Citrus Sinensis ID: 014382
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 425 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FN03 | 440 | Ultraviolet-B receptor UV | yes | no | 0.974 | 0.940 | 0.821 | 0.0 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | yes | no | 0.708 | 0.284 | 0.375 | 1e-50 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | yes | no | 0.708 | 0.284 | 0.372 | 1e-50 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | yes | no | 0.708 | 0.284 | 0.368 | 3e-50 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | no | 0.715 | 0.289 | 0.378 | 2e-48 | |
| Q15751 | 4861 | Probable E3 ubiquitin-pro | no | no | 0.804 | 0.070 | 0.342 | 3e-46 | |
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | no | no | 0.847 | 0.074 | 0.322 | 2e-41 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | no | no | 0.821 | 0.072 | 0.326 | 7e-41 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | no | no | 0.642 | 0.055 | 0.352 | 3e-40 | |
| Q9R0X5 | 1001 | X-linked retinitis pigmen | no | no | 0.68 | 0.288 | 0.343 | 1e-38 |
| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function desciption |
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Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/420 (82%), Positives = 376/420 (89%), Gaps = 6/420 (1%)
Query: 1 MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRL 60
MAE AA E AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR
Sbjct: 1 MAEDMAADE----VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 56
Query: 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA 120
SPTQLSALDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKA
Sbjct: 57 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 116
Query: 121 LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180
LH +R+KQIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKM
Sbjct: 117 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKM 176
Query: 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240
VAAGAEH+ AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWR
Sbjct: 177 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWR 234
Query: 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD 300
HTISVS SG LY+YGWSKYGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSD
Sbjct: 235 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 294
Query: 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGR 360
GKLYGWGWNKFGQVGVG+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGR
Sbjct: 295 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 354
Query: 361 GTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDT 420
GTNGQLG GES DRN PKIIE LS+DG+ GQ+I SS DPSSGK+WVSP+ERYAVVPD+T
Sbjct: 355 GTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET 414
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UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function description |
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| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 425 | ||||||
| 225438373 | 445 | PREDICTED: probable E3 ubiquitin-protein | 0.957 | 0.914 | 0.860 | 0.0 | |
| 449457319 | 438 | PREDICTED: probable E3 ubiquitin-protein | 0.952 | 0.924 | 0.835 | 0.0 | |
| 297797389 | 440 | UVB-resistance 8 [Arabidopsis lyrata sub | 0.974 | 0.940 | 0.823 | 0.0 | |
| 15237540 | 440 | protein UV-B resistance 8 [Arabidopsis t | 0.974 | 0.940 | 0.821 | 0.0 | |
| 5478530 | 440 | UVB-resistance protein UVR8 [Arabidopsis | 0.974 | 0.940 | 0.821 | 0.0 | |
| 224093583 | 444 | predicted protein [Populus trichocarpa] | 0.981 | 0.939 | 0.805 | 0.0 | |
| 312282233 | 440 | unnamed protein product [Thellungiella h | 0.962 | 0.929 | 0.829 | 0.0 | |
| 255563857 | 437 | uvb-resistance protein uvr8, putative [R | 0.969 | 0.942 | 0.821 | 0.0 | |
| 383280368 | 406 | Chain A, Crystal Structure Of Arabidopsi | 0.952 | 0.997 | 0.819 | 0.0 | |
| 147782117 | 423 | hypothetical protein VITISV_010346 [Viti | 0.936 | 0.940 | 0.822 | 0.0 |
| >gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera] gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/409 (86%), Positives = 378/409 (92%), Gaps = 2/409 (0%)
Query: 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH 71
S +AP R VLLISAGASHSVALLSGN+VCSWGRGEDGQLGHGDAEDRLSPT LSALDGH
Sbjct: 9 SEVSAPVRRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGH 68
Query: 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC 131
E+VSVTCGADHTTAYSES QVYSWGWGDFGRLGHGNSSDLFTP PIKALH LR+KQIAC
Sbjct: 69 EVVSVTCGADHTTAYSESFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQIAC 128
Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV 191
GDSHCLAVT++GEVQSWGRNQNGQLGLGTTEDSLVPQK+QAF+GVS+KMVAAGAEH+ AV
Sbjct: 129 GDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTAAV 188
Query: 192 AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251
EDGELYGWGWGRYGNLGLGDRNDRL+PEKV+TV + KMV VACGWRHTISVSSSG L
Sbjct: 189 TEDGELYGWGWGRYGNLGLGDRNDRLVPEKVSTV--EGVKMVKVACGWRHTISVSSSGGL 246
Query: 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311
Y+YGWSKYGQLGHGDF+DHL P +LEAL+E+ IS+ISGGWRHTMA+TSDGKLYGWGWNKF
Sbjct: 247 YTYGWSKYGQLGHGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 371
GQVGVGDNVDHCSPVQVKFP +QKVV ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES
Sbjct: 307 GQVGVGDNVDHCSPVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 366
Query: 372 SDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDT 420
DRN PK+IE LS DGS GQ I +SK DPS+G+ WVSPSERYAVVPD+T
Sbjct: 367 IDRNIPKMIEVLSADGSGGQQIETSKVDPSTGRIWVSPSERYAVVPDET 415
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana] gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana] gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana] gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa] gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis] gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|383280368|pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) gi|383280369|pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) | Back alignment and taxonomy information |
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| >gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 425 | ||||||
| TAIR|locus:2163986 | 440 | UVR8 "UVB-RESISTANCE 8" [Arabi | 0.945 | 0.913 | 0.836 | 9.5e-192 | |
| TAIR|locus:504956339 | 434 | RUG1 "AT5G08710" [Arabidopsis | 0.823 | 0.806 | 0.342 | 3.5e-52 | |
| UNIPROTKB|Q5GLZ8 | 1057 | HERC4 "Probable E3 ubiquitin-p | 0.708 | 0.284 | 0.375 | 4.3e-51 | |
| ZFIN|ZDB-GENE-090313-139 | 1046 | herc3 "hect domain and RLD 3" | 0.705 | 0.286 | 0.379 | 5.3e-51 | |
| RGD|1310971 | 1057 | Herc4 "HECT and RLD domain con | 0.708 | 0.284 | 0.372 | 5.5e-51 | |
| UNIPROTKB|F1NBC5 | 1050 | HERC3 "Uncharacterized protein | 0.715 | 0.289 | 0.398 | 6.9e-51 | |
| MGI|MGI:1914595 | 1057 | Herc4 "hect domain and RLD 4" | 0.708 | 0.284 | 0.368 | 9.1e-51 | |
| UNIPROTKB|E2RFW5 | 1049 | HERC4 "Uncharacterized protein | 0.708 | 0.286 | 0.372 | 1.4e-50 | |
| UNIPROTKB|E2RFV1 | 1057 | HERC4 "Uncharacterized protein | 0.708 | 0.284 | 0.372 | 1.5e-50 | |
| UNIPROTKB|E2RMB0 | 1050 | HERC3 "Uncharacterized protein | 0.715 | 0.289 | 0.385 | 1.9e-50 |
| TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1858 (659.1 bits), Expect = 9.5e-192, P = 9.5e-192
Identities = 338/404 (83%), Positives = 369/404 (91%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 13 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 72
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 73 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 132
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 133 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 192
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGW
Sbjct: 193 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 250
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
SKYGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct: 251 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310
Query: 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 376
G+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 370
Query: 377 PKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDT 420
PKIIE LS+DG+ GQ+I SS DPSSGK+WVSP+ERYAVVPD+T
Sbjct: 371 PKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET 414
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| TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5GLZ8 HERC4 "Probable E3 ubiquitin-protein ligase HERC4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-090313-139 herc3 "hect domain and RLD 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RFW5 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RFV1 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RMB0 HERC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FN03 | UVR8_ARATH | No assigned EC number | 0.8214 | 0.9741 | 0.9409 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 425 | |||
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 5e-51 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 2e-42 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 2e-42 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 2e-28 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-28 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-17 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 3e-16 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-15 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 4e-14 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 8e-13 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 1e-08 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-07 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 7e-07 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-06 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 1e-05 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 8e-04 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 0.002 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 5e-51
Identities = 106/370 (28%), Positives = 161/370 (43%), Gaps = 34/370 (9%)
Query: 40 VCSWGRGEDGQLGHG-DAEDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSW 96
V SWG +LG G D P D I+ + CG +H+ +YSW
Sbjct: 70 VYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGN-LYSW 128
Query: 97 GWGDFGRLG---------HGNSSDLFT-----------PLPIKALHSLRVKQIACGDSHC 136
G D G LG N F P A LRV ++ACG
Sbjct: 129 GDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEIS 188
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDS--LVPQKLQAFEGVS-IKMVAAGAEHSVAVAE 193
+ +T +G V SWG + G+LG G+ ++S Q I +AAGA+H +A+
Sbjct: 189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTN 248
Query: 194 DGELYGWGWGRYGNLGLGDRNDRLIPEKVA-TVDLQREKMVMVACGWRHTISVSSSGRLY 252
+G++YGWG + G LG + V ++ K V ACG H++++ G +Y
Sbjct: 249 EGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYV--ACGKDHSLALDEDGEIY 306
Query: 253 SYGWSKYGQLGHG----DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308
++G + +GQLG G P + L I IS G H++ + DG LY +G
Sbjct: 307 AWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366
Query: 309 NKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGH 368
GQ+G+ + + K + K+ Q++CG H +A T+ +V+SWG G +G LG+
Sbjct: 367 GDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGN 426
Query: 369 GESSDRNSPK 378
G
Sbjct: 427 GPKEADVLVP 436
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Length = 476 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 425 | |||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.94 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.91 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.27 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.25 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 99.14 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.11 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 99.1 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.1 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 96.09 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 95.78 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 94.65 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 94.59 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 93.54 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 90.53 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.88 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 88.18 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 87.39 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 87.12 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 86.27 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 85.28 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 84.42 | |
| PLN02153 | 341 | epithiospecifier protein | 83.4 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 83.09 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 82.87 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 82.42 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 81.61 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 81.54 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 81.06 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 80.95 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 80.68 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 80.25 |
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=388.45 Aligned_cols=363 Identities=31% Similarity=0.541 Sum_probs=294.2
Q ss_pred ccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCc-cCCeeecCC--CCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCC
Q 014382 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (425)
Q Consensus 26 ~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g 102 (425)
.-..|...++.-..||+||.|...+||++..+.. ..|++.+.. +...|++++||+.|+++|++| |+||+||.|..|
T Consensus 56 ~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G 134 (476)
T COG5184 56 IINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDG 134 (476)
T ss_pred hcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccc
Confidence 3456667888999999999999999999987654 889988877 667899999999999999999 999999999999
Q ss_pred CCCCCCC----------------CCcccceeecc----cCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCC
Q 014382 103 RLGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (425)
Q Consensus 103 ~lg~~~~----------------~~~~~p~~v~~----~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 162 (425)
+||+... .....|..+.. ....+++++.||++++++|+++|+||.||.+..+.++.+...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 9998761 12345665554 234489999999999999999999999999888888877444
Q ss_pred Cccc----ceeeeccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEec
Q 014382 163 DSLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG 238 (425)
Q Consensus 163 ~~~~----p~~~~~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g 238 (425)
.... ++++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+ +.-..|+.|+||
T Consensus 215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~-f~i~~i~~vacG 292 (476)
T COG5184 215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP-FAIRNIKYVACG 292 (476)
T ss_pred ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCCh-hhhhhhhhcccC
Confidence 3322 3333222 457999999999999999999999999999999998877666555555322 122357889999
Q ss_pred CceEEEEecCCCEEEecCCCCCcCCCCCCC----CcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCc
Q 014382 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (425)
Q Consensus 239 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqL 314 (425)
.+|+++|+++|++|+||.|.+|||+.++.. ....|.....+....|.+|++|..|+++|..+|.||.||++..+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 999999999999999999999999998221 2334555566667779999999999999999999999999999999
Q ss_pred ccCCCC--CcccceEeecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCC-CCCCCCeEeeecccCCCceE
Q 014382 315 GVGDNV--DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDGSKGQ 391 (425)
Q Consensus 315 G~~~~~--~~~~p~~i~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~-~~~~~p~~~~~~~~~~~~~~ 391 (425)
|..+.. ....|..+ ....++.+++||..|.++.+.+|+||+||+|++||||+|+. .+...|+.+.....++....
T Consensus 373 g~~~~~~~~~~~~~~l--s~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i 450 (476)
T COG5184 373 GIQEEITIDVSTPTKL--SVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNII 450 (476)
T ss_pred cCcccceeecCCcccc--ccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceE
Confidence 998844 33444443 33467999999999999999999999999999999999986 45777888776555665544
Q ss_pred Ee
Q 014382 392 NI 393 (425)
Q Consensus 392 ~~ 393 (425)
-.
T Consensus 451 ~~ 452 (476)
T COG5184 451 LA 452 (476)
T ss_pred Ee
Confidence 33
|
|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 425 | ||||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 0.0 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 0.0 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 0.0 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 0.0 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 6e-41 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 4e-13 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 1e-37 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 2e-09 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 1e-37 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 2e-09 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 2e-26 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 2e-22 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 3e-19 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 6e-07 | ||
| 3qhy_B | 282 | Structural, Thermodynamic And Kinetic Analysis Of T | 5e-07 | ||
| 1jtd_B | 273 | Crystal Structure Of Beta-Lactamase Inhibitor Prote | 5e-07 |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 | Back alignment and structure |
| >pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
Score = 493 bits (1272), Expect = e-175
Identities = 333/404 (82%), Positives = 363/404 (89%), Gaps = 2/404 (0%)
Query: 8 SEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA 67
AA AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSA
Sbjct: 5 DMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 64
Query: 68 LDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVK 127
LDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+K
Sbjct: 65 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 124
Query: 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187
QIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184
Query: 188 SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSS 247
+ AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSY 242
Query: 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307
SG LY+YGWSKYGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWG
Sbjct: 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 302
Query: 308 WNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLG 367
WNKFGQVGVG+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG
Sbjct: 303 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Query: 368 HGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 411
GES DRN PKIIE LS+DG+ GQ+I SS DPSSGK+WVSP+E
Sbjct: 363 IGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 425 | |||
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.83 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.49 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.89 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.72 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.58 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 96.34 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.16 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 96.01 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 94.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.74 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.58 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.4 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.39 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 93.59 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.58 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 93.02 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 92.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 92.91 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 92.41 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 91.9 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 91.79 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.07 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 90.57 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 90.46 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 90.39 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 89.33 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 88.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 88.65 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 88.29 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 88.23 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 86.92 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 86.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 86.56 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 86.41 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 85.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 85.6 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 85.1 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 84.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 84.47 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 83.66 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 82.75 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 82.73 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 82.26 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 81.94 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 81.57 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 80.84 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 80.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 80.64 |
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-82 Score=622.61 Aligned_cols=398 Identities=83% Similarity=1.410 Sum_probs=368.3
Q ss_pred cCCCCCCCCeEEEeccCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCC
Q 014382 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (425)
Q Consensus 12 ~~~~~~~~~i~~i~~g~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g 91 (425)
++..+++.+|++|+||..|+++|++||+||+||+|.+||||.+...++..|.++..+.+.+|++|+||..|+++|+++++
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 44556778999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred EEEEEeCCCCCCCCCCCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCcccceeee
Q 014382 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (425)
Q Consensus 92 ~v~~wG~n~~g~lg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 171 (425)
+||+||.|.+||||.++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.++......|+++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCCcceeeeeeeecCCCeEEEEEecCceEEEEecCCCE
Q 014382 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (425)
Q Consensus 172 ~~~~~~i~~i~~G~~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~g~~~~~~lt~~G~v 251 (425)
.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.......|.++..+. ..+|++|+||.+|+++|+++|+|
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCE
Confidence 9988899999999999999999999999999999999999988888888886543 67899999999999999999999
Q ss_pred EEecCCCCCcCCCCCCCCcccceeeccccCCcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCCcccceEeecC
Q 014382 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (425)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~~~~p~~i~~~ 331 (425)
|+||.|.+||||+++......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.++
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceEEeeccccCCCCCcccccCCc
Q 014382 332 LDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 411 (425)
Q Consensus 332 ~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (425)
...+|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|.+++.+..++....+++.+.+.+..++.|++|+|
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999876
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 425 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 9e-48 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-42 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 7e-24 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 8e-24 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 4e-23 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-21 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 9e-16 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 6e-12 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 8e-12 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 2e-08 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 8e-07 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 9e-05 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 166 bits (420), Expect = 9e-48
Identities = 109/387 (28%), Positives = 163/387 (42%), Gaps = 22/387 (5%)
Query: 27 GASHSVALLSGNIVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTA 85
SH +V + G+G+ GQLG G+ +R P +S + +V G HT
Sbjct: 4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVC 61
Query: 86 YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEV 145
S+S QVYS+G D G LG S + +P K +V Q++ GDSH A+T +G V
Sbjct: 62 LSKS-GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRV 120
Query: 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204
WG ++ +G E + V + VA+G +H V + DG+LY G G
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180
Query: 205 YGNLGLGDRNDRLIPEKVATVDLQRE--------------KMVMVACGWRHTISVSSSGR 250
G LG + L + CG T ++S G
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240
Query: 251 LYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308
+Y +G S Y QLG SGG HT+ + S+GK Y G
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300
Query: 309 NKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGH 368
++G++G+G+ + S + V ++CG AVT+ VF+WG GTN QLG
Sbjct: 301 AEYGRLGLGEGAEEKS-IPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT 359
Query: 369 GESSDRNSPKIIEPLSLDGSKGQNIAS 395
G+ D SP + L+ +++S
Sbjct: 360 GQDEDAWSPVEMMGKQLENRVVLSVSS 386
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 425 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.17 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.48 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.55 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.57 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 92.61 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 90.34 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 89.29 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 88.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 85.61 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 84.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 82.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 82.91 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 82.75 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 81.4 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-61 Score=468.21 Aligned_cols=366 Identities=31% Similarity=0.482 Sum_probs=307.8
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCC-CccCCeeecCCCCCcEEEEEcCCCeEEEEEcCCCEEEEEeCCCCCCCCC
Q 014382 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAE-DRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGH 106 (425)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~-~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~~g~v~~wG~n~~g~lg~ 106 (425)
-.|++|++++|+||+||.|.+||||++... .+..|.+|..+. +|++|+||..|+++|+++ |+||+||.|.+||||+
T Consensus 5 ~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~-G~vy~wG~n~~GQLG~ 81 (401)
T d1a12a_ 5 VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKS-GQVYSFGCNDEGALGR 81 (401)
T ss_dssp CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCS
T ss_pred eeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCC-CEEEEEeCCCCCCCCc
Confidence 369999999999999999999999998664 588999998876 599999999999999999 9999999999999999
Q ss_pred CCCCCcccceeecccCCCCEEEEEeCCCEEEEEEcCCCEEEEeCCCCCccCCCCCCCc-ccceeeeccCCceEEEEEeCC
Q 014382 107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQKLQAFEGVSIKMVAAGA 185 (425)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~-~~p~~~~~~~~~~i~~i~~G~ 185 (425)
++..+...|.+.......+|++|+||..|+++++++|+||+||.+...+.+....... ..+..+......+|++|+||.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~ 161 (401)
T d1a12a_ 82 DTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 161 (401)
T ss_dssp CCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred ccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence 9888888888888777889999999999999999999999999876655544333222 223333344456899999999
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCC-----------cceeeeeeee---cCCCeEEEEEecCceEEEEecCCCE
Q 014382 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-----------LIPEKVATVD---LQREKMVMVACGWRHTISVSSSGRL 251 (425)
Q Consensus 186 ~~~~~L~~~g~vy~~G~n~~gqlg~~~~~~~-----------~~p~~v~~~~---~~~~~i~~i~~g~~~~~~lt~~G~v 251 (425)
.|+++++++|++|+||.|.+||||....... ..|..+.... ....+|++|+||.+|+++|+++|+|
T Consensus 162 ~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v 241 (401)
T d1a12a_ 162 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV 241 (401)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred cceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeE
Confidence 9999999999999999999999997654221 1233222111 1235799999999999999999999
Q ss_pred EEecCCCCCcCCCCCCCCcccceeeccccC--CcEEEEecCCceEEEEeCCCcEEEeeeCCCCCcccCCCCC-cccceEe
Q 014382 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD-HCSPVQV 328 (425)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqLG~~~~~~-~~~p~~i 328 (425)
|.||.|.++++|.........+..+..+.. ..++++++|..|+++++++|+||+||.|.+||||.++... ...|.++
T Consensus 242 ~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i 321 (401)
T d1a12a_ 242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI 321 (401)
T ss_dssp EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC
T ss_pred eeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEc
Confidence 999999999999998887777777665543 5599999999999999999999999999999999986443 3456666
Q ss_pred ecCCCCcEEEEEcCCCeeEEEeCCCCEEEeeCCCCCccCCCCCCCCCCCeEeeecccCCCceEEeecccc
Q 014382 329 KFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKY 398 (425)
Q Consensus 329 ~~~~~~~i~~i~~G~~~~~~l~~~g~vy~wG~n~~gqLG~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 398 (425)
+. ..+|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|.+++.+...+.+...++++..
T Consensus 322 ~~--~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ 389 (401)
T d1a12a_ 322 SR--LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQ 389 (401)
T ss_dssp CS--SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSS
T ss_pred CC--CCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccc
Confidence 54 367999999999999999999999999999999999999999999999877777777777776654
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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