Citrus Sinensis ID: 014381

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
Protein Sequence
MEQGETISDFAPKKLARQLDFTICRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Secondary Structure (PSIPRED)
ccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHccccHHHHHHHHHHEEEEcHHHHHHHHHccccEEEEEEEEccc
Coil and Loop (DISEMBL)
meqgetisdfapkKLARQLDFTICRasangllpeqsvksqssqpqshsplqpqppksqpqvqskvaspsqsqplvrlqllppssqphvqahmrspsqampqwqarpqhvrmvnrvphpvhklplptlppgkqesprsrprantdgkdgtpkkqkqcncrnsrclkLYCECFaagiycdgcncvnchnnvEHEVARQEAVGatlernpnafrpkiassphgaqDAREDAREAQLAAKHnkgchckksgclkkYCECFQanilcsencrcldcknfegsEERRALFHGDHNGIAFMQRAANAAIIGAvgssgygtlmtsnkrksEELLFGVaakdqsvirnpqsqqgnnvqnsavpcsqsvpvsqtanasvlgstksalrspladilqpqDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Flexible Loop (DISEMBL)
meqgetisdfapkklARQLDFTICRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHpvhklplptlppgkqesprsrprantdgkdgtpkkqkqcncrnsRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Low Complexity Region (SEG)
MEQGETISDFAPKKLARQLDFTICRASANGLLPEqsvksqssqpqshsplqpqppksqpqvqskvASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGcncvnchnnvehevARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Disordered region (IsUnstruct)
****************RQLDFTICRA*********************************************************************************************************************************CNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVAR*******************************************KGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLM**********LFG************************************************************DMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACF**
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************RNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAF*****************************GCHCKKSGCLKKYCECFQANILCSENCRCLDCKNF**********************************************************************************************************LADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Disordered Region (DISEMBL)
********DFAPKKLARQLDFTICRASANGLLP***************************************PLVRLQLLPPS**********************PQHVRMVNRVPHPVHKLPLPTLPP***************************NCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIA**************************HCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Disordered Region (DISPRO)
*******SDFAPKKLARQLDFTICR**************************************************RLQLLP*************************************************************************QCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKI************************KGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGS**YGTL*T***********GV**KDQ************************************GSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQGETISDFAPKKLARQLDFTICRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQIFFIACFSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	425	2.2.26 [Sep-21-2011]
Q9SZD1	603	Protein tesmin/TSO1-like	yes	no	0.658	0.464	0.622	4e-98
Q9SL70	571	Protein tesmin/TSO1-like	no	no	0.837	0.623	0.474	3e-94
F4JY84	459	Protein tesmin/TSO1-like	no	no	0.764	0.708	0.446	8e-76
A1Z9E2	950	Protein lin-54 homolog OS	yes	no	0.385	0.172	0.405	3e-36
Q95QD7	435	Protein lin-54 OS=Caenorh	yes	no	0.418	0.409	0.4	2e-35
Q700D0	368	Protein tesmin/TSO1-like	no	no	0.550	0.635	0.363	2e-35
Q571G4	749	Protein lin-54 homolog OS	yes	no	0.301	0.170	0.532	1e-34
Q6MZP7	749	Protein lin-54 homolog OS	yes	no	0.287	0.162	0.548	3e-34
Q641Z1	749	Protein lin-54 homolog OS	yes	no	0.287	0.162	0.548	3e-34
Q0IHV2	741	Protein lin-54 homolog OS	yes	no	0.327	0.187	0.496	3e-34

>sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1

 Score =  358 bits (919), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 180/289 (62%), Positives = 218/289 (75%), Gaps = 9/289 (3%)

Query: 133 ESPRSR-PRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEH 191
           ESP++R PR N +G+DGTP+K+KQCNC++SRCLKLYCECFA+G YCDGCNCVNC NNV++
Sbjct: 110 ESPKARGPRPNVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDN 169

Query: 192 EVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKK 251
           E AR+EAV ATLERNP AFRPKIASSPHG +D RED  E  L  KHNKGCHCKKSGCLKK
Sbjct: 170 EPARREAVEATLERNPFAFRPKIASSPHGGRDKREDIGEVVLLGKHNKGCHCKKSGCLKK 229

Query: 252 YCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NGIAFMQRAANAAIIGAVGSSG 310
           YCECFQANILCSENC+CLDCKNFEGSEER+ALFHG+H N +A++Q+AANAAI GAVGSSG
Sbjct: 230 YCECFQANILCSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSG 289

Query: 311 YGTLMTSNKRKSEELLFGVAAKDQSVIRN-PQSQQGNNVQNSAVPCSQS--VPVSQTANA 367
           +       +RK +E+LF  A KD S + + PQ   G     +  P S +   PVS+    
Sbjct: 290 FAPSPAPKRRKGQEILFNQAIKDSSRLSHFPQVNNG----RTGGPTSGTSPSPVSRAGGN 345

Query: 368 SVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQ 416
           +    +K   RS LADI+QP D++ LCS+LV V+ EA KT T   + I+
Sbjct: 346 ASSVPSKFVYRSLLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIE 394

Plays a role in development of both male and female reproductive tissues (By similarity).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL70|TCX6_ARATH Protein tesmin/TSO1-like CXC 6 OS=Arabidopsis thaliana GN=TCX6 PE=1 SV=1

 Score =  345 bits (886), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/419 (47%), Positives = 253/419 (60%), Gaps = 63/419 (15%)

Query: 1   MEQGETISDFAPK---------KLARQLDFTICRASANGLLPEQSVKSQSSQPQSHSPLQ 51
           M +GE    F PK         K ARQLDFT   +       E S  +Q+S   + S   
Sbjct: 1   MGEGEEGDKFPPKTDEVTQESMKSARQLDFTGGSSDV-----EHSHSNQASSMAAASIPS 55

Query: 52  PQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRM 111
           P    ++P + S      Q+ P V   + PP                 PQ Q    HV +
Sbjct: 56  PIVTVTRPIITS------QAPPTVATPIPPP-----------------PQSQGIILHVPI 92

Query: 112 VNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECF 171
             R P P              ESP S PR   + +DGTP+K+KQCNC++SRCLKLYCECF
Sbjct: 93  --RHPRP--------------ESPNSMPRPAGETRDGTPQKKKQCNCKHSRCLKLYCECF 136

Query: 172 AAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREA 231
           A+G YCDGCNCVNC NNVE+E AR++AV +TLERNPNAFRPKIA+SPHG +D RE+  + 
Sbjct: 137 ASGTYCDGCNCVNCFNNVENEPARRQAVESTLERNPNAFRPKIAASPHGGRDNREEVGDV 196

Query: 232 QLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NG 290
            + A+HNKGCHCKKSGCLKKYCECFQANILCSENC+CLDCKNFEGSE R++LFHG+H + 
Sbjct: 197 VMLARHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEVRQSLFHGEHSHN 256

Query: 291 IAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQN 350
           +A++Q  ANAAI GA+GSSG+ +     +RK +E+ F    KD S  R  Q+  G     
Sbjct: 257 LAYLQH-ANAAITGAIGSSGFASAPPPKRRKGQEIFFNQGTKDSSTHRLGQANNGRT--- 312

Query: 351 SAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
                + S   S+    + LG +K   +S LA+I++P D+K LCS+LV V+ EA KTLT
Sbjct: 313 -----TSSQTGSRAGGNASLGPSKVVYKSLLANIIKPMDVKALCSVLVAVAGEAAKTLT 366

Plays a role in development of both male and female reproductive tissues (By similarity).

Arabidopsis thaliana (taxid: 3702)

>sp|F4JY84|TCX7_ARATH Protein tesmin/TSO1-like CXC 7 OS=Arabidopsis thaliana GN=TCX7 PE=1 SV=1

 Score =  284 bits (727), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 215/352 (61%), Gaps = 27/352 (7%)

Query: 62  QSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHK 121
           QS ++ P++     +  L PP   P V++  +S ++  P     PQ          P+H+
Sbjct: 13  QSDISIPAEKMDSFQKSLEPPPCSP-VKSSQQSETEVTP-----PQKP--------PLHQ 58

Query: 122 LPLPTLPPGK---QESPRSRPRANTDGKDGTP-KKQKQCNCRNSRCLKLYCECFAAGIYC 177
                +   +   Q+   SR     + K+ TP K+QK CNC+NS+CLKLYCECFA+G YC
Sbjct: 59  FGHNQVQKNRVSNQDPSTSRRHNEVESKENTPNKQQKHCNCKNSKCLKLYCECFASGSYC 118

Query: 178 DGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKH 237
           +GCNCVNCHN +E+E +RQ A+   LERNP+AF+PKIA SPHG +D +E+ ++  L  KH
Sbjct: 119 NGCNCVNCHNKLENESSRQVAISGILERNPDAFKPKIAGSPHGMKDLQENVQQVLLIGKH 178

Query: 238 NKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRA 297
           +KGCHC+KSGCLKKYCEC+QANILCSENCRC DCKNFEGSEER+AL HG      ++Q+ 
Sbjct: 179 SKGCHCRKSGCLKKYCECYQANILCSENCRCQDCKNFEGSEERKALLHGSQVSDTYIQQM 238

Query: 298 ANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQ 357
            NAA+  A+  S Y     S KRKS+++   V +         Q Q+ N+V+ +      
Sbjct: 239 TNAAVNRAIDMSAYLYPPESRKRKSKDISDSVVSS-----YGVQYQRANHVRRNGENSLF 293

Query: 358 SVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
           S+P     N +V GST SA RS  ++  QP  ++ELCSLLV  S +    L+
Sbjct: 294 SLP----NNKAVSGSTTSAYRSSWSNTFQPHHVRELCSLLVSNSVDVANKLS 341

Plays a role in development of both male and female reproductive tissues (By similarity).

Arabidopsis thaliana (taxid: 3702)

>sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1 SV=1

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 110/200 (55%), Gaps = 36/200 (18%)

Query: 89  QAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRP--------- 139
           QA  R   Q +P  Q+ P  V      P       LPTLPPG + +  ++P         
Sbjct: 672 QAKQRIRQQQLPTEQSTPIKVE-----PK------LPTLPPGVKANVPAKPLFEVLKPPA 720

Query: 140 ----RANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVAR 195
                   D   G   ++K CNC  S+CLKLYC+CFA G +C  C C +C NN+++EV R
Sbjct: 721 TAAAAGAVDPLGGMTSRRKHCNCSKSQCLKLYCDCFANGEFCQDCTCKDCFNNLDYEVER 780

Query: 196 QEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCEC 255
           + A+ + L+RNP+AF+PKI +   G  D R           HNKGC+CK+SGCLK YCEC
Sbjct: 781 ERAIRSCLDRNPSAFKPKITAPNSG--DMR----------LHNKGCNCKRSGCLKNYCEC 828

Query: 256 FQANILCSENCRCLDCKNFE 275
           ++A I CS  C+C+ C+N E
Sbjct: 829 YEAKIPCSSICKCVGCRNME 848

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes.

Drosophila melanogaster (taxid: 7227)

>sp|Q95QD7|LIN54_CAEEL Protein lin-54 OS=Caenorhabditis elegans GN=lin-54 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 17/195 (8%)

Query: 137 SRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQ 196
           S  R  T  K   P ++K CNC  S+CLKLYC+CFA G +C  CNC +CHNN+E++  R 
Sbjct: 158 SHIRLKTKKKVFAPGQRKPCNCTKSQCLKLYCDCFANGEFCRDCNCKDCHNNIEYDSQRS 217

Query: 197 EAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECF 256
           +A+  +LERNPNAF+PKI  +  G  D         +   H KGCHCKKSGCLK YCEC+
Sbjct: 218 KAIRQSLERNPNAFKPKIGIARGGITD---------IERLHQKGCHCKKSGCLKNYCECY 268

Query: 257 QANILCSENCRCLDCKNFEGSEERRALFHG----DHNGIAFMQRAANAAIIGAVGSSGYG 312
           +A + C++ C+C  C+N E     R    G    + N +  +  A++     A   SG G
Sbjct: 269 EAKVPCTDRCKCKGCQNTETYRMTRYKNSGGAVSNTNALMSLTNASST----ATPDSGPG 324

Query: 313 TLMTSNKRKSEELLF 327
           +++T       E + 
Sbjct: 325 SVVTDEHGDDYEDML 339

Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q700D0|TCX8_ARATH Protein tesmin/TSO1-like CXC 8 OS=Arabidopsis thaliana GN=TCX8 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 146/300 (48%), Gaps = 66/300 (22%)

Query: 118 PVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYC 177
           PV +LPL   PP  +E   S  +  TD +  T +K K C C+ S+CLKLYC+CFA+G+ C
Sbjct: 34  PVKELPL--FPPISRE--HSEAKDKTDEEGITSRKHKGCRCKQSKCLKLYCDCFASGVVC 89

Query: 178 DGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQ-DAREDAREAQLAAK 236
             C+CV+CHNN E   AR+ A+   L RNPNAF  K   S    Q  A  D +   L+  
Sbjct: 90  TDCDCVDCHNNSEKCDAREAAMVNVLGRNPNAFSEKALGSLTDNQCKAAPDTKPGLLS-- 147

Query: 237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQR 296
             +GC CK++ CLKKYCECFQAN+LCS+NC+C++CKN   SE  +      HN     +R
Sbjct: 148 --RGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKNV--SEAFQPPAFSAHNSPQVYRR 203

Query: 297 AANAAIIGAVGSSGYGTLMTSNKRKSEEL---------LFGVAAKDQSVIRNPQSQQGNN 347
                                  R+  EL         LF +   D S+          N
Sbjct: 204 -----------------------RRDRELTEWNSCPAPLFSIP--DNSI---------QN 229

Query: 348 VQNSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKT 407
              S + CS  +P  +    S++G T + L           D+ +LCSLLV  S  AT T
Sbjct: 230 ALGSPMSCSPKLPYRK--KRSLMGYTSTLL----------PDLGDLCSLLVAASESATTT 277

Plays a role in development of both male and female reproductive tissues (By similarity).

Arabidopsis thaliana (taxid: 3702)

>sp|Q571G4|LIN54_MOUSE Protein lin-54 homolog OS=Mus musculus GN=Lin54 PE=2 SV=2

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 95/139 (68%), Gaps = 11/139 (7%)

Query: 147 DGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERN 206
           + T + +K CNC  S CLKLYC+CFA G +C+ CNC NC+NN+EHE  RQ+A+ A L+RN
Sbjct: 516 ESTSRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575

Query: 207 PNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENC 266
           P AF+PKI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C
Sbjct: 576 PEAFKPKIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSIC 624

Query: 267 RCLDCKNFEGSEERRALFH 285
           +C+ CKNFE S ER+ L H
Sbjct: 625 KCIGCKNFEESPERKTLMH 643

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In G0 phase, the complex binds to more than 800 promoters and is required for repression of E2F target genes. In S phase, the complex selectively binds to the promoters of G2/M genes whose products are required for mitosis and participates in their cell cycle dependent activation. In the complex, acts as a DNA-binding protein that binds the promoter of CDK1 in a sequence-specific manner.

Mus musculus (taxid: 10090)

>sp|Q6MZP7|LIN54_HUMAN Protein lin-54 homolog OS=Homo sapiens GN=LIN54 PE=1 SV=3

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 11/133 (8%)

Query: 153 QKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRP 212
           +K CNC  S CLKLYC+CFA G +C+ CNC NC+NN+EHE  RQ+A+ A L+RNP AF+P
Sbjct: 522 RKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKP 581

Query: 213 KIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCK 272
           KI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C+C+ CK
Sbjct: 582 KIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCK 630

Query: 273 NFEGSEERRALFH 285
           NFE S ER+ L H
Sbjct: 631 NFEESPERKTLMH 643

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In G0 phase, the complex binds to more than 800 promoters and is required for repression of E2F target genes. In S phase, the complex selectively binds to the promoters of G2/M genes whose products are required for mitosis and participates in their cell cycle dependent activation. In the complex, acts as a DNA-binding protein that binds the promoter of CDK1 in a sequence-specific manner.

Homo sapiens (taxid: 9606)

>sp|Q641Z1|LIN54_RAT Protein lin-54 homolog OS=Rattus norvegicus GN=Lin54 PE=2 SV=2

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 11/133 (8%)

Query: 153 QKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRP 212
           +K CNC  S CLKLYC+CFA G +C+ CNC NC+NN+EHE  RQ+A+ A L+RNP AF+P
Sbjct: 522 RKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKP 581

Query: 213 KIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCK 272
           KI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C+C+ CK
Sbjct: 582 KIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCK 630

Query: 273 NFEGSEERRALFH 285
           NFE S ER+ L H
Sbjct: 631 NFEESPERKTLMH 643

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In G0 phase, the complex binds to more than 800 promoters and is required for repression of E2F target genes. In S phase, the complex selectively binds to the promoters of G2/M genes whose products are required for mitosis and participates in their cell cycle dependent activation. In the complex, acts as a DNA-binding protein that binds the promoter of CDK1 in a sequence-specific manner.

Rattus norvegicus (taxid: 10116)

>sp|Q0IHV2|LIN54_XENTR Protein lin-54 homolog OS=Xenopus tropicalis GN=lin54 PE=2 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/153 (49%), Positives = 101/153 (66%), Gaps = 14/153 (9%)

Query: 136 RSRPRANTDG---KDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVEHE 192
           +++PR   +G    +   + +K CNC  S CLKLYC+CFA G +C+ CNC NC+NN+EHE
Sbjct: 494 QNQPRGPLNGIISSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHE 553

Query: 193 VARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKY 252
             RQ+A+ A L+RNP AF+PKI     G  D R           H+KGC+CK+SGCLK Y
Sbjct: 554 NERQKAIKACLDRNPEAFKPKIGKGKEGESDRR-----------HSKGCNCKRSGCLKNY 602

Query: 253 CECFQANILCSENCRCLDCKNFEGSEERRALFH 285
           CEC++A I+CS  C+C+ CKNFE S ER+ L H
Sbjct: 603 CECYEAKIMCSSICKCIGCKNFEESPERKTLMH 635

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
255551004	629	transcription factor, putative [Ricinus	0.908	0.613	0.622	1e-127
224141773	682	predicted protein [Populus trichocarpa]	0.832	0.519	0.558	1e-112
356510007	515	PREDICTED: uncharacterized protein LOC10	0.891	0.735	0.540	1e-110
255546437	601	transcription factor, putative [Ricinus	0.828	0.585	0.541	1e-108
225445198	592	PREDICTED: uncharacterized protein LOC10	0.703	0.505	0.649	1e-108
224119800	519	predicted protein [Populus trichocarpa]	0.654	0.535	0.684	1e-108
356522716	559	PREDICTED: uncharacterized protein LOC10	0.68	0.516	0.666	1e-108
297738803	524	unnamed protein product [Vitis vinifera]	0.687	0.557	0.659	1e-107
224143568	545	predicted protein [Populus trichocarpa]	0.865	0.675	0.550	1e-107
356511363	561	PREDICTED: uncharacterized protein LOC10	0.698	0.529	0.649	1e-106

>gi|255551004|ref|XP_002516550.1| transcription factor, putative [Ricinus communis] gi|223544370|gb|EEF45891.1| transcription factor, putative [Ricinus communis]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/411 (62%), Positives = 297/411 (72%), Gaps = 25/411 (6%)

Query: 3   QGETISDFAPKKLARQLDFT-ICRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQV 61
           Q E ISDFAPKKLARQLDFT +CRAS N  L E S + Q  QP    P  P P     Q+
Sbjct: 5   QSEAISDFAPKKLARQLDFTAVCRASVNVALSEHSSRLQQQQPPPLPPPPPPPMSQP-QL 63

Query: 62  QSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRM---VNRVPHP 118
             K+    Q    ++L+  PP  QP                QARPQHV +   + R+PHP
Sbjct: 64  HLKLQQQPQPVLQLKLET-PPKQQPQA-------------TQARPQHVMVPPAMRRIPHP 109

Query: 119 VHKLPLPTLPPGKQESPRSRPRANTDGKD--GTPKKQKQCNCRNSRCLKLYCECFAAGIY 176
           V KL L TL   KQ+SP SRPR N + KD  GTPKK K CNC+NSRCLKLYCECFAAG++
Sbjct: 110 VQKLSLHTLQLIKQQSPSSRPRNNIEAKDNSGTPKKAKHCNCKNSRCLKLYCECFAAGVH 169

Query: 177 CDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAK 236
           C GCNC NCHNNVE+E +RQEAVGA LERNP AF+PKIASSPHG++DA+EDA E QL  K
Sbjct: 170 CTGCNCTNCHNNVENEASRQEAVGAVLERNPEAFKPKIASSPHGSRDAKEDAMEVQLVGK 229

Query: 237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQR 296
           HNKGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGSEERRALFH +HNGI +MQ+
Sbjct: 230 HNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERRALFHDNHNGIVYMQQ 289

Query: 297 AANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCS 356
           AANAAI GA+GSSGYGT +TSNKRKSEE LFG   +DQ   R  ++QQ N+ +N A   S
Sbjct: 290 AANAAICGAIGSSGYGTPLTSNKRKSEE-LFGSTNRDQLGRRVAKTQQENHQRNPAASAS 348

Query: 357 -QSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATK 406
             SVPV    NA+ LGS+K   +SPLA ILQPQD+K++CSLLV++S EA K
Sbjct: 349 PLSVPVPH--NATALGSSKFTYKSPLAGILQPQDVKKMCSLLVVLSQEARK 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141773|ref|XP_002324239.1| predicted protein [Populus trichocarpa] gi|222865673|gb|EEF02804.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/417 (55%), Positives = 280/417 (67%), Gaps = 63/417 (15%)

Query: 1   MEQGETISDFAPKKLARQ-LDFT--ICR-ASANGLLPEQSVKSQSSQPQSHSPLQPQPPK 56
           MEQ ET++++ PKKLA Q LDFT  ICR A AN       V SQ+ Q Q +  LQ Q P 
Sbjct: 1   MEQSETVTEYTPKKLAPQKLDFTAPICRTAPAN-------VPSQTQQVQVN--LQTQTPP 51

Query: 57  SQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARP--QH--VRMV 112
                                                      P +Q RP  QH  V + 
Sbjct: 52  RP-------------------------------------EMLPPPYQERPVSQHEAVAVA 74

Query: 113 NRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFA 172
            R+PHPVHK+    +P GKQ+SP SR  AN    DGTPKK KQCNC+NS CLKLYCECFA
Sbjct: 75  QRIPHPVHKIS--AMPRGKQDSPGSR-LAN----DGTPKKPKQCNCKNSMCLKLYCECFA 127

Query: 173 AGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQ 232
           AGI+C+GCNC+NC NNVE+E  R+EAV  TL+RNPNAFRPKIASSPHG++D  EDA+E Q
Sbjct: 128 AGIHCNGCNCLNCRNNVENEKERKEAVETTLQRNPNAFRPKIASSPHGSRDTTEDAQEVQ 187

Query: 233 LAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIA 292
           +  KHNKGC+CK+SGCLKKYCECFQ NI CSENC+CL+CKNFEGS+ERRALFHG  +  A
Sbjct: 188 MLGKHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFEGSDERRALFHGSPHATA 247

Query: 293 FMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSA 352
           + Q+A NAAI GA+GSSGYGT + S KRKSEE LFG+A KDQ      +  QGN ++NSA
Sbjct: 248 YAQQATNAAISGAIGSSGYGTTLASKKRKSEE-LFGIATKDQPAHSTAKFSQGNTLRNSA 306

Query: 353 VPCS-QSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTL 408
              S  SVPVS+TAN +VLGSTK   RSPLA +L+PQ +KE+C+LLV +S +AT+ L
Sbjct: 307 AFSSPLSVPVSRTANGAVLGSTKPTYRSPLAGVLKPQFVKEICTLLVTISGKATEAL 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510007|ref|XP_003523732.1| PREDICTED: uncharacterized protein LOC100811459 [Glycine max]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/409 (54%), Positives = 270/409 (66%), Gaps = 30/409 (7%)

Query: 1   MEQGETISDFAPKKLARQLDFTICRA--SANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQ 58
           MEQ ET SD AP+KLARQLDF       S   L P         +P SHSPL+ Q     
Sbjct: 1   MEQSETASDLAPRKLARQLDFAAVYGDPSHQKLPPPLPPPQSPLRPPSHSPLRLQ----- 55

Query: 59  PQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHP 118
                             L L PP  +P + +  +     +  +  RP+ V  V R+PHP
Sbjct: 56  ------------------LDLQPPGQRPWLYSEAQEQQPGL--YSPRPKLVSPVRRIPHP 95

Query: 119 VHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCD 178
           V K P+  L   K ESPRS+PR N + KD TPKKQKQCNC+NSRCLKLYCECFAAGIYCD
Sbjct: 96  VVKFPVKVLQVVKPESPRSQPRCNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCD 155

Query: 179 GCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHN 238
           GCNCVNCHNNV++E ARQEAVG TLERNPNAFRPKIASSP   +D++E   E ++  KHN
Sbjct: 156 GCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEQRDSKE--CEIKVIGKHN 213

Query: 239 KGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAA 298
           KGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGS+ER A+FH D+N +  M++AA
Sbjct: 214 KGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERIAIFHKDYN-LVHMKQAA 272

Query: 299 NAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQS 358
           NA I GAVGSSGYGT +T  KRK++E+  G +A DQ+V    Q  Q  +   S+      
Sbjct: 273 NATISGAVGSSGYGTHITPKKRKNQEMFPGKSAMDQTVNMTAQYLQEIDPMASSPSSLSD 332

Query: 359 VPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKT 407
             +S  +N  + GS++S  RS LAD+L+P ++K LCSL V++S  A KT
Sbjct: 333 SFISDPSNTRISGSSRSTYRSVLADVLKPNNVKNLCSLFVVLSRVAAKT 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546437|ref|XP_002514278.1| transcription factor, putative [Ricinus communis] gi|223546734|gb|EEF48232.1| transcription factor, putative [Ricinus communis]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/414 (54%), Positives = 274/414 (66%), Gaps = 62/414 (14%)

Query: 3   QGETISDFAPKKLARQLDFTI----CRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQ 58
           Q E++ DF  KKLARQLDFT        + N +LPE         PQS    Q QPP + 
Sbjct: 18  QSESL-DFPTKKLARQLDFTTQGNNNNNNNNVVLPEH--------PQS----QQQPPATV 64

Query: 59  PQVQSKVASPSQSQPLV--RLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVP 116
              Q  V +P Q Q +      LLPP  QP V+A                          
Sbjct: 65  ALPQEPVVAPQQPQAVAIPEAPLLPP--QPPVRAI------------------------- 97

Query: 117 HPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIY 176
                         K ESP+S+PR N + KDGTPK+QKQCNC++SRCLKLYCECFA+G Y
Sbjct: 98  --------------KPESPKSKPRPNAELKDGTPKRQKQCNCKHSRCLKLYCECFASGTY 143

Query: 177 CDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAK 236
           CDGCNCVNC+NNVE+E AR+EAV ATLERNPNAFRPKIASSPHG +D+RE+  E  +  K
Sbjct: 144 CDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREENGEGLILGK 203

Query: 237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NGIAFMQ 295
           HNKGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGDH N +A++Q
Sbjct: 204 HNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHTNNMAYIQ 263

Query: 296 RAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQ-NSAVP 354
           +AANAAI GA+GSSGY +   S KRK +ELLFG   KD S  R    QQ  +++ +++  
Sbjct: 264 QAANAAITGAIGSSGYVSPPISKKRKGQELLFGPTTKDPSFHRLGHFQQAVHIRPSTSSS 323

Query: 355 CSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTL 408
              S P+++  +++ LG +K   RS LADI+QPQD+KELCS+LV++S EA KTL
Sbjct: 324 SLSSNPIARAGSSATLGPSKFTYRSLLADIIQPQDLKELCSVLVVLSGEAAKTL 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445198|ref|XP_002280793.1| PREDICTED: uncharacterized protein LOC100249023 [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/308 (64%), Positives = 242/308 (78%), Gaps = 9/308 (2%)

Query: 117 HPVHKLPLP--TLPPG----KQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCEC 170
           HPV  +P+P  T  P     K ESPRSRPR N D KDGTPKKQKQCNC++SRCLKLYCEC
Sbjct: 65  HPV-TMPVPPQTTHPSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCEC 123

Query: 171 FAAGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDARE 230
           FA+GIYCDGCNCVNCHNNVE+E AR+EAV  TLERNPNAFRPKIASSPHGA+D+RE++ E
Sbjct: 124 FASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGE 183

Query: 231 AQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-N 289
           A +  KHNKGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGDH N
Sbjct: 184 ALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHAN 243

Query: 290 GIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQ 349
            +A++Q+AANAAI GA+GSSG+G+   S KRK +EL +G  +KD S+ R  Q QQ +  +
Sbjct: 244 SMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTK 303

Query: 350 -NSAVPCSQSVPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTL 408
            +       S PVS+  N++  G++K   RS LADI+QPQD+KELCS+LV+VS EA +T 
Sbjct: 304 ASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTF 363

Query: 409 TSIYHYIQ 416
               + ++
Sbjct: 364 ADKRNLVE 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119800|ref|XP_002331164.1| predicted protein [Populus trichocarpa] gi|222873247|gb|EEF10378.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/282 (68%), Positives = 229/282 (81%), Gaps = 4/282 (1%)

Query: 131 KQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNVE 190
           K ESP+SRPR N + KDGTPKKQKQCNC++SRCLKLYCECFA+G YCDGCNCVNC+NNVE
Sbjct: 90  KPESPKSRPRLNAELKDGTPKKQKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNVE 149

Query: 191 HEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLK 250
           +E AR+EAV ATLERNPNAFRPKIASSPHG +D+RE+  E  +  KHNKGCHCKKSGCLK
Sbjct: 150 NEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETGEGLVFVKHNKGCHCKKSGCLK 209

Query: 251 KYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NGIAFMQRAANAAIIGAVGSS 309
           KYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGDH N +A++Q+AANAAI GA+GSS
Sbjct: 210 KYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAYIQQAANAAITGAIGSS 269

Query: 310 GYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCS--QSVPVSQTANA 367
           GY +L  S KRK +EL FG   KD S  R    QQ ++++  A P S   S PV++  N 
Sbjct: 270 GYASLPVSRKRKGQELFFGQTVKDPSFHRLGHFQQASHIR-PAAPSSPLPSNPVARAGNT 328

Query: 368 SVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
           + LGS+K   RS LADI+Q QD+KELCS+LV++S EA KTL+
Sbjct: 329 TTLGSSKITYRSLLADIIQSQDLKELCSVLVVLSGEAAKTLS 370

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522716|ref|XP_003529992.1| PREDICTED: uncharacterized protein LOC100818116 [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/297 (66%), Positives = 230/297 (77%), Gaps = 8/297 (2%)

Query: 118 PVHKLPLPTLPP----GKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAA 173
           PV  LPLP   P    GK ESP+SR R N + KD TPKKQKQCNC++S+CLKLYCECFA+
Sbjct: 52  PVAVLPLPLQAPPARVGKPESPKSRSRPNFEMKDATPKKQKQCNCKHSKCLKLYCECFAS 111

Query: 174 GIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQL 233
           GIYCDGCNCVNC NNVE+E AR+EAV ATLERNPNAFRPKIASSPHG +D+REDA E  +
Sbjct: 112 GIYCDGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLI 171

Query: 234 AAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAF 293
             KHNKGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGD N +A+
Sbjct: 172 LGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMAY 231

Query: 294 MQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAV 353
           +Q+AANAAI GA+GSSGY +   S KRK +EL F    KD S+ +    QQ N+V+  A 
Sbjct: 232 IQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFWPTTKDPSISK--LGQQVNHVRGPA- 288

Query: 354 PCSQSVPVSQT-ANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
           P S   PVS      + LG +K   RS LADI+QPQ +KELCS+LV+VS +A KTLT
Sbjct: 289 PSSSLSPVSGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLT 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738803|emb|CBI28048.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/294 (65%), Positives = 236/294 (80%), Gaps = 2/294 (0%)

Query: 125 PTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVN 184
           P++   K ESPRSRPR N D KDGTPKKQKQCNC++SRCLKLYCECFA+GIYCDGCNCVN
Sbjct: 10  PSVRVVKPESPRSRPRPNIDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVN 69

Query: 185 CHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCK 244
           CHNNVE+E AR+EAV  TLERNPNAFRPKIASSPHGA+D+RE++ EA +  KHNKGCHCK
Sbjct: 70  CHNNVENEAARREAVEVTLERNPNAFRPKIASSPHGARDSREESGEALVLGKHNKGCHCK 129

Query: 245 KSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NGIAFMQRAANAAII 303
           KSGCLKKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGDH N +A++Q+AANAAI 
Sbjct: 130 KSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANSMAYIQQAANAAIT 189

Query: 304 GAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQ-NSAVPCSQSVPVS 362
           GA+GSSG+G+   S KRK +EL +G  +KD S+ R  Q QQ +  + +       S PVS
Sbjct: 190 GAIGSSGFGSPPVSKKRKGQELFYGPTSKDPSLHRLAQFQQASLTKASVTTSSLSSTPVS 249

Query: 363 QTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTSIYHYIQ 416
           +  N++  G++K   RS LADI+QPQD+KELCS+LV+VS EA +T     + ++
Sbjct: 250 RVPNSAASGTSKFTYRSLLADIIQPQDLKELCSVLVVVSEEAARTFADKRNLVE 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143568|ref|XP_002325000.1| predicted protein [Populus trichocarpa] gi|222866434|gb|EEF03565.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/405 (55%), Positives = 270/405 (66%), Gaps = 37/405 (9%)

Query: 10  FAPKKLARQLDFTICRASANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPS 69
           F  KKLARQLDFT       G+LP+         PQS    QP P +  P + S  A+ S
Sbjct: 23  FQTKKLARQLDFT------QGVLPDH--------PQS----QPSPLQKPPLLVSPAAAQS 64

Query: 70  QSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPP 129
           Q QP  + QL        +Q   +  +Q   Q        R V R+  P+ + P      
Sbjct: 65  QPQPHPQSQLQLQPQVAEIQVVPQQQTQQQQQP------ARAVLRLLPPMFRKP------ 112

Query: 130 GKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGCNCVNCHNNV 189
              ESP+S P  NT+ KDGTPKKQ+QCNC++SRCLKLYCECFA+G YCDGCNCVNC+NNV
Sbjct: 113 ---ESPKSIPIPNTELKDGTPKKQRQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNV 169

Query: 190 EHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCL 249
           E+E AR+EAV ATLERNPNAFRPKIASSPHG +D+RE+  +  +  KHNKGCHCKKSGCL
Sbjct: 170 ENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETGDGLVFVKHNKGCHCKKSGCL 229

Query: 250 KKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDH-NGIAFMQRAANAAIIGAVGS 308
           KKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGDH N +A++Q+AANAAI GA+GS
Sbjct: 230 KKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAYIQQAANAAITGAIGS 289

Query: 309 SGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQN---SAVPCSQSVPVSQTA 365
           SGY +   S KRK +EL FG   KDQS  R    QQ N       +      S P+++  
Sbjct: 290 SGYASPPVSRKRKGQELFFGHTVKDQSFDRLGHFQQVNGSHTRPPAPSSSLPSNPIARAG 349

Query: 366 NASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTS 410
           NA  LG +K   RS LADI+QPQD+KELCS+LV++S EA KT + 
Sbjct: 350 NAITLGPSKITYRSLLADIIQPQDLKELCSVLVVLSGEAAKTFSD 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511363|ref|XP_003524396.1| PREDICTED: uncharacterized protein LOC100786353 [Glycine max]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/305 (64%), Positives = 238/305 (78%), Gaps = 8/305 (2%)

Query: 116 PHPVHKLPLP---TLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFA 172
           P P   LPLP   ++  GK ESP+SRPR   + K+ TPKKQKQCNC++S+CLKLYCECFA
Sbjct: 52  PQPPVILPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFA 111

Query: 173 AGIYCDGCNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQ 232
           +GIYCDGCNCVNC+NNVE+E AR+EAV ATLERNPNAFRPKIASSPHG +D+REDA E  
Sbjct: 112 SGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVL 171

Query: 233 LAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGD-HNGI 291
           +  KHNKGCHCKKSGCLKKYCECFQANILCSENC+C+DCKNFEGSEER+ALFHGD +N +
Sbjct: 172 ILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNM 231

Query: 292 AFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNS 351
            ++Q+AANAAI GA+GSSGY +   S KRK +ELLFG   KD SV R  Q QQ NNV+  
Sbjct: 232 VYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGPTVKDPSVGR--QGQQANNVRVP 289

Query: 352 AVPCSQS-VPVSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLTS 410
           A   S S +P ++   A+ LG +K   RS LADI+QPQ +KELCS+LV+VS +A K  T 
Sbjct: 290 APSSSLSPIPGARVGPAT-LGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKMFTD 348

Query: 411 IYHYI 415
             +++
Sbjct: 349 HKNFM 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
TAIR|locus:2119981	603	AT4G29000 [Arabidopsis thalian	0.712	0.502	0.565	3.9e-89
TAIR|locus:2061683	571	AT2G20110 [Arabidopsis thalian	0.654	0.486	0.550	1.3e-82
TAIR|locus:2145294	459	AT5G25790 [Arabidopsis thalian	0.757	0.701	0.428	3.6e-66
TAIR|locus:2093417	368	AT3G16160 [Arabidopsis thalian	0.348	0.402	0.439	1.5e-35
MGI|MGI:2140902	749	Lin54 "lin-54 homolog (C. eleg	0.331	0.188	0.437	1.5e-33
ZFIN|ZDB-GENE-060929-440	771	lin54 "lin-54 homolog" [Danio	0.411	0.226	0.380	1.8e-33
RGD|1311361	749	Lin54 "lin-54 homolog (C. eleg	0.331	0.188	0.431	5.1e-33
UNIPROTKB|Q6MZP7	749	LIN54 "Protein lin-54 homolog"	0.331	0.188	0.431	8.3e-33
TAIR|locus:2094369	695	TSO1 "CHINESE FOR 'UGLY'" [Ara	0.369	0.225	0.395	1.5e-30
WB|WBGene00003037	435	lin-54 [Caenorhabditis elegans	0.489	0.478	0.358	1.6e-29

TAIR|locus:2119981 AT4G29000 [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 177/313 (56%), Positives = 214/313 (68%)

Query:   103 QARPQHVRMVNRVPHPVHKLPLPTLPPGKQ--ESPRSR-PRANTDGKDGTPKKQKQCNCR 159
             Q RP  + M   + +P  +  +   P      ESP++R PR N +G+DGTP+K+KQCNC+
Sbjct:    79 QVRPT-LPMATTMSNPPSQSQIVNAPIRHPIPESPKARGPRPNVEGRDGTPQKKKQCNCK 137

Query:   160 NSRCLKLYCECFAAGIYCDGXXXXXXXXXXXXXXARQEAVGATLERNPNAFRPKIASSPH 219
             +SRCLKLYCECFA+G YCDG              AR+EAV ATLERNP AFRPKIASSPH
Sbjct:   138 HSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREAVEATLERNPFAFRPKIASSPH 197

Query:   220 GAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEE 279
             G +D RED  E  L  KHNKGCHCKKSGCLKKYCECFQANILCSENC+CLDCKNFEGSEE
Sbjct:   198 GGRDKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEE 257

Query:   280 RRALFHGDH-NGIAFMQRAANAAIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIR 338
             R+ALFHG+H N +A++Q+AANAAI GAVGSSG+       +RK +E+LF  A KD S + 
Sbjct:   258 RQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRRKGQEILFNQAIKDSSRLS 317

Query:   339 N-PQSQQGNNVQNSAVPCSQSVPVSQTA-NASVLGSTKSALRSPLADILQPQDMKELCSL 396
             + PQ   G          +   PVS+   NAS + S K   RS LADI+QP D++ LCS+
Sbjct:   318 HFPQVNNGRT--GGPTSGTSPSPVSRAGGNASSVPS-KFVYRSLLADIIQPHDVRALCSV 374

Query:   397 LVMVSSEATKTLT 409
             LV V+ EA KT T
Sbjct:   375 LVTVAGEAAKTST 387

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061683 AT2G20110 [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
 Identities = 159/289 (55%), Positives = 203/289 (70%)

Query:   122 LPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGXX 181
             L +P   P + ESP S PR   + +DGTP+K+KQCNC++SRCLKLYCECFA+G YCDG  
Sbjct:    88 LHVPIRHP-RPESPNSMPRPAGETRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCN 146

Query:   182 XXXXXXXXXXXXARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGC 241
                         AR++AV +TLERNPNAFRPKIA+SPHG +D RE+  +  + A+HNKGC
Sbjct:   147 CVNCFNNVENEPARRQAVESTLERNPNAFRPKIAASPHGGRDNREEVGDVVMLARHNKGC 206

Query:   242 HCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHN-GIAFMQRAANA 300
             HCKKSGCLKKYCECFQANILCSENC+CLDCKNFEGSE R++LFHG+H+  +A++Q A NA
Sbjct:   207 HCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEVRQSLFHGEHSHNLAYLQHA-NA 265

Query:   301 AIIGAVGSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVP 360
             AI GA+GSSG+ +     +RK +E+ F    KD S  R  Q+  G     S+   S++  
Sbjct:   266 AITGAIGSSGFASAPPPKRRKGQEIFFNQGTKDSSTHRLGQANNGRTT--SSQTGSRA-- 321

Query:   361 VSQTANASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
                  NAS LG +K   +S LA+I++P D+K LCS+LV V+ EA KTLT
Sbjct:   322 ---GGNAS-LGPSKVVYKSLLANIIKPMDVKALCSVLVAVAGEAAKTLT 366

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2145294 AT5G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 147/343 (42%), Positives = 201/343 (58%)

Query:    68 PSQSQPLVRLQLLPPSSQPHVQAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTL 127
             P++     +  L PP   P V++  +S ++  P  Q  P H    N+V    +++     
Sbjct:    19 PAEKMDSFQKSLEPPPCSP-VKSSQQSETEVTPP-QKPPLHQFGHNQVQK--NRV----- 69

Query:   128 PPGKQESPRSRPRANTDGKDGTP-KKQKQCNCRNSRCLKLYCECFAAGIYCDGXXXXXXX 186
                 Q+   SR     + K+ TP K+QK CNC+NS+CLKLYCECFA+G YC+G       
Sbjct:    70 --SNQDPSTSRRHNEVESKENTPNKQQKHCNCKNSKCLKLYCECFASGSYCNGCNCVNCH 127

Query:   187 XXXXXXXARQEAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKS 246
                    +RQ A+   LERNP+AF+PKIA SPHG +D +E+ ++  L  KH+KGCHC+KS
Sbjct:   128 NKLENESSRQVAISGILERNPDAFKPKIAGSPHGMKDLQENVQQVLLIGKHSKGCHCRKS 187

Query:   247 GCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFHGDHNGIAFMQRAANAAIIGAV 306
             GCLKKYCEC+QANILCSENCRC DCKNFEGSEER+AL HG      ++Q+  NAA+  A+
Sbjct:   188 GCLKKYCECYQANILCSENCRCQDCKNFEGSEERKALLHGSQVSDTYIQQMTNAAVNRAI 247

Query:   307 GSSGYGTLMTSNKRKSEELLFGVAAKDQSVIRNPQSQQGNNVQNSAVPCSQSVPVSQTAN 366
               S Y     S KRKS+++   V +    V    Q Q+ N+V+ +      S+P     N
Sbjct:   248 DMSAYLYPPESRKRKSKDISDSVVSS-YGV----QYQRANHVRRNGENSLFSLP----NN 298

Query:   367 ASVLGSTKSALRSPLADILQPQDMKELCSLLVMVSSEATKTLT 409
              +V GST SA RS  ++  QP  ++ELCSLLV  S +    L+
Sbjct:   299 KAVSGSTTSAYRSSWSNTFQPHHVRELCSLLVSNSVDVANKLS 341

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093417 AT3G16160 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 69/157 (43%), Positives = 91/157 (57%)

Query:   118 PVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYC 177
             PV +LPL   PP  +E   S  +  TD +  T +K K C C+ S+CLKLYC+CFA+G+ C
Sbjct:    34 PVKELPL--FPPISRE--HSEAKDKTDEEGITSRKHKGCRCKQSKCLKLYCDCFASGVVC 89

Query:   178 DGXXXXXXXXXXXXXXARQEAVGATLERNPNAFRPKIASSPHGAQ-DAREDAREAQLAAK 236
                             AR+ A+   L RNPNAF  K   S    Q  A  D +   L+  
Sbjct:    90 TDCDCVDCHNNSEKCDAREAAMVNVLGRNPNAFSEKALGSLTDNQCKAAPDTKPGLLS-- 147

Query:   237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKN 273
               +GC CK++ CLKKYCECFQAN+LCS+NC+C++CKN
Sbjct:   148 --RGCKCKRTRCLKKYCECFQANLLCSDNCKCINCKN 182

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

MGI|MGI:2140902 Lin54 "lin-54 homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 67/153 (43%), Positives = 88/153 (57%)

Query:   147 DGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGXXXXXXXXXXXXXXARQEAVGATLERN 206
             + T + +K CNC  S CLKLYC+CFA G +C+                RQ+A+ A L+RN
Sbjct:   516 ESTSRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575

Query:   207 PNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENC 266
             P AF+PKI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C
Sbjct:   576 PEAFKPKIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSIC 624

Query:   267 RCLDCKNFEGSEERRALFH-GDHNGIAFMQRAA 298
             +C+ CKNFE S ER+ L H  D   +   Q+ A
Sbjct:   625 KCIGCKNFEESPERKTLMHLADAAEVRVQQQTA 657

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060929-440 lin54 "lin-54 homolog" [Danio rerio (taxid:7955)]

 Score = 354 (129.7 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
 Identities = 73/192 (38%), Positives = 104/192 (54%)

Query:   112 VNRVPHPVHKLPLPTLPPGKQESP-RSRPRANTDG---KDGTPKKQKQCNCRNSRCLKLY 167
             V ++P P   + L +       +P +++ R + +G    +   + +K CNC  S+CLKLY
Sbjct:   501 VTQIPQPAF-VTLTSSSTFSTATPSQAQARLSLNGLSTSEANSRPRKPCNCTRSQCLKLY 559

Query:   168 CECFAAGIYCDGXXXXXXXXXXXXXXARQEAVGATLERNPNAFRPKIASSPHGAQDARED 227
             C+CFA G +C+                R +A+ A L+RNP AF+PKI     G  D R  
Sbjct:   560 CDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRNPVAFKPKIGKGKEGESDRR-- 617

Query:   228 AREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEERRALFH-G 286
                      H+KGC+CKKSGCLK YCEC++A I+CS  C+C+ CKNFE S ER+ L H  
Sbjct:   618 ---------HSKGCNCKKSGCLKNYCECYEAKIMCSSICKCMGCKNFEESPERKTLMHLA 668

Query:   287 DHNGIAFMQRAA 298
             D   +   Q+ A
Sbjct:   669 DAAEVRVQQQTA 680

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

RGD|1311361 Lin54 "lin-54 homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 352 (129.0 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
 Identities = 66/153 (43%), Positives = 87/153 (56%)

Query:   147 DGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGXXXXXXXXXXXXXXARQEAVGATLERN 206
             +   + +K CNC  S CLKLYC+CFA G +C+                RQ+A+ A L+RN
Sbjct:   516 ESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575

Query:   207 PNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENC 266
             P AF+PKI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C
Sbjct:   576 PEAFKPKIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSIC 624

Query:   267 RCLDCKNFEGSEERRALFH-GDHNGIAFMQRAA 298
             +C+ CKNFE S ER+ L H  D   +   Q+ A
Sbjct:   625 KCIGCKNFEESPERKTLMHLADAAEVRVQQQTA 657

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|Q6MZP7 LIN54 "Protein lin-54 homolog" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 8.3e-33, Sum P(2) = 8.3e-33
 Identities = 66/153 (43%), Positives = 87/153 (56%)

Query:   147 DGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGXXXXXXXXXXXXXXARQEAVGATLERN 206
             +   + +K CNC  S CLKLYC+CFA G +C+                RQ+A+ A L+RN
Sbjct:   516 ESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRN 575

Query:   207 PNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENC 266
             P AF+PKI     G  D R           H+KGC+CK+SGCLK YCEC++A I+CS  C
Sbjct:   576 PEAFKPKIGKGKEGESDRR-----------HSKGCNCKRSGCLKNYCECYEAKIMCSSIC 624

Query:   267 RCLDCKNFEGSEERRALFH-GDHNGIAFMQRAA 298
             +C+ CKNFE S ER+ L H  D   +   Q+ A
Sbjct:   625 KCIGCKNFEESPERKTLMHLADAAEVRVQQQTA 657

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

TAIR|locus:2094369 TSO1 "CHINESE FOR 'UGLY'" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 66/167 (39%), Positives = 94/167 (56%)

Query:   118 PVHKLPLPTL-PPGKQESPRSRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIY 176
             PV ++P   + P     S + + R +    +G  +  K+CNC+ S+CLKLYCECFAAG+Y
Sbjct:   366 PVEEVPKALVFPELNLGSLKKKMRKSEQAGEG--ESCKRCNCKKSKCLKLYCECFAAGVY 423

Query:   177 CDGXXXXXXXXXXXXXXARQEAVGAT---LE-RNPNAFRPKIASSPHGAQDAREDAREAQ 232
             C                  +E V AT   +E RNP AF PK+  +     +A +DA +  
Sbjct:   424 C---IEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNADSIMEASDDASKTP 480

Query:   233 LAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEGSEE 279
              +A+H +GC+CKKS C+KKYCEC+Q  + CS NCRC  C N  G ++
Sbjct:   481 ASARHKRGCNCKKSNCMKKYCECYQGGVGCSMNCRCEGCTNVFGRKD 527

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0048444 "floral organ morphogenesis" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

WB|WBGene00003037 lin-54 [Caenorhabditis elegans (taxid:6239)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 80/223 (35%), Positives = 107/223 (47%)

Query:   137 SRPRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDGXXXXXXXXXXXXXXARQ 196
             S  R  T  K   P ++K CNC  S+CLKLYC+CFA G +C                 R 
Sbjct:   158 SHIRLKTKKKVFAPGQRKPCNCTKSQCLKLYCDCFANGEFCRDCNCKDCHNNIEYDSQRS 217

Query:   197 EAVGATLERNPNAFRPKIASSPHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECF 256
             +A+  +LERNPNAF+PKI  +  G  D         +   H KGCHCKKSGCLK YCEC+
Sbjct:   218 KAIRQSLERNPNAFKPKIGIARGGITD---------IERLHQKGCHCKKSGCLKNYCECY 268

Query:   257 QANILCSENCRCLDCKNFEGSEERRALFHGD--HNGIAFMQRAANAAIIGAVGSSGYGTL 314
             +A + C++ C+C  C+N E     R    G    N  A M    NA+   A   SG G++
Sbjct:   269 EAKVPCTDRCKCKGCQNTETYRMTRYKNSGGAVSNTNALMS-LTNASST-ATPDSGPGSV 326

Query:   315 MTSNKRKS-EELLFGVAAK-DQSVIRNPQSQQGNNVQNSAVPC 355
             +T       E++L     K +    R P     + V  +A  C
Sbjct:   327 VTDEHGDDYEDMLLSHKPKVEMDPRRFPWYYMTDEVVEAATMC 369

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0070176 "DRM complex" evidence=IDA

GO:0030849 "autosome" evidence=IDA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	425
pfam03638	42	pfam03638, CXC, Tesmin/TSO1-like CXC domain	4e-18
pfam03638	42	pfam03638, CXC, Tesmin/TSO1-like CXC domain	5e-16
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	4e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-04

>gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain

 Score = 77.3 bits (191), Expect = 4e-18
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 236 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKN 273
           +H KGC+CKKS CLKKYCECF A   CS  C+C  CKN
Sbjct: 1   RHKKGCNCKKSKCLKKYCECFAAGKYCSSLCKCEGCKN 38

This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in. Length = 42

>gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain

 Score = 71.1 bits (175), Expect = 5e-16
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 151 KKQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEH 191
           + +K CNC+ S+CLK YCECFAAG YC   C C  C N  E+
Sbjct: 1   RHKKGCNCKKSKCLKKYCECFAAGKYCSSLCKCEGCKNKEEN 42

This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in. Length = 42

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 28  ANGLLPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPH 87
                PEQ    Q     S +P QP  P   PQ            P +  Q+ PP  QP 
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQP--PPLQQPQFPGLSQQMPPPPPQPP 263

Query: 88  VQAHMRSPSQAMP----QWQARPQHVRMVNRVPHPV---HKLPLPTLPPGKQESPRSRPR 140
            Q       QA P    Q    P   +  N    P      LPL   P G+Q  P+ R +
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQ 323

Query: 141 AN 142
             
Sbjct: 324 LV 325

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 30  GLLPEQS-VKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHV 88
            + P Q   +  + Q Q   P QP  P+ Q Q   +  +P       +  + P       
Sbjct: 748 IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP 807

Query: 89  QAHMRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQES 134
           Q     P    PQ+Q   Q V      P P ++ P   + P  Q++
Sbjct: 808 Q----QPVAPQPQYQQPQQPV-----APQPQYQQPQQPVAPQPQDT 844

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 33  PEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHM 92
           P+Q V  Q    Q   P+ PQP   QPQ       P   QP  +    P + QP  Q   
Sbjct: 781 PQQPVAPQPQYQQPQQPVAPQPQYQQPQ------QPVAPQPQYQQPQQPVAPQPQYQQPQ 834

Query: 93  RSPSQAMPQWQARPQHVRMVNRVPHPVHK--LPLPTL----PPGKQESP 135
           +  +         P  + M N    P+HK   PLP+L    PP  +  P
Sbjct: 835 QPVAPQPQDTLLHP--LLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 26/103 (25%), Positives = 33/103 (32%), Gaps = 19/103 (18%)

Query: 39   SQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHMRSPSQA 98
            S+S++  +  P QP+ P  QPQ         Q  P       PP  QP      R     
Sbjct: 2892 SRSTESFALPPDQPERPP-QPQAPPPPQPQPQPPP-------PPQPQPPPPPPPRPQPPL 2943

Query: 99   MPQWQARPQHVRMVNRVPHPVHKLPLP---TLPPGKQESPRSR 138
             P                 P   +P P    L PG+   PR R
Sbjct: 2944 APTTDPAGA--------GEPSGAVPQPWLGALVPGRVAVPRFR 2978

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 4/87 (4%)

Query: 33  PEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHM 92
             Q +     QP       PQP    P        P   Q        PP  QP +   +
Sbjct: 251 LSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL--PPPQQPQLLPLV 308

Query: 93  RSP--SQAMPQWQARPQHVRMVNRVPH 117
           + P   Q  PQ++ +   +    R   
Sbjct: 309 QQPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	425
KOG1171	406	consensus Metallothionein-like protein [Inorganic	100.0
PF03638	42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	99.58
PF03638	42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	99.58
KOG1171	406	consensus Metallothionein-like protein [Inorganic	99.43
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	95.43
KOG3813	640	consensus Uncharacterized conserved protein (tumor	81.1

>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.5e-46  Score=374.13  Aligned_cols=136  Identities=60%  Similarity=1.229  Sum_probs=128.7

Q ss_pred             cccCCCCCCCCCCCCccccccCccccccchhhhcCCCCCCC-CCCCCCCCCccchHHHHHHHHHHHhhCCCCCCccccCC
Q 014381          139 PRANTDGKDGTPKKQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEHEVARQEAVGATLERNPNAFRPKIASS  217 (425)
Q Consensus       139 ~~~~~e~kdgtpkk~K~CnCKKSkCLKLYCECFaaG~~C~~-CnC~nC~N~~ene~eR~eAIe~iL~RNP~AF~PKI~~s  217 (425)
                      .....+..++++-+++.||||+|+|||+||||||+|.||++ |+|+||+|+.+|+++|.+|++.+|+|||+||+|||+++
T Consensus       117 ~~s~~~~~~~~~g~k~~~~ck~SkclklYCeCFAsG~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s  196 (406)
T KOG1171|consen  117 VKTKKGTSQGAPGSKKKCNCKKSKCLKLYCECFASGVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAAS  196 (406)
T ss_pred             CccccccccCCCCCccCCCchHHHHHHHhHHHHhhcccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccC
Confidence            34455667888888999999999999999999999999996 99999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHhhhcCCCcccCCccccchhhhhhhcCCccCCCCcccCCCCC
Q 014381          218 PHGAQDAREDAREAQLAAKHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNF  274 (425)
Q Consensus       218 ~~~~~d~~~~a~~~~~~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs~~CkC~~CkN~  274 (425)
                      .++..+..+++...+..++|++|||||||+|||+||||||+|++|+++|+|++|+|+
T Consensus       197 ~~~~~da~~~~~~~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~~CkN~  253 (406)
T KOG1171|consen  197 SSGIADASEEASKTPASARHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQGCKNN  253 (406)
T ss_pred             CcccchhhhhhhccchhhhhcCCCCCccccchHHHHHHHhcCCCccccccCcCCccc
Confidence            999999999999999999999999999999999999999999999999999999993

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C

Probab=99.58  E-value=6.2e-16  Score=113.91  Aligned_cols=41  Identities=61%  Similarity=1.446  Sum_probs=37.9

Q ss_pred             CCCccccccCccccccchhhhcCCCCCC-CCCCCCCCCCccc
Q 014381          151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCVNCHNNVEH  191 (425)
Q Consensus       151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~nC~N~~en  191 (425)
                      ++.++|+|+||+|||+|||||++|++|+ .|+|.+|+|+.+|
T Consensus         1 ~~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~~   42 (42)
T PF03638_consen    1 KKKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEEN   42 (42)
T ss_pred             CCCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCCC
Confidence            3578999999999999999999999998 6999999998875

The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C

Probab=99.58  E-value=8.1e-16  Score=113.30  Aligned_cols=40  Identities=63%  Similarity=1.395  Sum_probs=38.3

Q ss_pred             cCCCcccCCccccchhhhhhhcCCccCCCCcccCCCCCCC
Q 014381          237 HNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFEG  276 (425)
Q Consensus       237 ~~kGC~CKKS~CLK~YCeCF~ag~~Cs~~CkC~~CkN~e~  276 (425)
                      +.+||+|+||+|||+|||||++|++|++.|+|++|+|.++
T Consensus         2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~~C~N~~~   41 (42)
T PF03638_consen    2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQNCKNTEE   41 (42)
T ss_pred             CCCCCcccCcChhhhhCHHHHCcCcCCCCcccCCCCCcCC
Confidence            5789999999999999999999999999999999999876

The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].

>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]

Probab=99.43  E-value=5.1e-14  Score=143.67  Aligned_cols=125  Identities=29%  Similarity=0.544  Sum_probs=80.3

Q ss_pred             CCCccccccCccccccchhhhcCCCCCC-CCCCCCCCCCccchHH------HHHHHHHH--------HhhCCCCCC----
Q 014381          151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCVNCHNNVEHEVA------RQEAVGAT--------LERNPNAFR----  211 (425)
Q Consensus       151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~nC~N~~ene~e------R~eAIe~i--------L~RNP~AF~----  211 (425)
                      +|++|||||||+|||.|||||++|+.|+ +|+|.+|+|+..+.+.      ++ +...+        ...|-.+++    
T Consensus       215 ~hkkGC~CkkSgClKkYCECyQa~vlCS~nCkC~~CkN~~g~~~s~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~  293 (406)
T KOG1171|consen  215 RHKKGCNCKKSGCLKKYCECYQAGVLCSSNCKCQGCKNNFGYKDSKTQQPPTK-ALMSTPVESSGPAAQQNTEARRKSDP  293 (406)
T ss_pred             hhcCCCCCccccchHHHHHHHhcCCCccccccCcCCccchhhccccccCCchh-hhccccccccccccccccccccCCCC
Confidence            6899999999999999999999999998 8999999995444332      11 11111        122222211    


Q ss_pred             ---------ccccCCCCCCcc-hhh----------hHHHH-HH---------hhhcCC--CcccCCccccchhhhhhhcC
Q 014381          212 ---------PKIASSPHGAQD-ARE----------DAREA-QL---------AAKHNK--GCHCKKSGCLKKYCECFQAN  259 (425)
Q Consensus       212 ---------PKI~~s~~~~~d-~~~----------~a~~~-~~---------~~k~~k--GC~CKKS~CLK~YCeCF~ag  259 (425)
                               |.+...+....| .+.          ++... ++         ......  +|.+....+|+.|++|+..-
T Consensus       294 ~~~~~~~~~~~~~~lp~~~~d~~r~~~~~~~~~v~ea~~~cm~~~~~~~~~~e~~~~~~~~~~~~e~~vl~~f~~cl~~~  373 (406)
T KOG1171|consen  294 PASPLPDNDPLLLHLPDLSDDGNRLPPNTLALEVDEAITICMLAQAEEAKPVEQSQNEGDKELEQEQLVLEEFGRCLEQI  373 (406)
T ss_pred             CCCCcccccccccCCcccccCcCCCChHHHhhhhhhHHHHHHhhccccccchhhcccccchhHHHHHHHHHHHHHHHhcc
Confidence                     000111111111 000          00000 00         111223  69999999999999999999


Q ss_pred             CccCCCCcccCCCCCCC
Q 014381          260 ILCSENCRCLDCKNFEG  276 (425)
Q Consensus       260 ~~Cs~~CkC~~CkN~e~  276 (425)
                      +-|...+++.+|.+.++
T Consensus       374 i~~~~~~~~~~~r~~~~  390 (406)
T KOG1171|consen  374 IPNITELSPDGDRASED  390 (406)
T ss_pred             ccccceecccccccccc
Confidence            99999999999999876

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=95.43  E-value=0.0075  Score=66.25  Aligned_cols=62  Identities=35%  Similarity=0.997  Sum_probs=50.7

Q ss_pred             CCCccccccCccccccchhhhcCCCCCC-CCCCC-CCCCCccchHHHHHHHHHHHhhCCCCCCccccCCCCCCcchhhhH
Q 014381          151 KKQKQCNCRNSRCLKLYCECFAAGIYCD-GCNCV-NCHNNVEHEVARQEAVGATLERNPNAFRPKIASSPHGAQDAREDA  228 (425)
Q Consensus       151 kk~K~CnCKKSkCLKLYCECFaaG~~C~-~CnC~-nC~N~~ene~eR~eAIe~iL~RNP~AF~PKI~~s~~~~~d~~~~a  228 (425)
                      ++-.+|||-+      -|.|-..+.+|. -|.|. +|+|.                     |                  
T Consensus       505 ~hp~~c~c~~------~C~C~~n~~~CEk~C~C~~dC~nr---------------------F------------------  539 (739)
T KOG1079|consen  505 DHPGPCNCGV------GCPCIDNETFCEKFCYCSPDCRNR---------------------F------------------  539 (739)
T ss_pred             cCCCCCCCCC------CCcccccCcchhhcccCCHHHHhc---------------------C------------------
Confidence            4556677433      488889999998 69998 88882                     2                  


Q ss_pred             HHHHHhhhcCCCcccCCccccchhhhhhhcCCccC-CCCcc
Q 014381          229 REAQLAAKHNKGCHCKKSGCLKKYCECFQANILCS-ENCRC  268 (425)
Q Consensus       229 ~~~~~~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs-~~CkC  268 (425)
                                .||+| +++|.-+-|.||.|..-|. +-|.+
T Consensus       540 ----------~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~  569 (739)
T KOG1079|consen  540 ----------PGCRC-KAQCNTKQCPCYLAVRECDPDVCLM  569 (739)
T ss_pred             ----------CCCCc-ccccccCcCchhhhccccCchHHhc
Confidence                      49999 9999999999999999999 67776

>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]

Probab=81.10  E-value=2.6  Score=46.17  Aligned_cols=42  Identities=38%  Similarity=0.903  Sum_probs=36.7

Q ss_pred             hhhcCCCcccCCccccchhhhhhhcCCccCC-----CCcc--cCCCCCCC
Q 014381          234 AAKHNKGCHCKKSGCLKKYCECFQANILCSE-----NCRC--LDCKNFEG  276 (425)
Q Consensus       234 ~~k~~kGC~CKKS~CLK~YCeCF~ag~~Cs~-----~CkC--~~CkN~e~  276 (425)
                      ..|...||.|+ -.|.--.|-|-++||+|-.     -|-|  .+|.|.++
T Consensus       303 nSReeCGCsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp~G  351 (640)
T KOG3813|consen  303 NSREECGCSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNPEG  351 (640)
T ss_pred             hhHHhhCCccc-ceeChhhcchhccCceEeecCcccccccchhhcCCCcc
Confidence            45677999999 8999999999999999964     4878  69999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	425
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 29/114 (25%)

Query: 33  PEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAHM 92
            +   +   +    +       P   P    +   P Q    ++ Q  P ++  + Q   
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 93  RSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGK 146
                  P  Q  P  +      P     LP P L    +        +N    
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 180

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 21/140 (15%), Positives = 35/140 (25%), Gaps = 3/140 (2%)

Query: 32  LPEQSVKSQSSQPQSHSPLQPQPPKSQPQVQSKVASPSQSQPLVRLQLLPPSSQPHVQAH 91
           +P Q       Q Q  +P Q Q  +   Q  + +         +         QP V   
Sbjct: 47  MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP--NAYMQPQVPVQ 104

Query: 92  MRSPSQAMPQWQARPQHVRMVNRVPHPVHKLPLPTLPPGKQESPRSRPRANTDGKDGTPK 151
           M +P Q   Q  A P + +    +   +  +          E P                
Sbjct: 105 MGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIP 164

Query: 152 KQKQCNCR-NSRCLKLYCEC 170
            ++       S     Y   
Sbjct: 165 PERMLVPSELSNASPDYIRS 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	425
2lua_A	52	Protein MALE-specific lethal-2; DNA binding protei	96.66
2lua_A	52	Protein MALE-specific lethal-2; DNA binding protei	96.32

>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}

Probab=96.66  E-value=0.001  Score=50.62  Aligned_cols=38  Identities=32%  Similarity=0.924  Sum_probs=32.6

Q ss_pred             CCCcccCCc-------cccchhhhhhhcCCccCCCCcccCCCCCCC
Q 014381          238 NKGCHCKKS-------GCLKKYCECFQANILCSENCRCLDCKNFEG  276 (425)
Q Consensus       238 ~kGC~CKKS-------~CLK~YCeCF~ag~~Cs~~CkC~~CkN~e~  276 (425)
                      .++|.|..+       .|-...|.||.++..|+ +|+|.+|+|-..
T Consensus         4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~GCkNPhk   48 (52)
T 2lua_A            4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCVGCKNPHK   48 (52)
T ss_dssp             CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCSSCCCSCC
T ss_pred             CcccccCcccCCCCceeEcCCccceecCCCccC-CCEecCcCCCCc
Confidence            468888544       79999999999999998 799999999643

>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}

Probab=96.32  E-value=0.0021  Score=48.92  Aligned_cols=37  Identities=35%  Similarity=0.977  Sum_probs=31.5

Q ss_pred             CccccccCc-------cccccchhhhcCCCCCCCCCCCCCCCCc
Q 014381          153 QKQCNCRNS-------RCLKLYCECFAAGIYCDGCNCVNCHNNV  189 (425)
Q Consensus       153 ~K~CnCKKS-------kCLKLYCECFaaG~~C~~CnC~nC~N~~  189 (425)
                      ++.|.|..+       .|--..|.||.+|.-|.+|+|.+|+|..
T Consensus         4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~~C~C~GCkNPh   47 (52)
T 2lua_A            4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVGCKNPH   47 (52)
T ss_dssp             CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCSSCCCSSCCCSC
T ss_pred             CcccccCcccCCCCceeEcCCccceecCCCccCCCEecCcCCCC
Confidence            456777544       6888999999999999999999999964

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00