Citrus Sinensis ID: 014408

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MIKLMDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
cccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHcccccccccccccEEEccccHHHHHHHHHHHHHccccEEEcccccccccccccccccEEEEcccccccccccccccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccccccEEEEccccEEEccccccccccccccccccccccccccEEEEEEEEEccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccEccHHHHHHccccHHHHccccccEEEccccHHHHHHHHHHHHHccccEEEcccccccccccccccccEEEEHHHHHHEEEEcccccEEEEccHHHHHHHHHHHHHcccEccccccccccEEEcccccccccccEEEEEccccccEEEEEEEcccccEEEcccccccccccccHHHEEEcccccEEEEEEEEEEccccccHEEEEEEEcccHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccccc
MIKLMDKWRITNHLLKHSSkllfdrrlsanshnSVFRSALECSESLVKrgfgnastiryrcfgseatkFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYrgssklllqprttnEVSQILKYCNSRLLavvpqggntglvggsvpVFDEVIINMgsmnniitfdkgsgvlvceAGCILENLVSflddhgfimpldlgakgscqiggnvstnagglRLVRYGSLHGNVLGLEAVLANGDVIDMLGtlrkdntgydlkhlfigsegslgIVTKvsihtppklssvnLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEgvrnpfsssmhNFYVLIETtgseesydREKLEAFLLSSmegglisdgviAQDINQASSFWRirevpnfnsiyypcvqdylnl
miklmdkwriTNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERnaafstlnseDVSYFKELLgeksviqdEDVLLAANEDWMRKYRgssklllqprtTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETtgseesydREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRevpnfnsiyypcvqdylnl
MIKLMDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
****MDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYL**
*******WRITNHLLKHSSKL********************************************************LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
MIKLMDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
MIKLMDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIKLMDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGSEATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSIYYPCVQDYLNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
O23240 559 D-2-hydroxyglutarate dehy yes no 0.821 0.624 0.794 1e-162
B8B7X6 559 Probable D-2-hydroxygluta N/A no 0.861 0.654 0.691 1e-150
Q7XI14 559 Probable D-2-hydroxygluta yes no 0.861 0.654 0.691 1e-149
A1L258 533 D-2-hydroxyglutarate dehy yes no 0.776 0.619 0.553 1e-103
Q8N465 521 D-2-hydroxyglutarate dehy yes no 0.783 0.639 0.548 1e-103
P46681 530 D-lactate dehydrogenase [ yes no 0.832 0.667 0.495 1e-102
Q1JPD3 544 D-2-hydroxyglutarate dehy yes no 0.849 0.663 0.517 1e-102
P84850 535 D-2-hydroxyglutarate dehy yes no 0.929 0.738 0.475 1e-100
Q8CIM3 535 D-2-hydroxyglutarate dehy yes no 0.776 0.616 0.535 1e-100
P39976 496 D-lactate dehydrogenase [ no no 0.802 0.687 0.504 2e-97
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=D2HGDH PE=1 SV=3 Back     alignment and function desciption
 Score =  570 bits (1468), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/351 (79%), Positives = 313/351 (89%), Gaps = 2/351 (0%)

Query: 58  RYRCFGSEATKF-ERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGS 116
           +Y+CFGS A    +RN  FS+L+S+DVSYFKE+LGEK+V++D++ L  AN DWM KY+GS
Sbjct: 74  QYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKGS 133

Query: 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176
           SKL+L P+ T EVSQIL+YC+SR LAVVPQGGNTGLVGGSVPVFDEVI+N+G MN I++F
Sbjct: 134 SKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNTGLVGGSVPVFDEVIVNVGLMNKILSF 193

Query: 177 DKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236
           D+ SGVLVCEAGCILENL +FLD  GFIMPLDLGAKGSC IGGNVSTNAGGLRL+RYGSL
Sbjct: 194 DEVSGVLVCEAGCILENLATFLDTKGFIMPLDLGAKGSCHIGGNVSTNAGGLRLIRYGSL 253

Query: 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSV 296
           HG VLGLEAV ANG+V+DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSI T PKLSSV
Sbjct: 254 HGTVLGLEAVTANGNVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTQPKLSSV 313

Query: 297 NLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNF 356
           NLAF+ACKDY SCQKLL EAKR LGEILSAFEFLDN SMDLVL +L+GVRNP SSS  NF
Sbjct: 314 NLAFIACKDYLSCQKLLVEAKRNLGEILSAFEFLDNNSMDLVLNHLDGVRNPVSSS-ENF 372

Query: 357 YVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRE 407
           Y+LIETTGS+E+ DREKLEAFLL S+E GL+SDGVIAQDINQASSFWRIRE
Sbjct: 373 YILIETTGSDETNDREKLEAFLLKSLEKGLVSDGVIAQDINQASSFWRIRE 423
Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate. May be involved in the catabolism of propionyl-CoA derived from beta-oxidation.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: -
>sp|B8B7X6|D2HDH_ORYSI Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp. indica GN=D2HGDH PE=3 SV=1 Back     alignment and function description
>sp|Q7XI14|D2HDH_ORYSJ Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=D2HGDH PE=3 SV=1 Back     alignment and function description
>sp|A1L258|D2HDH_DANRE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio GN=d2hgdh PE=2 SV=1 Back     alignment and function description
>sp|Q8N465|D2HDH_HUMAN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=D2HGDH PE=1 SV=3 Back     alignment and function description
>sp|P46681|DLD2_YEAST D-lactate dehydrogenase [cytochrome] 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD2 PE=1 SV=1 Back     alignment and function description
>sp|Q1JPD3|D2HDH_BOVIN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=D2HGDH PE=2 SV=2 Back     alignment and function description
>sp|P84850|D2HDH_RAT D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=D2hgdh PE=3 SV=1 Back     alignment and function description
>sp|Q8CIM3|D2HDH_MOUSE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=D2hgdh PE=2 SV=3 Back     alignment and function description
>sp|P39976|DLD3_YEAST D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DLD3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
224097077 530 predicted protein [Populus trichocarpa] 0.936 0.750 0.780 1e-179
225431259 552 PREDICTED: d-2-hydroxyglutarate dehydrog 0.84 0.646 0.826 1e-174
255560988 566 d-lactate dehydrognease 2, putative [Ric 0.84 0.630 0.804 1e-168
449457624 554 PREDICTED: d-2-hydroxyglutarate dehydrog 0.924 0.709 0.717 1e-161
356495376 633 PREDICTED: d-2-hydroxyglutarate dehydrog 0.823 0.552 0.792 1e-161
297802308 559 FAD linked oxidase family protein [Arabi 0.948 0.720 0.697 1e-160
4006920524 actin interacting protein [Arabidopsis t 0.821 0.666 0.794 1e-160
42567457 559 D-2-hydroxyglutarate dehydrogenase [Arab 0.821 0.624 0.794 1e-160
297735075435 unnamed protein product [Vitis vinifera] 0.701 0.685 0.879 1e-153
357119197 621 PREDICTED: probable D-2-hydroxyglutarate 0.934 0.639 0.635 1e-149
>gi|224097077|ref|XP_002310828.1| predicted protein [Populus trichocarpa] gi|222853731|gb|EEE91278.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/406 (78%), Positives = 353/406 (86%), Gaps = 8/406 (1%)

Query: 5   MDKWRITNHLLKHSSKLLFDRRLSANSHNSVFRSALECSESLVKRGFGNASTIRYRCFGS 64
           MDK+++T+ LLK S K L +R+L++N  N ++RS      S +  G G  +   YR FGS
Sbjct: 1   MDKYKVTHRLLKQSIKSLVNRQLTSN--NPIYRSI-----SALPLGNGGRNPQLYRSFGS 53

Query: 65  EATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPR 124
            ATK ERN +FS+LNS+DVSYFK +LGEK+V+QDED L  AN DWM KY+GSSKLLL PR
Sbjct: 54  LATKVERNPSFSSLNSDDVSYFKGVLGEKNVVQDEDRLETANIDWMHKYKGSSKLLLLPR 113

Query: 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLV 184
            T EVS+IL+YCNSR LAVVPQGGNTGLVGGSVPVFDEVIIN GSMN II FDK SG+LV
Sbjct: 114 NTEEVSKILEYCNSRRLAVVPQGGNTGLVGGSVPVFDEVIINAGSMNKIIAFDKVSGILV 173

Query: 185 CEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244
           CEAGCILENL+S+LD+ GFIMPLDLGAKGSCQIGGNVSTNAGGLR VRYGSLHGNVLGLE
Sbjct: 174 CEAGCILENLISYLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRFVRYGSLHGNVLGLE 233

Query: 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK 304
           AVLANGDV+DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSI TPPKLSSVN+AFLAC+
Sbjct: 234 AVLANGDVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTPPKLSSVNIAFLACE 293

Query: 305 DYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTG 364
           DY SCQKLL EAKRKLGEILSAFEFLD+ +MDLVL +LEGVRNP  S++HNFYVLIETTG
Sbjct: 294 DYLSCQKLLSEAKRKLGEILSAFEFLDSHAMDLVLNHLEGVRNPLPSAVHNFYVLIETTG 353

Query: 365 SEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRE-VP 409
           S+ESYD+EKLEAFLL SME GLISDGV+AQDINQASSFWRIRE VP
Sbjct: 354 SDESYDKEKLEAFLLHSMESGLISDGVLAQDINQASSFWRIREGVP 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431259|ref|XP_002268002.1| PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255560988|ref|XP_002521506.1| d-lactate dehydrognease 2, putative [Ricinus communis] gi|223539184|gb|EEF40777.1| d-lactate dehydrognease 2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449457624|ref|XP_004146548.1| PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449500041|ref|XP_004160987.1| PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495376|ref|XP_003516554.1| PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|297802308|ref|XP_002869038.1| FAD linked oxidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314874|gb|EFH45297.1| FAD linked oxidase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4006920|emb|CAB16815.1| actin interacting protein [Arabidopsis thaliana] gi|7270588|emb|CAB80306.1| actin interacting protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42567457|ref|NP_568003.2| D-2-hydroxyglutarate dehydrogenase [Arabidopsis thaliana] gi|42573191|ref|NP_974692.1| D-2-hydroxyglutarate dehydrogenase [Arabidopsis thaliana] gi|294956519|sp|O23240.3|D2HDH_ARATH RecName: Full=D-2-hydroxyglutarate dehydrogenase, mitochondrial; Short=AtD-2HGDH; Flags: Precursor gi|332661251|gb|AEE86651.1| D-2-hydroxyglutarate dehydrogenase [Arabidopsis thaliana] gi|332661252|gb|AEE86652.1| D-2-hydroxyglutarate dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297735075|emb|CBI17437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357119197|ref|XP_003561332.1| PREDICTED: probable D-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2115230 559 D2HGDH "D-2-hydroxyglutarate d 0.821 0.624 0.794 5e-147
CGD|CAL0004623 527 AIP2 [Candida albicans (taxid: 0.814 0.656 0.583 1.8e-103
DICTYBASE|DDB_G0270500 497 d2hgdh "D-2-hydroxyglutarate d 0.814 0.696 0.557 1.8e-103
UNIPROTKB|Q5AEG8 527 AIP2 "Putative uncharacterized 0.814 0.656 0.583 1.8e-103
UNIPROTKB|F1P474 488 D2HGDH "Uncharacterized protei 0.783 0.682 0.572 5e-99
ZFIN|ZDB-GENE-070112-482 533 d2hgdh "D-2-hydroxyglutarate d 0.774 0.617 0.558 1.2e-95
ASPGD|ASPL0000009987 557 AN11045 [Emericella nidulans ( 0.790 0.603 0.558 3.3e-95
SGD|S000002337 530 DLD2 "D-lactate dehydrogenase" 0.832 0.667 0.495 6.1e-94
UNIPROTKB|Q8N465 521 D2HGDH "D-2-hydroxyglutarate d 0.783 0.639 0.548 1e-93
UNIPROTKB|Q1JPD3 544 D2HGDH "D-2-hydroxyglutarate d 0.774 0.604 0.549 7e-93
TAIR|locus:2115230 D2HGDH "D-2-hydroxyglutarate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1436 (510.6 bits), Expect = 5.0e-147, P = 5.0e-147
 Identities = 279/351 (79%), Positives = 313/351 (89%)

Query:    58 RYRCFGSEATKF-ERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGS 116
             +Y+CFGS A    +RN  FS+L+S+DVSYFKE+LGEK+V++D++ L  AN DWM KY+GS
Sbjct:    74 QYKCFGSSAASLIQRNPLFSSLDSKDVSYFKEILGEKNVVEDKERLETANTDWMHKYKGS 133

Query:   117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITF 176
             SKL+L P+ T EVSQIL+YC+SR LAVVPQGGNTGLVGGSVPVFDEVI+N+G MN I++F
Sbjct:   134 SKLMLLPKNTQEVSQILEYCDSRRLAVVPQGGNTGLVGGSVPVFDEVIVNVGLMNKILSF 193

Query:   177 DKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236
             D+ SGVLVCEAGCILENL +FLD  GFIMPLDLGAKGSC IGGNVSTNAGGLRL+RYGSL
Sbjct:   194 DEVSGVLVCEAGCILENLATFLDTKGFIMPLDLGAKGSCHIGGNVSTNAGGLRLIRYGSL 253

Query:   237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSV 296
             HG VLGLEAV ANG+V+DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSI T PKLSSV
Sbjct:   254 HGTVLGLEAVTANGNVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSILTQPKLSSV 313

Query:   297 NLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNF 356
             NLAF+ACKDY SCQKLL EAKR LGEILSAFEFLDN SMDLVL +L+GVRNP SSS  NF
Sbjct:   314 NLAFIACKDYLSCQKLLVEAKRNLGEILSAFEFLDNNSMDLVLNHLDGVRNPVSSS-ENF 372

Query:   357 YVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRE 407
             Y+LIETTGS+E+ DREKLEAFLL S+E GL+SDGVIAQDINQASSFWRIRE
Sbjct:   373 YILIETTGSDETNDREKLEAFLLKSLEKGLVSDGVIAQDINQASSFWRIRE 423
GO:0003824 "catalytic activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0051990 "(R)-2-hydroxyglutarate dehydrogenase activity" evidence=IDA
CGD|CAL0004623 AIP2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270500 d2hgdh "D-2-hydroxyglutarate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEG8 AIP2 "Putative uncharacterized protein DLD2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|F1P474 D2HGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070112-482 d2hgdh "D-2-hydroxyglutarate dehydrogenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000009987 AN11045 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000002337 DLD2 "D-lactate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N465 D2HGDH "D-2-hydroxyglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JPD3 D2HGDH "D-2-hydroxyglutarate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C1X2YN53_SCHPO1, ., 1, ., 2, ., 40.50970.82110.6634yesno
Q8N465D2HDH_HUMAN1, ., 1, ., 9, 9, ., -0.54890.78350.6391yesno
Q1JPD3D2HDH_BOVIN1, ., 1, ., 9, 9, ., -0.51780.84940.6636yesno
Q8CIM3D2HDH_MOUSE1, ., 1, ., 9, 9, ., -0.53590.77640.6168yesno
O23240D2HDH_ARATH1, ., 1, ., 9, 9, ., -0.79480.82110.6243yesno
Q7XI14D2HDH_ORYSJ1, ., 1, ., 9, 9, ., -0.69120.86110.6547yesno
A1L258D2HDH_DANRE1, ., 1, ., 9, 9, ., -0.55380.77640.6191yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
COG0277 459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-81
TIGR00387 413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-49
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 7e-38
PLN02805 555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 2e-30
PRK11230 499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 1e-27
pfam02913 247 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t 1e-16
TIGR01678 438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 3e-14
PRK11183 564 PRK11183, PRK11183, D-lactate dehydrogenase; Provi 4e-08
PLN02465 573 PLN02465, PLN02465, L-galactono-1,4-lactone dehydr 1e-06
TIGR01679 419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 4e-06
TIGR01676 541 TIGR01676, GLDHase, galactonolactone dehydrogenase 2e-04
PRK11282352 PRK11282, glcE, glycolate oxidase FAD binding subu 8e-04
COG0812291 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 0.002
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information 
 Score =  257 bits (658), Expect = 2e-81
 Identities = 120/326 (36%), Positives = 174/326 (53%), Gaps = 9/326 (2%)

Query: 85  YFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVV 144
             K +LGE +V+ D     A   D    YRG    ++ P++  EV+ IL+  N   + VV
Sbjct: 1   SLKRILGELNVLTDPADRAAYRTDA-SVYRGLPLAVVFPKSEEEVAAILRLANENGIPVV 59

Query: 145 PQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204
           P+GG T L GG+VP    V++++  +N I+  D   G    +AG  LE+L   L  HG  
Sbjct: 60  PRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLF 118

Query: 205 MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNT 264
           +P+D  + G+  IGGN++TNAGGLR +RYG    NVLGL  VL +G+++ +   LRKDN 
Sbjct: 119 LPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNA 178

Query: 265 GYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLG 321
           GYDL  LF+GSEG+LGI+T+ ++   P   +   A        +  +L   A      LG
Sbjct: 179 GYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALG 238

Query: 322 EILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSS 381
            I +A EF+D   +     YL G   P         +L+E  GS+E+   E LEA     
Sbjct: 239 VIPAALEFMDR-PIKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELL 294

Query: 382 MEGGLISDGVIAQDINQASSFWRIRE 407
           +E GL  D V+AQD+ +A+  W  R+
Sbjct: 295 LEHGLARDLVVAQDLAEAARLWLARK 320

Length = 459
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase Back     alignment and domain information
>gnl|CDD|236893 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
KOG1232 511 consensus Proteins containing the FAD binding doma 100.0
PRK11230 499 glycolate oxidase subunit GlcD; Provisional 100.0
PLN02805 555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR00387 413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
COG0277 459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PRK11183 564 D-lactate dehydrogenase; Provisional 100.0
PLN02441 525 cytokinin dehydrogenase 100.0
KOG1231 505 consensus Proteins containing the FAD binding doma 100.0
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 100.0
TIGR01676 541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01678 438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679 419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.98
KOG1233 613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.97
PLN02465 573 L-galactono-1,4-lactone dehydrogenase 99.97
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.96
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.93
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.92
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.91
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
KOG4730 518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.76
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.75
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
KOG1262 543 consensus FAD-binding protein DIMINUTO [General fu 99.62
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.6
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.4
PF02913 248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 98.78
PRK09799258 putative oxidoreductase; Provisional 97.59
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 97.46
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 97.39
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 96.95
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 96.9
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 96.71
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 96.55
PLN02906 1319 xanthine dehydrogenase 95.42
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 95.37
PLN00192 1344 aldehyde oxidase 95.27
COG1319284 CoxM Aerobic-type carbon monoxide dehydrogenase, m 94.5
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 93.52
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-73  Score=554.57  Aligned_cols=363  Identities=60%  Similarity=0.976  Sum_probs=350.2

Q ss_pred             cccccceeccccccc-ccccccccccCCCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHH
Q 014408           51 FGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV  129 (425)
Q Consensus        51 ~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV  129 (425)
                      +..+....+..||++ |+.++|+|.|.+++++++..+++++|++.+.++++++..|++||+.+|++....|++|+|++||
T Consensus        23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV  102 (511)
T KOG1232|consen   23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV  102 (511)
T ss_pred             chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence            334444667779999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCCCCCccccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCC
Q 014408          130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL  209 (425)
Q Consensus       130 ~~iv~~a~~~~ipv~~rGgGt~~~g~~~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~p  209 (425)
                      ++|++||++.++.|+|+||+|++.|+++|+.+.||+++.+||+|+.+|+..++++|++||.++++.++++++|+.+|.|.
T Consensus       103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL  182 (511)
T KOG1232|consen  103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL  182 (511)
T ss_pred             HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcceeccccccccCcCCccccccccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEc
Q 014408          210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT  289 (425)
Q Consensus       210 gs~~~~tvGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl  289 (425)
                      |+.++|.|||+++|||||.+..|||+...+|+++|+|+|+|+++......+|+++|||+.++|+||||++||||++++-+
T Consensus       183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~  262 (511)
T KOG1232|consen  183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA  262 (511)
T ss_pred             CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcceeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHH
Q 014408          290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY  369 (425)
Q Consensus       290 ~p~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~  369 (425)
                      .|.|+...++++..++++++.+++.++++.++++++||||||+.+++++.+++.....|+.++ .+||+|||++|++.++
T Consensus       263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh  341 (511)
T KOG1232|consen  263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH  341 (511)
T ss_pred             cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence            999999999999999999999999999999999999999999999999999986688999887 8999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcceEEEeCCHHHHHHHHHHhccCccccc
Q 014408          370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREVPNFNSI  414 (425)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lw~~R~~~~~~~~  414 (425)
                      +++++++|++..++.+.+.|+++|+|+.|..++|++||++.++..
T Consensus       342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~  386 (511)
T KOG1232|consen  342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQ  386 (511)
T ss_pred             cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHH
Confidence            999999999999999999999999999999999999999998743

>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion] Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3pm9_A 476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 5e-60
4bc7_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 8e-14
4bby_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 9e-14
4bca_A 658 Mammalian Alkyldihydroxyacetonephosphate Synthase: 9e-14
2uuu_A 584 Alkyldihydroxyacetonephosphate Synthase In P212121 5e-12
1wve_A 520 P-Cresol Methylhydroxylase: Alteration Of The Struc 1e-08
1dii_A 521 Crystal Structure Of P-Cresol Methylhydroxylase At 1e-08
1e8f_A 560 Structure Of The H61t Mutant Of The Flavoenzyme Van 6e-06
1e0y_A 560 Structure Of The D170sT457E DOUBLE MUTANT OF VANILL 7e-06
1dzn_A 560 Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length 7e-06
2vao_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
1w1j_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
1w1l_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 8e-06
1w1m_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-alc 9e-06
1qlt_A 560 Structure Of The H422a Mutant Of The Flavoenzyme Va 1e-05
4g3t_A 403 Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal F 1e-05
4aut_A 468 Crystal Structure Of The Tuberculosis Drug Target D 1e-05
1w1k_A 560 Structure Of The Octameric Flavoenzyme Vanillyl-Alc 2e-05
2i0k_A 561 Cholesterol Oxidase From Brevibacterium Sterolicum- 4e-04
1i19_A 561 Crystal Structure Of Cholesterol Oxidase From B.Ste 6e-04
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  228 bits (581), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/331 (38%), Positives = 189/331 (57%), Gaps = 3/331 (0%)
Query: 77  TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYC 136
           TL+ E ++ F  ++G+K  + D   L A   +    YRG S L+L+P +T EV  I K  
Sbjct: 12  TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLA 71
Query: 137 NSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196
           N   +A+VPQGGNTGLVGG  P   EV+I++   + I   D  S  +  EAG IL+ +  
Sbjct: 72  NEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDTSSNTITVEAGAILQRVQE 131
Query: 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256
              +   + PL LGA+GSC IGGN+STNAGG   + YG      LG+E VLA+G V ++L
Sbjct: 132 KAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLL 191
Query: 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316
             L+KDNTGYDL+ LFIG+EG+LGI+T  ++   PK  +V  AF+  +      KLL  A
Sbjct: 192 SKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251
Query: 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEA 376
           + +    L++FE +    +D  + +    R+P  +  + +YVLIE +   +   R  LE+
Sbjct: 252 QGEAAGNLTSFELIAETPLDFSVRHANN-RDPLEAR-YPWYVLIELSSPRDDA-RAALES 308
Query: 377 FLLSSMEGGLISDGVIAQDINQASSFWRIRE 407
            L    E G++ D  IA  + Q  +FW++RE
Sbjct: 309 ILERGFEDGIVVDAAIANSVQQQQAFWKLRE 339
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658 Back     alignment and structure
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658 Back     alignment and structure
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658 Back     alignment and structure
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584 Back     alignment and structure
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of The Flavoprotein Subunit Upon Its Binding To The Cytochrome Subunit Length = 520 Back     alignment and structure
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A Resolution Length = 521 Back     alignment and structure
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase In The Apo Form Length = 560 Back     alignment and structure
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL- Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase In Complex With Isoeugenol Length = 560 Back     alignment and structure
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: The505ser Mutant Length = 560 Back     alignment and structure
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Phe454tyr Mutant Length = 560 Back     alignment and structure
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol Oxidase: Glu502gly Mutant Length = 560 Back     alignment and structure
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme Vanillyl-Alcohol Oxidase Length = 560 Back     alignment and structure
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form Length = 403 Back     alignment and structure
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2- Oxidoreductase (Dpre1) From Mycobacterium Smegmatis Length = 468 Back     alignment and structure
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: Ile238thr Mutant Length = 560 Back     alignment and structure
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum- His121ala Mutant Length = 561 Back     alignment and structure
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum Length = 561 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 1e-179
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 4e-66
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 6e-59
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 3e-55
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 3e-54
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-43
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 2e-35
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-34
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-34
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 5e-32
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-29
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-15
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 9e-15
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 2e-13
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-13
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-12
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 2e-12
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-11
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-11
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 6e-11
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 2e-10
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 2e-07
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
 Score =  507 bits (1308), Expect = e-179
 Identities = 130/337 (38%), Positives = 192/337 (56%), Gaps = 3/337 (0%)

Query: 71  RNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVS 130
              +  TL+ E ++ F  ++G+K  + D   L A   +    YRG S L+L+P +T EV 
Sbjct: 6   SQLSPVTLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVV 65

Query: 131 QILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190
            I K  N   +A+VPQGGNTGLVGG  P   EV+I++  M+ I   D  S  +  EAG I
Sbjct: 66  AICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAI 125

Query: 191 LENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANG 250
           L+ +     +   + PL LGA+GSC IGGN+STNAGG   + YG      LG+E VLA+G
Sbjct: 126 LQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADG 185

Query: 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ 310
            V+++L  L+KDNTGYDL+ LFIG+EG+LGI+T  ++   PK  +V  AF+  +      
Sbjct: 186 RVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDAL 245

Query: 311 KLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYD 370
           KLL  A+ +    L++FE +    +D  + +    R+P  +  + +YVLIE +   +   
Sbjct: 246 KLLGIAQGEAAGNLTSFELIAETPLDFSVRHA-NNRDPLEAR-YPWYVLIELSSPRDD-A 302

Query: 371 REKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRE 407
           R  LE+ L    E G++ D  IA  + Q  +FW++RE
Sbjct: 303 RAALESILERGFEDGIVVDAAIANSVQQQQAFWKLRE 339
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
3pm9_A 476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A 658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2uuu_A 584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
1f0x_A 571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 100.0
1e8g_A 560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 100.0
1wvf_A 520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2exr_A 524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
1w1o_A 534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
3tsh_A 500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A 473 Carbohydrate oxidase; protein-substrate analogue c 100.0
2bvf_A 459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 100.0
2vfr_A 422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3fw9_A 495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3vte_A 518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
4feh_A 481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
1zr6_A 503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2wdx_A 523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A 521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
3pop_A 501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A 530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
3js8_A 540 Cholesterol oxidase; cholsterol, organic solvent s 99.97
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.97
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.94
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.91
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.9
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.61
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.96
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.94
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 97.87
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 97.47
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 96.97
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 95.73
3unc_A 1332 Xanthine dehydrogenase/oxidase; oxidoreductase; HE 95.15
3zyv_A 1335 AOH1; oxidoreductase, molybdenum cofactor; HET: MT 86.17
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
Probab=100.00  E-value=6.7e-61  Score=501.10  Aligned_cols=345  Identities=38%  Similarity=0.635  Sum_probs=316.0

Q ss_pred             CCCHHHHHHHHHhhCCCceecChHHHHHhhhccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc
Q 014408           77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS  156 (425)
Q Consensus        77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~  156 (425)
                      .++++++++|++++|+++|+++++.+..|++||+..+++.|.+|++|+|++||+++|++|+++++|++|+|||||+.|++
T Consensus        12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~   91 (476)
T 3pm9_A           12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ   91 (476)
T ss_dssp             CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred             cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence            47789999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             cccCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccccccCcCCccccccc
Q 014408          157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL  236 (425)
Q Consensus       157 ~~~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va~nagG~~~~~yG~~  236 (425)
                      +|..++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++...+||||++++|+||.++.+||.+
T Consensus        92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~  171 (476)
T 3pm9_A           92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA  171 (476)
T ss_dssp             CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred             cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence            98778999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cceEeEEEEEecCCceeeccCCccCCCCCCCchhhhhcCCCCceEEEEEEEEcccCCcceeEEEEEcCCHHHHHHHHHHH
Q 014408          237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA  316 (425)
Q Consensus       237 ~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~GtlGIIT~~tlkl~p~p~~~~~~~~~~~~~~~~~~a~~~~  316 (425)
                      +|+|+++++|++||++++++....|++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.+++.++
T Consensus       172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~  251 (476)
T 3pm9_A          172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA  251 (476)
T ss_dssp             HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred             HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence            99999999999999999998888899999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHcCCCceEEEeeCHHHHHHHHHhhcCCCCCCCCCCcceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceEEEeCCH
Q 014408          317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI  396 (425)
Q Consensus       317 ~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~~~l~~~~~~~~llie~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  396 (425)
                      ++..+..|+++|+||+.++++++++ ++.+.|++.. .+++||+|++|++++ ++++++++++.+.+.+...+..+++++
T Consensus       252 ~~~~g~~p~a~El~d~~~~~~~~~~-~~~~~~~~~~-~~~~llve~~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~a~~~  328 (476)
T 3pm9_A          252 QGEAAGNLTSFELIAETPLDFSVRH-ANNRDPLEAR-YPWYVLIELSSPRDD-ARAALESILERGFEDGIVVDAAIANSV  328 (476)
T ss_dssp             HHHHGGGEEEEEEEEHHHHHHHHHH-TTCCCCSSSC-CSEEEEEEEEESSSC-HHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred             HHhcCCCceEEEecCHHHHHHHHhc-cCCCCCCCcc-CCeEEEEEEccCcHH-HHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence            8666778999999999999999887 4566666543 568999999998843 456778888887777766789999999


Q ss_pred             HHHHHHHHHhccCccc------------cccchhhhhhhc
Q 014408          397 NQASSFWRIREVPNFN------------SIYYPCVQDYLN  424 (425)
Q Consensus       397 ~~~~~lw~~R~~~~~~------------~~~~~~~~~~~~  424 (425)
                      ++++++|++||.++++            .+|++++++|+.
T Consensus       329 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~  368 (476)
T 3pm9_A          329 QQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIE  368 (476)
T ss_dssp             HHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHH
Confidence            9999999999977643            238888888864
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A* Back     alignment and structure
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 425
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-28
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 5e-26
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 5e-26
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 7e-24
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 7e-22
d1e8ga1 287 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fu 2e-09
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score =  109 bits (273), Expect = 1e-28
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 13/210 (6%)

Query: 89  LLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR---LLAVVP 145
           L  +  +  D +   AA+ D+          +L P +T ++  +L   NS       +  
Sbjct: 2   LALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAF 61

Query: 146 QGGNTGLVGGSVP----VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDH 201
           +G    L+G +      V +   +   +    I        +      +  +++      
Sbjct: 62  RGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLAR 121

Query: 202 GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRK 261
             + P          +GG +S      +  R+G    NVL ++ +  +G+++        
Sbjct: 122 -GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTC-----S 175

Query: 262 DNTGYDLKHLFIGSEGSLGIVTKVSIHTPP 291
                DL    +G  G  G++T+  I   P
Sbjct: 176 KQLNADLFDAVLGGLGQFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 287 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 100.0
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.95
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.89
d1f0xa1 294 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.26
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 97.52
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 97.41
d1e8ga1 287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 97.13
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 97.12
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 97.05
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 96.99
d1wvfa1 279 Flavoprotein subunit of p-cresol methylhydroxylase 96.94
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.86
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4.1e-42  Score=326.23  Aligned_cols=211  Identities=24%  Similarity=0.353  Sum_probs=183.4

Q ss_pred             HHHHHHHHhhCCCceecChHHHHHhhhccc--cccCCCccEEEEcCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCc-c
Q 014408           81 EDVSYFKELLGEKSVIQDEDVLLAANEDWM--RKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V  157 (425)
Q Consensus        81 ~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~--~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rGgGt~~~g~~-~  157 (425)
                      .++++|++++|+++|+++++++..|++||.  ..+...|.+||+|+|++||+++|++|+++++|++++|+||++.++. .
T Consensus        14 ~~v~~l~~ivG~~~V~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~i~~~g~G~s~~~g~~~   93 (236)
T d1wvfa2          14 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA   93 (236)
T ss_dssp             HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred             HHHHHHHHHcCCccEEECHHHHHHHhCccccccccCcCCCEEEecCCHHHHHHHHHHHHcCCcceecccccccccccccc
Confidence            468899999999999999999999999974  3456789999999999999999999999999999999999986543 3


Q ss_pred             c-cCCeEEEEeCCCCCeeEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCcCcceeccccc-cccCcCCcccccc
Q 014408          158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVS-TNAGGLRLVRYGS  235 (425)
Q Consensus       158 ~-~~~gvvIdls~ln~I~~id~~~~~v~veaGv~~~~L~~~l~~~Gl~lp~~pgs~~~~tvGG~va-~nagG~~~~~yG~  235 (425)
                      + .+++|+|||++||+|+++|+++++++||||++|.||+++|.++|+.+|++|+.  .+++||.++ ++++|.++.+||.
T Consensus        94 ~~~~~~ividl~~mn~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~--~~~~gG~i~~~~~~G~~~~~yG~  171 (236)
T d1wvfa2          94 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSA--PSAIAGPVGNTMDRGVGYTPYGE  171 (236)
T ss_dssp             CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCS--SCTTCCHHHHHHTTCBCSSTTCB
T ss_pred             cccceEEEeecccccchhhhcccccceehhhhhhhhhhHHHHhhhcccccccccc--ccccccccccccccccccccccc
Confidence            3 35789999999999999999999999999999999999999999999887764  356777664 7999999999999


Q ss_pred             ccceEeEEEEEecCCceeeccCCccCCCCCCCchhhhh-------cCCCCceEEEEEEEEcccCC
Q 014408          236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFI-------GSEGSLGIVTKVSIHTPPKL  293 (425)
Q Consensus       236 ~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~~~~-------Gs~GtlGIIT~~tlkl~p~p  293 (425)
                      ++|+|+++|+|++||++++++....++..++++++...       ||+|+|||||+++||++|+|
T Consensus       172 ~~d~v~~levVl~~G~iv~~~~~~~~~~~~~~~~~~~~G~~~~~l~SeGtlGIIt~~tlkl~P~P  236 (236)
T d1wvfa2         172 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP  236 (236)
T ss_dssp             GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTSSSCEEEEEEEECEECC
T ss_pred             cccceeeeEEEcCCCcEEEeCCccCCCccHHHHHhcCcCccccccccccceEEEEEEEEEEEcCC
Confidence            99999999999999999987654444444455544433       49999999999999999998
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure