~  217 (221)
T d1tqja_         212 IAGVRN  217 (221)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            766664

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=88.68  E-value=3.3  Score=37.05  Aligned_cols=37  Identities=11%  Similarity=-0.010  Sum_probs=18.2

Q ss_pred             HHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       246 ~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.++.|++.|....   +  +..|.-.+.+.+.+.+..+.+.
T Consensus        90 ela~~a~~~Gad~i---~--~~pP~~~~~s~~~~~~~~~~v~  126 (293)
T d1f74a_          90 ELGKYATELGYDCL---S--AVTPFYYKFSFPEIKHYYDTII  126 (293)
T ss_dssp             HHHHHHHHHTCSEE---E--CCCCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEe---e--ccCccccccchHHHHHHHhccc
Confidence            44556666666542   1  2234444455555555554443

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.92  E-value=5.6  Score=37.10  Aligned_cols=178  Identities=15%  Similarity=0.072  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCC---CCCccccccCHHHHHHHhHhc---CCCcEEEEeCChhhHHHHHHcCCCEEE
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGAKEVA  219 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~~~~di~~a~~~Gv~~V~  219 (426)
                      +.++-.++++.|.++|.+.+=-|.|-   +|.....+.  ++-++.++++   -+..+..=+....+++.+.+. +|.+.
T Consensus       106 S~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g--~~gL~~l~~~k~~~glpvvTdV~~~~~~~~~~e~-~DilQ  182 (338)
T d1vr6a1         106 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG--EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-ADIIQ  182 (338)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT--HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-CSEEE
T ss_pred             CHHHHHHHHHHHHHhCccccccceecccccccccccch--HHHHHHHHHHHhhcCceeEEeccchhhhhhhhce-eeeEE
Confidence            67888999999999999988877652   332222222  3334444332   244444334677888888775 89988


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT  299 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT  299 (426)
                      |...     +..+            .++++.+-+.|..|-  |..-      --.++++....++.+...|...|.|+.-
T Consensus       183 I~A~-----~~~n------------~~LL~~~g~t~kpV~--lKkG------~~~s~~e~l~aae~i~~~Gn~~vilcER  237 (338)
T d1vr6a1         183 IGAR-----NAQN------------FRLLSKAGSYNKPVL--LKRG------FMNTIEEFLLSAEYIANSGNTKIILCER  237 (338)
T ss_dssp             ECGG-----GTTC------------HHHHHHHHTTCSCEE--EECC------TTCCHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             echh-----hccC------------HHHHHHhhccCCcEE--ecCc------cccchhhhhhhHHHHHhcCCccceeeec
Confidence            8643     2221            255566667787765  4421      2367899999999999999988888774


Q ss_pred             CCC-C--CH---HHHHHHHHHHHHhcCCceEEE---EeCCCcCcHHHHHHHHHHcCCC--EEeec
Q 014369          300 IGV-G--TP---GTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGIS--TVDCS  353 (426)
Q Consensus       300 ~G~-~--~P---~~v~~li~~l~~~~p~~~i~~---H~HNd~GlA~ANaLaAl~aGa~--~VD~S  353 (426)
                      -=. .  ..   .++.. +..+++. +..|+-+   |.=-+.-+...-+.+|+.+||+  .|++=
T Consensus       238 G~~t~~~~~~~~lD~~~-i~~~k~~-~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~H  300 (338)
T d1vr6a1         238 GIRTFEKATRNTLDISA-VPIIRKE-SHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVH  300 (338)
T ss_dssp             CBCCSCCSSSSBCCTTH-HHHHHHH-BSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBC
T ss_pred             cccccccccccchhhcc-cceeecc-ccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeC
Confidence            310 0  01   12222 3344443 2234554   6655566777889999999999  45543

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=87.55  E-value=5.5  Score=35.68  Aligned_cols=181  Identities=13%  Similarity=0.052  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecC-----CCCCcc---c--ccc-----------CHHHHHHHhHh--cCCCcEEEEeC
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSF-----VSPKWV---P--QLA-----------DARDVMEAVRD--LEGARLPVLTP  202 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~-----~s~~~~---p--~~~-----------D~~~v~~~i~~--~~~~~l~~l~~  202 (426)
                      +.+.-.++++...++|.+.|-+=.+     ..++..   +  ...           ..++..+..+.  ..+..+.+-+.
T Consensus        32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~f  111 (280)
T d2zdra2          32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTPF  111 (280)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCccccccc
Confidence            6777888999999999998876432     111000   0  000           11222222221  23566655566


Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  282 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~  282 (426)
                      ..+.++.+...|++.+-|.-.  +.              .. ..+++++.+.+.++-  ++       .|..+.+++.++
T Consensus       112 d~~s~~~~~~~~~~~~KIaS~--d~--------------~n-~~Li~~i~k~~kpii--iS-------tG~s~~~EI~~a  165 (280)
T d2zdra2         112 SRAAALRLQRMDIPAYKIGSG--EC--------------NN-YPLIKLVASFGKPII--LS-------TGMNSIESIKKS  165 (280)
T ss_dssp             SHHHHHHHHHHTCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHHHH
T ss_pred             hhhcccccccccccceeccch--hc--------------cc-cHhhhhhhhccCcee--ec-------ccccchhHhhhh
Confidence            888999999999998888632  21              00 245666777788876  33       245678888898


Q ss_pred             HHHHHhCCCCEEEEcCCCCCCCHHHH--HHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 014369          283 AKELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  355 (426)
Q Consensus       283 ~~~l~~~Gad~I~l~DT~G~~~P~~v--~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V--D~Sv~  355 (426)
                      ++.+.+.+.+.+-+==+..+=+|.+-  -..+..+++.+|...|++=-|.. |  ...+++|+..||++|  |.|+.
T Consensus       166 v~~~~~~~~~~~llhc~s~YPt~~~~~nL~~i~~lk~~f~~~~iG~SdH~~-g--~~~~~~Ava~GA~~IEKH~tl~  239 (280)
T d2zdra2         166 VEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERHFTDR  239 (280)
T ss_dssp             HHHHHHHTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHTTCCEEEEEBCSC
T ss_pred             hhhhhhccccceEEEeeccCccccccccccccceeeccccccceeecCccc-c--hhhHHHHHHCCCeEEEEEEEeC
Confidence            88888888876555334444344322  23388899999876789977753 3  567888999999999  66664

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.37  E-value=1.5  Score=39.58  Aligned_cols=155  Identities=15%  Similarity=0.070  Sum_probs=98.8

Q ss_pred             hhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC-CCCCCHHHHHHHH
Q 014369          205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPPSKVAYVA  283 (426)
Q Consensus       205 ~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd-~~r~~~~~l~~~~  283 (426)
                      +|+=.....-+|.+-+...++-.+-        ++.   +++-++.+|++|+.|.      +|... +.......+.++.
T Consensus        29 eD~Le~ag~yID~~K~g~Gt~~l~p--------~~~---l~eKI~l~~~~~V~v~------~GGtlfE~a~~qg~~~~y~   91 (251)
T d1qwga_          29 EDYLKVCGDYIDFVKFGWGTSAVID--------RDV---VKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFL   91 (251)
T ss_dssp             HHHHHHHGGGCSEEEECTTGGGGSC--------HHH---HHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhhhheeEEEecCceeeecC--------HHH---HHHHHHHHHHcCCeEe------CCcHHHHHHHHcCCHHHHH
Confidence            4444455567899999877665432        222   4577889999999876      22100 0000112355677


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEeCC---CcCcH----HHHHHHHHHcCCCEE--eec
Q 014369          284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD---TYGQS----LPNILISLQMGISTV--DCS  353 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~-~p~~~i~~H~HN---d~GlA----~ANaLaAl~aGa~~V--D~S  353 (426)
                      +.+.++|.+.|-+.|+..-+...+-.++|+.+++. +-. .-++|-.+   +.-+.    +-.+...++|||+.|  ++-
T Consensus        92 ~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~V-~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEar  170 (251)
T d1qwga_          92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMV-LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR  170 (251)
T ss_dssp             HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEE-EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred             HHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCEE-eecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehh
Confidence            78889999999999999999999999999999875 422 23444332   12222    334667799999955  543


Q ss_pred             c----cCCCCCCCCCCCCCcccHHHHHHHHHhCC
Q 014369          354 V----AGLGGCPYAKGASGNVATEDVVYMLSGLG  383 (426)
Q Consensus       354 v----~GlGecP~a~graGNa~lEevv~~L~~lG  383 (426)
                      =    -|+=+      ..|+.....+-..++.++
T Consensus       171 Esg~~~Gi~~------~~g~~r~~~i~~i~~~l~  198 (251)
T d1qwga_         171 ESGKGKGLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             hcCCccceec------CCCChhHHHHHHHHHhCC
Confidence            2    24545      678887666555554444

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=87.33  E-value=1.8  Score=39.05  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=80.2

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHH---HHHH---HHHHHHhcCC--ce--EEEEeCCC
Q 014369          262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT---VVPM---LEAVMAVVPV--EK--LAVHLHDT  331 (426)
Q Consensus       262 v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~---v~~l---i~~l~~~~p~--~~--i~~H~HNd  331 (426)
                      ++.++|+|.+. .+.+--..-++.+.+.||++|-+.=-.|.+.-..   +.+.   +..+++..++  .+  |+...=++
T Consensus        71 v~tVigFP~G~-~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~  149 (256)
T d2a4aa1          71 IACVINFPYGT-DSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT  149 (256)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS
T ss_pred             EEeecCCCccc-chHHHHHHHHHHHHHcCCCeEEEeccHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCc
Confidence            55667889864 4444444446777789999998876666543222   2333   3444443332  12  33344566


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH--------------hCCCC--CCc-ChhhHH
Q 014369          332 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS--------------GLGVE--TNV-DLRKLM  394 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~--------------~lG~~--~~i-Dl~~L~  394 (426)
                      .-+-.+..++++++|||+|=+|-+ .+        .+.+..|++..+.+              +.|++  -|| +++...
T Consensus       150 ~e~i~~~~~~~~~aGadFVKTSTG-~~--------~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~  220 (256)
T d2a4aa1         150 EDLIIKTTLAVLNGNADFIKTSTG-KV--------QINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS  220 (256)
T ss_dssp             HHHHHHHHHHHHTTTCSEEECCCS-CS--------SCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHhccC-CC--------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHH
Confidence            666777888889999999988754 33        24466666554432              12343  244 556666


Q ss_pred             HHHHHHHHHhCC
Q 014369          395 LAGDFINKHLGR  406 (426)
Q Consensus       395 ~la~~v~~~~g~  406 (426)
                      ++-+...+.+|.
T Consensus       221 ~~i~~g~~~lG~  232 (256)
T d2a4aa1         221 HYILLARRFLSS  232 (256)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHhccc
Confidence            666666676664

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=87.25  E-value=11  Score=34.53  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEee--ecCCCCCC-------CCH-
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGA-------IPP-  276 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~--fg~pd~~r-------~~~-  276 (426)
                      ++...++|+..||+-+-+.+.--        ...++++.+++++|++.|++|-..+-+.  +..|..-.       .+. 
T Consensus        33 ~~~lk~~G~n~VRlrvW~~p~~g--------~~~~~~~~~~~~~a~~~Gm~vll~~hysd~Wadp~~q~~P~aw~~~~~~  104 (334)
T d1foba_          33 ETILADAGINSIRQRVWVNPSDG--------SYDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTDLG  104 (334)
T ss_dssp             HHHHHHHTCCEEEEEECSCCTTC--------TTCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSCHH
T ss_pred             HHHHHHcCCCEEEeeeeeCCCCC--------cCcHHHHHHHHHHHHHCCCEEEEEecCCCcccCCCcCCCcccccccccc
Confidence            45667899999888764333211        1247888899999999999998766421  11111000       111 


Q ss_pred             -------HHHHHHHHHHHhCCC--CEEEEcCCC--CC-------CCHHHHHHHHHH----HHHhc--CCceEEEEeCCCc
Q 014369          277 -------SKVAYVAKELHDMGC--FEISLGDTI--GV-------GTPGTVVPMLEA----VMAVV--PVEKLAVHLHDTY  332 (426)
Q Consensus       277 -------~~l~~~~~~l~~~Ga--d~I~l~DT~--G~-------~~P~~v~~li~~----l~~~~--p~~~i~~H~HNd~  332 (426)
                             ++...+++++.+.|.  +.+.|-.=.  |.       -.+....+|+++    +|+..  +...+.+|+|+-.
T Consensus       105 ~~~~~~~~~t~~v~~~~k~~~~~~~~vqIgNE~n~g~~w~~g~~~~~~~~a~ll~a~~~aVr~~~~~~~~~i~~~~~~~~  184 (334)
T d1foba_         105 TLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDDGW  184 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTT
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCceEEEcccccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccceeeecccCC
Confidence                   345567777778874  466664432  22       344566666544    44433  3446888888754


Q ss_pred             CcHH--HHHHHHHHcCCC-EEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          333 GQSL--PNILISLQMGIS-TVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       333 GlA~--ANaLaAl~aGa~-~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      ....  ...-.-+..|.. .++--+.|+-  ||... .+...+.++...++
T Consensus       185 ~~~~~~~~~~~~~~~g~~~~~~~Dvig~s--yYp~w-~~~~~l~~l~~~l~  232 (334)
T d1foba_         185 SWDQQNYFYETVLATGELLSTDFDYFGVS--YYPFY-SASATLASLKTSLA  232 (334)
T ss_dssp             CHHHHHHHHHHHHHTSSSCGGGCCEEEEE--CCSSS-CTTCCHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHhcCCCCCCCcCeEEEe--cCCCC-CCcccHHHHHHHHH
Confidence            4332  223334455532 2333344443  34333 23334444444443

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=86.91  E-value=1.1  Score=40.55  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.+.++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+++ +++.--++..+..|-++|
T Consensus        18 g~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G   97 (295)
T d1hl2a_          18 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG   97 (295)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcC
Confidence            468999999999999999999999999988   4778898999998888764 45677776 777888999999999999


Q ss_pred             CCEEeec
Q 014369          347 ISTVDCS  353 (426)
Q Consensus       347 a~~VD~S  353 (426)
                      |+.+=..
T Consensus        98 ad~~~v~  104 (295)
T d1hl2a_          98 FDAVSAV  104 (295)
T ss_dssp             CSEEEEE
T ss_pred             Cceeeee
Confidence            9977554

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.87  E-value=4.1  Score=36.04  Aligned_cols=138  Identities=20%  Similarity=0.229  Sum_probs=77.4

Q ss_pred             HHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 014369          208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  287 (426)
Q Consensus       208 ~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~  287 (426)
                      +.|.+.|+.-|-++    +.|            +..+++   ..+..+++|.    .+.|+|.+ ..+.+.-..-++.+.
T Consensus        43 ~~A~~~~~~avcV~----p~~------------v~~a~~---~l~~s~v~v~----tVigFP~G-~~~~~~k~~E~~~Ai   98 (234)
T d1n7ka_          43 REASDYGFRCAVLT----PVY------------TVKISG---LAEKLGVKLC----SVIGFPLG-QAPLEVKLVEAQTVL   98 (234)
T ss_dssp             HHHHHHTCSEEEEC----HHH------------HHHHHH---HHHHHTCCEE----EEESTTTC-CSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEC----cHh------------HHHHHH---HhhcCCCceE----EEEecCCC-CCcHHHHHHHHHHHH
Confidence            45667788766664    211            222333   3344466654    44677865 455665555677888


Q ss_pred             hCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh---cCC-ce--EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 014369          288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPV-EK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  361 (426)
Q Consensus       288 ~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~---~p~-~~--i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  361 (426)
                      +.||++|-+.=-.|.. .+.+.+.+..+.+.   .+. ++  |+....++--.. .-+..++++||+.|-+| .|.+.  
T Consensus        99 ~~GAdEID~Vin~~~~-~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~-~a~~~a~~aGadFVKTS-TG~~~--  173 (234)
T d1n7ka_          99 EAGATELDVVPHLSLG-PEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLS-LLVDSSRRAGADIVKTS-TGVYT--  173 (234)
T ss_dssp             HHTCCEEEECCCGGGC-HHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHH-HHHHHHHHTTCSEEESC-CSSSC--
T ss_pred             HcCCCeEEEEechhhh-hhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHH-HHHHHHHHhhhhheeec-ccccC--
Confidence            8999999887555553 44444434443332   221 12  333333433333 34556889999999988 55443  


Q ss_pred             CCCCCCCcccHHHHHHHHH
Q 014369          362 YAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       362 ~a~graGNa~lEevv~~L~  380 (426)
                            +++.+++++.+++
T Consensus       174 ------~gat~~~~~~l~~  186 (234)
T d1n7ka_         174 ------KGGDPVTVFRLAS  186 (234)
T ss_dssp             ------CCCSHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHH
Confidence                  2234566665554

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=86.59  E-value=1  Score=41.87  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEcCCCCCCCHHHHHHHHHHHHHhcCCc
Q 014369          244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVE  322 (426)
Q Consensus       244 ~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad-~I~l~DT~G~~~P~~v~~li~~l~~~~p~~  322 (426)
                      ++++.+.|++.|+-|-+     |.     -++.+.+..+++++.+.... +|.+.-...-..+..+..++..+.+... +
T Consensus         5 ~k~il~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~a~~~~-v   73 (305)
T d1rvga_           5 GLEILKKAREEGYGVGA-----FN-----VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEAR-V   73 (305)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCS-S
T ss_pred             HHHHHHHHHHCCeEEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEECCccHHhHccHHHHHHHHHHHhccC-C
Confidence            45778889999987752     32     14678999999999999877 4455433333344455555555555544 4


Q ss_pred             eEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 014369          323 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  358 (426)
Q Consensus       323 ~i~~H~HNd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  358 (426)
                      |+.+|.  |.|.-......|+++|.+  .+|+|-..+-
T Consensus        74 pv~lHl--DH~~~~e~i~~ai~~GftSVMiDgS~l~~e  109 (305)
T d1rvga_          74 PVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFE  109 (305)
T ss_dssp             CEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHH
T ss_pred             cEEEee--hhccChhhhHHHHhcCCceEEEcCccccHH
Confidence            677665  557778999999999998  6788865443

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=12  Score=34.40  Aligned_cols=145  Identities=14%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             HHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhc--CCCcEE-EEe--CC--------hhhHHHHHHcCCCEE
Q 014369          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLP-VLT--PN--------LKGFEAAIAAGAKEV  218 (426)
Q Consensus       152 ~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~--~~~~l~-~l~--~~--------~~di~~a~~~Gv~~V  218 (426)
                      +.++.|.+.|||.|=+=.+         .+..+...++..+  .+..+. .++  .+        .+.+..+.+.+++.+
T Consensus       133 ~q~~~l~~~gvD~il~ETm---------~~~~Ea~~a~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~  203 (361)
T d1lt7a_         133 QQLEVFMKKNVDFLIAEYF---------EHVEEAVWAVETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASII  203 (361)
T ss_dssp             HHHHHHHHTTCSEEEECCC---------SCHHHHHHHHHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhhccchhhhHHH---------hhHHHHHHHHHHHhhccceEEEEEEEcCCCcccCCCcHHHHHHHHhcccchh
Confidence            3667788999998766432         2334444444322  222222 222  11        123445567899988


Q ss_pred             EEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc--EEEEEEeeecCCCCC-----------------CCCHHHH
Q 014369          219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP--VRGYVSCVVGCPVEG-----------------AIPPSKV  279 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~--v~~~v~~~fg~pd~~-----------------r~~~~~l  279 (426)
                      .+.+...+.+..        ..++.+.+..   ...+..  +.++-. .+..|+++                 ..+++++
T Consensus       204 g~nc~~~p~~~~--------~~i~~l~~~~---~~~~~~~~~~~~p~-~~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~  271 (361)
T d1lt7a_         204 GVNCHFDPTISL--------KTVKLMKEGL---EAAQLKAHLMSQPL-AYHTPDANKQGFIDLPEFPFGLEPRVATRWDI  271 (361)
T ss_dssp             EEESSSCHHHHH--------HHHHHHHHHH---HHTTCCCEEEEECC-SBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHH
T ss_pred             hhccccchHhHH--------HHHHHHHHhh---hhhcccceeeeccc-cccCCCCCccccCCCCCCcCCcccccCCHHHH
Confidence            887766553221        2233333322   233333  221111 11122221                 2357788


Q ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC
Q 014369          280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  320 (426)
Q Consensus       280 ~~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p  320 (426)
                      .++++.+.+.|+..|  .==-| .+|+.++.|.+.|+..-|
T Consensus       272 ~~~a~~~~~~Ga~iI--GGCCG-ttP~HI~~la~~l~~~~~  309 (361)
T d1lt7a_         272 QKYAREAYNLGVRYI--GGCCG-FEPYHIRAIAEELAPERG  309 (361)
T ss_dssp             HHHHHHHHHHTCCEE--CCCTT-CCHHHHHHHHHHTHHHHS
T ss_pred             HHHHHHHHHCCCcEE--EECCC-CCHHHHHHHHHHHhhhcC
Confidence            999999999999875  22233 389999999999977544

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=4.6  Score=33.41  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHh-cCCCcEEEE---eCChh-hHHHHHHcCCCEEE
Q 014369          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVL---TPNLK-GFEAAIAAGAKEVA  219 (426)
Q Consensus       145 f~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~-~~~~~l~~l---~~~~~-di~~a~~~Gv~~V~  219 (426)
                      .+.++-+++++.+.. +|+.+++|++...      ..-.+.++.+++ .++..+...   ..... -.+.+.++|+|.+.
T Consensus        11 ~~~~~~~~~~~~~~~-~vdiikig~~~~~------~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vt   83 (213)
T d1q6oa_          11 QTMDSAYETTRLIAE-EVDIIEVGTILCV------GEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVT   83 (213)
T ss_dssp             SSHHHHHHHHHHHGG-GCSEEEECHHHHH------HHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHhcCC-CccEEEeCeeccc------cCCHHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEE
Confidence            467788888888754 9999999975321      011234444543 344443321   12222 34567789999998


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--  297 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~--  297 (426)
                      +.....+               +.+..+++.++++|..+.+.+.        +..+.+.    .+.+.+.+++.+.+.  
T Consensus        84 vh~~~g~---------------~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~  136 (213)
T d1q6oa_          84 VICCADI---------------NTAKGALDVAKEFNGDVQIELT--------GYWTWEQ----AQQWRDAGIGQVVYHRS  136 (213)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHTTCEEEEEEC--------SCCCHHH----HHHHHHTTCCEEEEECC
T ss_pred             EeccCCc---------------hHHHHHHHHHHHcCCceecccC--------CCCCHHH----HHHHHHhHHHHHHHHHh
Confidence            8754332               2345667788899988764332        1233443    344556787765541  


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 014369          298 ---DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  350 (426)
Q Consensus       298 ---DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~V  350 (426)
                         -..|...+....+.++..+..  ..++.+    +-|.-..|.-.++++||+++
T Consensus       137 ~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~----~gGi~~~~~~~~~~~Gad~i  186 (213)
T d1q6oa_         137 RDAQAAGVAWGEADITAIKRLSDM--GFKVTV----TGGLALEDLPLFKGIPIHVF  186 (213)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHT--TCEEEE----ESSCCGGGGGGGTTSCCSEE
T ss_pred             cccCcCCeeCCHHHHHHHHHhhcc--CceEec----CCCcCcCCHHHHHHcCCCEE
Confidence               122334444444445554432  122332    23666677888999999976

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.97  E-value=1.6  Score=39.34  Aligned_cols=79  Identities=9%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHc
Q 014369          272 GAIPPSKVAYVAKELHDM-GCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM  345 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~-Gad~I~l~DT~G---~~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~a  345 (426)
                      +..|.+-+.+.++.+.+. |++.|.+.=|+|   .++.++-.++++.+++..+ ..+|-+|. +++..-++.-+..|.++
T Consensus        19 g~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~   98 (293)
T d1f74a_          19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHc
Confidence            468999999999988655 999999998887   4678888889988887774 55788888 89999999999999999


Q ss_pred             CCCEE
Q 014369          346 GISTV  350 (426)
Q Consensus       346 Ga~~V  350 (426)
                      ||+.|
T Consensus        99 Gad~i  103 (293)
T d1f74a_          99 GYDCL  103 (293)
T ss_dssp             TCSEE
T ss_pred             CCCEe
Confidence            99987

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=85.86  E-value=11  Score=33.56  Aligned_cols=212  Identities=15%  Similarity=0.120  Sum_probs=115.1

Q ss_pred             HHHHHhCCCCeEEEecCCCCCcc-ccccCHHHHHHHhHhcCCCcEEEEeCC---------------hhhHHHHHHcCCCE
Q 014369          154 IRRLVSSGLPVVEATSFVSPKWV-PQLADARDVMEAVRDLEGARLPVLTPN---------------LKGFEAAIAAGAKE  217 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~~~v~~~i~~~~~~~l~~l~~~---------------~~di~~a~~~Gv~~  217 (426)
                      +....+.|.++||+=.-....+. |.    ..+++.+++..++.+.+|.|.               .+|++.+.+.|++.
T Consensus        13 a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dG   88 (247)
T d1twda_          13 ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPG   88 (247)
T ss_dssp             HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Confidence            34457899999999432111111 21    234555554456778888752               14678888999999


Q ss_pred             EEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 014369          218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG  297 (426)
Q Consensus       218 V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~  297 (426)
                      |.+.+-.++-      ..+    .+++.++++.|+  ++++.  +=.+|   |.. .++   .+..+.+.+.|+++|-=.
T Consensus        89 vV~G~L~~dg------~iD----~~~~~~L~~~a~--~l~vT--FHRAf---D~~-~d~---~~al~~Li~lG~~rILTS  147 (247)
T d1twda_          89 LVTGVLDVDG------NVD----MPRMEKIMAAAG--PLAVT--FHRAF---DMC-ANP---LYTLNNLAELGIARVLTS  147 (247)
T ss_dssp             EEECCBCTTS------SBC----HHHHHHHHHHHT--TSEEE--ECGGG---GGC-SCH---HHHHHHHHHHTCCEEEEC
T ss_pred             EEEEEECCCC------Ccc----HHHHHHHHHHhc--ccCee--eehhh---hhh-CCH---HHHHHHHHhcCCCeEecc
Confidence            9887644331      111    456677777776  45554  33344   332 233   344577888999987632


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 014369          298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVY  377 (426)
Q Consensus       298 DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~lEevv~  377 (426)
                      -  |..+..+-.++++.+.+......|-.=+    |.-..|+-.=+++|++.+|.|-...-.-|+-.   .|..   +-+
T Consensus       148 G--g~~~a~~G~~~L~~L~~~a~~~iIm~Gg----GI~~~Ni~~l~~~g~~e~H~sa~~~~~s~~~~---~~~~---~~~  215 (247)
T d1twda_         148 G--QKSDALQGLSKIMELIAHRDAPIIMAGA----GVRAENLHHFLDAGVLEVHSSAGAWQASPMRY---RNQG---LSM  215 (247)
T ss_dssp             T--TSSSTTTTHHHHHHHHTSSSCCEEEEES----SCCTTTHHHHHHHTCSEEEECCEEEECCCCCC---CC--------
T ss_pred             C--CCCchhHHHHHHHHHHHhcCCcEEEecC----CCCHHHHHHHHHcCCCEEEECCCCcCCCccee---cCCC---ccc
Confidence            2  2333445556666666554332232222    22223444445789999999865443322222   1211   111


Q ss_pred             HHH----hCCCCCCcChhhHHHHHHHHHHH
Q 014369          378 MLS----GLGVETNVDLRKLMLAGDFINKH  403 (426)
Q Consensus       378 ~L~----~lG~~~~iDl~~L~~la~~v~~~  403 (426)
                      ...    .+.+ ...|.+++.++.+.+.+.
T Consensus       216 g~~~~~~e~~~-~~tD~~~V~~~~~~l~~~  244 (247)
T d1twda_         216 SSDEHADEYSR-YIVDGAAVAEMKGIIERH  244 (247)
T ss_dssp             --------CCE-EEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccc-cccCHHHHHHHHHHHHHh
Confidence            111    1111 247888888887777654

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.33  E-value=7  Score=32.95  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhH-hcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       151 i~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      ..-...+..+|++.+.+......  .+...+..+..+.++ ..++..+..-+.+.++.+.+.++|++.|.+.......+.
T Consensus        88 ~~~~~~~~~~gad~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~  165 (230)
T d1yxya1          88 MTEVDQLAALNIAVIAMDCTKRD--RHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS  165 (230)
T ss_dssp             HHHHHHHHTTTCSEEEEECCSSC--CTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS
T ss_pred             HHHHHHHHhcCCCEEEEeccccc--ccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccc
Confidence            45566778899999998764321  122234455555554 335555555667889999999999998866432111000


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH-
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV-  308 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v-  308 (426)
                         ......  .   ....+.++..+++|.+         +.+-.+++.+.+    +.++|||.|.+.-  .+..|..+ 
T Consensus       166 ---~~~~~~--~---~~~~~~~~~~~ipvia---------~GGI~t~~d~~~----al~~GAd~V~vGs--Ai~~p~~i~  222 (230)
T d1yxya1         166 ---RQEAGP--D---VALIEALCKAGIAVIA---------EGKIHSPEEAKK----INDLGVAGIVVGG--AITRPKEIA  222 (230)
T ss_dssp             ---CCSSSC--C---HHHHHHHHHTTCCEEE---------ESCCCSHHHHHH----HHTTCCSEEEECH--HHHCHHHHH
T ss_pred             ---cccchH--H---HHHHHHHhcCCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEECh--hhcCHHHHH
Confidence               000100  1   1223334556777652         234456777544    4479999999885  35688876 


Q ss_pred             HHHHHHH
Q 014369          309 VPMLEAV  315 (426)
Q Consensus       309 ~~li~~l  315 (426)
                      .++++.|
T Consensus       223 ~~~~~~~  229 (230)
T d1yxya1         223 ERFIEAL  229 (230)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            4445443

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=85.19  E-value=6  Score=35.57  Aligned_cols=207  Identities=13%  Similarity=0.093  Sum_probs=113.1

Q ss_pred             HHHHHhCCCCeEEEecCC--CCCcccc--ccCHHHHHHHhHhcC-CCcEEEEeC------Ch----hhHHHHHHcCCCEE
Q 014369          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP------NL----KGFEAAIAAGAKEV  218 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~------~~----~di~~a~~~Gv~~V  218 (426)
                      ++.+.++|++.|=++++.  ...++|.  +-+..++++.++++. .+.+++++-      +.    +-++...++|+.-|
T Consensus        29 Ar~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi  108 (275)
T d1s2wa_          29 ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGA  108 (275)
T ss_dssp             HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhcccee
Confidence            455567799999887542  2233442  234466777776543 244555541      22    34677788999999


Q ss_pred             EEeccCChHHHhhh-----cCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC--CCCCHHHHHHHHHHHHhCCC
Q 014369          219 AIFASASEAFSKSN-----INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAYVAKELHDMGC  291 (426)
Q Consensus       219 ~i~~~~Sd~~~~~~-----~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~--~r~~~~~l~~~~~~l~~~Ga  291 (426)
                      +|-..+.+.-.-+.     .=.+.++...+++..++..++..+-+.+   .+    |+  .....++..+-+++..++||
T Consensus       109 ~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~A---Rt----Da~~~~~gl~eai~R~~aY~eAGA  181 (275)
T d1s2wa_         109 CLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVA---RV----EAFIAGWGLDEALKRAEAYRNAGA  181 (275)
T ss_dssp             EEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEE---EE----CTTTTTCCHHHHHHHHHHHHHTTC
T ss_pred             EeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEe---cc----hhhhhcCCHHHHHHHHHHHHhcCC
Confidence            99987765321111     1235777777777666544444443321   11    22  12357788888888999999


Q ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       292 d~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      |.|.+.=.  .-.|+....+........   ++-+.. ...|.-...  .--+.|+++|-.....+        ++-..+
T Consensus       182 D~vf~~~~--~~~~~~~~~~~~~~~~~~---pl~~~~-~~~~~~~~~--eL~~lGv~~v~~g~~~~--------~aa~~a  245 (275)
T d1s2wa_         182 DAILMHSK--KADPSDIEAFMKAWNNQG---PVVIVP-TKYYKTPTD--HFRDMGVSMVIWANHNL--------RASVSA  245 (275)
T ss_dssp             SEEEECCC--SSSSHHHHHHHHHHTTCS---CEEECC-STTTTSCHH--HHHHHTCCEEEECSHHH--------HHHHHH
T ss_pred             Ceeeeccc--cCcHHHHHHHHHhhcCCC---CEEEec-ccccccHHH--HHHHcCCCEEEEchHHH--------HHHHHH
Confidence            99998322  123444444434333222   333322 223332233  45567999886554443        466677


Q ss_pred             HHHHHHHHHhCC
Q 014369          372 TEDVVYMLSGLG  383 (426)
Q Consensus       372 lEevv~~L~~lG  383 (426)
                      +++++..|..-|
T Consensus       246 ~~~~~~~l~~~g  257 (275)
T d1s2wa_         246 IQQTTKQIYDDQ  257 (275)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            777777776543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=85.02  E-value=12  Score=32.78  Aligned_cols=208  Identities=16%  Similarity=0.136  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhCCCCeEEEecCC-CCCccccccCHHHHHHHhHhcCCCcEEE--EeCChhhHHHHHHcCCCEEEEecc
Q 014369          147 TGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFAS  223 (426)
Q Consensus       147 ~~~ki~I~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~~~~di~~a~~~Gv~~V~i~~~  223 (426)
                      ..+-+++++.+.+.|++.|-+-=.. .....   ....++++.+.....+.++.  ..++.++++.++++|++.|.+-..
T Consensus        29 ~gdP~~~a~~~~~~g~dei~ivDld~~~~~~---~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~  105 (253)
T d1thfd_          29 SGDPVELGKFYSEIGIDELVFLDITASVEKR---KTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTA  105 (253)
T ss_dssp             TTCHHHHHHHHHHTTCCEEEEEESSCSSSHH---HHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeecccccCc---ccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChH
Confidence            3446889999999999988774221 11100   01223344443333444443  458999999999999999988522


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCc-EEEEEEeeec------CCCCC-CCCHHHHHHHHHHHHhCCCCEEE
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVG------CPVEG-AIPPSKVAYVAKELHDMGCFEIS  295 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~-v~~~v~~~fg------~pd~~-r~~~~~l~~~~~~l~~~Gad~I~  295 (426)
                                      +++....+-+.++..|-. +.+.+-.-..      .-... ......+.++.+.+.++|+.+|.
T Consensus       106 ----------------~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii  169 (253)
T d1thfd_         106 ----------------AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEIL  169 (253)
T ss_dssp             ----------------HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEE
T ss_pred             ----------------HhhChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEE
Confidence                            122222233334445533 2222211000      00001 11122355677888899999887


Q ss_pred             EcC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcH-HHHHHHHHHcCCCEE-eecccCCCCCCCCCCCCCccc
Q 014369          296 LGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV-DCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       296 l~D--T~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA-~ANaLaAl~aGa~~V-D~Sv~GlGecP~a~graGNa~  371 (426)
                      +-|  ..|.+.-..+ ++++.+++..+. ++-+.+    |.. ......+..+|++.| =++..          -.|..+
T Consensus       170 ~tdI~~dGt~~G~d~-~ll~~i~~~~~~-pvi~~G----Gv~s~~di~~l~~~g~~gvivgsal----------~~~~~~  233 (253)
T d1thfd_         170 LTSIDRDGTKSGYDT-EMIRFVRPLTTL-PIIASG----GAGKMEHFLEAFLAGADAALAASVF----------HFREID  233 (253)
T ss_dssp             EEETTTTTSCSCCCH-HHHHHHGGGCCS-CEEEES----CCCSHHHHHHHHHTTCSEEEESHHH----------HTTCSC
T ss_pred             EEEecccCccCCccc-cccccccccccc-eEEEec----CCCCHHHHHHHHHCCCCEEEEchHH----------HcCCCC
Confidence            754  4476665555 356667665443 565544    333 234555667887754 23332          246688


Q ss_pred             HHHHHHHHHhCCCCCCcC
Q 014369          372 TEDVVYMLSGLGVETNVD  389 (426)
Q Consensus       372 lEevv~~L~~lG~~~~iD  389 (426)
                      ++++-..|+..|++..+|
T Consensus       234 ~~~~k~~l~~~~i~vr~~  251 (253)
T d1thfd_         234 VRELKEYLKKHGVNVRLE  251 (253)
T ss_dssp             HHHHHHHHHHTTCCCCCT
T ss_pred             HHHHHHHHHHCCCcEeCC
Confidence            999999999888875554

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.68  E-value=3.6  Score=37.06  Aligned_cols=148  Identities=14%  Similarity=0.140  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHc--CCCEEEEecc
Q 014369          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAA--GAKEVAIFAS  223 (426)
Q Consensus       146 ~~~~ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~--Gv~~V~i~~~  223 (426)
                      +.+..++.|+...+.|.+.|++.......  .....-+.+.+.++...++.++.=+.+.+-+++|++.  |.+.|.= ++
T Consensus        38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~~--~e~~~m~~li~~l~~~~d~PlsIDT~~~~v~eaaLk~~~G~~iINs-is  114 (260)
T d3bofa1          38 NEEIVIKEAKTQVEKGAEVLDVNFGIESQ--IDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNS-AK  114 (260)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEECSSGGG--SCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEE-EE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCCchh--hhHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHhcCcceEee-cc
Confidence            45777899999999999999997543211  0111123333444444556655556778888999987  8776652 22


Q ss_pred             CChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHH----HHHHHHHHHhCCC-CEEEEcC
Q 014369          224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK----VAYVAKELHDMGC-FEISLGD  298 (426)
Q Consensus       224 ~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~----l~~~~~~l~~~Ga-d~I~l~D  298 (426)
                      .-+               ++...++..++++|..+.+  ++ .. + ...-+.+.    +.++.+.+.+.|. +.|.+ |
T Consensus       115 ~e~---------------~~~~~~~~l~~~yga~vI~--l~-~d-~-g~p~~~~er~~~~~~~~~~~~~~g~~e~ii~-D  173 (260)
T d3bofa1         115 VDE---------------EELEMKINLLKKYGGTLIV--LL-MG-K-DVPKSFEERKEYFEKALKILERHDFSDRVIF-D  173 (260)
T ss_dssp             SCH---------------HHHHHHHHHHHHHCCEEEE--ES-CS-S-SCCCSHHHHHHHHHHHHHHHHHTTCGGGEEE-E
T ss_pred             ccc---------------chHHHHHHHHHhcCCCEEE--Ee-cC-C-cccccHHHHHHHHHHHHHHHHhcCCcHhhee-c
Confidence            211               2345677889999988763  22 21 1 12233333    3344445556674 45666 6


Q ss_pred             C----CCC-CCHHHHHHHHHHHHH
Q 014369          299 T----IGV-GTPGTVVPMLEAVMA  317 (426)
Q Consensus       299 T----~G~-~~P~~v~~li~~l~~  317 (426)
                      -    +|. -.+.++-+.++.+++
T Consensus       174 Pli~~~~t~~~~~~~l~~i~~i~~  197 (260)
T d3bofa1         174 PGVLPLGAEGKPVEVLKTIEFISS  197 (260)
T ss_dssp             CCCCCGGGTCCHHHHHHHHHHHHH
T ss_pred             ccceeccchHHHHHHHHHHHHHHh
Confidence            1    121 123445555555554

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=84.68  E-value=4  Score=37.11  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=118.2

Q ss_pred             HHHHHhCCCCeEEEecC-C--CCCcccc--ccCHHHHHHHhHhcCC-CcEEEEeC------C-h----hhHHHHHHcCCC
Q 014369          154 IRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTP------N-L----KGFEAAIAAGAK  216 (426)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------~-~----~di~~a~~~Gv~  216 (426)
                      ++...++|++.+=+++. +  +..++|.  +-...++++.++++.+ +.+.+++-      + .    +-++...++|+.
T Consensus        29 A~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGva  108 (289)
T d1muma_          29 ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAA  108 (289)
T ss_dssp             HHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCC
Confidence            45678899999988643 1  2334563  2456777777776532 34444431      1 2    346777889999


Q ss_pred             EEEEeccCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-CCCHHHHHHHHHHHHhCCCC
Q 014369          217 EVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGCF  292 (426)
Q Consensus       217 ~V~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r~~~~~l~~~~~~l~~~Gad  292 (426)
                      -|+|-..+.+.   |...+.=.+.++++.+++.+++..++-.+-+.+   .+    |+. ....+...+-+++..++|||
T Consensus       109 gi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiA---RT----Da~~~~g~~eAi~R~~aY~eAGAD  181 (289)
T d1muma_         109 GLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMA---RT----DALAVEGLDAAIERAQAYVEAGAE  181 (289)
T ss_dssp             EEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEE---EE----CCHHHHCHHHHHHHHHHHHHTTCS
T ss_pred             EEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhhee---cc----ccccccCHHHHHHHHHHhhhcCCc
Confidence            99999876542   212222247888888887666544333343321   11    110 11356666667778899999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCc-HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc
Q 014369          293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVA  371 (426)
Q Consensus       293 ~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~Gl-A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNa~  371 (426)
                      .|.+.   |.-.++++..+.+.+    +. |+-+..=. +|. .+-+.-.--++|+++|-.....+        ++-..+
T Consensus       182 ~vf~~---~~~~~~~~~~~~~~~----~~-Pl~~~~~~-~~~~p~~s~~eL~~~Gv~~v~~~~~~~--------~aa~~a  244 (289)
T d1muma_         182 MLFPE---AITELAMYRQFADAV----QV-PILANITE-FGATPLFTTDELRSAHVAMALYPLSAF--------RAMNRA  244 (289)
T ss_dssp             EEEET---TCCCHHHHHHHHHHH----CS-CBEEECCS-SSSSCCCCHHHHHHTTCSEEEESSHHH--------HHHHHH
T ss_pred             EEEec---CCCCHHHHHHHHHhc----CC-CEEEeecC-cCCCccchHHHHHHhccceEEechHHH--------HHHHHH
Confidence            99875   455677666655544    32 23221111 111 11134466688999875544433        445566


Q ss_pred             HHHHHHHHHhCC
Q 014369          372 TEDVVYMLSGLG  383 (426)
Q Consensus       372 lEevv~~L~~lG  383 (426)
                      +++++..|+.-|
T Consensus       245 ~~~~~~~l~~~G  256 (289)
T d1muma_         245 AEHVYNVLRQEG  256 (289)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            777777776544

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=84.27  E-value=8.7  Score=30.74  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhCCCCeEEEecCCCCCccccccCHHHHHHHhHhcCCCcEEEEeCChhhHHHHHHcCCCEEEEeccCChHHH
Q 014369          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS  229 (426)
Q Consensus       150 ki~I~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~~~~di~~a~~~Gv~~V~i~~~~Sd~~~  229 (426)
                      +.-++..|...|++++-.|..++         .++++                     +.+.+.+.+.|.+.......  
T Consensus        20 ~~mva~~l~~~G~~V~~LG~~~p---------~e~iv---------------------~a~~~~~~d~v~lS~~~~~~--   67 (137)
T d1ccwa_          20 NKILDHAFTNAGFNVVNIGVLSP---------QELFI---------------------KAAIETKADAILVSSLYGQG--   67 (137)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEC---------HHHHH---------------------HHHHHHTCSEEEEEECSSTH--
T ss_pred             HHHHHHHHHHCCCeEEecccccC---------HHHHH---------------------HHHHhcCCCEEEEeeccccc--
Confidence            45677788888888888886432         23333                     45666778888887654431  


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHH
Q 014369          230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV  308 (426)
Q Consensus       230 ~~~~~~s~~e~l~~~~~~v~~Ak~~G~-~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~~~P~~v  308 (426)
                                 +..+.++++..++.+. .+-+.+-   |.......++..   ..+.+.++|++.|+-++|    .|.++
T Consensus        68 -----------~~~~~~~~~~l~~~~~~~i~iivG---G~~~~~~~~~~~---~~~~l~~~Gv~~if~~~t----~~~~~  126 (137)
T d1ccwa_          68 -----------EIDCKGLRQKCDEAGLEGILLYVG---GNIVVGKQHWPD---VEKRFKDMGYDRVYAPGT----PPEVG  126 (137)
T ss_dssp             -----------HHHHTTHHHHHHHTTCTTCEEEEE---ESCSSSSCCHHH---HHHHHHHTTCSEECCTTC----CHHHH
T ss_pred             -----------hHHHHHHHHHHHHhccCCCEEEEe---CCcCCCccccHH---HHHHHHHcCCCEEECCCC----CHHHH
Confidence                       3445566666666654 2322121   222222233333   455677899999988876    45555


Q ss_pred             HHHHH
Q 014369          309 VPMLE  313 (426)
Q Consensus       309 ~~li~  313 (426)
                      .+.++
T Consensus       127 ~~~l~  131 (137)
T d1ccwa_         127 IADLK  131 (137)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.20  E-value=8.8  Score=35.18  Aligned_cols=124  Identities=12%  Similarity=-0.015  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecC-------------C--CC----C-----CCCHH-------HHHHHH
Q 014369          235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-------------P--VE----G-----AIPPS-------KVAYVA  283 (426)
Q Consensus       235 ~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~-------------p--d~----~-----r~~~~-------~l~~~~  283 (426)
                      ...++.++..+++++.++++|-.+.+.+.+. |-             |  ..    .     ..+.+       .+.+.+
T Consensus        77 ~~~d~~i~~~~~l~~~vh~~g~~i~~Ql~H~-Gr~~~~~~~~~~~~~~s~~~~~~~~~~~~~~mt~~eI~~ii~~f~~aA  155 (340)
T d1djqa1          77 IWDEGDVRNLKAMTDEVHKYGALAGVELWYG-GAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAA  155 (340)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHH
T ss_pred             ccceeecchhhhhHHHhhcccceeeEeeeec-cccccccccCCcccccccccccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence            3446778889999999999999888777543 10             0  00    0     01222       445567


Q ss_pred             HHHHhCCCCEEEEcCCCCCCC------------------H-H---HHHHHHHHHHHhcC-CceEEEEe--C-------CC
Q 014369          284 KELHDMGCFEISLGDTIGVGT------------------P-G---TVVPMLEAVMAVVP-VEKLAVHL--H-------DT  331 (426)
Q Consensus       284 ~~l~~~Gad~I~l~DT~G~~~------------------P-~---~v~~li~~l~~~~p-~~~i~~H~--H-------Nd  331 (426)
                      +.+.++|.|.|.|-=.-|++.                  + +   -+.++++++|+.++ +.+|++.+  .       .+
T Consensus       156 ~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~  235 (340)
T d1djqa1         156 KRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIE  235 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCC
T ss_pred             HHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCc
Confidence            788889999888854444432                  2 2   24678888888885 44555542  1       12


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          332 YGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       332 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      ....+.-.....+.|++.++.|..++.+
T Consensus       236 ~e~~~~~~~~l~~~~vd~~~vs~g~~~~  263 (340)
T d1djqa1         236 AEVDGQKFVEMADSLVDMWDITIGDIAE  263 (340)
T ss_dssp             TTTHHHHHHHHHTTTCSEEEEEESCSTT
T ss_pred             hhhhHHHHHHHHhhccceeeeeeccccc
Confidence            2334444556668999999999987765

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.84  E-value=4.3  Score=34.07  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=58.2

Q ss_pred             HHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 014369          281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  359 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  359 (426)
                      +..+.+.++|++.|.+....+...-+.+.+.++..++..+...+..+.++     ...++.+.++|++.|..+..|.+.
T Consensus        79 ~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t-----~~~a~~~~~~g~d~i~~~~~~~~~  152 (222)
T d1y0ea_          79 KEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYTS  152 (222)
T ss_dssp             HHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSST
T ss_pred             HHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCC-----HHHHHHHHHcCCCeEEEeccCCcc
Confidence            34556677899999999998887778888999999988876555556555     567888999999999877666554

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=83.31  E-value=5.4  Score=37.13  Aligned_cols=126  Identities=12%  Similarity=0.028  Sum_probs=68.4

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCC-C--------CCH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-A--------IPP  276 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~-r--------~~~  276 (426)
                      .++...++|+..|||.+-..+.--....-..-...++++.+++++|+++|+.|...+-..-.-.+.+ .        .+.
T Consensus        43 ~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~  122 (387)
T d1ur4a_          43 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNF  122 (387)
T ss_dssp             HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCH
T ss_pred             HHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCCCCCCchhhhccch
Confidence            4788889999999987632211000000000012378888999999999999987775311000100 0        011


Q ss_pred             --------HHHHHHHHHHHhCCCCE--EEEcCC--CCCC---CHHHHHHH----HHHHHHhcCCceEEEEeCCC
Q 014369          277 --------SKVAYVAKELHDMGCFE--ISLGDT--IGVG---TPGTVVPM----LEAVMAVVPVEKLAVHLHDT  331 (426)
Q Consensus       277 --------~~l~~~~~~l~~~Gad~--I~l~DT--~G~~---~P~~v~~l----i~~l~~~~p~~~i~~H~HNd  331 (426)
                              ++....++.+...|+..  +.|..=  .|.+   ....+.++    ++++|+.-|...+.+|..+-
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~  196 (387)
T d1ur4a_         123 EDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNP  196 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCT
T ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCCcCccCcCCHHHHHHHHHHHHHHHHhcCCCceEEEeccCc
Confidence                    13334555666677653  444321  1222   34554444    55555556777788887764

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=83.28  E-value=3  Score=37.20  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+.+.+.++.+.+.|++.|.+.-|+|=   +++++-.++++.+.+... ..+|-+++ ++...-++..+..|.++|
T Consensus        19 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   98 (292)
T d1xkya1          19 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG   98 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             cCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999884   678888899999888763 44566654 566677888899999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      |+.|-..      .||-..    ++-++++.+++
T Consensus        99 ad~ilv~------pP~~~~----~s~~~i~~~~~  122 (292)
T d1xkya1          99 VDAVMLV------APYYNK----PSQEGMYQHFK  122 (292)
T ss_dssp             CSEEEEE------CCCSSC----CCHHHHHHHHH
T ss_pred             CCEEEEC------CCCCCC----CCHHHHHHHHH
Confidence            9988664      343222    34466666665

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=83.14  E-value=1.3  Score=39.97  Aligned_cols=99  Identities=10%  Similarity=0.030  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhc-CCceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVV-PVEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~-p~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.+.++.+.+.|++.|.+.-|+|=   ++.++-.++++.+.+.. +..++-+|. +++.-.++..+..|.++|
T Consensus        17 ~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~G   96 (292)
T d2a6na1          17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcC
Confidence            4689999999999999999999999999994   66777788888887776 345777776 777778888888889999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  380 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~  380 (426)
                      ++.+=..-      ||-    ..++-++++.+++
T Consensus        97 ad~~~~~p------P~~----~~~~~~~i~~~f~  120 (292)
T d2a6na1          97 IVGCLTVT------PYY----NRPSQEGLYQHFK  120 (292)
T ss_dssp             CCEEEEEC------CCS----SCCCHHHHHHHHH
T ss_pred             CcceeccC------CCC----CCCCHHHHHHHHH
Confidence            99765543      221    1245567777666

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=82.69  E-value=0.82  Score=41.20  Aligned_cols=152  Identities=16%  Similarity=0.090  Sum_probs=82.1

Q ss_pred             hHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 014369          206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  285 (426)
Q Consensus       206 di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~  285 (426)
                      -++.|.+.|.++|...+..-+        -+.++..+++.+++++|+++|++|.+.|+-..=...  ..+.+    -.+.
T Consensus        22 yi~~a~~~Gf~~iFTSL~~~e--------~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~l--g~s~~----dl~~   87 (244)
T d1x7fa2          22 YISAAARHGFSRIFTCLLSVN--------RPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQL--GISYS----DLSF   87 (244)
T ss_dssp             HHHHHHTTTEEEEEEEECCC----------------HHHHHHHHHHHHTTCEEEEEECTTCC--------CC----CTHH
T ss_pred             HHHHHHHCCCCEEEecCccCC--------CCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHh--CCCHH----HHHH
Confidence            367888889777666542222        234567888999999999999999877752210000  01111    1345


Q ss_pred             HHhCCCCEEEEcCCCCCCCHHHHH----------------HHHHHHHHhcCCc-eEEEEeCC-----CcCcHHHHHHHH-
Q 014369          286 LHDMGCFEISLGDTIGVGTPGTVV----------------PMLEAVMAVVPVE-KLAVHLHD-----TYGQSLPNILIS-  342 (426)
Q Consensus       286 l~~~Gad~I~l~DT~G~~~P~~v~----------------~li~~l~~~~p~~-~i~~H~HN-----d~GlA~ANaLaA-  342 (426)
                      +.++|++.|+|=+-.-.....++.                +.+..+...-|+. .|.. |||     ..||+..--+.- 
T Consensus        88 ~~~lGi~glRlD~Gf~~~e~a~ms~n~~~l~I~LNaSt~t~~l~~l~~~~~n~~~l~a-cHNFYPr~~TGLs~~~f~~~n  166 (244)
T d1x7fa2          88 FAELGADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSNDIAYLENILSHQANKSALIG-CHNFYPQKFTGLPYDYFIRCS  166 (244)
T ss_dssp             HHHHTCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCCGGGEEE-ECCCBCSTTCSBCHHHHHHHH
T ss_pred             HHHCCCCEEEEcCCCChHHHHHHhcCCcCCEEEEECCcCHHHHHHHHHcCCChhheEE-eeccCCCCCCCCCHHHHHHHH
Confidence            667899999998876433333321                2355555544532 3333 666     458877544433 


Q ss_pred             ---HHcCCCEEeecccCCCCCCCCCC--CCCcccHHH
Q 014369          343 ---LQMGISTVDCSVAGLGGCPYAKG--ASGNVATED  374 (426)
Q Consensus       343 ---l~aGa~~VD~Sv~GlGecP~a~g--raGNa~lEe  374 (426)
                         -+.|.. +-+=|.|-+.+ ..|+  -.|.+.+|.
T Consensus       167 ~~~k~~gi~-t~AFI~g~~~~-rGPwpl~eGLPTLE~  201 (244)
T d1x7fa2         167 ERFKKHGIR-SAAFITSHVAN-IGPWDINDGLCTLEE  201 (244)
T ss_dssp             HHHHHTTCC-CEEEECCSSCC-BCSSSCCSCCBSBGG
T ss_pred             HHHHHcCCC-EEEEEeCCccc-CCCccccCCCCchHH
Confidence               367877 34556665541 2221  245565553

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.64  E-value=1.3  Score=39.93  Aligned_cols=152  Identities=16%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             HHHHHhCC--CCeEEEecCCCCCccccccCHHHHHHHhHhcC--CCcEEE--------EeCCh--hhHHHHHHcCCCEEE
Q 014369          154 IRRLVSSG--LPVVEATSFVSPKWVPQLADARDVMEAVRDLE--GARLPV--------LTPNL--KGFEAAIAAGAKEVA  219 (426)
Q Consensus       154 ~~~L~~~G--v~~IEvG~~~s~~~~p~~~D~~~v~~~i~~~~--~~~l~~--------l~~~~--~di~~a~~~Gv~~V~  219 (426)
                      -..|..+|  ||.+=+|+..+.     +.+.+-+.+.++...  ++.+..        +.++.  +-++.+.+.|.+.|-
T Consensus        29 eD~Le~ag~yID~~K~g~Gt~~-----l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg~~~~y~~~~~~lGf~~iE  103 (251)
T d1qwga_          29 EDYLKVCGDYIDFVKFGWGTSA-----VIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVE  103 (251)
T ss_dssp             HHHHHHHGGGCSEEEECTTGGG-----GSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHhhhhheeEEEecCceee-----ecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcCCHHHHHHHHHHcCCCEEE
Confidence            33445555  888888865331     112233445554322  333221        11232  346778889999999


Q ss_pred             EeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCC---CCCCHHHHHHHHHHHHhCCCCEEEE
Q 014369          220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAKELHDMGCFEISL  296 (426)
Q Consensus       220 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~---~r~~~~~l~~~~~~l~~~Gad~I~l  296 (426)
                      |....-++        +    .+.-.++++.|++.|++|-.-    +|....   ...+++.+.+.++...++||+.|.+
T Consensus       104 iSdg~~~i--------~----~~~~~~~I~~~~~~G~~V~~E----vG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~Vii  167 (251)
T d1qwga_         104 ISDGSSDI--------S----LEERNNAIKRAKDNGFMVLTE----VGKKMPDKDKQLTIDDRIKLINFDLDAGADYVII  167 (251)
T ss_dssp             ECCSSSCC--------C----HHHHHHHHHHHHHTTCEEEEE----ECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             EcCCccCC--------C----HHHHHHHHHHHHhCCCEEeec----ccCCCCCCccccCHHHHHHHHHHHHHCCCceeEe
Confidence            97543332        2    233458899999999988643    443321   2467899999999999999998877


Q ss_pred             cC-----CCCCCCHHH--HHHHHHHHHHhcCCceEEE
Q 014369          297 GD-----TIGVGTPGT--VVPMLEAVMAVVPVEKLAV  326 (426)
Q Consensus       297 ~D-----T~G~~~P~~--v~~li~~l~~~~p~~~i~~  326 (426)
                      -=     ++|+..+..  -..++..+.+.++..+|-|
T Consensus       168 EarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiif  204 (251)
T d1qwga_         168 EGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIF  204 (251)
T ss_dssp             CCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEE
T ss_pred             ehhhcCCccceecCCCChhHHHHHHHHHhCCcccEEE
Confidence            41     456666532  1356666667776545666

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.11  E-value=10  Score=33.52  Aligned_cols=14  Identities=21%  Similarity=0.083  Sum_probs=7.8

Q ss_pred             HHHHHHHHhcCCcE
Q 014369          245 RAVAHAAKVLSIPV  258 (426)
Q Consensus       245 ~~~v~~Ak~~G~~v  258 (426)
                      .+.++.|++.|...
T Consensus        81 i~~a~~a~~~Ga~~   94 (293)
T d1w3ia_          81 IRLAKLSKDFDIVG   94 (293)
T ss_dssp             HHHHHHGGGSCCSE
T ss_pred             hhhhhhhhhhcccc
Confidence            34555666666553

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.97  E-value=4.8  Score=35.81  Aligned_cols=125  Identities=13%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhcC-CceEEEEe-CCCcCcHHHHHHHHHHcC
Q 014369          272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  346 (426)
Q Consensus       272 ~r~~~~~l~~~~~~l~~~Gad~I~l~DT~G~---~~P~~v~~li~~l~~~~p-~~~i~~H~-HNd~GlA~ANaLaAl~aG  346 (426)
                      +..|.+-+.+.++.+.+.|++.|.++-|.|=   +++++-.++++.+.+... ..++-+|+ +++.--++..+..|.++|
T Consensus        17 ~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~G   96 (295)
T d1o5ka_          17 GELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG   96 (295)
T ss_dssp             TEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999999884   567888888888887764 45677776 466778899999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHh-----------CCCC----CCcChhhHHHHHHHHHHHhCC
Q 014369          347 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-----------LGVE----TNVDLRKLMLAGDFINKHLGR  406 (426)
Q Consensus       347 a~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~-----------lG~~----~~iDl~~L~~la~~v~~~~g~  406 (426)
                      |+.|-+.-      ||-    ..++-++++.+++.           +++.    ..+..+.+.++.+.+.++.|+
T Consensus        97 ad~v~v~p------P~y----~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~i  161 (295)
T d1o5ka_          97 ANGVLVVT------PYY----NKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI  161 (295)
T ss_dssp             CSEEEEEC------CCS----SCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred             CCEEEEeC------CCC----CCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhhcccccce
Confidence            99885532      221    12455677777663           1111    234556666665555544443

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=81.61  E-value=0.55  Score=42.19  Aligned_cols=61  Identities=13%  Similarity=-0.101  Sum_probs=43.5

Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEE
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  263 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~  263 (426)
                      +.+|++...+.|+..|||.+.-....-..+...-.+..++++.++|+.|+++|+.|.+.+-
T Consensus        22 ~e~d~~~l~~~G~n~vRlpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~~~~~gi~vildlH   82 (325)
T d1vjza_          22 KEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLH   82 (325)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEecccHHHccCCCCCCccCHHHHHHHHHHHHHHHHcCCcEEEeec
Confidence            4678999999999999998753221111111222345789999999999999999986553

>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]

Probab=81.44  E-value=1.2  Score=41.20  Aligned_cols=55  Identities=13%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCCCEEEEcCCCCCCCH-HH--------HHHHHHHHHHhcCCceEEEEeCCCc
Q 014369          278 KVAYVAKELHDMGCFEISLGDTIGVGTP-GT--------VVPMLEAVMAVVPVEKLAVHLHDTY  332 (426)
Q Consensus       278 ~l~~~~~~l~~~Gad~I~l~DT~G~~~P-~~--------v~~li~~l~~~~p~~~i~~H~HNd~  332 (426)
                      .+.++++...++|++.|.+.|+.+...+ ..        +.++++.+++..+..++..|++++.
T Consensus       184 ~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  247 (343)
T d1j93a_         184 SMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSG  247 (343)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCT
T ss_pred             HHHHHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCceeeeccccc
Confidence            3445666777899999999999887745 33        3445666666667667888998764

>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Thioglucosidase
species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]

Probab=81.22  E-value=1.3  Score=42.97  Aligned_cols=94  Identities=12%  Similarity=-0.013  Sum_probs=67.3

Q ss_pred             hhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCC--------CCCCC
Q 014369          204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--------EGAIP  275 (426)
Q Consensus       204 ~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd--------~~r~~  275 (426)
                      .+||+.+.+.|++..|+.++=|-++-+-..+.=-++.++.+.++|+.++++|++..+++-. |..|.        ..+-.
T Consensus        60 ~eDi~l~~~lG~~~yRfSi~WsRI~P~G~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H-fd~P~~l~~~GGW~~~~~  138 (462)
T d1wcga1          60 KEDVAIIKDLNLKFYRFSISWARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYH-WDLPQYLQDLGGWVNPIM  138 (462)
T ss_dssp             HHHHHHHHHHTCSEEEEECCHHHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTGGGSTTH
T ss_pred             HHHHHHHHHhCCCEEEeeCcHHHcccCCCCCCcCHHHHHHHHHHHHHHHhcCCeeEEEecc-ccchhhhhhcCCcccHHH
Confidence            5799999999999999998766665432123344789999999999999999999988876 54443        12344


Q ss_pred             HHHHHHHHHHHHh-CC--CC-EEEEcC
Q 014369          276 PSKVAYVAKELHD-MG--CF-EISLGD  298 (426)
Q Consensus       276 ~~~l~~~~~~l~~-~G--ad-~I~l~D  298 (426)
                      ++.++++++.+.+ .|  ++ .+.+-.
T Consensus       139 v~~F~~Ya~~v~~~fgd~V~~W~T~NE  165 (462)
T d1wcga1         139 SDYFKEYARVLFTYFGDRVKWWITFNE  165 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhccccchheeeecC
Confidence            5666666766543 44  44 566554

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=80.54  E-value=3.8  Score=36.91  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             HHHHHHHhCCCCEEEEcCCCC----------CCCHHHHHHHHHHHHHhcCCceEEEEeC-----CCcCcHHHHHHHHHHc
Q 014369          281 YVAKELHDMGCFEISLGDTIG----------VGTPGTVVPMLEAVMAVVPVEKLAVHLH-----DTYGQSLPNILISLQM  345 (426)
Q Consensus       281 ~~~~~l~~~Gad~I~l~DT~G----------~~~P~~v~~li~~l~~~~p~~~i~~H~H-----Nd~GlA~ANaLaAl~a  345 (426)
                      ..++.+.++|+|.|.+.|+.|          ..+.+++....+++++..|..-+.++.-     +..-.++.|+...+++
T Consensus        26 ~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~~~~~~  105 (260)
T d1o66a_          26 SFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAA  105 (260)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHHHHHHh
Confidence            357778899999999999865          3467888888999999888755555542     3333445666667889


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHhCCC
Q 014369          346 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  384 (426)
Q Consensus       346 Ga~~VD~Sv~GlGecP~a~graGNa~lEevv~~L~~lG~  384 (426)
                      ||+.|-.              -|...+.+++..|.+.|+
T Consensus       106 gadavk~--------------eg~~~~~~~i~~l~~~gI  130 (260)
T d1o66a_         106 GAHMVKL--------------EGGVWMAETTEFLQMRGI  130 (260)
T ss_dssp             TCSEEEE--------------ECSGGGHHHHHHHHHTTC
T ss_pred             hhhhccc--------------cchhhhhHHHHHHHHcCC
Confidence            9997754              234555667777765444

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.19  E-value=20  Score=32.72  Aligned_cols=90  Identities=11%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             HHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 014369          207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  286 (426)
Q Consensus       207 i~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~~~fg~pd~~r~~~~~l~~~~~~l  286 (426)
                      ++..++.|+|.|.+-.- ++              ++.++.+++.+++.|++|-+.++  +. ++....+-.- .+.+..+
T Consensus       135 ~~~l~~~gvD~il~ETm-~~--------------~~Ea~~a~~a~~~~~~Pv~~s~t--~~-~~g~l~~g~~-~e~~~~~  195 (361)
T d1lt7a_         135 LEVFMKKNVDFLIAEYF-EH--------------VEEAVWAVETLIASGKPVAATMA--IG-PEGDLHGVPP-GEAAVRL  195 (361)
T ss_dssp             HHHHHHTTCSEEEECCC-SC--------------HHHHHHHHHHHGGGSSCEEEEEC--CB-TTBSTTSCCH-HHHHHHH
T ss_pred             HHHHHhhccchhhhHHH-hh--------------HHHHHHHHHHHhhccceEEEEEE--Ec-CCCcccCCCc-HHHHHHH
Confidence            34556789998877632 22              44456778888999999876555  32 2222111111 2334456


Q ss_pred             HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 014369          287 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV  318 (426)
Q Consensus       287 ~~~Gad~I~l~DT~G~~~P~~v~~li~~l~~~  318 (426)
                      .+.+++.+.+.-+.|   |..+...++.+++.
T Consensus       196 ~~~~~~~~g~nc~~~---p~~~~~~i~~l~~~  224 (361)
T d1lt7a_         196 VKAGASIIGVNCHFD---PTISLKTVKLMKEG  224 (361)
T ss_dssp             HHTTCSEEEEESSSC---HHHHHHHHHHHHHH
T ss_pred             Hhcccchhhhccccc---hHhHHHHHHHHHHh
Confidence            678999888766554   77777777777653

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.18  E-value=16  Score=32.51  Aligned_cols=78  Identities=13%  Similarity=0.077  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE----cCCCC--------CCCHHHHHHHHHHHHHhcCCceEEEEeCCCcCcHHHHHHH
Q 014369          274 IPPSKVAYVAKELHDMGCFEISL----GDTIG--------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  341 (426)
Q Consensus       274 ~~~~~l~~~~~~l~~~Gad~I~l----~DT~G--------~~~P~~v~~li~~l~~~~p~~~i~~H~HNd~GlA~ANaLa  341 (426)
                      .+++++.++++.+.+.|+|.|.|    +.+.+        ...|+.+.++++.+++... .+|.+-.=-+...-..-+.+
T Consensus       113 ~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~-~pv~vKl~~~~~~~~~i~~~  191 (312)
T d1gtea2         113 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQ-IPFFAKLTPNVTDIVSIARA  191 (312)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCS-SCEEEEECSCSSCHHHHHHH
T ss_pred             cchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccC-CceeecccccchhHHHHHHH
Confidence            35788889999999999997776    33332        1478999999999998764 35655432333333344455


Q ss_pred             HHHcCCCEEee
Q 014369          342 SLQMGISTVDC  352 (426)
Q Consensus       342 Al~aGa~~VD~  352 (426)
                      +.++|++.|..
T Consensus       192 ~~~~g~~gi~~  202 (312)
T d1gtea2         192 AKEGGADGVTA  202 (312)
T ss_dssp             HHHHTCSEEEE
T ss_pred             HHHhcccceEE
Confidence            66899997753

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=80.17  E-value=0.84  Score=41.86  Aligned_cols=61  Identities=18%  Similarity=0.049  Sum_probs=44.1

Q ss_pred             ChhhHHHHHHcCCCEEEEeccCChHHHhhhcCCCHHHHHHHHHHHHHHHHhcCCcEEEEEE
Q 014369          203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  263 (426)
Q Consensus       203 ~~~di~~a~~~Gv~~V~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~v~~Ak~~G~~v~~~v~  263 (426)
                      +.+|++...+.|++.|||.++-.........+.-.++.++.+.++|+.|+++|+.|...+-
T Consensus        30 te~d~~~i~~~G~n~vRlpi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~H   90 (340)
T d1ceoa_          30 TEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH   90 (340)
T ss_dssp             CHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cHHHHHHHHHcCCCEEEeecCHHHhccCCCCCccCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            4678999999999999997643221111111222467899999999999999999987764