Citrus Sinensis ID: 014436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MDSIISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHccccHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MDSIISIEfeeapslgskaanqsqtdpKLLKAaadgnaepfKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQvnakgdtplhvaakfghSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKkntalhdamfpgnMEVVKILtredpdypysandygktplymaaesesSDMVLTLLENCtslshegpngkTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKvtdqygwtpihyAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASfqlqdlkpllrnpFARILInegdakgntplhvfaavrpsefnrymsrtthanyqavndqnvsvghimkygypELLVINLSILSTYKSRFLFHYLFFYAVN
Flexible Loop (DISEMBL)
MDSIISIEFeeapslgskaanqsqtDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKntalhdamfpGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINegdakgntplHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Low Complexity Region (SEG)
MDSIISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Disordered region (IsUnstruct)
********************************************AREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQ********MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA*******MVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAV*
Disordered Region (DISOPRED)
MDSIISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Disordered Region (DISEMBL)
MDSIISIEFEEAPS***************LKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Disordered Region (DISPRO)
MDSIISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQ*****ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYL****VN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFYAVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q9ERK0	786	Receptor-interacting seri	yes	no	0.625	0.337	0.288	1e-16
Q502K3	1071	Serine/threonine-protein	no	no	0.603	0.239	0.268	6e-16
P57078	832	Receptor-interacting seri	yes	no	0.584	0.298	0.269	1e-15
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.608	0.492	0.274	2e-15
B2RXR6	993	Serine/threonine-protein	no	no	0.561	0.239	0.319	2e-13
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.438	0.047	0.305	3e-13
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.438	0.047	0.305	3e-13
Q54KA7	986	Ankyrin repeat, PH and SE	no	no	0.589	0.253	0.264	4e-13
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.575	0.124	0.278	6e-13
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.646	0.255	0.268	7e-13

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 143/302 (47%), Gaps = 37/302 (12%)

Query: 45  AREVIESLLTLQT--------RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK 96
            R ++E LL  +T        + T LH     Q+ + AST+ + E      A + +V+ +
Sbjct: 485 GRGIVELLLARKTSVNAKDEDQWTALHF--AAQNGDEASTRLLLEK----NASVNEVDFE 538

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRA-KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           G TP+HVA + G  +IVR L+ R   +   G +A               LH A + G++ 
Sbjct: 539 GRTPMHVACQHGQENIVRTLLRRGVDVGLQGKDAW------------LPLHYAAWQGHLP 586

Query: 156 VVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214
           +VK+L ++ P    +A    G+TPL++AA+     +   L++ C+ ++      +T LH 
Sbjct: 587 IVKLLAKQ-PGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNICSLQAQTPLHV 645

Query: 215 AVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNI 274
           A       G     R L  R      +T + G+T +H AA +G      LL I++ A  +
Sbjct: 646 AAE----TGHTSTARLLLHRGAGKEALTSE-GYTALHLAAQNGHLATVKLL-IEEKADVM 699

Query: 275 ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL 334
           A      TALHLAA RGH+  VE ++S   +  +L D +  + LH A      Q ++ LL
Sbjct: 700 ARGPLNQTALHLAAARGHSEVVEELVS--ADLIDLSDEQGLSALHLAAQGRHSQTVETLL 757

Query: 335 RN 336
           ++
Sbjct: 758 KH 759

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 130/317 (41%), Gaps = 61/317 (19%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKL-------AQDGDEAARQMIRMVNNKKNTALHDAM 149
           G  PLH+A  +G SD  R L+   +L       +++   +A   I   +N   T LH A 
Sbjct: 372 GMFPLHLAVLYGSSDCCRKLLSSGQLYSIVLSMSKEHVLSAGFDINTPDNFGRTCLHAAA 431

Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
             GN+E + +L     D     + +G+TPL+ AA +     V+ L+     ++    +G 
Sbjct: 432 SGGNIECLNLLLSSGADM-NKKDKFGRTPLHYAAANGRYQCVVVLVGAGAEVNERDRSGC 490

Query: 210 TALH--AAVMYFDFKGDHHA---MRQLFGRKKSLLKV------------TDQYGWTPIHY 252
           T LH  AA   F      HA     Q  G K+S L V             +  G++ +HY
Sbjct: 491 TPLHYSAASTAFCRTDRPHASTHQNQEDGEKESFLCVEHLLDNGADPCLCNTKGYSAVHY 550

Query: 253 AAYHGKYWINDLLEIDQTATNIADKDRK-------------------------------- 280
           AA HG     +LL ++     + DK+                                  
Sbjct: 551 AAAHGNKQNLELL-LEMCFNTLGDKESNGSISPLHLAVESGHWECVTVLIESGVCVDVCD 609

Query: 281 ---MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNP 337
               + L+LA+ RGH+R VE +LS +  C       +W  LH A A+   + L+ LL + 
Sbjct: 610 PVGRSVLYLASQRGHSRCVELLLSQSASCLLAEHRSKWGPLHVAAANGHSECLRMLLCSE 669

Query: 338 FARILINEGDAKGNTPL 354
               L+N  DA+G TPL
Sbjct: 670 GGADLVNVTDAEGQTPL 686

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 135/275 (49%), Gaps = 27/275 (9%)

Query: 64  INIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA-KL 122
           ++   Q+ + +ST+ + E      A + +V+ +G TP+HVA + G  +IVR+L+ R   +
Sbjct: 556 LHFAAQNGDESSTRLLLEK----NASVNEVDFEGRTPMHVACQHGQENIVRILLRRGVDV 611

Query: 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYM 181
           +  G +A               LH A + G++ +VK+L ++ P    +A    G+TPL++
Sbjct: 612 SLQGKDAW------------LPLHYAAWQGHLPIVKLLAKQ-PGVSVNAQTLDGRTPLHL 658

Query: 182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
           AA+     +   L++ C+ ++      +T LH A      +  H +  +L   + +  + 
Sbjct: 659 AAQRGHYRVARILIDLCSDVNVCSLLAQTPLHVAA-----ETGHTSTARLLLHRGAGKEA 713

Query: 242 TDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
               G+T +H AA +G      LL +++ A  +A      TALHLAA  GH+  VE ++S
Sbjct: 714 MTSDGYTALHLAARNGHLATVKLL-VEEKADVLARGPLNQTALHLAAAHGHSEVVEELVS 772

Query: 302 LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336
              +  +L D +  + LH A      Q ++ LLR+
Sbjct: 773 --ADVIDLFDEQGLSALHLAAQGRHAQTVETLLRH 805

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 30/288 (10%)

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNT--ALH 146
           LL + N  G+T L+VAA++G++D+V++L+  +     G +A           KN   A H
Sbjct: 48  LLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKA-----------KNGFDAFH 96

Query: 147 DAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG- 205
            A   GN++V+ +L   +P+  ++ +    T L+ AA     ++V  LL+    L+    
Sbjct: 97  IAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIAR 156

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND-L 264
            NGKTALH+A       G    +++L  +K  ++   D+ G T +H A       I D L
Sbjct: 157 SNGKTALHSAAR----NGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVL 212

Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS 324
           +E D +  N AD ++  T LH+A  +  A  V+T+L    E   +  N+           
Sbjct: 213 MEADGSLINSAD-NKGNTPLHIAVRKNRAEIVQTVLKYC-EVSRVAVNKSGETALDIAEK 270

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRT 372
             L ++ PLL+       I   +A+   P      V PS  +R +  T
Sbjct: 271 TGLHEIVPLLQK------IGMQNARSIKPAE---KVEPSGSSRKLKET 309

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 119/269 (44%), Gaps = 31/269 (11%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           KG TPLH AA  G   +V+ L++   L  + DE        +N   NTALH A + G   
Sbjct: 205 KGYTPLHAAASNGQISVVKHLLN---LGVEIDE--------INVYGNTALHIACYNGQDA 253

Query: 156 VVKILTREDPDYPYSA---NDYGKTPLYMAAESESSDMVLTLL-ENCTSLSHEGPNGKTA 211
           VV  L     DY  +    N+ G TPL+ AA S    + L LL  N   ++ +  +GK+ 
Sbjct: 254 VVNELI----DYGANVNQPNNSGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSP 309

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG-KYWINDLLEIDQT 270
           LH   ++  F        Q   +    +   D+ G TP+H AA HG +  IN L  I   
Sbjct: 310 LHMTAVHGRF-----TRSQTLIQNGGEIDCVDKDGNTPLHVAARHGHELLINTL--ITSG 362

Query: 271 ATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL 330
           A         M  LHLAA   H+     +LS   E  +  D      LH A A   ++ +
Sbjct: 363 ADTAKCGIHSMFPLHLAALNAHSDCCRKLLSSGFE-IDTPDTFGRTCLHAAAAGGNVECI 421

Query: 331 KPLLRNPFARILINEGDAKGNTPLHVFAA 359
           K LL++  A    ++ D  G TPLH  AA
Sbjct: 422 K-LLQSSGAD--FHKKDKCGRTPLHYAAA 447

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 106/249 (42%), Gaps = 63/249 (25%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
            N  G   LH+AAK GH  +V+ L+ R              +     K NTALH A   G
Sbjct: 60  CNQNGLNALHLAAKEGHVGLVQELLGRGS-----------SVDSATKKGNTALHIASLAG 108

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT-- 210
             EVVK+L +E  +   + +  G TPLYMAA+    D+V  LLEN  + S    +G T  
Sbjct: 109 QAEVVKVLVKEGANI-NAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPL 167

Query: 211 ---------------------------ALHAAVMYFDFKG-------DHHAMRQLFGRKK 236
                                      ALH A    D K        DH+A  Q     K
Sbjct: 168 AVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAALLLQNDHNADVQ----SK 223

Query: 237 SLLKVTDQYGWTPIHYAAYHGKYWINDLL-----EIDQTATNIADKDRKMTALHLAAGRG 291
            ++  T + G+TP+H AA++G   +  LL      +D TA N       +T LH+A+ RG
Sbjct: 224 MMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARN------GITPLHVASKRG 277

Query: 292 HARTVETIL 300
           +   V+ +L
Sbjct: 278 NTNMVKLLL 286

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 106/249 (42%), Gaps = 63/249 (25%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
            N  G   LH+AAK GH  +V+ L+ R              +     K NTALH A   G
Sbjct: 60  CNQNGLNALHLAAKEGHVGLVQELLGRGS-----------SVDSATKKGNTALHIASLAG 108

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT-- 210
             EVVK+L +E  +   + +  G TPLYMAA+    D+V  LLEN  + S    +G T  
Sbjct: 109 QAEVVKVLVKEGANI-NAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPL 167

Query: 211 ---------------------------ALHAAVMYFDFKG-------DHHAMRQLFGRKK 236
                                      ALH A    D K        DH+A  Q     K
Sbjct: 168 AVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAALLLQNDHNADVQ----SK 223

Query: 237 SLLKVTDQYGWTPIHYAAYHGKYWINDLL-----EIDQTATNIADKDRKMTALHLAAGRG 291
            ++  T + G+TP+H AA++G   +  LL      +D TA N       +T LH+A+ RG
Sbjct: 224 MMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARN------GITPLHVASKRG 277

Query: 292 HARTVETIL 300
           +   V+ +L
Sbjct: 278 NTNMVKLLL 286

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 37/287 (12%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDE--------------AARQMIRMVNN 139
           ++ G+TPL  A+  GH + +++L+++  +  +  +              +A  ++ ++N 
Sbjct: 99  DSAGNTPLQWASSRGHLECIKLLVEKGGVDVNTKDDKNGTPLHKASLFASAECVLYLLNG 158

Query: 140 KKN---------TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
           K +         T LH A   GN + V++L + D       ND   TPL+ A+ S  S  
Sbjct: 159 KADPRAVTTNGETPLHHASAGGNPQCVELLIKADSKVNAVDNDC-ITPLHQASFSGHSSC 217

Query: 191 VLTLLENCTSLSHEGPNGKTALH--AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT 248
           V  LL+    +     +G + LH  A+  Y D       + QL  R    +   D  G T
Sbjct: 218 VSLLLKKGAKVDPRDIHGISPLHNAASAGYVD------CVEQLV-RNGENINCVDIEGVT 270

Query: 249 PIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFE 308
           P+H+  ++G   +   L       N+ D +   T LH AA  GH    E +L L P   +
Sbjct: 271 PLHHTCFNGNLQLTKRLIELGAKINMVD-EMGETPLHKAAFNGHKEVCEYLLYLDPTMID 329

Query: 309 LVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
             D+R+   LH A  +  L  +  L+R    +  IN  D +G TPLH
Sbjct: 330 CRDSRQSTSLHLAAFNGLLDMVDLLIR---YKAQINIKDEEGATPLH 373

Dictyostelium discoideum (taxid: 44689)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 22/266 (8%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
            N +G+T LH+AA+ G +++VR L+      QDG +     +        T LH +   G
Sbjct: 445 TNVRGETALHMAARSGQAEVVRYLV------QDGAQ-----VEAKAKDDQTPLHISARLG 493

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
             ++V+ L ++    P +A   G TPL++AA     D+   LL++  SLS     G T L
Sbjct: 494 KADIVQQLLQQGAS-PNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPL 552

Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
           H A  Y   +     +  L  +K +      + G TP+H AA++    +  LL +DQ A+
Sbjct: 553 HVAAKYGKLE-----VASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA-LLLLDQGAS 606

Query: 273 NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKP 332
             A      T LH+AA +       ++L    +    V  +    +H A     + D+  
Sbjct: 607 PHAAAKNGYTPLHIAAKKNQMDIATSLLEYGADA-NAVTRQGIASVHLAAQEGHV-DMVS 664

Query: 333 LLRNPFARILINEGDAKGNTPLHVFA 358
           LL +  A   +N  +  G TPLH+ A
Sbjct: 665 LLLSRNAN--VNLSNKSGLTPLHLAA 688

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 150/399 (37%), Gaps = 125/399 (31%)

Query: 71  AENASTKFVEEILEICPALLIQVNA---KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
           A N +TK VE I+     LL  VN     G T LH A   GH ++V +L+++       D
Sbjct: 115 AANRATKCVEAIIP----LLSTVNVADRTGRTALHHAVHSGHLEMVNLLLNKGASLSTCD 170

Query: 128 EAARQMIR---------------------MVNNKKN-TALHDAMFPGNMEVVKILTR--- 162
           +  RQ I                      M  +KK  T LH A   G +EVV+ L R   
Sbjct: 171 KKDRQPIHWAAFLGHLEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRLGV 230

Query: 163 --EDPD----------------------YPYSA-----NDYGKTPLYMAAESESSDMVLT 193
             ++P+                        Y A     N+ G TPL+ AA S +  + L 
Sbjct: 231 EIDEPNSFGNTALHIACYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLE 290

Query: 194 LL-ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY 252
           LL  N   ++ +   GK+ LH A ++  F        Q+  +  S +   D+YG TP+H 
Sbjct: 291 LLVNNGADVNFQSKEGKSPLHMAAIHGRFT-----RSQILIQNGSEIDCADKYGNTPLHV 345

Query: 253 AAYHGKYWINDLLEIDQTATNIADKDRK----MTALHLAAGRGHARTVETILSLAPECFE 308
           AA +G   +     I    TN AD  R+    M  LHLA   G +     +LS + + + 
Sbjct: 346 AARYGHELL-----ISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLS-SGQLYS 399

Query: 309 LV------------------DNRRWNFLHYAVASFQLQDLKPLL--------RNPFARI- 341
           +V                  DN     LH A +   ++ L  LL        R+ F R  
Sbjct: 400 IVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTP 459

Query: 342 ---------------------LINEGDAKGNTPLHVFAA 359
                                 INE D KG TPLH  AA
Sbjct: 460 LHYAAANGSYQCTVTLVTAGASINEADCKGCTPLHYAAA 498

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
255585399	575	ankyrin repeat-containing protein, putat	0.830	0.612	0.447	1e-76
224127079	394	predicted protein [Populus trichocarpa]	0.870	0.936	0.423	4e-75
255551947	582	ankyrin repeat-containing protein, putat	0.811	0.591	0.433	5e-75
224127106	575	predicted protein [Populus trichocarpa]	0.863	0.636	0.412	1e-73
224127104	405	predicted protein [Populus trichocarpa]	0.877	0.918	0.416	2e-73
224127098	399	predicted protein [Populus trichocarpa]	0.877	0.932	0.416	2e-73
224145572	395	predicted protein [Populus trichocarpa]	0.870	0.934	0.419	1e-71
224107373	391	predicted protein [Populus trichocarpa]	0.702	0.762	0.412	1e-59
225432914	596	PREDICTED: ankyrin repeat-containing pro	0.771	0.548	0.392	3e-55
147772498	708	hypothetical protein VITISV_032148 [Viti	0.698	0.418	0.416	5e-55

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/369 (44%), Positives = 233/369 (63%), Gaps = 17/369 (4%)

Query: 1   MDSIISIEFEEAPSLGSKAANQSQT--DPKLLKAAADGNAEPFKDMAREVIESLLTLQTR 58
           MD   S   + +PS G     ++ T     L KAA DG  +PFK+ A  +   LL    +
Sbjct: 1   MDQSTSNSVQASPSNGYHHQTETITYMSLDLYKAAEDGKIDPFKNFAGPL--DLLVTPIK 58

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
           +TILH+N+        ST FV+E L++CP +L+Q+NA GDT LH+AA++GH DIV++LI+
Sbjct: 59  DTILHLNL--ASPSERSTSFVKEALDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIE 116

Query: 119 RAKLAQDGD-----EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND 173
             + AQ  D     EA RQM+RM N  K TALH+A    + ++V++L  +DPD+ +S+ND
Sbjct: 117 HTR-AQHQDLESAGEAVRQMLRMTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSND 175

Query: 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG 233
           +G+TPLY+A+E    ++V+ +L+ CTSL++ GPNGKTALHAA M+    G  HA   +  
Sbjct: 176 FGETPLYLASERGHLEVVVIMLKACTSLAYGGPNGKTALHAAAMH-RHGGIVHA---ILD 231

Query: 234 RKKSLLKVTDQYGWTPIHYAAYHG-KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292
           +K SL+   D+ GWTP+HYAAY G    +  LL  D+     ADK R+ TALHLAA + +
Sbjct: 232 KKTSLVNKADEMGWTPLHYAAYIGASRVVKQLLGYDKYVAYAADKARRRTALHLAACQAN 291

Query: 293 ARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNT 352
            +++  I+   P+C +LVDNR WN  HYAV S     LK LL NP    L+NE DA+GNT
Sbjct: 292 IKSMREIIFKCPDCCKLVDNRGWNVAHYAVISKSDDALKILLANPSCIYLVNEKDAQGNT 351

Query: 353 PLHVFAAVR 361
           PLH+ AA++
Sbjct: 352 PLHLLAALQ 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 169/399 (42%), Positives = 240/399 (60%), Gaps = 30/399 (7%)

Query: 26  DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
           DP L KAA  GN  PF++  +  +  LLT    NTILH+ +  Q +E  ST FV++ LE 
Sbjct: 2   DPVLFKAAEAGNIGPFENY-QTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLER 59

Query: 86  CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL----AQDGDEAARQMIRMVNNKK 141
           CP LL Q N +G+TPLH+AA+ GHS++V+VLIDRAK      + G   A+ M+RM N ++
Sbjct: 60  CPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEEQ 119

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE-------SESSDMVLTL 194
           +TALH+A       VV+ILT+EDP++ Y AN +G+TPLY+AA         E   +V  +
Sbjct: 120 DTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKVVDGI 179

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           L NC S+ + GP+G+TALHAA M  +++      R++  ++K L K TD+ GW+P+HYA+
Sbjct: 180 LGNCISVDYGGPDGRTALHAASMAANYE----TARKMLEKEKKLTKTTDENGWSPLHYAS 235

Query: 255 YHGKYWIND-----LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFEL 309
           Y    W N      LLE D +A +IA+ ++K TALH+AA +GH   ++ I+S  P C +L
Sbjct: 236 YCD--WSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDL 293

Query: 310 VDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFN-RY 368
           VDNR WN LHYAVAS   +  K  L+ P    L  E D KGNTP H+ AA+   +   RY
Sbjct: 294 VDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRY 353

Query: 369 MSRTTHANYQ-----AVNDQNVSVGHIMKYGYPELLVIN 402
           +       Y+      +N + +SV  I +  + E+ VIN
Sbjct: 354 VLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQVIN 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 225/362 (62%), Gaps = 18/362 (4%)

Query: 11  EAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQD 70
           E P L SK  + +  D +L KAA + N    K  A+++   L     +NTILHI++    
Sbjct: 37  EIPDLDSKTEDMAYMDAELYKAAVEENINSLKKYAKDL--DLQVTPKKNTILHIHL--NS 92

Query: 71  AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD----G 126
               S  FV+E L++CP+LL + N+ GD PLH+AA++GH DIV++L+++AK   +    G
Sbjct: 93  PNKRSVDFVKEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQNEDLETG 152

Query: 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
             A +QM +M N KK+ ALH+A    ++ VV++LTR DP + Y ANDY +TPLY+AA   
Sbjct: 153 RGAMKQMWQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARG 212

Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG 246
              +V+ +L  C S+++ GP GKTALH AV+     G+   + ++  R+K L    ++ G
Sbjct: 213 YLYVVIEILNTCKSVAYGGPKGKTALHGAVL----SGNRGIVLEILKREKRLTIEAEENG 268

Query: 247 WTPIHYAAY-----HGKYWI-NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
           WTP+HYAAY      G Y I   LLE D++A  + DKDRK TALHLAA RG+ R ++ I+
Sbjct: 269 WTPLHYAAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRGNVRIMKEII 328

Query: 301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360
           S  P+C E+ D+R WN LHYAV S   + L+ +LRN     L+N+ DA+GNTPLH+ A  
Sbjct: 329 SKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLIDLVNDRDAQGNTPLHLLAVS 388

Query: 361 RP 362
           RP
Sbjct: 389 RP 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/395 (41%), Positives = 233/395 (58%), Gaps = 29/395 (7%)

Query: 26  DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
           DP L KAA  GN  PF++     +  LLT    NTILH+ +  Q +E  ST FV++ LE 
Sbjct: 2   DPVLFKAAEAGNIGPFENYQTCSLNQLLT-PDENTILHVYLKNQSSEPESTDFVDKFLER 60

Query: 86  CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL----AQDGDEAARQMIRMVNNKK 141
           CP LL Q N +G+TPLH+ A++GHS++V+VLIDRAK      + G   A+ M+RM N ++
Sbjct: 61  CPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEEQ 120

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE-------SESSDMVLTL 194
           +TALH+A       VV+ILT+EDP++ Y AN +G+TPLY+A          E   +V  +
Sbjct: 121 DTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKVVDGI 180

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           L NC S+ + GP+G+TALHAA M      ++   R++  ++K L K TD+ GW+P+HYA+
Sbjct: 181 LGNCISVDYGGPDGRTALHAASM----AANYETARKMLEKEKKLTKTTDENGWSPLHYAS 236

Query: 255 YHGKYWIND-----LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFEL 309
           Y    W N      LLE D +  +IA+ ++K TALH+AA +GH   ++ I+S  P C +L
Sbjct: 237 YCD--WSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDL 294

Query: 310 VDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFN-RY 368
           VDNR WN LHYAVAS   +  K  L+ P    L  E D KGNTP H+ AA+   +   RY
Sbjct: 295 VDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRY 354

Query: 369 MSRTTHANYQ-----AVNDQNVSVGHIMKYGYPEL 398
           +       Y+      +N + +SV  I +  + E+
Sbjct: 355 VLFNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEI 389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/401 (41%), Positives = 239/401 (59%), Gaps = 29/401 (7%)

Query: 23  SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
           S  DP L KAAA+G+ +PF+   +  ++ LLT    NTILH+ +  Q  E   T FV  I
Sbjct: 11  SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLT-PDENTILHVYLGNQSREPELTDFVVII 68

Query: 83  LEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL----AQDGDEAARQMIRMVN 138
           LE+CP LL Q N KG+ PLH+AA +GHS++V+VLIDRAK     ++ G   A++M+RM N
Sbjct: 69  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTN 128

Query: 139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA------ESESSDMVL 192
            +++TALH+A       VV+ILT+EDP++PYSAN +G+TPLY+AA        E   +V 
Sbjct: 129 EEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVVD 188

Query: 193 TLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY 252
            +L NC S+ + GPNG+TAL+AA+    +  D    R+L  ++K L + TD+ GW+P+H+
Sbjct: 189 GILGNCISVDYGGPNGRTALNAAI----WVRDDETARKLLEKEKKLTQTTDENGWSPLHH 244

Query: 253 AAYHGKYW----INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFE 308
           AA +   W    +  LLE D +A  IA+ +++ TALH+AA +GH   ++ I+S  P C E
Sbjct: 245 AACYD--WSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCE 302

Query: 309 LVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSE---- 364
           LVDNR WN LHYAVAS         L+ P    L  + D KGNTP H+ AA+   +    
Sbjct: 303 LVDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQ 362

Query: 365 ---FNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN 402
              FN     +       +N + +SV  I +  + E+ VIN
Sbjct: 363 RVLFNDSYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVIN 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/401 (41%), Positives = 239/401 (59%), Gaps = 29/401 (7%)

Query: 23  SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
           S  DP L KAAA+G+ +PF+   +  ++ LLT    NTILH+ +  Q  E   T FV  I
Sbjct: 5   SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLT-PDENTILHVYLGNQSREPELTDFVVII 62

Query: 83  LEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL----AQDGDEAARQMIRMVN 138
           LE+CP LL Q N KG+ PLH+AA +GHS++V+VLIDRAK     ++ G   A++M+RM N
Sbjct: 63  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTN 122

Query: 139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA------ESESSDMVL 192
            +++TALH+A       VV+ILT+EDP++PYSAN +G+TPLY+AA        E   +V 
Sbjct: 123 EEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVVD 182

Query: 193 TLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY 252
            +L NC S+ + GPNG+TAL+AA+    +  D    R+L  ++K L + TD+ GW+P+H+
Sbjct: 183 GILGNCISVDYGGPNGRTALNAAI----WVRDDETARKLLEKEKKLTQTTDENGWSPLHH 238

Query: 253 AAYHGKYW----INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFE 308
           AA +   W    +  LLE D +A  IA+ +++ TALH+AA +GH   ++ I+S  P C E
Sbjct: 239 AACYD--WSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCE 296

Query: 309 LVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSE---- 364
           LVDNR WN LHYAVAS         L+ P    L  + D KGNTP H+ AA+   +    
Sbjct: 297 LVDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQ 356

Query: 365 ---FNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN 402
              FN     +       +N + +SV  I +  + E+ VIN
Sbjct: 357 RVLFNDSYGYSGREIRCGLNKRQLSVDDIYEGNFAEIQVIN 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/398 (41%), Positives = 231/398 (58%), Gaps = 29/398 (7%)

Query: 26  DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
           +PKL KAA  GN  PFKD     +  LLT + +NTILH+ +  Q   + ST FV +I+++
Sbjct: 2   EPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIIDM 60

Query: 86  CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA----QDGDEAARQMIRMVNNKK 141
           CP LL+Q N KG+ PLH AA++G S++VRVLIDRAK      + G   A++M+RM N +K
Sbjct: 61  CPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKARPTDLESGVTEAKKMLRMTNEEK 120

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA-----------ESESSDM 190
           +TALH A      +VV+ILT+EDP++ YS N +G+TPLY+AA           E     +
Sbjct: 121 DTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEENRKKV 180

Query: 191 VLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI 250
           +  +L NC S+ + G +G+TALHAA MY    GDH   R++  R  SL + TD  GW+P+
Sbjct: 181 INEILSNCKSVEYCGSHGRTALHAAGMY----GDHETTRKILERDASLTRRTDDDGWSPL 236

Query: 251 HYAAY-----HGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
           HYA +     H    +  LLE D +A  I D +++ TALHLAA RG       I++  P 
Sbjct: 237 HYAVFFRDFVHSVSTVEVLLEHDVSAAYIVDSEKR-TALHLAASRGTWAAAIAIMNTCPA 295

Query: 306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR--PS 363
             ELVD+R WN LHYA  + +   ++     P    LI E D  GNTPLH+FAA    P 
Sbjct: 296 SCELVDSRGWNALHYAAIT-RKGHIRFSRWIPKFDKLIYEKDNDGNTPLHLFAAFGNFPQ 354

Query: 364 EFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVI 401
            F R   R  +     +N QN+SV  I++  +P+  VI
Sbjct: 355 MFLRSDWRHAYKKMCGLNKQNLSVDDILRGHFPQKKVI 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107373|ref|XP_002333525.1| predicted protein [Populus trichocarpa] gi|222837132|gb|EEE75511.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/349 (41%), Positives = 200/349 (57%), Gaps = 51/349 (14%)

Query: 26  DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
           DP L K A  GN  PF++  +  ++ LLT    NTILH                      
Sbjct: 2   DPVLFKVAEAGNIGPFEN-CQTCLDQLLT-PDENTILH---------------------- 37

Query: 86  CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL----AQDGDEAARQMIRMVNNKK 141
                   N KG+ PLH+AA++GHS++V+VLID AK      + G   A++M+RM N ++
Sbjct: 38  -------ANKKGEIPLHLAARYGHSNVVKVLIDCAKALPTDPESGVTEAKKMLRMTNEEQ 90

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES----ESSDMVLTLLEN 197
           +TALH+A       VV+ILT+EDP++ YSAN  G+TPLY+AA S    E   ++  +L N
Sbjct: 91  DTALHEAARNSRGHVVEILTKEDPEFSYSANVLGETPLYIAAASRKCLERKKVIDEILTN 150

Query: 198 CTSLSH-EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
           C S+ +  GPNG+TALHAAV   D +      R+L  ++K L + TD+ GW+P+HYAA +
Sbjct: 151 CISVDYGAGPNGRTALHAAVRVRDLE----TARKLLEKEKKLTQTTDENGWSPLHYAACY 206

Query: 257 GKYW----INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDN 312
              W    +  LLE D +A  IA+ +++ TALH+AA +GH   ++ I+S  P C ELVDN
Sbjct: 207 D--WSPRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVEIMKEIVSRCPACCELVDN 264

Query: 313 RRWNFLHYAVASFQLQDL-KPLLRNPFARILINEGDAKGNTPLHVFAAV 360
           R WN LHYAVA      + K  LR P    L  + D KGNTP H+ AA+
Sbjct: 265 RGWNALHYAVARKDSSRVFKECLRIPLLARLKTKKDDKGNTPFHLIAAL 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432914|ref|XP_002280197.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 200/344 (58%), Gaps = 17/344 (4%)

Query: 58  RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
           +NT+LHI+I       A  + V  ++  CP+LL + N K +TPLH+AA+ G   IV  L+
Sbjct: 61  KNTVLHIHI---RGGQAKKEHVIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALV 117

Query: 118 DRAKL--AQDGDE------AARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169
           D+ K   A D D       + R+MI M N +++TALH+A+    +EVV  L   DP++ Y
Sbjct: 118 DQVKAPHANDADLESGRTLSVREMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEY 177

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSH-EGPNGKTALHAAVMYFDFKGDHHAM 228
             N  G+TPLYMA +    ++V  +L  C S +H +GPNG TALH A++  D KG+    
Sbjct: 178 CRNRAGETPLYMAVKRGFDELVDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGE--VG 235

Query: 229 RQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLEIDQTATNIADKDRKMTALHLA 287
           R++  +   L   TD  GWTP+HYAAY GK      LL+ D++A  IAD D K T LH+A
Sbjct: 236 RKILEKMPDLATETDDNGWTPLHYAAYFGKVSQAEALLKRDESAAYIADNDGK-TPLHIA 294

Query: 288 AGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD 347
           A R HA+ ++ ++S  P+C E+VD +R N LH AV +   + ++ +L+N +   LIN+ D
Sbjct: 295 ASRNHAQIMKKLISYCPDCSEVVDEKRHNVLHLAVQTRGREAMELILKNSWGSNLINDKD 354

Query: 348 AKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM 391
             GNTPLH+FA    S     +S     +  AVN++ ++   I+
Sbjct: 355 VDGNTPLHMFACSLSSVPTLMLSH-PRVDKMAVNNKGLTAADIL 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772498|emb|CAN60780.1| hypothetical protein VITISV_032148 [Vitis vinifera]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 188/312 (60%), Gaps = 16/312 (5%)

Query: 58  RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
           +NT+LHI+I       A  + V  ++  CP+LL + N K +TPLH+AA+ G   IV  L+
Sbjct: 163 KNTVLHIHIR---GGQAKKEHVIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALV 219

Query: 118 DRAKL--AQDGDE------AARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169
           D+ K   A D D       + R+MI M N +++TALH+A+    +EVV  L   DP++ Y
Sbjct: 220 DQVKAPHANDADLESGRTLSVREMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEY 279

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSH-EGPNGKTALHAAVMYFDFKGDHHAM 228
             N  G+TPLYMA +    ++V  +L  C S +H +GPNG TALH A++  D KG     
Sbjct: 280 CRNRAGETPLYMAVKRGFDELVDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGK--VG 337

Query: 229 RQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WINDLLEIDQTATNIADKDRKMTALHLA 287
           R++  +   L   TD  GWTP+HYAAY GK      LL+ D++A  IAD D K T LH+A
Sbjct: 338 RKILEKMPDLATKTDDNGWTPLHYAAYFGKVSQAEALLKRDESAAYIADNDGK-TPLHIA 396

Query: 288 AGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD 347
           A R HA+ ++ ++S  P+C E+VD +R N LH AV +   + ++ +L+N +   LIN+ D
Sbjct: 397 ASRNHAQIMKKLISYCPDCSEVVDEKRRNVLHLAVQTRGREAMELILKNSWGSNLINDKD 456

Query: 348 AKGNTPLHVFAA 359
           A GNTPLH+FA+
Sbjct: 457 ADGNTPLHMFAS 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.825	0.568	0.301	1.7e-27
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.752	0.471	0.277	6.3e-23
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.754	0.461	0.268	3.7e-22
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.768	0.569	0.272	9.7e-20
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.804	0.531	0.260	9.8e-20
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.620	0.484	0.297	7.9e-18
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.639	0.396	0.285	1.1e-16
UNIPROTKB|K7GSS3	2594	ANK3 "Uncharacterized protein"	0.573	0.093	0.279	9.3e-16
UNIPROTKB|E1BNC9	3342	ANK3 "Uncharacterized protein"	0.573	0.072	0.275	2.3e-15
UNIPROTKB|B7ZAU7	721	RIPK4 "Receptor-interacting se	0.584	0.343	0.283	2.6e-15

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 114/378 (30%), Positives = 187/378 (49%)

Query:    18 KAANQSQT-DPKLLKAAADGN-AEPFKDMAREV-IESLLTLQTRNTILHINIMCQDAENA 74
             K  ++S+  +P +L A   G+     K +  +V +   L     N+ILHI      A   
Sbjct:    29 KDKDESEIMNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHIA-----AALG 83

Query:    75 STKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI 134
                 VE I+   P LL  VN  G+T LHVAA+ G  +IV +L+ R        +A    I
Sbjct:    84 HVHIVEFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILV-RFITESSSYDA---FI 139

Query:   135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
                +   +TALH A+   ++EV   L     D  +  N+   +PLYMA E+   ++VL +
Sbjct:   140 AAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKM 199

Query:   195 LENCTSLSHEGP--NGKTALHAAVMYFDFKGDHHAMRQLFGRKK-SLLKVTDQYGWTPIH 251
             LE+ +S S      +GK+ +HAA+     K +   +  +  R+   L+++ ++ G T + 
Sbjct:   200 LESSSSPSILASMFSGKSVIHAAM-----KANRRDILGIVLRQDPGLIELRNEEGRTCLS 254

Query:   252 YAAYHGKY-WINDLL-EIDQTATN---IADKDRKMTALHLAAGRGHARTVETILSLAPEC 306
             Y A  G Y  I  +L E D+ A++   +AD D   T +H+AA  GH R ++  L   P+ 
Sbjct:   255 YGASMGCYEGIRYILAEFDKAASSLCYVADDDG-FTPIHMAAKEGHVRIIKEFLKHCPDS 313

Query:   307 FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR-PSEF 365
              EL++N+  N  H A  + + + +K LL+    + ++NE D  GNTPLH+    R P   
Sbjct:   314 RELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVV 373

Query:   366 NRYMSRTTHANYQAVNDQ 383
             N  ++     N +A+N++
Sbjct:   374 NM-LTWNDGINLRALNNE 390

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 95/342 (27%), Positives = 165/342 (48%)

Query:    27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTR-NTILHINIMCQDAENASTKFVEEILEI 85
             PK + A   G+    +DM  +V  +L ++    NT+LH+      A    T  V  IL  
Sbjct:    99 PKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLA-----AAAGHTDLVCYILNA 153

Query:    86 CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAK-LAQDGDEAARQMIRMVNNKKNTA 144
              P LL++ N+ G+  LHVAA  GH  +V  L+   K ++ +    A+++    +  ++ A
Sbjct:   154 YPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCNKPGVAKKIYFAKDRHQDNA 213

Query:   145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC------ 198
             LH ++   +++V   L   +    + AN+ G +PLY+A E+  +D+  T+ ++       
Sbjct:   214 LHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSS 273

Query:   199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK 258
             TS       G++ +H A+     + D   +  +     SL+   D+ G T + + A  G 
Sbjct:   274 TSTLASKIGGRSIVHGAMKAR--RKD--ILVAILSEDASLINFRDE-GRTCLSFGASLGY 328

Query:   259 Y-WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF 317
             Y     LL+    +  ++D D     +H+A   G+ + ++ IL   P+  EL+D    N 
Sbjct:   329 YEGFCYLLDKALDSVYVSDDDGSFP-IHMAVKYGYVKILKAILKRCPDALELLDRENQNV 387

Query:   318 LHYAVASFQLQDLKPLLR---NPFARILINEGDAKGNTPLHV 356
             LH A  + +++ LK +LR   +     LINE DA GNTPLH+
Sbjct:   388 LHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHL 429

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 93/346 (26%), Positives = 153/346 (44%)

Query:    27 PKLLKAAADGNAEPFKDM-AREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
             P++    +DGN E  + + +R +  + +   T ++ILH+ +     E      V+EI+  
Sbjct:   100 PEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEIVCE 154

Query:    86 CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI-----DRAKLAQDGDEAARQMIRMVNNK 140
             CP LL++ N+ G TPLHVAA  GH+ IV   +       A+L  +  E     + + +  
Sbjct:   155 CPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYV-LKDKD 213

Query:   141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200
              NTAL+ A+     E+   L   + D P+  N YG + L++A  +    +V  +L+   +
Sbjct:   214 GNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGN 273

Query:   201 LSHEGPNG---------KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH 251
                +G            K+  H A++     G    +  +     SL+   D  GWT + 
Sbjct:   274 KDLKGKKSNLESKLQGQKSLAHVALVTQSIAG---VLDVILDEYPSLMDERDINGWTCLS 330

Query:   252 YAAYHGKY-WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELV 310
              AA+ G Y  + +LLE       + D+D     +H AA +GH   VE  +   P    L+
Sbjct:   331 LAAHIGYYEGVCNLLERSTKGVYVCDQDGSFP-IHTAAEKGHENIVEEFIKRCPGSKHLL 389

Query:   311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
             +    N LH A  + +      L+ N     L    D  GNTPLH+
Sbjct:   390 NKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 94/345 (27%), Positives = 156/345 (45%)

Query:    24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTR--NTILHINIMCQDAENASTKFVEE 81
             Q + ++    +DG+ E   +M + V   +  L++   +++LH+      A     + V+ 
Sbjct:    80 QMNTEVFSGLSDGDKECL-EMLKGVGTPMACLKSDRGDSVLHLA-----ARWGHLELVKN 133

Query:    82 ILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD--GDEAARQMIRMVNN 139
             I+  CP L++++N K   PLHVAA  GHS IV  L+       D   +E   ++   V  
Sbjct:   134 IISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLR 193

Query:   140 KK--NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
              K  NTALH A+    ME+   L  E+ +  +  N+ G + LYMA E+    +V  +L+ 
Sbjct:   194 DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEILKT 253

Query:   198 CTSLSHEGPNGK--TALHAA--VMYFDFKGDHHAMRQ-LFGRKKSLLKVTDQYGWTPIHY 252
               +   EG N    + L     +++         +   +     SL    D+ G T + +
Sbjct:   254 AGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEEGRTCLSF 313

Query:   253 AAYHGKY-WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVD 311
             AA  G Y  + +LL+       + D+D     +H AA  GH R V+ IL   P    +++
Sbjct:   314 AASIGFYKGVCNLLDRSTKNVYVCDEDGSFP-IHTAAENGHIRIVKEILKRCPHSKHMLN 372

Query:   312 NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                 N LH A    +   +K L+R+   + L    D  GNTPLH+
Sbjct:   373 KLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHL 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 9.8e-20, P = 9.8e-20
 Identities = 99/380 (26%), Positives = 177/380 (46%)

Query:    26 DPKLLKAAADGNAEPFKDMAREVIESLLTL---QTRNTILHINIMCQDAENASTKFVEEI 82
             +P++  A   GN + F D  +    + L     +T +  LH+      A     + V+ I
Sbjct:    37 NPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFTLHLA-----AAWGRLELVKRI 90

Query:    83 LEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDG-DEAARQMIRMVNNKK 141
             +  CP LL++ N+K   PLH AA  G   +V   + R     DG  E  R+ + +   K 
Sbjct:    91 VSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKD 150

Query:   142 ---NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL--- 195
                NTALH A+  G+++    L + +    + AN++G +PL+ A  + S  +V  ++   
Sbjct:   151 IDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVP 210

Query:   196 -ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
              + C +L+ +    K+ +HAA+       +   +  +     SL+   D+ G T +  AA
Sbjct:   211 GQTC-NLASKLEGRKSLVHAALK----AKNSDILDVILSEDPSLVNERDEEGRTCLSVAA 265

Query:   255 YHGKY-WINDLLEIDQTATNIADKDRKMT-ALHLAAGRGHARTVETILSLAPECFELVDN 312
             Y G Y  + +LL   ++ +N+ + D   +  +H+A  +G  +    +L   P+   L++ 
Sbjct:   266 YVGYYKGVVNLLH--RSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNK 323

Query:   313 RRWNFLHYAVAS-----FQLQDLKP--LLRNPFARILINEGDAKGNTPLHVFAAV-RPSE 364
             +  N LH A  S     + LQ +K   L++N     LI E D  GNTPLH+     RP  
Sbjct:   324 QGQNILHIAAKSGKTGTYLLQVIKAYDLIKND----LIMEQDVDGNTPLHLATLTWRPRT 379

Query:   365 FNRYMSRTTHANYQAVNDQN 384
              N  +++ T  N+  + +++
Sbjct:   380 VN-ILNKFTLGNHLHIRNKD 398

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 7.9e-18, P = 7.9e-18
 Identities = 84/282 (29%), Positives = 134/282 (47%)

Query:   131 RQMIRMVNNKKN-TALHDAMFPGNME-VVKILT--REDP--DYPYSANDYGKTPLYMAAE 184
             ++M++ +  K++ T LH A+  GN + VV+ILT  RE          N  G+T LY+AAE
Sbjct:    16 KKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAE 75

Query:   185 SESSDMVLTLLENCTSLSH---EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
                 ++V  ++ NC  L+    +  NG  A H A      +GD   ++ L      L   
Sbjct:    76 YGDVEIVKEMI-NCYDLALVEIKARNGFDAFHIAAK----QGDLDVLKVLAEAHSELAMT 130

Query:   242 TDQYGWTPIHYAAYHGKYWI-NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
              D    T +H AA  G   + N LLE+  +   IA  + K TALH A+  GH + ++ +L
Sbjct:   131 VDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGK-TALHSASRNGHVKVIKALL 189

Query:   301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV 360
             +  P     +D +    LH AV    ++ ++ L++    R  IN  D KGNT LH+ A  
Sbjct:   190 ASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKAD--RSSINIADTKGNTALHIAARK 247

Query:   361 RPSEFNRYMSRTTHANYQAVNDQN-VSVGHIMKYGYPELLVI 401
               S+  + +      + +AVN     ++    K G PE+ +I
Sbjct:   248 GRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALI 289

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 83/291 (28%), Positives = 137/291 (47%)

Query:    77 KFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAAR 131
             + V+ I+  C  LL++ N+K   PLHVAA+ GH  +V  L+       A+LA++  E   
Sbjct:   133 ELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILN 192

Query:   132 Q-MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
               +++ +N   +TAL+ A+     EV   L   +    + A   G +PLY+A E++ + +
Sbjct:   193 PYLLKDING--DTALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASL 250

Query:   191 VLTLLENC----TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG 246
             V  +L N      +L+ EG   K   HAA+       D   +  +     SL+   D+ G
Sbjct:   251 VKAMLGNDGPQRKNLNLEGR--KYLAHAALN--SLSTD--ILDVILNEYPSLVDERDEEG 304

Query:   247 WTPIHYAAYHGKY-WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
              T + + A  G +  + +LL   +    + D D     +HLA  +G  + V+ I    P 
Sbjct:   305 RTCLSFGASIGYHKGVCNLLNRSRKGVFVCDDDGSYP-IHLAVEKGRIKVVKEICKRCPY 363

Query:   306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                L++ +  N LH A  S + + L+ L  +     L NE D  GNTPLH+
Sbjct:   364 SKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDGNTPLHL 414

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|K7GSS3 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 74/265 (27%), Positives = 120/265 (45%)

Query:    94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
             N +G+T LH+AA+ G +++VR L+      QDG +   +          T LH +   G 
Sbjct:   433 NVRGETALHMAARSGQAEVVRYLV------QDGAQVEAKA-----KDDQTPLHISARLGK 481

Query:   154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
              ++V+ L ++    P +A   G TPL+++A     D+   LL++  SLS     G T LH
Sbjct:   482 ADIVQQLLQQGAS-PNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLH 540

Query:   214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATN 273
              A  Y   +     +  L  +K +      + G TP+H AA++    +  LL +DQ A+ 
Sbjct:   541 VAAKYGKLE-----VANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA-LLLLDQGASP 594

Query:   274 IADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL 333
              A      T LH+AA +       T+L    +    V  +    +H A     + D+  L
Sbjct:   595 HAAAKNGYTPLHIAAKKNQMDIATTLLEYGADA-NAVTRQGIASVHLAAQEGHV-DMVSL 652

Query:   334 LRNPFARILINEGDAKGNTPLHVFA 358
             L +  A +  N  +  G TPLH+ A
Sbjct:   653 LLSRNANV--NLSNKSGLTPLHLAA 675

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BNC9 ANK3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 73/265 (27%), Positives = 119/265 (44%)

Query:    94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
             N +G+T LH+AA+ G +++VR L+      QDG +   +          T LH +   G 
Sbjct:   434 NVRGETALHMAARSGQAEVVRYLV------QDGAQVEAKA-----KDDQTPLHISARLGK 482

Query:   154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
              ++V+ L ++    P +A   G TPL++AA     D+   LL++  SL+     G T LH
Sbjct:   483 ADIVQQLLQQGAS-PNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLAITTKKGFTPLH 541

Query:   214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATN 273
              A  Y   +     +  L  +K +      + G TP+H AA++    +  LL +DQ A+ 
Sbjct:   542 VAAKYGKLE-----VANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA-LLLLDQGASP 595

Query:   274 IADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL 333
              A      T LH+AA +       T+L    +    V  +    +H A     + D+  L
Sbjct:   596 HAAAKNGYTPLHIAAKKNQMDIATTLLEYGADA-NAVTRQGIASVHLAAQEGHV-DMVSL 653

Query:   334 LRNPFARILINEGDAKGNTPLHVFA 358
             L +  A +  N  +  G  PLH+ A
Sbjct:   654 LLSRNANV--NLSNKSGLAPLHLAA 676

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0072660 "maintenance of protein location in plasma membrane" evidence=IEA

GO:0071709 "membrane assembly" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0016328 "lateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0009925 "basal plasma membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|B7ZAU7 RIPK4 "Receptor-interacting serine/threonine-protein kinase 4" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 78/275 (28%), Positives = 134/275 (48%)

Query:    64 INIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA-KL 122
             ++   Q+ + +ST+    +LE   A + +V+ +G TP+HVA + G  +IVR+L+ R   +
Sbjct:   445 LHFAAQNGDESSTRL---LLEK-NASVNEVDFEGRTPMHVACQHGQENIVRILLRRGVDV 500

Query:   123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYM 181
             +  G +A               LH A + G++ +VK+L ++ P    +A    G+TPL++
Sbjct:   501 SLQGKDAW------------LPLHYAAWQGHLPIVKLLAKQ-PGVSVNAQTLDGRTPLHL 547

Query:   182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV 241
             AA+     +   L++ C+ ++      +T LH A       G     R L  R      +
Sbjct:   548 AAQRGHYRVARILIDLCSDVNVCSLLAQTPLHVAAE----TGHTSTARLLLHRGAGKEAM 603

Query:   242 TDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
             T   G+T +H AA +G      LL +++ A  +A      TALHLAA  GH+  VE ++S
Sbjct:   604 TSD-GYTALHLAARNGHLATVKLL-VEEKADVLARGPLNQTALHLAAAHGHSEVVEELVS 661

Query:   302 LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336
                +  +L D +  + LH A      Q ++ LLR+
Sbjct:   662 A--DVIDLFDEQGLSALHLAAQGRHAQTVETLLRH 694

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01200012	annotation not avaliable (394 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017001601	hypothetical protein (522 aa)			•						0.459
	eugene3.00051263	annotation not avaliable (398 aa)			•						0.445
	fgenesh4_pg.C_LG_I003169	hypothetical protein (278 aa)			•						0.439
	grail3.0022009901	hypothetical protein (328 aa)			•						0.413
	gw1.I.2074.1	annotation not avaliable (128 aa)			•						0.410
	eugene3.00051320	SubName- Full=Auxin-regulated protein-like protein; (261 aa)			•						0.407
	grail3.0022009801	hypothetical protein (109 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
             +    T LH A   G++EVVK+L     D   + ++ G+TPL++AA++   ++V  LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255
           E    ++    +G T LH A       G+   ++ L  +  + +   D+ G TP+H AA 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARN----GNLDVVKLLL-KHGADVNARDKDGRTPLHLAAK 115

Query: 256 HGKYWINDLL 265
           +G   +  LL
Sbjct: 116 NGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
             +  G TPLH+AA  GH ++V++L++               +   +N   T LH A   
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA-----------DVNAKDNDGRTPLHLAAKN 50

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
           G++E+VK+L  +  D   + +  G TPL++AA + + D+V  LL++   ++    +G+T 
Sbjct: 51  GHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109

Query: 212 LHAAVMY 218
           LH A   
Sbjct: 110 LHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 6/129 (4%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
           ++ G+TPL++AA +   ++V  LLEN   ++ +  +G+T LH A       G    ++ L
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN----GHLEIVKLL 59

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291
              K + +   D+ G TP+H AA +G   +  LL       N  DKD + T LHLAA  G
Sbjct: 60  L-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR-TPLHLAAKNG 117

Query: 292 HARTVETIL 300
           H   V+ +L
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
             D+ G TP+H AA +G   +  LL  +    N  D D   T LHLAA  GH   V+ +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG-RTPLHLAAKNGHLEIVKLLL 60

Query: 301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                     D      LH A  +  L  +K LL++      +N  D  G TPLH+ A 
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKH---GADVNARDKDGRTPLHLAAK 115

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 17/132 (12%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPA 88
           L  AA++G+ E  K +     +         T LH+      A+N   + V+ +LE    
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHL-----AAKNGHLEIVKLLLEKGAD 65

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDA 148
           +  + +  G+TPLH+AA+ G+ D+V++L+                +   +    T LH A
Sbjct: 66  VNAR-DKDGNTPLHLAARNGNLDVVKLLLKH-----------GADVNARDKDGRTPLHLA 113

Query: 149 MFPGNMEVVKIL 160
              G++EVVK+L
Sbjct: 114 AKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 14/97 (14%)

Query: 101 LHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
           LH+AAK G+ ++V++L+++                +     +TALH A   GN+E+VK+L
Sbjct: 1   LHLAAKNGNLELVKLLLEK-------------GADVNLGDTDTALHLAARNGNLEIVKLL 47

Query: 161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
                D   + +  G T L++AA + + ++V  LLE+
Sbjct: 48  LEHGAD-VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 37/275 (13%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAA--------RQMIRMV------ 137
            +N K   PL  A K G  DI+++LID      +G + +        + MI+ +      
Sbjct: 63  HINTKIPHPLLTAIKIGAHDIIKLLID------NGVDTSILPIPCIEKDMIKTILDCGID 116

Query: 138 ----NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
               + +  T LH A+  G++E +K+L     D     +D G  P+++A +    D++  
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKL 175

Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
           LLE     + +  NG++ LH A  Y    GD+  ++ L      ++    + G+TP+H A
Sbjct: 176 LLEKGAYANVKDNNGESPLHNAAEY----GDYACIKLLIDHGNHIM-NKCKNGFTPLHNA 230

Query: 254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNR 313
             H +  I   L I+  + N  D D   T LH A        +  IL        + DN+
Sbjct: 231 IIHNRSAIE--LLINNASINDQDID-GSTPLHHAINPPCDIDIIDILLYHKADISIKDNK 287

Query: 314 RWNFLHYAVASFQLQDLKPLLRNPFAR-ILINEGD 347
             N +  A   F+  +  P++++  A  +LI E D
Sbjct: 288 GENPIDTA---FKYINKDPVIKDIIANAVLIKEAD 319

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 71  AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAA 130
           A+N + + V+ +LE    + +      DT LH+AA+ G+ +IV++L++            
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLE-----------H 50

Query: 131 RQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD 166
              +   +   NTALH A   GN+E+VK+L     D
Sbjct: 51  GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 6/214 (2%)

Query: 105 AKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF--PGNMEVVKILTR 162
           +K   S ++ +      L          +     + K   L+  +   P       +L  
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 163 EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK 222
               +  + +  G+ PL+ AA      +V  LL +   ++ +  +G T LH A +  +  
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 223 GDHH-AMRQLFGRKKSLLKVT--DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDR 279
             +    + L      L      D+ G TP+H+AA +G   I +LL ++  A   +    
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELL-LEAGADPNSRNSY 179

Query: 280 KMTALHLAAGRGHARTVETILSLAPECFELVDNR 313
            +TAL  AA  G    V+ +L        L  N 
Sbjct: 180 GVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
           L++AA++ + ++V  LLE    ++    +  TALH A       G+   ++ L      +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARN----GNLEIVKLLLEHGADV 54

Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLL 265
               D+ G T +H AA +G   I  LL
Sbjct: 55  -NAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
           LH A   GN+E+VK+L  +  D      D   T L++AA + + ++V  LLE+   ++ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 205 GPNGKTALHAAVMY 218
             +G TALH A   
Sbjct: 58  DKDGNTALHLAARN 71

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 24/214 (11%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G +P+ +A KF  S+ +++L+    +                    + LHDA+  G+++ 
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-----------SELHDAVEEGDVKA 83

Query: 157 VKILTREDPDYPYSANDY----GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
           V+ L     D    A+D     G TPL++A   +  D++  L+           +  + L
Sbjct: 84  VEELL----DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL 139

Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
           H AVM  D K       +L    K+ L + D  G TP+  A   G   I  +L       
Sbjct: 140 HLAVMMGDIK-----GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 273 NIADKDRKMTALHLAAGRGHARTVETILSLAPEC 306
           +   K+  + AL  A        V   +    +C
Sbjct: 195 DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 19/201 (9%)

Query: 26  DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEI 85
               L A    N      +   ++  L    +  +   +N+  + A   +    E +L++
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 86  C-PALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTA 144
                L   +  G  PLH AA  G   IV++L+        G +   +     +   +T 
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS------GADVNAK-----DADGDTP 109

Query: 145 LHDAMF-----PGNMEVVKILTR--EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
           LH A        GN+EV K+L     D D     ++ G TPL+ AA +  +D+V  LLE 
Sbjct: 110 LHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 198 CTSLSHEGPNGKTALHAAVMY 218
               +     G TAL  A   
Sbjct: 170 GADPNSRNSYGVTALDPAAKN 190

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 50/255 (19%)

Query: 79  VEEILEICPALLIQ----VNAK---GDTPLHV--AAKFGHSDIVRVLIDRAKLAQDGDEA 129
             ++++    LLI+    VNAK   G TPLHV  +    +  ++R+L+ +       D  
Sbjct: 96  TLDVIK----LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-----AD-- 144

Query: 130 ARQMIRMVNNKKN---TALHDAM-FPG-NMEVVKILTREDPDYPYSANDYGKTPLYMAAE 184
                  VN       T L   +     N+E++++L     D  Y+ +D  ++ L+   +
Sbjct: 145 -------VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQ 196

Query: 185 S--ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVT 242
           S    + +V  L+      +     G T LH+       K     +  L       +   
Sbjct: 197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL--VLPLL-IAGISINAR 253

Query: 243 DQYGWTPIHYAAYHGK-----YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE 297
           ++YG TP+HYAA           I   L  D  A +        T L L     + R V 
Sbjct: 254 NRYGQTPLHYAAVFNNPRACRRLIA--LGADINAVSSDGN----TPLSLMVRNNNGRAVR 307

Query: 298 TILSLAPECFELVDN 312
             L+  P   E V  
Sbjct: 308 AALAKNPS-AETVAA 321

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           ++KG TPLH+AA  G+ D V VL+           A    IR  N   NTAL +A+   +
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLL---------KHACNVHIRDANG--NTALWNAISAKH 603

Query: 154 MEVVKILTR-EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
            ++ +IL        P++A D     L  AA+      +  LL+   ++  E   G TAL
Sbjct: 604 HKIFRILYHFASISDPHAAGDL----LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL 659

Query: 213 HAAV 216
             A+
Sbjct: 660 QVAM 663

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 29  LLKAAADGNAEPFKDMAREVIES--LLTLQTRNTILHINIMCQDAENASTKFVEEILEIC 86
           L  AA +GN E    + + ++E    + L   +T LH+      A N + + V+ +LE  
Sbjct: 1   LHLAAKNGNLE----LVKLLLEKGADVNLGDTDTALHLA-----ARNGNLEIVKLLLEHG 51

Query: 87  PALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR 119
             +  + +  G+T LH+AA+ G+ +IV++L++ 
Sbjct: 52  ADVNAK-DKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
           LH A       G+   ++ L  +      V      T +H AA +G   I  LL ++  A
Sbjct: 1   LHLAAKN----GNLELVKLLLEKGA---DVNLGDTDTALHLAARNGNLEIVKLL-LEHGA 52

Query: 272 TNIADKDRKMTALHLAAGRGHARTVETILS 301
              A      TALHLAA  G+   V+ +L 
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 33/175 (18%)

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAA--ESESSDMVLTLLENCTSLSHEGPNGKT 210
             E+VK+L  E      + ++ G TPL  A   +S S  +V  LL+N  +++ +  +G+ 
Sbjct: 85  VKEIVKLLL-EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN 143

Query: 211 ALHAAVMYFDFKGDHHAMRQLF----------GRKKSLLK------VTDQYGWTPIHYAA 254
            LH  +           + +L            R   LL       + D YG+TP+HYA 
Sbjct: 144 LLHLYLESNKIDLK---ILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 255 YHG-----KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP 304
           Y+      KY ++  L  +    N        T LH+A    +    + +L+  P
Sbjct: 201 YNNNPEFVKYLLD--LGANPNLVN----KYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 7/191 (3%)

Query: 144 ALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH 203
           AL DA+  G +++ + L     +  +   D G +P+ +A +   S+ +  L+++      
Sbjct: 5   ALCDAILFGELDIARRLLDIGINPNFEIYD-GISPIKLAMKFRDSEAIKLLMKHGAIPDV 63

Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
           + P+ ++ LH AV     +GD  A+ +L    K    V  + G TP+H A    K  I  
Sbjct: 64  KYPDIESELHDAVE----EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVA 323
           LL       +I + D+  + LHLA   G  + +E ++     C ++ D      L  A+A
Sbjct: 120 LLIARGADPDIPNTDK-FSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMA 177

Query: 324 SFQLQDLKPLL 334
              +   K LL
Sbjct: 178 KGDIAICKMLL 188

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 75/303 (24%), Positives = 126/303 (41%), Gaps = 62/303 (20%)

Query: 91  IQVNAK---GDTPLHVAAKFGHSDIVRVLI----DRAKLAQDGDEAARQMIRMVN----- 138
             VNAK     TP+H AA+ G++ +V +L+    D   +A D        +   N     
Sbjct: 169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK 228

Query: 139 ---------NKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN---DYGKTPLYMAAESE 186
                    NK + +L  A+   ++E   +L     D  +S N   D   TPL+ A+++ 
Sbjct: 229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLY----DAGFSVNSIDDCKNTPLHHASQAP 284

Query: 187 S-SDMVLTLLENCTSLSHEGPNGKTALH--AAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
           S S +V  LLE    ++ +   G+T L+  A   Y     D   +R L       +   D
Sbjct: 285 SLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGY-----DTENIRTLIMLGAD-VNAAD 338

Query: 244 QYGWTPIHYAAYHGKY--WINDLLEIDQTATNIADKDR-KMTALHLAAGRGHARTVETIL 300
           +   TP+H A+   +    +  LLE+     N+  +D    T +H AA R +   + T+L
Sbjct: 339 RLYITPLHQASTLDRNKDIVITLLEL---GANVNARDYCDKTPIHYAAVRNNVVIINTLL 395

Query: 301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARI--LINEG---DAKG---NT 352
               +  E +  +    LH+A+             NP+  +  LI+ G   ++K    +T
Sbjct: 396 DYGAD-IEALSQKIGTALHFALCG----------TNPYMSVKTLIDRGANVNSKNKDLST 444

Query: 353 PLH 355
           PLH
Sbjct: 445 PLH 447

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 11/24 (45%), Positives = 20/24 (83%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDR 119
            G+TPLH+AA+ GH ++V++L++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 61/224 (27%), Positives = 88/224 (39%), Gaps = 37/224 (16%)

Query: 154 MEVVKILTREDPDYPYSANDYGKTPL--YMA-AESESSDMVLTLLENCTSLSHEGPNGKT 210
           +E V+ L     D  +    YGKTPL  Y+  +  +  D+V  LLE    ++     G T
Sbjct: 27  VEEVRRLLAAGADVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND-----LL 265
            LH  +           + +L  +  + +   D+ G TP+H   Y   + IN      LL
Sbjct: 86  PLHLYLYN----ATTLDVIKLLIKAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLL 139

Query: 266 E--IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFEL--VDNRRWNFLHYA 321
               D  A ++      MT L     +     VE +  L     ++  VD+R  + LH+ 
Sbjct: 140 RKGADVNALDLYG----MTPLA-VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHH- 193

Query: 322 VASFQLQDLKPLLRNPFARILINEG------DAKGNTPLHVFAA 359
                LQ  KP  R    R LI  G      D  GNTPLH  A 
Sbjct: 194 ----HLQSFKP--RARIVRELIRAGCDPAATDMLGNTPLHSMAT 231

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 25/154 (16%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN-------TALHDAM 149
           GDT LH  +   + D V  ++    LA          + + N++         TALH A 
Sbjct: 82  GDTLLHAISL-EYVDAVEAIL-LHLLAAFRK---SGPLELANDQYTSEFTPGITALHLAA 136

Query: 150 FPGNMEVVKILTREDPDYPYSAN-------------DYGKTPLYMAAESESSDMVLTLLE 196
              N E+VK+L       P  A               +G++PL  AA   S  +V  L E
Sbjct: 137 HRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE 196

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
           +   +      G T LH  VM  +FK ++  +  
Sbjct: 197 DPADILTADSLGNTLLHLLVMENEFKAEYEELSC 230

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 250 IHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFEL 309
           +H AA +G   +  LL +++ A ++ +     TALHLAA  G+   V+ +L    +    
Sbjct: 1   LHLAAKNGNLELVKLL-LEKGA-DV-NLGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 310 VDNRRWNFLHYAVAS 324
            D      LH A  +
Sbjct: 57  KDKDGNTALHLAARN 71

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 82  ILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
           +LE  P  L   +  G+TPLH+AAK+G  ++V+ L+                + + ++  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-----------GVDLNLRDSDG 49

Query: 142 NTALH 146
            TAL 
Sbjct: 50  LTALD 54

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 142 NTALHDAMFPGNMEVVKIL--TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
            TALH A   G +E+VK L     D +     ++ G T L++AAE+ + +++  LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRT---DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 36/179 (20%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSD--IVRVL 116
            T L   I     ++ S   VE +L+    + I  N+ G+  LH+  +    D  I+++L
Sbjct: 107 ITPLLYAIS---KKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKILKLL 162

Query: 117 IDRA-------------KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
           ID+                    +          +    T LH A++  N E VK L   
Sbjct: 163 IDKGVDINAKNRVNYLLSYGVPINI--------KDVYGFTPLHYAVYNNNPEFVKYLLDL 214

Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK 222
             + P   N YG TPL++A  + + ++   LL N       GP+ KT +   ++YF  K
Sbjct: 215 GAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNN-------GPSIKT-IIETLLYFKDK 264

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 35/242 (14%)

Query: 145 LHDAMFPGNME-VVKILTRED--PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
           L+ +M+  N E ++K +   D   +Y  SA+     PL+ A E+ + D+V +LL    ++
Sbjct: 4   LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV 63

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS--LLKVTDQYGWTPIHYAA----- 254
           +       T LH      +  G    +R +        L+ + D +    +         
Sbjct: 64  NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTN 123

Query: 255 YHGKYWINDLLEIDQTA-------------------TNIADKDRKMTALHLAAGRGHART 295
            +      DL+ ID+ +                    N+ D+ +  TALH A      R 
Sbjct: 124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL 183

Query: 296 VETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPL 354
            E +LS        + ++  N  LH+AV  +    +  LL N  +    +  D  GNTPL
Sbjct: 184 TELLLSYGANVN--IPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKCGNTPL 238

Query: 355 HV 356
           H+
Sbjct: 239 HI 240

Length = 477

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
           NT LH+      A N +   V+ +L+    +  + +  G TPLH+AAK GH ++V++L+
Sbjct: 74  NTPLHLA-----ARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 72  ENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAAR 131
           E    K VEE+L++           G TPLH+A      DI+++LI R     D D    
Sbjct: 77  EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA---DPD---- 129

Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
               + N  K + LH A+  G+++ +++L           +  G TPL +A       + 
Sbjct: 130 ----IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAIC 184

Query: 192 LTLLENCTSLSHEGPNGKTAL 212
             LL++  ++ + G NG  A 
Sbjct: 185 KMLLDSGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 11/24 (45%), Positives = 20/24 (83%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDR 119
            G TPLH+AA+ G+ ++V++L+D+
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G T LH AA  G  ++V+ L+++              I   +   NTALH A   GN+EV
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-----------INRTDEDGNTALHIAAENGNLEV 49

Query: 157 VKIL 160
           +K+L
Sbjct: 50  LKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
           TALH A +     G    ++ L  +   + +  +  G T +H AA +G   +
Sbjct: 3   TALHKAAI----SGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 246 GWTPIHYAAYHG-----KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
           G T +H AA  G     KY +   ++I++T     D+D   TALH+AA  G+   ++ +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-----DED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.28
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.79
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.71
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.65
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.63
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.41
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.37
KOG0522	560	consensus Ankyrin repeat protein [General function	98.36
KOG0522	560	consensus Ankyrin repeat protein [General function	98.36
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.34
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.25
KOG0511	516	consensus Ankyrin repeat protein [General function	98.01
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.0
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.98
KOG2384	223	consensus Major histocompatibility complex protein	97.89
KOG2384	223	consensus Major histocompatibility complex protein	97.85
KOG0511	516	consensus Ankyrin repeat protein [General function	97.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.64
KOG2505	591	consensus Ankyrin repeat protein [General function	96.93
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.74
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.73
KOG2505	591	consensus Ankyrin repeat protein [General function	96.62
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.42
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.27
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.22
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.7
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.6
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	90.96
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.82

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.1e-52  Score=405.24  Aligned_cols=343  Identities=22%  Similarity=0.218  Sum_probs=297.3

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHh-hccccCCcchhhhhhh---------------------------------
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESL-LTLQTRNTILHINIMC---------------------------------   68 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~---------------------------------   68 (424)
                      +.+.||||.|+..|+.|+|+.|++.+++.. ..+..|+||||+|  +                                 
T Consensus        39 ~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         39 SIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTI--CIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             cccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccc--cCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            456789999999999999999999988744 7788899999987  5                                 


Q ss_pred             -------------------------------------HHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHH
Q 014436           69 -------------------------------------QDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSD  111 (424)
Q Consensus        69 -------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  111 (424)
                                                           ..++.+++++|++    .+..++.+|..|.||||+|+..|+.+
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~  192 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAK  192 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence                                                 2234445555554    37888899999999999999999999


Q ss_pred             HHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCC--------------------------
Q 014436          112 IVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDP--------------------------  165 (424)
Q Consensus       112 ~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------------  165 (424)
                      +|++|+++|++           ++..+..|.||||+|+..++.+++++|++.++                          
T Consensus       193 iv~~LL~~Gad-----------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~  261 (682)
T PHA02876        193 MVNLLLSYGAD-----------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYD  261 (682)
T ss_pred             HHHHHHHCCCC-----------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998           56677888899999988888888777766544                          


Q ss_pred             ---CCCCCCCCCCCcHHHHHHhcCCh-HHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCC-cHHHHHHHHhhcCCccc
Q 014436          166 ---DYPYSANDYGKTPLYMAAESESS-DMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG-DHHAMRQLFGRKKSLLK  240 (424)
Q Consensus       166 ---~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~-~~~~~~~Ll~~~~~~~~  240 (424)
                         +++ ..+..|.||||+|+..++. +++++|++.|++++.+|..|.||||+|+..    + ..+.++.|+..+.. ++
T Consensus       262 ~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~----g~~~~~v~~Ll~~gad-in  335 (682)
T PHA02876        262 AGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN----GYDTENIRTLIMLGAD-VN  335 (682)
T ss_pred             CCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----CCCHHHHHHHHHcCCC-CC
Confidence               333 4566799999999999986 699999999999999999999999999998    7 58999999988877 58


Q ss_pred             ccCCCCChHHHHHHhcC-ChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHH
Q 014436          241 VTDQYGWTPIHYAAYHG-KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH  319 (424)
Q Consensus       241 ~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  319 (424)
                      ..+..|.||||+|+..+ ..+++.++...+...+..+. .|.||||+|+..++.+++++|++.|+++ +..+..|.||||
T Consensus       336 ~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~-~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh  413 (682)
T PHA02876        336 AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDY-CDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALH  413 (682)
T ss_pred             CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHH
Confidence            89999999999999865 45588888888888777766 8999999999999999999999999997 778999999999


Q ss_pred             HHHHcCC-ccchHHhhhCCccccccccccCCCCcHHHHHHhcC-CcchhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436          320 YAVASFQ-LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR-PSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYG  394 (424)
Q Consensus       320 ~A~~~~~-~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~-~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~  394 (424)
                      +|+..+. ..+++.|++.   |+++|.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|.||+++|...
T Consensus       414 ~A~~~~~~~~~vk~Ll~~---gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~-~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        414 FALCGTNPYMSVKTLIDR---GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD-NGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHcCCHHHHHHHHHhC---CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHh
Confidence            9987665 4678999988   9999999999999999999977 5799988888 8999999999999999999854

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.9e-49  Score=361.68  Aligned_cols=338  Identities=13%  Similarity=0.062  Sum_probs=226.3

Q ss_pred             cCCCHHHHHHHHcC--CCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcH
Q 014436           23 SQTDPKLLKAAADG--NAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTP  100 (424)
Q Consensus        23 ~~~~~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (424)
                      ++..++||.++..+  +.++|+.|++.|++++..+..|.||||+|  +..|+.+++++|++.    ++.++.+|..|.||
T Consensus        35 ~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~~----GAdin~~d~~g~Tp  108 (446)
T PHA02946         35 SGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLTH----GADPNACDKQHKTP  108 (446)
T ss_pred             CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCH
Confidence            33456666655332  45677777777776666666777777777  777777777777664    56666677777777


Q ss_pred             HHHHHHcCc--HHHHHHHHHhchhcccchHHHHHHHH-HhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCc
Q 014436          101 LHVAAKFGH--SDIVRVLIDRAKLAQDGDEAARQMIR-MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKT  177 (424)
Q Consensus       101 L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~i~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  177 (424)
                      ||+|+..++  .+++++|+++|++           ++ ..|.+|.|||| |+..++.+++++|++.|++++ ..+..|+|
T Consensus       109 Lh~A~~~~~~~~e~v~lLl~~Gad-----------in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t  175 (446)
T PHA02946        109 LYYLSGTDDEVIERINLLVQYGAK-----------INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKN  175 (446)
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCC-----------cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCC
Confidence            777766543  6677777777766           33 34667777775 445566777777777777654 56666777


Q ss_pred             HHHHHHhcCC--hHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436          178 PLYMAAESES--SDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY  255 (424)
Q Consensus       178 ~L~~A~~~~~--~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  255 (424)
                      |||+|+..++  .+++++|+++|++++.+|..|.||||+|+..+.  ++.++++.|+. +. +++.+|..|.||||+|+.
T Consensus       176 ~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~--~~~~iv~lLl~-ga-din~~d~~G~TpLh~A~~  251 (446)
T PHA02946        176 HIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV--KNVDIINLLLP-ST-DVNKQNKFGDSPLTLLIK  251 (446)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC--CcHHHHHHHHc-CC-CCCCCCCCCCCHHHHHHH
Confidence            7777665443  466777777777777777777777777776510  25566666663 33 356677777777777777


Q ss_pred             cCCh-hHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhh
Q 014436          256 HGKY-WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL  334 (424)
Q Consensus       256 ~~~~-~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  334 (424)
                      .++. ++.++|...+...      .++ +++.|+..+..++++.+.+.|.       ..|.||||+|+.+|+.+++++|+
T Consensus       252 ~~~~~~~~~~Ll~~g~~~------~~~-~~~~a~~~~~~~~~e~l~~~g~-------~~~~TpLh~Aa~~g~~eivk~Ll  317 (446)
T PHA02946        252 TLSPAHLINKLLSTSNVI------TDQ-TVNICIFYDRDDVLEIINDKGK-------QYDSTDFKMAVEVGSIRCVKYLL  317 (446)
T ss_pred             hCChHHHHHHHHhCCCCC------CCc-HHHHHHHcCchHHHHHHHHcCc-------ccCCCHHHHHHHcCCHHHHHHHH
Confidence            6653 4555555544321      122 2566666666666666665543       24679999999999999999999


Q ss_pred             hCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHHHhhhhh
Q 014436          335 RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKS  411 (424)
Q Consensus       335 ~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~  411 (424)
                      +.   +       ..|+||||+|+..++.++++.|+. +|++++.+ ..|+||+|+|.. ..+...++ .+++.-+.
T Consensus       318 ~~---~-------~~~~t~L~~A~~~~~~~~v~~Ll~-~ga~~n~~-~~G~t~l~~a~~-~~~~~~~~-~ll~~~~~  380 (446)
T PHA02946        318 DN---D-------IICEDAMYYAVLSEYETMVDYLLF-NHFSVDSV-VNGHTCMSECVR-LNNPVILS-KLMLHNPT  380 (446)
T ss_pred             HC---C-------CccccHHHHHHHhCHHHHHHHHHH-CCCCCCCc-cccccHHHHHHH-cCCHHHHH-HHHhcCcc
Confidence            86   3       257899999999999999988887 79999986 579999999974 35555555 33344333

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-48  Score=377.95  Aligned_cols=349  Identities=19%  Similarity=0.123  Sum_probs=296.7

Q ss_pred             HHHHHHHcCCCchhHHHHH------HHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHH
Q 014436           28 KLLKAAADGNAEPFKDMAR------EVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPL  101 (424)
Q Consensus        28 ~l~~A~~~g~~~~v~~ll~------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (424)
                      .|+.|+..|+.+-+..+++      .|.++...+..++||||+|  ++.|+.++|+.|++.   ++..+...|..|.|||
T Consensus         5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A--~~~g~~e~V~~ll~~---~~~~~~~~~~~~~tpL   79 (682)
T PHA02876          5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQA--LQLRQIDIVEEIIQQ---NPELIYITDHKCHSTL   79 (682)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHH--HHHHhhhHHHHHHHh---Ccccchhhchhhcccc
Confidence            4899999999865444444      3554455566899999999  999999999999887   5666777888999999


Q ss_pred             HHHH----------------------------------------------------------------------HcCcHH
Q 014436          102 HVAA----------------------------------------------------------------------KFGHSD  111 (424)
Q Consensus       102 ~~A~----------------------------------------------------------------------~~g~~~  111 (424)
                      |+|+                                                                      ..|+.+
T Consensus        80 h~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  159 (682)
T PHA02876         80 HTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL  159 (682)
T ss_pred             ccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHH
Confidence            9666                                                                      456788


Q ss_pred             HHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHH
Q 014436          112 IVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV  191 (424)
Q Consensus       112 ~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  191 (424)
                      ++++|++.|++           ++.+|..|.||||+|+..|+.++|++|+++|++++ ..+..|.||||.|+..++.+++
T Consensus       160 i~k~Ll~~Gad-----------vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~~~~~~iv  227 (682)
T PHA02876        160 IAEMLLEGGAD-----------VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVDSKNIDTI  227 (682)
T ss_pred             HHHHHHhCCCC-----------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHHHHcCCHHHH
Confidence            89999999988           67788999999999999999999999999999976 6778899999999998888777


Q ss_pred             HHHHH-----------------------------hCCCCCCCCCCCCcHHHHHHHccccCCcH-HHHHHHHhhcCCcccc
Q 014436          192 LTLLE-----------------------------NCTSLSHEGPNGKTALHAAVMYFDFKGDH-HAMRQLFGRKKSLLKV  241 (424)
Q Consensus       192 ~~Ll~-----------------------------~~~~~~~~~~~~~t~L~~a~~~~~~~~~~-~~~~~Ll~~~~~~~~~  241 (424)
                      +.|++                             .|++++..+..|.||||+|+..    ++. ++++.|+..+.. ++.
T Consensus       228 k~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~----~~~~~iv~lLl~~gad-in~  302 (682)
T PHA02876        228 KAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA----PSLSRLVPKLLERGAD-VNA  302 (682)
T ss_pred             HHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC----CCHHHHHHHHHHCCCC-CCC
Confidence            66554                             4556777788999999999998    775 578888887776 688


Q ss_pred             cCCCCChHHHHHHhcC-ChhHHHHHhhccccccccccCCCchHHHHHHhc-CCHHHHHHHHhhCCCccccccCCCCcHHH
Q 014436          242 TDQYGWTPIHYAAYHG-KYWINDLLEIDQTATNIADKDRKMTALHLAAGR-GHARTVETILSLAPECFELVDNRRWNFLH  319 (424)
Q Consensus       242 ~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  319 (424)
                      .+..|.||||+|+..| ..+++++|...+...+..+. .|.||||+|+.. ++.++++.|++.|+++ +.+|..|+||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~-~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR-LYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc-CCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHH
Confidence            9999999999999998 46688888888887777665 899999999985 5789999999999997 889999999999


Q ss_pred             HHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCc-chhhhhccccchhhhhhcCCCCchhhHHhhcCchh
Q 014436          320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS-EFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPEL  398 (424)
Q Consensus       320 ~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~-~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~  398 (424)
                      +|+..++.++++.|++.   |++++..+..|.||||+|+..++. .+++.|+. +|++++.+|..|+||||+|+....+.
T Consensus       381 ~Aa~~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~  456 (682)
T PHA02876        381 YAAVRNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKL  456 (682)
T ss_pred             HHHHcCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcH
Confidence            99999999999999998   999999999999999999987765 45666666 89999999999999999998765566


Q ss_pred             hHHHHH
Q 014436          399 LVINLS  404 (424)
Q Consensus       399 ~~~~~~  404 (424)
                      .++++.
T Consensus       457 ~iv~lL  462 (682)
T PHA02876        457 DVIEML  462 (682)
T ss_pred             HHHHHH
Confidence            666633

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=353.20  Aligned_cols=300  Identities=14%  Similarity=0.130  Sum_probs=262.9

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHh--hhccHHHHHHHHHhCchhhhh-hccCCCc
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDA--ENASTKFVEEILEICPALLIQ-VNAKGDT   99 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~~~l~~~~~~~~~~~~~-~~~~g~t   99 (424)
                      ..+.||||+|+..|+.++|+.|++.|++++..+..|.||||+|  +..+  ..+++++|++.    ++.++. .|..|.|
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A--~~~~~~~~e~v~lLl~~----Gadin~~~d~~g~t  143 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL--SGTDDEVIERINLLVQY----GAKINNSVDEEGCG  143 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCchHHHHHHHHHc----CCCcccccCCCCCc
Confidence            5678999999999999999999999999889999999999999  7655  47788888876    777774 6889999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCC--CHHHHHHHhhcCCCCCCCCCCCCCc
Q 014436          100 PLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG--NMEVVKILTREDPDYPYSANDYGKT  177 (424)
Q Consensus       100 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t  177 (424)
                      ||| |+..|+.+++++|++.|++           ++..|..|+||||+|+..+  +.+++++|++.|++++ .+|..|.|
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad-----------~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~d~~G~T  210 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFE-----------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KPDHDGNT  210 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhcccc-----------ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            997 7778999999999999988           6788999999999988754  4699999999999977 78889999


Q ss_pred             HHHHHHhcC--ChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCc-HHHHHHHHhhcCCcccccCCCCChHHHHHH
Q 014436          178 PLYMAAESE--SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD-HHAMRQLFGRKKSLLKVTDQYGWTPIHYAA  254 (424)
Q Consensus       178 ~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  254 (424)
                      |||+|+..+  +.+++++|++ |++++.+|..|.||||+|+..    ++ .++++.|+..+...      .++ +++.++
T Consensus       211 pLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~----~~~~~~~~~Ll~~g~~~------~~~-~~~~a~  278 (446)
T PHA02946        211 PLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT----LSPAHLINKLLSTSNVI------TDQ-TVNICI  278 (446)
T ss_pred             HHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHh----CChHHHHHHHHhCCCCC------CCc-HHHHHH
Confidence            999999986  7889999985 899999999999999999998    76 47888999877542      133 388999


Q ss_pred             hcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhh
Q 014436          255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL  334 (424)
Q Consensus       255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  334 (424)
                      ..+..++.+++...+.       ..|.||||+|+..|+.+++++|+++|+        .|.||||+|+..++.++++.|+
T Consensus       279 ~~~~~~~~e~l~~~g~-------~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~~v~~Ll  343 (446)
T PHA02946        279 FYDRDDVLEIINDKGK-------QYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYETMVDYLL  343 (446)
T ss_pred             HcCchHHHHHHHHcCc-------ccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHHHHHHHH
Confidence            8888888888866543       257799999999999999999999764        4689999999999999999999


Q ss_pred             hCCccccccccccCCCCcHHHHHHhcCCcchhhhhccc
Q 014436          335 RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRT  372 (424)
Q Consensus       335 ~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~  372 (424)
                      ..   |+++|.. ..|.||||+|++.++.++++.||..
T Consensus       344 ~~---ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        344 FN---HFSVDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             HC---CCCCCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            98   8999986 5899999999999999999999983

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.6e-47  Score=350.04  Aligned_cols=376  Identities=13%  Similarity=0.011  Sum_probs=294.1

Q ss_pred             cCCCHHHHHHHHcC---CCchhHHHHHHHHHHhhccccCCcchhhhhhhHHh--hhccHHHHHHHHHhCchhhhhhccCC
Q 014436           23 SQTDPKLLKAAADG---NAEPFKDMAREVIESLLTLQTRNTILHINIMCQDA--ENASTKFVEEILEICPALLIQVNAKG   97 (424)
Q Consensus        23 ~~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~g   97 (424)
                      ..+.||||+|+..|   +.|+|+.|++.|+++..+|..|.||||+|  +..+  +.+++++|++...  ++..+..+..+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~~~~--~~~~~~~~~~~  114 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLISSYS--NASNELTSNIN  114 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHhcCC--CCCcccccccC
Confidence            46789999999997   59999999999999999999999999999  8866  7999999998621  23345577779


Q ss_pred             CcHHHHHHH--cCcHHHHHHHHH-hchhcccchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHHhhcCCCCC-----
Q 014436           98 DTPLHVAAK--FGHSDIVRVLID-RAKLAQDGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKILTREDPDYP-----  168 (424)
Q Consensus        98 ~t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-----  168 (424)
                      .+|||.++.  +++.++|++|++ .+.+++..       .+..+ ..|.+|++++...++.++|++|+++|+++.     
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~-------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN-------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhh-------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccc
Confidence            999999998  889999999997 44553210       11222 378999999999999999999999999973     


Q ss_pred             -C-CCCCCCCcHHHHHH------hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHh-------
Q 014436          169 -Y-SANDYGKTPLYMAA------ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG-------  233 (424)
Q Consensus       169 -~-~~~~~g~t~L~~A~------~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~-------  233 (424)
                       . ..+..+.|.||+++      .+++.+++++|+++|++++.+|..|+||||++...  ..++.+++++|++       
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~--~~~~~eiv~~Li~~~~~~~~  265 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSC--STIDIEIVKLLIKDVDTCSV  265 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CcccHHHHHHHHhccccccc
Confidence             1 22223345556443      45789999999999999999999999999964332  1267999999998       


Q ss_pred             -------------------------hcCCcccc--------------------cCCCCCh--------------------
Q 014436          234 -------------------------RKKSLLKV--------------------TDQYGWT--------------------  248 (424)
Q Consensus       234 -------------------------~~~~~~~~--------------------~~~~~~t--------------------  248 (424)
                                               .+.+. ..                    .+..|.+                    
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q  344 (672)
T PHA02730        266 YDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQ  344 (672)
T ss_pred             cccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHH
Confidence                                     23221 11                    4455544                    


Q ss_pred             -HHHHHHhcC---ChhHHHHHhhccccccccccCCCchHHHHHHhcCC----HHHHHHHHhhCCC-ccccccCCCCcHHH
Q 014436          249 -PIHYAAYHG---KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH----ARTVETILSLAPE-CFELVDNRRWNFLH  319 (424)
Q Consensus       249 -~l~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~-~~~~~~~~g~t~l~  319 (424)
                       .|+.....+   +.+++++|..++...+..  ..|.||||+|+..++    .+++++|+++|++ ..+.+|..|.||||
T Consensus       345 ~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        345 AMLINYLHYGDMVSIPILRCMLDNGATMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence             567777766   355999999999887764  489999999988875    8999999999984 34888999999999


Q ss_pred             H---HHHcC---------CccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC-CCCc
Q 014436          320 Y---AVASF---------QLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND-QNVS  386 (424)
Q Consensus       320 ~---A~~~~---------~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~-~g~t  386 (424)
                      .   |...+         ..+++++|+++   |+++|.+|..|+||||+|+..++.+++++|+. +|++++.+|. .|+|
T Consensus       423 ~~i~a~~~n~~~~~~e~~~~~ivk~LIs~---GADINakD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~T  498 (672)
T PHA02730        423 GLILSRFNNCGYHCYETILIDVFDILSKY---MDDIDMIDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINT  498 (672)
T ss_pred             HHHHHHhccccccccchhHHHHHHHHHhc---ccchhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcC
Confidence            4   33232         12458999998   99999999999999999999999999999988 8999999997 5999


Q ss_pred             hhhHHhhc-CchhhHHHHHHHhhhhhhhhhHhhh
Q 014436          387 VGHIMKYG-YPELLVINLSILSTYKSRFLFHYLF  419 (424)
Q Consensus       387 ~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  419 (424)
                      |+|+|+.. .++...++ .+++..+....+..+|
T Consensus       499 aL~~Aa~~~~~~~eIv~-~LLs~ga~i~~I~~Tf  531 (672)
T PHA02730        499 AIQKSSYRRENKTKLVD-LLLSYHPTLETMIDAF  531 (672)
T ss_pred             HHHHHHHhhcCcHHHHH-HHHHcCCCHHHHHHHH
Confidence            99999763 35566666 4456556555666654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.2e-47  Score=342.77  Aligned_cols=336  Identities=25%  Similarity=0.234  Sum_probs=302.9

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      ..+++++|.|+..+.+      +++-......|..|.+|||+|  +.....+.+++|++.    |++....+..+.+|+|
T Consensus        59 ~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a--~~~~~~~~i~~Lls~----gad~~~~n~~~~aplh  126 (929)
T KOG0510|consen   59 AFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAA--VEYNQGDKIQVLLSY----GADTPLRNLNKNAPLH  126 (929)
T ss_pred             hhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHH--hhcchHHHHHHHHhc----CCCCChhhhhccCchh
Confidence            3456778888887766      333333446777899999999  999999999999997    8888889999999999


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA  182 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  182 (424)
                      +|+..|..+..+.|+++|++           ++..|..|.||||.|+..++.|..+.|++.|+++. ..+.+|.+|+|.|
T Consensus       127 ~A~~~~~~s~L~~Ll~~~~d-----------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~a  194 (929)
T KOG0510|consen  127 LAADSGNYSCLKLLLDYGAD-----------VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEA  194 (929)
T ss_pred             hccccchHHHHHHHHHhcCC-----------ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHH
Confidence            99999999999999999988           78889999999999999999998899999999965 7888999999999


Q ss_pred             HhcCChHHHHHHHH-----hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc--------------ccccC
Q 014436          183 AESESSDMVLTLLE-----NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL--------------LKVTD  243 (424)
Q Consensus       183 ~~~~~~~~v~~Ll~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~--------------~~~~~  243 (424)
                      +++|..++.+.++.     ++..++..+..+.+|||.|+..    |+.++++.+++.+...              ++..|
T Consensus       195 a~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~----g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d  270 (929)
T KOG0510|consen  195 ARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG----GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED  270 (929)
T ss_pred             HHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc----CCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc
Confidence            99999999999998     6688999999999999999999    9999999999887643              45678


Q ss_pred             CCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHH
Q 014436          244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS-LAPECFELVDNRRWNFLHYAV  322 (424)
Q Consensus       244 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~  322 (424)
                      .+|.||||+|++.|..+.+..|...+..++..+. ++.||||.|++.|+.+.|+.|++ .+....+..|-.|.||||+|+
T Consensus       271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESVDNLLGFGASINSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             ccCCchHHHHHHcCChhHHHHHHHcCCcccccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence            9999999999999999999999999998887775 88999999999999999999999 666667888999999999999


Q ss_pred             HcCCccchHHhhhCCccccccc---cccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436          323 ASFQLQDLKPLLRNPFARILIN---EGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       323 ~~~~~~~~~~ll~~~~~~~~i~---~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a  391 (424)
                      ++|+..+++.|+..   |++..   ..|.+|+||||.|+.+|+..++++|+. +|+++..+|..|+|++++-
T Consensus       350 ~~gH~~v~qlLl~~---GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~~  417 (929)
T KOG0510|consen  350 KSGHDRVVQLLLNK---GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDTR  417 (929)
T ss_pred             hcCHHHHHHHHHhc---ChhhhcccccccCCchhhhHHHHhccHHHHHHHHH-cCCceeecccccccccccc
Confidence            99999999999998   77766   569999999999999999999999999 8999999999999999964

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-45  Score=340.75  Aligned_cols=338  Identities=18%  Similarity=0.139  Sum_probs=285.9

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHH-HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIE-SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA  105 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  105 (424)
                      ..|..|+..|+++.|+.|++.+.. .+..+..|.||||.|  ++.|+.+++++|++.    +..++..+..|.||||.|+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A--~~~g~~~iv~~Ll~~----Ga~~n~~~~~~~t~L~~A~   76 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDA--IRSGDAKIVELFIKH----GADINHINTKIPHPLLTAI   76 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHH
Confidence            358999999999999999986554 336667899999999  999999999999986    7888889999999999999


Q ss_pred             HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhc
Q 014436          106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES  185 (424)
Q Consensus       106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  185 (424)
                      ..|+.+++++|+++|++..                   .  .+......++++.|++.|.+++ ..+..|.||||+|+..
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~-------------------~--~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~  134 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTS-------------------I--LPIPCIEKDMIKTILDCGIDVN-IKDAELKTFLHYAIKK  134 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCC-------------------c--chhccCCHHHHHHHHHCcCCCC-CCCCCCccHHHHHHHC
Confidence            9999999999999998631                   1  1233457899999999999977 6788899999999999


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHH
Q 014436          186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL  265 (424)
Q Consensus       186 ~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  265 (424)
                      |+.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|
T Consensus       135 ~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~----~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~L  209 (434)
T PHA02874        135 GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH----NFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLL  209 (434)
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC----CcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999    999999999999876 478899999999999999999999999


Q ss_pred             hhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC-CccchHHhhhCCccccccc
Q 014436          266 EIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASF-QLQDLKPLLRNPFARILIN  344 (424)
Q Consensus       266 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~ll~~~~~~~~i~  344 (424)
                      ...+........ .|.||||.|+..+. +.+++|+ .++++ +.+|..|+||||+|+..+ +.+++++|++.   |++++
T Consensus       210 l~~g~~i~~~~~-~g~TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~---gad~n  282 (434)
T PHA02874        210 IDHGNHIMNKCK-NGFTPLHNAIIHNR-SAIELLI-NNASI-NDQDIDGSTPLHHAINPPCDIDIIDILLYH---KADIS  282 (434)
T ss_pred             HhCCCCCcCCCC-CCCCHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCCCCCHHHHHHhcCCcHHHHHHHHHC---cCCCC
Confidence            888877666655 89999999998765 5677776 47775 789999999999999875 78999999998   99999


Q ss_pred             cccCCCCcHHHHHHhcC-CcchhhhhccccchhhhhhcCCC-CchhhHH-hhcCchhhHHHHHH
Q 014436          345 EGDAKGNTPLHVFAAVR-PSEFNRYMSRTTHANYQAVNDQN-VSVGHIM-KYGYPELLVINLSI  405 (424)
Q Consensus       345 ~~d~~g~t~L~~A~~~~-~~~~~~~LL~~~g~~~~~~~~~g-~t~l~~a-~~~~~~~~~~~~~~  405 (424)
                      .+|..|+||||+|++++ ..++++.|+. .++.++..+..+ .+++..+ ....+++..+...+
T Consensus       283 ~~d~~g~TpL~~A~~~~~~~~~ik~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c  345 (434)
T PHA02874        283 IKDNKGENPIDTAFKYINKDPVIKDIIA-NAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKEC  345 (434)
T ss_pred             CCCCCCCCHHHHHHHhCCccHHHHHHHH-hcCchhhccccchhHHHHHHHHhccchHHHHHHHH
Confidence            99999999999999988 5667777777 677776666555 4455554 22334444444333

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2e-45  Score=347.64  Aligned_cols=336  Identities=15%  Similarity=0.058  Sum_probs=226.5

Q ss_pred             HcCCCchhHHHHHHH-HHHhhc-cccCCcchhhhhhhH--HhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCc
Q 014436           34 ADGNAEPFKDMAREV-IESLLT-LQTRNTILHINIMCQ--DAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGH  109 (424)
Q Consensus        34 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  109 (424)
                      +.++.++|++|++.| ++.+.. +..|.||||+|  +.  +++.+++++|++.    +.+++.+|..|.||||+|+..|+
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A--~~n~~~~~eIVklLLe~----GADVN~kD~~G~TPLH~Aa~~g~  224 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAY--LGNMYVDIDILEWLCNN----GVNVNLQNNHLITPLHTYLITGN  224 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHH--HHhccCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCC
Confidence            468999999999999 877766 77899999988  54  3567899998886    88899999999999999999995


Q ss_pred             --HHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHH---hCCCHHHHHHHhhcCCCCCCCCCCCCCcHHH---H
Q 014436          110 --SDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM---FPGNMEVVKILTREDPDYPYSANDYGKTPLY---M  181 (424)
Q Consensus       110 --~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~---~  181 (424)
                        .++|++|+++|++           ++.+|..|+||||+|+   .+++.++++.+++.+.... ..  ...++++   .
T Consensus       225 ~~~eIVklLLe~GAD-----------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~~--~~~~~L~~~i~  290 (764)
T PHA02716        225 VCASVIKKIIELGGD-----------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-VK--NIPMILHSYIT  290 (764)
T ss_pred             CCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-cc--cchhhhHHHHH
Confidence              5899999999998           6778899999999875   4567777777776543211 11  1122233   3


Q ss_pred             HHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh------
Q 014436          182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY------  255 (424)
Q Consensus       182 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~------  255 (424)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+...  .++.+++++|++.++. ++.+|..|+||||+|+.      
T Consensus       291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~--~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~  367 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH--NISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVN  367 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh--CCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhc
Confidence            56777778888888888777777777888887765421  0466777777777665 47777778888877654      


Q ss_pred             --------cCChhHHHHHhhccccccccccCCCchHHHH----HHhcCCHHHHHHHHhhCCCccc-------cccCCCCc
Q 014436          256 --------HGKYWINDLLEIDQTATNIADKDRKMTALHL----AAGRGHARTVETILSLAPECFE-------LVDNRRWN  316 (424)
Q Consensus       256 --------~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~----a~~~~~~~~v~~Ll~~~~~~~~-------~~~~~g~t  316 (424)
                              .++.+++++|...+...+..+. .|.||||.    |...++.+++++|++.+.....       .....+.+
T Consensus       368 ~ld~~~~~~~~~eVVklLL~~GADIn~kn~-~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~  446 (764)
T PHA02716        368 ILDPETDNDIRLDVIQCLISLGADITAVNC-LGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDT  446 (764)
T ss_pred             cccccccccChHHHHHHHHHCCCCCCCcCC-CCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcc
Confidence                    2455677777777766665554 77788873    2234567777777776543200       01112222


Q ss_pred             H--HHHHHHcCCccchHHhhhCC---------------ccccccccccCCCCcHHHHHHhcCCcchh-----hhhccccc
Q 014436          317 F--LHYAVASFQLQDLKPLLRNP---------------FARILINEGDAKGNTPLHVFAAVRPSEFN-----RYMSRTTH  374 (424)
Q Consensus       317 ~--l~~A~~~~~~~~~~~ll~~~---------------~~~~~i~~~d~~g~t~L~~A~~~~~~~~~-----~~LL~~~g  374 (424)
                      |  +|.++..+..+....+.+..               ..+.+++..|..|+||||+|+..|+.+.+     ++||+ .|
T Consensus       447 ~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~G  525 (764)
T PHA02716        447 PCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQ  525 (764)
T ss_pred             hhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CC
Confidence            2  44444433332222211100               01455667777777777777777665433     66666 67


Q ss_pred             hhhhhhcCCCCchhhHHhhc
Q 014436          375 ANYQAVNDQNVSVGHIMKYG  394 (424)
Q Consensus       375 ~~~~~~~~~g~t~l~~a~~~  394 (424)
                      ++++.+|..|+||||+|..+
T Consensus       526 ADIN~~d~~G~TPLh~A~~~  545 (764)
T PHA02716        526 YNINIPTKNGVTPLMLTMRN  545 (764)
T ss_pred             CCCcccCCCCCCHHHHHHHc
Confidence            77777777777777777643

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-45  Score=348.35  Aligned_cols=357  Identities=14%  Similarity=0.035  Sum_probs=269.5

Q ss_pred             ccCCCHHHHHHHHc---CCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC
Q 014436           22 QSQTDPKLLKAAAD---GNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD   98 (424)
Q Consensus        22 ~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (424)
                      .+.+.||||+|+..   |+.++|+.|++.|.++...+..|.||||+|  +..|+.++++.+.+.+-......+..+  ..
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~  104 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNIND--FN  104 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCC--cc
Confidence            35678999997555   889999999999999888888999999999  999997776555554322111122222  23


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHH--hCCCHHHHHHHhhcCCCCCCC--CCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM--FPGNMEVVKILTREDPDYPYS--ANDY  174 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~--~~~~  174 (424)
                      +++|.|+.+|+.++|++|+++|++           ++.+|..|.||||.|+  ..|+.+++++|+++|++++..  .+..
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gad-----------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~  173 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFD-----------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEY  173 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCC-----------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccc
Confidence            678889999999999999999999           7788999999999654  578999999999999997622  1223


Q ss_pred             C-----------CcHHHHHHh-----------cCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcH--HHHHH
Q 014436          175 G-----------KTPLYMAAE-----------SESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDH--HAMRQ  230 (424)
Q Consensus       175 g-----------~t~L~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~--~~~~~  230 (424)
                      |           .||||+|+.           +++.+++++|+++|++++.+|..|.||||+|+..    ++.  ++++.
T Consensus       174 g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~----g~~~~eivk~  249 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS----SHIDIDIVKL  249 (661)
T ss_pred             ccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc----CCCcHHHHHH
Confidence            3           599999986           4688999999999999999999999999999998    664  79999


Q ss_pred             HHhhcCCcc---cccCCCCChHHHHHHhc------C---ChhHHHHHhhccccccc-------ccc-----------CCC
Q 014436          231 LFGRKKSLL---KVTDQYGWTPIHYAAYH------G---KYWINDLLEIDQTATNI-------ADK-----------DRK  280 (424)
Q Consensus       231 Ll~~~~~~~---~~~~~~~~t~l~~a~~~------~---~~~~~~~l~~~~~~~~~-------~~~-----------~~~  280 (424)
                      |+. +....   ...+..+.+++++|+..      .   +.+++++|...+.....       ...           ..+
T Consensus       250 Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (661)
T PHA02917        250 LMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNS  328 (661)
T ss_pred             HHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhch
Confidence            875 54321   24566778888888731      1   44578787777654211       001           112


Q ss_pred             chHHHH---HHhcCC--HHHHHHHHhhCCCcc-----------------------------ccccCCCCcHHHHHHHcCC
Q 014436          281 MTALHL---AAGRGH--ARTVETILSLAPECF-----------------------------ELVDNRRWNFLHYAVASFQ  326 (424)
Q Consensus       281 ~t~l~~---a~~~~~--~~~v~~Ll~~~~~~~-----------------------------~~~~~~g~t~l~~A~~~~~  326 (424)
                      .+++|.   ++..|.  .+++++|++.|+++.                             ...+..|.||||.|++++.
T Consensus       329 ~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~  408 (661)
T PHA02917        329 DVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNY  408 (661)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcc
Confidence            233332   223454  447777777666531                             2234569999999875432


Q ss_pred             -----------------------ccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCC
Q 014436          327 -----------------------LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQ  383 (424)
Q Consensus       327 -----------------------~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~  383 (424)
                                             .++++.|+++   |+++|.+|..|+||||+|+..++.+++++|+. +|++++.+|..
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~-~GAdin~~d~~  484 (661)
T PHA02917        409 GCYNFYTYTYKKGLCDMSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNKQSLVSLLLE-SGSDVNIRSNN  484 (661)
T ss_pred             cchhhhhhhhhhccchhhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCC
Confidence                                   4567889988   99999999999999999999999999999988 89999999999


Q ss_pred             CCchhhHHhhcCchhhHHH
Q 014436          384 NVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       384 g~t~l~~a~~~~~~~~~~~  402 (424)
                      |+||+++|.....+...++
T Consensus       485 G~T~L~~A~~~~~~~~iv~  503 (661)
T PHA02917        485 GYTCIAIAINESRNIELLK  503 (661)
T ss_pred             CCCHHHHHHHhCCCHHHHH
Confidence            9999999985334445444

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-44  Score=333.74  Aligned_cols=302  Identities=21%  Similarity=0.224  Sum_probs=265.8

Q ss_pred             chhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCC
Q 014436           61 ILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK  140 (424)
Q Consensus        61 ~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~  140 (424)
                      .|..|  +.+|+.+.++.|++.   .+..++..+..|.||||.|+..|+.++|++|++.|++           ++..+..
T Consensus         4 ~l~~a--i~~gd~~~v~~ll~~---~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-----------~n~~~~~   67 (434)
T PHA02874          4 DLRMC--IYSGDIEAIEKIIKN---KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-----------INHINTK   67 (434)
T ss_pred             HHHHH--HhcCCHHHHHHHHHc---CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------CCCCCCC
Confidence            57788  999999999998875   4566777888999999999999999999999999998           5677889


Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD  220 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~  220 (424)
                      |.||||.|+..|+.+++++|+++|++...           .+......++++.|++.|++++.++..|.||||+|+..  
T Consensus        68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~--  134 (434)
T PHA02874         68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK--  134 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHC--
Confidence            99999999999999999999999987531           12334568999999999999999999999999999999  


Q ss_pred             cCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436          221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL  300 (424)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  300 (424)
                        ++.+++++|++.++. ++..+..|.||||+|+..++.+++++|...+...+..+. .|.||||+|+..|+.+++++|+
T Consensus       135 --~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~g~~~iv~~Ll  210 (434)
T PHA02874        135 --GDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-NGESPLHNAAEYGDYACIKLLI  210 (434)
T ss_pred             --CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH
Confidence              999999999998877 588899999999999999999999999988877666665 8999999999999999999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcC-Ccchhhhhccccchhhhh
Q 014436          301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR-PSEFNRYMSRTTHANYQA  379 (424)
Q Consensus       301 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~-~~~~~~~LL~~~g~~~~~  379 (424)
                      +.|+++ +.++..|.||||.|+..+. +.+++|+.    +++++.+|..|+||||+|+..+ +.+++++||. +|++++.
T Consensus       211 ~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-~gad~n~  283 (434)
T PHA02874        211 DHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPCDIDIIDILLY-HKADISI  283 (434)
T ss_pred             hCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-CcCCCCC
Confidence            999996 7789999999999999765 56666664    8889999999999999999876 6799988888 8999999


Q ss_pred             hcCCCCchhhHHhhcCchhhHHH
Q 014436          380 VNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       380 ~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      +|..|+||+++|.+......+++
T Consensus       284 ~d~~g~TpL~~A~~~~~~~~~ik  306 (434)
T PHA02874        284 KDNKGENPIDTAFKYINKDPVIK  306 (434)
T ss_pred             CCCCCCCHHHHHHHhCCccHHHH
Confidence            99999999999976533444444

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.4e-45  Score=329.40  Aligned_cols=348  Identities=21%  Similarity=0.222  Sum_probs=296.9

Q ss_pred             cccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC
Q 014436           19 AANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD   98 (424)
Q Consensus        19 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (424)
                      .+..+.+.++||+|+...-.+.|+.|++.|++....+..+.+|+|+|  +..+..++++.|+++    +.+++..|..|.
T Consensus        82 ~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A--~~~~~~s~L~~Ll~~----~~dvnl~de~~~  155 (929)
T KOG0510|consen   82 YAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLA--ADSGNYSCLKLLLDY----GADVNLEDENGF  155 (929)
T ss_pred             hhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhc--cccchHHHHHHHHHh----cCCccccccCCC
Confidence            34456778899999999999999999999999889999999999999  999999999999998    789999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhh-----cCCCCCCCCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR-----EDPDYPYSAND  173 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~  173 (424)
                      ||||.||..++.|..+.|+++|++           +...|..|.+|+|.|+++|..++.+.+++     +...++ ..+.
T Consensus       156 TpLh~A~~~~~~E~~k~Li~~~a~-----------~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n  223 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELINKGAD-----------PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNN  223 (929)
T ss_pred             chhhHHHhcChHHHHHHHHhcCCC-----------CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccC
Confidence            999999999999988999999999           55778899999999999999999999998     444544 5566


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCC---------------CCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTS---------------LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL  238 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~  238 (424)
                      .|.||||.|+..|+.++++.++++|..               ++.+|.+|.||||+|+..    |+.+.+..|+..+++ 
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~----G~~~svd~Ll~~Ga~-  298 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ----GGPESVDNLLGFGAS-  298 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc----CChhHHHHHHHcCCc-
Confidence            799999999999999999999999854               345688999999999999    999999999999988 


Q ss_pred             ccccCCCCChHHHHHHhcCChh-HHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccc--cccCCCC
Q 014436          239 LKVTDQYGWTPIHYAAYHGKYW-INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFE--LVDNRRW  315 (424)
Q Consensus       239 ~~~~~~~~~t~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~  315 (424)
                      ++.++.++.||||.|+.+|+.. +.++|.+.........+..|.||||.|+++|+.++++.|++.|+...+  ..|.+|.
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~  378 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGN  378 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCc
Confidence            6899999999999999999999 555665233333333445899999999999999999999999999865  4499999


Q ss_pred             cHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHH-Hhc---------C-----------Ccchhhhhccccc
Q 014436          316 NFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVF-AAV---------R-----------PSEFNRYMSRTTH  374 (424)
Q Consensus       316 t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A-~~~---------~-----------~~~~~~~LL~~~g  374 (424)
                      ||||.|+..|+..+++.|+.+   |+++..+|..|.|++++- .+.         .           -++.++..+. ..
T Consensus       379 TaLH~Aa~~g~~~av~~Li~~---Ga~I~~~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~~~~~i~~~pe~~e~vlD-~c  454 (929)
T KOG0510|consen  379 TALHLAAKYGNTSAVQKLISH---GADIGVKNKKGKSAFDTRPDRCLPVFVHRSPFNKCPTTELIEPLPECFEIVLD-FC  454 (929)
T ss_pred             hhhhHHHHhccHHHHHHHHHc---CCceeeccccccccccccccccccHHHhhCCCCCcchhhhhccchHHHHHHHH-HH
Confidence            999999999999999999999   999999999999999841 111         1           1233433333 44


Q ss_pred             hhhhhhcCCCCchhhHHhh
Q 014436          375 ANYQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       375 ~~~~~~~~~g~t~l~~a~~  393 (424)
                      .......+.+.||+++-..
T Consensus       455 ~l~~~e~~~~~~~~Q~~~~  473 (929)
T KOG0510|consen  455 ILKSQERKDSPTPLQDEAA  473 (929)
T ss_pred             HHHHhhccCCCChhhhhhh
Confidence            4455566777888886543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=334.44  Aligned_cols=293  Identities=20%  Similarity=0.214  Sum_probs=257.6

Q ss_pred             HHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHh---hhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           30 LKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDA---ENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        30 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ..|+..+++++|++|++.|.+.+..+..|.||||+|  +..+   +.+++++|++.    +.+++.++..|.||||+|+.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a--~~~~~~~~~~iv~~Ll~~----Gadin~~~~~g~TpLh~A~~   92 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLY--LHYSSEKVKDIVRLLLEA----GADVNAPERCGFTPLHLYLY   92 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHH--HHhcCCChHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            567888999999999999999888888999999999  9888   89999999886    88899999999999999999


Q ss_pred             cC-cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHH--hCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436          107 FG-HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM--FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA  183 (424)
Q Consensus       107 ~g-~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  183 (424)
                      .| +.+++++|+++|++           ++.++..|.||||+|+  ..++.+++++|++.|++++ ..+..|.||||+|+
T Consensus        93 ~~~~~~iv~lLl~~ga~-----------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~  160 (471)
T PHA03095         93 NATTLDVIKLLIKAGAD-----------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLL  160 (471)
T ss_pred             cCCcHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHH
Confidence            99 59999999999998           6788899999999999  5568899999999999976 78889999999998


Q ss_pred             hcC--ChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChh-
Q 014436          184 ESE--SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW-  260 (424)
Q Consensus       184 ~~~--~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~-  260 (424)
                      ..+  +.+++++|++.|++++..+..|.||||+++...  .+..++++.|+..+.. ++.+|..|.||||+|+..+... 
T Consensus       161 ~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~--~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~  237 (471)
T PHA03095        161 KSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF--KPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKR  237 (471)
T ss_pred             HcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC--CCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchH
Confidence            866  678999999999999988999999999998642  2678899999998877 5889999999999999998753 


Q ss_pred             -HHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcc
Q 014436          261 -INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFA  339 (424)
Q Consensus       261 -~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  339 (424)
                       ++..+...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+.+++.++++.|++.   
T Consensus       238 ~~v~~ll~~g~din~~d~-~g~TpLh~A~~~~~~~~v~~LL~~gad~-n~~~~~g~tpl~~A~~~~~~~~v~~LL~~---  312 (471)
T PHA03095        238 SLVLPLLIAGISINARNR-YGQTPLHYAAVFNNPRACRRLIALGADI-NAVSSDGNTPLSLMVRNNNGRAVRAALAK---  312 (471)
T ss_pred             HHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCCHHHHHHHHHh---
Confidence             56666667777677764 8999999999999999999999999997 88999999999999999999999999987   


Q ss_pred             ccccccccC
Q 014436          340 RILINEGDA  348 (424)
Q Consensus       340 ~~~i~~~d~  348 (424)
                      +.+++..+.
T Consensus       313 ~~~~~~~~~  321 (471)
T PHA03095        313 NPSAETVAA  321 (471)
T ss_pred             CCCHHHHHH
Confidence            556655443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=329.40  Aligned_cols=272  Identities=25%  Similarity=0.309  Sum_probs=182.0

Q ss_pred             hhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHH-----HHhCCCHHHHHHHhh
Q 014436           88 ALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD-----AMFPGNMEVVKILTR  162 (424)
Q Consensus        88 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~-----A~~~~~~~~v~~Ll~  162 (424)
                      ...+..+..+.||||.|+..|+.++|++|+++|++           ++..+..+.||||+     |+..++.+++++|++
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-----------~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~   94 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-----------INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE   94 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-----------CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH
Confidence            33344445555555555555555555555555554           33344455555555     555555555555555


Q ss_pred             cCCCCCCCCCCCCCcHHHHHH--hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCC--cHHHHHHHHhhcCCc
Q 014436          163 EDPDYPYSANDYGKTPLYMAA--ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG--DHHAMRQLFGRKKSL  238 (424)
Q Consensus       163 ~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~--~~~~~~~Ll~~~~~~  238 (424)
                      .|++++ ..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..    +  +.+++++|++.++. 
T Consensus        95 ~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~iv~~Ll~~g~d-  168 (480)
T PHA03100         95 YGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES----NKIDLKILKLLIDKGVD-  168 (480)
T ss_pred             CCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc----CCChHHHHHHHHHCCCC-
Confidence            555542 44455555555555  55555555555555555555555555555555554    4  55555555555544 


Q ss_pred             ccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCC------chHHHHHHhcCC--HHHHHHHHhhCCCccccc
Q 014436          239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK------MTALHLAAGRGH--ARTVETILSLAPECFELV  310 (424)
Q Consensus       239 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~v~~Ll~~~~~~~~~~  310 (424)
                      ++..+..|.||||+|+..|+.+++++|...+...+..+. .|      .||||.|+..++  .+++++|++.|.++ +.+
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~  246 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIK  246 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCC
Confidence            344445555555555555555555555544444333332 33      799999999999  99999999999996 889


Q ss_pred             cCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436          311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       311 ~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~  382 (424)
                      |..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.+++++|++ +|++++..+.
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~~Ll~~---gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~-~g~~i~~i~~  314 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN-NGPSIKTIIE  314 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh-cCCCHHHHHH
Confidence            99999999999999999999999998   88999999999999999999999999999998 7999887653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-42  Score=325.55  Aligned_cols=296  Identities=19%  Similarity=0.172  Sum_probs=263.0

Q ss_pred             hhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC---cHHHHHHHHHhchhcccchHHHHHHHHHhcC
Q 014436           63 HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFG---HSDIVRVLIDRAKLAQDGDEAARQMIRMVNN  139 (424)
Q Consensus        63 ~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~  139 (424)
                      ..+  +..++.+++++|++.    +..++..+..|.||||+|+..+   +.+++++|+++|++           ++.++.
T Consensus        19 ~~~--~~~~~~~~v~~Ll~~----ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-----------in~~~~   81 (471)
T PHA03095         19 LLN--ASNVTVEEVRRLLAA----GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-----------VNAPER   81 (471)
T ss_pred             HHc--CCCCCHHHHHHHHHc----CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-----------CCCCCC
Confidence            445  778888999999886    8889999999999999999998   99999999999999           678888


Q ss_pred             CCCcHHHHHHhCC-CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH--hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          140 KKNTALHDAMFPG-NMEVVKILTREDPDYPYSANDYGKTPLYMAA--ESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       140 ~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .|.||||+|+..| ..+++++|++.|++++ ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.||||+++
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~  160 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL  160 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            9999999999999 5999999999999976 78888999999999  556889999999999999999999999999998


Q ss_pred             HccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc--CChhHHHHHhhccccccccccCCCchHHHHHHhcCCH-
Q 014436          217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH--GKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHA-  293 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~-  293 (424)
                      ...  ....++++.|++.++.. ...+..|.||||+++..  +...+++.|...+...+..+. .|.||||+|+..++. 
T Consensus       161 ~~~--~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~-~g~tpLh~Aa~~~~~~  236 (471)
T PHA03095        161 KSR--NANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM-LGNTPLHSMATGSSCK  236 (471)
T ss_pred             HcC--CCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCch
Confidence            862  24789999999998875 55599999999999876  455588888888888777766 899999999999864 


Q ss_pred             -HHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccc
Q 014436          294 -RTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRT  372 (424)
Q Consensus       294 -~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~  372 (424)
                       .+++.+++.|.++ +.+|..|+||||+|+..|+.+++++|++.   |++++.+|..|+||||+|+..++.++++.||. 
T Consensus       237 ~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~-  311 (471)
T PHA03095        237 RSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNNGRAVRAALA-  311 (471)
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH-
Confidence             6888999999996 88999999999999999999999999998   99999999999999999999999999999998 


Q ss_pred             cchhhhhhcCCCC
Q 014436          373 THANYQAVNDQNV  385 (424)
Q Consensus       373 ~g~~~~~~~~~g~  385 (424)
                      .+++++.......
T Consensus       312 ~~~~~~~~~~~~~  324 (471)
T PHA03095        312 KNPSAETVAATLN  324 (471)
T ss_pred             hCCCHHHHHHHHH
Confidence            7888766554333

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-41  Score=314.76  Aligned_cols=341  Identities=16%  Similarity=0.106  Sum_probs=263.5

Q ss_pred             chhHHHHHHHHHHh-hccccCCcchhhhhhhHHh---hhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC--cHHH
Q 014436           39 EPFKDMAREVIESL-LTLQTRNTILHINIMCQDA---ENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFG--HSDI  112 (424)
Q Consensus        39 ~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~  112 (424)
                      ..++..++.-.+.+ ..|..|.||||+|  +.++   +.+++++|++.    |++++.+|..|.||||+|+..+  +.|+
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A--~~~~~~~~~eivklLLs~----GAdin~kD~~G~TPLh~Aa~~~~~~~eI   94 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCY--VSNKCDTDIKIVRLLLSR----GVERLCRNNEGLTPLGVYSKRKYVKSQI   94 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHH--HHcCCcCcHHHHHHHHhC----CCCCcccCCCCCChHHHHHHcCCCcHHH
Confidence            45666666554444 7778999999999  8886   58999999986    9999999999999999999977  7999


Q ss_pred             HHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHh--CCCHHHHHHHhh-cCCCCCCCCC----CCCCcHHHHHHhc
Q 014436          113 VRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF--PGNMEVVKILTR-EDPDYPYSAN----DYGKTPLYMAAES  185 (424)
Q Consensus       113 v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~-~~~~~~~~~~----~~g~t~L~~A~~~  185 (424)
                      |++|++.|+..+         .+..+..+.+|||.++.  +++.+++++|++ .+.++....+    ..|.+|++++...
T Consensus        95 v~~Ll~~~~~~~---------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~  165 (672)
T PHA02730         95 VHLLISSYSNAS---------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPN  165 (672)
T ss_pred             HHHHHhcCCCCC---------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCC
Confidence            999999987643         44566678899999888  899999999997 5555443322    3789999999999


Q ss_pred             CChHHHHHHHHhCCCCC-------CCCCCC-CcHHHHHHHc--cccCCcHHHHHHHHhhcCCcccccCCCCChHHHH--H
Q 014436          186 ESSDMVLTLLENCTSLS-------HEGPNG-KTALHAAVMY--FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY--A  253 (424)
Q Consensus       186 ~~~~~v~~Ll~~~~~~~-------~~~~~~-~t~L~~a~~~--~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~--a  253 (424)
                      ++.++|++|+++|++++       ..+..+ .|.||+++..  .+.+...++++.|+++|++ ++.+|..|.||||+  +
T Consensus       166 ~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~  244 (672)
T PHA02730        166 PRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWS  244 (672)
T ss_pred             CchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            99999999999999984       123333 3556644432  1344789999999999987 69999999999995  4


Q ss_pred             HhcCChhHHHHHhh--------------------------------ccccccc-------------------cccCCCch
Q 014436          254 AYHGKYWINDLLEI--------------------------------DQTATNI-------------------ADKDRKMT  282 (424)
Q Consensus       254 ~~~~~~~~~~~l~~--------------------------------~~~~~~~-------------------~~~~~~~t  282 (424)
                      ...++.+++++|..                                .+.+...                   .-...|.+
T Consensus       245 ~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n  324 (672)
T PHA02730        245 CSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYN  324 (672)
T ss_pred             cCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccc
Confidence            44566788888877                                2222211                   01113322


Q ss_pred             ---------------------HHHHHHhcC---CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC----ccchHHhh
Q 014436          283 ---------------------ALHLAAGRG---HARTVETILSLAPECFELVDNRRWNFLHYAVASFQ----LQDLKPLL  334 (424)
Q Consensus       283 ---------------------~l~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~ll  334 (424)
                                           .||.-...+   +.+++++|+++|+++ +.. ..|.||||+|+..+.    .+++++|+
T Consensus       325 ~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLI  402 (672)
T PHA02730        325 HYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIV  402 (672)
T ss_pred             hhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHH
Confidence                                 566555544   689999999999998 544 789999999988775    79999999


Q ss_pred             hCCcccc--ccccccCCCCcHHHH---HHhcC---------CcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhH
Q 014436          335 RNPFARI--LINEGDAKGNTPLHV---FAAVR---------PSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV  400 (424)
Q Consensus       335 ~~~~~~~--~i~~~d~~g~t~L~~---A~~~~---------~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  400 (424)
                      ++   |+  +++.+|..|+||||.   |...+         ..+++++|+. +|++++.+|..|+||||+|+.. .+...
T Consensus       403 s~---Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~-~~~ei  477 (672)
T PHA02730        403 EN---NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDV-NNIQF  477 (672)
T ss_pred             Hc---CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHh-CCHHH
Confidence            98   65  799999999999994   33222         1245788887 8999999999999999999864 55566


Q ss_pred             HH
Q 014436          401 IN  402 (424)
Q Consensus       401 ~~  402 (424)
                      ++
T Consensus       478 ve  479 (672)
T PHA02730        478 AR  479 (672)
T ss_pred             HH
Confidence            65

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.1e-43  Score=337.91  Aligned_cols=363  Identities=26%  Similarity=0.297  Sum_probs=312.7

Q ss_pred             ccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHH
Q 014436           22 QSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPL  101 (424)
Q Consensus        22 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (424)
                      ...+-++||.|+..|+++++++++..|...+..+-+|.||+|.|  +..+..++.+++++.    +..+...+....||+
T Consensus       239 d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~A--A~~~~~e~~~~ll~~----ga~~~~~~~~~kt~l  312 (1143)
T KOG4177|consen  239 DESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMA--ARAGQVEVCKLLLQN----GADVLAKARDDQTPL  312 (1143)
T ss_pred             cccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhh--hccchhhhHhhhhcc----CcccccccccccChh
Confidence            34555679999999999999999999999999999999999999  999999999999986    666777777777888


Q ss_pred             HHHHHcCcHHHHHHHHHhchhcccchHHH---------------HH-------HHHHhcCCCCcHHHHHHhCCCHHHHHH
Q 014436          102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAA---------------RQ-------MIRMVNNKKNTALHDAMFPGNMEVVKI  159 (424)
Q Consensus       102 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~---------------~~-------~i~~~~~~g~t~L~~A~~~~~~~~v~~  159 (424)
                      |.|...|..++++.+++.++..+......               ..       .-...+..|.||+|.|+..|..++++.
T Consensus       313 ~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~L  392 (1143)
T KOG4177|consen  313 HIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVEL  392 (1143)
T ss_pred             hhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHh
Confidence            88888887788888887776654111000               00       012345678899999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCC-cHHHHHHHHhhcCCc
Q 014436          160 LTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG-DHHAMRQLFGRKKSL  238 (424)
Q Consensus       160 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~-~~~~~~~Ll~~~~~~  238 (424)
                      ++.+|.+.+ ..+..|.||||.|+..++..+|+.++++|++++..+..|.|++|.|+..    + ..+....+++.+.. 
T Consensus       393 ll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~----g~~~~~~~~l~~~g~~-  466 (1143)
T KOG4177|consen  393 LLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK----GRYLQIARLLLQYGAD-  466 (1143)
T ss_pred             hhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc----ccHhhhhhhHhhcCCC-
Confidence            999999844 8888999999999999999999999999999999999999999999998    7 66666677766665 


Q ss_pred             ccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHH
Q 014436          239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFL  318 (424)
Q Consensus       239 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  318 (424)
                      ++.....|.||||.|+..|+.+++.++.+.....+...+ .+.+++|.+...+....++.+++.|..+ +.++..|.|||
T Consensus       467 ~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~-~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpL  544 (1143)
T KOG4177|consen  467 PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAK-KGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPL  544 (1143)
T ss_pred             cchhccccCcchhhhhccCCchHHHHhhhcCCccCccch-hccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchH
Confidence            688899999999999999999999999888766555554 8899999999999999999999999997 88999999999


Q ss_pred             HHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchh
Q 014436          319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPEL  398 (424)
Q Consensus       319 ~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~  398 (424)
                      |.|+..|+..+|++|+++   |++++.+++.|+||||.|+..|..+++..|++ +|+++|..|.+|.|||++|+. .+++
T Consensus       545 h~A~~~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~TpL~iA~~-lg~~  619 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTPLHIAVR-LGYL  619 (1143)
T ss_pred             HHHHhcCCchHHHHhhhC---CccccccCCCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcchhHHHHH-hccc
Confidence            999999999999999999   99999999999999999999999999988887 899999999999999999985 5777


Q ss_pred             hHHHH
Q 014436          399 LVINL  403 (424)
Q Consensus       399 ~~~~~  403 (424)
                      .+.+.
T Consensus       620 ~~~k~  624 (1143)
T KOG4177|consen  620 SVVKL  624 (1143)
T ss_pred             chhhH
Confidence            77763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.7e-42  Score=323.03  Aligned_cols=361  Identities=16%  Similarity=0.092  Sum_probs=275.0

Q ss_pred             eccccCCCCccc-cc-----ccCCCHHHHHHHH--cCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhh--ccHH
Q 014436            8 EFEEAPSLGSKA-AN-----QSQTDPKLLKAAA--DGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAEN--ASTK   77 (424)
Q Consensus         8 ~~~~~~~~~~~~-~~-----~~~~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~--~~~~   77 (424)
                      +.+..+.|...+ .+     ...+.||||.|+.  .++.+++++|++.|++.+..+..|.||||+|  ++.|+.  ++++
T Consensus       154 ~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~A--a~~g~~~~eIVk  231 (764)
T PHA02716        154 DLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTY--LITGNVCASVIK  231 (764)
T ss_pred             CHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCHHHHH
Confidence            334444455554 22     3467899998865  4678999999999999889999999999999  999854  8899


Q ss_pred             HHHHHHHhCchhhhhhccCCCcHHHHHH---HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHH---HHHhC
Q 014436           78 FVEEILEICPALLIQVNAKGDTPLHVAA---KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALH---DAMFP  151 (424)
Q Consensus        78 ~l~~~~~~~~~~~~~~~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~---~A~~~  151 (424)
                      +|++.    +++++.+|..|.||||.|+   .+++.++++.|++.+.....             ....++++   .|+..
T Consensus       232 lLLe~----GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~-------------~~~~~~L~~~i~AA~~  294 (764)
T PHA02716        232 KIIEL----GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV-------------KNIPMILHSYITLARN  294 (764)
T ss_pred             HHHHc----CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc-------------ccchhhhHHHHHHHHc
Confidence            99986    8899999999999999986   46789999999987543110             01112333   47889


Q ss_pred             CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh--cCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc----------
Q 014436          152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAE--SESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF----------  219 (424)
Q Consensus       152 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~----------  219 (424)
                      |+.+++++|++.|++++ .++..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+...          
T Consensus       295 g~leiVklLLe~GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~  373 (764)
T PHA02716        295 IDISVVYSFLQPGVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPET  373 (764)
T ss_pred             CCHHHHHHHHhCCCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccc
Confidence            99999999999999976 788999999999875  46789999999999999999999999999986420          


Q ss_pred             ccCCcHHHHHHHHhhcCCcccccCCCCChHHHH----HHhcCChhHHHHHhhcccccc----------ccccCCCchHHH
Q 014436          220 DFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY----AAYHGKYWINDLLEIDQTATN----------IADKDRKMTALH  285 (424)
Q Consensus       220 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~----a~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~t~l~  285 (424)
                      ...++.++++.|++.+++ ++.++..|.||||.    |...+..+++++|...+....          ......+ .++|
T Consensus       374 ~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~-~~lh  451 (764)
T PHA02716        374 DNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTP-CIIH  451 (764)
T ss_pred             cccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcch-hhHH
Confidence            112688999999999877 68999999999992    444567778888876543211          1111122 2244


Q ss_pred             HHHhcCC------------------HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch-----HHhhhCCccccc
Q 014436          286 LAAGRGH------------------ARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL-----KPLLRNPFARIL  342 (424)
Q Consensus       286 ~a~~~~~------------------~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~-----~~ll~~~~~~~~  342 (424)
                      .++..++                  .+++..++..+.++ +..|..|+||||+|+..++.+++     ++|++.   |++
T Consensus       452 h~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nv-N~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GAD  527 (764)
T PHA02716        452 HIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNN-AVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYN  527 (764)
T ss_pred             HHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccc-cccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCC
Confidence            4443322                  23344444455554 77899999999999999887554     999998   999


Q ss_pred             cccccCCCCcHHHHHHhcCCc-----chhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436          343 INEGDAKGNTPLHVFAAVRPS-----EFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       343 i~~~d~~g~t~L~~A~~~~~~-----~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      +|.+|..|+||||+|++.|+.     ++++.||+ +|++++...      +++|. .+.+...+.
T Consensus       528 IN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~-~ga~~~~~~------l~~~~-~~~~~~~~~  584 (764)
T PHA02716        528 INIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD-KRPNVDIVI------IFLDK-CYANGKFPS  584 (764)
T ss_pred             CcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh-cCCCcchHH------HHHHh-hhhhhHHHH
Confidence            999999999999999999977     99999988 899988873      66664 234444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-41  Score=315.35  Aligned_cols=348  Identities=18%  Similarity=0.112  Sum_probs=286.1

Q ss_pred             HHHHHHcCCCchhHHHHHHH-HHH---hhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 014436           29 LLKAAADGNAEPFKDMAREV-IES---LLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVA  104 (424)
Q Consensus        29 l~~A~~~g~~~~v~~ll~~~-~~~---~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  104 (424)
                      |+.+.+..+.+-+...++.- ...   ......+.||||+|  ++.|+.+++++|++.    +..++.+|..|.||||+|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A--~~~g~~e~vk~Ll~~----gadvn~~d~~g~TpLh~A   77 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQA--VEARNLDVVKSLLTR----GHNVNQPDHRDLTPLHII   77 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHH
Confidence            78889999876666666641 111   12334688999999  999999999999986    788899999999999999


Q ss_pred             HHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh
Q 014436          105 AKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE  184 (424)
Q Consensus       105 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  184 (424)
                      |..|+.++++.|++.+....             ...+.+|++.|+..++.+++++|+..+.+.....+   ...+..+..
T Consensus        78 ~~~g~~~~v~~Ll~~~~~~~-------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~  141 (477)
T PHA02878         78 CKEPNKLGMKEMIRSINKCS-------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSK  141 (477)
T ss_pred             HHCccHhHHHHHHHHHhccc-------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccc
Confidence            99999999999999876521             14678999999999999999999987654221111   111111111


Q ss_pred             cC--ChHHHHHHHHhCCCCCCCCCC-CCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhH
Q 014436          185 SE--SSDMVLTLLENCTSLSHEGPN-GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI  261 (424)
Q Consensus       185 ~~--~~~~v~~Ll~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  261 (424)
                      .+  ..+++++|+++|++++..+.. |.||||+|+..    ++.++++.|+..++. ++..+..|.||||.|+..++.++
T Consensus       142 ~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~----~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~i  216 (477)
T PHA02878        142 DDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN----KDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPI  216 (477)
T ss_pred             hhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC----CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHH
Confidence            22  345999999999999999998 99999999999    999999999999877 58899999999999999999999


Q ss_pred             HHHHhhccccccccccCCCchHHHHHHhc-CCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCccchHHhhhCCcc
Q 014436          262 NDLLEIDQTATNIADKDRKMTALHLAAGR-GHARTVETILSLAPECFELVD-NRRWNFLHYAVASFQLQDLKPLLRNPFA  339 (424)
Q Consensus       262 ~~~l~~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~  339 (424)
                      +++|...+...+..+. .|.||||+|+.. ++.+++++|++.|+++ +.++ ..|.||||+|  .++.+++++|++.   
T Consensus       217 v~~Ll~~ga~in~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~---  289 (477)
T PHA02878        217 VHILLENGASTDARDK-CGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEY---  289 (477)
T ss_pred             HHHHHHcCCCCCCCCC-CCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHC---
Confidence            9999988888777776 899999999976 7899999999999997 5555 4799999999  4678899999998   


Q ss_pred             ccccccccCCCCcHHHHHHhcC-Ccchhhhhccc----cchhhhhhcCCCCchhhHHhhcCchhhHHHHHHHhhhh
Q 014436          340 RILINEGDAKGNTPLHVFAAVR-PSEFNRYMSRT----THANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYK  410 (424)
Q Consensus       340 ~~~i~~~d~~g~t~L~~A~~~~-~~~~~~~LL~~----~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~  410 (424)
                      |++++..|..|+||||+|+..+ ..++++.|+..    .+.+.+.++..|.++-.-+...++.+..++..|-++..
T Consensus       290 gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~~~~~~~~~~~~c~~ei~  365 (477)
T PHA02878        290 GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCITSNKRLNQIKDKCEDELN  365 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999999999999999999754 45666666542    35678889999999888888888998888878877764

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-40  Score=311.67  Aligned_cols=306  Identities=18%  Similarity=0.146  Sum_probs=241.7

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV  103 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (424)
                      .+.+|||.||..|+.++|++|++.|++.+..+..|.||||+|  |..|+.+.+++|++......      ...+.+|++.
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~~~~~~------~~~~~~~l~~  107 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRSINKCS------VFYTLVAIKD  107 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHHHhccc------cccchhhHHH
Confidence            345789999999999999999999988888888999999999  99999999999988643221      1457789999


Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCC--CHHHHHHHhhcCCCCCCCCCCC-CCcHHH
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG--NMEVVKILTREDPDYPYSANDY-GKTPLY  180 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~  180 (424)
                      |+..++.+++++|+..+.......             ....+......+  ..+++++|+++|++++ ..+.. |.||||
T Consensus       108 a~~~~~~ei~~~Ll~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~~~~~~g~tpLh  173 (477)
T PHA02878        108 AFNNRNVEIFKIILTNRYKNIQTI-------------DLVYIDKKSKDDIIEAEITKLLLSYGADIN-MKDRHKGNTALH  173 (477)
T ss_pred             HHHcCCHHHHHHHHhCcccCcccC-------------cHHHHhhccchhhHHHHHHHHHHHcCCCCC-ccCCCCCCCHHH
Confidence            999999999999998764321100             001111111122  3459999999999977 55555 999999


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc-CCh
Q 014436          181 MAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH-GKY  259 (424)
Q Consensus       181 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~-~~~  259 (424)
                      +|+..|+.+++++|+++|++++..|..|.||||.|+..    ++.++++.|+..++. ++.+|..|.||||+|+.. ++.
T Consensus       174 ~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~----~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~  248 (477)
T PHA02878        174 YATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH----YNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDY  248 (477)
T ss_pred             HHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCH
Confidence            99999999999999999999999999999999999998    999999999988877 588899999999999975 677


Q ss_pred             hHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC-CccchHHhhhCCc
Q 014436          260 WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASF-QLQDLKPLLRNPF  338 (424)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~~~~ll~~~~  338 (424)
                      +++++|...+...+..+...|.||||.|  .++.+++++|++.|+++ +..+..|.||||+|+..+ ..++++.|+....
T Consensus       249 ~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~  325 (477)
T PHA02878        249 DILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLSSAVKQYLCINIGRILISNIC  325 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHHcCccchHHHHHHHHH
Confidence            8888888888887776655789999999  46788999999999997 889999999999998754 4667777776521


Q ss_pred             c--ccccccccCCCCcHHHHHHh
Q 014436          339 A--RILINEGDAKGNTPLHVFAA  359 (424)
Q Consensus       339 ~--~~~i~~~d~~g~t~L~~A~~  359 (424)
                      .  ..+.+.++..|.++-..++.
T Consensus       326 ~~~~~~~~~~~~~g~~~n~~~i~  348 (477)
T PHA02878        326 LLKRIKPDIKNSEGFIDNMDCIT  348 (477)
T ss_pred             HHHhccCcccCcHHHHHHHHHHh
Confidence            1  45666777777766544444

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=307.43  Aligned_cols=270  Identities=23%  Similarity=0.222  Sum_probs=247.2

Q ss_pred             cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHH-----HH
Q 014436          109 HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYM-----AA  183 (424)
Q Consensus       109 ~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-----A~  183 (424)
                      ..++++++++.+..           .+..+..+.||||.|+..++.+++++|++.|++++ ..+..|.||||+     |+
T Consensus        14 ~~~~~~~~~~~~~~-----------~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-~~~~~~~t~L~~~~~~~a~   81 (480)
T PHA03100         14 KVKNIKYIIMEDDL-----------NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-SSTKNNSTPLHYLSNIKYN   81 (480)
T ss_pred             HHHHHHHHHhcCcc-----------chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-CccccCcCHHHHHHHHHHH
Confidence            45778888877644           56678899999999999999999999999999976 677789999999     99


Q ss_pred             hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH--HccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcC--Ch
Q 014436          184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAV--MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG--KY  259 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~--~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~  259 (424)
                      ..++.+++++|+++|++++..+..|.||||+|+  ..    ++.+++++|++.+.. ++..+..|.||||+|+..+  +.
T Consensus        82 ~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~----~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  156 (480)
T PHA03100         82 LTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS----NSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDL  156 (480)
T ss_pred             hhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc----ChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChH
Confidence            999999999999999999999999999999999  87    999999999999877 5888999999999999999  88


Q ss_pred             hHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCC------CcHHHHHHHcCC--ccchH
Q 014436          260 WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR------WNFLHYAVASFQ--LQDLK  331 (424)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g------~t~l~~A~~~~~--~~~~~  331 (424)
                      +++++|...+...+..+. .|.||||.|+..|+.+++++|++.|+++ +..+..|      .||||.|+..++  .++++
T Consensus       157 ~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~  234 (480)
T PHA03100        157 KILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVN  234 (480)
T ss_pred             HHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHH
Confidence            899999888888777776 8999999999999999999999999997 6777888      899999999999  99999


Q ss_pred             HhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436          332 PLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       332 ~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      +|++.   |++++.+|..|+||||+|+..++.+++++|+. +|++++.+|..|+||+++|... ++...++
T Consensus       235 ~Ll~~---g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~-~~~~iv~  300 (480)
T PHA03100        235 YLLSY---GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILN-NNKEIFK  300 (480)
T ss_pred             HHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHh-CCHHHHH
Confidence            99998   89999999999999999999999999999998 8999999999999999999754 6666665

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-40  Score=313.10  Aligned_cols=328  Identities=16%  Similarity=0.131  Sum_probs=258.0

Q ss_pred             CCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhcc---CC----
Q 014436           25 TDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNA---KG----   97 (424)
Q Consensus        25 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~g----   97 (424)
                      ..++++.|+.+|+.|+|++|++.|++++..+..|.||||.|+.+.+|+.+++++|++.    ++.++..|.   .|    
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~  178 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYD  178 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc----CCCccccccccccccccc
Confidence            3466788999999999999999999999999999999996532567899999999997    666654443   23    


Q ss_pred             -------CcHHHHHHH-----------cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH--HHH
Q 014436           98 -------DTPLHVAAK-----------FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM--EVV  157 (424)
Q Consensus        98 -------~t~L~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~--~~v  157 (424)
                             .||||+|+.           .++.++|++|+++|++           ++.+|.+|.||||+|+.+|+.  +++
T Consensus       179 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-----------vn~~d~~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        179 DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-----------PSSIDKNYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-----------cccCCCCCCcHHHHHHHcCCCcHHHH
Confidence                   599999986           4689999999999999           788999999999999999985  799


Q ss_pred             HHHhhcCCCCC---CCCCCCCCcHHHHHHhc---------CChHHHHHHHHhCCCCCC-------CCC------------
Q 014436          158 KILTREDPDYP---YSANDYGKTPLYMAAES---------ESSDMVLTLLENCTSLSH-------EGP------------  206 (424)
Q Consensus       158 ~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~---------~~~~~v~~Ll~~~~~~~~-------~~~------------  206 (424)
                      ++|++ |.+..   ...+..|.+|+++|+.-         .+.++++.|++.|++...       .+.            
T Consensus       248 k~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (661)
T PHA02917        248 KLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTM  326 (661)
T ss_pred             HHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHh
Confidence            99985 77653   23566788999999841         177999999999986421       111            


Q ss_pred             CCCcHHHHHHHccccCC--cHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHH-HHHhhccccccccccCCCchH
Q 014436          207 NGKTALHAAVMYFDFKG--DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN-DLLEIDQTATNIADKDRKMTA  283 (424)
Q Consensus       207 ~~~t~L~~a~~~~~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~-~~l~~~~~~~~~~~~~~~~t~  283 (424)
                      .+.+++|.+..... .+  ..++++.|++.|++ ++.++..|.++.    .....++. .+|...+...+..+. .|.||
T Consensus       327 ~~~~~~~~l~~~~~-~g~~~~~~v~~Ll~~GAd-vn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~-~G~Tp  399 (661)
T PHA02917        327 NSDVLQHILIEYMT-FGDIDIPLVECMLEYGAV-VNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLD-DGEIP  399 (661)
T ss_pred             chHHHHHHHHHHHH-cCCCcHHHHHHHHHcCCC-CCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCC-CCCCh
Confidence            23334444332100 03  46699999999998 478888888754    23344544 444445555455555 69999


Q ss_pred             HHHHHhcC-----------------------CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccc
Q 014436          284 LHLAAGRG-----------------------HARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR  340 (424)
Q Consensus       284 l~~a~~~~-----------------------~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~  340 (424)
                      ||.|++.+                       ..+++++|+++|+++ +.+|..|+||||+|+..++.+++++|++.   |
T Consensus       400 L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdI-N~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~---G  475 (661)
T PHA02917        400 IGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDI-NMIDKRGETLLHKAVRYNKQSLVSLLLES---G  475 (661)
T ss_pred             hHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHC---c
Confidence            99987543                       356789999999997 88999999999999999999999999998   9


Q ss_pred             cccccccCCCCcHHHHHHh-cCCcchhhhhccccchhhhhh
Q 014436          341 ILINEGDAKGNTPLHVFAA-VRPSEFNRYMSRTTHANYQAV  380 (424)
Q Consensus       341 ~~i~~~d~~g~t~L~~A~~-~~~~~~~~~LL~~~g~~~~~~  380 (424)
                      ++++.+|..|+||||+|+. .++.++++.|+. +|++++..
T Consensus       476 Adin~~d~~G~T~L~~A~~~~~~~~iv~~LL~-~ga~i~~i  515 (661)
T PHA02917        476 SDVNIRSNNGYTCIAIAINESRNIELLKMLLC-HKPTLDCV  515 (661)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHH-cCCChhHH
Confidence            9999999999999999996 678999999988 89888743

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.1e-41  Score=324.98  Aligned_cols=368  Identities=24%  Similarity=0.266  Sum_probs=310.0

Q ss_pred             cccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC
Q 014436           19 AANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD   98 (424)
Q Consensus        19 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (424)
                      ......+.+|+|.||..+-++++..++..|.++...+..|.+|||.|  +..|+.+++.+++..    +..++..+..|.
T Consensus       203 ~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a--~~~g~~~i~~~l~~~----ga~~~~~~vr~~  276 (1143)
T KOG4177|consen  203 NASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVA--AFMGHLDIVKLLLQH----GASVNVSTVRGE  276 (1143)
T ss_pred             cccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHH--HhccchhHHHHHHhc----ccccCccccccc
Confidence            34456778899999999999999999999999889999999999999  999999999999997    788888999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHH--------------H--------HHHHHhcCCCCcHHHHHHhCCCHHH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAA--------------R--------QMIRMVNNKKNTALHDAMFPGNMEV  156 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--------------~--------~~i~~~~~~g~t~L~~A~~~~~~~~  156 (424)
                      ||+|.|++.+..++.++|++.|++........              +        ...+..+..|.||+|.++..++.++
T Consensus       277 tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~  356 (1143)
T KOG4177|consen  277 TPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEV  356 (1143)
T ss_pred             CcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHH
Confidence            99999999999999999999998854111000              0        0023344556677777777777776


Q ss_pred             HHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       157 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      ..++...+++.. .....|.||+|.|+.+|..+.+++++..|++++...+.|.||||.+..+    ++..+++.++..++
T Consensus       357 ~~~l~~~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~----~~~~~v~l~l~~gA  431 (1143)
T KOG4177|consen  357 AGALLEHGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHY----GNPRVVKLLLKRGA  431 (1143)
T ss_pred             HHHhhccccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhc----cCcceEEEEeccCC
Confidence            666666666544 5566788888888888999999999999988999999999999999988    88889998888887


Q ss_pred             CcccccCCCCChHHHHHHhcC-ChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 014436          237 SLLKVTDQYGWTPIHYAAYHG-KYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRW  315 (424)
Q Consensus       237 ~~~~~~~~~~~t~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  315 (424)
                      . .+..+..|.||+|.|+..| ..+....+...+...+.... .|.||||.|...|+.++++.+++.++.. +.....|.
T Consensus       432 ~-~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l  508 (1143)
T KOG4177|consen  432 S-PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGL  508 (1143)
T ss_pred             C-hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhcc
Confidence            7 4888889999999999998 55566666666766666665 8999999999999999999999888664 67778899


Q ss_pred             cHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcC
Q 014436          316 NFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGY  395 (424)
Q Consensus       316 t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~  395 (424)
                      +++|.|.+.+....++.+++.   |++++.++..|+||||+|+.+|+..+|++||+ +|+|++.+++.|+||||.|+.. 
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~---ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~-  583 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEH---GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQ-  583 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhc---CCceehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHc-
Confidence            999999999999999999988   99999999999999999999999999999999 8999999999999999999854 


Q ss_pred             chhhHHHHHH
Q 014436          396 PELLVINLSI  405 (424)
Q Consensus       396 ~~~~~~~~~~  405 (424)
                      ++.+++.+.+
T Consensus       584 G~~~i~~LLl  593 (1143)
T KOG4177|consen  584 GHNDIAELLL  593 (1143)
T ss_pred             ChHHHHHHHH
Confidence            6777776443

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=299.40  Aligned_cols=291  Identities=17%  Similarity=0.173  Sum_probs=237.6

Q ss_pred             cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC--CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP--GNMEVVKILTREDPDYPYSANDYGKTPLYMAAE  184 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  184 (424)
                      ..+.++|++|+++|++           ++.. ..|.||||.++..  ++.+++++|+++|++++. .+ .+.||||.|+.
T Consensus        13 ~~~~~~v~~LL~~Gad-----------vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~-~~-~~~tpL~~a~~   78 (494)
T PHA02989         13 TVDKNALEFLLRTGFD-----------VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY-KG-YIETPLCAVLR   78 (494)
T ss_pred             cCcHHHHHHHHHcCCC-----------cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC-CC-CCCCcHHHHHh
Confidence            4678999999999998           5556 5788998765544  378999999999999873 34 57999999987


Q ss_pred             cC------ChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc--
Q 014436          185 SE------SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH--  256 (424)
Q Consensus       185 ~~------~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~--  256 (424)
                      ++      ..+++++|+++|++++.++..|.||||.|+..... ++.+++++|++.|++.-+..+..|.||||+|+..  
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~-~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~  157 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNI-NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFS  157 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhccc-CcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhcc
Confidence            54      46899999999999999999999999988764211 5789999999998873267889999999998765  


Q ss_pred             CChhHHHHHhhccccccccccCCCchHHHHHHhcC----CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcC------C
Q 014436          257 GKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG----HARTVETILSLAPECFELVDNRRWNFLHYAVASF------Q  326 (424)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~------~  326 (424)
                      ++.+++++|.+.+...+......|.||||.|++.+    +.+++++|++.|+++ +.++..|.|++|.++..+      .
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccc
Confidence            46778888888887766644458999999998664    899999999999997 778888999999877643      4


Q ss_pred             ccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHHH
Q 014436          327 LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSIL  406 (424)
Q Consensus       327 ~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  406 (424)
                      .+++++|+.    ++++|.+|..|+||||+|+..++.+++++||+ .|+|++.+|..|+||||+|... ++..+++ .++
T Consensus       237 ~~il~~l~~----~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~-~~~~iv~-~LL  309 (494)
T PHA02989        237 FKVLNFILK----YIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKH-GNIDMLN-RIL  309 (494)
T ss_pred             hHHHHHHHh----CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHc-CCHHHHH-HHH
Confidence            566676654    78999999999999999999999999999998 8999999999999999999864 7777776 455


Q ss_pred             hhhhhhhhhHhhhh
Q 014436          407 STYKSRFLFHYLFF  420 (424)
Q Consensus       407 ~~~~~~~~~~~~~~  420 (424)
                      +..+...++..+|.
T Consensus       310 ~~~p~~~~i~~~~~  323 (494)
T PHA02989        310 QLKPGKYLIKKTFE  323 (494)
T ss_pred             hcCCChHHHHHHHH
Confidence            55555555544443

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=305.17  Aligned_cols=287  Identities=14%  Similarity=0.082  Sum_probs=206.8

Q ss_pred             HcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC-----
Q 014436           34 ADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFG-----  108 (424)
Q Consensus        34 ~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-----  108 (424)
                      ...+.++|++|++.|++++.. ..|.|+||.++....++.+++++|++.    |++++.++ .+.||||.|+.++     
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~----GAdvn~~~-~~~tpL~~a~~~~~~~~~   85 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN----GADVNYKG-YIETPLCAVLRNREITSN   85 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc----CCCccCCC-CCCCcHHHHHhccCcchh
Confidence            357899999999999988766 478999887621223468999999986    78888765 5689999988754     


Q ss_pred             -cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC---CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh
Q 014436          109 -HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP---GNMEVVKILTREDPDYPYSANDYGKTPLYMAAE  184 (424)
Q Consensus       109 -~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  184 (424)
                       +.+++++|+++|++           ++.+|..|.||||.|+..   ++.+++++|+++|++++...+..|.||||+|+.
T Consensus        86 ~~~~iv~~Ll~~Gad-----------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         86 KIKKIVKLLLKFGAD-----------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             hHHHHHHHHHHCCCC-----------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence             46899999999998           678888999999988755   678999999999999844788889999999876


Q ss_pred             c--CChHHHHHHHHhCCCCCC-CCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhH
Q 014436          185 S--ESSDMVLTLLENCTSLSH-EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI  261 (424)
Q Consensus       185 ~--~~~~~v~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  261 (424)
                      .  ++.+++++|+++|++++. .+..|.||||.|+......++.+++++|++.|+. ++..+..+.|+++.++..+.   
T Consensus       155 ~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~---  230 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNK---  230 (494)
T ss_pred             hccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhch---
Confidence            4  578999999999999987 6788999999988764334688999999998877 57777788888887765431   


Q ss_pred             HHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcccc
Q 014436          262 NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARI  341 (424)
Q Consensus       262 ~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~  341 (424)
                                               +...+..+++++|+. ++++ +.+|..|+||||+|+..++.+++++|++.   |+
T Consensus       231 -------------------------~~~~~~~~il~~l~~-~adv-n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~---Ga  280 (494)
T PHA02989        231 -------------------------ILSKKEFKVLNFILK-YIKI-NKKDKKGFNPLLISAKVDNYEAFNYLLKL---GD  280 (494)
T ss_pred             -------------------------hhcccchHHHHHHHh-CCCC-CCCCCCCCCHHHHHHHhcCHHHHHHHHHc---CC
Confidence                                     001122334444333 3443 44555555555555555555555555554   55


Q ss_pred             ccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          342 LINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       342 ~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      +++.+|..|+||||+|++.++.++++.||+
T Consensus       281 din~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        281 DIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555555555555555555555555555554

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-38  Score=290.18  Aligned_cols=369  Identities=16%  Similarity=0.062  Sum_probs=264.6

Q ss_pred             CHHHHHHHHcCCCchh--HHHHHHHHHHhhccccCCcchhhhhhhHHhhhcc-HHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           26 DPKLLKAAADGNAEPF--KDMAREVIESLLTLQTRNTILHINIMCQDAENAS-TKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        26 ~~~l~~A~~~g~~~~v--~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      ++.|+..|+.=+++.+  +.|++.|++|.. .+.|.||||.-  ..+.+.-. ++.++..+.    ..+..+-+|.+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~n~~~~~~~~   76 (631)
T PHA02792          4 DKILYDSCKTFNIDACSAQSLIESGANPLY-EYDGETPLKAY--VTKKNNNIKNDVVILLLS----SVDYKNINDFDIFE   76 (631)
T ss_pred             hhHHHhHhhccchhHHHHHHHHHcCCCccc-ccCCCccHHHH--HhhhhhhHHHHHHHHHHh----CCCcCccCCccHHH
Confidence            3456677777666654  567888988866 56888999966  44444333 345555432    23456778888887


Q ss_pred             H-HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHh-CCCHHHHHHHhhcCCCCC------------
Q 014436          103 V-AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF-PGNMEVVKILTREDPDYP------------  168 (424)
Q Consensus       103 ~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~~~~~~------------  168 (424)
                      + |+.+|+.|+|++|+++|++           ++.++..|.||+|+|+. .++.|++++|+++|++..            
T Consensus        77 ~~~s~n~~lElvk~LI~~GAd-----------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         77 YLCSDNIDIELLKLLISKGLE-----------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             HHHHhcccHHHHHHHHHcCCC-----------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            7 5567889999999999998           66777788888888865 688999999999987521            


Q ss_pred             -----------------------CCCCCCCCcHHHHHHhcC-------ChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436          169 -----------------------YSANDYGKTPLYMAAESE-------SSDMVLTLLENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       169 -----------------------~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                                             ...+..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~  225 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK  225 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc
Confidence                                   023446899999999888       78999999999999999999999999999987


Q ss_pred             cccCCcHHHHHHHHhhcCCccc------------c------cC-------CCC---------------------------
Q 014436          219 FDFKGDHHAMRQLFGRKKSLLK------------V------TD-------QYG---------------------------  246 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~~~------------~------~~-------~~~---------------------------  246 (424)
                      ..  -..++++.|+...-+...            .      .|       -.|                           
T Consensus       226 ~~--i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  303 (631)
T PHA02792        226 CD--IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT  303 (631)
T ss_pred             cc--chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh
Confidence            21  166777777653221000            0      00       000                           


Q ss_pred             ---ChHHHHHHhcCC--hhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCC--CcHHH
Q 014436          247 ---WTPIHYAAYHGK--YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR--WNFLH  319 (424)
Q Consensus       247 ---~t~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g--~t~l~  319 (424)
                         +-.||.....+.  .++.+++...+....   ...+..+++.|+..++.+++++|+++|+++ +.+|..|  .||||
T Consensus       304 ~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh  379 (631)
T PHA02792        304 DSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLF  379 (631)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHH
Confidence               112333444442  236666666665532   123567789999999999999999999997 7777765  69999


Q ss_pred             HHHHcCCcc---chHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhh---
Q 014436          320 YAVASFQLQ---DLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKY---  393 (424)
Q Consensus       320 ~A~~~~~~~---~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~---  393 (424)
                      +|......+   +++.++++   |+++|.+|..|+||||+|+..++.+++++|+. +|++++.+|..|+||+++|..   
T Consensus       380 ~A~~n~~~~v~~IlklLIs~---GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~  455 (631)
T PHA02792        380 PTLSIHESDVLSILKLCKPY---IDDINKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAH  455 (631)
T ss_pred             HHHHhccHhHHHHHHHHHhc---CCccccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHh
Confidence            988776654   47777887   99999999999999999999999999999998 799999999999999999954   


Q ss_pred             c-Cchh----hHHHHHHHhhhhhhhhhHhhhhhh
Q 014436          394 G-YPEL----LVINLSILSTYKSRFLFHYLFFYA  422 (424)
Q Consensus       394 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  422 (424)
                      + .++.    ..+.-.+++..+....++.+|+|.
T Consensus       456 ~~~~~i~~~~~~il~lLLs~~p~i~~i~~T~~~~  489 (631)
T PHA02792        456 ACIPEIAELYIKILEIILSKLPTIECIKKTVDYL  489 (631)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence            1 1222    112225556666665666666654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-38  Score=268.62  Aligned_cols=234  Identities=19%  Similarity=0.202  Sum_probs=206.4

Q ss_pred             CcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCC
Q 014436          108 GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES  187 (424)
Q Consensus       108 g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  187 (424)
                      ++.+++++|+++|+.             ..|.+|.||||+|+..|+.+++++|++.|++++. .  +|.||||+|+..|+
T Consensus        10 ~~~~~~~~Lis~~a~-------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpLh~Aa~~g~   73 (284)
T PHA02791         10 KSKQLKSFLSSKDAF-------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLED   73 (284)
T ss_pred             CHHHHHHHHHhCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHHHHHHHCCC
Confidence            578999999999875             4688999999999999999999999999988653 3  47899999999999


Q ss_pred             hHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCC-hHHHHHHhcCChhHHHHHh
Q 014436          188 SDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGW-TPIHYAAYHGKYWINDLLE  266 (424)
Q Consensus       188 ~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~l~  266 (424)
                      .+++++|+++|++++.+|..|.||||+|+..    ++.++++.|+..++. ++..+..|+ ||||+|+..|+.+++++|.
T Consensus        74 ~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~----g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL  148 (284)
T PHA02791         74 TKIVKILLFSGMDDSQFDDKGNTALYYAVDS----GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFL  148 (284)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999    999999999999877 467777774 8999999999999888887


Q ss_pred             hccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcH-HHHHHHcCCccchHHhhhCCcccccccc
Q 014436          267 IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRNPFARILINE  345 (424)
Q Consensus       267 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~ll~~~~~~~~i~~  345 (424)
                      ..+...  .+...|.||||+|+..|+.+++++|+++|+++ +.++..|.|| ||+|+.+++.+++++|+++   |++++.
T Consensus       149 ~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~---Ga~in~  222 (284)
T PHA02791        149 SEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFKY---DINIYS  222 (284)
T ss_pred             hcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHC---CCCCcc
Confidence            764332  12225789999999999999999999999997 7788889977 9999999999999999998   999999


Q ss_pred             ccCCCCcHHHHHHhcCCcchhhhhccccchh
Q 014436          346 GDAKGNTPLHVFAAVRPSEFNRYMSRTTHAN  376 (424)
Q Consensus       346 ~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~  376 (424)
                      +|..| |+|      ++.|++++||++ .++
T Consensus       223 ~~~~~-~~l------~~~e~~~~ll~~-~~~  245 (284)
T PHA02791        223 VNLEN-VLL------DDAEIAKMIIEK-HVE  245 (284)
T ss_pred             CcccC-ccC------CCHHHHHHHHHh-hhh
Confidence            99855 555      899999999984 443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-37  Score=266.27  Aligned_cols=217  Identities=25%  Similarity=0.325  Sum_probs=163.6

Q ss_pred             HHHHHcCCCchhHHHHHHHH-----HHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhh-----hhhccCCCc
Q 014436           30 LKAAADGNAEPFKDMAREVI-----ESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALL-----IQVNAKGDT   99 (424)
Q Consensus        30 ~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~g~t   99 (424)
                      +.|++.|++..++.|+-+..     +......+|.|||-+|  +++|+.+++++|++.....+...     +...-.|-+
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~ia--aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIA--ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeee--hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCc
Confidence            36777777777777765321     1224455788888888  88888888888888643332222     223345667


Q ss_pred             HHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHH
Q 014436          100 PLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPL  179 (424)
Q Consensus       100 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  179 (424)
                      ||..|+..||+++||.|+++|++           +|.......|||-.||..|+++++++|+++|++.. ..|+.|.|.|
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~-----------VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcL  154 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGAS-----------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCL  154 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCc-----------cccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeE
Confidence            88888888888888888888877           55555666688888888888888888888888855 7788888888


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCCh
Q 014436          180 YMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY  259 (424)
Q Consensus       180 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  259 (424)
                      |+|+.+|+.+++++|++.|+|++.++..|.|+||.|+..    |+.++++.|+..+...  ..|..|.|||..|+..|+.
T Consensus       155 mIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEs----G~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAES----GSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             EeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhc----ccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcch
Confidence            888888888888888888888888888888888888887    8888888888877653  5567788888888888887


Q ss_pred             hHHHHHh
Q 014436          260 WINDLLE  266 (424)
Q Consensus       260 ~~~~~l~  266 (424)
                      +++.+|.
T Consensus       229 ~iVe~L~  235 (615)
T KOG0508|consen  229 DIVERLL  235 (615)
T ss_pred             HHHHHHh
Confidence            7666654

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-37  Score=282.56  Aligned_cols=241  Identities=21%  Similarity=0.217  Sum_probs=222.6

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD  220 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~  220 (424)
                      .+++||.|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++..+..+.||||.|+..  
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~--   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE--   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC--
Confidence            4689999999999999999999999976 6677899999999999999999999999999999989999999999999  


Q ss_pred             cCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436          221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL  300 (424)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  300 (424)
                        |+.++++.|+..+.......+..|.||||+|+..|+.+++++|...+...+..+. .|.||||.|+..|+.+++++|+
T Consensus        79 --g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-~g~tpLh~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         79 --GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT-DKFSPLHLAVMMGDIKGIELLI  155 (413)
T ss_pred             --CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH
Confidence              9999999999998776566677899999999999999999999988888776665 8999999999999999999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCC-cHHHHHHhcCCcchhhhhccccchhhhh
Q 014436          301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGN-TPLHVFAAVRPSEFNRYMSRTTHANYQA  379 (424)
Q Consensus       301 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~-t~L~~A~~~~~~~~~~~LL~~~g~~~~~  379 (424)
                      +.|+++ +.+|..|.||||+|+..|+.+++++|++.   |++++..+..|. ||+|+|+..++.+++++|+. +|++++.
T Consensus       156 ~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n~  230 (413)
T PHA02875        156 DHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCNI  230 (413)
T ss_pred             hcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcch
Confidence            999986 88999999999999999999999999998   999999998875 89999999999999999998 8999987


Q ss_pred             h---cCCCCchhhHHh
Q 014436          380 V---NDQNVSVGHIMK  392 (424)
Q Consensus       380 ~---~~~g~t~l~~a~  392 (424)
                      .   +..|.||++++.
T Consensus       231 ~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        231 MFMIEGEECTILDMIC  246 (413)
T ss_pred             HhhcCCCchHHHHHHH
Confidence            6   677999999874

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=290.39  Aligned_cols=293  Identities=17%  Similarity=0.126  Sum_probs=201.2

Q ss_pred             CCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc-----CcHH
Q 014436           37 NAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKF-----GHSD  111 (424)
Q Consensus        37 ~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~  111 (424)
                      +++.|+.|++.+. ++.. ..+.|+++.++....++.+++++|++.    |++++..|..|.||||.|+.+     ++.+
T Consensus        17 ~~~~v~~ll~~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINL----GANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHC----CCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            3568888886542 2222 356676665533555577888888775    777888888888888887754     5678


Q ss_pred             HHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCC---CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCC-
Q 014436          112 IVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG---NMEVVKILTREDPDYPYSANDYGKTPLYMAAESES-  187 (424)
Q Consensus       112 ~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-  187 (424)
                      ++++|+++|++           ++.+|..|.||||+|+.++   +.+++++|+++|++++ ..+..|.||||+|+..++ 
T Consensus        91 iv~~Ll~~Gad-----------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~  158 (489)
T PHA02798         91 IVKILIENGAD-----------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHH  158 (489)
T ss_pred             HHHHHHHCCCC-----------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCc
Confidence            88888888887           6677788888888888764   6788888888888865 677778888888888776 


Q ss_pred             --hHHHHHHHHhCCCCCCCC-CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHH
Q 014436          188 --SDMVLTLLENCTSLSHEG-PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL  264 (424)
Q Consensus       188 --~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  264 (424)
                        .+++++|++.|++++..+ ..|.||||.++......++.+++++|++.+.. ++..+..+.++++....         
T Consensus       159 ~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~---------  228 (489)
T PHA02798        159 IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLN---------  228 (489)
T ss_pred             chHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHH---------
Confidence              788888888888887664 46778888777653233577888888887765 35556666666542100         


Q ss_pred             HhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccc
Q 014436          265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILIN  344 (424)
Q Consensus       265 l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~  344 (424)
                                        .+..+...++.+++++|+. +.++ +.+|..|+||||+|+..++.+++++|++.   |++++
T Consensus       229 ------------------~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin  285 (489)
T PHA02798        229 ------------------SLLYDNKRFKKNILDFIFS-YIDI-NQVDELGFNPLYYSVSHNNRKIFEYLLQL---GGDIN  285 (489)
T ss_pred             ------------------HHHhhcccchHHHHHHHHh-cCCC-CCcCcCCccHHHHHHHcCcHHHHHHHHHc---CCccc
Confidence                              0112223344556666554 4554 66777777777777777777777777776   77777


Q ss_pred             cccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhc
Q 014436          345 EGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVN  381 (424)
Q Consensus       345 ~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~  381 (424)
                      .+|..|+||||+|++.++.++++.||+ ++++++..+
T Consensus       286 ~~d~~G~TpL~~A~~~~~~~iv~~lL~-~~~~~~~i~  321 (489)
T PHA02798        286 IITELGNTCLFTAFENESKFIFNSILN-KKPNKNTIS  321 (489)
T ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHc-cCCCHHHHH
Confidence            777777777777777777777776666 566665443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=260.88  Aligned_cols=224  Identities=18%  Similarity=0.121  Sum_probs=199.1

Q ss_pred             CCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHH
Q 014436          151 PGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ  230 (424)
Q Consensus       151 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  230 (424)
                      .++.+++++|+++++.   ..|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..    ++.++++.
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~----g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL----EDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC----CCHHHHHH
Confidence            4678999999999875   578899999999999999999999999999888764  78999999999    99999999


Q ss_pred             HHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccc
Q 014436          231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELV  310 (424)
Q Consensus       231 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~  310 (424)
                      |+..+.. ++.+|..|+||||+|+..|+.+++++|...+...+..+...+.||||+|+..|+.+++++|++.++...+  
T Consensus        80 LL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--  156 (284)
T PHA02791         80 LLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--  156 (284)
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--
Confidence            9998876 5889999999999999999999999998888776666653336999999999999999999998875422  


Q ss_pred             cCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcH-HHHHHhcCCcchhhhhccccchhhhhhcCCCCchhh
Q 014436          311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTP-LHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGH  389 (424)
Q Consensus       311 ~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~-L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~  389 (424)
                      ...|.||||+|++.|+.++++.|++.   |++++.+|..|.|| ||+|+..++.++++.||. +|++++.+|..| +|++
T Consensus       157 ~~~g~TpLh~Aa~~g~~eiv~lLL~~---gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~l~  231 (284)
T PHA02791        157 LAILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VLLD  231 (284)
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHC---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-ccCC
Confidence            13589999999999999999999998   99999999999987 999999999999999998 899999999955 7775


Q ss_pred             HH
Q 014436          390 IM  391 (424)
Q Consensus       390 ~a  391 (424)
                      .|
T Consensus       232 ~~  233 (284)
T PHA02791        232 DA  233 (284)
T ss_pred             CH
Confidence            54

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-36  Score=283.97  Aligned_cols=287  Identities=15%  Similarity=0.159  Sum_probs=235.1

Q ss_pred             cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHh--CCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhc-
Q 014436          109 HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF--PGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES-  185 (424)
Q Consensus       109 ~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-  185 (424)
                      ..++|+.|++.+..            +.. ..+.|+++.+..  .++.+++++|+++|++++ ..+..|.||||.|+.+ 
T Consensus        17 ~~~~v~~ll~~~~~------------~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpL~~~~~n~   82 (489)
T PHA02798         17 KLSTVKLLIKSCNP------------NEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-GLDNEYSTPLCTILSNI   82 (489)
T ss_pred             cHHHHHHHHhcCCh------------hhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-CCCCCCCChHHHHHHhH
Confidence            57899999987542            122 356677664443  357999999999999987 7888999999999864 


Q ss_pred             ----CChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC---
Q 014436          186 ----ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK---  258 (424)
Q Consensus       186 ----~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~---  258 (424)
                          +..+++++|+++|++++.+|..|.||||+|+..+.. ++.+++++|++.+++ ++..+..|.||||+|+..+.   
T Consensus        83 ~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~  160 (489)
T PHA02798         83 KDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHID  160 (489)
T ss_pred             HhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcch
Confidence                668999999999999999999999999999986111 378999999999887 58999999999999999987   


Q ss_pred             hhHHHHHhhccccccccccCCCchHHHHHHhc----CCHHHHHHHHhhCCCccccccCCCCcHHH-------HHHHcCCc
Q 014436          259 YWINDLLEIDQTATNIADKDRKMTALHLAAGR----GHARTVETILSLAPECFELVDNRRWNFLH-------YAVASFQL  327 (424)
Q Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-------~A~~~~~~  327 (424)
                      .+++++|...+...+..+...|.||||.++..    ++.+++++|+++|+++ +..+..|.++++       ++...+..
T Consensus       161 ~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~  239 (489)
T PHA02798        161 IEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKK  239 (489)
T ss_pred             HHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccCCccccchHHHHHHHHHhhcccchH
Confidence            77889988888877776665789999998764    4899999999999997 777888888876       23345567


Q ss_pred             cchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHHHh
Q 014436          328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILS  407 (424)
Q Consensus       328 ~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  407 (424)
                      +++.+|+.    ++++|.+|..|+||||+|+..++.+++++||+ +|+|++.+|..|+|||++|... ++...++ .+++
T Consensus       240 ~i~~~l~~----~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~-~~~~iv~-~lL~  312 (489)
T PHA02798        240 NILDFIFS----YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFEN-ESKFIFN-SILN  312 (489)
T ss_pred             HHHHHHHh----cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHc-CcHHHHH-HHHc
Confidence            77777765    78999999999999999999999999999998 8999999999999999999864 6666666 4455


Q ss_pred             hhhhhhhhHhhh
Q 014436          408 TYKSRFLFHYLF  419 (424)
Q Consensus       408 ~~~~~~~~~~~~  419 (424)
                      ..++...+...+
T Consensus       313 ~~~~~~~i~~~~  324 (489)
T PHA02798        313 KKPNKNTISYTY  324 (489)
T ss_pred             cCCCHHHHHHHH
Confidence            554444444433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-36  Score=277.54  Aligned_cols=240  Identities=20%  Similarity=0.234  Sum_probs=116.3

Q ss_pred             cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC
Q 014436           60 TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN  139 (424)
Q Consensus        60 t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~  139 (424)
                      ++||.|  ++.|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++           .+..+.
T Consensus         4 ~~L~~A--~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----------~~~~~~   66 (413)
T PHA02875          4 VALCDA--ILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-----------PDVKYP   66 (413)
T ss_pred             hHHHHH--HHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----------ccccCC
Confidence            444444  444444444444443    333344444444444444444444444444444443           222333


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF  219 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~  219 (424)
                      .+.||||.|+..|+.+++++|++.|+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. 
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~-  145 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM-  145 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-
Confidence            4444444444444444444444444443333334444455555444444555555544444444444444555554444 


Q ss_pred             ccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHH
Q 014436          220 DFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETI  299 (424)
Q Consensus       220 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~L  299 (424)
                         ++.+++++|++.++. ++.+|..|.||||+|+..|+.+++++|...+...+..+...+.+|+|+|+..++.+++++|
T Consensus       146 ---~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L  221 (413)
T PHA02875        146 ---GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF  221 (413)
T ss_pred             ---CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence               444444444444433 2444444444444444444444444444444444444432334666666666666666666


Q ss_pred             HhhCCCcccc---ccCCCCcHHHHHH
Q 014436          300 LSLAPECFEL---VDNRRWNFLHYAV  322 (424)
Q Consensus       300 l~~~~~~~~~---~~~~g~t~l~~A~  322 (424)
                      +++|+++ +.   .+..+.||++.++
T Consensus       222 l~~gad~-n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        222 IKRGADC-NIMFMIEGEECTILDMIC  246 (413)
T ss_pred             HHCCcCc-chHhhcCCCchHHHHHHH
Confidence            6666665 22   2445566666554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-37  Score=228.68  Aligned_cols=205  Identities=22%  Similarity=0.240  Sum_probs=176.0

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHh--hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESL--LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVA  104 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  104 (424)
                      ++.+.++...-..-++.+++..++..  ..|++|+||||||  |..|+.+++++|++.   .+-.++.+|..|+||||.|
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa--~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWA--CSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIA   79 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeee--eecCchhHHHHHHhc---CCCCCCCccccCCchhhhh
Confidence            45666777777778888888777544  6666899999999  999999999999873   3555677899999999999


Q ss_pred             HHcCcHHHHHHHHHh-chhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436          105 AKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA  183 (424)
Q Consensus       105 ~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  183 (424)
                      |..|+.++|+.|+.+ |++           ++..+..|+|+||||+..|..+++++|+++|+.+. .+|..|.||||-|+
T Consensus        80 ~s~g~~evVk~Ll~r~~ad-----------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGAD-----------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAA  147 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCC-----------cceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHH
Confidence            999999999999998 777           78889999999999999999999999999998866 88999999999999


Q ss_pred             hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHH
Q 014436          184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA  254 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  254 (424)
                      .-|..+++++|+..|+.++..|+.|+||||.|..-    ++.+....|+..+++ ....|+.| |++..++
T Consensus       148 avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e----~~~d~a~lLV~~gAd-~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE----GHPDVAVLLVRAGAD-TDREDKEG-TALRIAC  212 (226)
T ss_pred             hccchhhHHHHHhcCCCCCcccccCccHHHHHHhc----cCchHHHHHHHhccc-eeeccccC-chHHHHH
Confidence            99999999999999999999999999999999665    889999999988866 57888877 8877665

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-36  Score=224.60  Aligned_cols=208  Identities=23%  Similarity=0.257  Sum_probs=139.8

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCC-CCCCCCCCCCCcHHHHHHhcCChHHHHHHH-HhCCCCCCCCCCCCcHHHHHHHc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDP-DYPYSANDYGKTPLYMAAESESSDMVLTLL-ENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                      +.++.+.++......-++-+++..+ ..+...|.+|+|||||||..|+.+++.+|+ +.+..++.+|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4577788888877788888888776 666666668999999999999999999999 45678888888999999999988


Q ss_pred             cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHH
Q 014436          219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET  298 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~  298 (424)
                          |+.++++.|+.+...+++..+..|.|+||+|+                                  ..|+.+++++
T Consensus        83 ----g~~evVk~Ll~r~~advna~tn~G~T~LHyAa----------------------------------gK~r~eIaql  124 (226)
T KOG4412|consen   83 ----GNDEVVKELLNRSGADVNATTNGGQTCLHYAA----------------------------------GKGRLEIAQL  124 (226)
T ss_pred             ----CcHHHHHHHhcCCCCCcceecCCCcceehhhh----------------------------------cCChhhHHHH
Confidence                88889998888855555666555555555555                                  4455555555


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhh
Q 014436          299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQ  378 (424)
Q Consensus       299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~  378 (424)
                      |++.|+.+ +.+|..|.||||-|+.-|+++++++|+..   ++.+|..|..|+||||.|.--++.+....|++ +|++++
T Consensus       125 Lle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~---~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~-~gAd~~  199 (226)
T KOG4412|consen  125 LLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR-AGADTD  199 (226)
T ss_pred             HHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhc---CCCCCcccccCccHHHHHHhccCchHHHHHHH-hcccee
Confidence            55555443 55555555555555555555555555555   55555555555555555544455555544444 455555


Q ss_pred             hhcCCCCchhhHHh
Q 014436          379 AVNDQNVSVGHIMK  392 (424)
Q Consensus       379 ~~~~~g~t~l~~a~  392 (424)
                      ..|+.| ||+..|.
T Consensus       200 ~edke~-t~~~~a~  212 (226)
T KOG4412|consen  200 REDKEG-TALRIAC  212 (226)
T ss_pred             eccccC-chHHHHH
Confidence            555555 5555553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.9e-34  Score=242.44  Aligned_cols=191  Identities=22%  Similarity=0.244  Sum_probs=169.6

Q ss_pred             cccCCCHHHHHHHHcCCCchhHHHHHH-HHHHh--------hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhh
Q 014436           21 NQSQTDPKLLKAAADGNAEPFKDMARE-VIESL--------LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLI   91 (424)
Q Consensus        21 ~~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~--------~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (424)
                      ....+.+||..||++|+.++|++|++. ++++.        .....|-+||-.|  +..|+.++++.|++.    ++.+|
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA--saAGHl~vVk~L~~~----ga~VN  111 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA--SAAGHLEVVKLLLRR----GASVN  111 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH--hccCcHHHHHHHHHh----cCccc
Confidence            345667889999999999999999993 33221        3334688888888  999999999999997    78899


Q ss_pred             hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      .......|||--||..|++++||+|+++|++           ++..|..|.|.||.||..|+.+++++|++.|++++ .+
T Consensus       112 ~tT~TNStPLraACfDG~leivKyLvE~gad-----------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~k  179 (615)
T KOG0508|consen  112 DTTRTNSTPLRAACFDGHLEIVKYLVEHGAD-----------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AK  179 (615)
T ss_pred             cccccCCccHHHHHhcchhHHHHHHHHcCCC-----------CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hh
Confidence            8888899999999999999999999999999           77899999999999999999999999999999987 88


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR  234 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~  234 (424)
                      +..|.|+||.|++.|+.+++++|+.+|+.++. |..|-|||..|...    |..+++..|++.
T Consensus       180 s~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~t----G~~~iVe~L~~~  237 (615)
T KOG0508|consen  180 SYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVT----GHTDIVERLLQC  237 (615)
T ss_pred             cccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhh----cchHHHHHHhcC
Confidence            99999999999999999999999999988765 45599999999998    999999999853

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-33  Score=256.12  Aligned_cols=339  Identities=10%  Similarity=0.045  Sum_probs=259.7

Q ss_pred             CCCHHHHHHHHcCC-CchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           24 QTDPKLLKAAADGN-AEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        24 ~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      .+.|||+.=....+ ..-++.++.-+..+...+-+|.+++|+-+ +.+|+.+++++|++.    |++++.++..+.||+|
T Consensus        36 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-s~n~~lElvk~LI~~----GAdvN~~~n~~~~~l~  110 (631)
T PHA02792         36 DGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLC-SDNIDIELLKLLISK----GLEINSIKNGINIVEK  110 (631)
T ss_pred             CCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHH-HhcccHHHHHHHHHc----CCCcccccCCCCccee
Confidence            34477775544444 33455666677767777788999999742 788999999999996    8999999999999999


Q ss_pred             HHHH-cCcHHHHHHHHHhchhcc----cchH---------------------HHHHHHHHhcCCCCcHHHHHHhCC----
Q 014436          103 VAAK-FGHSDIVRVLIDRAKLAQ----DGDE---------------------AARQMIRMVNNKKNTALHDAMFPG----  152 (424)
Q Consensus       103 ~A~~-~g~~~~v~~Ll~~~~~~~----~~~~---------------------~~~~~i~~~~~~g~t~L~~A~~~~----  152 (424)
                      +|+. .++.|++++|+++|++..    .+..                     .....++..|..|.||||+|+.++    
T Consensus       111 ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~  190 (631)
T PHA02792        111 YATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDG  190 (631)
T ss_pred             EeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccc
Confidence            9966 699999999999998743    1111                     011246788889999999999999    


Q ss_pred             ---CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcC--ChHHHHHHHHhCCCCC-------------C------CCC--
Q 014436          153 ---NMEVVKILTREDPDYPYSANDYGKTPLYMAAESE--SSDMVLTLLENCTSLS-------------H------EGP--  206 (424)
Q Consensus       153 ---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~-------------~------~~~--  206 (424)
                         +.++++.|+++|+++. ..+..|.||||+|+.+.  ..++++.|++...+..             .      .|.  
T Consensus       191 ~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~i  269 (631)
T PHA02792        191 YATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYI  269 (631)
T ss_pred             ccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHH
Confidence               8999999999999977 67888999999999998  8899999987532110             0      000  


Q ss_pred             -----CCCcH------------------------------HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436          207 -----NGKTA------------------------------LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH  251 (424)
Q Consensus       207 -----~~~t~------------------------------L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  251 (424)
                           .|.+|                              ||.-...  .-.+.+++++|++.+....   ......+++
T Consensus       270 v~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~--~~v~ieiIK~LId~Ga~~~---r~~~~n~~~  344 (631)
T PHA02792        270 VDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSY--HTVYINVIKCMIDEGATLY---RFKHINKYF  344 (631)
T ss_pred             HHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhc--CCccHHHHHHHHHCCCccc---cCCcchHHH
Confidence                 11110                              1111111  1368889999999988742   223566789


Q ss_pred             HHHhcCChhHHHHHhhccccccccccC-CCchHHHHHHhcCCH---HHHHHHHhhCCCccccccCCCCcHHHHHHHcCCc
Q 014436          252 YAAYHGKYWINDLLEIDQTATNIADKD-RKMTALHLAAGRGHA---RTVETILSLAPECFELVDNRRWNFLHYAVASFQL  327 (424)
Q Consensus       252 ~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~~t~l~~a~~~~~~---~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  327 (424)
                      .|+..|+.+++++|...+...+..+.. .+.||||.|......   ++++++++.|+++ +.+|..|+||||+|+..++.
T Consensus       345 ~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        345 QKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSV  423 (631)
T ss_pred             HHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCH
Confidence            999999999999999988887766652 257999998776654   4688999999997 88999999999999999999


Q ss_pred             cchHHhhhCCccccccccccCCCCcHHHHHHh--cCC--------cchhhhhccccchhhh
Q 014436          328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAA--VRP--------SEFNRYMSRTTHANYQ  378 (424)
Q Consensus       328 ~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~--~~~--------~~~~~~LL~~~g~~~~  378 (424)
                      +++++|++.   |++++.+|..|+||||+|+.  .++        .++++.||+ +|.++.
T Consensus       424 eivelLLs~---GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs-~~p~i~  480 (631)
T PHA02792        424 SLVEWLIDN---GADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILS-KLPTIE  480 (631)
T ss_pred             HHHHHHHHC---CCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHh-cCCChh
Confidence            999999998   99999999999999999976  222        355666766 676654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=7.3e-33  Score=247.13  Aligned_cols=208  Identities=26%  Similarity=0.274  Sum_probs=193.3

Q ss_pred             CHHHHHHHHcCCCchhHHHHHH-HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhc-cCCCcHHHH
Q 014436           26 DPKLLKAAADGNAEPFKDMARE-VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVN-AKGDTPLHV  103 (424)
Q Consensus        26 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~  103 (424)
                      -..++.|+++|+++.|+.+++. |.+.+..|..|.|+||||  +-+++.+++++|++.    ++++|... .-+.||||+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWA--AiNNrl~v~r~li~~----gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWA--AINNRLDVARYLISH----GADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHH--HHcCcHHHHHHHHHc----CCCccccCCCCCCCcchH
Confidence            3458999999999999999998 887788888999999999  999999999999997    89999988 567899999


Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA  183 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  183 (424)
                      |+++|+..+|+.|+++|++           ++.+|.+|.+|||.|+..|+.-++-+|+.++++++ .+|.+|+||||+|+
T Consensus       119 Aar~G~~~vv~lLlqhGAd-----------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGAD-----------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAA  186 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCC-----------CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHH
Confidence            9999999999999999999           78999999999999999999999999999998876 88999999999999


Q ss_pred             hcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436          184 ESESSDMVLTLLENCTSLSHEG-PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  256 (424)
                      .+|....+..|+..++.+...| ..|.||||+|+..    |+..++. |+..++.+....|.+|.||+.+|...
T Consensus       187 ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~----gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  187 YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVG----GNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccHHHHHHHHhcccccccccccCCchHHHHHhc----CCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999888999999999999887 8999999999999    9999999 66677666789999999999999776

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=5.8e-32  Score=241.38  Aligned_cols=210  Identities=21%  Similarity=0.280  Sum_probs=188.1

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-chhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      .+.++.|++.|..+.|+.|++. |.+           ++..|.+|.|+||+|+.+++.+++++|+++|++++..-..-+.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~-----------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~s  113 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES-----------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGS  113 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC-----------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCC
Confidence            4668999999999999999999 776           6678889999999999999999999999999999966668899


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  256 (424)
                      ||||+|+++|+..+|.+|+++|+|++.+|.+|.+|+|.|++.    ++.-.+-+++..+.+ ++.+|..|+||||+|+.+
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~----~~~~~vayll~~~~d-~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF----GHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh----CchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999999    999999999999955 699999999999999999


Q ss_pred             CChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 014436          257 GKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS  324 (424)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  324 (424)
                      |+......|.+.+......++..|.||||.|+..|+..++..+++.|.+ .+.+|.+|.||+.+|.+.
T Consensus       189 g~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  189 GFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD-LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc-ccccccCCCCHHHHHHHh
Confidence            9877566666777776777767999999999999999999944444444 588899999999999776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=204.28  Aligned_cols=175  Identities=15%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcC--cHHHHHHHHHhchhcccchHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFG--HSDIVRVLIDRAKLAQDGDEAARQMI  134 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~i  134 (424)
                      .+.||||+|  +..|+.+.++.|++.       ++..|..|.||||+|+.++  +.+++++|+++|++           +
T Consensus        20 ~~~~pL~~A--~~~~~~~~vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-----------v   79 (209)
T PHA02859         20 RYCNPLFYY--VEKDDIEGVKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-----------V   79 (209)
T ss_pred             ccCcHHHHH--HHhCcHHHHHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-----------C
Confidence            445566666  666666666555542       2334555666666665533  55666666666655           3


Q ss_pred             HHhc-CCCCcHHHHHHhC---CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh--cCChHHHHHHHHhCCCCCCCCCCC
Q 014436          135 RMVN-NKKNTALHDAMFP---GNMEVVKILTREDPDYPYSANDYGKTPLYMAAE--SESSDMVLTLLENCTSLSHEGPNG  208 (424)
Q Consensus       135 ~~~~-~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~  208 (424)
                      +.++ ..|.||||+|+..   ++.+++++|+++|++++ ..+..|.||||+|+.  .++.+++++|++.|++++.+|..|
T Consensus        80 n~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g  158 (209)
T PHA02859         80 NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDN  158 (209)
T ss_pred             CccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCC
Confidence            3443 3556666655432   34566666666666654 455556666665554  235566666666666666666666


Q ss_pred             CcHHHHH-HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcC
Q 014436          209 KTALHAA-VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG  257 (424)
Q Consensus       209 ~t~L~~a-~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  257 (424)
                      .||||.+ +..    ++.+++++|++.+.. ++.++..|.||+++|..++
T Consensus       159 ~t~Lh~~a~~~----~~~~iv~~Ll~~Gad-i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        159 NNILYSYILFH----SDKKIFDFLTSLGID-INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CcHHHHHHHhc----CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhhh
Confidence            6666643 333    455666666655544 3555566666666665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.2e-28  Score=199.43  Aligned_cols=179  Identities=18%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCC--CHHHHHHHhhcCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG--NMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~  171 (424)
                      ...+.||||.|+..|+.++|+.|++.              ++..|..|.||||+|+..+  +.+++++|+++|++++...
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~--------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~   83 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF--------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT   83 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh--------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC
Confidence            33445555555555555555555543              2234455555555555432  4555555555555554222


Q ss_pred             CCCCCcHHHHHHhc---CChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436          172 NDYGKTPLYMAAES---ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT  248 (424)
Q Consensus       172 ~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  248 (424)
                      +..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||.|+...  .++.+++++|+..+.+ ++.+|..|.|
T Consensus        84 ~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~--~~~~~iv~~Li~~gad-in~~d~~g~t  160 (209)
T PHA02859         84 RDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNF--NVRINVIKLLIDSGVS-FLNKDFDNNN  160 (209)
T ss_pred             CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhc--cCCHHHHHHHHHcCCC-cccccCCCCc
Confidence            23455555555432   2455555555555555555555555555554320  1345555555555544 3455555555


Q ss_pred             HHHH-HHhcCChhHHHHHhhccccccccccCCCchHHHHHHhc
Q 014436          249 PIHY-AAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR  290 (424)
Q Consensus       249 ~l~~-a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~  290 (424)
                      |||. ++..++.+++++|...+...+..+. .|.|||++|+.+
T Consensus       161 ~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~-~g~tpl~la~~~  202 (209)
T PHA02859        161 ILYSYILFHSDKKIFDFLTSLGIDINETNK-SGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhh
Confidence            5553 2334444455555555544444443 555555555543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=9e-28  Score=213.51  Aligned_cols=214  Identities=9%  Similarity=-0.035  Sum_probs=166.1

Q ss_pred             HHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC-----CCCCCCCCcHHHHHHh--c
Q 014436          113 VRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP-----YSANDYGKTPLYMAAE--S  185 (424)
Q Consensus       113 v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~--~  185 (424)
                      .++++.+|.+           ++..+.+|     +|+..+..+++++|+.+|++++     ...+..++|+||.++.  .
T Consensus        65 ~~~~~~~~~~-----------i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~  128 (437)
T PHA02795         65 YDYFRIHRDN-----------IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY  128 (437)
T ss_pred             HHHHHHcCcc-----------hhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC
Confidence            4889999987           66666666     8888899999999999999865     1356679999999999  8


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHH
Q 014436          186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL  265 (424)
Q Consensus       186 ~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  265 (424)
                      |+.++|++|+++|++++..  ++.||+|.|+..    ++.+++++|++.++...+.    +.+|++.             
T Consensus       129 n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~----~~~eIVk~Lls~Ga~~~n~----~~~~l~~-------------  185 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK----KESSVVEFILNCGIPDEND----VKLDLYK-------------  185 (437)
T ss_pred             CCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc----CcHHHHHHHHhcCCccccc----ccchhhh-------------
Confidence            9999999999999999874  458999999998    9999999999998743221    1122211             


Q ss_pred             hhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccccc
Q 014436          266 EIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINE  345 (424)
Q Consensus       266 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~  345 (424)
                                  ..+.+++|.|...++.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.   |++++.
T Consensus       186 ------------~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~---GAdIN~  249 (437)
T PHA02795        186 ------------IIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLVSWLLEN---GANVNA  249 (437)
T ss_pred             ------------hhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC
Confidence                        13447777777777888888888888776 77788888888888888888888888877   778888


Q ss_pred             ccCCCCcHHHHHHhcCC--------cchhhhhccccchhhhhhcC
Q 014436          346 GDAKGNTPLHVFAAVRP--------SEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       346 ~d~~g~t~L~~A~~~~~--------~~~~~~LL~~~g~~~~~~~~  382 (424)
                      +|..|+||||+|+..|+        .++++.||+ +|++++....
T Consensus       250 ~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~  293 (437)
T PHA02795        250 VMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKL  293 (437)
T ss_pred             cCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhH
Confidence            88888888888887774        467776665 6777766543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-29  Score=235.15  Aligned_cols=325  Identities=18%  Similarity=0.177  Sum_probs=286.6

Q ss_pred             ccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHH
Q 014436           22 QSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPL  101 (424)
Q Consensus        22 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (424)
                      ....+++|..||+.|+.|+|..|+.+|.+...+|..|.+||.+|  +-.|+..+++.|++.   .-+.-.+.|..+.|+|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk~---ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLKA---HADVEAQSDRTKDTML  828 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHhh---hhhhhhhcccccCceE
Confidence            34567789999999999999999999999889999999999999  999999999999887   2333456789999999


Q ss_pred             HHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC-CCCCCcHHH
Q 014436          102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA-NDYGKTPLY  180 (424)
Q Consensus       102 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~  180 (424)
                      -+||..|+.++|+.||..|++.           ..++-...|||..|...|..+++..|+..|..++... .+.|..||+
T Consensus       829 Slacsggr~~vvelLl~~gank-----------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANK-----------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccc-----------cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh
Confidence            9999999999999999999883           3566677899999999999999999999998887554 346899999


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCC-CCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCCh
Q 014436          181 MAAESESSDMVLTLLENCTSLSHE-GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY  259 (424)
Q Consensus       181 ~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  259 (424)
                      +|..+|+.+.++.|++.|.|+|.. ..+.+|+|.+|+-.    ++.+++..|+...+. +..+-+.|.|||+-++..|..
T Consensus       898 latmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq----gr~evv~lLLa~~an-vehRaktgltplme~AsgGyv  972 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ----GRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYV  972 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhccccccccccceeecccc----CcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCcc
Confidence            999999999999999999988854 34678999999987    999999999998877 478888999999999999999


Q ss_pred             hHHHHHhhcccccccccc-CCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCc
Q 014436          260 WINDLLEIDQTATNIADK-DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPF  338 (424)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~  338 (424)
                      ++-.+|...+.+.+.... ....|.|.+++..|+..+|..|+...+.+ ..++.+|.|+|++|+..|.+..+..|++.  
T Consensus       973 dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwla~~Gg~lss~~il~~~-- 1049 (2131)
T KOG4369|consen  973 DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWLASAGGALSSCPILVSS-- 1049 (2131)
T ss_pred             ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccce-ecccCCCCcccchhccCCccccchHHhhc--
Confidence            998888888777655443 23458899999999999999999987775 88999999999999999999999999998  


Q ss_pred             cccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          339 ARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       339 ~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                       +++++..|+.-.|++.-|.+.|+.++|+|...
T Consensus      1050 -~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1050 -VADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             -ccChhhhhcccccccHHHHHhchhheeccccC
Confidence             99999999999999999999999999998764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=3.8e-28  Score=227.17  Aligned_cols=325  Identities=18%  Similarity=0.149  Sum_probs=286.5

Q ss_pred             ccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH
Q 014436           54 TLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM  133 (424)
Q Consensus        54 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  133 (424)
                      +..+..|+|..|  |+.|+.+.++.|+..    ++.+..+|..|.+||..|+..||..+|+.|+.+.+++          
T Consensus       753 Te~n~~t~LT~a--caggh~e~vellv~r----ganiehrdkkgf~plImaatagh~tvV~~llk~ha~v----------  816 (2131)
T KOG4369|consen  753 TEPNIKTNLTSA--CAGGHREEVELLVVR----GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV----------  816 (2131)
T ss_pred             cCcccccccccc--ccCccHHHHHHHHHh----cccccccccccchhhhhhcccCchHHHHHHHhhhhhh----------
Confidence            334678999999  999999999999886    7888889999999999999999999999999998874          


Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC--CCCCCcH
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE--GPNGKTA  211 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~t~  211 (424)
                      -...|..+.|+|.+||..|+.++|++||..|++-. .++....|||..|...|..++|..|+.+|..++.+  .+.|..|
T Consensus       817 eaQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisP  895 (2131)
T KOG4369|consen  817 EAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISP  895 (2131)
T ss_pred             hhhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcch
Confidence            23567889999999999999999999999999854 77888999999999999999999999999777755  5678899


Q ss_pred             HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcC
Q 014436          212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG  291 (424)
Q Consensus       212 L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~  291 (424)
                      |++|.+.    ++....+.|++.+.+.-.....+.+|.|.+|+..|..+++.+|+........+.. .|.|||+-++..|
T Consensus       896 Lmlatmn----gh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRak-tgltplme~AsgG  970 (2131)
T KOG4369|consen  896 LMLATMN----GHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAK-TGLTPLMEMASGG  970 (2131)
T ss_pred             hhhhhhc----cccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcc-cCCcccchhhcCC
Confidence            9999999    9999999999988775445566778999999999999999999887777666665 8999999999999


Q ss_pred             CHHHHHHHHhhCCCccccc-cCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436          292 HARTVETILSLAPECFELV-DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS  370 (424)
Q Consensus       292 ~~~~v~~Ll~~~~~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL  370 (424)
                      ..++-++|+..|+|..... .....|+|.+++..|+.+.+..|+..   .+.+..++.+|.|+|++|+.-|....+..|+
T Consensus       971 yvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg~lss~~il~ 1047 (2131)
T KOG4369|consen  971 YVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGGALSSCPILV 1047 (2131)
T ss_pred             ccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCCccccchHHh
Confidence            9999999999999973332 23456899999999999999999987   7889999999999999999999999998888


Q ss_pred             cccchhhhhhcCCCCchhhHHhhcCchhhHHHHHH
Q 014436          371 RTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI  405 (424)
Q Consensus       371 ~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  405 (424)
                      + +++|.+..|+.-.|+++-|. +.+++.+++.++
T Consensus      1048 ~-~~ad~d~qdnr~~S~~maaf-RKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1048 S-SVADADQQDNRTNSRTMAAF-RKGHFAIVKKMV 1080 (2131)
T ss_pred             h-cccChhhhhcccccccHHHH-Hhchhheecccc
Confidence            7 89999999999999999876 458998887443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.1e-26  Score=202.37  Aligned_cols=237  Identities=13%  Similarity=0.035  Sum_probs=187.5

Q ss_pred             cHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHh--CC
Q 014436           75 STKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF--PG  152 (424)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~--~~  152 (424)
                      .+..|.+++-..+..++....++     +|+..+..|+++.|+++|+++.--..     +-.++..++|+||+++.  .|
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~-----~~~~~~~~~~~L~~~~~n~~n  129 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSI-----IIKNCNSVQDLLLYYLSNAYV  129 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhh-----hhhccccccHHHHHHHHhcCC
Confidence            35555666666688888777777     99999999999999999998431100     11577889999999999  89


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC------CCCCCcHHHHHHHccccCCcHH
Q 014436          153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE------GPNGKTALHAAVMYFDFKGDHH  226 (424)
Q Consensus       153 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~t~L~~a~~~~~~~~~~~  226 (424)
                      +.+++++|+++|+++..   ..+.||+|.|+..++.+++++|+++|++....      +..+.+++|.|...    +..+
T Consensus       130 ~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~----~~~e  202 (437)
T PHA02795        130 EIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP----TVLE  202 (437)
T ss_pred             CHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc----CHHH
Confidence            99999999999999863   34589999999999999999999999753222      13467888888887    8999


Q ss_pred             HHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC--------HHHHHH
Q 014436          227 AMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH--------ARTVET  298 (424)
Q Consensus       227 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~--------~~~v~~  298 (424)
                      +++.|++.+++ ++.++..|.||||+|+..|+.+++++|...+...+..+. .|.||||.|+..|+        .+++++
T Consensus       203 Ive~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~-~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        203 IYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS-NGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             HHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            99999998877 689999999999999999999999999888888887776 89999999998884        689999


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                      |+++|+++ +...   .+.+...  ..+.++++.++++
T Consensus       281 LL~~gadI-~~~~---~~~~~~~--~~n~~~ik~lI~y  312 (437)
T PHA02795        281 LLREPLSI-DCIK---LAILNNT--IENHDVIKLCIKY  312 (437)
T ss_pred             HHhCCCCC-Cchh---HHhhhcc--cchHHHHHHHHHH
Confidence            99999886 3222   1222111  1255677777765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=3.8e-27  Score=182.25  Aligned_cols=240  Identities=22%  Similarity=0.204  Sum_probs=215.0

Q ss_pred             HhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 014436          136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA  215 (424)
Q Consensus       136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a  215 (424)
                      .++..|.+-+-.+...++.+++.....-.++.+...+..|+.+++.+.-.++...+..++.++...+..+--+++|+.++
T Consensus        57 ~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sls  136 (296)
T KOG0502|consen   57 LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLS  136 (296)
T ss_pred             HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHH
Confidence            45566777788889999999999998888887778888899999999999999999999999999999999999999999


Q ss_pred             HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHH
Q 014436          216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  295 (424)
                      +..    .+.+....+...   .++..|..|.|||.+|+..|+..++++|...+.+...... ...++|..|++.|..++
T Consensus       137 Vhq----l~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk-~resALsLAt~ggytdi  208 (296)
T KOG0502|consen  137 VHQ----LHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK-YRESALSLATRGGYTDI  208 (296)
T ss_pred             HHH----HHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh-hhhhhHhHHhcCChHHH
Confidence            986    665555554443   3688999999999999999999999999999988777766 66799999999999999


Q ss_pred             HHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccch
Q 014436          296 VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA  375 (424)
Q Consensus       296 v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~  375 (424)
                      |++|+.+++++ |..|.+|-|||.||++.++.++++.|+..   |++++..+..|++++..|+..|+. +++..++ +.+
T Consensus       209 V~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~  282 (296)
T KOG0502|consen  209 VELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHA  282 (296)
T ss_pred             HHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHhhhH-HHHHHHH-HHH
Confidence            99999999997 89999999999999999999999999998   999999999999999999999998 7888888 678


Q ss_pred             hhhhhcCCCCchhh
Q 014436          376 NYQAVNDQNVSVGH  389 (424)
Q Consensus       376 ~~~~~~~~g~t~l~  389 (424)
                      .....|+.-++|+|
T Consensus       283 lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  283 LKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhhcccCCCCCC
Confidence            88888988888875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=4.4e-26  Score=206.67  Aligned_cols=271  Identities=21%  Similarity=0.242  Sum_probs=216.3

Q ss_pred             CHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436           26 DPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA  105 (424)
Q Consensus        26 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  105 (424)
                      .+.+..|++.|+++.+..|++.-        .+..++-.+                  ....+..+..|.+|.|.||.|+
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~--------~~r~~~l~~------------------~trsds~n~qd~~gfTalhha~   57 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSK--------KGRSGLLFF------------------TTRSDSHNLQDYSGFTLLHHAV   57 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCC--------CCCCCCCCC------------------CCCCccccccCccchhHHHHHH
Confidence            45578899999999999998731        223333333                  1124455677889999999999


Q ss_pred             HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhc
Q 014436          106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES  185 (424)
Q Consensus       106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  185 (424)
                      .+|+.++++.|++..+.           +...|..|.+|||+|+.+|+.++++.++.++... ...+..|.||||.|+..
T Consensus        58 Lng~~~is~llle~ea~-----------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEAL-----------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQH  125 (854)
T ss_pred             hcCchHHHHHHhcchhh-----------hhhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhh
Confidence            99999999999999877           7888899999999999999999999999998554 47888899999999999


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHH
Q 014436          186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL  265 (424)
Q Consensus       186 ~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  265 (424)
                      |+.+++.+|+.+|+++..++..+.|++..|++.    |..+++..|++.  .. ...                    . +
T Consensus       126 gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf----gr~~Vvq~ll~~--~~-~~~--------------------~-~  177 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNNSKETVLDLASRF----GRAEVVQMLLQK--KF-PVQ--------------------S-S  177 (854)
T ss_pred             cchHHHHHHHhcCCCccccCcccccHHHHHHHh----hhhHHHHHHhhh--cc-chh--------------------h-c
Confidence            999999999999999999999999999999999    999999999986  11 110                    0 1


Q ss_pred             hhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccccc
Q 014436          266 EIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINE  345 (424)
Q Consensus       266 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~  345 (424)
                      ...+   .......+.+|+|.|+++|+.++++.|++.|.++ +.....| |+||.|+..|..+++.+|++.   |.+.+.
T Consensus       178 ~~~~---~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n~~t~~g-talheaalcgk~evvr~ll~~---gin~h~  249 (854)
T KOG0507|consen  178 LRVG---DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-NYTTEDG-TALHEAALCGKAEVVRFLLEI---GINTHI  249 (854)
T ss_pred             ccCC---CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-ccccccc-hhhhhHhhcCcchhhhHHHhh---cccccc
Confidence            1111   1122236678999999999999999999999887 5455444 899999999999999999988   888899


Q ss_pred             ccCCCCcHHHHHHhcC---Ccchhhhhc
Q 014436          346 GDAKGNTPLHVFAAVR---PSEFNRYMS  370 (424)
Q Consensus       346 ~d~~g~t~L~~A~~~~---~~~~~~~LL  370 (424)
                      +|.+|+|+|.+...+-   ..+++-++.
T Consensus       250 ~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  250 KNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             ccccchHHHHHHHhcchhhhhhhhhhhh
Confidence            9999999998876653   344444443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.8e-25  Score=221.35  Aligned_cols=240  Identities=23%  Similarity=0.189  Sum_probs=177.5

Q ss_pred             ccccccCCCHHHHHHHHcCCCchhHHHHHH--HHHHhhccccCCcchh-hhhhhHHhhhccHHHHHHHHHhCchhhhhhc
Q 014436           18 KAANQSQTDPKLLKAAADGNAEPFKDMARE--VIESLLTLQTRNTILH-INIMCQDAENASTKFVEEILEICPALLIQVN   94 (424)
Q Consensus        18 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (424)
                      .....+..+..|+.||..|+.+.++.+++.  +.+.+..|..|.|||| .|  +.+++.++++.|++.    +.    .+
T Consensus        10 ~~~~~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A--~~~~~~eiv~lLl~~----g~----~~   79 (743)
T TIGR00870        10 EESPLSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA--IENENLELTELLLNL----SC----RG   79 (743)
T ss_pred             cCCCCCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH--HhcChHHHHHHHHhC----CC----CC
Confidence            344456777889999999999999999998  7777788889999999 88  999999999999885    32    57


Q ss_pred             cCCCcHHHHHHHcC---cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           95 AKGDTPLHVAAKFG---HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        95 ~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      ..|.||||.|+..+   ...+++.+...+...... ..........+..|.||||+|+.+|+.+++++|+++|++++...
T Consensus        80 ~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~  158 (743)
T TIGR00870        80 AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPL-ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA  158 (743)
T ss_pred             CcChHHHHHHHhccHHHHHHHHHHHhhcccccCch-hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence            78999999998732   223334444333221000 00000011223579999999999999999999999999876321


Q ss_pred             -------------CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccC-----CcHHHHHHHHh
Q 014436          172 -------------NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK-----GDHHAMRQLFG  233 (424)
Q Consensus       172 -------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~-----~~~~~~~~Ll~  233 (424)
                                   ...|.||||.|+..++.+++++|+++|+|++..|..|+||||+|+....+.     ....+.+.++.
T Consensus       159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~  238 (743)
T TIGR00870       159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS  238 (743)
T ss_pred             CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence                         135899999999999999999999999999999999999999999862110     01234444444


Q ss_pred             hcCCc--c----cccCCCCChHHHHHHhcCChhHHHHHhhc
Q 014436          234 RKKSL--L----KVTDQYGWTPIHYAAYHGKYWINDLLEID  268 (424)
Q Consensus       234 ~~~~~--~----~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  268 (424)
                      .....  .    ...|..|.|||+.|+..|+.++.+++...
T Consensus       239 ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       239 LLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             HHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            43321  1    45678899999999999988888777653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2e-24  Score=213.90  Aligned_cols=244  Identities=18%  Similarity=0.097  Sum_probs=183.5

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhc--CCCCCCCCCCCCCcHHH-HHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          140 KKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLY-MAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .++.+++.|+..|+.+.++.+++.  +.+++ ..|..|+|||| .|+.+++.++++.|+++|+    .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            456889999999999999999998  66665 67889999999 8899999999999999997    6778999999998


Q ss_pred             HccccCCcHHHHHHHHhhcCC---------cccccCCCCChHHHHHHhcCChhHHHHHhhcccccccccc----------
Q 014436          217 MYFDFKGDHHAMRQLFGRKKS---------LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADK----------  277 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~~~~---------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~----------  277 (424)
                      .. ...+...++..+......         ........|.||||+|+..|+.+++++|...+...+....          
T Consensus        91 ~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        91 LE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             hc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            72 001222333443333321         0012235699999999999999999999888776654321          


Q ss_pred             ---CCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC---------ccchHHhhhCCcccccc--
Q 014436          278 ---DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ---------LQDLKPLLRNPFARILI--  343 (424)
Q Consensus       278 ---~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~ll~~~~~~~~i--  343 (424)
                         ..|.+|||.|+..++.+++++|++.|+++ +.+|..|+||||+|+..+.         ..+.+.+++......+.  
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence               25889999999999999999999999986 8899999999999999862         23445555542222333  


Q ss_pred             --ccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436          344 --NEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       344 --~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a  391 (424)
                        +..|..|.||||+|+..|+.++++.||. .+.+..........|.+++
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~~lLL~-~~~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLA-IKYKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHHHHHHH-HHHhcceeeccCcchHhHh
Confidence              6679999999999999999999999987 3443333333344444433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.4e-24  Score=215.99  Aligned_cols=174  Identities=21%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      .+.++||.|  +..|+.++++.|++.    +.+++..|..|.||||+|+..|+.++++.|+++|++           ++.
T Consensus       524 ~~~~~L~~A--a~~g~~~~l~~Ll~~----G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----------in~  586 (823)
T PLN03192        524 NMASNLLTV--ASTGNAALLEELLKA----KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----------VHI  586 (823)
T ss_pred             cchhHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----------CCC
Confidence            455666666  666776666666654    555666666777777777777777777777777666           455


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      +|.+|.||||+|+..|+.+++++|++.+....   ...|.++||.|+.+|+.++++.|+++|++++.+|..|.||||+|+
T Consensus       587 ~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~  663 (823)
T PLN03192        587 RDANGNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM  663 (823)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            66667777777777777777777766554322   233556777777777777777777777777777777777777777


Q ss_pred             HccccCCcHHHHHHHHhhcCCcccccCCCC-ChHHHHHHh
Q 014436          217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYG-WTPIHYAAY  255 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~t~l~~a~~  255 (424)
                      ..    ++.+++++|+..+++ ++..+..| .+|+..+..
T Consensus       664 ~~----g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        664 AE----DHVDMVRLLIMNGAD-VDKANTDDDFSPTELREL  698 (823)
T ss_pred             HC----CcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence            66    677777777766665 35555555 666666544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=3.4e-25  Score=171.52  Aligned_cols=239  Identities=21%  Similarity=0.225  Sum_probs=150.1

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ..++.+...|-.+.-..+...-.-  .....|.+.+..+  .+.++.+........   +++-....+.+|+..++.|+-
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s~--~~~~lge~~~~~~--~~s~nsd~~v~s~~~---~~~~~~~t~p~g~~~~~v~ap  105 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEISA--LRNALGESLLTVA--VRSGNSDVAVQSAQL---DPDAIDETDPEGWSALLVAAP  105 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHHH--HHHhcCCcccchh--hhcCCcHHHHHhhcc---CCCCCCCCCchhhhhhhhcCC
Confidence            457777777777766666653221  3444677777777  777777766655443   444455566677777777777


Q ss_pred             cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcC
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE  186 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  186 (424)
                      .++...+..++..|+.           .+..+..+.+|+.+++...+.+.+..+.+...  + ..|..|.|||.||+..|
T Consensus       106 ~~s~~k~sttltN~~r-----------gnevs~~p~s~~slsVhql~L~~~~~~~~n~V--N-~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen  106 CGSVDKVSTTLTNGAR-----------GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV--N-ACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             CCCcceeeeeeccccc-----------CCccccccCChhhHHHHHHHHHHHHHHhhccc--c-CccccCchHhHHHHhcC
Confidence            7777777777777766           44555667777777777766666665554332  2 56777778888887778


Q ss_pred             ChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHh
Q 014436          187 SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE  266 (424)
Q Consensus       187 ~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  266 (424)
                      +..+|++|++.|++++...+...++|.+|+..    |..++++.|+.+..+ ++.-|.+|-|||.+|++.++.++++.|.
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk~resALsLAt~g----gytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGKYRESALSLATRG----GYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             chHHHHHHHHcCCChhhhhhhhhhhHhHHhcC----ChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHH
Confidence            88888888887777777777777777777776    777777777766655 3555555555554444444444444444


Q ss_pred             hccccccccccCCCchHHHHHHhcCC
Q 014436          267 IDQTATNIADKDRKMTALHLAAGRGH  292 (424)
Q Consensus       267 ~~~~~~~~~~~~~~~t~l~~a~~~~~  292 (424)
                      ..+......++ .|++++..|+..|+
T Consensus       247 ~sGAd~t~e~d-sGy~~mdlAValGy  271 (296)
T KOG0502|consen  247 NSGADVTQEDD-SGYWIMDLAVALGY  271 (296)
T ss_pred             hcCCCcccccc-cCCcHHHHHHHhhh
Confidence            43333333222 44444444444444

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.6e-24  Score=194.38  Aligned_cols=240  Identities=23%  Similarity=0.194  Sum_probs=209.1

Q ss_pred             cHHHHHHhCCCHHHHHHHhhcCC------------CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCc
Q 014436          143 TALHDAMFPGNMEVVKILTREDP------------DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT  210 (424)
Q Consensus       143 t~L~~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t  210 (424)
                      +-+.-|++.|+.+.+..|++...            +-....|.+|.|+||.|+.+|+.++++.|+++.+-++..|..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            34667899999999999987521            122356778999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhc
Q 014436          211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR  290 (424)
Q Consensus       211 ~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~  290 (424)
                      |||+|+..    |+.++++.++.+... .+..+..|.||||.|++.|+.+++.+|...+.+....++ .+.|++..|++.
T Consensus        85 plhlaaw~----g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~qf  158 (854)
T KOG0507|consen   85 PLHLAAWN----GNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN-SKETVLDLASRF  158 (854)
T ss_pred             eEEehhhc----CcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCc-ccccHHHHHHHh
Confidence            99999998    999999999988854 688899999999999999999999999998888777776 888999999999


Q ss_pred             CCHHHHHHHHhhCCCc-------cccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCc
Q 014436          291 GHARTVETILSLAPEC-------FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS  363 (424)
Q Consensus       291 ~~~~~v~~Ll~~~~~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~  363 (424)
                      |..++++.|++..-..       -..++..+-+|||.|+++|+.++++.|++.   |.++|...+.| |+||.|+.+|..
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a---g~din~~t~~g-talheaalcgk~  234 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA---GFDINYTTEDG-TALHEAALCGKA  234 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc---CCCcccccccc-hhhhhHhhcCcc
Confidence            9999999998762111       123455677899999999999999999998   88899998888 999999999999


Q ss_pred             chhhhhccccchhhhhhcCCCCchhhHHhh
Q 014436          364 EFNRYMSRTTHANYQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       364 ~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~  393 (424)
                      ++++.||. .|.+..++|.+|+|.+++..+
T Consensus       235 evvr~ll~-~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  235 EVVRFLLE-IGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             hhhhHHHh-hccccccccccchHHHHHHHh
Confidence            99999998 899999999999999999864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.6e-22  Score=201.38  Aligned_cols=181  Identities=16%  Similarity=0.155  Sum_probs=159.8

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHH
Q 014436          171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI  250 (424)
Q Consensus       171 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  250 (424)
                      .+..+.++|+.|+..|+.++++.|++.|++++..|..|.||||+|+..    |+.++++.|++.+.+ ++.+|..|.|||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~----g~~~~v~~Ll~~gad-in~~d~~G~TpL  595 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK----GYEDCVLVLLKHACN-VHIRDANGNTAL  595 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----ChHHHHHHHHhcCCC-CCCcCCCCCCHH
Confidence            344567899999999999999999999999999999999999999999    999999999998776 688999999999


Q ss_pred             HHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch
Q 014436          251 HYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL  330 (424)
Q Consensus       251 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  330 (424)
                      |.|+..|+.+++++|...+...+   ...+.++||.|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv  671 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMV  671 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHH
Confidence            99999999999888876654422   235678999999999999999999999997 88999999999999999999999


Q ss_pred             HHhhhCCccccccccccCCC-CcHHHHHHhcCCc
Q 014436          331 KPLLRNPFARILINEGDAKG-NTPLHVFAAVRPS  363 (424)
Q Consensus       331 ~~ll~~~~~~~~i~~~d~~g-~t~L~~A~~~~~~  363 (424)
                      ++|++.   |++++..|..| .||++++......
T Consensus       672 ~~Ll~~---GAdv~~~~~~g~~t~~~l~~~~~~~  702 (823)
T PLN03192        672 RLLIMN---GADVDKANTDDDFSPTELRELLQKR  702 (823)
T ss_pred             HHHHHc---CCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            999998   99999999988 8999888665433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.5e-22  Score=160.30  Aligned_cols=147  Identities=17%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHH---HHHHHHHhchhcc
Q 014436           48 VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSD---IVRVLIDRAKLAQ  124 (424)
Q Consensus        48 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~~~~~~  124 (424)
                      |.+.+..+..+.++||.|  ++.|+.+.+..+++.+...+..++.+|..|+||||+|+..|+.+   ++++|++.|++  
T Consensus        10 ~~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad--   85 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD--   85 (166)
T ss_pred             chHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC--
Confidence            344444555566666666  66666654444444333445556666666666666666666543   35666666666  


Q ss_pred             cchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHHhh-cCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC
Q 014436          125 DGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKILTR-EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS  202 (424)
Q Consensus       125 ~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  202 (424)
                               ++.++ ..|.||||+|+..++.+++++|+. .+.++. ..+..|.||||+|+..++.+++++|+++|++++
T Consensus        86 ---------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         86 ---------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             ---------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                     44555 356666666666666666666663 566544 455666666666666666666666666666666


Q ss_pred             CCCCCC
Q 014436          203 HEGPNG  208 (424)
Q Consensus       203 ~~~~~~  208 (424)
                      .++..|
T Consensus       156 ~~~~~~  161 (166)
T PHA02743        156 DPLSIG  161 (166)
T ss_pred             CcccCC
Confidence            555544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-22  Score=177.71  Aligned_cols=231  Identities=22%  Similarity=0.187  Sum_probs=157.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHH
Q 014436          100 PLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPL  179 (424)
Q Consensus       100 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  179 (424)
                      .+.-|++.|..+-|+.|+..|+.           ++..+.+|.|+||-||...+.+||++|+++|++++ ..+..|+|||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~-----------~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPl  110 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS-----------PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPL  110 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC-----------ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcc
Confidence            45667888888888999988876           56788889999999999889999999999999877 7777899999


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCCh
Q 014436          180 YMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY  259 (424)
Q Consensus       180 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  259 (424)
                      |.|+..|+..++++|+.+|+++...+.+|..|...+..-    ...+++..-.......            .-+++..  
T Consensus       111 haaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e----a~~~~l~~~~~r~gi~------------iea~R~~--  172 (527)
T KOG0505|consen  111 HAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE----ATLDVLETEMARQGID------------IEAARKA--  172 (527)
T ss_pred             hhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc----chhHHHHHHHHHhccc------------HHHHhhh--
Confidence            999999999999999999988888888888887776543    3333333333222111            0011000  


Q ss_pred             hHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcc
Q 014436          260 WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFA  339 (424)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  339 (424)
                                         ...+.|+        ++-.++. .|.+. ...+..|-|+||.|+.+|..++.++|++.   
T Consensus       173 -------------------~e~~ml~--------D~~q~l~-~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a---  220 (527)
T KOG0505|consen  173 -------------------EEQTMLD--------DARQWLN-AGAEL-DARHARGATALHVAAANGYTEVAALLLQA---  220 (527)
T ss_pred             -------------------hHHHHHH--------HHHHHHh-ccccc-cccccccchHHHHHHhhhHHHHHHHHHHh---
Confidence                               0001111        1222222 44443 44555577777777777777777777776   


Q ss_pred             ccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhh
Q 014436          340 RILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       340 ~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~  393 (424)
                      |.+++.+|.+|+||||.|+.++..++++.|+. +|++++.++..|+||+++|..
T Consensus       221 g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  221 GYSVNIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccCcccccccCCCcccHHHHhhhHhHHHHHHH-hhcccchhhhcCCCCccchhh
Confidence            66677777777777777777777777764444 777777777777777777754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=3.1e-22  Score=175.59  Aligned_cols=209  Identities=21%  Similarity=0.199  Sum_probs=152.1

Q ss_pred             HHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCc
Q 014436          145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD  224 (424)
Q Consensus       145 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~  224 (424)
                      +.-|+..|..+-++.|+..|+..+ ..+.+|.|+||-+|...+.+||++|+++|++++..|..++||+|.|+..    ++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~-~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc----g~  118 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPN-LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC----GY  118 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCcc-ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc----cc
Confidence            456778889999999999888864 7788899999999999999999999999999999999999999999888    99


Q ss_pred             HHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436          225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP  304 (424)
Q Consensus       225 ~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  304 (424)
                      ..++.+|++.+++. ...+..|..|+..+......                      +.+..++..-..+ ++       
T Consensus       119 ~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~----------------------~~l~~~~~r~gi~-ie-------  167 (527)
T KOG0505|consen  119 LNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATL----------------------DVLETEMARQGID-IE-------  167 (527)
T ss_pred             HHHHHHHHHhhhhh-hhccCCCCCccccccCcchh----------------------HHHHHHHHHhccc-HH-------
Confidence            99999999988874 55666666666544322111                      1111111110000 00       


Q ss_pred             CccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCC
Q 014436          305 ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQN  384 (424)
Q Consensus       305 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g  384 (424)
                         ..+...-++-|+-+         ...+..   |...+.++..|-|+||+|+..|..++.+.||. +|.+++++|..|
T Consensus       168 ---a~R~~~e~~ml~D~---------~q~l~~---G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dg  231 (527)
T KOG0505|consen  168 ---AARKAEEQTMLDDA---------RQWLNA---GAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDG  231 (527)
T ss_pred             ---HHhhhhHHHHHHHH---------HHHHhc---cccccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccC
Confidence               00111111222211         222223   77888888889999999999999999988877 899999999999


Q ss_pred             CchhhHHhhcCchhhHHHHHHH
Q 014436          385 VSVGHIMKYGYPELLVINLSIL  406 (424)
Q Consensus       385 ~t~l~~a~~~~~~~~~~~~~~~  406 (424)
                      +||+|.|+ .|++-...++.+.
T Consensus       232 WtPlHAAA-~Wg~~~~~elL~~  252 (527)
T KOG0505|consen  232 WTPLHAAA-HWGQEDACELLVE  252 (527)
T ss_pred             CCcccHHH-HhhhHhHHHHHHH
Confidence            99999998 5888888775554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.2e-22  Score=166.04  Aligned_cols=163  Identities=25%  Similarity=0.281  Sum_probs=140.8

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC-----CCHHHHHHHhhcC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP-----GNMEVVKILTRED  164 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~~  164 (424)
                      +|..|.+|+|+||||+..+++++|+.|++.|.-.          ++..|.-|.||++.++..     .+.++|..|.+-|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~----------VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg  330 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCD----------VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG  330 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccc----------ccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc
Confidence            4778999999999999999999999999988432          778889999999888754     4678888888765


Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCC
Q 014436          165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQ  244 (424)
Q Consensus       165 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  244 (424)
                      . ++.....-|+|+|++|+..|+.++|+.|+..|+|+|.+|.+|.|+|++|+.+    |+.++++.|+.....+....|.
T Consensus       331 n-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EH----GhkEivklLLA~p~cd~sLtD~  405 (452)
T KOG0514|consen  331 D-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEH----GHKEIVKLLLAVPSCDISLTDV  405 (452)
T ss_pred             C-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhh----ChHHHHHHHhccCcccceeecC
Confidence            4 4556677799999999999999999999999999999999999999999999    9999999999999888888999


Q ss_pred             CCChHHHHHHhcCChhHHHHHhh
Q 014436          245 YGWTPIHYAAYHGKYWINDLLEI  267 (424)
Q Consensus       245 ~~~t~l~~a~~~~~~~~~~~l~~  267 (424)
                      +|.|.|.+|...|+.+|..+|..
T Consensus       406 DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  406 DGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CCchhhhhHHhcCchHHHHHHHH
Confidence            99999999999998887666643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=5.4e-21  Score=152.62  Aligned_cols=144  Identities=14%  Similarity=0.153  Sum_probs=124.5

Q ss_pred             chhhhhhccCCCcHHHHHHHcCcH----HHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHH---HHHH
Q 014436           87 PALLIQVNAKGDTPLHVAAKFGHS----DIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME---VVKI  159 (424)
Q Consensus        87 ~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~---~v~~  159 (424)
                      +..++..+.++.++||.||+.|+.    +++++|++.|..           ++.+|..|+||||+|+..|+.+   ++++
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-----------~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~   78 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-----------LHRYDHHGRQCTHMVAWYDRANAVMKIEL   78 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-----------hhccCCCCCcHHHHHHHhCccCHHHHHHH
Confidence            456667788899999999999998    666678888876           7788999999999999998765   4899


Q ss_pred             HhhcCCCCCCCCC-CCCCcHHHHHHhcCChHHHHHHHH-hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          160 LTREDPDYPYSAN-DYGKTPLYMAAESESSDMVLTLLE-NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       160 Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      |++.|++++ .++ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..    ++.+++++|+..++.
T Consensus        79 Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~----~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         79 LVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM----RDRRMMEILRANGAV  153 (166)
T ss_pred             HHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC
Confidence            999999987 455 589999999999999999999995 7999999999999999999998    999999999998876


Q ss_pred             cccccCCCCC
Q 014436          238 LLKVTDQYGW  247 (424)
Q Consensus       238 ~~~~~~~~~~  247 (424)
                       ++.++..|.
T Consensus       154 -~~~~~~~~~  162 (166)
T PHA02743        154 -CDDPLSIGL  162 (166)
T ss_pred             -CCCcccCCc
Confidence             466665553

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.2e-22  Score=166.00  Aligned_cols=161  Identities=23%  Similarity=0.233  Sum_probs=125.0

Q ss_pred             CCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC-----hhHHHHHhhccccccccc
Q 014436          202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK-----YWINDLLEIDQTATNIAD  276 (424)
Q Consensus       202 ~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~~~~~~~  276 (424)
                      |..|.+|.|+|||++.+    .+.++++.|+..+..+++..+.-|+||+++++...-     ..++.-|-..+.. +..-
T Consensus       262 NlaDsNGNTALHYsVSH----aNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKA  336 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSH----ANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKA  336 (452)
T ss_pred             hhhcCCCCeeeeeeecc----cchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhh
Confidence            45566677777777766    677777777777766666777777777766654321     1133333333333 4444


Q ss_pred             cCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHH
Q 014436          277 KDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV  356 (424)
Q Consensus       277 ~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~  356 (424)
                      ...|+|+|++|+.+|+.++|+.||..|+++ |..|.+|.|+|++|+.+|+.|+++.||..+  ++|+...|.+|-|+|.+
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p--~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVP--SCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccC--cccceeecCCCchhhhh
Confidence            458999999999999999999999999997 899999999999999999999999999986  89999999999999999


Q ss_pred             HHhcCCcchhhhhc
Q 014436          357 FAAVRPSEFNRYMS  370 (424)
Q Consensus       357 A~~~~~~~~~~~LL  370 (424)
                      |...|+.++...|-
T Consensus       414 Aleagh~eIa~mlY  427 (452)
T KOG0514|consen  414 ALEAGHREIAVMLY  427 (452)
T ss_pred             HHhcCchHHHHHHH
Confidence            99999999886553

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=9.4e-21  Score=152.12  Aligned_cols=138  Identities=19%  Similarity=0.180  Sum_probs=117.1

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCC----HHHHHHHhhcCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN----MEVVKILTREDP  165 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~  165 (424)
                      ++.+|..|.||||+|+..|+.++++.|+.......     ....++.+|..|+||||+|+..|+    .+++++|++.|+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~-----~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDC-----HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccch-----hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            34578899999999999999999999865320000     011178899999999999999998    589999999999


Q ss_pred             CCCCCCC-CCCCcHHHHHHhcCChHHHHHHHH-hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          166 DYPYSAN-DYGKTPLYMAAESESSDMVLTLLE-NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       166 ~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      +++ .++ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..    ++.++++.|+.....
T Consensus        89 din-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~----~~~~iv~~L~~~~~~  157 (169)
T PHA02741         89 DIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN----EDVAMMQILREIVAT  157 (169)
T ss_pred             CCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC----CCHHHHHHHHHHHHH
Confidence            987 555 489999999999999999999998 5999999999999999999999    999999999886543

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=5.6e-21  Score=153.42  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=117.9

Q ss_pred             hccccCCcchhhhhhhHHhhhccHHHHHHHH--HhCchhhhhhccCCCcHHHHHHHcCc----HHHHHHHHHhchhcccc
Q 014436           53 LTLQTRNTILHINIMCQDAENASTKFVEEIL--EICPALLIQVNAKGDTPLHVAAKFGH----SDIVRVLIDRAKLAQDG  126 (424)
Q Consensus        53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~  126 (424)
                      ..+..|.|+||+|  ++.|+.++++.|+...  ...+..++.+|..|.||||+|+..|+    .+++++|++.|++    
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----   89 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----   89 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----
Confidence            5667899999999  9999999999987653  12356788899999999999999998    5899999999998    


Q ss_pred             hHHHHHHHHHhcC-CCCcHHHHHHhCCCHHHHHHHhhc-CCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          127 DEAARQMIRMVNN-KKNTALHDAMFPGNMEVVKILTRE-DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       127 ~~~~~~~i~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                             ++.++. .|.||||+|+..++.+++++|++. +.++. ..+..|+||||+|+..++.++++.|++.++.
T Consensus        90 -------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 -------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             -------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   567775 899999999999999999999974 88865 7788999999999999999999999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.2e-20  Score=159.27  Aligned_cols=156  Identities=18%  Similarity=0.147  Sum_probs=123.4

Q ss_pred             hhhhccCCCcH-HHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh----cCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 014436           90 LIQVNAKGDTP-LHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV----NNKKNTALHDAMFPGNMEVVKILTRED  164 (424)
Q Consensus        90 ~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~~  164 (424)
                      +..+|..+.|+ ||.|++.|+.+++++|+++|++           ++.+    +..|.||||+|+..++.+++++|+++|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-----------iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G   93 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD-----------PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG   93 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-----------ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            34567777765 6667777899999999999998           4444    458999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCC
Q 014436          165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQ  244 (424)
Q Consensus       165 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  244 (424)
                      ++++...+..|.||||.|+..++.+++++|+++|++++.+|..|.||||+|+..    ++.+++..+..      ...+.
T Consensus        94 ADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~----~~~~~~~~~~~------~~~~~  163 (300)
T PHA02884         94 ADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI----CNNFLAFMICD------NEISN  163 (300)
T ss_pred             CCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh----CChhHHHHhcC------Ccccc
Confidence            998744566799999999999999999999999999999999999999999987    77776644432      12355


Q ss_pred             CCChHHHHHHhcCChhHHHHHhhcc
Q 014436          245 YGWTPIHYAAYHGKYWINDLLEIDQ  269 (424)
Q Consensus       245 ~~~t~l~~a~~~~~~~~~~~l~~~~  269 (424)
                      .+.+|.+++.   +.++.++|..+.
T Consensus       164 ~~~~~~~~~~---n~ei~~~Lish~  185 (300)
T PHA02884        164 FYKHPKKILI---NFDILKILVSHF  185 (300)
T ss_pred             cccChhhhhc---cHHHHHHHHHHH
Confidence            5667777642   345555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=7.5e-21  Score=150.72  Aligned_cols=98  Identities=19%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             HHHhcCCCCcHHHHHHhCCCH---HHHHHHhhcCCCCCCCCC-CCCCcHHHHHHhcCChHHHHHHHH-hCCCCCCCCCCC
Q 014436          134 IRMVNNKKNTALHDAMFPGNM---EVVKILTREDPDYPYSAN-DYGKTPLYMAAESESSDMVLTLLE-NCTSLSHEGPNG  208 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~  208 (424)
                      ++.+|.+|.||||+|+..|+.   +++++|++.|++++ .++ ..|.||||+|+..++.+++++|++ .|++++.++..|
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC
Confidence            334455555555555555543   23455555555544 222 345555555555555555555554 245555555555


Q ss_pred             CcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          209 KTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       209 ~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      .||||+|+..    ++.++++.|+..++
T Consensus       127 ~tpL~~A~~~----~~~~i~~~Ll~~ga  150 (154)
T PHA02736        127 KTPYYVACER----HDAKMMNILRAKGA  150 (154)
T ss_pred             CCHHHHHHHc----CCHHHHHHHHHcCC
Confidence            5555555554    55555555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=6.9e-20  Score=145.19  Aligned_cols=96  Identities=17%  Similarity=0.139  Sum_probs=62.7

Q ss_pred             CCCCCCcHHHHHHhcCCh---HHHHHHHHhCCCCCCCC-CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCC
Q 014436          171 ANDYGKTPLYMAAESESS---DMVLTLLENCTSLSHEG-PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG  246 (424)
Q Consensus       171 ~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~  246 (424)
                      .+..|.||||+|+..++.   +++++|++.|++++.++ ..|.||||+|+..    ++.+++++|+......++..+..|
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~----~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT----QNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHh----CCHHHHHHHHhCCCCCCccccCCC
Confidence            355567777777776655   34666777777777666 3677777777776    677777777664333356667777


Q ss_pred             ChHHHHHHhcCChhHHHHHhhccc
Q 014436          247 WTPIHYAAYHGKYWINDLLEIDQT  270 (424)
Q Consensus       247 ~t~l~~a~~~~~~~~~~~l~~~~~  270 (424)
                      .||||+|+..|+.+++++|...+.
T Consensus       127 ~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736        127 KTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            777777777776666666655443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=8.9e-21  Score=162.66  Aligned_cols=153  Identities=14%  Similarity=0.043  Sum_probs=100.1

Q ss_pred             ccccCCcc-hhhhhhhHHhhhccHHHHHHHHHhCchhhhhh----ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchH
Q 014436           54 TLQTRNTI-LHINIMCQDAENASTKFVEEILEICPALLIQV----NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDE  128 (424)
Q Consensus        54 ~~~~g~t~-L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  128 (424)
                      .|..|.|+ ||.|  +..++.+++++|++.    |++++.+    +..|.||||+|+..|+.+++++|+++|++      
T Consensus        28 ~d~~~~~~lL~~A--~~~~~~eivk~LL~~----GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------   95 (300)
T PHA02884         28 KNKICIANILYSS--IKFHYTDIIDAILKL----GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------   95 (300)
T ss_pred             cCcCCCCHHHHHH--HHcCCHHHHHHHHHC----CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            44445443 4444  555677777777765    5566655    34677777777777777777777777777      


Q ss_pred             HHHHHHHHh-cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCC
Q 014436          129 AARQMIRMV-NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN  207 (424)
Q Consensus       129 ~~~~~i~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  207 (424)
                           ++.. +..|.||||.|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++..+...+     .+..
T Consensus        96 -----VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~  164 (300)
T PHA02884         96 -----VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICDNE-----ISNF  164 (300)
T ss_pred             -----cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcCCc-----cccc
Confidence                 4443 3467777777777777777777777777765 56667777777777777766665444221     3445


Q ss_pred             CCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          208 GKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       208 ~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      +.+|++++       ++.++++.|+++..
T Consensus       165 ~~~~~~~~-------~n~ei~~~Lish~v  186 (300)
T PHA02884        165 YKHPKKIL-------INFDILKILVSHFI  186 (300)
T ss_pred             ccChhhhh-------ccHHHHHHHHHHHH
Confidence            56666654       45667777766664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=6.4e-20  Score=136.97  Aligned_cols=141  Identities=23%  Similarity=0.212  Sum_probs=124.7

Q ss_pred             HHHHHHhcCChh-HHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCc
Q 014436          249 PIHYAAYHGKYW-INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQL  327 (424)
Q Consensus       249 ~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~  327 (424)
                      .+.+|+..+... +.++|.......+.++. +|+||||-|+.+|+.++|+.|+..|++. +.+...|+||||.||..++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            456677777666 77777777777777776 9999999999999999999999999997 88999999999999999999


Q ss_pred             cchHHhhhCCccccccccccCCCCcHHHHHHhcCCc-chhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436          328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS-EFNRYMSRTTHANYQAVNDQNVSVGHIMKYG  394 (424)
Q Consensus       328 ~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~-~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~  394 (424)
                      +++-.|+++   |+++|+......||||+|+.+++. ..+++||...+..+..++..++||+++|.+-
T Consensus       144 ~va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  144 EVAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             hHHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            999999999   999999999999999999988765 4566788888999999999999999999754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.4e-19  Score=133.14  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=125.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      ..+.+|+..+....|+.|++..++.          ++.+|.+|.||||.|+.+|+.++|+.|+.+|++.. .+...|+||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~----------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTP  133 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANH----------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTP  133 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccc----------ccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccc
Confidence            3467899999999999999998875          88999999999999999999999999999999966 666679999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC
Q 014436          179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK  258 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~  258 (424)
                      ||.||...+.+++..|+++|+|++.......||||+++..   ......+.+|+..........+..+.||+.+|-+.+-
T Consensus       134 LhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~---rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  134 LHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGN---RNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcc---cchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999999999999999999999999999999999976   2344566677666555556677788899998887764


Q ss_pred             h
Q 014436          259 Y  259 (424)
Q Consensus       259 ~  259 (424)
                      .
T Consensus       211 s  211 (228)
T KOG0512|consen  211 S  211 (228)
T ss_pred             h
Confidence            3

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=8.7e-20  Score=147.69  Aligned_cols=126  Identities=23%  Similarity=0.236  Sum_probs=113.5

Q ss_pred             HHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccc
Q 014436          261 INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR  340 (424)
Q Consensus       261 ~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~  340 (424)
                      +.-+|.....+.+.-++ .|.+|||+|++.|+..+++.|+++|+.+ |..+....||||+|+.+|+.++|+.|++.   .
T Consensus        16 vrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~---k   90 (448)
T KOG0195|consen   16 VRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSR---K   90 (448)
T ss_pred             EEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHH---h
Confidence            44455555555444444 8999999999999999999999999997 77888889999999999999999999998   8


Q ss_pred             cccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          341 ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       341 ~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      +|+|+.++.|+|||||||..|...+.+-|+. .|+-+++-|+.|.||++-|+
T Consensus        91 advnavnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   91 ADVNAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             cccchhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhc
Confidence            9999999999999999999999999999998 89999999999999999985

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=9.1e-18  Score=155.11  Aligned_cols=242  Identities=19%  Similarity=0.178  Sum_probs=162.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC---CCHHHHHHHhhcCCCCC----CC
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP---GNMEVVKILTREDPDYP----YS  170 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~----~~  170 (424)
                      +.++..|...+..+....|...+...  .......-++.+...|.|.||.|..+   ++.++++.|++.-+...    ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~--k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKS--KYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhh--hhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            36788888888888877777665321  00011111556677899999999974   45689999998866432    23


Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHH
Q 014436          171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI  250 (424)
Q Consensus       171 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  250 (424)
                      ....|+||||+|+.+.+.++|++|++.|+|++.+.          +      |.             .+...|..+..  
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa----------~------G~-------------FF~~~dqk~~r--  228 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA----------C------GA-------------FFCPDDQKASR--  228 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh----------h------cc-------------ccCcccccccc--
Confidence            34589999999999999999999999999987532          1      11             01111111100  


Q ss_pred             HHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch
Q 014436          251 HYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL  330 (424)
Q Consensus       251 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  330 (424)
                          ..              ....-....|..||-.|+=.++.+++++|+++|+|+ +.+|..|+|.||..+.+-..++.
T Consensus       229 ----k~--------------T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  229 ----KS--------------TNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             ----cc--------------cCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHH
Confidence                00              000001146777888777777888888888888886 77888888888888877777777


Q ss_pred             HHhhhCCccccc--cccccCCCCcHHHHHHhcCCcchhhhhccc-------------cchhhhhhcCC--CCchhhHHhh
Q 014436          331 KPLLRNPFARIL--INEGDAKGNTPLHVFAAVRPSEFNRYMSRT-------------THANYQAVNDQ--NVSVGHIMKY  393 (424)
Q Consensus       331 ~~ll~~~~~~~~--i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~-------------~g~~~~~~~~~--g~t~l~~a~~  393 (424)
                      ..+++.   |++  ...+|..|-|||.+|++.|+.++++.+|+.             ...+++..|..  ..++|.++++
T Consensus       290 ~~~L~~---ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvy  366 (782)
T KOG3676|consen  290 DLALEL---GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVY  366 (782)
T ss_pred             HHHHhc---CCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhc
Confidence            778777   555  777778888888888888888888877775             12334444443  4557777765


Q ss_pred             c
Q 014436          394 G  394 (424)
Q Consensus       394 ~  394 (424)
                      +
T Consensus       367 g  367 (782)
T KOG3676|consen  367 G  367 (782)
T ss_pred             C
Confidence            5

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=4e-18  Score=138.12  Aligned_cols=118  Identities=29%  Similarity=0.326  Sum_probs=74.7

Q ss_pred             chhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCC
Q 014436           87 PALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD  166 (424)
Q Consensus        87 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  166 (424)
                      ..++|.-|..|.+|||+||+.|+..+|++|++.|+.           ++..+....||||.|+..|+.++|+.|++..++
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgar-----------vn~tnmgddtplhlaaahghrdivqkll~~kad   92 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----------VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD   92 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccc-----------cccccCCCCcchhhhhhcccHHHHHHHHHHhcc
Confidence            344555566666666666666666666666666665           455555556666666666666666666666666


Q ss_pred             CCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          167 YPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       167 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      ++ ..+..|.||||+||..|.-.+.+-|+..|+.++..++.|.|||..|-
T Consensus        93 vn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   93 VN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             cc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            55 55666666666666666666666666666666666666666666554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.1e-17  Score=119.25  Aligned_cols=89  Identities=35%  Similarity=0.501  Sum_probs=74.1

Q ss_pred             HHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHH
Q 014436          101 LHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLY  180 (424)
Q Consensus       101 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  180 (424)
                      ||.|++.|+.+++++|++.+.+..           .    |.||||+|+..|+.+++++|+++|++++ .++..|+||||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-----------~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~   64 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-----------L----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALH   64 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-----------S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-----------C----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHH
Confidence            688999999999999999887632           2    7889999999999999999999998876 67788999999


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCCC
Q 014436          181 MAAESESSDMVLTLLENCTSLSHEG  205 (424)
Q Consensus       181 ~A~~~~~~~~v~~Ll~~~~~~~~~~  205 (424)
                      +|+.+++.+++++|+++|++++.+|
T Consensus        65 ~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   65 YAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999998888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=9.7e-18  Score=119.56  Aligned_cols=89  Identities=31%  Similarity=0.359  Sum_probs=80.6

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCc
Q 014436          284 LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS  363 (424)
Q Consensus       284 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~  363 (424)
                      ||.|++.++.+++++|++.+.++ +.    |+||||+|+..|+.+++++|++.   |++++.+|..|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCCH
Confidence            78999999999999999988775 32    88999999999999999999998   899999999999999999999999


Q ss_pred             chhhhhccccchhhhhhc
Q 014436          364 EFNRYMSRTTHANYQAVN  381 (424)
Q Consensus       364 ~~~~~LL~~~g~~~~~~~  381 (424)
                      +++++|++ +|++++.+|
T Consensus        73 ~~~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHHHH-TTT-TTSS-
T ss_pred             HHHHHHHH-cCCCCCCcC
Confidence            99999998 799999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=9.8e-17  Score=122.95  Aligned_cols=124  Identities=31%  Similarity=0.509  Sum_probs=106.5

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      .|..|.||||+|+..|+.+++++|++++.+           .+..+..|.||+|.|+..++.+++++|++.++... ..+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-----------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~   70 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-----------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARD   70 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-----------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccC
Confidence            456789999999999999999999999876           34677788999999999999999999999887655 556


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF  232 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll  232 (424)
                      ..|.||+|+|+..++.+++++|++.+.+++..+..+.||+++|...    ++.+++++|+
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~Ll  126 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN----GHLEVVKLLL  126 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc----CCHHHHHHhC
Confidence            7888999999999999999999999888888888899999999988    8888887764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=7.4e-17  Score=149.16  Aligned_cols=200  Identities=20%  Similarity=0.229  Sum_probs=156.3

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHH---------HHhhccccCCcchhhhhhh-HHhhhccHHHHHHHHHhCchhhhh----
Q 014436           27 PKLLKAAADGNAEPFKDMAREVI---------ESLLTLQTRNTILHINIMC-QDAENASTKFVEEILEICPALLIQ----   92 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~---------~~~~~~~~g~t~L~~A~~~-~~~~~~~~~~l~~~~~~~~~~~~~----   92 (424)
                      ..+..|...|+++....++..+-         +...+...|.|+||.|++. ..++.++++.|++..   |..+|.    
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~---p~lind~~~~  179 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIF---PKLINDIYTS  179 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHh---HHHhhhhhhh
Confidence            56888999999988888877552         1224456799999999432 345557788888774   444443    


Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHH----------HHHHHHH--hcCCCCcHHHHHHhCCCHHHHHHH
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEA----------ARQMIRM--VNNKKNTALHDAMFPGNMEVVKIL  160 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~~i~~--~~~~g~t~L~~A~~~~~~~~v~~L  160 (424)
                      ....|.||||.|+.+.+.++|++|++.|+|++..-..          .+..-+.  .-..|..||..|+..++.+++++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            3456999999999999999999999999997621100          0000000  012478899999999999999999


Q ss_pred             hhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC--CCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436          161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS--LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR  234 (424)
Q Consensus       161 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~  234 (424)
                      +++|+|++ .+|..|.|.||..+..-..++...++++|++  ...++..|-|||.+|+.-    |+.++.+.+++.
T Consensus       260 l~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAakl----Gk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKL----GKKEMFQHILER  330 (782)
T ss_pred             HhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHh----hhHHHHHHHHHh
Confidence            99999976 8999999999999998888999999999988  888899999999999998    999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=4.2e-16  Score=119.44  Aligned_cols=123  Identities=33%  Similarity=0.457  Sum_probs=107.1

Q ss_pred             cccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHH
Q 014436           55 LQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI  134 (424)
Q Consensus        55 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i  134 (424)
                      +..|.||||+|  +..++.+++++|++.    +...+..+..|.||||.|+..++.+++++|++.+..           +
T Consensus         4 ~~~g~t~l~~a--~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-----------~   66 (126)
T cd00204           4 DEDGRTPLHLA--ASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-----------V   66 (126)
T ss_pred             CcCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------c
Confidence            45799999999  999999999998886    444467888999999999999999999999999875           5


Q ss_pred             HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHH
Q 014436          135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL  195 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  195 (424)
                      +..+..|.||+|+|+..++.+++++|++++.+.. ..+..|.||++.|+..++.+++++|+
T Consensus        67 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          67 NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            5677889999999999999999999999987755 67788999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=7.6e-16  Score=102.45  Aligned_cols=102  Identities=19%  Similarity=0.182  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ..+.+++++|.++.||..+.+|.+.+..- .|++|||+|  +.+|+.+++++|+..    ++.++.+|..|.|||..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyA--AD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYA--ADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHh--hhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            35889999999999999999997665544 899999999  999999999999998    89999999999999999999


Q ss_pred             cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHH
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALH  146 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~  146 (424)
                      .||.++|++|++.|++.           .....+|.+.+.
T Consensus        77 EGH~~cVklLL~~GAdr-----------t~~~PdG~~~~e  105 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR-----------TIHAPDGTALIE  105 (117)
T ss_pred             HhhHHHHHHHHHcCccc-----------ceeCCCchhHHh
Confidence            99999999999999983           345566766554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=1.5e-14  Score=96.30  Aligned_cols=104  Identities=23%  Similarity=0.307  Sum_probs=90.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      .-+.+++++|..+-|+..+..|-+           ++.. ..|++|||+|+..|+.+++++|+..|+++. .+|+.|.||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-----------Vn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITP   70 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-----------VNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITP   70 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-----------HHHH-hCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcH
Confidence            346788999999999999988865           3332 388999999999999999999999999987 899999999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 014436          179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA  215 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a  215 (424)
                      |..|+..|+.+||++|++.|++-....++|.+.+..+
T Consensus        71 LLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999999888888888776653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=1.1e-13  Score=118.15  Aligned_cols=131  Identities=31%  Similarity=0.407  Sum_probs=120.3

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCC-----HHHHHHHhhcC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN-----MEVVKILTRED  164 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~  164 (424)
                      ....+..+.+++|.++..+..+++++++..|.+           ++.++..|.||||+|+..++     .++++.|++.|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g  134 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-----------VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG  134 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-----------cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcC
Confidence            344566689999999999999999999999998           67889999999999999999     99999999999


Q ss_pred             C--CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          165 P--DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       165 ~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      +  +.....+..|.||||+|+..|+.++++.|++.|++++.++..|.|+++.|+..    +..+++..+...+
T Consensus       135 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~----~~~~~~~~l~~~~  203 (235)
T COG0666         135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN----GRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc----chHHHHHHHHhcC
Confidence            9  66767899999999999999999999999999999999999999999999998    9999999998865

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=8.9e-15  Score=92.96  Aligned_cols=50  Identities=30%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             cccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436          341 ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       341 ~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a  391 (424)
                      .+++.+|..|+||||+|+..|+.+++++|| +.|++++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            789999999999999999999999999999 48999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=1.3e-12  Score=111.50  Aligned_cols=132  Identities=22%  Similarity=0.253  Sum_probs=85.7

Q ss_pred             CCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436          170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP  249 (424)
Q Consensus       170 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  249 (424)
                      ..+..+.++++.++..+..+++++++..+++++.++..|.||+|+|+..    ++.                        
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~----~~~------------------------  119 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN----GNP------------------------  119 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc----CCc------------------------
Confidence            4455577888888888888888888888888888888888888888877    552                        


Q ss_pred             HHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC--CccccccCCCCcHHHHHHHcCCc
Q 014436          250 IHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP--ECFELVDNRRWNFLHYAVASFQL  327 (424)
Q Consensus       250 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~l~~A~~~~~~  327 (424)
                                                             ..++.++++.|++.|+  +..+..+..|+||||+|+..++.
T Consensus       120 ---------------------------------------~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~  160 (235)
T COG0666         120 ---------------------------------------PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA  160 (235)
T ss_pred             ---------------------------------------ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCch
Confidence                                                   2334455555555555  34444555566666666666665


Q ss_pred             cchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       328 ~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      ++++.+++.   +++++.++..|.|+++.|+..++.++++.++.
T Consensus       161 ~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         161 DIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             HHHHHHHhc---CCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            556666555   55555556666666666666666666655554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=1.9e-13  Score=86.55  Aligned_cols=54  Identities=39%  Similarity=0.596  Sum_probs=45.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHh
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILT  161 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll  161 (424)
                      |.||||+|++.|+.+++++|+++|.+           ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-----------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-----------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-----------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-----------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988           7788999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=1e-12  Score=127.71  Aligned_cols=106  Identities=24%  Similarity=0.224  Sum_probs=95.0

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      +.|+.|+..|+.+.++.|++.|++           ++.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|.||
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-----------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~Tp  151 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-----------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTP  151 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCH
Confidence            458899999999999999999998           67889999999999999999999999999999976 788999999


Q ss_pred             HHHHHhcCChHHHHHHHHh-------CCCCCCCCCCCCcHHHHHH
Q 014436          179 LYMAAESESSDMVLTLLEN-------CTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~-------~~~~~~~~~~~~t~L~~a~  216 (424)
                      ||+|+..++.+++++|+++       +++.+..+..|.+++..+.
T Consensus       152 Lh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        152 LELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999999999999       7777777777776655443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=2.2e-13  Score=86.18  Aligned_cols=54  Identities=31%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436          314 RWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS  370 (424)
Q Consensus       314 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL  370 (424)
                      |+||||+|+..|+.+++++|++.   +.+++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~---~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH---GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT---TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666665   5666666666666666666666666666654

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=3e-13  Score=118.91  Aligned_cols=115  Identities=27%  Similarity=0.282  Sum_probs=55.9

Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA  183 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  183 (424)
                      |+..|.+++|+..+..-.|           ....+.+|.|+||-|+..|+.+||++||+.|++++ ..|.+|+||||.|+
T Consensus       557 aaLeGEldlVq~~i~ev~D-----------pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTD-----------PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAA  624 (752)
T ss_pred             hhhcchHHHHHHHHHhhcC-----------CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhh
Confidence            4455555555555544443           22344455555555555555555555555555544 45555555555555


Q ss_pred             hcCChHHHHHHHHhCCCCC-CCCCCCCcHHHHHHHccccCCcHHHHHHHH
Q 014436          184 ESESSDMVLTLLENCTSLS-HEGPNGKTALHAAVMYFDFKGDHHAMRQLF  232 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~~~-~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll  232 (424)
                      ..++.-+++.|++.|+-+- ..-.++.|+...|-..  .+|...+.++|.
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~  672 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM--EEGYDQCSQYLY  672 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchh--hhhHHHHHHHHH
Confidence            5555555555555553322 1223344444444322  114444455443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=3.5e-12  Score=103.91  Aligned_cols=122  Identities=21%  Similarity=0.275  Sum_probs=112.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      -..||..++..|+.+-...|++.-..           ++.+|..|.++|..|+..|+.++++.|++.|++++..++..+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-----------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~Y   80 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-----------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLY   80 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-----------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccc
Confidence            45789999999999999999987554           8899999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHh
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG  233 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~  233 (424)
                      ||||+|+..|+.++.+.|++.|+.+...+.-|+|+-..|+--    |+.+++..+-.
T Consensus        81 TpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFV----G~H~CV~iINN  133 (396)
T KOG1710|consen   81 TPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFV----GHHECVAIINN  133 (396)
T ss_pred             cHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHh----cchHHHHHHhc
Confidence            999999999999999999999999999999999999999887    88888876643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=7.7e-13  Score=128.49  Aligned_cols=105  Identities=22%  Similarity=0.105  Sum_probs=96.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcC
Q 014436          282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR  361 (424)
Q Consensus       282 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  361 (424)
                      ..|+.|+..|+.+.++.|++.|+++ +.+|..|+||||+|+.+|+.+++++|++.   |++++.+|..|+||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~---Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEF---GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCC
Confidence            4688899999999999999999986 78899999999999999999999999998   8999999999999999999999


Q ss_pred             Ccchhhhhcccc-------chhhhhhcCCCCchhhHH
Q 014436          362 PSEFNRYMSRTT-------HANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       362 ~~~~~~~LL~~~-------g~~~~~~~~~g~t~l~~a  391 (424)
                      +.+++++|+. +       |++.+..+..|++|+..+
T Consensus       160 ~~~iv~~Ll~-~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        160 FREVVQLLSR-HSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             cHHHHHHHHh-CCCcccccCCCCCccccCCCCccchh
Confidence            9999998887 5       889999999898887766

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=2.6e-13  Score=86.18  Aligned_cols=56  Identities=29%  Similarity=0.296  Sum_probs=32.1

Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHH
Q 014436          299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVF  357 (424)
Q Consensus       299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  357 (424)
                      |++.|+...+.+|..|.||||+|+..|+.+++++|++.   |++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~---g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN---GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC---T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC---cCCCCCCcCCCCCHHHhC
Confidence            56777444588999999999999999999999999976   999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=3.2e-12  Score=112.61  Aligned_cols=118  Identities=23%  Similarity=0.185  Sum_probs=102.9

Q ss_pred             HHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCc
Q 014436          145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD  224 (424)
Q Consensus       145 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~  224 (424)
                      |.-|+..|.+++|+.++..-.|.. ..+..|.|+||.|+-.|+.+||++|++.|+++|..|.+||||||+|+..    .+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS-qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC----Nn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS-QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC----NN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC-CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc----Cc
Confidence            456788899999999998877744 7788899999999999999999999999999999999999999999998    99


Q ss_pred             HHHHHHHHhhcCCcccccCCCCChHHHHHHh--cCChhHHHHHhh
Q 014436          225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY--HGKYWINDLLEI  267 (424)
Q Consensus       225 ~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~~  267 (424)
                      ..+++.|++.++..+-..-.++.|+..-+-.  .|...+..+|..
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999998877777888899887643  454557777753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.28  E-value=2.4e-11  Score=99.15  Aligned_cols=117  Identities=21%  Similarity=0.107  Sum_probs=94.5

Q ss_pred             ChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 014436          247 WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ  326 (424)
Q Consensus       247 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  326 (424)
                      ..||.-++..|+.+-..-|.......+..+. .|.++|..|+..|+.++++.|++.|+|++...+..+.||||+|+.+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDP-SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            4677778877777744444444444455554 889999999999999999999999999877777888999999999999


Q ss_pred             ccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhh
Q 014436          327 LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNR  367 (424)
Q Consensus       327 ~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~  367 (424)
                      .++...|++.   |+.+...|.-|+|+-.+|+.-|+.++|.
T Consensus        92 ~dvcrlllda---Ga~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   92 QDVCRLLLDA---GARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             chHHHHHHhc---cCccccccchhhhHHHHHHHhcchHHHH
Confidence            9999999987   8888888899999999999888887764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=4.2e-09  Score=98.32  Aligned_cols=85  Identities=21%  Similarity=0.142  Sum_probs=80.4

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      .+.+|..|+|+||+++..+..++++||+++|.++.......|+||||-|+.+|+.+++..|+.+|..+...|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            78999999999999999999999999999999988666668999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 014436          214 AAVMY  218 (424)
Q Consensus       214 ~a~~~  218 (424)
                      ..++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            98873

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=1.4e-09  Score=101.44  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=56.4

Q ss_pred             HHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccc
Q 014436          261 INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR  340 (424)
Q Consensus       261 ~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~  340 (424)
                      +..++.+.........+..|+++||+++..+..++++||+++|.+++-.-...|+||||-|+..|+.+++-.||++   |
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~---g  109 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK---G  109 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc---C
Confidence            4444444433333333336666666666666666666666666665322224566666666666666666666666   5


Q ss_pred             cccccccCCCCcHHHHHHhc
Q 014436          341 ILINEGDAKGNTPLHVFAAV  360 (424)
Q Consensus       341 ~~i~~~d~~g~t~L~~A~~~  360 (424)
                      ..+..+|++|.+||...++-
T Consensus       110 ~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  110 RSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             CceEEecccCCCHHHHHhhc
Confidence            66666666666666665553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.79  E-value=9.1e-09  Score=92.02  Aligned_cols=121  Identities=18%  Similarity=0.251  Sum_probs=107.2

Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 014436           28 KLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKF  107 (424)
Q Consensus        28 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~  107 (424)
                      .|..|+..+|+=-++....+|-+....+.+..+.||+|  +..|+.++++|+++..  .+..++..|..|.|+||.|+..
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a--~~tg~~eivkyildh~--p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDHG--PSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH--HhcCChHHHHHHHhcC--CHHHHHHHhhhhhHHHHHHHHh
Confidence            37889999987777777777777778888999999999  9999999999999862  3467888999999999999999


Q ss_pred             CcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc
Q 014436          108 GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE  163 (424)
Q Consensus       108 g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  163 (424)
                      ++-.+-++|++.|+.           +...|..|.||-..|-..|+.+.+.||-.+
T Consensus       945 ~~r~vc~~lvdagas-----------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGAS-----------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cchHHHHHHHhcchh-----------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999998           778999999999999999999999999643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.78  E-value=4.1e-09  Score=92.16  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=82.1

Q ss_pred             cCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhH
Q 014436          311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHI  390 (424)
Q Consensus       311 ~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~  390 (424)
                      +.++...+++|++.|++..++.+.-.   |.|++.+|.+.+|+||+|+.-|+.+++++||+..+.+++.+|..|+|||+=
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~---g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ---GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh---cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34556789999999999999888776   999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCchhhHHHHHH
Q 014436          391 MKYGYPELLVINLSI  405 (424)
Q Consensus       391 a~~~~~~~~~~~~~~  405 (424)
                      |+ .++|..++++..
T Consensus       580 A~-~F~h~~v~k~L~  593 (622)
T KOG0506|consen  580 AK-HFKHKEVVKLLE  593 (622)
T ss_pred             hH-hcCcHHHHHHHH
Confidence            87 579999887443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.77  E-value=1.2e-08  Score=54.80  Aligned_cols=28  Identities=36%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCCCC
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTSLS  202 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  202 (424)
                      |+||||+|++.|+.+++++|+++|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.75  E-value=1.1e-08  Score=54.93  Aligned_cols=28  Identities=39%  Similarity=0.682  Sum_probs=26.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhc
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLA  123 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  123 (424)
                      +|+||||+||+.|+.++|++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.71  E-value=6.8e-09  Score=57.74  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=26.5

Q ss_pred             CCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436          349 KGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       349 ~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~  382 (424)
                      +|+||||+|+..++.+++++||. +|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47888888888888888888887 7888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.68  E-value=1.9e-08  Score=88.10  Aligned_cols=95  Identities=26%  Similarity=0.240  Sum_probs=75.8

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      +.++..++.+|++.|+...++.+.-.|.+           ++..|.+.+|+||+|+..|+.+++++|++.-...+..+|+
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-----------~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR  571 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-----------LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR  571 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-----------ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhc
Confidence            34456778888888888888888877777           6778888888888888888888888888875555667888


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCC
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCT  199 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~  199 (424)
                      +|+|||.-|...++.+++++|-+.-.
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            88888888888888888888877653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=4.3e-08  Score=54.45  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=23.1

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEG  205 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  205 (424)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36777777777777777777777777776654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.65  E-value=1.6e-07  Score=82.88  Aligned_cols=87  Identities=22%  Similarity=0.211  Sum_probs=81.8

Q ss_pred             HHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCC
Q 014436          144 ALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG  223 (424)
Q Consensus       144 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~  223 (424)
                      -||.+++.|+.+..-.|+..|++.++.....|.||||.|++.|+..-+++|+-+|+|+...|.+|.||+.+|-..    |
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~----g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG----G  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc----C
Confidence            489999999999999999999999998899999999999999999999999999999999999999999999998    8


Q ss_pred             cHHHHHHHHhh
Q 014436          224 DHHAMRQLFGR  234 (424)
Q Consensus       224 ~~~~~~~Ll~~  234 (424)
                      +.++...|++.
T Consensus       212 H~~laeRl~e~  222 (669)
T KOG0818|consen  212 HHELAERLVEI  222 (669)
T ss_pred             chHHHHHHHHH
Confidence            88888877664

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.63  E-value=7.9e-08  Score=84.75  Aligned_cols=87  Identities=20%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             hHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcC
Q 014436          282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR  361 (424)
Q Consensus       282 t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  361 (424)
                      ..||..++.|+.+..-.|+..|++.+-.....|.||||.|++.|+..-++.|+-+   |+|++..|.+|+||+.+|-..|
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY---GAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY---GADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc---cCCCCCCCCCCCcHHHHHHhcC
Confidence            4577788888888888888888877444456688888888888887777777776   8888888888888888888888


Q ss_pred             Ccchhhhhcc
Q 014436          362 PSEFNRYMSR  371 (424)
Q Consensus       362 ~~~~~~~LL~  371 (424)
                      +-++.+.|++
T Consensus       212 H~~laeRl~e  221 (669)
T KOG0818|consen  212 HHELAERLVE  221 (669)
T ss_pred             chHHHHHHHH
Confidence            7776665543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=7.5e-08  Score=86.32  Aligned_cols=119  Identities=23%  Similarity=0.176  Sum_probs=77.8

Q ss_pred             HHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCC-CCCCCCCCCCcHHH
Q 014436          102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD-YPYSANDYGKTPLY  180 (424)
Q Consensus       102 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~  180 (424)
                      ..|+..+++--++..-..|.+           +-.++.+..+.||+|+..|+-++|+|++++++. +....+..|.|+||
T Consensus       871 l~av~~~D~~klqE~h~~gg~-----------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lh  939 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGS-----------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALH  939 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCc-----------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHH
Confidence            344555554444444444444           345556666777777777777777777777664 22244566777777


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          181 MAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       181 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      -|+-.++..+.++|++.|+.+...|..|.||-..|.+.    +..++..+|-.+.
T Consensus       940 kaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa----~d~dlaayle~rq  990 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQA----GDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhc----CCchHHHHHhhhh
Confidence            77777777777777777777777777777777777776    7777777665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.41  E-value=3.8e-07  Score=82.13  Aligned_cols=88  Identities=18%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             hHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHH
Q 014436           68 CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD  147 (424)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~  147 (424)
                      +...++..+-+|+......+..-..-+.+|+|+||+||..|+..+.++|+-+|.+           +..+|..|+|+|.|
T Consensus       632 ~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-----------v~~rda~g~t~l~y  700 (749)
T KOG0705|consen  632 VAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-----------VMARDAHGRTALFY  700 (749)
T ss_pred             HHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-----------ceecccCCchhhhh
Confidence            4555555555555543333333333455667777777777777777777777777           55677777777777


Q ss_pred             HHhCCCHHHHHHHhhcCCC
Q 014436          148 AMFPGNMEVVKILTREDPD  166 (424)
Q Consensus       148 A~~~~~~~~v~~Ll~~~~~  166 (424)
                      |-..|.-+|+..|+++|..
T Consensus       701 ar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             HhhcccHHHHHHHHHcCCC
Confidence            7777777777777777643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=4.7e-07  Score=85.75  Aligned_cols=136  Identities=14%  Similarity=0.091  Sum_probs=103.8

Q ss_pred             ccCCCHHHHHHHHcCCCchhHHHHHHH----HHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCC
Q 014436           22 QSQTDPKLLKAAADGNAEPFKDMAREV----IESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKG   97 (424)
Q Consensus        22 ~~~~~~~l~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g   97 (424)
                      .+..+..+..|+.+||...|+..++..    .+.+..|.-|.++|+.|  +.+.+.++.++|++.    +.       .-
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~~----~~-------~~   88 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLDT----SS-------EE   88 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhcC----cc-------cc
Confidence            345556789999999999999999943    34558888999999999  999999999999986    21       11


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      ..+|.+|+..|..+.|+.++.+.......... ...-...-..+.|||..||..+++||++.|+++|..+....
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~-~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERS-GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccc-cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            56789999999999999999987654211110 00001222456799999999999999999999999876433

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=6.1e-07  Score=80.26  Aligned_cols=88  Identities=19%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             HHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcC
Q 014436          283 ALHLAAGRGHARTVETILS-LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR  361 (424)
Q Consensus       283 ~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  361 (424)
                      |+|.++.....+-+...+. .-...+..+|..|.||||+|+..|+.+.++.|+..   ++++..+|+.|++|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHcC
Confidence            4666666655544444322 22233466677777777777777777777777776   7777777777777777777777


Q ss_pred             Ccchhhhhcccc
Q 014436          362 PSEFNRYMSRTT  373 (424)
Q Consensus       362 ~~~~~~~LL~~~  373 (424)
                      +.+++..+|..+
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            777777777643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=1.1e-06  Score=78.63  Aligned_cols=90  Identities=24%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      -|+|.++.....+-...++......         .++..|..|.||||.|+..|+.+.++.|+..++++. .+|..|++|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~---------~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSL---------VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhc---------eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccccccH
Confidence            4699998888776555544433221         177889999999999999999999999999999976 788999999


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 014436          179 LYMAAESESSDMVLTLLENC  198 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~~  198 (424)
                      ||.|+..|+.+++..++.+.
T Consensus        92 L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHh
Confidence            99999999999988888764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.34  E-value=4.5e-06  Score=79.36  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh
Q 014436           58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV  137 (424)
Q Consensus        58 g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~  137 (424)
                      +.--.-.|  ++.|+...++..++......-.+|++|.-|+++|+.|+.+.+.+++++|++++...              
T Consensus        25 ~e~~fL~a--~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------------   88 (822)
T KOG3609|consen   25 GEKGFLLA--HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------------   88 (822)
T ss_pred             hhHHHHHH--HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------------
Confidence            33445567  99999999999999866655668999999999999999999999999999987541              


Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHhhcCCCC---------CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCC
Q 014436          138 NNKKNTALHDAMFPGNMEVVKILTREDPDY---------PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH  203 (424)
Q Consensus       138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  203 (424)
                          ..+|.+|+..|..++|+.++.+....         +...-.-+.||+.+|+..++.||++.|++.|+.+..
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                46788899999999999999764332         112223478999999999999999999999987654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.25  E-value=3.8e-06  Score=75.92  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             HHHHHhCCCHHHHHHHhhcCCCC---CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcccc
Q 014436          145 LHDAMFPGNMEVVKILTREDPDY---PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDF  221 (424)
Q Consensus       145 L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~  221 (424)
                      |..|+...+...+-+|+.+|...   ....+.+|+|+||+|++.|+..+.++|+-+|+|+..+|..|.|+|.||-+.   
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a---  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA---  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc---
Confidence            45677777888888999987653   224455789999999999999999999999999999999999999999999   


Q ss_pred             CCcHHHHHHHHhhcCC
Q 014436          222 KGDHHAMRQLFGRKKS  237 (424)
Q Consensus       222 ~~~~~~~~~Ll~~~~~  237 (424)
                       +..+++..|++.+..
T Consensus       705 -~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  705 -GSQECIDVLLQYGCP  719 (749)
T ss_pred             -ccHHHHHHHHHcCCC
Confidence             999999999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.01  E-value=1.4e-05  Score=68.64  Aligned_cols=72  Identities=24%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCc
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKT  177 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  177 (424)
                      .--|+.||+.|+.+.|++|++.|.+           +|..|....+||.+|+..|+.++|++|+++|+-.. ....+|..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-----------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~R  104 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-----------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDR  104 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-----------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcch
Confidence            3458999999999999999999988           88899999999999999999999999999999754 44455665


Q ss_pred             HHHH
Q 014436          178 PLYM  181 (424)
Q Consensus       178 ~L~~  181 (424)
                      ++.-
T Consensus       105 C~Yg  108 (516)
T KOG0511|consen  105 CHYG  108 (516)
T ss_pred             hhhh
Confidence            5443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.00  E-value=5e-06  Score=81.21  Aligned_cols=86  Identities=22%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436          312 NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       312 ~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a  391 (424)
                      ..|.|++|.|+..+..-++++|++.   |+++|.+|..|+||||.+...|+...+..|++ .|++.++.+..|++|+++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHH
Confidence            4578999999999999999999998   88899999999999999999999999977777 8999999999999999999


Q ss_pred             hhcCchhhHHH
Q 014436          392 KYGYPELLVIN  402 (424)
Q Consensus       392 ~~~~~~~~~~~  402 (424)
                      ..- .+.+...
T Consensus       730 ~~~-~~~d~~~  739 (785)
T KOG0521|consen  730 MEA-ANADIVL  739 (785)
T ss_pred             hhh-ccccHHH
Confidence            655 4444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.98  E-value=1.3e-05  Score=78.43  Aligned_cols=78  Identities=26%  Similarity=0.320  Sum_probs=59.7

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                      .|.|+||.|+..+..-++++|+++|++++ ..+..|.||+|.+...|+...+..++++|++.+..+..|.+++++|...
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            45677787777777777777777777755 6777777788877777777777777777777777777777777777654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.89  E-value=2.9e-05  Score=60.26  Aligned_cols=72  Identities=22%  Similarity=0.173  Sum_probs=62.3

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG  205 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  205 (424)
                      |+.+|..|+|++++|+..|+.+.+.||+.+|....-..+..|.+++.+|-+.|..+++..|.++..+-+..+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            788999999999999999999999999999954455888899999999999999999999999865544433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.85  E-value=3.1e-05  Score=60.06  Aligned_cols=69  Identities=23%  Similarity=0.177  Sum_probs=61.3

Q ss_pred             hhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCC
Q 014436           88 ALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD  166 (424)
Q Consensus        88 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  166 (424)
                      .++|.+|..|+|+++.|+..|..+.+.||+..|...          +...|..|.+++..|-+.|..+++..|.+...+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~----------vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF----------VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc----------ccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            457889999999999999999999999999999432          678889999999999999999999999987544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.73  E-value=0.00016  Score=62.32  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             cHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       143 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      --|..||+.|+.+.|++|++.|.+++ ..|....+||.+|+..|+.++|++|+++|+--.....+|.-++.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            34789999999999999999999987 88999999999999999999999999999754433345555533

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.66  E-value=5.4e-05  Score=73.91  Aligned_cols=128  Identities=21%  Similarity=0.106  Sum_probs=95.2

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHh-chhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP  168 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  168 (424)
                      .......|.+.+|+++..++.-.++.+++- +..           -...|.+|.-.+|. |..++++.+-+++.....-.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-----------~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai  634 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-----------DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI  634 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-----------chhhcccCCChhhH-hhhcCCceeEEEEeeccccc
Confidence            345667899999999999999999999985 433           33556677777777 44566777766665543334


Q ss_pred             CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHccccCCcHHHHHHHHh
Q 014436          169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLS------HEGPNGKTALHAAVMYFDFKGDHHAMRQLFG  233 (424)
Q Consensus       169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~  233 (424)
                      ...|..|+||||+|..+|+..++..|++.|++..      -....|.|+-..|...    ++..+..+|-+
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~----g~~gia~~lse  701 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN----GHKGIAGYLSE  701 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc----cccchHHHHhh
Confidence            4789999999999999999999999998886543      3455688888888776    66666655544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.64  E-value=6.3e-05  Score=73.46  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=88.5

Q ss_pred             cccccCCCchHHHHHHhcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCC
Q 014436          273 NIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGN  351 (424)
Q Consensus       273 ~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~  351 (424)
                      .......|.+.+|.++..++.-+++.+++. +... ...|..|...+|+++..+. +..-.++..  .+..++.+|..|+
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca~lg~-ewA~ll~~~--~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCAALGY-EWAFLPISA--DGVAIDIRDRNGW  642 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhhhcCC-ceeEEEEee--cccccccccCCCC
Confidence            334445788999999999999999999986 4443 5678889999999655544 444444433  2888999999999


Q ss_pred             cHHHHHHhcCCcchhhhhccccchhhh------hhcCCCCchhhHHh
Q 014436          352 TPLHVFAAVRPSEFNRYMSRTTHANYQ------AVNDQNVSVGHIMK  392 (424)
Q Consensus       352 t~L~~A~~~~~~~~~~~LL~~~g~~~~------~~~~~g~t~l~~a~  392 (424)
                      ||||+|+.+|+..++..|.. -|++..      ..+-.|.|+..+|.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~  688 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLAR  688 (975)
T ss_pred             cccchHhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhh
Confidence            99999999999999998886 455433      33445999999986

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.93  E-value=0.00075  Score=60.55  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             CccchHHhhhCCccc---cccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          326 QLQDLKPLLRNPFAR---ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       326 ~~~~~~~ll~~~~~~---~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      -...+++|.+....|   ......+..--|+||+|+..|..+++.+||+ .|+|+..+|..|+||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            355667777764331   1222334446699999999999999999999 68999999999999999986

>smart00248 ANK ankyrin repeats

Probab=96.74  E-value=0.0033  Score=32.84  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=13.5

Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.73  E-value=0.0025  Score=33.32  Aligned_cols=27  Identities=41%  Similarity=0.757  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchh
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKL  122 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~  122 (424)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            378999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.62  E-value=0.0041  Score=56.04  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             CCHHHHHHHhhcCCCCCCC-----CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          152 GNMEVVKILTREDPDYPYS-----ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       152 ~~~~~v~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .-.+.+++|.+.+.+.++.     .+.--.|+||+|+.+|..++|.+|++.|+|+..+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3467788888877665322     2334579999999999999999999999999999999999998875

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.42  E-value=0.031  Score=43.85  Aligned_cols=45  Identities=22%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHH
Q 014436          178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF  232 (424)
Q Consensus       178 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll  232 (424)
                      -|.+|+..|-...+...+++|.+++.      ++|..|+.+    .+..++.+++
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y----nhRkIL~yfi  190 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY----NHRKILDYFI  190 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh----hHHHHHHHhh
Confidence            34556666666666666666655442      556666666    5666655554

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.27  E-value=0.027  Score=44.20  Aligned_cols=35  Identities=11%  Similarity=-0.013  Sum_probs=17.0

Q ss_pred             CcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHH
Q 014436          223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL  264 (424)
Q Consensus       223 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  264 (424)
                      |-...+...+..+++. +.      +.|..|+..++-.+..+
T Consensus       154 gll~F~letlkygg~~-~~------~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  154 GLLPFVLETLKYGGNV-DI------IVLSQAVKYNHRKILDY  188 (192)
T ss_pred             CCHHHHHHHHHcCCcc-cH------HHHHHHHHhhHHHHHHH
Confidence            5555555555555442 22      34555555554444433

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.22  E-value=0.051  Score=44.06  Aligned_cols=115  Identities=15%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCC----CCCCCCCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDP----DYPYSANDY  174 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~  174 (424)
                      -.|.-|+...+.+-+.-++....+.                  .+++.+++.++..+++.+|+.+-.    ++.  .-..
T Consensus       155 isledAV~AsN~~~i~~~VtdKkdA------------------~~Am~~si~~~K~dva~~lls~f~ft~~dv~--~~~~  214 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKDA------------------HQAMWLSIGNAKEDVALYLLSKFNFTKQDVA--SMEK  214 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHHH------------------HHHHHHHhcccHHHHHHHHHhhcceecchhh--hcCc
Confidence            3467788888887777776654432                  378889999999999999997622    211  1111


Q ss_pred             CCcHHHHHHhc--CChHHHHHHHHhC-CCCCC---CCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          175 GKTPLYMAAES--ESSDMVLTLLENC-TSLSH---EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       175 g~t~L~~A~~~--~~~~~v~~Ll~~~-~~~~~---~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      +.--+-++...  .+..++++++++| ++++.   +-..|.|.|..|+.+    ++.+++..|+..|+.
T Consensus       215 ~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky----~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  215 ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKY----KNSEMIAFLLKYGAI  279 (284)
T ss_pred             chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhc----CcHHHHHHHHHcCcc
Confidence            33345555543  4567889999998 66663   456799999999999    999999999988864

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.70  E-value=0.35  Score=39.45  Aligned_cols=95  Identities=13%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHH--hCCCHHHHHHHhhcCCCC---CCCCC
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM--FPGNMEVVKILTREDPDY---PYSAN  172 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~---~~~~~  172 (424)
                      .+++.+|+.++..+++-+|+++-......      ++.+..  +.--+.++.  ...+..++++++.+|--.   .+..-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~d------v~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~  251 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQD------VASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKV  251 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecch------hhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhcc
Confidence            57889999999999999999875432110      011111  222344444  335688999999997532   22334


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                      ..|.|-|.-|+++++.+++..|+++|+-
T Consensus       252 NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  252 NSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4699999999999999999999999973

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.60  E-value=0.26  Score=33.23  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRED  164 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  164 (424)
                      ..+..|+..|+.|+++.+++.+...                  ...+..|+..-+.+++++|+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~------------------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD------------------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH------------------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            4578888888888888888665321                  25678888888888888888763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=90.96  E-value=7.7  Score=34.75  Aligned_cols=153  Identities=10%  Similarity=0.064  Sum_probs=82.8

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHH---HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhh-hhhccCCCc
Q 014436           24 QTDPKLLKAAADGNAEPFKDMARE---VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALL-IQVNAKGDT   99 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~t   99 (424)
                      .+.-.|..+...++.+....+++.   .......+..|...+.-+  ...+..+-...+++.+.  +... -..+..|.-
T Consensus        20 ~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~--l~~~~~~~~~~i~~~~~--~~~~~l~~~~~g~~   95 (322)
T cd07920          20 HGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKL--FEHGTEEQRLQLLEKIL--GHVVRLSLDMYGCR   95 (322)
T ss_pred             hhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHH--HHhCCHHHHHHHHHHHH--HHHHHHcccchhHH
Confidence            444458888888888888888885   222336777888888888  78777776666666543  1111 124555555


Q ss_pred             HHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc--CCCCCCCCCCCCCc
Q 014436          100 PLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKT  177 (424)
Q Consensus       100 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t  177 (424)
                      .+-.+...+..+....+++.-..        ...--..|..|...+..+......+..+.+++.  +.-.....+..|..
T Consensus        96 vlqkll~~~~~~~~~~i~~~l~~--------~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~  167 (322)
T cd07920          96 VIQKLLESISEEQISLLVKELRG--------HVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCR  167 (322)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHH--------CHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccH
Confidence            55555555544333333332110        000123556676666666665555555544432  11111233445555


Q ss_pred             HHHHHHhcCCh
Q 014436          178 PLYMAAESESS  188 (424)
Q Consensus       178 ~L~~A~~~~~~  188 (424)
                      .+.-.......
T Consensus       168 vvq~~l~~~~~  178 (322)
T cd07920         168 VIQRCLEHCSE  178 (322)
T ss_pred             HHHHHHHhCCH
Confidence            55555554433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.82  E-value=0.5  Score=31.83  Aligned_cols=48  Identities=15%  Similarity=0.057  Sum_probs=32.6

Q ss_pred             cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhc
Q 014436           60 TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA  120 (424)
Q Consensus        60 t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  120 (424)
                      ..+..|  +..|+.++++.+++..           .....++..|+...+.+++++|+++.
T Consensus         8 ~tl~~A--i~GGN~eII~~c~~~~-----------~~~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYA--IIGGNFEIINICLKKN-----------KPDNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHH--HhCCCHHHHHHHHHHh-----------ccHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            456677  7777777777776541           11145677788888888888887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-12
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		8e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
1uoh_A	226	Human Gankyrin Length = 226		1e-05
1uoh_A	226	Human Gankyrin Length = 226		4e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		8e-04
2eta_A	256	Crystal Structure Of The Ankyrin Repeat Domain Of T		8e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 117/263 (44%), Gaps = 28/263 (10%)
Query: 99  TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
           TPLHVA+  GH  IV+ L+ R                + N K  T LH A   G+ EV K
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASP-----------NVSNVKVETPLHMAARAGHTEVAK 64
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
            L +        A D  +TPL+ AA    ++MV  LLEN  + +     G T LH A   
Sbjct: 65  YLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR- 122
Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD 278
              +G    +  L  ++ S   +T + G+TP+H AA +GK  + +LL       N A K+
Sbjct: 123 ---EGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178
Query: 279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF---LHYAVASFQLQDLKPLLR 335
             +T LH+A    H   ++ +  L P       +  WN    LH A    Q++  + LL+
Sbjct: 179 -GLTPLHVAV---HHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Query: 336 NPFARILINEGDAKGNTPLHVFA 358
              +    N    +G TPLH+ A
Sbjct: 234 YGGSA---NAESVQGVTPLHLAA 253

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 117/270 (43%), Gaps = 27/270 (10%)
Query: 143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202
           T LH A F G++ +VK L +     P  +N   +TPL+MAA +  +++   LL+N   ++
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN 262
            +  + +T LH A      +  H  M +L     +   +    G TP+H AA  G +   
Sbjct: 75  AKAKDDQTPLHCAA-----RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG-HVET 128
Query: 263 DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
            L  +++ A+      +  T LH+AA  G  R  E +L           N     LH AV
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN-GLTPLHVAV 187
Query: 323 ASFQLQDLKPLLRNPFARILINEGDA------KGNTPLHVFAAVRPSEFNRYMSR-TTHA 375
               L            ++L+  G +       G TPLH+ A     E  R + +    A
Sbjct: 188 HHNNLD---------IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 376 NYQAVNDQNVSVGHI-MKYGYPELLVINLS 404
           N ++V  Q V+  H+  + G+ E++ + LS
Sbjct: 239 NAESV--QGVTPLHLAAQEGHAEMVALLLS 266

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 23  SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
           S+   +L++AA +GN +  KD+     +   +     T LH       AEN      +E+
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGH----KEV 52
Query: 83  LEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN 139
           +++  +    VNAK   G TPLH AA+ GH ++V++LI +       D   R        
Sbjct: 53  VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-------- 104
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
              T LH A   G+ EVVK+L  +  D   S +D G+TPL +A E   ++ V+ LLE
Sbjct: 105 ---TPLHHAAENGHKEVVKLLISKGADVNTSDSD-GRTPLDLARE-HGNEEVVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
           AA+ G+ D V+ LI+        D   R           T LH A   G+ EVVK+L  +
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGR-----------TPLHHAAENGHKEVVKLLISK 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
             D     +D G+TPL+ AAE+   ++V  L+     ++ +  +G+T LH A        
Sbjct: 60  GADVNAKDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG---- 114
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
            H  + +L   K + +  +D  G TP+  A  HG   +  LLE
Sbjct: 115 -HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 147 DAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP 206
           +A   GN + VK L     D   S +D G+TPL+ AAE+   ++V  L+     ++ +  
Sbjct: 10  EAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
           +G+T LH A         H  + +L   K + +   D  G TP+H+AA +G   +  LL 
Sbjct: 69  DGRTPLHHAAENG-----HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETI 299
                 N +D D + T L LA   G+   V+ +
Sbjct: 124 SKGADVNTSDSDGR-TPLDLAREHGNEEVVKLL 155

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+AA+ GH ++V++L++        D+  R           T LH A   G++EV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-----------TPLHLAARNGHLEV 50
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           VK+L     D   + +  G+TPL++AA +   ++V  LLE    ++ +  NG+T LH A
Sbjct: 51  VKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
           G+TPL++AA +   ++V  LLE    ++ +  NG+T LH A      +  H  + +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR 294
             + +   D+ G TP+H AA +G   +  LL       N  DK+ + T LHLAA  GH  
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLE 115
Query: 295 TVETIL 300
            V+ +L
Sbjct: 116 VVKLLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
           G TP+H AA +G   +  LL       N  DK+ + T LHLAA  GH   V+ +L    +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 60
Query: 306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358
                 N R   LH A  +  L+ +K LL    A   +N  D  G TPLH+ A
Sbjct: 61  VNAKDKNGR-TPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAA 109

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 25/177 (14%)
Query: 23  SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEI 82
           S+   +L++AA +GN +  KD+     +   +     T LH+      AEN   + V+ +
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLA-----AENGHKEVVKLL 56
Query: 83  LEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN 139
           L          NAK   G TPLH+AA+ GH ++V++L     L+Q  D  A+      ++
Sbjct: 57  LSQG----ADPNAKDSDGKTPLHLAAENGHKEVVKLL-----LSQGADPNAK------DS 101
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
              T LH A   G+ EVVK+L  +  D P +++  G+TPL +A E   ++ V+ LLE
Sbjct: 102 DGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLARE-HGNEEVVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
           AA+ G+ D V+ L++        D   +           T LH A   G+ EVVK+L  +
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGK-----------TPLHLAAENGHKEVVKLLLSQ 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
             D P + +  GKTPL++AAE+   ++V  LL      + +  +GKT LH A        
Sbjct: 60  GAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG---- 114
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
            H  + +L   + +    +D  G TP+  A  HG   +  LLE
Sbjct: 115 -HKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
           L  AAE+ + D V  LLEN   ++    +GKT LH A         H  + +L   + + 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG-----HKEVVKLLLSQGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
               D  G TP+H AA +G   +  LL       N  D D K T LHLAA  GH   V+ 
Sbjct: 63  PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKL 121
Query: 299 ILS 301
           +LS
Sbjct: 122 LLS 124

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           VNA+   G TPLH+AA FGH +IV VL     L    D  A+  + +      T LH A 
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVL-----LKNGADVNAKDSLGV------TPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
             G++E+V++L +   D   S + +G TPL++AA+    ++V  LL+N   ++ +   GK
Sbjct: 89  RRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 210 TALHAAV 216
           TA   ++
Sbjct: 148 TAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
           L +A   G  + V+IL     D   +A D+ G TPL++AA     ++V  LL+N   ++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADV--NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
           +   G T LH A      +  H  + ++  +  + +  +D +G+TP+H AA  G   I +
Sbjct: 76  KDSLGVTPLHLAA-----RRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           +L  +    N  DK  K TA  ++   G+    E +  L
Sbjct: 131 VLLKNGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 67  MCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDG 126
           + + AEN +   V+++LE   A     ++ G TPLH AA+ GH +IV++L+ +       
Sbjct: 8   LIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
           D   R           T LH A   G+ E+VK+L  +  D P + +  G+TPL+ AAE+ 
Sbjct: 67  DSDGR-----------TPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENG 114
Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAA 215
             ++V  LL      +    +G+T L  A
Sbjct: 115 HKEIVKLLLSKGADPNTSDSDGRTPLDLA 143

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
           AA+ G+ D V+ L++        D   R           T LH A   G+ E+VK+L  +
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGR-----------TPLHYAAENGHKEIVKLLLSK 59
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
             D P + +  G+TPL+ AAE+   ++V  LL      + +  +G+T LH A      + 
Sbjct: 60  GAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-----EN 113
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
            H  + +L   K +    +D  G TP+  A  HG   I  LLE
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
           GN + VK L     D P +++  G+TPL+ AAE+   ++V  LL      + +  +G+T 
Sbjct: 15  GNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 73
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
           LH A      +  H  + +L   K +     D  G TP+HYAA +G   I  LL      
Sbjct: 74  LHYAA-----ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 272 TNIADKDRKMTALHLAAGRGHARTVETI 299
            N +D D + T L LA   G+   V+ +
Sbjct: 129 PNTSDSDGR-TPLDLAREHGNEEIVKLL 155

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79  VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
           V+E+L   P+LL+Q +  G  PLH +  F   +I   L+ + +     D          +
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           +   T  H A   GN+EVVK L      PD     N  G T L++A   +  ++   L+E
Sbjct: 70  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
           N  S+  +    +  LH A      K     +  L G  KS +   D+ GWTP+ +A   
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLK----LIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
           G
Sbjct: 185 G 185

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
           N  LH A        V+ L    P      +  G+ PL+ +      E +  +L+ +EN 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
               +   +G T  H A       G+   ++ L+ R  K  L K+T+Q G T +H A   
Sbjct: 63  NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
           GK W  ++  L  +  +  I DK  ++  LH AA  G  + +E +  L        D + 
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
           W  L +A+A
Sbjct: 175 WTPLFHALA 183

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           +A G TPLH+AA +GH +IV VL+   K   D        +  ++   +T LH A   G+
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLL---KHGAD--------VNAIDIXGSTPLHLAALIGH 92
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
           +E+V++L +   D   + + +G TPL++AA     ++V  LL++   ++ +   GKTA
Sbjct: 93  LEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79  VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
           V+E+L   P+LL+Q +  G  PLH +  F   +I   L+ + +     D          +
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           +   T  H A   GN+EVVK L      PD     N  G T L++A   +  ++   L+E
Sbjct: 70  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
           N  S+  +    +  LH A       G    +  L G  KS +   D+ GWTP+ +A   
Sbjct: 129 NGASVRIKDKFNQIPLHRAASV----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
           G
Sbjct: 185 G 185

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
           N  LH A        V+ L    P      +  G+ PL+ +      E +  +L+ +EN 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
               +   +G T  H A       G+   ++ L+ R  K  L K+T+Q G T +H A   
Sbjct: 63  NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
           GK W  ++  L  +  +  I DK  ++  LH AA  G  + +E +  L        D + 
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
           W  L +A+A
Sbjct: 175 WTPLFHALA 183

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 79  VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN 138
           V+E+L   P+LL+Q +  G  PLH +  F   +I   L+ + +     D          +
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------D 69
Query: 139 NKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           +   T  H A   GN+EVVK L      PD     N  G T L++A   +  ++   L+E
Sbjct: 70  DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIE 128
Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
           N  S+  +    +  LH A       G    +  L G  KS +   D+ GWTP+ +A   
Sbjct: 129 NGASVRIKDKFNQIPLHRAASV----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 257 G 257
           G
Sbjct: 185 G 185

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE---SESSDMVLTLLENC 198
           N  LH A        V+ L    P      +  G+ PL+ +      E +  +L+ +EN 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 199 TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR--KKSLLKVTDQYGWTPIHYAAYH 256
               +   +G T  H A       G+   ++ L+ R  K  L K+T+Q G T +H A   
Sbjct: 63  NLDDYPDDSGWTPFHIACSV----GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAV-- 115
Query: 257 GKYW--INDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
           GK W  ++  L  +  +  I DK  ++  LH AA  G  + +E +  L        D + 
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 315 WNFLHYAVA 323
           W  L +A+A
Sbjct: 175 WTPLFHALA 183

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           +A G TPLH+AA +GH +IV VL+   K   D        +  ++   +T LH A   G+
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLL---KHGAD--------VNAIDIMGSTPLHLAALIGH 92
Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
           +E+V++L +   D   + + +G TPL++AA     ++V  LL++   ++ +   GKTA
Sbjct: 93  LEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           VNA+   GDTPLH+AA+ GH +IV VL+   K   D        +  ++   +T LH A 
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLL---KNGAD--------VNALDFSGSTPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSAND-YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
             G++E+V++L +   D   +A+D  G TPL++AA++   ++V  LL+    ++ +   G
Sbjct: 89  KRGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 209 KTALHAAV 216
           KTA   ++
Sbjct: 147 KTAFDISI 154

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
           L  AAE+ + D V  L+EN   ++    +G+T LH A      K  H  + +L   K + 
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-----KEGHKEIVKLLISKGAD 62
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
           +   D  G TP+HYAA  G   I  LL       N  D D + T LH AA  GH   V+ 
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKL 121
Query: 299 ILS 301
           ++S
Sbjct: 122 LIS 124

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 32/263 (12%)
Query: 28  KLLKAAADGNAEPFK---DMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILE 84
           KLL+A ADG+ E  +   +   E +E      +       + +CQ  + A     ++ L 
Sbjct: 14  KLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPA---QKRLA 70
Query: 85  ICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
             PA  + VN     G +PLHVAA  G +D++ +L     L    +  AR      N  +
Sbjct: 71  KVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLL-----LKHGANAGAR------NADQ 119
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
              LH A   G+ +VVK L   +   P   +  G TPL  A      ++V  LL++  S+
Sbjct: 120 AVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
           +     G TALH AV+       H  + +L     + ++V ++   T +  A  + K  I
Sbjct: 179 NASNNKGNTALHEAVIE-----KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--I 231
Query: 262 NDLLEIDQTAT----NIADKDRK 280
            +LL++  +      ++A+ DRK
Sbjct: 232 MELLQVVPSCVASLDDVAETDRK 254

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 14/121 (11%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+AAK GH +IV VL+   K   D        +   +N   T LH A   G++E+
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLL---KYGAD--------VNAWDNYGATPLHLAADNGHLEI 95
Query: 157 VKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           V++L +   D   +A DY G TPL++AA     ++V  LL+    ++ +   GKTA   +
Sbjct: 96  VEVLLKHGAD--VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 216 V 216
           +
Sbjct: 154 I 154

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 71  AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL---AQDGD 127
           AEN   + V+ +++   AL+   +A+G T LH+AAK GH ++V+ L+   ++    QD D
Sbjct: 52  AENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-D 109
Query: 128 EAARQM---------------------IRMVNNKKNTALHDAMFPGNMEVVKILTREDPD 166
                M                     I + +N++N  LH A F G +++ +IL     D
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 167 YPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217
             ++ N +G +PL++AA     D V+  L   + ++ +   G+T L  A +
Sbjct: 170 L-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
           +M +  K + LH A   G++++  +L +   +    + D  +TPL  AAE+   + V  L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYL 63
Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           ++    +  +   G T LH A      KG +  ++ L    +  +   D  GWTP+ +A 
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAK----KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
            +    +  LL    +  NI D +  +  LH AA  G     E +L+
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENI-CLHWAAFSGCVDIAEILLA 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 96  KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           +G TPLH+AA  GH +IV VL     L    D  AR      +    T LH A   G++E
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVL-----LKHGADVNAR------DTDGWTPLHLAADNGHLE 94
Query: 156 VVKILTREDPDYPYSAND-YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214
           +V++L +   D   +A D YG TPL++AA+    ++V  LL++   ++ +   GKTA   
Sbjct: 95  IVEVLLKYGAD--VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 215 AV 216
           ++
Sbjct: 153 SI 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
           L +A   G  + V+IL     D   + +D G TPL++AA     ++V  LL++   ++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
             +G T LH A         H  + ++  +  + +   D YG TP+H AA  G   I ++
Sbjct: 77  DTDGWTPLHLAA-----DNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           L       N  DK  K TA  ++   G+    E +  L
Sbjct: 132 LLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
           +  +D  GWTP+H AAY G   I ++L  +    N AD    +T LHLAA RGH   VE 
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEV 98
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
           +L    +     D+  +  LH A     L+ ++ LL+
Sbjct: 99  LLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK 134

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           +A G TPLH+AA  GH +IV VL+         D A    +R+           A+F G+
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA----------ALF-GH 92
Query: 154 MEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
           +E+V++L +   D   +AND  G TPL++AA     ++V  LL+N   ++ +   GKTA 
Sbjct: 93  LEIVEVLLKNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Query: 213 HAAV 216
             ++
Sbjct: 151 DISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE 163
           AA+ G  D VR+L+         D +             T LH A F G++E+V++L + 
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGW-----------TPLHLAAFNGHLEIVEVLLKN 69
Query: 164 DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
             D   + +  G TPL +AA     ++V  LL+N   ++     G T LH A M+     
Sbjct: 70  GADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----- 123
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
            H  + ++  +  + +   D++G T    +  +G     DL EI Q
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN---EDLAEILQ 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           D  GWTP+H AA++G   I ++L  +    N  D    MT L LAA  GH   VE +L  
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKN 102
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336
             +     D      LH A     L+ ++ LL+N
Sbjct: 103 GADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+AA  GH +IV VL+      ++G +     +  V+    T LH A   G++E+
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLL------RNGAD-----VNAVDTNGTTPLHLAASLGHLEI 83
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
           V++L +   D   + +  G TPLY+AA     ++V  LL++   ++ +   GKTA   ++
Sbjct: 84  VEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
           L +A   G  + V+IL     D   + + YG+TPL+MAA     ++V  LL N   ++  
Sbjct: 6   LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
             NG T LH A         H  + ++  +  + +   D  G TP++ AAY G   I ++
Sbjct: 65  DTNGTTPLHLAASL-----GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
Query: 265 LEIDQTATNIADK 277
           L       N  DK
Sbjct: 120 LLKHGADVNAQDK 132

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+    GH +I+ VL+  A      D++             T LH A + G++E+
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW-----------TPLHLAAYRGHLEI 95
Query: 157 VKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           V++L +   D   +A DY G TPL++AAE    ++V  LL+    ++ +   GKTA   +
Sbjct: 96  VEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 216 V 216
           +
Sbjct: 154 I 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
            +D GK  L  AA +   D V  L+ N   ++     G T LH  V        H  + +
Sbjct: 11  GSDLGK-KLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVV-----NNGHLEIIE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
           +  +  + +  +D+ GWTP+H AAY G   I ++L       N  D  +  T LHLAA  
Sbjct: 65  VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-QGYTPLHLAAED 123
Query: 291 GHARTVETILSLAPEC 306
           GH   VE +L    + 
Sbjct: 124 GHLEIVEVLLKYGADV 139

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 46/198 (23%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
           SD+ R L++ A+  QD DE    M     +   +N   T LH A + G++E+V++L +  
Sbjct: 12  SDLGRKLLEAARAGQD-DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD 224
            D   S + +G TPL++AA     ++V  LL+N                          D
Sbjct: 71  ADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGA------------------------D 105
Query: 225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTAL 284
            +AM              D  G TP+H AA  G   I ++L       N  DK  K TA 
Sbjct: 106 VNAM--------------DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK-TAF 150
Query: 285 HLAAGRGHARTVETILSL 302
            ++   G+    E +  L
Sbjct: 151 DISIDNGNEDLAEILQKL 168

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE 204
           L +A   G  + V+IL     D   + +D GKTPL++AA     ++V  LL++   ++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
              G T LH A +Y      H  + ++  +  + +  TD YG+TP+H AA  G   I ++
Sbjct: 77  DKMGDTPLHLAALY-----GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           L       N  DK  K TA  ++   G+    E +  L
Sbjct: 132 LLKYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+AA  GH +IV VL     L    D  A  +  +      T LH A   G++E+
Sbjct: 47  GYTPLHLAASNGHLEIVEVL-----LKNGADVNASDLTGI------TPLHLAAATGHLEI 95
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
           V++L +   D     ND G TPL++AA+    ++V  LL++   ++ +   GKTA
Sbjct: 96  VEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
           SD+ + L++ A+  QD DE    M     +   +N   T LH A   G++E+V++L +  
Sbjct: 12  SDLGKKLLEAARAGQD-DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 165 PDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKG 223
            D   +A+D  G TPL++AA +   ++V  LL++   ++    +G T LH A  Y     
Sbjct: 71  ADV--NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG---- 124
Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
            H  + ++  +  + +   D++G T    +  +G   + ++L+
Sbjct: 125 -HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
           +  TD  G+TP+H AA +G   I ++L  +    N +D    +T LHLAA  GH   VE 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL-TGITPLHLAAATGHLEIVEV 98
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
           +L    +     DN     LH A     L+ ++ LL+
Sbjct: 99  LLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           VNAK   G TPLH+AA+ GH +IV VL+   K   D        +   +    T LH A 
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGAD--------VNAKDKDGYTPLHLAA 88
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
             G++E+V++L +   D      D G TPL++AA     ++V  LL+    ++ +   GK
Sbjct: 89  REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 147
Query: 210 TALHAAV 216
           TA   ++
Sbjct: 148 TAFDISI 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           D+ G+TP+H AA  G   I ++L       N  DKD   T LHLAA  GH   VE +L  
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 102
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLR 335
             +     D   +  LH A     L+ ++ LL+
Sbjct: 103 GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
            +D GK  L  AA +   D V  L+ N   ++     G T LH A  +      H  + +
Sbjct: 11  GSDLGK-KLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYW-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
           +  +  + +   D  G TP+H AA+ G   I ++L  +    N  D D  +T LHLAA R
Sbjct: 65  VLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-DNGITPLHLAANR 123
Query: 291 GHARTVETILSLAPEC 306
           GH   VE +L    + 
Sbjct: 124 GHLEIVEVLLKYGADV 139

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET 298
           +  TD  G TP+H AA +G+  I ++L  +    N +D    +T LHLAA  GH   VE 
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS-AGITPLHLAAYDGHLEIVEV 90
Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           +L    +     D   W  LH A  S QL+ ++ LL++      +N  DA G T   +
Sbjct: 91  LLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDI 144

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 17/208 (8%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           GDTPLH+A   G+   V  L++     Q G E     + + NN + T LH A+      V
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVN--LFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSV 61
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT--SLSHEGPN--GKTAL 212
           V++L       P + + +G+T  ++A E  S   +  LL++    +L  E  N  G TAL
Sbjct: 62  VRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT 272
           H AV           ++ L  R   +  V  + G +P+ +A  +    +  LL +   A 
Sbjct: 121 HVAV----NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL-LQHGAN 175
Query: 273 NIADKDRKMTALHLAAGRGHARTVETIL 300
             A      +ALH A+GRG    V T++
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV 203

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           VNAK   G TPLH+AA+ GH +IV VL+   K   D        +   +    T LH A 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGAD--------VNAKDKDGYTPLHLAA 76
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
             G++E+V++L +   D      D G TPL++AA     ++V  LL+    ++ +   GK
Sbjct: 77  REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 210 TALHAAV 216
           T    A+
Sbjct: 136 TPFDLAI 142

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           D+ G+TP+H AA  G   I ++L       N  DKD   T LHLAA  GH   VE +L  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 90
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTP 353
             +     D   +  LH A     L+ ++ LL+   A   +N  D  G TP
Sbjct: 91  GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTP 137

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G TPLH+AA+ GH ++V++L++        D+  R           T LH A   G++EV
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR-----------TPLHLAARNGHLEV 50
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           VK+L     D   + +  G+TPL++AA +   ++V  LLE
Sbjct: 51  VKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
           G+TPL++AA +   ++V  LLE    ++ +  NG+T LH A      +  H  + +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLE 56
Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
             + +   D+ G TP+H AA +G   +  LL
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
           NG+T LH A      +  H  + +L     + +   D+ G TP+H AA +G   +  LL 
Sbjct: 1   NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETIL 300
                 N  DK+ + T LHLAA  GH   V+ +L
Sbjct: 56  EAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLL 88

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           VNAK   G TPLH+AA+ GH +IV VL+            A   +   +    T LH A 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLL-----------KAGADVNAKDKDGYTPLHLAA 76
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
             G++E+V++L +   D      D G TPL++AA     ++V  LL+    ++ +   GK
Sbjct: 77  REGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 210 TALHAAV 216
           T    A+
Sbjct: 136 TPFDLAI 142

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           D+ G+TP+H AA  G   I ++L       N  DKD   T LHLAA  GH   VE +L  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKA 90
Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTP 353
             +     D   +  LH A     L+ ++ LL+   A   +N  D  G TP
Sbjct: 91  GADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTP 137

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 66  IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD 125
           ++C  A +   + ++E +    +L  + +    T LH A   GH++IV  L+       D
Sbjct: 9   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185
            D+A             + LH A   G  E+VK L  +      + N  G TPL+ AA  
Sbjct: 69  KDDAGW-----------SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASK 116
Query: 186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQY 245
              ++ + LLE   +   +     TA+H A    + K     M  +    K+   + D  
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK-----MIHILLYYKASTNIQDTE 171
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
           G TP+H A    +     LL     +  I +K+ K T L +A G
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK-TPLQVAKG 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
           + G +E +K     D       +   +T L+ A  +  +++V  LL+    ++ +   G 
Sbjct: 15  YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
           + LH A       G    ++ L G K + +   +Q G TP+HYAA   ++ I  +L ++ 
Sbjct: 75  SPLHIAA----SAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVML-LEG 128
Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
            A   A    + TA+H AA +G+ + +  +L                   Y  AS  +QD
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILL-------------------YYKASTNIQD 169
Query: 330 LKPLLRNPFARILINEGDAKGNTPLHV 356
                              +GNTPLH+
Sbjct: 170 ------------------TEGNTPLHL 178

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 18/224 (8%)
Query: 66  IMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQD 125
           ++C  A +   + ++E +    +L  + +    T LH A   GH++IV  L+       D
Sbjct: 10  MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185
            D+A             + LH A   G  E+VK L  +      + N  G TPL+ AA  
Sbjct: 70  KDDAGW-----------SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASK 117
Query: 186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQY 245
              ++ + LLE   +   +     TA+H A    + K     M  +    K+   + D  
Sbjct: 118 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK-----MIHILLYYKASTNIQDTE 172
Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
           G TP+H A    +     LL     +  I +K+ K T L +A G
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK-TPLQVAKG 215

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
           + G +E +K     D       +   +T L+ A  +  +++V  LL+    ++ +   G 
Sbjct: 16  YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 75
Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
           + LH A       G    ++ L G K + +   +Q G TP+HYAA   ++ I  +L ++ 
Sbjct: 76  SPLHIAA----SAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVML-LEG 129
Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
            A   A    + TA+H AA +G+ + +  +L                   Y  AS  +QD
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILL-------------------YYKASTNIQD 170
Query: 330 LKPLLRNPFARILINEGDAKGNTPLHV 356
                              +GNTPLH+
Sbjct: 171 ------------------TEGNTPLHL 179

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
           I + N++ +  L +A   G++E VK L                TPL+ AA      +V  
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
           LL++   +  +   G   LH A  Y      H+ + +L  +  +++ V D + +TP+H A
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 254 AYHGKYWINDLL 265
           A  GKY I  LL
Sbjct: 120 AAKGKYEICKLL 131

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
           M N++ +  L +A   G++E VK L                TPL+ AA      +V  LL
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255
           ++   +  +   G   LH A  Y      H+ + +L  +  +++ V D + +TP+H AA 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 256 HGKYWINDLL 265
            GKY I  LL
Sbjct: 118 KGKYEICKLL 127

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 65  NIM-CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA 123
           NIM C  A +     ++E +    +L  + +    T LH A   GH++IV  L+      
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 124 QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183
            D D+A             + LH A   G  E+VK L  +   +  + N  G TPL+ AA
Sbjct: 67  NDKDDAGW-----------SPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAA 114
Query: 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
                ++ + LLE   +   +     TA+H A    + K     M  +    K+   + D
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-----MVHILLFYKASTNIQD 169
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
             G TP+H A    +      L     +  I +K+ K T L +A G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKG 214

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 34/184 (18%)
Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRA-- 120
            +  + + A    TK V+EIL+     + +V+ +G+TPL++A      +I + LIDR   
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 121 --------------KLAQDGDEAARQMIRMVN---NKKNTALHDAMFP----GNMEVVKI 159
                           AQ   E    M++      NK N    +A+ P    G+++ VK+
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 160 L---TREDPDYPYSANDYGKTPLYMAAESESS-----DMVLTLLENCTSLSHEGPNGKTA 211
           L    RED D+    ND+G T L  A           D+V  L+EN    S +  +G+TA
Sbjct: 125 LLEDGREDIDFQ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181
Query: 212 LHAA 215
           +  A
Sbjct: 182 MDYA 185

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           V+  G TPLH+AA  GH +IV VL+   K   D D A             T LH A   G
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGF--------TPLHLAAMTG 91
Query: 153 NMEVVKILTREDPDYPYSANDY---GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
           ++E+V++L +    Y    N +   G TPL++AA+    ++V  LL+    ++ +   GK
Sbjct: 92  HLEIVEVLLK----YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 210 TALHAAV 216
           TA   ++
Sbjct: 148 TAFDISI 154

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
            +D GK  L  AA +   D V  L+ N   ++     G T LH A +       H  + +
Sbjct: 11  GSDLGK-KLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-----GHLEIVE 64
Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
           +  +  + +   D YG+TP+H AA  G   I ++L       N  D     T LHLAA  
Sbjct: 65  VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDM-TGSTPLHLAADE 123
Query: 291 GHARTVETIL 300
           GH   VE +L
Sbjct: 124 GHLEIVEVLL 133

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 65  NIM-CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA 123
           NIM C  A +     ++E +    +L  + +    T LH A   GH++IV  L+      
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 124 QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183
            D D+A             + LH A   G  E+VK L  +   +  + N  G TPL+ AA
Sbjct: 67  NDKDDAGW-----------SPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAA 114
Query: 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
                ++ + LLE   +   +     TA+H A    + K     M  +    K+   + D
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK-----MVHILLFYKASTNIQD 169
Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG 289
             G TP+H A    +      L     +  I +K+ K T L +A G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVAKG 214

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
           N++ +  L +A   G++E VK L                TPL+ AA      +V  LL++
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 198 CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
              +  +   G   LH A  Y      H+ + +L  +  +++ V D + +TP+H AA  G
Sbjct: 67  GADVHAKDKGGLVPLHNACSY-----GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 258 KYWINDLL 265
           KY I  LL
Sbjct: 122 KYEICKLL 129

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 40/196 (20%)
Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           Q+   GD+ LH+A       +   +I + K    GD A    +   NN + T LH A+  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVK----GDLA---FLNFQNNLQQTPLHLAVIT 55
Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
              E+ + L     D P   +  G TPL++A E      V  L ++CT+     P+    
Sbjct: 56  NQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH---- 105
Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
           LH                       S+LK T+  G T +H A+ HG   I +LL      
Sbjct: 106 LH-----------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 272 TNIADKDRKMTALHLA 287
            N  +     TALHLA
Sbjct: 143 VNAQEPCNGRTALHLA 158

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 40/192 (20%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           GD+ LH+A       +   +I + K    GD A    +   NN + T LH A+     E+
Sbjct: 5   GDSFLHLAIIHEEKALTMEVIRQVK----GDLA---FLNFQNNLQQTPLHLAVITNQPEI 57
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
            + L     D P   +  G TPL++A E      V  L ++CT+     P+    LH   
Sbjct: 58  AEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-----PH----LH--- 104
Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIAD 276
                               S+LK T+  G T +H A+ HG   I +LL       N  +
Sbjct: 105 --------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144
Query: 277 KDRKMTALHLAA 288
                TALHLA 
Sbjct: 145 PCNGRTALHLAV 156

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G+TPLH AAK GH++ V+ L     L++  D  AR      +   NT LH A   G+ E+
Sbjct: 9   GNTPLHNAAKNGHAEEVKKL-----LSKGADVNAR------SKDGNTPLHLAAKNGHAEI 57
Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
           VK+L  +  D    + D G TP ++A ++   ++V  L
Sbjct: 58  VKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKLL 94

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 145 LHDAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSH 203
           L +A   G  + V+ILT    D   +ANDY G TPL++AA     ++V  LL+N   ++ 
Sbjct: 18  LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 204 EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
            G  G+T LH A        DH  + ++  +  + +   D++G T    +  +G     D
Sbjct: 76  TGNTGRTPLHLAAW-----ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN---ED 127
Query: 264 LLEIDQ 269
           L EI Q
Sbjct: 128 LAEILQ 133

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           ++  G TPLH+AA+ GH +IV VL+   K   D        +   +N   T LH A   G
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLL---KYGAD--------VNAEDNFGITPLHLAAIRG 91
Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
           ++E+V++L +   D   + + +GKT   ++ ++ + D+
Sbjct: 92  HLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 128

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
           +R  + +  T LH A     +++VK    +         D   TPL+ A       MV+ 
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
           L++     S     G + +H A  +      H ++      K   + + DQ G TP+ +A
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQF-----GHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Query: 254 AYHGKYWIN--DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVD 311
           AY   + ++   LL     + N+ DK  K TALH A   G+     T++SL  E    VD
Sbjct: 150 AYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT----TVISLLLEAGANVD 204

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
           LL+Q    V+AK   G  PLH A  +GH ++  +L+                +  ++  +
Sbjct: 76  LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA-----------CVNAMDLWQ 124
Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE--------------- 186
            T LH+A     +EV  +L     D P   N +GK+ + MA   E               
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 187 -----------SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235
                         + L ++      SHE     TALH AV     K    A  +L  RK
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHE-----TALHCAVASLHPKRKQVA--ELLLRK 236
Query: 236 KSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART 295
            + +   ++   TP+H AA      + ++L       N  D     TALH AA  GH +T
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD-SLGQTALHRAALAGHLQT 295
Query: 296 VETILS 301
              +LS
Sbjct: 296 CRLLLS 301

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 110 SDIVRVLIDRAKLAQDGDEAARQM-----IRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
           SD+ + L++  +  QD DE    M     +  +++   T LH A   G++E+V++L +  
Sbjct: 12  SDLGKKLLEATRAGQD-DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
            D   S + +G+TPL++AA     ++V  LLE    ++ +   GKTA   ++
Sbjct: 71  ADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 26/197 (13%)
Query: 68  CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD 127
            ++ E+++ + + ++L     L   ++  G+T LH+AA+F  +D  + L+D    A   D
Sbjct: 22  IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQD 81
Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES 187
              R           T LH A+    M V +IL R       +    G TPL +AA    
Sbjct: 82  NTGR-----------TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 188 SDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD-----HHAMRQLFGRKKSLLKVT 242
             MV  L+     ++    +GKTALH A    + +       HHA R             
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD----------AQ 180
Query: 243 DQYGWTPIHYAAYHGKY 259
           D    TP+  AA  G Y
Sbjct: 181 DDKDETPLFLAAREGSY 197

>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The Trpv2 Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 26/148 (17%)
Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSAND------------YGKTPLYMAAESES 187
           + ++ALH A+   +++ VK+L     D    A              +G+ PL +AA ++ 
Sbjct: 89  QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 188 SDMVLTLLEN---CTSLSHEGPNGKTALHAAVMYFDFKGDHHA--------MRQLFGR-- 234
            D+V  LLEN     SL      G T LHA VM  D   ++ A        + Q+  R  
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208
Query: 235 -KKSLLKVTDQYGWTPIHYAAYHGKYWI 261
               L ++++  G TP+  AA  GK  I
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEI 236

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 99  TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
           TPLH+AA  GH++IV VL     L    D  A+ M++M      TALH A    + EVV+
Sbjct: 69  TPLHMAASEGHANIVEVL-----LKHGADVNAKDMLKM------TALHWATEHNHQEVVE 117
Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
           +L +   D  ++ + + KT   ++ ++ + D+
Sbjct: 118 LLIKYGADV-HTQSKFCKTAFDISIDNGNEDL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-29
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2etb_A	256	Transient receptor potential cation channel subfam	6e-28
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-26
2rfa_A	232	Transient receptor potential cation channel subfa	6e-26
2rfa_A	232	Transient receptor potential cation channel subfa	4e-15
2rfa_A	232	Transient receptor potential cation channel subfa	7e-15
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  142 bits (361), Expect = 3e-38
 Identities = 71/277 (25%), Positives = 116/277 (41%), Gaps = 33/277 (11%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L++           G TPLHVAAK+G   +  +L++R A                    
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------------PNAAGKN 178

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200
             T LH A+   N+++VK+L       P+S    G TPL++AA+    ++  +LL+   S
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
            + E   G T LH A      +  H  M  L   K++   + ++ G TP+H  A  G   
Sbjct: 238 ANAESVQGVTPLHLAA-----QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH 319
           + D+L I      +   +    T LH+A+  G+ + V+ +L    +         ++ LH
Sbjct: 293 VADVL-IKHGVMVDATTRMGY-TPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLH 349

Query: 320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
            A        +  LL+N       NE  + G TPL +
Sbjct: 350 QAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  142 bits (361), Expect = 3e-38
 Identities = 73/285 (25%), Positives = 112/285 (39%), Gaps = 33/285 (11%)

Query: 83  LEICPALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIR 135
           L I   LL +    N      +TPLH+AA+ GH+++ + L+   AK            + 
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK------------VN 74

Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
                  T LH A   G+  +VK+L   + + P  A   G TPL++AA     + VL LL
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALL 133

Query: 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255
           E   S +     G T LH A  Y         + +L   + +      + G TP+H A +
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKY-----GKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188

Query: 256 HGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
           H    I  LL + +    +    +   T LH+AA +       ++L            + 
Sbjct: 189 HNNLDIVKLL-LPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQG 245

Query: 315 WNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
              LH A      + +  LL     +   N G+  G TPLH   A
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLH-LVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 9e-38
 Identities = 77/272 (28%), Positives = 113/272 (41%), Gaps = 30/272 (11%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDA 148
                  G TPLHVA+  GH  IV+ L+ R A               + N K  T LH A
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS------------PNVSNVKVETPLHMA 54

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
              G+ EV K L +       +     +TPL+ AA    ++MV  LLEN  + +     G
Sbjct: 55  ARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113

Query: 209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEID 268
            T LH A         H         K++      + G+TP+H AA +GK  + +LL ++
Sbjct: 114 HTPLHIAARE-----GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL-LE 167

Query: 269 QTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQL 327
           + A  N A K+  +T LH+A    +   V+ +L              +  LH A    Q+
Sbjct: 168 RDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQV 225

Query: 328 QDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
           +  + LL+        N    +G TPLH  AA
Sbjct: 226 EVARSLLQY---GGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (353), Expect = 4e-37
 Identities = 62/277 (22%), Positives = 101/277 (36%), Gaps = 30/277 (10%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL++     NA    G TPLHVA    + DIV++L+ R                      
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------------PHSPAWN 211

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200
             T LH A     +EV + L +       + +  G TPL++AA+   ++MV  LL    +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
            +    +G T LH           H  +  +  +   ++  T + G+TP+H A+++G   
Sbjct: 271 GNLGNKSGLTPLHLVAQE-----GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH 319
           +   L +   A  N   K    + LH AA +GH   V  +L         V +     L 
Sbjct: 326 LVKFL-LQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLA 382

Query: 320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
            A     +     L         +   D    +    
Sbjct: 383 IAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  125 bits (317), Expect = 3e-32
 Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 31/244 (12%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL+      ++    G TPLH+AAK    ++ R L+                     + +
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS------------ANAESVQ 244

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200
             T LH A   G+ E+V +L  +  +     N  G TPL++ A+     +   L+++   
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
           +      G T LH A  Y      +  + +   + ++ +    + G++P+H AA  G   
Sbjct: 304 VDATTRMGYTPLHVASHY-----GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPE--CFELVDNRRWNF 317
           I  LL +   A  N    D   T L +A   G+    + +  +  E     + D  R +F
Sbjct: 359 IVTLL-LKNGASPNEVSSDGT-TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

Query: 318 LHYA 321
               
Sbjct: 417 PETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 3e-28
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 83  LEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMI 134
           +E+    L+Q     NA+   G TPLH+AA+ GH+++V +L+ + A              
Sbjct: 225 VEVA-RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------------G 271

Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
            + N    T LH     G++ V  +L +       +    G TPL++A+   +  +V  L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           L++   ++ +   G + LH A         H  +  L  +  +        G TP+  A 
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQ-----GHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385

Query: 255 YHGKYWINDLLE--IDQTA-TNIADKDRKMTALHLA 287
             G   + D+L+   D+T+   ++DK R M+     
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVSDKHR-MSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 83  LEICPALL---IQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
            E+   LL      N     G TPLH+ A+ GH  +  VLI                +  
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-----HGVM------VDA 306

Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
                 T LH A   GN+++VK L +   D   +    G +PL+ AA+   +D+V  LL+
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL---FGRKKSLLKVTDQYGWTPIHYA 253
           N  S +    +G T L  A      +  + ++  +      + S + V+D++  +     
Sbjct: 366 NGASPNEVSSDGTTPLAIAK-----RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

Query: 254 AYH 256
              
Sbjct: 421 DEI 423

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  135 bits (343), Expect = 4e-37
 Identities = 52/277 (18%), Positives = 81/277 (29%), Gaps = 25/277 (9%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           V   GDT LH+A    H   +  L+           A  + + + N+   TALH A   G
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF--------SAGHEYLDLQNDLGQTALHLAAILG 56

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
               V+ L          A   G T L++A    +      LL+   S   +  +     
Sbjct: 57  EASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 213 HAAVM---------YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
                                 +         +  L+  +  G TP+H A  H    +  
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 264 LLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
           LL  D  A  N  +     T LHLA     A  +E +L    +            L  A+
Sbjct: 176 LL-RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSAL 233

Query: 323 ASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                   + L  +        E      +P    + 
Sbjct: 234 LRPNPILARLLRAH---GAPEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (287), Expect = 4e-29
 Identities = 39/225 (17%), Positives = 68/225 (30%), Gaps = 20/225 (8%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L      V      G T LH+A +        VL+       +D  +      +     
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 141 KN--TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC 198
            +   A  D+      E              + N  G TPL++A   + ++MV  L +  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 199 TSLSHEGPN-GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
             L+   P  G+T LH AV          ++ +L  +  +        G TP+  A    
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEA-----QAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

Query: 258 KYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
              +  LL     A       D+  +    +     +   +    
Sbjct: 237 NPILARLL-RAHGAPEPEDGGDKL-SPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (275), Expect = 2e-27
 Identities = 50/261 (19%), Positives = 83/261 (31%), Gaps = 42/261 (16%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRV 115
           +T LH+        +    F++ +L    A    ++ +   G T LH+AA  G +  V  
Sbjct: 10  DTALHLA-----VIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 116 LIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL---------TREDP 165
           L    A             + +     +TALH A          +L            D 
Sbjct: 64  LYAAGAG------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 166 DYPYSANDYGKTP----LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDF 221
               S +    T        +  +  ++      +    L  E  +G T LH AV++   
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--- 168

Query: 222 KGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRK 280
             D   +R L      L K     G TP+H A       + +LL +   A         +
Sbjct: 169 -KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL-LKAGADPTARMYGGR 226

Query: 281 MTALHLAAGRGHARTVETILS 301
            T L  A  R +      + +
Sbjct: 227 -TPLGSALLRPNPILARLLRA 246

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 42/125 (33%)

Query: 238 LLKVTDQYGWTPIHYAAYHGKYWINDLL---EIDQTATNIADKDRKMTALHLAAGRGHAR 294
           +     + G T +H A  H      D L          ++ +   + TALHLAA  G A 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEAS 59

Query: 295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPL 354
           TVE + +                   A                     +   +  G+T L
Sbjct: 60  TVEKLYA-----------------AGA--------------------GVLVAERGGHTAL 82

Query: 355 HVFAA 359
           H  A 
Sbjct: 83  H-LAC 86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 20/84 (23%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL++      A+   G TPL  A    +  + R+L    A                    
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP------------EPEDGGD 257

Query: 141 KNTALHDAMFPGNMEVVKILTRED 164
           K +    +    + +        D
Sbjct: 258 KLSPCSSSGSDSDSDNRDEGDEYD 281

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  134 bits (339), Expect = 7e-36
 Identities = 66/310 (21%), Positives = 113/310 (36%), Gaps = 49/310 (15%)

Query: 74  ASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQD 125
           A +   E+++     LL       +A      TPLH+AA +    IV++L+   A     
Sbjct: 32  ARSGNEEKLMA----LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---- 83

Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES 185
                   +   +      LH+A   G+ EV ++L +       + + +  TPL+ AA  
Sbjct: 84  --------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASK 134

Query: 186 ESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY-------FDFKGD---HHAMRQLFGRK 235
              ++   LL +    +    +GK+A+  A          ++FKG      A      + 
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKV 194

Query: 236 KSLLK------VTDQYGWTPIHYAAYHGKYWINDLLE--IDQTA-TNIADKDRKMTALHL 286
           K  L          Q   T +H A          + E  + + A  N  +KD   T LH+
Sbjct: 195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM-TPLHV 253

Query: 287 AAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG 346
           AA R H   +E +     +    +D+     LH A  +  LQ  + LL         +  
Sbjct: 254 AAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSII 309

Query: 347 DAKGNTPLHV 356
             +G T   +
Sbjct: 310 SLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  130 bits (329), Expect = 2e-34
 Identities = 81/369 (21%), Positives = 139/369 (37%), Gaps = 87/369 (23%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTL--------QTRNTILHINIMCQDAENASTKFVE 80
           LL+AA  GN E       +++  L  L          ++T LH+         A+     
Sbjct: 28  LLEAARSGNEE-------KLMALLTPLNVNCHASDGRKSTPLHL---------AAGYNRV 71

Query: 81  EILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQ 132
            I++    LL+Q    V+AK   G  PLH A  +GH ++  +L+   A            
Sbjct: 72  RIVQ----LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC----------- 116

Query: 133 MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVL 192
            +  ++  + T LH+A     +EV  +L     D P   N +GK+ + MA   E  + + 
Sbjct: 117 -VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLT 174

Query: 193 TLLENCTS---------------LSHEGPN------GKTALHAAVMYFDFKGDHHAMRQL 231
              +  +                L+ E  N       +TALH AV     K     + +L
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK--RKQVAEL 232

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGR 290
             RK + +   ++   TP+H AA      + ++L     A  N  D   + TALH AA  
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQ-TALHRAALA 290

Query: 291 GHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKG 350
           GH +T   +LS   +   ++  + +            + ++ +L        +   D   
Sbjct: 291 GHLQTCRLLLSYGSDP-SIISLQGFTAAQMGN-----EAVQQILSE---STPMRTSD--V 339

Query: 351 NTPLHVFAA 359
           +  L   A+
Sbjct: 340 DYRLLE-AS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (276), Expect = 4e-27
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 57/298 (19%)

Query: 93  VNAKGD----TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDA 148
               G+      L  A       ++ +L        + +          + +K+T LH A
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTP-----LNVN------CHASDGRKSTPLHLA 65

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
                + +V++L +   D  ++ +  G  PL+ A      ++   LL++   ++      
Sbjct: 66  AGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL--- 265
            T LH A        +   +  L     +   + + +G + +  A               
Sbjct: 125 FTPLHEAASK-----NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179

Query: 266 -----------------EIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECF- 307
                             +     N        TALH A    H +  +       E   
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA-----ELLL 234

Query: 308 ------ELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                    +      LH A        ++ L ++      +N  D+ G T LH  AA
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALH-RAA 288

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 39/215 (18%)

Query: 47  EVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK 106
           E +         +++L        A  A    V++ L     +  +     +T LH A  
Sbjct: 171 ERLTYEFK---GHSLLQA------AREADLAKVKKTL-ALEIINFKQPQSHETALHCAVA 220

Query: 107 FGHS---DIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR 162
             H     +  +L+ + A             +   N    T LH A    + +V+++L +
Sbjct: 221 SLHPKRKQVAELLLRKGAN------------VNEKNKDFMTPLHVAAERAHNDVMEVLHK 268

Query: 163 EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK 222
                  + +  G+T L+ AA +        LL   +  S     G TA           
Sbjct: 269 HGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG------- 320

Query: 223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
             + A++Q+   + + ++ +D      +  A+  G
Sbjct: 321 --NEAVQQIL-SESTPMRTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 27/157 (17%)

Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY-WIND 263
           G  GK+AL  A        D  A             +T +Y    +  AA  G    +  
Sbjct: 1   GEFGKSALDLA--------DPSAK----------AVLTGEYKKDELLEAARSGNEEKLMA 42

Query: 264 LLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
           LL        + +D   K T LHLAAG    R V+ +L    +     D      LH A 
Sbjct: 43  LL-TPLNVNCHASDGR-KSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNAC 99

Query: 323 ASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
           +    +  + LL++      +N  D    TPLH  AA
Sbjct: 100 SYGHYEVTELLLKH---GACVNAMDLWQFTPLH-EAA 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  133 bits (336), Expect = 2e-35
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 51/281 (18%)

Query: 91  IQVNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALH 146
           +            +HVAA+ G +D VR LI+                  + N    TALH
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS------------PTIQNRFGCTALH 58

Query: 147 DAMFPGNMEVVKILTREDPDYPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEG 205
            A   G ++  K L           + + G+ P+++A  +  +D+V+ L+E         
Sbjct: 59  LACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGAKE----- 109

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN--D 263
             G+              D   + ++         V    G T +H+    G  ++    
Sbjct: 110 -RGQMPESLLNEC-----DEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEMIK 157

Query: 264 LLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPEC----FELVDNRRWNFL 318
           +L +   A     DK  + T L  A    +   ++ ++   P       +  + +  + L
Sbjct: 158 IL-VQLGASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
           H+A+           +      I +N  D +   PL+  + 
Sbjct: 216 HWAILINWEDVAMRFVEM---GIDVNMEDNEHTVPLY-LSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 1e-31
 Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 45/280 (16%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMIRMVNN 139
            LI+       +   G T LH+A KFG  D  + L           G             
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHG------------- 84

Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
                +H A+     ++V  L          A + G+ P  +  E +  ++         
Sbjct: 85  --QKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDEREVNEIGSHVKH 135

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
                   G+TALH  V       ++  M ++  +  +     D+   TP+  A      
Sbjct: 136 C------KGQTALHWCVGLGP---EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 260 WINDLLEIDQTATNIADKDRK----MTALHLAAGRGHARTVETILSLAPECFELVDNRRW 315
              DL+     + +    D       + LH A            + +  +   + DN   
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHT 245

Query: 316 NFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
             L+ +V +  +   K LL+     ++       G T L 
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (286), Expect = 2e-28
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 49/289 (16%)

Query: 89  LLIQVNAK-GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD 147
            L++   + G  P  +  +    ++  +     K                + K  TALH 
Sbjct: 102 ALVEGAKERGQMPESLLNECDEREVNEIGSH-VK----------------HCKGQTALHW 144

Query: 148 AMFPGN--MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG 205
            +  G   +E++KIL +     P + +   +TPL  A E  + + +  +++   S S   
Sbjct: 145 CVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203

Query: 206 PN-----GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
            +     G + LH A++      +   +   F      + + D     P++ +       
Sbjct: 204 LDYANKQGNSHLHWAILI-----NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL 258

Query: 261 INDLLEIDQTATNI-------------ADKDRKMTALHLAAGRGHARTVETILSLAPECF 307
           +   L + +T   +              D+   +  +  AA       ++ +     E  
Sbjct: 259 LTKEL-LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-V 316

Query: 308 ELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
               N                 +K +   P A   +            V
Sbjct: 317 VRSLNTGAGGAVKR-KKKAAPAVKRMKLAPSAP--VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 17/166 (10%), Positives = 48/166 (28%), Gaps = 23/166 (13%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
           N+ LH          A     E++        ++    VN +      PL+++ +     
Sbjct: 212 NSHLHW---------AILINWEDVAM----RFVEMGIDVNMEDNEHTVPLYLSVRAAMVL 258

Query: 112 IVRVLIDRAKLAQDGDEAAR--QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169
           + + L+ +  +             +          +  A  P   EV+++L  +  +   
Sbjct: 259 LTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VV 317

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
            + + G        +  +  +    L     +     +   +   +
Sbjct: 318 RSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  129 bits (326), Expect = 1e-34
 Identities = 59/288 (20%), Positives = 97/288 (33%), Gaps = 50/288 (17%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMIRMVNNKKNTALHDAMFP 151
             + +  L  A +    D+V+ L++  A +  Q+                 T LH+A+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAVQM 49

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
              ++V++L R   D P      G TP  +AA + S  ++   L     ++     G TA
Sbjct: 50  SREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108

Query: 212 LHAAVMYFDFKGDHHAMRQL----------FGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
              A +Y           +             + K   +   + G T +  AA  G   +
Sbjct: 109 FMEAAVY-----GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 262 NDLLEIDQTATNIADKDRK-MTALHLAAGRGHARTVETILSLAPECFELV---------D 311
             +L +D+   ++   D     AL  A        VE I  L      L+          
Sbjct: 164 LKIL-LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL------LLDHGADVNVRG 216

Query: 312 NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
            R    L  AV    L  ++ LL        IN+ D+ G T L   A 
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 8e-32
 Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 45/238 (18%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL++       +   G TP  +AA  G   ++++ + + A             +   +  
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD------------VNECDFY 104

Query: 141 KNTALHDAMFPGNMEVVKIL---------TREDPDYPYSANDYGKTPLYMAAESESSDMV 191
             TA  +A   G ++ +K L          R+  +        G T L  AAE    +++
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 192 LTLLENCTSLSHEGPN-------GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQ 244
             LL         G +       G+ AL  A++  D          L     + + V  +
Sbjct: 165 KILL------DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGE 217

Query: 245 YGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK-MTALHLAAGRGHARTVETILS 301
            G TP+  A       +   L ++Q    I D D    TAL LA      +  E +  
Sbjct: 218 RGKTPLILAVEKKHLGLVQRL-LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  101 bits (253), Expect = 2e-24
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 26/211 (12%)

Query: 81  EILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAAR 131
           ++L+    L +     VN     G T    AA +G    ++ L  R A +  +   +   
Sbjct: 86  KLLK----LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED- 140

Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
                +     TAL DA   G++EV+KIL  E      + ++ G+  L  A  S     V
Sbjct: 141 --QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 192 LT----LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGW 247
                 LL++   ++  G  GKT L  AV           +++L  ++   +  TD  G 
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEK----KHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 248 TPIHYAAYHGKYWINDLLEIDQTATNIADKD 278
           T +  A       I +LL   + A +    D
Sbjct: 255 TALLLAVELKLKKIAELL-CKRGA-STDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 85.6 bits (213), Expect = 5e-19
 Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 21/207 (10%)

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN-GKTALHAAVMYFDFKGDHHAMR 229
           A       L  A ++E  D+V  LLE   +++ +    G T LH AV           + 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-----SREDIV 55

Query: 230 QLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAA 288
           +L  R  +   +  + G TP   AA  G   +  L  + + A  N  D     TA   AA
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFY-GFTAFMEAA 113

Query: 289 GRGHARTVETILS---------LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFA 339
             G  + ++ +              E  E +       L  A     ++ LK LL    A
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 340 RILINEGDAKGNTPLHVFAAVRPSEFN 366
              +N  D  G   L   A +   + +
Sbjct: 174 D--VNACDNMGRNALI-HALLSSDDSD 197

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  124 bits (313), Expect = 3e-33
 Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 34/265 (12%)

Query: 92  QVNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHD 147
            +          +  A ++G  +  R L++                +R  + +  T LH 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYD------------VRQPDKENVTLLHW 48

Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN 207
           A     +++VK    +         D   TPL+ A       MV+ L++     S     
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG-KYWINDLLE 266
           G + +H A  +      H ++      K   + + DQ G TP+ +AAY         LL 
Sbjct: 109 GCSCIHLAAQF-----GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL- 162

Query: 267 IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASF 325
           +      N+ DK  K TALH A   G+   +  +L       +  + +  + L  A    
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRK 221

Query: 326 QLQDLKPLLRNPFARILINEGDAKG 350
            +              L     AKG
Sbjct: 222 NVW---------MINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.6 bits (195), Expect = 6e-17
 Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 21/139 (15%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L++     +     G + +H+AA+FGH+ IV  LI +               + M++  
Sbjct: 94  QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------------VDMMDQN 141

Query: 141 KNTALHDAMFPGN-MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
             T L  A +  + ++  ++L   +         +  T L+ A  + ++ ++  LLE   
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

Query: 200 SLSHEGPNGKTALHAAVMY 218
           ++  +   G++AL  A   
Sbjct: 202 NVDAQNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 6e-15
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 45/193 (23%)

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMR 229
             +DY    +  A +    +    L+E    +        T LH A            ++
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA----INNRIDLVK 59

Query: 230 QLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAA 288
               +   + ++      TP+H+A   G   +   L +   A  ++ D +   + +HLAA
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL-MKYGADPSLIDGEGC-SCIHLAA 117

Query: 289 GRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDA 348
             GH   V  +++   +                                     ++  D 
Sbjct: 118 QFGHTSIVAYLIAKGQD-------------------------------------VDMMDQ 140

Query: 349 KGNTPLHVFAAVR 361
            G TPL  +AA R
Sbjct: 141 NGMTPLM-WAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 7/37 (18%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLID 118
           LL++    V+A+   G++ L +A +  +  ++  L +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (309), Expect = 9e-33
 Identities = 47/255 (18%), Positives = 93/255 (36%), Gaps = 39/255 (15%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRV 115
           +T LHI          +   V  ++ +      +++       TPLH+A       +VR+
Sbjct: 10  DTPLHI-----AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 116 LIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL------TREDPDYP 168
           L+   A                ++    TA H A    +   ++ L         D +  
Sbjct: 65  LVTAGAS------------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-- 110

Query: 169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSL-SHEGPNGKTALHAAVMYFDFKGDHHA 227
            + N  G T L++A  +E  + V  LLE    + + +  +G++ L  AV       +  +
Sbjct: 111 -ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-----NSLS 164

Query: 228 MRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHL 286
           M QL  +  + +      G + +H A+  G   +   L +   A +++ +     T L +
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-VRSGADSSLKNCHND-TPLMV 222

Query: 287 AAGRGHARTVETILS 301
           A  R     +    +
Sbjct: 223 ARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  117 bits (297), Expect = 5e-31
 Identities = 58/273 (21%), Positives = 98/273 (35%), Gaps = 61/273 (22%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
                  GDTPLH+A   G+   V  L++        +      + + NN + T LH A+
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLF-QQGGRE------LDIYNNLRQTPLHLAV 54

Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH----EG 205
                 VV++L       P + + +G+T  ++A E  S   +  LL++    +       
Sbjct: 55  ITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD-QYGWTPIHYAAYHGKYWINDL 264
            +G TALH AV       +     QL   + + +   D + G +P+ +A  +    +  L
Sbjct: 114 YDGLTALHVAVNT-----ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 265 LEIDQTAT-NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVA 323
           L +   A  N        +ALH A+GRG    V T++                    A  
Sbjct: 169 L-LQHGANVNAQMYSGS-SALHSASGRGLLPLVRTLVR-----------------SGA-- 207

Query: 324 SFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                               +  +   +TPL V
Sbjct: 208 ------------------DSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 7/38 (18%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR 119
            L++     + K    DTPL VA      DI+R    R
Sbjct: 201 TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  121 bits (306), Expect = 2e-32
 Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 48/239 (20%)

Query: 82  ILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEA 129
              +    + Q     N     G+T LH+AA++  SD  + L++       +        
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-------- 54

Query: 130 ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSD 189
                   +N   T LH A+      V +IL R       +    G TPL +AA      
Sbjct: 55  --------DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106

Query: 190 MVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK------VTD 243
           M+  L+ +   ++     GK+ALH A        ++     +      LLK      + +
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAV-----NNVDAAVV------LLKNGANKDMQN 155

Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
               TP+  AA  G Y    +L +D  A  +I D   +     +A  R H   V  +  
Sbjct: 156 NREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDR-LPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 83.6 bits (208), Expect = 9e-19
 Identities = 46/210 (21%), Positives = 70/210 (33%), Gaps = 47/210 (22%)

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
               V+     +        +  G+T L++AA    SD    LLE     + +   G+T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270
           LHAAV       D   + Q+  R ++  L      G TP+  AA      + + L I+  
Sbjct: 62  LHAAVSA-----DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL-INSH 115

Query: 271 A-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
           A  N  D   K +ALH AA   +      +L                  + A        
Sbjct: 116 ADVNAVDDLGK-SALHWAAAVNNVDAAVVLLK-----------------NGA-------- 149

Query: 330 LKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                 N       +  + +  TPL   AA
Sbjct: 150 ------N------KDMQNNREETPLF-LAA 166

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 41/163 (25%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
            T L +         A+   VE +LE     LI     VNA    G + LH AA   + D
Sbjct: 93  TTPLIL---------AARLAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVD 139

Query: 112 IVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS 170
              VL+   A               M NN++ T L  A   G+ E  K+L     +    
Sbjct: 140 AAVVLLKNGAN------------KDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDI 186

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
            +   + P  +A E    D+V  L E               LH
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLDEY-------NLVRSPQLH 222

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (309), Expect = 4e-32
 Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 37/223 (16%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMIRMVNN 139
            L++    +N     G T LH A    + D+V+ L++  A +   D             N
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD-------------N 104

Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
           +    LH A   G +++ + L  +      + N  G TPL +A E    +++        
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE----- 158

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
            ++ +G + + A                 RQ             + G T +H AA  G  
Sbjct: 159 -VNRQGVDIEAARKEEERI-----MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 260 WINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
            +  LL I      NI D D   T LH AA  G       ++ 
Sbjct: 213 EVLKLL-IQARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  113 bits (286), Expect = 8e-29
 Identities = 55/289 (19%), Positives = 92/289 (31%), Gaps = 48/289 (16%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           +AK      +    G    +   + + K               V          A   G+
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRK------------KTKVKFDDGAVFLAACSSGD 52

Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
            E V  L     D    AN  G T L+ A   ++ DMV  L+EN  +++     G   LH
Sbjct: 53  TEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH 111

Query: 214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG-----KYWIN----DL 264
           AA       G       L  +   +  V +  G TP+  A         +  +N    D+
Sbjct: 112 AAASC----GYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

Query: 265 LEIDQTAT----------------NIADKDRK-MTALHLAAGRGHARTVETILSLAPECF 307
               +                   N     +   TALH+AA +G+   ++ ++    +  
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-V 225

Query: 308 ELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
            + D   W  LH A    + +  + L+ N      +   +  G T   V
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.1 bits (248), Expect = 1e-23
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 21/227 (9%)

Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
           ++M + K+        + G+   ++    +                  A  S  ++ VL 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 194 LLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
           LLE    +++   +G TALH A +      D+  M +      + +   D  GW P+H A
Sbjct: 59  LLERGADINYANVDGLTALHQACID-----DNVDMVKFLVENGANINQPDNEGWIPLHAA 113

Query: 254 AYHGKYWINDLLEIDQTATNIADKDRK-MTALHLAAGRGHARTVETILSLAPECFELVDN 312
           A  G   I + L I Q A ++   + +  T L +A        ++  ++      E    
Sbjct: 114 ASCGYLDIAEYL-ISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

Query: 313 RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                +      +       L       I        G T LHV AA
Sbjct: 172 EEERIMLRDARQW-------LNSG---HINDVRHAKSGGTALHV-AA 207

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  121 bits (307), Expect = 5e-32
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 64/288 (22%)

Query: 88  ALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
              +           G +  + A    +  +V  L++  A                 N  
Sbjct: 16  KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---------------KNLL 60

Query: 141 KN-TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
           +N   LH A    + ++VKIL     D     +D G T LY A +S +   V   ++   
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 200 SLSHEGPNG-KTALHAAVMYFDFKGDHHAMRQLFGRKKSLL-----KVTDQYGWTPIHYA 253
            L   G  G KT+ + AVM      +  ++          L             + IH  
Sbjct: 120 RLMFYGKTGWKTSFYHAVML-----NDVSIVSY------FLSEIPSTFDLAILLSCIHIT 168

Query: 254 AYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSL-----APECF 307
             +G   +  LL +D    TN  +    +  + LA        ++ +        +    
Sbjct: 169 IKNGHVDMMILL-LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA--- 224

Query: 308 ELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
                         V     +  K ++      +         +  + 
Sbjct: 225 ----------NLENVLLDDAEIAKMIIEK---HVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.9 bits (198), Expect = 5e-17
 Identities = 20/182 (10%), Positives = 49/182 (26%), Gaps = 40/182 (21%)

Query: 89  LLIQ----VNAK----GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK 140
           L ++    +         T  + A       IV   +                       
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE------IP---------STFD 157

Query: 141 KN---TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP-LYMAAESESSDMVLTLLE 196
                + +H  +  G+++++ +L         + N     P + +A +++  +M+  L +
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
                     N  +A    V+      D   + ++   K    K         I      
Sbjct: 217 Y-------DINIYSANLENVLL-----DDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264

Query: 257 GK 258
            +
Sbjct: 265 DE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.5 bits (197), Expect = 7e-17
 Identities = 30/215 (13%), Positives = 50/215 (23%), Gaps = 62/215 (28%)

Query: 152 GNMEVVKILTRE-DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN--- 207
              + +K      D      A+ +G +  Y A    +  +V TLL         G     
Sbjct: 10  WKSKQLKSFLSSKDTF---KADVHGHSASYYAIADNNVRLVCTLLNA-------GALKNL 59

Query: 208 --GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
              +  LH A        +   + ++           D  G T ++YA   G      L 
Sbjct: 60  LENEFPLHQAATL-----EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 266 EIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS 324
            + +        K    T+ + A        V   LS  P                    
Sbjct: 115 -VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-------------------- 153

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                                  A   + +H    
Sbjct: 154 ------------------STFDLAILLSCIH-ITI 169

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (312), Expect = 6e-32
 Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 49/294 (16%)

Query: 91  IQVNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD 147
            Q N        P       G+  +        ++  + +            +    LH 
Sbjct: 52  RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE-----------PESPIKLHT 100

Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN-CTSLSHEGP 206
               G+  + + +TRE  +       + +T L+  A + S++    L+ +        G 
Sbjct: 101 EAA-GSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 157

Query: 207 N-------GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
           +         T L  AV+          +     +  +   + ++   + +H AA +  +
Sbjct: 158 DVNAMDCDENTPLMLAVLA-----RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212

Query: 260 WINDLLEIDQTAT----NIADKDRKMTALHLAAGRGHARTVET----------ILSLAPE 305
            +   + ++ T         D++  MTAL + A       V +          +      
Sbjct: 213 GMMVYM-LNSTKLKGDIEELDRNG-MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

Query: 306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
             +    +    LHYA     +  +K L+    +    ++ D  G TP+   AA
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN--KDKQDEDGKTPIM-LAA 321

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (311), Expect = 8e-32
 Identities = 53/375 (14%), Positives = 104/375 (27%), Gaps = 68/375 (18%)

Query: 7   IEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINI 66
           +E EE      ++   SQ    LL+A+ DG  +          +                
Sbjct: 21  MENEEKNRKNHQSITSSQH--SLLEASYDGYIK---------RQRNELQHYSLYPNPQ-- 67

Query: 67  MCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL 122
                        + + +     L             LH  A  G   I   +      +
Sbjct: 68  -------GYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI 119

Query: 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA-------NDYG 175
                               T LH      + E  + L   +     +A       +   
Sbjct: 120 IDP-------------RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166

Query: 176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK 235
            TPL +A  +    +V  L++     +    + ++ALH A            M       
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-----RDFGMMVYMLNS 221

Query: 236 KSL---LKVTDQYGWTPIHYAAYHG--------KYWIN---DLLEIDQTATNIADKDRKM 281
             L   ++  D+ G T +   A++         K  +     +        +      + 
Sbjct: 222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR- 280

Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARI 341
           TALH AA   +   V+ ++       +  D      +  A    +++ +  L++   A +
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASV 339

Query: 342 LINEGDAKGNTPLHV 356
                DA  +T   +
Sbjct: 340 --EAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (304), Expect = 7e-31
 Identities = 67/319 (21%), Positives = 110/319 (34%), Gaps = 63/319 (19%)

Query: 15  LGSKAANQSQTDPK---LLKAAADGNAEPFKDMAREVIESLLT-----LQTRN--TILHI 64
             +     ++ +P+    L   A G+          + E +       +  R+  T+LH 
Sbjct: 80  NHTNLQIPTEPEPESPIKLHTEAAGS--------YAITEPITRESVNIIDPRHNRTVLHW 131

Query: 65  NIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLI 117
                 A N+S +  E+++       I     VNA     +TPL +A       +V  L+
Sbjct: 132 -----IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 118 DR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD--YPYSANDY 174
              A               + N  + +ALH A    +  ++  +             +  
Sbjct: 187 KAGAD------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234

Query: 175 GKTPLYMAAESESSDMVLT---LLE-----NCTSLSHEGP---NGKTALHAAVMYFDFKG 223
           G T L + A +E  D V +   L+E     +    + +      G+TALH A        
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV----S 290

Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMT 282
           +   ++ L G K S     D+ G TPI  AA  G+  +   L I Q A     D     T
Sbjct: 291 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL-IQQGASVEAVDATDH-T 348

Query: 283 ALHLAAGRGHARTVETILS 301
           A  LA    H   V+    
Sbjct: 349 ARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (254), Expect = 6e-24
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 26/229 (11%)

Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
                 +L +A + G ++  +               Y   P      + +  +      N
Sbjct: 34  ITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGNDFLGDFNHTN 83

Query: 198 CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
               +   P     LH         G +     +   ++S+  +  ++  T +H+ A + 
Sbjct: 84  LQIPTEPEPESPIKLHTEA-----AGSYAITEPIT--RESVNIIDPRHNRTVLHWIASNS 136

Query: 258 KYWINDLLEIDQTATNI---ADKDRK----MTALHLAAGRGHARTVETILSLAPECFELV 310
               ++ L + +    I   AD +       T L LA      R V  ++    +   + 
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIY 195

Query: 311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
           +    + LH A A+     +  +L +   +  I E D  G T L    A
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM-IVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 81  EILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK 140
           ++     A       KG T LH AA+  +  IV+ L+      + G           +  
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV-----GEKGSN-----KDKQDED 312

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
             T +  A   G +EVV  L ++      + +    T   +A  +   ++V      
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 83  LEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIR 135
           + I   L+ +     + +   G TP+ +AA+ G  ++V  LI      Q         + 
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-----QGAS------VE 340

Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPD 166
            V+   +TA   A    +  +V I  R  P+
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  120 bits (303), Expect = 7e-32
 Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDA 148
              +     +PLH AA+ GH DI  +L+   A             I   +  + T L +A
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------------IDTCSEDQRTPLMEA 51

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN- 207
               ++E VK L +         +  G T L++AA+    ++V  L      LS+   + 
Sbjct: 52  AENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYL------LSNGQMDV 104

Query: 208 ------GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
                 G T +  A  Y      H  + +L   K S + + D      +H+AA+ G   I
Sbjct: 105 NCQDDGGWTPMIWATEY-----KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 262 NDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY 320
            ++L +      +  +     + LH+AA       V   LS   +   L +      L  
Sbjct: 160 AEIL-LAAKCDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQC 216

Query: 321 A 321
           A
Sbjct: 217 A 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  117 bits (296), Expect = 7e-31
 Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 28/222 (12%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           +L+Q    ++       TPL  AA+  H + V+ LI   A             +   + +
Sbjct: 29  MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL------------VDPKDAE 76

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS 200
            +T LH A   G+ EVV+ L           +D G TP+  A E +  D+V  LL   + 
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
           ++         LH A            + ++    K  L   + +G +P+H AA   +Y 
Sbjct: 137 INIRDNEENICLHWAAFS-----GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
              L  + + +   + +K+ + T L  A+      +   +  
Sbjct: 192 CVVLF-LSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.0 bits (196), Expect = 5e-17
 Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 45/189 (23%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
           +   ++PL+ AAE+   D+   L++   ++     + +T L  A        +H    + 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-----NHLEAVKY 62

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK-MTALHLAAGR 290
             +  +L+   D  G T +H AA  G Y +   L +     ++  +D    T +  A   
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL-LSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 291 GHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKG 350
            H   V+ +LS                   +                     IN  D + 
Sbjct: 122 KHVDLVKLLLS-----------------KGSD--------------------INIRDNEE 144

Query: 351 NTPLHVFAA 359
           N  LH +AA
Sbjct: 145 NICLH-WAA 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 8e-15
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL+     +N +    +  LH AA  G  DI  +L+                 +  VN  
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD------------LHAVNIH 176

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
            ++ LH A      + V +    D D     N  G+TPL  A+ +      L + + 
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 8e-10
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 20/86 (23%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           +L+     ++A    GD+PLH+AA+    D V + + R +             + + N +
Sbjct: 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD------------VTLKNKE 209

Query: 141 KNTALHDAMFPGNMEVVKILTREDPD 166
             T L  A     +     +++   D
Sbjct: 210 GETPLQCASLNSQVWSALQMSKALQD 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  118 bits (299), Expect = 4e-31
 Identities = 58/259 (22%), Positives = 91/259 (35%), Gaps = 41/259 (15%)

Query: 59  NTILHINIMCQDAENASTKFVEE-ILEICPALLIQ----VNAK---GDTPLHVAAKFGHS 110
            T L I               EE    +    + Q     N     G+T LH+AA++  S
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 111 DIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY 169
           D  + L++  A               + +N   T LH A+      V +IL R       
Sbjct: 71  DAAKRLLEASAD------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMR 229
           +    G TPL +AA      M+  L+ +   ++     GK+ALH A        ++    
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-----NNVDAA 173

Query: 230 QLFGRKKSLLK------VTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMT 282
            +      LLK      + +    TP+  AA  G Y    +L +D  A  +I D   +  
Sbjct: 174 VV------LLKNGANKDMQNNREETPLFLAAREGSYETAKVL-LDHFANRDITDHMDR-L 225

Query: 283 ALHLAAGRGHARTVETILS 301
              +A  R H   V  +  
Sbjct: 226 PRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (266), Expect = 2e-26
 Identities = 50/293 (17%), Positives = 89/293 (30%), Gaps = 95/293 (32%)

Query: 93  VNAK---GDTPLHVAAKFG-------------HSDIVRVLIDR-AKLAQDGDEAARQMIR 135
           VN +   G TPL +A+  G                ++   I + A               
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-------------- 48

Query: 136 MVNNKKN----TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
            ++N+ +    TALH A      +  K L     D     ++ G+TPL+ A  +++  + 
Sbjct: 49  -LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVF 106

Query: 192 LTLLENCTSLSHEGPN-------GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQ 244
             L      + +   +       G T L  A            M +      + +   D 
Sbjct: 107 QIL------IRNRATDLDARMHDGTTPLILAARL-----AVEGMLEDLINSHADVNAVDD 155

Query: 245 YGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAAGRGHARTVETILSLA 303
            G + +H+AA         +L +   A  ++ +   + T L LAA  G   T + +L   
Sbjct: 156 LGKSALHWAAAVNNVDAAVVL-LKNGANKDMQNNREE-TPLFLAAREGSYETAKVLLD-- 211

Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                          H+A              N       +  D     P  +
Sbjct: 212 ---------------HFA--------------N------RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
            T L +         A+   VE +LE     LI     VNA    G + LH AA   + D
Sbjct: 125 TTPLIL---------AARLAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVD 171

Query: 112 IVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS 170
              VL+   A               M NN++ T L  A   G+ E  K+L     +    
Sbjct: 172 AAVVLLKNGAN------------KDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDI 218

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLEN 197
            +   + P  +A E    D+V  L   
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 243 DQYGWTPIHYAAYHG----------KYWINDLLE--IDQTA--TNIADKDRKMTALHLAA 288
              G+TP+  A+  G          +     ++   I Q A   N  D+  + TALHLAA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TALHLAA 65

Query: 289 GRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDA 348
               +   + +L  + +   + DN     LH AV++      + L+RN      ++    
Sbjct: 66  RYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRN--RATDLDARMH 122

Query: 349 KGNTPLHVFAA 359
            G TPL   AA
Sbjct: 123 DGTTPLI-LAA 132

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  116 bits (294), Expect = 1e-30
 Identities = 58/249 (23%), Positives = 93/249 (37%), Gaps = 31/249 (12%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRV 115
           N  LH               V+E+L   P+    +  K   G  PLH +  F   +I   
Sbjct: 3   NYPLHQA-----CMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSF 54

Query: 116 LIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL--TREDPDYPYSAND 173
           L+ + +     D          ++   T  H A   GN+EVVK L      PD      +
Sbjct: 55  LLSKMENVNLDDY--------PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITN 105

Query: 174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG 233
            G T L++A   +  ++   L+EN  S+  +    +  LH A       G    +  L G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----SVGSLKLIELLCG 161

Query: 234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK-MTALHLAAGRGH 292
             KS +   D+ GWTP+ +A   G      LL +++        D K   A  +A    +
Sbjct: 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL-VEKYGAEYDLVDNKGAKAEDVAL---N 217

Query: 293 ARTVETILS 301
            +  +  L+
Sbjct: 218 EQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (289), Expect = 5e-30
 Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 31/236 (13%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
            + PLH A        V+ L+     ++         +   +      LH ++     E+
Sbjct: 2   SNYPLHQACMENEFFKVQELL----HSKPSL------LLQKDQDGRIPLHWSVSFQAHEI 51

Query: 157 VKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN------- 207
              L  +  + +     +D G TP ++A    + ++V +L +         P+       
Sbjct: 52  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-----PLKPDLNKITNQ 106

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI 267
           G T LH AV           + Q      + +++ D++   P+H AA  G   + +LL  
Sbjct: 107 GVTCLHLAVGK-----KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL-C 160

Query: 268 DQTATNIADKDRK-MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
               + +  +D++  T L  A   GH      ++      ++LVDN+       A+
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (292), Expect = 2e-30
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 25/226 (11%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           G   +  A           L       ++GD      I  + +  +T        G   +
Sbjct: 12  GQVKVFRALYTFEPRTPDELY-----IEEGD------IIYITDMSDTNWWKGTSKGRTGL 60

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
           +         Y     +    PL+ AA+  +   +   L+N   ++     G TAL+ A 
Sbjct: 61  IPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC 114

Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIA 275
                 G    +  LF +    L   ++ G T +H AA+ G   I  LL + + A T++ 
Sbjct: 115 ----HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL-LAKGARTDLR 169

Query: 276 DKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
           + ++K  A  +A     A  ++           L +   +     +
Sbjct: 170 NIEKK-LAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 4e-25
 Identities = 29/210 (13%), Positives = 55/210 (26%), Gaps = 36/210 (17%)

Query: 90  LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           +I +    DT        G + ++       +                    +  LH+A 
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ----------------AESIDNPLHEAA 81

Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN-- 207
             GN+  ++             +  G T LY A      D+V  L       +       
Sbjct: 82  KRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEML------FTQPNIELN 134

Query: 208 -----GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN 262
                G TALHAA         +  + QL   K +   + +         A       + 
Sbjct: 135 QQNKLGDTALHAAAWK-----GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189

Query: 263 DLLEIDQTATNIADKDRKMTALHLAAGRGH 292
              +       +++ +        +    H
Sbjct: 190 KKKQGTDAVRTLSNAE-DYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 85.0 bits (211), Expect = 3e-19
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 16/190 (8%)

Query: 168 PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHA 227
           P      G+  ++ A  +        L      + +      T           KG    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT----SKGRTGL 60

Query: 228 MRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHL 286
           +   +  ++       +    P+H AA  G         +D     N  DK    TAL+ 
Sbjct: 61  IPSNYVAEQ------AESIDNPLHEAAKRGNLSWLREC-LDNRVGVNGLDKAGS-TALYW 112

Query: 287 AAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG 346
           A   GH   VE + +         +      LH A        ++ LL    AR   +  
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-AR--TDLR 169

Query: 347 DAKGNTPLHV 356
           + +      +
Sbjct: 170 NIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.5 bits (202), Expect = 5e-18
 Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 35/175 (20%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
           +  LH          A+ +     L       +     VN     G T L+ A   GH D
Sbjct: 74  DNPLHE---------AAKRGNLSWLR----ECLDNRVGVNGLDKAGSTALYWACHGGHKD 120

Query: 112 IVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA 171
           IV +L       Q   E     +   N   +TALH A + G  ++V++L  +        
Sbjct: 121 IVEMLFT-----QPNIE-----LNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLR 169

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHH 226
           N   K    MA  +  + ++          +            +    D +  HH
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS----DLEHHHH 220

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (294), Expect = 4e-30
 Identities = 46/280 (16%), Positives = 85/280 (30%), Gaps = 62/280 (22%)

Query: 79  VEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMV 137
              I  +   L+        +P+H AA  GH   +R LI +               + ++
Sbjct: 42  FPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQGWA------------VNII 88

Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
                + LH+A   G++  VKIL +              TPL+ A  S S D V  LL++
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQH 147

Query: 198 CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
             S+  E  +  + +H A         H             +     +  TP++ A  + 
Sbjct: 148 GASVQPES-DLASPIHEAARR-----GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201

Query: 258 KYWINDLLEIDQTATNI-ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWN 316
           +      L ++  A ++   K +  + LH             ++                
Sbjct: 202 QRACVKKL-LESGA-DVNQGKGQD-SPLHAVVRTASEELACLLMD--------------- 243

Query: 317 FLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
               A                         +A+G  P+ +
Sbjct: 244 --FGA--------------------DTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (289), Expect = 2e-29
 Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 49/229 (21%)

Query: 80  EEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAAR 131
           +  L      LI     VN       +PLH A   GH   V++L+   A+          
Sbjct: 72  QLSLR----NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---------- 117

Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSD 189
             +  V    +T L +A   G+ + V +L +                +P++ AA     +
Sbjct: 118 --VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVE 171

Query: 190 MVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV-----TDQ 244
            V +L+    ++ H+  +  T L+ A           A  +       LL+        +
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTPLYLACEN-----QQRACVKK------LLESGADVNQGK 220

Query: 245 YGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGH 292
              +P+H         +  LL +D  A T   + + K   + L      
Sbjct: 221 GQDSPLHAVVRTASEELACLL-MDFGADTQAKNAEGK-RPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (258), Expect = 4e-25
 Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 41/264 (15%)

Query: 103 VAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
           + +   H      L+ R + + + DG +             +       FPG   +   L
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDG--------SKPAGPRDFPGIRLLSNPL 52

Query: 161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD 220
             +             +P++ AA       +  L+    +++    +  + LH A +   
Sbjct: 53  MGDAVS--------DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-- 102

Query: 221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK 280
               H +  ++  +  + +        TP+  A   G +   +LL +   A ++  +   
Sbjct: 103 ---GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL-LQHGA-SVQPESDL 157

Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
            + +H AA RGH   V ++++      +   +     L+ A  + Q             +
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRA---------CVK 207

Query: 341 ILINEG-----DAKGNTPLHVFAA 359
            L+  G         ++PLH    
Sbjct: 208 KLLESGADVNQGKGQDSPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 26/114 (22%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            LI     ++ K     TPL++A +      V+ L++  A                VN  
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD---------------VNQG 219

Query: 141 KN--TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVL 192
           K   + LH  +   + E+  +L     D   + N  GK P+ +         + 
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPESPLAQLF 272

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (287), Expect = 1e-29
 Identities = 51/244 (20%), Positives = 83/244 (34%), Gaps = 30/244 (12%)

Query: 92  QVNAKGDTPLHVAAKFGHS----DIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD 147
           Q+   GD+ LH+A          +++R +                 +   NN + T LH 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD------LAF-----LNFQNNLQQTPLHL 51

Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP- 206
           A+     E+ + L     D P   +  G TPL++A E      V  L ++CT+       
Sbjct: 52  AVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 207 -----NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
                NG T LH A ++    G    +  L      +       G T +H A       +
Sbjct: 111 KATNYNGHTCLHLASIH----GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166

Query: 262 NDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY 320
             LL +   A  N        +   L  GR   R  + +  L  E  +++     +   Y
Sbjct: 167 VSLL-LKCGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE-DEESY 223

Query: 321 AVAS 324
              S
Sbjct: 224 DTES 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 96.1 bits (240), Expect = 4e-23
 Identities = 45/281 (16%), Positives = 76/281 (27%), Gaps = 76/281 (27%)

Query: 32  AAADGNAEPFKDMAREVIESLLTLQ--------TRNTILHINIMCQDAENASTKFVEEIL 83
           A         K +  EVI  +             + T LH+            +  E   
Sbjct: 15  AIIHEE----KALTMEVIRQVKGDLAFLNFQNNLQQTPLHL-----AVITNQPEIAE--- 62

Query: 84  EICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
                 L+        +   G+TPLH+A + G    V VL                +++ 
Sbjct: 63  -----ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-----SCTTPHLHSILKA 112

Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
            N   +T LH A   G + +V++L     D        G+T L++A + ++ D+V  LL+
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
                   G +                               +      G++P       
Sbjct: 173 C-------GAD-------------------------------VNRVTYQGYSPYQLTWGR 194

Query: 257 GKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE 297
               I   L    T  N+                      E
Sbjct: 195 PSTRIQQQL-GQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 243 DQYGWTPIHYAAYHG-KYWINDLLE--IDQTA-TNIADKDRKMTALHLAAGRGHARTVET 298
            + G + +H A  H  K    +++       A  N  +  ++ T LHLA         E 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEIAEA 63

Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLR---NPFARILINEGDAKGNTPLH 355
           +L    +  EL D R    LH A     L  +  L +    P    ++   +  G+T LH
Sbjct: 64  LLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 356 V 356
           +
Sbjct: 123 L 123

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (286), Expect = 3e-29
 Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 45/259 (17%)

Query: 71  AENASTKFVEEILEICPAL---LIQVNAK----GDTPLHVA---AKFGHSDIVRVLIDRA 120
              ++ + +E +L         L     K    G T L  A      G +D + +L+D A
Sbjct: 21  VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80

Query: 121 KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL-------------TREDPDY 167
           +      +           K  TALH A+   NM +V +L                    
Sbjct: 81  RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTK 140

Query: 168 PYSANDYGKTPLYMAAESESSDMVLTLLEN---CTSLSHEGPNGKTALHAAVMYFDFKGD 224
                 +G+ PL +AA +    +V  LL+N      +S     G T LHA V   D   D
Sbjct: 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200

Query: 225 -----------HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATN 273
                         +         L ++T++ G TP+  AA  GK  +   + + +    
Sbjct: 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI-LQR---- 255

Query: 274 IADKDRKMTALHLAAGRGH 292
             +   +    H AA   H
Sbjct: 256 --EIH-EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 36/211 (17%), Positives = 60/211 (28%), Gaps = 56/211 (26%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
             Y +  ++ A    +   + +LL                      + D           
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRL--------TDSEFKD----------- 50

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND----LLEIDQTA--------TNIADKDR 279
                       + G T +  A  +     ND    LL++ +           +  D   
Sbjct: 51  -----------PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY 99

Query: 280 K-MTALHLAAGRGHARTVETILS-------------LAPECFELVDNRRWNFLHYAVASF 325
           K  TALH+A  R +   V  ++                              L  A  + 
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 326 QLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           QL  +K LL+N +    I+  D+ GNT LH 
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHA 190

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  110 bits (276), Expect = 6e-28
 Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 41/226 (18%)

Query: 94  NAKGDTPLHVAA---KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMF 150
            + G T L  A    + G +  +  L+   K + +              + ++ALH A+ 
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 151 PGNMEVVKIL------------TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN- 197
             +++ VK+L             R    +  +   +G+ PL +AA ++  D+V  LLEN 
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 198 --CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY 255
               SL      G T LHA VM  D                      +    + +    Y
Sbjct: 160 HQPASLEATDSLGNTVLHALVMIAD----------------------NSPENSALVIHMY 197

Query: 256 HGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
            G   +   L        I++    +T L LAA  G       IL 
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQ-GLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ--------MIRMVNNKKNTALHDA 148
           G+ PL +AA     D+V  L++        +             ++   N+ +N+AL   
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
           M+ G +++   L          +N  G TPL +AA+    ++   +L+          +G
Sbjct: 196 MYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQR-------EFSG 247

Query: 209 KTALHAA 215
             A H  
Sbjct: 248 AAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 36/181 (19%)

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVT-------DQYGWTPIHYAAYHGKYW 260
            +  L + V     +G    +  L    +   K            G T +  A  + +  
Sbjct: 2   DRDRLFSVVS----RGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDG 57

Query: 261 IND----LLEIDQTA--------TNIADKDRK-MTALHLAAGRGHARTVETILS------ 301
           +N     LL+ID+ +            D+  +  +ALH+A  +   + V+ ++       
Sbjct: 58  VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Query: 302 ------LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
                    +            L  A  + Q   +  LL NP     +   D+ GNT LH
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177

Query: 356 V 356
            
Sbjct: 178 A 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 59  NTILHINIMCQDAENASTKFV----EEILEICPALLIQ------VNAKGDTPLHVAAKFG 108
           NT+LH  +M  D    ++  V    + +L++   L          N +G TPL +AAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 109 HSDIVRVLIDR 119
             +I R ++ R
Sbjct: 233 KIEIFRHILQR 243

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  105 bits (264), Expect = 1e-26
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 21/226 (9%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
                ++A      ++   ++   +                 +    TALH A   G+ E
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSL------------ATRTDQDSRTALHWACSAGHTE 54

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           +V+ L +         +D G +PL++AA +   ++V  LL     ++    NG T LH A
Sbjct: 55  IVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113

Query: 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIA 275
                   + H +  +     +     D Y  T +H AA  G   +  +L   + +TNI 
Sbjct: 114 ASK-----NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168

Query: 276 DKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
           D +   T LHLA         + +++       + +      L  A
Sbjct: 169 DTEGN-TPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (254), Expect = 3e-25
 Identities = 53/254 (20%), Positives = 89/254 (35%), Gaps = 50/254 (19%)

Query: 60  TILHINIMCQDAENASTKFVEEILEICPALLI----QVNAK---GDTPLHVAAKFGHSDI 112
            I ++         A +  ++E+ E     ++              T LH A   GH++I
Sbjct: 9   MICNL---------AYSGKLDELKE----RILADKSLATRTDQDSRTALHWACSAGHTEI 55

Query: 113 VRVLIDR-----AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDY 167
           V  L+        K                ++   + LH A   G  E+VK L  +    
Sbjct: 56  VEFLLQLGVPVNDK----------------DDAGWSPLHIAASAGXDEIVKALLVKGAH- 98

Query: 168 PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHA 227
             + N  G TPL+ AA     ++ + LLE   +   +     TA+H A         +  
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-----GNLK 153

Query: 228 MRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLA 287
           M  +    K+   + D  G TP+H A    +      L     +  I +K+ K T L +A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK-TPLQVA 212

Query: 288 AGRGHARTVETILS 301
              G    +   L+
Sbjct: 213 K--GGLGLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 10/198 (5%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
                    +A   +  ++   +L + +  +    + +TALH A         H  + + 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-----GHTEIVEF 58

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291
             +    +   D  GW+P+H AA  G   I   L +     N  +++   T LH AA + 
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKN 117

Query: 292 HARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGN 351
                  +L       +  D+     +H A A   L+ +  LL     +   N  D +GN
Sbjct: 118 RHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGN 173

Query: 352 TPLHVFAAVRPSEFNRYM 369
           TPLH+       E  +++
Sbjct: 174 TPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 19/211 (9%)

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           +E C        +     + A       G    +++     KSL   TDQ   T +H+A 
Sbjct: 1   MEGCV-------SNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWAC 48

Query: 255 YHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNR 313
             G   I + L +      N  D     + LH+AA  G    V+ +L         V+  
Sbjct: 49  SAGHTEIVEFL-LQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAH-VNAVNQN 105

Query: 314 RWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTT 373
               LHYA +  + +    LL         +  D    T +H  AA    +    +    
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 374 HANYQAVNDQNVSVGHIMKYGYPELLVINLS 404
            +      + N  +         E     ++
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  103 bits (260), Expect = 2e-26
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
               +    + G++  VR+ +D      D ++         ++   + LH A   G   V
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNT--ENDLNQG--------DDHGFSPLHWACREGRSAV 54

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
           V++L           N    TPL++AA     D+V  LL+    ++    +G   LH A 
Sbjct: 55  VEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 113

Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIAD 276
            +         + +      +L+ + ++YG  P+  A    +  + +         N+  
Sbjct: 114 FW-----GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA-EKMGQ-NLNR 166

Query: 277 KDRKMTALHLAAGRGHAR 294
                        +G  R
Sbjct: 167 IP-----YKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
           +LI     +N      DTPLH+AA  GH DIV+ L+         D      I  VN   
Sbjct: 57  MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKAD------INAVNEHG 105

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
           N  LH A F G  +V + L           N YG+ P+  A       +     + 
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 8e-17
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
           P     +         +G+  A+R      ++ L   D +G++P+H+A   G+  + ++L
Sbjct: 3   PEFMDDIFTQC----REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58

Query: 266 EIDQTAT-NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS 324
            I + A  N+ ++    T LHLAA  GH   V+ +L    +    V+      LHYA   
Sbjct: 59  -IMRGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFW 115

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
            Q Q  + L+ N     L++  +  G  P+   A 
Sbjct: 116 GQDQVAEDLVAN---GALVSICNKYGEMPVD-KAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 275 ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL 334
              +  M  +      G+A  V   L          D+  ++ LH+A    +   ++ L+
Sbjct: 1   GSPEF-MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 335 RNPFARILINEGDAKGNTPLHVFAA 359
               AR  IN  +   +TPLH  AA
Sbjct: 60  MRG-AR--INVMNRGDDTPLH-LAA 80

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  103 bits (260), Expect = 3e-26
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 53/229 (23%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
             +    L  A +     +  +L D   +            +  V+ + NT L+ A+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ------------VDEVDTEGNTPLNIAVHNN 50

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN----- 207
           ++E+ K L     D     N    +P   A     ++++  +      L H  P+     
Sbjct: 51  DIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYM------LKHATPDLNKHN 103

Query: 208 --GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK-------VTDQYGWTPIHYAAYHGK 258
             G  AL  A         H    +L      LL+         + +G+T +  A    +
Sbjct: 104 RYGGNALIPAAEK-----GHIDNVKL------LLEDGREDIDFQNDFGYTALIEAVGLRE 152

Query: 259 YWINDLLE-----IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
                  +     ++  A  +I D   + TA+  A  +G+    + +  
Sbjct: 153 GN-QLYQDIVKLLMENGADQSIKDNSGR-TAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 30/201 (14%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
                  L  A + ++  +   L +    +      G T L+ AV       +   + + 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-----NDIEIAKA 57

Query: 232 FGRKKSLLKV------TDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK-MTAL 284
                 L+         +    +P  YA   G+  I   + +     ++   +R    AL
Sbjct: 58  ------LIDRGADINLQNSISDSPYLYAGAQGRTEILAYM-LKHATPDLNKHNRYGGNAL 110

Query: 285 HLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI- 343
             AA +GH   V+ +L    E  +  ++  +  L  AV   +   L         ++L+ 
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL----YQDIVKLLME 166

Query: 344 -----NEGDAKGNTPLHVFAA 359
                +  D  G T +  +A 
Sbjct: 167 NGADQSIKDNSGRTAMD-YAN 186

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 3e-18
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 22/142 (15%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKK 141
            LI     +N +    D+P   A   G ++I+  ++  A    D        +   N   
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA--TPD--------LNKHNRYG 106

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESS-----DMVLTLLE 196
             AL  A   G+++ VK+L  +  +     ND+G T L  A           D+V  L+E
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 197 NCTSLSHEGPNGKTALHAAVMY 218
           N    S +  +G+TA+  A   
Sbjct: 167 NGADQSIKDNSGRTAMDYANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.6 bits (156), Expect = 5e-12
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETI 299
           +        +  A       + ++L  D T   +  D +   T L++A         + +
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEIL-QDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKAL 58

Query: 300 LSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
           +    +   L ++   +   YA A  + + L  +L++  A   +N+ +  G   L   AA
Sbjct: 59  IDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKH--ATPDLNKHNRYGGNALI-PAA 114

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 15/66 (22%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
            T L   +  ++        V+        LL++     + K   G T +  A + G+++
Sbjct: 141 YTALIEAVGLREGNQLYQDIVK--------LLMENGADQSIKDNSGRTAMDYANQKGYTE 192

Query: 112 IVRVLI 117
           I ++L 
Sbjct: 193 ISKILA 198

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  104 bits (261), Expect = 6e-26
 Identities = 43/238 (18%), Positives = 75/238 (31%), Gaps = 55/238 (23%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
            ++PL +AAK      +  L     L  +G E     +        TALH A    N+E 
Sbjct: 3   WESPLLLAAKENDVQALSKL-----LKFEGCE-----VHQRGAMGETALHIAALYDNLEA 52

Query: 157 VKILTREDPD----YPYSANDYGKTPLYMAAESESSDMVLTLLEN-------------CT 199
             +L    P+       S    G+T L++A  +++ ++V  LL                 
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY 112

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK------VTDQYGWTPIHYA 253
              +    G+  L  A            + +L      L++        D  G T +H  
Sbjct: 113 RPHNLIYYGEHPLSFAACV-----GSEEIVRL------LIEHGADIRAQDSLGNTVLHIL 161

Query: 254 AYHG-----KYWINDLLEID-----QTATNIADKDRKMTALHLAAGRGHARTVETILS 301
                        N LL  D     ++   + +     T   LA   G+    + ++ 
Sbjct: 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 26/174 (14%)

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL-- 265
            ++ L  A        D  A+ +L   +   +      G T +H AA +       +L  
Sbjct: 3   WESPLLLAAKE----NDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 266 ---EIDQTATNIADKDRKMTALHLAAGRGHARTVETILS------------LAPECFELV 310
              E+          + + TALH+A    +   V  +L+            +       +
Sbjct: 59  AAPELVFEPMTSELYEGQ-TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 311 DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSE 364
                + L +A      + ++ L+ +      I   D+ GNT LH    ++P++
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEH---GADIRAQDSLGNTVLH-ILILQPNK 167

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 44/217 (20%)

Query: 174 YGKTPLYMAAESESSDMVLTLLENCTSLSH------EGPNGKTALHAAVMYFDFKGDHHA 227
             ++PL +AA+      +  LL               G  G+TALH A +Y     +  A
Sbjct: 2   IWESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALY----DNLEA 52

Query: 228 MRQLFGR----KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKM-- 281
              L           +      G T +H A  +    +   L + + A +++ +      
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL-LARGA-SVSARATGSVF 110

Query: 282 ------------TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS----F 325
                         L  AA  G    V  ++    +     D+     LH  +      F
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTF 169

Query: 326 QLQDLKPLLR---NPFARILINEGDAKGNTPLHVFAA 359
             Q    LL        + L    + +G TP    A 
Sbjct: 170 ACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 22/74 (29%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---------GDTPLHVAA 105
           NT+LHI          +  F  ++      LL+      + K         G TP  +A 
Sbjct: 155 NTVLHIL-----ILQPNKTFACQMYN----LLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

Query: 106 KFGHSDIVRVLIDR 119
             G+  + + L+ +
Sbjct: 206 VEGNIVMFQHLMQK 219

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 6e-25
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 8/161 (4%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
           + ++H     G ++ +K   R+  +     ++ G TPL  A+     + V  LLE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
                  ++AL  A         +  +  L   +   + + D  G TP+ YA        
Sbjct: 63  HILAKERESALSLASTG-----GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC 117

Query: 262 NDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
            + L + + A           T + LA   G+ +  + I +
Sbjct: 118 VEAL-LARGADLTTEADSG-YTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.7 bits (229), Expect = 4e-22
 Identities = 40/175 (22%), Positives = 64/175 (36%), Gaps = 26/175 (14%)

Query: 83  LEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMI 134
           L+     L +    VN     G TPL  A+ FG  + VR L++  A              
Sbjct: 15  LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------------P 62

Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
            ++  ++ +AL  A   G  ++V +L   D D     +  G TPL  A        V  L
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP 249
           L     L+ E  +G T +  AV        +  ++Q+       L  ++     P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVAL-----GYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.0 bits (152), Expect = 1e-11
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 45/153 (29%)

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI 267
              ++H        +G+   +++   +  +L+   D+ G+TP+ +A+  G+      L +
Sbjct: 2   DSLSIHQLA----AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL-L 56

Query: 268 DQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ 326
           +  A  +I  K+R  +AL LA+  G+   V            L++               
Sbjct: 57  EWGADPHILAKER-ESALSLASTGGYTDIVGL----------LLERD---------VD-- 94

Query: 327 LQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                           IN  D  G TPL  +A 
Sbjct: 95  ----------------INIYDWNGGTPLL-YAV 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.4 bits (249), Expect = 9e-25
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           ++  G+    +  +   +  +  L +  +                ++   T L  A   G
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR----------------DSYNRTPLMVACMLG 46

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
               +  L           +  G T L  A ++    +   LL   ++++ +  +GKT L
Sbjct: 47  MENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105

Query: 213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKV------TDQYGWTPIHYAAYHGKYWINDLLE 266
             ++++      +  M         LL+        +  G TP+  A+ +G+  I   L 
Sbjct: 106 MWSIIF-----GYSEMSYF------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL- 153

Query: 267 IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
           ++  A  +  D     TA   A   G    ++    
Sbjct: 154 LELGADISARDLTGL-TAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 28/84 (33%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAARQMIRM 136
            L++    VN +   G+TPL VA+K+G S+IV+ L++      A+               
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR--------------- 163

Query: 137 VNNKKNTALHDAMFPGNMEVVKIL 160
            +    TA   A   G  EV+KI 
Sbjct: 164 -DLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDRAK 121
           ++A+   G T    A  FG  +++++  +  +
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  101 bits (253), Expect = 1e-24
 Identities = 51/242 (21%), Positives = 79/242 (32%), Gaps = 51/242 (21%)

Query: 58  RNTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK-------GDTPLHVAA- 105
           R  +  I          S   +E +L      L+     +  +       G T L  A  
Sbjct: 6   RPILFDI------VSRGSPDGLEGLLS----FLLTHKKRLTDEEFREPSTGKTCLPKALL 55

Query: 106 --KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL--- 160
               G +D + +L+D A+   +  E      R V  +  TALH A+       V++L   
Sbjct: 56  NLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115

Query: 161 ----------TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH---EGPN 207
                         P        +G+ PL +AA +    +V  L EN    +    +   
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 208 GKTALHAAVMYFD----FKGDHHAMRQL-------FGRKKSLLKVTDQYGWTPIHYAAYH 256
           G T LHA V   D           M  L            +L  + +  G +P+  AA  
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 257 GK 258
           GK
Sbjct: 236 GK 237

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 35/184 (19%), Positives = 55/184 (29%), Gaps = 31/184 (16%)

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD----QYGWTPIHYAAYHGKYWIND 263
            +  L   V      G    +       K  L   +      G T +  A  +     ND
Sbjct: 5   NRPILFDIVSRGSPDG-LEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 264 ----LLEIDQTA--------TNIADKDRK-MTALHLAAGRGHARTVETILS--------- 301
               LL+I +          +   D   +  TALH+A  R     VE ++          
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 302 ----LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVF 357
                 P+            L  A  + Q   +  L  N   +  +   D++GNT LH  
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 358 AAVR 361
            A+ 
Sbjct: 184 VAIA 187

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 97.5 bits (244), Expect = 2e-24
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 55/208 (26%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM 154
                L  AA  G  + +  L+                 +   N    TAL      GN 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN------------VNAQNGFGRTALQVMKL-GNP 50

Query: 155 EVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214
           E+ + L     + P   +  G   ++ AA +   D + TLLE          +       
Sbjct: 51  EIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEF-------QAD------- 95

Query: 215 AVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNI 274
                                   + + D  G  P+H AA  G   + + L +  TA+N+
Sbjct: 96  ------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFL-VKHTASNV 130

Query: 275 ADKDRK-MTALHLAAGRGHARTVETILS 301
             ++ K  TA  LA   G    V  + +
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
            +     L  AA     + + +LL+N  +++ +   G+TAL                   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK--------------- 46

Query: 232 FGRK---KSLLK------VTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKM 281
            G     + LL       + D+ G+  IH AA  G       L ++  A  NI D +   
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL-LEFQADVNIEDNEGN- 104

Query: 282 TALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
             LHLAA  GH R VE ++          +++       A 
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.3 bits (176), Expect = 5e-15
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 34/147 (23%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSD 111
            T L +       +  + +            L+      + K   G   +H AA+ G  D
Sbjct: 39  RTALQV------MKLGNPEIAR--------RLLLRGANPDLKDRTGFAVIHDAARAGFLD 84

Query: 112 IVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS 170
            ++ L++  A             + + +N+ N  LH A   G++ VV+ L +        
Sbjct: 85  TLQTLLEFQAD------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLEN 197
            N  G T   +A     +++V  +  N
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.9 bits (131), Expect = 5e-09
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 9/115 (7%)

Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAP 304
               +  AA  G       L +      N  +   + TAL +    G+      +L    
Sbjct: 5   WGNELASAAARGDLEQLTSL-LQNNVNVNAQNGFGR-TALQVMK-LGNPEIARRLLLRGA 61

Query: 305 ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
              +L D   +  +H A  +  L  L+ LL     +  +N  D +GN PLH  AA
Sbjct: 62  N-PDLKDRTGFAVIHDAARAGFLDTLQTLLEF---QADVNIEDNEGNLPLH-LAA 111

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 41/222 (18%), Positives = 66/222 (29%), Gaps = 42/222 (18%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           V ++ +TP   AA+      +  L++               +  V+    TAL      G
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD------------VDAVDENGRTALLFVAGLG 88

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL 212
           + + V++L     D  +     G T L+MAA     ++V  L+E    +  E   G TAL
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148

Query: 213 HAAVMYFDFKGDHHAMRQL---FGRKKSLLKVT-------------------DQYGWTPI 250
             A             +     FGR+  L KV                       G    
Sbjct: 149 ELAREI-----LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203

Query: 251 HYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292
           +   +        +      A     KD +   L  A     
Sbjct: 204 YLVRWKDGGDCEWVK-GVHVA-EDVAKDYE-DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.4 bits (246), Expect = 9e-24
 Identities = 44/277 (15%), Positives = 74/277 (26%), Gaps = 53/277 (19%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           +   +G     +  K GHS         A    D           V ++  T    A   
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---D-----------VVSEYETPWWTAARK 55

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH-EGPNGKT 210
            + + +  L  ED D   + ++ G+T L   A   S   V  L E    L H +   G T
Sbjct: 56  ADEQALSQLL-EDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113

Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLK------VTDQYGWTPIHYAAYHGKYWINDL 264
           ALH A  Y         + +       L++      V D+ G T +  A    K      
Sbjct: 114 ALHMAAGY-----VRPEVVEA------LVELGADIEVEDERGLTALELAREILKTTPKGN 162

Query: 265 LEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS 324
             +      I  +   +  +       +A   E +             +  +  +     
Sbjct: 163 P-MQFGR-RIGLEK--VINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWK 209

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVR 361
                      +          D      L  +A   
Sbjct: 210 DGGDCEWVKGVH---VAEDVAKD--YEDGLE-YAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 88.0 bits (219), Expect = 3e-20
 Identities = 38/237 (16%), Positives = 66/237 (27%), Gaps = 35/237 (14%)

Query: 128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESES 187
           E  + +      +           G+       +    D         +TP + AA    
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKAD 57

Query: 188 SDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGW 247
              +  LLE+   +     NG+TAL          G    +R L      L     + G 
Sbjct: 58  EQALSQLLEDR-DVDAVDENGRTALLFVAGL----GSDKCVRLLAEAGADLDHRDMRGGL 112

Query: 248 TPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPEC 306
           T +H AA + +  + + L ++  A   + D+    TAL LA            +      
Sbjct: 113 TALHMAAGYVRPEVVEAL-VELGADIEVEDERGL-TALELAREILKTTPKGNPMQFG--- 167

Query: 307 FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARIL----INEGDAKGNTPLHVFAA 359
                               L+ +  +L            I E   KG    ++   
Sbjct: 168 ----------------RRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.5 bits (244), Expect = 3e-24
 Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 53/206 (25%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
               +H  A  G    +   I+     Q+        I   + +  T L  A   G + V
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE-----QENV------INHTDEEGFTPLMWAAAHGQIAV 51

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
           V+ L +   D P       ++ L +A     +D+V  LL+        G +         
Sbjct: 52  VEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDC-------GVD--------- 94

Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIA 275
                                 +   D  G TP+ YA +        +L ++  A   I 
Sbjct: 95  ----------------------VNEYDWNGGTPLLYAVHGNHVKCVKML-LESGADPTIE 131

Query: 276 DKDRKMTALHLAAGRGHARTVETILS 301
                  ++ LA   G+    + I S
Sbjct: 132 TDSGY-NSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 83  LEICPALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIR 135
           +      + Q   +N     G TPL  AA  G   +V  L+   A              +
Sbjct: 16  MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------PQ 63

Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
           ++   + +AL  A   G  ++VK+L     D     +  G TPL  A        V  LL
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 196 ENCTSLSHEGPNGKTALHAAVMY 218
           E+    + E  +G  ++  AV  
Sbjct: 123 ESGADPTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.7 bits (185), Expect = 4e-16
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 21/117 (17%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L+Q            ++ L +A   G++DIV++L+D                +   +  
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD------------VNEYDWN 101

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
             T L  A+   +++ VK+L     D P    D G   + +A       +   +  +
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 24/157 (15%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
               ++H        +G+   +      +++++  TD+ G+TP+ +AA HG+  + + L 
Sbjct: 2   ANSLSVHQLA----AQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFL- 55

Query: 267 IDQTAT-NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASF 325
           +   A   +  K R  +AL LA  +G+   V+ +L    +     D      L YAV   
Sbjct: 56  LQNGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGN 113

Query: 326 QLQDLKPLLRNPFARILI------NEGDAKGNTPLHV 356
            ++           ++L+            G   + +
Sbjct: 114 HVK---------CVKMLLESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 3e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
             ++H  A +G    + T +          D   +  L +A A  Q+  ++ LL+N    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN---G 59

Query: 341 ILINEGDAKGNTPLHVFAA 359
                      + L + A 
Sbjct: 60  ADPQLLGKGRESALSL-AC 77

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.3 bits (241), Expect = 5e-24
 Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 52/206 (25%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           +    L  AA  G    VR L+      ++           +N    TAL   MF G+  
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH-----RELVH-----PDALNRFGKTALQVMMF-GSTA 49

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           +   L ++    P   +  G +P++ AA +   D +  L+E+       G +        
Sbjct: 50  IALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEH-------GAD-------- 93

Query: 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIA 275
                                  + V D  G  PIH A   G   +   L   ++  +  
Sbjct: 94  -----------------------VNVPDGTGALPIHLAVQEGHTAVVSFL-AAESDLHRR 129

Query: 276 DKDRKMTALHLAAGRGHARTVETILS 301
           D     T L LA  RG    V+ +  
Sbjct: 130 DARGL-TPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.6 bits (182), Expect = 8e-16
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 55/186 (29%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRN---------TILHINIMCQDAENASTKFV 79
           L  AAA G+         + +  LL  +  +         T L +          ST   
Sbjct: 6   LSGAAARGD--------VQEVRRLLHRELVHPDALNRFGKTALQV------MMFGSTAIA 51

Query: 80  EEILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAAR 131
                     L++     N +   G +P+H AA+ G  D ++VL++  A           
Sbjct: 52  L--------ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---------- 93

Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTRE-DPDYPYSANDYGKTPLYMAAESESSDM 190
             + + +      +H A+  G+  VV  L  E D       +  G TPL +A +  + D+
Sbjct: 94  --VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDL 148

Query: 191 VLTLLE 196
           V  L  
Sbjct: 149 VDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.4 bits (179), Expect = 2e-15
 Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 44/183 (24%)

Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
           +    L  A   G+++ V+ L   +  +P + N +GKT L +     S+ + L LL+   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQ-- 57

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
                G +                                 V D  G +P+H AA  G  
Sbjct: 58  -----GAS-------------------------------PNVQDTSGTSPVHDAARTGFL 81

Query: 260 WINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFL 318
               +L ++  A  N+ D       +HLA   GH   V  + + +       D R    L
Sbjct: 82  DTLKVL-VEHGADVNVPDGTGA-LPIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPL 137

Query: 319 HYA 321
             A
Sbjct: 138 ELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 46/153 (30%)

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI 267
               L  A       GD   +R+L  R+       +++G T +    + G   I   L +
Sbjct: 2   AGDRLSGAAAR----GDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALEL-L 55

Query: 268 DQTAT-NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ 326
            Q A+ N+ D     + +H AA  G   T++ ++                          
Sbjct: 56  KQGASPNVQDTSGT-SPVHDAARTGFLDTLKVLVE------------------------- 89

Query: 327 LQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                           +N  D  G  P+H  A 
Sbjct: 90  ------------HGADVNVPDGTGALPIH-LAV 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 98.8 bits (247), Expect = 5e-24
 Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 28/203 (13%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKN--TALHDAMFPGN 153
           G   L    +          I    +               V         L D+   G 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR---------------VKFNPLPLALLLDSSLEGE 49

Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
            ++V+ +  E  D P   ND G T L+ A  +  +++V  L++   +++    +G T LH
Sbjct: 50  FDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108

Query: 214 AAVMYFDFKGDHHAMRQLF--GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
            A        +    + L   G     +  +D             G    +  L      
Sbjct: 109 CAASC----NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-YGVQE 163

Query: 272 -TNIADKDRKMTALHLAAGRGHA 293
              I +K     AL     +   
Sbjct: 164 KMGIMNKGVI-YALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 91  IQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           ++ N      L  ++  G  D+V+ +I                   + N++  TALH+A+
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD------------PSLPNDEGITALHNAV 78

Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE---NCTSLSHEGP 206
             G+ E+VK L +   +   +A+  G TPL+ AA   +  +   L+E      ++++   
Sbjct: 79  CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
                    +        +    Q     +  + + ++     +          +     
Sbjct: 138 QTAADKCEEMEE-----GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG 192

Query: 267 IDQTATNIADKDRKMTALHLAAGRGH 292
              T  +  D+D        A     
Sbjct: 193 DCMTIIHREDEDE--IEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 14/190 (7%)

Query: 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF 232
             G+  L     +         + +   +    P     L  + +          + Q  
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLE-----GEFDLVQRI 56

Query: 233 GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAAGRG 291
             +     + +  G T +H A   G   I   L +      N AD D   T LH AA   
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL-VQFGVNVNAADSDGW-TPLHCAASCN 114

Query: 292 HARTVETILSL--APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAK 349
           + +  + ++    A       D +        +     Q  + L      +  +   +  
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV---QEKMGIMNKG 171

Query: 350 GNTPLHVFAA 359
               L  +  
Sbjct: 172 VIYALWDYEP 181

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 51/180 (28%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAARQMIRM 136
            L+Q    VNA    G TPLH AA   +  + + L++      A    D   A       
Sbjct: 88  FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA------- 140

Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
                     + M  G  +  + L           N      L+        ++ +   +
Sbjct: 141 ------ADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD 193

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
             T + H     +     A                        ++ D+ G+ P +    +
Sbjct: 194 CMTII-HREDEDEIEWWWA------------------------RLNDKEGYVPRNLLGLY 228

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 19/123 (15%)

Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           +  G   +                I      +      +  L  ++  G    V+ I+  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSER-IAHGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI------NEGDAKGNTPLHV 356
             +   L ++     LH AV +   +           + L+      N  D+ G TPLH 
Sbjct: 60  VDD-PSLPNDEGITALHNAVCAGHTE---------IVKFLVQFGVNVNAADSDGWTPLH- 108

Query: 357 FAA 359
            AA
Sbjct: 109 CAA 111

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 57/212 (26%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
            N++ D  L  AAK G  + V+ L       Q  +       R +  +++T LH A    
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV----QSVN------CRDIEGRQSTPLHFAAGYN 53

Query: 153 NMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
            + VV+ L +   D     + +  G  PL+ A      ++   L+++       G     
Sbjct: 54  RVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKH-------GAV--- 100

Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270
                                       + V D + +TP+H AA  GKY I  LL +   
Sbjct: 101 ----------------------------VNVADLWKFTPLHEAAAKGKYEICKLL-LQHG 131

Query: 271 A-TNIADKDRKMTALHLAAGRGHARTVETILS 301
           A     ++D   T L L    G     + +  
Sbjct: 132 ADPTKKNRDGN-TPLDLVK-DGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.0 bits (183), Expect = 7e-16
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 70/199 (35%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN-------GKTALHAAVMYFDFKGD 224
           N      L  AA++   + V  L       + +  N         T LH A  Y     +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC------TVQSVNCRDIEGRQSTPLHFAAGY-----N 53

Query: 225 HHAMRQLFGRKKSLLK------VTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADK 277
             ++ +       LL+        D+ G  P+H A  +G Y + +LL +   A  N+AD 
Sbjct: 54  RVSVVEY------LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL-VKHGAVVNVADL 106

Query: 278 DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNP 337
            +  T LH AA +G     + +L                  H A              + 
Sbjct: 107 WKF-TPLHEAAAKGKYEICKLLLQ-----------------HGA--------------D- 133

Query: 338 FARILINEGDAKGNTPLHV 356
                  + +  GNTPL +
Sbjct: 134 -----PTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 19/124 (15%)

Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD-RKMTALHLAAGRGHARTVETILS 301
           +      +  AA  G       L     + N  D + R+ T LH AAG      VE +L 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKL-CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 302 LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI------NEGDAKGNTPLH 355
              +     D      LH A  S+   ++        A +L+      N  D    TPLH
Sbjct: 64  HGAD-VHAKDKGGLVPLHNA-CSYGHYEV--------AELLVKHGAVVNVADLWKFTPLH 113

Query: 356 VFAA 359
             AA
Sbjct: 114 -EAA 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 95.9 bits (240), Expect = 1e-23
 Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 53/214 (24%)

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDA 148
                 +     L  AA+ G  D VR+L+         D      +   +    T LH A
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMA-----NGAD------VNAEDASGWTPLHLA 54

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
            F G++E+V++L +   D   + +  G TPL +AA     ++V  LL+N       G + 
Sbjct: 55  AFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKN-------GAD- 105

Query: 209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEID 268
                                         +   D  G TP+H AA  G   I ++L + 
Sbjct: 106 ------------------------------VNANDMEGHTPLHLAAMFGHLEIVEVL-LK 134

Query: 269 QTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
             A  N  DK  K TA  ++   G+    E +  
Sbjct: 135 NGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 39/160 (24%), Positives = 55/160 (34%), Gaps = 46/160 (28%)

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
             H G +    L  A              ++     + +   D  GWTP+H AA++G   
Sbjct: 7   HHHHGSDLGKKLLEAARA-----GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH 319
           I ++L +   A  N  D     T L LAA  GH   VE +L                  +
Sbjct: 62  IVEVL-LKNGADVNAVDHAGM-TPLRLAALFGHLEIVEVLLK-----------------N 102

Query: 320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
            A       D             +N  D +G+TPLH  AA
Sbjct: 103 GA-------D-------------VNANDMEGHTPLH-LAA 121

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 33/226 (14%)

Query: 92  QVNAK------GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTA 144
                          L  AA  G  ++V+  +                     N +  TA
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND------------PSQPNEEGITA 57

Query: 145 LHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202
           LH+A+   N  +V  L     + +   S + +G TPL+ AA    + + + L+++  ++ 
Sbjct: 58  LHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 203 HEGPN-GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
               + G TA      Y   +  +          +  + + +      +   +       
Sbjct: 115 ATTLSDGATAFEKCDPY---REGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---G 168

Query: 262 NDLLEIDQTATNIADKDRK-MTALHLAAGRGHARTVE-TILSLAPE 305
           ++L   +  +  +  +D    T    AA  G    V      L P 
Sbjct: 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 36/232 (15%), Positives = 61/232 (26%), Gaps = 55/232 (23%)

Query: 137 VNNKKN------TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
               +         L DA   G +EVV+   +E  D P   N+ G T L+ A    +  +
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSI 69

Query: 191 VLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI 250
           V  L+    +++    +G T LH A        D      L     ++   T   G T  
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASC----NDTVICMALVQHGAAIFATTLSDGATAF 125

Query: 251 HYAAYHGKYWINDLLE--IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECF 307
                + + +  D      D      + +    + AL   +        E          
Sbjct: 126 EKCDPYREGYA-DCATYLADVEQSMGLMNSGA-VYALWDYSAEFGD---ELSFREG---- 176

Query: 308 ELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                                            + +   D    T    +AA
Sbjct: 177 -------------------------------ESVTVLRRDGPEETDWW-WAA 196

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 93.2 bits (233), Expect = 6e-23
 Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 56/203 (27%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
               L  AA+ G  D VR+L+   A    D                 + LH A   G+  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD-------------WLGTSPLHLAAQYGHFS 48

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
             ++L R       +     +TPL+MAA    +++V  LL++       G +        
Sbjct: 49  TTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKH-------GAD-------- 92

Query: 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNI 274
                                  +   D    T +H+A  H    + +LL I   A  + 
Sbjct: 93  -----------------------VNAKDMLKMTALHWATEHNHQEVVELL-IKYGADVHT 128

Query: 275 ADKDRKMTALHLAAGRGHARTVE 297
             K  K TA  ++   G+    E
Sbjct: 129 QSKFCK-TAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 39/192 (20%), Positives = 56/192 (29%), Gaps = 59/192 (30%)

Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPN------GKTALHAAVMYFDFKGDHHAM 228
               L  AA +   D V  L+ N       G        G + LH A  Y      H + 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMAN-------GAPFTTDWLGTSPLHLAAQY-----GHFST 49

Query: 229 RQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLA 287
            ++  R         +   TP+H AA  G   I ++L +   A  N  D   KMTALH A
Sbjct: 50  TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL-LKHGADVNAKDML-KMTALHWA 107

Query: 288 AGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD 347
               H   VE ++                  + A       D             ++   
Sbjct: 108 TEHNHQEVVELLIK-----------------YGA-------D-------------VHTQS 130

Query: 348 AKGNTPLHVFAA 359
               T     + 
Sbjct: 131 KFCKTAFD-ISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 8e-15
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 49/178 (27%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTL-------QTRNTILHINIMCQDAENASTKFVEE 81
           LL+AA  G          + +  L+             + LH+      A+       E 
Sbjct: 6   LLEAARAGQ--------DDEVRILMANGAPFTTDWLGTSPLHL-----AAQYGHFSTTE- 51

Query: 82  ILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQM 133
                  +L++     +A+     TPLH+AA  GH++IV VL+   A             
Sbjct: 52  -------VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD------------ 92

Query: 134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
           +   +  K TALH A    + EVV++L +   D  ++ + + KT   ++ ++ + D+ 
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA 149

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 98.1 bits (244), Expect = 1e-22
 Identities = 38/251 (15%), Positives = 77/251 (30%), Gaps = 28/251 (11%)

Query: 71  AENASTKFVEEI--LEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDE 128
           A    +  ++ +  L     ++  + A+      +AA+ GH  ++  L +          
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--------- 150

Query: 129 AARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS-ANDYGKTPLYMAAESES 187
           A  +++ M+  +   A   A   G++ V+  L    P    +            AA    
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 188 -SDMVLTLLENCTSLSHEGPNGKTALHAAVMYF------DFKGDHHAMRQ--LFGRKKSL 238
             +++  LL+    L++   +        V  F        K  H A +     G    +
Sbjct: 211 HHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 270

Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNI---ADKDRK----MTALHLAAGRG 291
            K     G+  +          + D +    +   I   A            L LA   G
Sbjct: 271 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

Query: 292 HARTVETILSL 302
           +      +LS+
Sbjct: 331 NQGACALLLSI 341

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 23/197 (11%), Positives = 42/197 (21%), Gaps = 52/197 (26%)

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMR 229
              +  +    +       +     L   +    +G   +     A +            
Sbjct: 56  GTKNMEQVRQLLCLYYAHYNRNAKQL--WSDAHKKGIKSEVICFVAAITG--CSSALDTL 111

Query: 230 QLFGRKKSLLKVTDQYGWTPIHYAAYHG-----KYWINDLLEI--DQTATNIADKDRKMT 282
            L      ++KV     +     AA +G           L E+   +    I  ++    
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR----LCELAPTEIMAMIQAENY--H 165

Query: 283 ALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARIL 342
           A  LAA  GH   +  +  LAP                                      
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPT-----------------------------------EA 190

Query: 343 INEGDAKGNTPLHVFAA 359
                A+        A 
Sbjct: 191 TAMIQAENYYAFRWAAV 207

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.8 bits (229), Expect = 4e-22
 Identities = 35/214 (16%), Positives = 62/214 (28%), Gaps = 58/214 (27%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           +   +G     +  K GHS                 +        V ++  T    A   
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI------AAD--------VVSEYETPWWTAARK 54

Query: 152 GNMEVVKILTRE-DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
            + + +  L  + D D   + ++ G+T L   A   S   V  L E        G     
Sbjct: 55  ADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEA-------G----- 99

Query: 211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270
              A + + D +                       G T +H AA + +  + + L ++  
Sbjct: 100 ---ADLDHRDMR----------------------GGLTALHMAAGYVRPEVVEAL-VELG 133

Query: 271 A-TNIADKDRKMTALHLAAGRGHARTVETILSLA 303
           A   + D+    TAL LA            +   
Sbjct: 134 ADIEVEDERGL-TALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 32/162 (19%)

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN----GKTALHAAVMYFDFKGDHH 226
               G     +  +   S   +              +     +T    A           
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYI-------AADVVSEYETPWWTAARK-----ADE 57

Query: 227 AMRQLFGRKKSLLK-----VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK- 280
                      LL+       D+ G T + + A  G      LL  +  A ++  +D + 
Sbjct: 58  QALSQ------LLEDRDVDAVDENGRTALLFVAGLGSDKCVRLL-AEAGA-DLDHRDMRG 109

Query: 281 -MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
            +TALH+AAG      VE ++ L  +  E+ D R    L  A
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 11/126 (8%)

Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR 294
            K +   T   G          G             A ++  +    T    AA +   +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPS-SYIAA-DVVSEYE--TPWWTAARKADEQ 58

Query: 295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAK-GNTP 353
            +  +L       + VD      L +       + ++ L         ++  D + G T 
Sbjct: 59  ALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEA---GADLDHRDMRGGLTA 113

Query: 354 LHVFAA 359
           LH  AA
Sbjct: 114 LH-MAA 118

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 35/107 (32%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILH-INIMCQDAEN-------ASTKFVE 80
           LL  A  G+ +         +  L             ++  +D          A+     
Sbjct: 80  LLFVAGLGSDK--------CVRLL--------AEAGADLDHRDMRGGLTALHMAAGYVRP 123

Query: 81  EILEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRA 120
           E++E     L++    +  +   G T L +A +   +      +   
Sbjct: 124 EVVE----ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.0 bits (214), Expect = 3e-20
 Identities = 32/206 (15%), Positives = 53/206 (25%), Gaps = 64/206 (31%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM 154
                L  AA  G  + VR L++  A                 N+     +   M  G+ 
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN------------PNAPNSYGRRPIQVMMM-GSA 57

Query: 155 EVVKILTRE--DPDYPYSANDYGKT-PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
            V ++L     +P+    A+    T P++ AA     D ++ L          G      
Sbjct: 58  RVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRA-------GAR---- 103

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
                                      L V D +G  P+  A   G   +   L      
Sbjct: 104 ---------------------------LDVRDAWGRLPVDLAEELGHRDVARYL-RAAA- 134

Query: 272 TNIADKDRKMTALHLAAGRGHARTVE 297
                         + A  G +   +
Sbjct: 135 ---GGTRGS-NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 31/143 (21%)

Query: 83  LEICPALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMI 134
           +E   ALL      NA    G  P+ V    G + +  +L+   A+    D         
Sbjct: 25  VEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCAD--------- 74

Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVL 192
                     +HDA   G ++ + +L R     D     + +G+ P+ +A E    D+  
Sbjct: 75  ---PATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVAR 128

Query: 193 TLLENCTSLSHEGPNGKTALHAA 215
            L          G  G       
Sbjct: 129 YLRAAAG-----GTRGSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 21/153 (13%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
                L  A      +G      +      +     + YG  PI      G   + +LL 
Sbjct: 11  PSADWLATAA----ARG-RVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELL- 63

Query: 267 IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNRRWNFLHYAVAS 324
           +   A  N AD       +H AA  G   T+  +    A    ++ D      +  A   
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA--RLDVRDAWGRLPVDLAEEL 121

Query: 325 FQLQDLKPLLRNPFARILINEG-DAKGNTPLHV 356
                         AR L       +G+    +
Sbjct: 122 GHRD---------VARYLRAAAGGTRGSNHARI 145

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.6 bits (130), Expect = 6e-09
 Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAAGRGHARTVETI 299
            + +     +  AA  G+      L ++  A  N  +       + +    G AR  E +
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRAL-LEAGANPNAPNSY-GRRPIQVMM-MGSARVAELL 63

Query: 300 LSLA--PECFELVDNRRWNF-LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           L     P C    D       +H A     L  L  L R   AR  ++  DA G  P+ +
Sbjct: 64  LLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAG-AR--LDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 22/81 (27%)

Query: 83  LEICPALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM 136
           L+    L      ++ +   G  P+ +A + GH D+ R L   A                
Sbjct: 91  LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA---------------- 134

Query: 137 VNNKKNTALHDAMFPGNMEVV 157
              + +         G  ++ 
Sbjct: 135 GGTRGSNHARIDAAEGPSDIP 155

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.5 bits (219), Expect = 1e-19
 Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 36/265 (13%)

Query: 46  REVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD----TPL 101
           +E+  SL    +       +   Q    +    ++E+ +  P   + +N   D    TPL
Sbjct: 76  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135

Query: 102 HVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGN---MEVV 157
           H      + ++V+ L+   +                 +N   + L  A+   N       
Sbjct: 136 HWLTSIANLELVKHLVKHGSN------------RLYGDNMGESCLVKAVKSVNNYDSGTF 183

Query: 158 KILTREDPDYPYSANDYGKTPLYMAAESESSD------------MVLTLLENCTSLSHEG 205
           + L           +   +T L+    +                ++  +++        G
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 243

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
            N K +                +        ++L   D  G T ++ AA  G   I D L
Sbjct: 244 TNEKESKPNDKNGERKDSILENLDLK-WIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

Query: 266 EIDQTA-TNIADKDRKMTALHLAAG 289
            +D  A   IA+K      +   AG
Sbjct: 303 -LDYGADPFIANKSGL-RPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 2e-17
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 20/237 (8%)

Query: 138 NNKKNTALHDAMFPGNM-EVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
               N       F   + EV         +     +++G TPL+      + ++V  L++
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
           + ++  +    G++ L  AV   +   D      L       L + D    T +H+    
Sbjct: 153 HGSNRLYGDNMGESCLVKAVKSVNNY-DSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211

Query: 257 G---------KYWINDLLE--IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
                     KY+++ L+   + +    I     +  +           ++   L L   
Sbjct: 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 306 CFELV---DNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
              ++   D+     L+ A     +  +  LL            +  G  P+  F A
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 20/169 (11%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLL-TLQTRN----TILHINIM------CQDAENASTK 77
           L+KA    N          +++ L   L   +    TILH  I+      C  A      
Sbjct: 168 LVKAVKSVNNYDSGTFE-ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 78  FVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137
            +   +       IQ                  D +   +D   +          M+   
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA-------NMLNAQ 279

Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
           ++  +T L+ A   GN+ +V  L     D P+ AN  G  P+   A  E
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGAGLE 327

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.2 bits (206), Expect = 7e-19
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 32/201 (15%)

Query: 94  NAKGD-TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM--- 149
           NA  +   +  AA  G  +    L ++      G E         +  K+  L+D +   
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK------GYEDK------ESVLKSNILYDVLRNN 49

Query: 150 -FPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLT------LLENCTS 200
                 ++   L  +  D     S    G T  +   +   +D+  T       LE    
Sbjct: 50  NDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD 106

Query: 201 LSHEGPNGKTALHAAVMY--FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK 258
           ++      K  +   +     D        + +F +    L + D++G T + +     K
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166

Query: 259 YWINDLLEIDQTA-TNIADKD 278
                ++  D     N+ +  
Sbjct: 167 PIALKMM-EDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 81.3 bits (201), Expect = 3e-18
 Identities = 17/178 (9%), Positives = 47/178 (26%), Gaps = 25/178 (14%)

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESS-----DMVLTLL 195
           +   +  A   G  E    L  +  +         K+ +       ++      + + L+
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK------VTDQYGWTP 249
                +      G T               + +       K  L+         +     
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQG-----GGNDITGTTELCKIFLEKGADITALYKPYKIV 117

Query: 250 IHYAAYHGKYWINDLLEI-----DQTATNIADKDRK-MTALHLAAGRGHARTVETILS 301
           +    ++     N+++ +      Q+   +  KD+  +TAL           ++ +  
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 25/196 (12%), Positives = 46/196 (23%), Gaps = 41/196 (20%)

Query: 171 ANDYGK-TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMR 229
           +N   +   +  AA   + +  L L E               L+  +   + +   + + 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESV-LKSNILYDVLRNNNDEA-RYKIS 58

Query: 230 QLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE-----IDQTA-TNIADKDRKMTA 283
                K + +K   + G T        G   I    E     +++ A      K  K   
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK-IV 117

Query: 284 LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI 343
           +            E I                               K +      ++  
Sbjct: 118 VFKNIFNYFVDENEMIPLY----------------------------KLIFSQSGLQL-- 147

Query: 344 NEGDAKGNTPLHVFAA 359
              D  G T L  F  
Sbjct: 148 LIKDKWGLTALE-FVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 32/184 (17%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPA 88
           +  AA  G  E F ++  +  E   +   ++ IL+  +      N + +   +I      
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKES-VLKSNILYDVLR-----NNNDEARYKISM---- 59

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDRAKLAQDG-DEAARQMIRMVNNK 140
            LI     + ++   G T      + G +DI           + G D      I  +   
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD------ITALYKP 113

Query: 141 KNTALHDAMFPGNMEVVK-------ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLT 193
               +   +F   ++  +       I ++         + +G T L      +    +  
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 194 LLEN 197
           + + 
Sbjct: 173 MEDY 176

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.7 bits (198), Expect = 2e-18
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 22/128 (17%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAARQMIRMVNNKKNTALHD 147
           + +  D     A K G  D V+  + +                              LH 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT----------------LEGGRKPLHY 46

Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN 207
           A   G +E+++ L  +  D   + + +  TPL  A        V  LL      + +GP+
Sbjct: 47  AADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105

Query: 208 GKTALHAA 215
           G TA  A 
Sbjct: 106 GLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 58/170 (34%)

Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           + +  +     A+  G+++ VK    +  D      + G+ PL+ AA+    +++  LL 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 197 NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH 256
                   G +                               +   D++  TP+  A Y 
Sbjct: 62  K-------GAD-------------------------------INAPDKHHITPLLSAVYE 83

Query: 257 G-----KYWINDLLEIDQTATNIADKDRK----MTALHLAAGRGHARTVE 297
           G     K     LL         ADK  K    +TA      +     ++
Sbjct: 84  GHVSCVKL----LLSKG------ADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV------TDQYGWTPIHYAAYHGK 258
           G         A+      GD   +       K  +        T + G  P+HYAA  G+
Sbjct: 4   GSMCDKEFMWAL----KNGDLDEV-------KDYVAKGEDVNRTLEGGRKPLHYAADCGQ 52

Query: 259 YWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
             I + L + + A  N  DK    T L  A   GH   V+ +LS
Sbjct: 53  LEILEFL-LLKGADINAPDKHHI-TPLLSAVYEGHVSCVKLLLS 94

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 20/124 (16%), Positives = 26/124 (20%), Gaps = 57/124 (45%)

Query: 245 YGWTPIHYAAYHG-----KYWINDLLEIDQTATNIADKDRK----MTALHLAAGRGHART 295
                  +A  +G     K      +          D +R        LH AA  G    
Sbjct: 6   MCDKEFMWALKNGDLDEVKD----YVAKG------EDVNRTLEGGRKPLHYAADCGQLEI 55

Query: 296 VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLH 355
           +E +L                    A                     IN  D    TPL 
Sbjct: 56  LEFLLL-----------------KGA--------------------DINAPDKHHITPLL 78

Query: 356 VFAA 359
             A 
Sbjct: 79  -SAV 81

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 78.2 bits (194), Expect = 9e-18
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 22/130 (16%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAARQMIRMVNNKKNTALHDA 148
           N +G+T LH+A+  G    V  L+        K                ++   T LH+A
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK----------------DHAGWTPLHEA 50

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
              G+++VV++L +       +      +PL+ AA++   D+V  LL    S +     G
Sbjct: 51  CNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

Query: 209 KTALHAAVMY 218
              +      
Sbjct: 110 LRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.5 bits (192), Expect = 2e-17
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 21/117 (17%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L+Q     N K   G TPLH A   GH  +V +L+   A             +     +
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------------VNTTGYQ 75

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
            ++ LHDA   G++++VK+L         + N +G  P+    +     ++L   +N
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
            N  G+T L++A+       V  LL+N +  + +   G T LH A  +      H  + +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-----GHLKVVE 60

Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAG 289
           L  + K+L+  T     +P+H AA +G   I  LL +   A  N  +       +     
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL-LSYGASRNAVNIFGL-RPVDYTDD 118

Query: 290 RGHARTVETILS 301
                 +     
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 240 KVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAAGRGHARTVET 298
             T+  G T +H A+  G     + L +   +  N+ D     T LH A   GH + VE 
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYL-LQNGSDPNVKDHAGW-TPLHEACNHGHLKVVEL 61

Query: 299 ILSL-APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           +L   A         +  + LH A  +  +  +K LL         N  +  G  P+  
Sbjct: 62  LLQHKA--LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.3 bits (106), Expect = 8e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 273 NIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNRRWNFLHYAVASFQLQDLK 331
           +     R  T LH+A+ +G   +VE +L   +     + D+  W  LH A     L+ ++
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 332 PLLRNPFARILINEGDAKGNTPLHVFAA 359
            LL++   + L+N    + ++PLH  AA
Sbjct: 61  LLLQH---KALVNTTGYQNDSPLH-DAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 8/42 (19%)

Query: 83  LEICPALLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLI 117
           ++I   LL+      NA    G  P+          ++ +  
Sbjct: 89  VDIV-KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 23/133 (17%)

Query: 93  VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDA 148
           ++      D  L  AA  G  + VR L++  A                +N      +   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------PNALNRFGRRPIQVM 52

Query: 149 MFPGNMEVVKILTRE--DPDYPYSANDYGKT-PLYMAAESESSDMVLTLLENCTSLSHEG 205
           M  G+ +V ++L     +P+    A+    T P++ AA     D ++ L      L    
Sbjct: 53  MM-GSAQVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108

Query: 206 PNGKTALHAAVMY 218
             G+  +  A   
Sbjct: 109 AWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 22/139 (15%)

Query: 171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
                   L  AA     + V  LLE     +     G+  +   +M          + +
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------GSAQVAE 61

Query: 231 LFGRKKSLLK------VTDQYGWT-PIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMT 282
           L      LL         D    T P+H AA  G      +L     A  ++ D      
Sbjct: 62  L------LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL-HRAGARLDVCDAW-GRL 113

Query: 283 ALHLAAGRGHARTVETILS 301
            + LA  +GH      + +
Sbjct: 114 PVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.5 bits (174), Expect = 5e-15
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 22/123 (17%)

Query: 83  LEICPALLIQ---VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMI 134
           +E    LL      NA    G  P+ V    G + +  +L+   A+    D         
Sbjct: 25  VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD--------- 74

Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
                     +HDA   G ++ + +L R         + +G+ P+ +A E    D+   L
Sbjct: 75  ---PATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYL 130

Query: 195 LEN 197
              
Sbjct: 131 HAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 45/151 (29%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
           +    L  A      +G      +      +     +++G  PI      G   + +LL 
Sbjct: 11  SSDAGLATAA----ARG-QVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELL- 63

Query: 267 IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASF 325
           +   A  N AD       +H AA  G   T+  +                     A A  
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-------------------AGAR- 103

Query: 326 QLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                            ++  DA G  P+ +
Sbjct: 104 -----------------LDVCDAWGRLPVDL 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.5 bits (187), Expect = 7e-17
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 26/129 (20%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDR-----AKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           G TPLH+AA+ GH ++V++L++      AK                +    T LH A   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK----------------DKNGRTPLHLAARN 45

Query: 152 GNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
           G++EVVK+L     D +   + +  G+TPL++AA +   ++V  LLE    ++ +  NG+
Sbjct: 46  GHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102

Query: 210 TALHAAVMY 218
           T LH A   
Sbjct: 103 TPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 70.8 bits (175), Expect = 3e-15
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 20/134 (14%)

Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
           G+TPL++AA +   ++V  LLE    ++ +  NG+T LH A         H  + +L   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-----GHLEVVKL--- 53

Query: 235 KKSLLKV------TDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLA 287
              LL+        D+ G TP+H AA +G   +  LL ++  A  N  DK+ + T LHLA
Sbjct: 54  ---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGR-TPLHLA 108

Query: 288 AGRGHARTVETILS 301
           A  GH   V+ +L 
Sbjct: 109 ARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 70.8 bits (175), Expect = 4e-15
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 21/117 (17%)

Query: 89  LLI----QVNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL+     VNAK   G TPLH+AA+ GH ++V++L++  A +      A        +  
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-----NAK-------DKN 67

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
             T LH A   G++EVVK+L     D   + +  G+TPL++AA +   ++V  LLE 
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 26/105 (24%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRK---KSLLKV------TDQYGWTPIHYAAYHG 257
           NG+T LH A                 G     K LL+        D+ G TP+H AA +G
Sbjct: 1   NGRTPLHLAARN--------------GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46

Query: 258 KYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
              +  LL ++  A  N  DK+ + T LHLAA  GH   V+ +L 
Sbjct: 47  HLEVVKLL-LEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE 89

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 93  VNAK-GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMF 150
             +K G+TPLH AAK GH++ V+ L+ + A             +   +   NT LH A  
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNARSKDGNTPLHLAAK 51

Query: 151 PGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT 210
            G+ E+VK+L  +  D   + +  G TP ++A ++   ++V  L      ++        
Sbjct: 52  NGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSH 110

Query: 211 ALH 213
             H
Sbjct: 111 HHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 21/100 (21%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
            L+     VNA+   G+TPLH+AAK GH++IV++L+ + A             +   +  
Sbjct: 27  KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD------------VNARSKD 74

Query: 141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLY 180
            NT  H A   G+ E+VK+L  +  D   + +       +
Sbjct: 75  GNTPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 21/121 (17%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV------TDQYGWTPIHYAAYHGKYW 260
           +G T LH A         H    +       LL          + G TP+H AA +G   
Sbjct: 8   DGNTPLHNAAKN-----GHAEEVKK------LLSKGADVNARSKDGNTPLHLAAKNGHAE 56

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH 319
           I  LL + + A  N   KD   T  HLA   GH   V+ + +   +          +  H
Sbjct: 57  IVKLL-LAKGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

Query: 320 Y 320
           +
Sbjct: 114 H 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.2 bits (142), Expect = 7e-11
 Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 19/123 (15%)

Query: 240 KVTDQYGWTPIHYAAYHGKYWINDLLEIDQTAT-NIADKDRKMTALHLAAGRGHARTVET 298
               + G TP+H AA +G       L + + A  N   KD   T LHLAA  GHA  V+ 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKL-LSKGADVNARSKDGN-TPLHLAAKNGHAEIVKL 60

Query: 299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI------NEGDAKGNT 352
           +L+   +             H A  +   +           ++L       N      + 
Sbjct: 61  LLAKGAD-VNARSKDGNTPEHLAKKNGHHE---------IVKLLDAKGADVNARSWGSSH 110

Query: 353 PLH 355
             H
Sbjct: 111 HHH 113

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 90  LIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDA 148
                +     L  AA+ G  D VR+L+   A             +   +    T L+ A
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGAD------------VNAKDEYGLTPLYLA 54

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
              G++E+V++L +   D   + +  G TPL++AA     ++   LL++   ++ +   G
Sbjct: 55  TAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113

Query: 209 KTALHAAVMY 218
           KTA   ++  
Sbjct: 114 KTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 42/161 (26%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
              L +A   G  + V+IL     D   + ++YG TPLY+A      ++V  LL+N    
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKN---- 69

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
              G +                               +   D  G+TP+H AA+ G   I
Sbjct: 70  ---GAD-------------------------------VNAVDAIGFTPLHLAAFIGHLEI 95

Query: 262 NDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
            ++L +   A  N  DK  K TA  ++ G G+    E +  
Sbjct: 96  AEVL-LKHGADVNAQDKFGK-TAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.0 bits (165), Expect = 1e-13
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 42/150 (28%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLI----QVNAK---GDTPLHVAAKFGHSD 111
              L        A       V         +L+     VNAK   G TPL++A   GH +
Sbjct: 15  GKKLLEA-----ARAGQDDEVR--------ILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 112 IVRVLIDR-----AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD 166
           IV VL+       A                 +    T LH A F G++E+ ++L +   D
Sbjct: 62  IVEVLLKNGADVNAV----------------DAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105

Query: 167 YPYSANDYGKTPLYMAAESESSDMVLTLLE 196
              + + +GKT   ++  + + D+   L +
Sbjct: 106 -VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 46/160 (28%)

Query: 201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYW 260
             H G +    L  A              ++     + +   D+YG TP++ A  HG   
Sbjct: 7   HHHHGSDLGKKLLEAARA-----GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 261 INDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLH 319
           I ++L +   A  N  D     T LHLAA  GH    E +L                  H
Sbjct: 62  IVEVL-LKNGADVNAVDAIGF-TPLHLAAFIGHLEIAEVLLK-----------------H 102

Query: 320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
            A              +      +N  D  G T     + 
Sbjct: 103 GA--------------D------VNAQDKFGKTAFD-ISI 121

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 89  LLIQ----VNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNT 143
            L+     + +     L  AA+ G  D VR+L+   A             +   +   +T
Sbjct: 12  GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD------------VAAKDKNGST 59

Query: 144 ALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
            LH A   G++EVVK+L     D   + + +GKT   ++ ++ + D+   L
Sbjct: 60  PLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 3e-13
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 104 AAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR 162
            +   H      L+ R +                + +     L +A   G  + V+IL  
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---------------MGSDLGKKLLEAARAGQDDEVRILMA 45

Query: 163 EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
              D   + +  G TPL++AA +   ++V  LLE    +  +   GKTA   ++  
Sbjct: 46  NGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
               +  AA  G+     +L +   A     DK+   T LHLAA  GH   V+ +L 
Sbjct: 24  LGKKLLEAARAGQDDEVRIL-MANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLLE 78

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 45/149 (30%)

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
            +      L                  L  AA +   D V  L+ N       G +    
Sbjct: 5   HHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMAN-------GAD---- 49

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
                                      +   D+ G TP+H AA +G   +  LL ++  A
Sbjct: 50  ---------------------------VAAKDKNGSTPLHLAARNGHLEVVKLL-LEAGA 81

Query: 272 TNIADKDRK-MTALHLAAGRGHARTVETI 299
            ++  +D+   TA  ++   G+    E +
Sbjct: 82  -DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 14/102 (13%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           G TPLH+AA+ GH ++V++L++  A             +   +    T LH A   G++E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLE 49

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
           VVK+L     D   + +  G+TPL++AA +   ++V  LLE 
Sbjct: 50  VVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.1 bits (142), Expect = 4e-11
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
           NG+T LH A         H  + +L     + +   D+ G TP+H AA +G   +  LL 
Sbjct: 1   NGRTPLHLAARN-----GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL- 54

Query: 267 IDQTA-TNIADKDRKMTALHLAAGRGHARTVETILS 301
           ++  A  N  DK+ + T LHLAA  GH   V+ +L 
Sbjct: 55  LEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 6e-10
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 20/80 (25%)

Query: 89  LLI----QVNAK---GDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNK 140
           LL+     VNAK   G TPLH+AA+ GH ++V++L++  A    D +          +  
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAK--------DKN 67

Query: 141 KNTALHDAMFPGNMEVVKIL 160
             T LH A   G++EVVK+L
Sbjct: 68  GRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 2e-07
 Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 41/115 (35%)

Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETILSLAP 304
           G TP+H AA +G   +  LL ++  A  N  DK+ + T LHLAA  GH   V+ +L    
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-LEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE--- 56

Query: 305 ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                           A       D             +N  D  G TPLH  AA
Sbjct: 57  --------------AGA-------D-------------VNAKDKNGRTPLH-LAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.5 bits (104), Expect = 5e-06
 Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 7/37 (18%)

Query: 89  LLIQ----VNAK---GDTPLHVAAKFGHSDIVRVLID 118
           LL++    VNAK   G TPLH+AA+ GH ++V++L++
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 7e-09
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           L     L++     +TALH AV   D    H  +     +    L      G T +HY  
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLH--IVDFLVQNSGNLDKQTGKGSTALHYCC 213

Query: 255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLA 303
                    LL   + +  IA++  + T L +A    H    E +L+ A
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGE-TPLDIAKRLKHE-HCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
             +T LH+A +      + ++     L Q+        +     K +TALH      N E
Sbjct: 168 PDETALHLAVRSVDRTSLHIV---DFLVQNSGN-----LDKQTGKGSTALHYCCLTDNAE 219

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
            +K+L R        AN+ G+TPL +A   +       LL    S       G+   H  
Sbjct: 220 CLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCE-ELLTQALS-------GRFNSHVH 270

Query: 216 VMY 218
           V Y
Sbjct: 271 VEY 273

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
            T LH+    +  +  S   V+ +++     L +   KG T LH      +++ +++L+ 
Sbjct: 170 ETALHL--AVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 119 RAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
                       +  I + N    T L  A    +    ++L
Sbjct: 227 G-----------KASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 121 KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLY 180
           K   D       +   V  +    L  A   G       LT + P    + ++  +T L+
Sbjct: 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVD-----LTEKIP--LANGHEPDETALH 174

Query: 181 MAAESESSD---MVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS 237
           +A  S       +V  L++N  +L  +   G TALH   +      D+    +L  R K+
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-----DNAECLKLLLRGKA 229

Query: 238 LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT 270
            +++ ++ G TP+  A         +LL    +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 282 TALHLAAGRGHARTVETI--LSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFA 339
           TALHLA       ++  +  L       +    +    LHY   +   + LK LLR    
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG--- 227

Query: 340 RILINEGDAKGNTPLHV 356
           +  I   +  G TPL +
Sbjct: 228 KASIEIANESGETPLDI 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 49/400 (12%), Positives = 113/400 (28%), Gaps = 135/400 (33%)

Query: 37  NAEPFKDMAREVI------ESLLTL---QTRNTILHINIMCQ-----------DAENAST 76
                +   R ++        LL L   Q        N+ C+           D  +A+T
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 77  KFV------------EEILEIC-----------PALLIQVNAKGDTPLHVA--AKFGHSD 111
                          +E+  +            P  ++  N     P  ++  A+     
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLSIIAESIRDG 340

Query: 112 IVRVLIDRAKLAQDGDEAARQMIRM-VNNKKNTALHD-----AMFPGNMEVVKI----LT 161
           +     D  K      +    +I   +N  +           ++FP +     I    L+
Sbjct: 341 LAT--WDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLS 393

Query: 162 REDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDF 221
                            ++         +V+  L   + +  +      ++ +  +Y + 
Sbjct: 394 L----------------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--IYLEL 435

Query: 222 KG-------------DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEID 268
           K              DH+ + + F     +    DQY +    +  +H       L  I+
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-F--YSHIGHH-------LKNIE 485

Query: 269 QTATNIADKDRKMTALHL-------------AAGRGHARTVETILSLAPECFE--LVDN- 312
                  ++      + L              A       + T+  L  + ++  + DN 
Sbjct: 486 H-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDND 538

Query: 313 RRWNFLHYAVASFQLQDLKPLLRNPFARI----LINEGDA 348
            ++  L  A+  F  +  + L+ + +  +    L+ E +A
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 67/436 (15%), Positives = 128/436 (29%), Gaps = 134/436 (30%)

Query: 34  ADGNAEPFKDMAREVIES-----LLTLQTR--NTILHINIMCQDAENASTKFVEEILEIC 86
            + + +  +DM + ++       ++  +     T+     +    E    KFVEE+L I 
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 87  PALLIQVNAKGDTPLHVAAKFGHSDIVRVLID-RAKLAQDGD-------------EAARQ 132
              L+       +P+    +   S + R+ I+ R +L  D                  RQ
Sbjct: 91  YKFLM-------SPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 133 MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVL 192
            +  +   KN  +   +  G                      GKT +  A +   S  V 
Sbjct: 143 ALLELRPAKNVLID-GV-LG---------------------SGKTWV--ALDVCLSYKVQ 177

Query: 193 T-------------------LLENCTSLSHE-GPNGKT-ALHAAVMYFDFKGDHHAMRQL 231
                               +LE    L ++  PN  + + H++ +          +R+L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 232 FGRK---KSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAA 288
              K     LL V                     +   +      +  + +++T    AA
Sbjct: 238 LKSKPYENCLL-VLLNV-QNA----------KAWNAFNL-SCKILLTTRFKQVTDFLSAA 284

Query: 289 GRGHARTVETILSLAP-ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD 347
              H       ++L P E   L        L Y     + QDL                +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL-------LLKY--LDCRPQDLPR--------------E 321

Query: 348 AKGNTPLHV--FAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI 405
                P  +   A         +       N++ VN   ++   I++         +L++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW------DNWKHVNCDKLT--TIIE--------SSLNV 365

Query: 406 LSTYKSRFLFHYLF-F 420
           L   + R +F  L  F
Sbjct: 366 LEPAEYRKMFDRLSVF 381

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 15/150 (10%)

Query: 180 YMAAESESSDMVLTLLENCTSLSHEGPN------GKTALHAAVMYFDFKGDHHAMRQLF- 232
           + A  +     VL    N        P        +  LH AV   + +     +  +  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN-QASLPLVDFIIQ 214

Query: 233 -GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291
            G     L      G T +HYAA + +     LL   +      ++  + TAL +A  + 
Sbjct: 215 NGGH---LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE-TALDIARKKH 270

Query: 292 HARTVETILSLAPECFELVDN--RRWNFLH 319
           H    E +       F    +    W    
Sbjct: 271 HKECEELLEQAQAGTFAFPLHVDYSWVIST 300

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 58  RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI 117
              +LH+    + A  AS   V+ I++     L    A G+T LH AA +   D +++L+
Sbjct: 190 EELVLHL--AVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 118 DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
                        R ++  VN    TAL  A    + E  ++L
Sbjct: 247 KG-----------RALVGTVNEAGETALDIARKKHHKECEELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 163 EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK 222
            D ++     D   TPL  A  + S      LL+N  +++     G+  LH A +     
Sbjct: 224 ADVNWVNGGQD-NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL---- 278

Query: 223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
             H  +  LF ++ + L   D  G  P+  A       I  LL 
Sbjct: 279 -GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 9/145 (6%)

Query: 162 REDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL--SHEGPNGKTALHAAVMYF 219
            E P     +   G      +    S   +   L +   +   + G +  T L  A    
Sbjct: 187 PEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA-- 244

Query: 220 DFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDR 279
                  A   L     ++    D  G  P+H+A   G   +  L           D + 
Sbjct: 245 --ANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301

Query: 280 KMTALHLAAGRGHARTVETILSLAP 304
           +   L +A    +A  + T+L LA 
Sbjct: 302 R-DPLTIAMETANA-DIVTLLRLAK 324

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           Q ++ G  PLH A   GH+ +  + + R          A    R    +    L  AM  
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKR---------GADLGARDSEGR--DPLTIAMET 311

Query: 152 GNMEVVKIL 160
            N ++V +L
Sbjct: 312 ANADIVTLL 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-60  Score=441.80  Aligned_cols=361  Identities=24%  Similarity=0.262  Sum_probs=265.7

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      +.+.||||+||..|++++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +..++.++..|.||||
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHH
Confidence            4566778888888888888888877776666677777888888  778888888887776    5666777777778888


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccch----------------HHHHHH------HHHhcCCCCcHHHHHHhCCCHHHHHHH
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGD----------------EAARQM------IRMVNNKKNTALHDAMFPGNMEVVKIL  160 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~~~------i~~~~~~g~t~L~~A~~~~~~~~v~~L  160 (424)
                      +|+..|+.++|++|+++|++++...                +....+      .+..+..|.||||+|+..|+.+++++|
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888888887777643110                000111      112345566777777777777777777


Q ss_pred             hhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccc
Q 014436          161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK  240 (424)
Q Consensus       161 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~  240 (424)
                      ++++++++ ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.. ++
T Consensus       166 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~  239 (437)
T 1n11_A          166 LERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ----NQVEVARSLLQYGGS-AN  239 (437)
T ss_dssp             HHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TT
T ss_pred             HhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CC
Confidence            77766654 5566677777777777777777777777777777777777777777776    777777777776665 46


Q ss_pred             ccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436          241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY  320 (424)
Q Consensus       241 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  320 (424)
                      ..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|.++ +.++..|+||||+
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~  317 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV  317 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence            6777788888888888887777777776666555554 7788888888888888888888888876 7778888888888


Q ss_pred             HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhH
Q 014436          321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV  400 (424)
Q Consensus       321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  400 (424)
                      |+..++.+++++|++.   |++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||+++|.+. ++..+
T Consensus       318 A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~l~~A~~~-g~~~~  392 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL-GYISV  392 (437)
T ss_dssp             HHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHT-TCHHH
T ss_pred             HHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHc-CcHHH
Confidence            8888888888888887   88888888888888888888888888888887 7888888888888888888653 55544


Q ss_pred             HH
Q 014436          401 IN  402 (424)
Q Consensus       401 ~~  402 (424)
                      ++
T Consensus       393 ~~  394 (437)
T 1n11_A          393 TD  394 (437)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-60  Score=442.40  Aligned_cols=332  Identities=23%  Similarity=0.267  Sum_probs=289.1

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      ..+.||||+||..|+.++|++|++.|.+.+..+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||
T Consensus        45 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~  118 (437)
T 1n11_A           45 VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLEN----NANPNLATTAGHTPLH  118 (437)
T ss_dssp             SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHhC----CCCCCCCCCCCCcHHH
Confidence            3556788888888888888888888887777777888888888  888888888888886    5666667777777777


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccch----------------HHHHHH------HHHhcCCCCcHHHHHHhCCCHHHHHHH
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGD----------------EAARQM------IRMVNNKKNTALHDAMFPGNMEVVKIL  160 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~~~------i~~~~~~g~t~L~~A~~~~~~~~v~~L  160 (424)
                      +|+..|+.+++++|++++++.....                ...+.+      ++..+..|.||||+|+..|+.+++++|
T Consensus       119 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777777777766543111                111111      245667899999999999999999999


Q ss_pred             hhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccc
Q 014436          161 TREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLK  240 (424)
Q Consensus       161 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~  240 (424)
                      ++++.+.. ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.. ++
T Consensus       199 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~~~~-~~  272 (437)
T 1n11_A          199 LPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE----GHAEMVALLLSKQAN-GN  272 (437)
T ss_dssp             GGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHTTTCC-TT
T ss_pred             HhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC----CCHHHHHHHHhcCCC-CC
Confidence            99999866 6778899999999999999999999999999999999999999999999    999999999998877 58


Q ss_pred             ccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436          241 VTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY  320 (424)
Q Consensus       241 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  320 (424)
                      ..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.++..|+||||+
T Consensus       273 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~  350 (437)
T 1n11_A          273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQ  350 (437)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHH
Confidence            8899999999999999999999999888877776665 8999999999999999999999999997 8899999999999


Q ss_pred             HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      |+..++.+++++|++.   |++++.+|..|+|||++|.+.|+.+++++|..
T Consensus       351 A~~~g~~~iv~~Ll~~---ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          351 AAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCChHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999998   99999999999999999999999999987754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-47  Score=345.34  Aligned_cols=310  Identities=18%  Similarity=0.143  Sum_probs=272.0

Q ss_pred             HHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchh
Q 014436           43 DMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL  122 (424)
Q Consensus        43 ~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  122 (424)
                      .+.+.+.+....+..+.++||.|  ++.|+.+.++.++..   .+..++..|..|.||||+|+..|+.++|++|+++|++
T Consensus         9 ~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   83 (351)
T 3utm_A            9 DLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD   83 (351)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45556666667778899999999  999999999888764   5677788899999999999999999999999999998


Q ss_pred             cccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC
Q 014436          123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS  202 (424)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  202 (424)
                                 ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        84 -----------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (351)
T 3utm_A           84 -----------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT  151 (351)
T ss_dssp             -----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             -----------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                       66788999999999999999999999999999976 778889999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCch
Q 014436          203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMT  282 (424)
Q Consensus       203 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t  282 (424)
                      ..+..|.+++++++..    +..+.+.+...             ..++..++..+.......+......... ....|.|
T Consensus       152 ~~~~~g~~~l~~a~~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t  213 (351)
T 3utm_A          152 LVNCHGKSAVDMAPTP----ELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINFK-QPQSHET  213 (351)
T ss_dssp             CCCTTSCCHHHHCSSH----HHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCC
T ss_pred             cccCCCCcchHHHhhh----hhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCC
Confidence            9999999999999876    66666666553             2467778888877755555444443333 3348899


Q ss_pred             HHHHHHhc---CCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHh
Q 014436          283 ALHLAAGR---GHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA  359 (424)
Q Consensus       283 ~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~  359 (424)
                      |||.|+..   ++.+++++|++.|.++ +.++..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|+.
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHH
Confidence            99999999   6689999999999996 88999999999999999999999999998   99999999999999999999


Q ss_pred             cCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          360 VRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       360 ~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      .++.+++++|++ +|++++.+|..|+||+++|.
T Consensus       290 ~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          290 AGHLQTCRLLLS-YGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHSC
T ss_pred             cCcHHHHHHHHH-cCCCCCCcCCCCCChhhhhh
Confidence            999999999998 79999999999999999984

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-46  Score=338.63  Aligned_cols=312  Identities=18%  Similarity=0.150  Sum_probs=205.1

Q ss_pred             eeeccccCCCCcccccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhcc-ccCCcchhhhhhhHHhhhccHHHHHHHHH
Q 014436            6 SIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTL-QTRNTILHINIMCQDAENASTKFVEEILE   84 (424)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~l~~~~~   84 (424)
                      ..+|++.|.-.........+.++|+.||..|++++|++|++.|++++..+ ..|.||||+|  +..|+.+++++|++.  
T Consensus         6 ~~~p~~~p~~s~~~~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~--   81 (337)
T 4g8k_A            6 HNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH--   81 (337)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT--
T ss_pred             CCCCCCCCCCccCCCCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHc--
Confidence            34455555444444444456778888888888888888888888776554 3578888888  888888888888875  


Q ss_pred             hCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 014436           85 ICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRED  164 (424)
Q Consensus        85 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  164 (424)
                        ++.++..+..+.+|++.++..+...++..+++.+.+           ++..|..|.||||+|+..|+.+++++|+++|
T Consensus        82 --ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g  148 (337)
T 4g8k_A           82 --GADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD-----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRG  148 (337)
T ss_dssp             --TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             --CCchhhhccCCCchhHHHHhcccchhhHHhhhccch-----------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence              677777888888888888888888888888888877           5567778888888888888888888888887


Q ss_pred             CCCCCC---------CCCCCCcHHHHHHhcCChHHHHHHHH-hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436          165 PDYPYS---------ANDYGKTPLYMAAESESSDMVLTLLE-NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR  234 (424)
Q Consensus       165 ~~~~~~---------~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~  234 (424)
                      ++++..         .+..|.||||+|+..|+.++|++|++ .|++++.++..|.|+++.++..........++++|++.
T Consensus       149 a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~  228 (337)
T 4g8k_A          149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  228 (337)
T ss_dssp             CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT
T ss_pred             CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC
Confidence            765422         23457788888888888888888875 47788888888888877776553222333455555555


Q ss_pred             cCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh-CCCccccccCC
Q 014436          235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNR  313 (424)
Q Consensus       235 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~  313 (424)
                      +.. ++.++.                                  .|.||||+|+..++.+++++|++. +.+ ++.+|..
T Consensus       229 gad-~n~~d~----------------------------------~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~  272 (337)
T 4g8k_A          229 GAD-VNVRGE----------------------------------RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSD  272 (337)
T ss_dssp             TCC-TTCCCG----------------------------------GGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTT
T ss_pred             CCC-CCCcCC----------------------------------CCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCC
Confidence            544 344444                                  445555555555555566655554 333 3556666


Q ss_pred             CCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhh
Q 014436          314 RWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQA  379 (424)
Q Consensus       314 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~  379 (424)
                      |+||||+|++.|+.+++++|++.   |+++|.+|     |||+|++.++.+++++||+ +||++|.
T Consensus       273 G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~-~GA~~d~  329 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELLCKR---GASTDCGD-----LVMTARRNYDHSLVKVLLS-HGAKEDF  329 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHTT---SCSSTTCC-----HHHHHHHTTCHHHHHHHHH-TTCCC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCC-----HHHHHHHcCCHHHHHHHHH-CcCCCCC
Confidence            66666666666666666666665   56666554     6666666666666666665 5666654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.4e-46  Score=334.93  Aligned_cols=283  Identities=20%  Similarity=0.219  Sum_probs=198.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC-CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN-KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY  174 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  174 (424)
                      .|.||||.|+++|+.++|++|+++|++           ++.++. .|.||||+|+..|+.++|++|+++|+++. ..+..
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gad-----------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~   91 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGAN-----------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN   91 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCC-----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCC-----------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccC
Confidence            345666666666666666666666655           333333 35666666666666666666666666644 45555


Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc---------ccccCCC
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL---------LKVTDQY  245 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~---------~~~~~~~  245 (424)
                      +.++++.++..+...++..+++.+++++..|..|.||+|+|+..    ++.+++++++..+...         ....+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~----~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~  167 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANVNLRRKTKEDQERLRKG  167 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred             CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc----CcHHHHHHHHHcCCCcchhhccccccccccCC
Confidence            66666666666666666666666666666666666666666665    6666666666555432         1233455


Q ss_pred             CChHHHHHHhcCChhHHHHHhh-ccccccccccCCCchHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCcHHHH
Q 014436          246 GWTPIHYAAYHGKYWINDLLEI-DQTATNIADKDRKMTALHLAAGRGH----ARTVETILSLAPECFELVDNRRWNFLHY  320 (424)
Q Consensus       246 ~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  320 (424)
                      |.||||+|+..|+.+++++|.. .+...+..+. .|.|+++.++..+.    ..++++|++.|+++ +.++..|+||||+
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~  245 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLIL  245 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHH
Confidence            7777777777777776666653 3444444444 67777776654432    46889999999997 8899999999999


Q ss_pred             HHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhH
Q 014436          321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV  400 (424)
Q Consensus       321 A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  400 (424)
                      |+..++.++++.|++..  +++++.+|..|+||||+|++.|+.+++++||+ +|++++.+     +||++|+.. ++..+
T Consensus       246 a~~~~~~~~v~~Ll~~~--~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~-~~~~i  316 (337)
T 4g8k_A          246 AVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRN-YDHSL  316 (337)
T ss_dssp             HHHTTCHHHHHHHHTST--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHT-TCHHH
T ss_pred             HHHhhhhHHHHHHHHhc--CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHc-CCHHH
Confidence            99999999999999864  88999999999999999999999999999998 89998754     599999864 77778


Q ss_pred             HHHHH
Q 014436          401 INLSI  405 (424)
Q Consensus       401 ~~~~~  405 (424)
                      +++.+
T Consensus       317 v~~Ll  321 (337)
T 4g8k_A          317 VKVLL  321 (337)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.5e-45  Score=320.74  Aligned_cols=265  Identities=21%  Similarity=0.245  Sum_probs=239.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh-cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV-NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY  174 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  174 (424)
                      +|.||||.|+..|+.+++++|++.|++           ++.. +..|.||||+|+..|+.+++++|+++|+++. ..+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~   71 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-----------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN   71 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC-----------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCC
Confidence            578999999999999999999999987           3444 6789999999999999999999999999976 77888


Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCccccc----------CC
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVT----------DQ  244 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~----------~~  244 (424)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+... +..          +.
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~  146 (285)
T 1wdy_A           72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANV-NLRRKTKEDQERLRK  146 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh----CCHHHHHHHHHhCCCc-ccccccHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999    9999999999998763 444          77


Q ss_pred             CCChHHHHHHhcCChhHHHHHhhc-cccccccccCCCchHHHHHHhcCC----HHHHHHHHhhCCCccccccCCCCcHHH
Q 014436          245 YGWTPIHYAAYHGKYWINDLLEID-QTATNIADKDRKMTALHLAAGRGH----ARTVETILSLAPECFELVDNRRWNFLH  319 (424)
Q Consensus       245 ~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~  319 (424)
                      .|.||||.|+..|+.+++++|... +...+..+. .|.||||.|+..++    .+++++|++.|+++ +.++..|.||||
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~  224 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLI  224 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence            899999999999999988888765 555555554 88999999999998    89999999999986 788999999999


Q ss_pred             HHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436          320 YAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       320 ~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~  382 (424)
                      +|+..++.+++++|++..  |++++.+|..|+||||+|++.++.+++++|++ +|++++.+|.
T Consensus       225 ~A~~~~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~-~Ga~~~~~d~  284 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             HHHHcCCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCcccc
Confidence            999999999999999943  88999999999999999999999999999988 8999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.3e-44  Score=327.04  Aligned_cols=324  Identities=20%  Similarity=0.168  Sum_probs=269.9

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHH-HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHH
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMARE-VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPL  101 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  101 (424)
                      ..+.++|+.||..|+.+.|+.++.. +.+....+..|.||||+|  +..|+.+++++|++.    +..++.+|..|.|||
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L   95 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQH----GADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCcHH
Confidence            3456889999999999999999985 665567888999999999  999999999999986    788899999999999


Q ss_pred             HHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHH
Q 014436          102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYM  181 (424)
Q Consensus       102 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  181 (424)
                      |+|+..|+.+++++|+++|++           ++..|..|.||||+|+..|+.+++++|+++|++.. ..+..|.||+++
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~  163 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGAC-----------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDM  163 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHH
Confidence            999999999999999999988           66778899999999999999999999999999966 778889999999


Q ss_pred             HHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC---
Q 014436          182 AAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK---  258 (424)
Q Consensus       182 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~---  258 (424)
                      |+..+..+.+++....            +++..++..    +..+.+..++...... ...+..|.||||+|+..++   
T Consensus       164 a~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~  226 (351)
T 3utm_A          164 APTPELRERLTYEFKG------------HSLLQAARE----ADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKR  226 (351)
T ss_dssp             CSSHHHHHHHHHHHHH------------HHHHHHHHT----TCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTH
T ss_pred             HhhhhhHHHHHhhhcc------------cHHHHHHHh----ccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccH
Confidence            9988888888776643            356777777    8899999888877654 4567889999999999954   


Q ss_pred             hhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCc
Q 014436          259 YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPF  338 (424)
Q Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~  338 (424)
                      .+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|++.  
T Consensus       227 ~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--  302 (351)
T 3utm_A          227 KQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSY--  302 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--
T ss_pred             HHHHHHHHHcCCCcCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--
Confidence            5588888888887776665 8999999999999999999999999997 88999999999999999999999999998  


Q ss_pred             cccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436          339 ARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYG  394 (424)
Q Consensus       339 ~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~  394 (424)
                       |++++.+|..|+||+|+|    ..+++++|.+. +   ......+.+++..|.+.
T Consensus       303 -gad~~~~~~~g~tal~~a----~~~~~~~l~~~-~---~~~~~~~~~~l~~A~~~  349 (351)
T 3utm_A          303 -GSDPSIISLQGFTAAQMG----NEAVQQILSES-T---PMRTSDVDYRLLEASKA  349 (351)
T ss_dssp             -TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC----------------------
T ss_pred             -CCCCCCcCCCCCChhhhh----hHHHHHHHHhc-c---ccccCcceeehhhhhcc
Confidence             999999999999999998    44566666553 2   34455677888887653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-43  Score=309.99  Aligned_cols=263  Identities=21%  Similarity=0.190  Sum_probs=146.2

Q ss_pred             CCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhh-ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQV-NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        58 g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      |.|+||+|  ++.|+.+++++|++.    +..++.. +..|.||||+|+..|+.+++++|+++|++           ++.
T Consensus         5 g~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~   67 (285)
T 1wdy_A            5 DNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----------PVL   67 (285)
T ss_dssp             HHHHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred             cchHHHHH--HHcCCHHHHHHHHHc----CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------Ccc
Confidence            34444444  444444444444443    2333333 34445555555555555555555555544           233


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC----------CC
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE----------GP  206 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~  206 (424)
                      .+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..          +.
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  146 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK  146 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhcc
Confidence            44455555555555555555555555555433 34444555555555555555555555555554444          44


Q ss_pred             CCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC----hhHHHHHhhccccccccccCCCch
Q 014436          207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK----YWINDLLEIDQTATNIADKDRKMT  282 (424)
Q Consensus       207 ~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~t  282 (424)
                      .|.||||+|+..    ++.+++++|++..+..++..+..|.||||+|+..+.    .++.++|...+...+..+. .|.|
T Consensus       147 ~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~-~g~t  221 (285)
T 1wdy_A          147 GGATALMDAAEK----GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKT  221 (285)
T ss_dssp             CCCCHHHHHHHH----TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCC
T ss_pred             CCCcHHHHHHHc----CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC-CCCc
Confidence            455555555555    555555555554222244455555555555555554    3455555555544444443 6677


Q ss_pred             HHHHHHhcCCHHHHHHHHh-hCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccccccc
Q 014436          283 ALHLAAGRGHARTVETILS-LAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGD  347 (424)
Q Consensus       283 ~l~~a~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d  347 (424)
                      |||+|+..++.+++++|++ .|.++ +.+|..|+||||+|+..++.+++++|+++   |++++.+|
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d  283 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD  283 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCCc-cccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence            7777777777777777777 56664 66777788888888888888888888777   77777665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-44  Score=329.39  Aligned_cols=315  Identities=17%  Similarity=0.129  Sum_probs=218.2

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV  103 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (424)
                      ....+|..|+..|+.+.++.+++......    .-.+++.-+  ...|+.+++++++..         ..+..|.||||.
T Consensus        36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~~~~~~~~---------~~~~~g~t~L~~  100 (373)
T 2fo1_E           36 SSQHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGN--DFLGDFNHTNLQIPT---------EPEPESPIKLHT  100 (373)
T ss_dssp             -------------------------------------------------------------------------CCCHHHH
T ss_pred             ccccccccccCCccccchhhhhhhhcccc----CccccCCCC--Ccccccccccccccc---------CCCCCCccHHHH
Confidence            34456888999999999999998655321    223456667  777888888876553         357889999999


Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHHh--------hcCCCCCCCCCCC
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKILT--------REDPDYPYSANDY  174 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~~~~~~~  174 (424)
                      |+..+. +++++|+...             ++..| ..|.||||+|+..|+.+++++|+        +.|.+++ ..+..
T Consensus       101 Aa~~~~-~~~~~L~~~~-------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~~  165 (373)
T 2fo1_E          101 EAAGSY-AITEPITRES-------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCD  165 (373)
T ss_dssp             HHHSSS-CCCSCCSTTT-------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTT
T ss_pred             HhcCCc-hHHHHhcccc-------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CCCCC
Confidence            999654 7888876532             55667 68999999999999998887776        7899876 77889


Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC--CcccccCCCCChHHHH
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK--SLLKVTDQYGWTPIHY  252 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~t~l~~  252 (424)
                      |.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..    ++.+++++|+..+.  ..++..+..|.||||+
T Consensus       166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN----RDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC----CCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999    99999999998762  2357888999999999


Q ss_pred             HHhcC---ChhHHHHHhhcccccccc-------ccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHH
Q 014436          253 AAYHG---KYWINDLLEIDQTATNIA-------DKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV  322 (424)
Q Consensus       253 a~~~~---~~~~~~~l~~~~~~~~~~-------~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~  322 (424)
                      |+..+   ..+++++|...+...+..       .+..|.||||+|+..|+.+++++|++.+....+.+|..|+||||+|+
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            99987   566888887776665441       22378899999999999999999998873334888899999999999


Q ss_pred             HcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchh
Q 014436          323 ASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHAN  376 (424)
Q Consensus       323 ~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~  376 (424)
                      ..|+.+++++|++.   |++++.+|..|+||||+|+..++.+++++|++ +|++
T Consensus       322 ~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~-~~a~  371 (373)
T 2fo1_E          322 QEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR-CRPE  371 (373)
T ss_dssp             HHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT-TC--
T ss_pred             HcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCcc
Confidence            99999999999988   88899999999999999999999999988887 5654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.6e-43  Score=306.17  Aligned_cols=252  Identities=17%  Similarity=0.123  Sum_probs=157.5

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      ...|.|+||+|+..|+.+.+..++..+.............++..|..|.||||+|+..|+.+++++|++.|.+++ ..+.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            456889999999999987777766654331100000000045678899999999999999999999999999876 7788


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA  253 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  253 (424)
                      .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.+... +. +.         
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~-~~-~~---------  155 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS----GSWDCVNLLLQHGASV-QP-ES---------  155 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCCS-SC-SC---------
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CHHHHHHHHHHCCCCC-CC-CC---------
Confidence            899999999999999999999999999999999999999999998    9999999999877653 21 22         


Q ss_pred             HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436          254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL  333 (424)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  333 (424)
                                               .|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|
T Consensus       156 -------------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          156 -------------------------DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             -------------------------TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             -------------------------CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence                                     2445555555556666666666666554 55566666666666666666666666


Q ss_pred             hhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          334 LRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       334 l~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      ++.   |++++. |..|+||||+|+..++.+++++|++ +|++++.+|..|+||+|+|.
T Consensus       210 l~~---ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          210 LES---GADVNQ-GKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHT---TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSC
T ss_pred             HHC---CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhc
Confidence            665   555553 5566666666666666666666655 46666666666666666665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-43  Score=319.19  Aligned_cols=299  Identities=17%  Similarity=0.112  Sum_probs=224.4

Q ss_pred             eeeeccccCCCCcccccccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHH
Q 014436            5 ISIEFEEAPSLGSKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILE   84 (424)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~   84 (424)
                      ..+.....+.+.+.........+.+..+...|+++++++++...     .+..|.|+||+|  +..+ .+++++|++   
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~A--a~~~-~~~~~~L~~---  114 (373)
T 2fo1_E           46 YDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTE--AAGS-YAITEPITR---  114 (373)
T ss_dssp             -----------------------------------------------------CCCHHHHH--HHSS-SCCCSCCST---
T ss_pred             CCccccchhhhhhhhccccCccccCCCCCccccccccccccccC-----CCCCCccHHHHH--hcCC-chHHHHhcc---
Confidence            33444444444444333322334567788889999999987653     456899999999  8844 578777643   


Q ss_pred             hCchhhhhhc-cCCCcHHHHHHHcCcHHHHHHHH--------HhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHH
Q 014436           85 ICPALLIQVN-AKGDTPLHVAAKFGHSDIVRVLI--------DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME  155 (424)
Q Consensus        85 ~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~  155 (424)
                         ..++..| ..|.||||+|+..|+.+++++|+        +.|++           ++..|..|.||||+|+..|+.+
T Consensus       115 ---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-----------vn~~d~~g~TpL~~A~~~g~~~  180 (373)
T 2fo1_E          115 ---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-----------VNAMDCDENTPLMLAVLARRRR  180 (373)
T ss_dssp             ---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-----------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             ---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-----------CcCCCCCCCCHHHHHHHcChHH
Confidence               3567777 78999999999999998888776        67777           6778899999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC---CCCCCCCCCCCcHHHHHHHccccCC---cHHHHH
Q 014436          156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC---TSLSHEGPNGKTALHAAVMYFDFKG---DHHAMR  229 (424)
Q Consensus       156 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~t~L~~a~~~~~~~~---~~~~~~  229 (424)
                      ++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++   ++++..+..|.||||+|+..    +   +.++++
T Consensus       181 iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~----~~~~~~~~v~  255 (373)
T 2fo1_E          181 LVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN----EGRDQVASAK  255 (373)
T ss_dssp             HHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS----CSTTHHHHHH
T ss_pred             HHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh----CCcchHHHHH
Confidence            9999999999977 77889999999999999999999999998   89999999999999999998    6   899999


Q ss_pred             HHHhhcCCccc--------ccCCCCChHHHHHHhcCChhHHHHHhhcc-ccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436          230 QLFGRKKSLLK--------VTDQYGWTPIHYAAYHGKYWINDLLEIDQ-TATNIADKDRKMTALHLAAGRGHARTVETIL  300 (424)
Q Consensus       230 ~Ll~~~~~~~~--------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  300 (424)
                      +|++.+... +        ..+..|.||||+|+..|+.+++++|...+ ...+..+. .|.||||+|+..|+.+++++|+
T Consensus       256 ~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll  333 (373)
T 2fo1_E          256 LLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLI  333 (373)
T ss_dssp             HHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHH
Confidence            999998764 3        25778999999999999999888888665 55555555 8999999999999999999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       301 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                      +.|+++ +.+|..|+||||+|+.+++.+++++|+++
T Consensus       334 ~~gad~-~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          334 QQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HcCCCc-cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999997 88999999999999999999999999997

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.3e-41  Score=293.88  Aligned_cols=220  Identities=14%  Similarity=0.052  Sum_probs=166.4

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhcCC----------CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436          139 NKKNTALHDAMFPGNMEVVKILTREDP----------DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG  208 (424)
Q Consensus       139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  208 (424)
                      ..|.|+||+|+..|+.+.+..++..++          ......+..|.||||+|+..|+.+++++|++.|++++.++..|
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g   92 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH   92 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            578899999999999877776654432          1233577889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHH
Q 014436          209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAA  288 (424)
Q Consensus       209 ~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~  288 (424)
                      .||||+|+..    ++.+++++|++.+.. ++..+                                  ..|.||||+|+
T Consensus        93 ~t~L~~A~~~----g~~~~v~~Ll~~ga~-~~~~~----------------------------------~~g~t~L~~A~  133 (285)
T 3d9h_A           93 VSPLHEACLG----GHLSCVKILLKHGAQ-VNGVT----------------------------------ADWHTPLFNAC  133 (285)
T ss_dssp             CCHHHHHHHT----TCHHHHHHHHHTTCC-SSCCC----------------------------------TTCCCHHHHHH
T ss_pred             CCHHHHHHHC----CcHHHHHHHHHCCCC-CCCCC----------------------------------CCCCCHHHHHH
Confidence            9999999998    999999999987654 23222                                  25667888888


Q ss_pred             hcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhh
Q 014436          289 GRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRY  368 (424)
Q Consensus       289 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~  368 (424)
                      ..|+.+++++|++.|+++ + .+..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.+++++
T Consensus       134 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAY---GGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHT---TCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            888889999999999886 3 345699999999999999999999998   89999999999999999999999999999


Q ss_pred             hccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHH
Q 014436          369 MSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI  405 (424)
Q Consensus       369 LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  405 (424)
                      |++ .|++++. |..|+||||+|+.. ++..++++.+
T Consensus       209 Ll~-~ga~~~~-~~~g~t~L~~A~~~-~~~~~v~~Ll  242 (285)
T 3d9h_A          209 LLE-SGADVNQ-GKGQDSPLHAVVRT-ASEELACLLM  242 (285)
T ss_dssp             HHH-TTCCTTC-CBTTBCHHHHHHHT-TCHHHHHHHH
T ss_pred             HHH-CCCCCCC-CCCCCCHHHHHHHc-CCHHHHHHHH
Confidence            998 7999995 89999999999864 7777777443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.7e-41  Score=289.30  Aligned_cols=230  Identities=21%  Similarity=0.173  Sum_probs=163.5

Q ss_pred             HHHhcCCCCcHHHHHHhCC-------------CHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          134 IRMVNNKKNTALHDAMFPG-------------NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                      ++.+|.+|.||||+|+..|             +.+++++|++.|+++....+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6788999999999999977             899999999999998777789999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCC
Q 014436          201 LSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK  280 (424)
Q Consensus       201 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  280 (424)
                      ++..+..|.||||+|+..    ++.+++++|++.+...++..+..|.||||+|+..++.+++++|...+...+..+. .|
T Consensus        83 ~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g  157 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSA----DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LG  157 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHH----TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TS
T ss_pred             CCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CC
Confidence            999999999999999999    9999999999998866788888888888888888888877777777666565554 77


Q ss_pred             chHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436          281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV  360 (424)
Q Consensus       281 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  360 (424)
                      .||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|++.
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~  233 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQER  233 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHc
Confidence            78888888888888888888888775 66777888888888888888888888877   777888888888888888888


Q ss_pred             CCcchhhhhccc
Q 014436          361 RPSEFNRYMSRT  372 (424)
Q Consensus       361 ~~~~~~~~LL~~  372 (424)
                      |+.+++++|...
T Consensus       234 g~~~i~~~l~~~  245 (253)
T 1yyh_A          234 MHHDIVRLLDLE  245 (253)
T ss_dssp             TCHHHHHHHHC-
T ss_pred             CCHHHHHHHHHH
Confidence            888888777653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.5e-41  Score=295.14  Aligned_cols=250  Identities=19%  Similarity=0.089  Sum_probs=190.5

Q ss_pred             HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCC--CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHH
Q 014436          135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDY--PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL  212 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L  212 (424)
                      +.+|.+|.||||+|+..|+.+++++|++.+++.  ....+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            457889999999999999999999999998872  236788899999999999999999999999999999999999999


Q ss_pred             HHHHHccccCCcHHHHHHHHhhcCCcc------------cccCCCCChHHHHHHhcCChh-HHHHHhhccccccccccCC
Q 014436          213 HAAVMYFDFKGDHHAMRQLFGRKKSLL------------KVTDQYGWTPIHYAAYHGKYW-INDLLEIDQTATNIADKDR  279 (424)
Q Consensus       213 ~~a~~~~~~~~~~~~~~~Ll~~~~~~~------------~~~~~~~~t~l~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~  279 (424)
                      |+|+..    ++.+++++|++.++...            ......+.++++.+...+... ....+...+...+..+ ..
T Consensus        83 ~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  157 (282)
T 1oy3_D           83 HLACRV----RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YD  157 (282)
T ss_dssp             HHHTTT----TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TT
T ss_pred             HHHHHc----CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC-CC
Confidence            999999    99999999999875421            112234456666666554433 3333333334444444 48


Q ss_pred             CchHHHHHHhcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHH
Q 014436          280 KMTALHLAAGRGHARTVETILSLAPECFELVD-NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA  358 (424)
Q Consensus       280 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~  358 (424)
                      |.||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|+
T Consensus       158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          158 GHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHH
Confidence            999999999999999999999999997 5565 4599999999999999999999998   9999999999999999999


Q ss_pred             hcCCcchhhhhccccchhhhhhcCCCCchhhHHhhc
Q 014436          359 AVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYG  394 (424)
Q Consensus       359 ~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~  394 (424)
                      ..++.+++++|++ +|++++.+|..|+||+++|...
T Consensus       234 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          234 LRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             TSSCHHHHHHHHH-TTCCCCCCC-------------
T ss_pred             HcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCc
Confidence            9999999999998 8999999999999999999654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-41  Score=310.83  Aligned_cols=265  Identities=21%  Similarity=0.132  Sum_probs=138.4

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      .|..|.||||+|+..|+.++|++|+++|++           ++..|..|.||||+|+..|+.+++++|++.|++..   +
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~   81 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVS-----------PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---L   81 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---C
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---c
Confidence            344444555555555555555555555444           33444445555555555555555555555544322   2


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHh----CCCCCC-----------------CCCCCCcHHHHHHHccccCC--cHHHHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLEN----CTSLSH-----------------EGPNGKTALHAAVMYFDFKG--DHHAMR  229 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~~~~~~t~L~~a~~~~~~~~--~~~~~~  229 (424)
                      ..|.||||+|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+..    +  +.++++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~----g~~~~~~v~  157 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL----GPEYLEMIK  157 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS----CGGGHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc----CCchHHHHH
Confidence            2344555555555555555555554    333332                 333444444444444    4  444444


Q ss_pred             HHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhcccc-----ccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436          230 QLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-----TNIADKDRKMTALHLAAGRGHARTVETILSLAP  304 (424)
Q Consensus       230 ~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  304 (424)
                      +|++.+.. ++..+..|.||||+|+..|+.+++++|...+..     .+..+. .|.||||+|+..|+.+++++|++.|+
T Consensus       158 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          158 ILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             HHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             HHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            44444333 233444444444444444444444443333322     233333 56666666666666666666666666


Q ss_pred             CccccccCCCCcHHHHHHHcCCccchHHhhhCCcccccc------------ccccCCCCcHHHHHHhcCCcchhhhhccc
Q 014436          305 ECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILI------------NEGDAKGNTPLHVFAAVRPSEFNRYMSRT  372 (424)
Q Consensus       305 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i------------~~~d~~g~t~L~~A~~~~~~~~~~~LL~~  372 (424)
                      ++ +.+|..|+||||+|+..++.+++++|++.   ++++            ...+..|+|||+.|+..++.+.+..||. 
T Consensus       236 d~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~-  310 (364)
T 3ljn_A          236 DV-NMEDNEHTVPLYLSVRAAMVLLTKELLQK---TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-  310 (364)
T ss_dssp             CT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHH---SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH-
T ss_pred             CC-CCCCCCCCCHHHHHHHhChHHHHHHHHHc---CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHH-
Confidence            65 56666667777777777776677666665   3222            2245677888888888887777777777 


Q ss_pred             cchhhhhhcC
Q 014436          373 THANYQAVND  382 (424)
Q Consensus       373 ~g~~~~~~~~  382 (424)
                      .+++....+.
T Consensus       311 ~~~~~~~~~~  320 (364)
T 3ljn_A          311 EKLDEVVRSL  320 (364)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHhhcc
Confidence            4555444333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.7e-40  Score=290.72  Aligned_cols=255  Identities=19%  Similarity=0.122  Sum_probs=176.5

Q ss_pred             hhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCC
Q 014436           91 IQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS  170 (424)
Q Consensus        91 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  170 (424)
                      +.+|..|.||||+|+..|+.++|++|++.|++...        ++.++..|.||||+|+..|+.+++++|+++|++++ .
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~   73 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY--------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-V   73 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG--------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-C
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc--------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-C
Confidence            45677788888888888888888888877765221        44566777888888888888888888888877765 6


Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC-------------CCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          171 ANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE-------------GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       171 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-------------~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      .+..|.||||+|+..|+.+++++|++++++....             ...+.++++.+...    ........++.....
T Consensus        74 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  149 (282)
T 1oy3_D           74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP----NPENEEEPRDEDWRL  149 (282)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------CCCGGG
T ss_pred             CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc----ccchhhhhhhhhhhh
Confidence            6677888888888888888888888777553321             22344555555544    333333333333333


Q ss_pred             cccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcH
Q 014436          238 LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF  317 (424)
Q Consensus       238 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  317 (424)
                      .++..+..|.||||+|+..|+.+++++|...+...+..+...|.||||+|+..|+.+++++|++.|+++ +.++..|+||
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tp  228 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTP  228 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCH
Confidence            467888999999999999999999998888888777776656999999999999999999999999997 8899999999


Q ss_pred             HHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCC
Q 014436          318 LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRP  362 (424)
Q Consensus       318 l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  362 (424)
                      ||+|+..++.+++++|+++   |++++.+|..|.|||++|.....
T Consensus       229 L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHT---TCCCCCCC---------------
T ss_pred             HHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCccc
Confidence            9999999999999999998   99999999999999999987653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-39  Score=281.17  Aligned_cols=230  Identities=20%  Similarity=0.219  Sum_probs=180.7

Q ss_pred             hhhhccCCCcHHHHHHHcC-------------cHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHH
Q 014436           90 LIQVNAKGDTPLHVAAKFG-------------HSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV  156 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~  156 (424)
                      ++.+|..|.||||+|+..|             +.+++++|++.|++.          .+..|..|.||||+|+..|+.++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~----------~~~~d~~g~t~L~~A~~~g~~~~   72 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL----------HNQTDRTGETALHLAARYSRSDA   72 (253)
T ss_dssp             -----------------------------------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc----------ccccCCCCCcHHHHHHHcCCHHH
Confidence            4456666677777776655             899999999999873          23458899999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC-CCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT-SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       157 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      +++|+++|++++ ..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..    ++.+++++|++.+
T Consensus        73 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g  147 (253)
T 1yyh_A           73 AKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL----AVEGMLEDLINSH  147 (253)
T ss_dssp             HHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH----TCSSHHHHHHHTT
T ss_pred             HHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc----ChHHHHHHHHHcC
Confidence            999999999976 778899999999999999999999999996 8999999999999999999    9999999999988


Q ss_pred             CCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 014436          236 KSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRW  315 (424)
Q Consensus       236 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  315 (424)
                      .. ++..+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+
T Consensus       148 ~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~  224 (253)
T 1yyh_A          148 AD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANR-DITDHMDR  224 (253)
T ss_dssp             CC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred             CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccCCC
Confidence            77 588999999999999999999999999988888777665 8999999999999999999999999996 88999999


Q ss_pred             cHHHHHHHcCCccchHHhhhCC
Q 014436          316 NFLHYAVASFQLQDLKPLLRNP  337 (424)
Q Consensus       316 t~l~~A~~~~~~~~~~~ll~~~  337 (424)
                      ||+++|+++|+.+++++|....
T Consensus       225 tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          225 LPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHHh
Confidence            9999999999999999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.7e-39  Score=278.85  Aligned_cols=223  Identities=22%  Similarity=0.225  Sum_probs=156.6

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhh----cCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCC
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTR----EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK  209 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  209 (424)
                      ++.+|.+|.||||+|+..|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            56788999999999999999999999997    566755 7788899999999999999999999999999999999999


Q ss_pred             cHHHHHHHccccCCcHHHHHHHHhhcCC---cccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHH
Q 014436          210 TALHAAVMYFDFKGDHHAMRQLFGRKKS---LLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHL  286 (424)
Q Consensus       210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~  286 (424)
                      ||||+|+..    ++.+++++|+..+..   .++..+.                                  .|.||||.
T Consensus        81 t~l~~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~----------------------------------~g~t~L~~  122 (241)
T 1k1a_A           81 TAAHLACEH----RSPTCLRALLDSAAPGTLDLEARNY----------------------------------DGLTALHV  122 (241)
T ss_dssp             CHHHHHHHT----TCHHHHHHHHHHSCTTSCCTTCCCT----------------------------------TSCCHHHH
T ss_pred             CHHHHHHHc----CCHHHHHHHHHcCCCccccccccCc----------------------------------CCCcHHHH
Confidence            999999998    999999999988763   2233333                                  44555555


Q ss_pred             HHhcCCHHHHHHHHhhCCCcccccc-CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcch
Q 014436          287 AAGRGHARTVETILSLAPECFELVD-NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEF  365 (424)
Q Consensus       287 a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~  365 (424)
                      |+..++.+++++|++.|+++ +..+ ..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.++
T Consensus       123 A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~  198 (241)
T 1k1a_A          123 AVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPL  198 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            55555556666666665554 3333 5566666666666666666666655   55566666666666666666666666


Q ss_pred             hhhhccccchhhhhhcCCCCchhhHHhhcCchhhHH
Q 014436          366 NRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVI  401 (424)
Q Consensus       366 ~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  401 (424)
                      +++|++ +|++++.+|..|+||+++|+.. ++.+++
T Consensus       199 v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~-~~~~i~  232 (241)
T 1k1a_A          199 VRTLVR-SGADSSLKNCHNDTPLMVARSR-RVIDIL  232 (241)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCTTTTCSSH-HHHHHH
T ss_pred             HHHHHh-cCCCCCCcCCCCCCHHHHHHhc-CcHHHH
Confidence            665555 5666666666666666665532 444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.3e-40  Score=298.54  Aligned_cols=255  Identities=15%  Similarity=0.100  Sum_probs=225.8

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      .+..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.  ..|.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            55678889999999999999999999999999976 7888999999999999999999999999996554  57999999


Q ss_pred             HHHHccccCCcHHHHHHHHhh----cCCcccc-----------------cCCCCChHHHHHHhcC--ChhHHHHHhhccc
Q 014436          214 AAVMYFDFKGDHHAMRQLFGR----KKSLLKV-----------------TDQYGWTPIHYAAYHG--KYWINDLLEIDQT  270 (424)
Q Consensus       214 ~a~~~~~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~  270 (424)
                      +|+..    ++.+++++|++.    +.. ++.                 .+..|.||||+|+..|  +.+++++|...+.
T Consensus        90 ~A~~~----g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga  164 (364)
T 3ljn_A           90 LAVMA----NKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA  164 (364)
T ss_dssp             HHHHT----TCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred             HHHHc----CCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            99999    999999999998    443 233                 7788999999999999  8899999988888


Q ss_pred             cccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCc----cccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccc
Q 014436          271 ATNIADKDRKMTALHLAAGRGHARTVETILSLAPEC----FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEG  346 (424)
Q Consensus       271 ~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~  346 (424)
                      ..+..+. .|.||||+|+..|+.+++++|++.|++.    ++..+..|+||||+|+..++.+++++|++.   |++++.+
T Consensus       165 ~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~  240 (364)
T 3ljn_A          165 SPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM---GIDVNME  240 (364)
T ss_dssp             CTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCC
T ss_pred             CCcccCC-CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCC
Confidence            7777665 8999999999999999999999999882    378899999999999999999999999998   9999999


Q ss_pred             cCCCCcHHHHHHhcCCcchhhhhccccchhhhh------------hcCCCCchhhHHhhcCchhhHHH
Q 014436          347 DAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQA------------VNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       347 d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~------------~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      |..|+||||+|+..|+.+++++||+ +|++++.            .+..|+||++.|... ++...+.
T Consensus       241 d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~-~~~~~v~  306 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD-PSKQEVL  306 (364)
T ss_dssp             CTTSCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC-HHHHHHH
T ss_pred             CCCCCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhc-cCHHHHH
Confidence            9999999999999999999999998 6887655            567889999998754 5555554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.6e-39  Score=273.32  Aligned_cols=223  Identities=20%  Similarity=0.257  Sum_probs=167.4

Q ss_pred             HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 014436          135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA  214 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~  214 (424)
                      +..|..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            3456667777777777777777777777777655 556667777777777777777777777777777777777777777


Q ss_pred             HHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHH
Q 014436          215 AVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR  294 (424)
Q Consensus       215 a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~  294 (424)
                      |+..    ++.+++++|++.++..++..+                                  ..|.||||.|+..++.+
T Consensus        84 A~~~----~~~~~~~~Ll~~~~~~~~~~~----------------------------------~~g~t~L~~A~~~~~~~  125 (237)
T 3b7b_A           84 AAKK----GHYEVVQYLLSNGQMDVNCQD----------------------------------DGGWTPMIWATEYKHVD  125 (237)
T ss_dssp             HHHT----TCHHHHHHHHTTTCCCTTCCC----------------------------------TTSCCHHHHHHHTTCHH
T ss_pred             HHHc----CCHHHHHHHHhCCCCCcccCC----------------------------------CCCCCHHHHHHHcCCHH
Confidence            7776    777777777765533223222                                  25667777777777888


Q ss_pred             HHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccc
Q 014436          295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTH  374 (424)
Q Consensus       295 ~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g  374 (424)
                      ++++|++.|+++ +.++..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|++.++.+++++|++ +|
T Consensus       126 ~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g  200 (237)
T 3b7b_A          126 LVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RD  200 (237)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TT
T ss_pred             HHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cC
Confidence            888888888876 77788888888888888888888888887   78888888888888888888888888888887 78


Q ss_pred             hhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436          375 ANYQAVNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       375 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      ++++.+|..|+||+|+|... ++...+.
T Consensus       201 ad~~~~d~~g~t~l~~A~~~-~~~~~~~  227 (237)
T 3b7b_A          201 SDVTLKNKEGETPLQCASLN-SQVWSAL  227 (237)
T ss_dssp             CCTTCCCTTSCCHHHHSCTT-CHHHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHH-HHHHHHH
Confidence            88888888888888888753 5554444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-39  Score=287.75  Aligned_cols=264  Identities=20%  Similarity=0.158  Sum_probs=207.9

Q ss_pred             hHHhhhccHHHHHHHHHhCch-----hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCC
Q 014436           68 CQDAENASTKFVEEILEICPA-----LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN  142 (424)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~  142 (424)
                      +..++.+.++.++........     .....+..|.||||.||..|+.++|++|+++|++           ++..|..|.
T Consensus         6 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~   74 (299)
T 1s70_B            6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-----------INYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-----------TTCBCTTCC
T ss_pred             HHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-----------CcccCCCCC
Confidence            556666655555543211111     1112345678999999999999999999999988           667788999


Q ss_pred             cHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccC
Q 014436          143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK  222 (424)
Q Consensus       143 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~  222 (424)
                      ||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..    
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----  149 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE----  149 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH----
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc----
Confidence            99999999999999999999999976 7788899999999999999999999999999999999999999999988    


Q ss_pred             CcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh
Q 014436          223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL  302 (424)
Q Consensus       223 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  302 (424)
                      +..++++.++......++..+..                                  +.++++        ..+..++..
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~----------------------------------~~~~~~--------~~~~~~l~~  187 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKE----------------------------------EERIML--------RDARQWLNS  187 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHH----------------------------------HHHHHH--------HHHHHHHHH
T ss_pred             chHHHHHHHHhhcCCCchhhhhh----------------------------------hhhHHH--------HHHHHHHhc
Confidence            88899888887654432211100                                  011111        123345555


Q ss_pred             CCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436          303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       303 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~  382 (424)
                      +.......+..|.||||+|+..|+.+++++|++.   |++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|.
T Consensus       188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~  263 (299)
T 1s70_B          188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNK  263 (299)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCC
Confidence            5555456677889999999999999999999987   88899999999999999999999999988888 7999999999


Q ss_pred             CCCchhhHHhh
Q 014436          383 QNVSVGHIMKY  393 (424)
Q Consensus       383 ~g~t~l~~a~~  393 (424)
                      .|+||+++|.+
T Consensus       264 ~g~t~l~~A~~  274 (299)
T 1s70_B          264 VGQTAFDVADE  274 (299)
T ss_dssp             TSCCTTTSCCS
T ss_pred             CCCCHHHHHHH
Confidence            99999999964

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.3e-38  Score=269.99  Aligned_cols=227  Identities=22%  Similarity=0.253  Sum_probs=192.3

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY  169 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  169 (424)
                      ++..|..|.||||+|+..|+.+++++|+++|++           ++..+..|.||||+|+..|+.+++++|+++|.++. 
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   71 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-----------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-   71 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-
Confidence            456788999999999999999999999999988           56778899999999999999999999999999866 


Q ss_pred             CCCCCCCcHHHHHHhcCChHHHHHHHHhC-CCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436          170 SANDYGKTPLYMAAESESSDMVLTLLENC-TSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT  248 (424)
Q Consensus       170 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  248 (424)
                      ..+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..    ++.+++++|++.+.. ++..+.    
T Consensus        72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~----  142 (237)
T 3b7b_A           72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY----KHVDLVKLLLSKGSD-INIRDN----  142 (237)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCT----
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCccCC----
Confidence            67888999999999999999999999999 89999999999999999998    999999999987755 233332    


Q ss_pred             HHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCcc
Q 014436          249 PIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQ  328 (424)
Q Consensus       249 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~  328 (424)
                                                    .|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+
T Consensus       143 ------------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  191 (237)
T 3b7b_A          143 ------------------------------EENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYD  191 (237)
T ss_dssp             ------------------------------TSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred             ------------------------------CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHh
Confidence                                          4567777777777778888888888775 667888888888888888888


Q ss_pred             chHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          329 DLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       329 ~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      ++++|++.   |++++.+|..|+||||+|+..++.+.+..+++
T Consensus       192 ~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          192 CVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888887   78888888888888888888887765555543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.7e-38  Score=269.39  Aligned_cols=222  Identities=21%  Similarity=0.271  Sum_probs=150.6

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436          139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                      ..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            45789999999999999999999988776667888999999999999999999999999999999999999999999999


Q ss_pred             cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHH
Q 014436          219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET  298 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~  298 (424)
                          ++.+++++|++.+.. ++..+..|.||||+|+..++.+++++|...+...+..+. .|.||||.|+..|+.+++++
T Consensus        84 ----~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           84 ----GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             ----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHH
T ss_pred             ----CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHH
Confidence                999999999988765 355555555555555555555554444444443333332 44455555555555555555


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436          299 ILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS  370 (424)
Q Consensus       299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL  370 (424)
                      |++.|+++ +.++..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.+++++|+
T Consensus       158 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          158 LLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             HHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             HHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence            55555443 44444555555555555555555555544   4445555555555555555444444444333

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.2e-38  Score=273.52  Aligned_cols=228  Identities=21%  Similarity=0.197  Sum_probs=123.8

Q ss_pred             cccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHH
Q 014436           55 LQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI  134 (424)
Q Consensus        55 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i  134 (424)
                      |.+|.||||+|  +..|+.+++++|++.+...+..++..|..|.||||+|+..|+.+++++|+++|++           +
T Consensus         6 d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~   72 (241)
T 1k1a_A            6 DEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----------P   72 (241)
T ss_dssp             -CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------T
T ss_pred             CCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----------c
Confidence            34455555555  5555555555555544444444444555555555555555555555555555544           2


Q ss_pred             HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCC----CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCC
Q 014436          135 RMVNNKKNTALHDAMFPGNMEVVKILTREDP----DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGK  209 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~  209 (424)
                      +..+..|.||||+|+..|+.+++++|++.++    ++. ..+..|.||||+|+..++.+++++|+++|++++..+ ..|.
T Consensus        73 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  151 (241)
T 1k1a_A           73 MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR  151 (241)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCC
Confidence            3344445555555555555555555555544    222 334445555555555555555555555555554444 4445


Q ss_pred             cHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHh
Q 014436          210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAG  289 (424)
Q Consensus       210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~  289 (424)
                      ||||+|+..    ++.+++++|++.                                  +...+..+. .|.||||+|+.
T Consensus       152 t~L~~A~~~----~~~~~v~~Ll~~----------------------------------g~~~~~~~~-~g~t~L~~A~~  192 (241)
T 1k1a_A          152 SPLIHAVEN----NSLSMVQLLLQH----------------------------------GANVNAQMY-SGSSALHSASG  192 (241)
T ss_dssp             CHHHHHHHT----TCHHHHHHHHHT----------------------------------TCCTTCBCT-TSCBHHHHHHH
T ss_pred             cHHHHHHHc----CCHHHHHHHHHc----------------------------------CCCCCCcCC-CCCCHHHHHHH
Confidence            555555544    444444444444                                  433333333 56677777777


Q ss_pred             cCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          290 RGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       290 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                      .++.+++++|++.|+++ +.+|..|.||+|+|+..++.++++.|.+.
T Consensus       193 ~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          193 RGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             cCCHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            77777777777777775 66777777888887777777777777765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.6e-37  Score=264.67  Aligned_cols=225  Identities=23%  Similarity=0.227  Sum_probs=207.7

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      +..+.+|||.|+..|+.+.+++|++.+...          ++..+..|.||||+|+..|+.+++++|++.|.+++ ..+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~   71 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSL----------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDD   71 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCT
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhh----------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCC
Confidence            345789999999999999999999987653          55678899999999999999999999999999876 7788


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA  253 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  253 (424)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.. ++..+..|.||||+|
T Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A  146 (231)
T 3aji_A           72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK----NRHEIAVMLLEGGAN-PDAKDHYDATAMHRA  146 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence            899999999999999999999999999999999999999999999    999999999998877 588899999999999


Q ss_pred             HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436          254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL  333 (424)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  333 (424)
                      +..|+.+++++|...+...+..+. .|.||||+|+..++.+++++|++.|+++ +.++..|.||+++|+..++.+++++|
T Consensus       147 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          147 AAKGNLKMVHILLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence            999999999999888877776665 8999999999999999999999999997 88999999999999999999999999


Q ss_pred             hhC
Q 014436          334 LRN  336 (424)
Q Consensus       334 l~~  336 (424)
                      .+.
T Consensus       225 ~~~  227 (231)
T 3aji_A          225 EGE  227 (231)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            886

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=275.03  Aligned_cols=223  Identities=17%  Similarity=0.168  Sum_probs=147.6

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH-HHHHHHhhcCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM-EVVKILTREDPDYPYSA  171 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~  171 (424)
                      +|..+.+||+.||..|+.++|++|++.++......   ...++..+..|.|||+.|+..+.. .++++|++.|++++ ..
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~---~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~   82 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA---EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VT   82 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTT-CC
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc---cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-Cc
Confidence            56677899999999999999999999987643211   122667888999999999987765 58899999999977 78


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH  251 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  251 (424)
                      +..|+||||+|+..|+.+++++|++.+++++..+..|.||++.|+..    ++.++++.|++.+.. ++.+|..|     
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~----~~~~~~~~Ll~~g~~-~n~~d~~g-----  152 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ----GHFQVVKCLLDSNAK-PNKKDLSG-----  152 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCC-SCCCCTTC-----
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc----ChHHHHHHHHHCCCC-CCCCCCCC-----
Confidence            88999999999999999999999999999999999999999999998    999999999987765 35545444     


Q ss_pred             HHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchH
Q 014436          252 YAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLK  331 (424)
Q Consensus       252 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  331 (424)
                                                   .||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+..|+.++++
T Consensus       153 -----------------------------~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          153 -----------------------------NTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             -----------------------------CCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             -----------------------------CCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHH
Confidence                                         45555555555666666666666665 666777777777777777777777


Q ss_pred             HhhhCCccccccccccCCCCcHHHHHHhcCC
Q 014436          332 PLLRNPFARILINEGDAKGNTPLHVFAAVRP  362 (424)
Q Consensus       332 ~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  362 (424)
                      +|++.   |++++.+|..|+||||+|++.+.
T Consensus       203 ~Ll~~---Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          203 LLLLH---GASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHT---TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHC---CCCCCCcCCCCCCHHHHHHhCCc
Confidence            77776   67777777777777777766554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=264.31  Aligned_cols=228  Identities=21%  Similarity=0.264  Sum_probs=173.1

Q ss_pred             hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      ..|..|.|||+.|+..|+.+++++|++.|.+           ++..+..|.||||+|+..|+.+++++|++++++.....
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   72 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYD-----------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG   72 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCC-----------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc
Confidence            4577889999999999999999999999987           56778899999999999999999999999999888677


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH  251 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  251 (424)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..    ++.+++++|++.+.. ++..+..|.||||
T Consensus        73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~  147 (240)
T 3eu9_A           73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF----GHTSIVAYLIAKGQD-VDMMDQNGMTPLM  147 (240)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CHHHHHHHHHhcCCC-ccccCCCCCcHHH
Confidence            77799999999999999999999999999999999999999999998    999999999988766 4667777777777


Q ss_pred             HHHhcCC-hhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccch
Q 014436          252 YAAYHGK-YWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDL  330 (424)
Q Consensus       252 ~a~~~~~-~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~  330 (424)
                      +|+..+. ..+.++|...+...+..+...|.||||.|+..++.+++++|++.|+++ +.++..|.|||++|++.++.+++
T Consensus       148 ~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v  226 (240)
T 3eu9_A          148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMI  226 (240)
T ss_dssp             HHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence            7775554 335555555444444443334555555555555555555555555553 44555555555555555555555


Q ss_pred             HHhhhC
Q 014436          331 KPLLRN  336 (424)
Q Consensus       331 ~~ll~~  336 (424)
                      ++|++.
T Consensus       227 ~~L~~~  232 (240)
T 3eu9_A          227 NHLQEA  232 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-37  Score=272.34  Aligned_cols=235  Identities=18%  Similarity=0.152  Sum_probs=209.4

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++..   +|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            5578899999999999999999999999999987633   4999999999999999999999999999999999999999


Q ss_pred             HHHHccccCCcHHHHHHHHhhcCCcccccCCCC-ChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC
Q 014436          214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG-WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH  292 (424)
Q Consensus       214 ~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~  292 (424)
                      +|+..    ++.+++++|++.+.. ++..+..| .||||+|+..|+.+++++|...+....  +...|.||||+|+..|+
T Consensus       101 ~A~~~----g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~  173 (285)
T 3kea_A          101 YAVDS----GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGH  173 (285)
T ss_dssp             HHHHT----TCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTC
T ss_pred             HHHHc----CCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcCh
Confidence            99999    999999999999776 58889999 799999999999999999888776542  22278999999999999


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcH-HHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          293 ARTVETILSLAPECFELVDNRRWNF-LHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       293 ~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      .+++++|++.|+++ +.++..|+|| ||+|+..++.+++++|++.   |++++.+|.       .|+..++.+++++|++
T Consensus       174 ~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          174 VDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSANL-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             HHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence            99999999999996 8899999998 9999999999999999998   999999883       5678999999999998


Q ss_pred             ccchhhhhhcCCCCchhhHHh
Q 014436          372 TTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       372 ~~g~~~~~~~~~g~t~l~~a~  392 (424)
                       +|++++..+..+  .+.++.
T Consensus       243 -~g~~~~~~~~~~--~~~~~~  260 (285)
T 3kea_A          243 -KHVEYKSDSYTK--DLDIVK  260 (285)
T ss_dssp             -HHHHHTTCTTTT--TCHHHH
T ss_pred             -cCCCCCCccccc--hHHHHh
Confidence             899987765433  344443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=273.03  Aligned_cols=218  Identities=18%  Similarity=0.197  Sum_probs=160.5

Q ss_pred             HhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC-------CCCCCCCCcHHHHHHhcCCh-HHHHHHHHhCCCCCCCCCC
Q 014436          136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYP-------YSANDYGKTPLYMAAESESS-DMVLTLLENCTSLSHEGPN  207 (424)
Q Consensus       136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~  207 (424)
                      .+|..+.+||+.|+..|+.++|++|++.+++..       ...+..|.|||+.|+..+.. .+++.|++.|++++..|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            456667789999999999999999998876531       23455678888888876654 4778888888888888888


Q ss_pred             CCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHH
Q 014436          208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLA  287 (424)
Q Consensus       208 ~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a  287 (424)
                      |.||||+|+..    ++.+++++|+..++.. +..+                                  ..|.||++.|
T Consensus        86 G~TpLh~A~~~----g~~~~v~~Ll~~~a~~-~~~~----------------------------------~~g~t~l~~a  126 (269)
T 4b93_B           86 GSSPLHVAALH----GRADLIPLLLKHGANA-GARN----------------------------------ADQAVPLHLA  126 (269)
T ss_dssp             SCCHHHHHHHT----TCTTHHHHHHHTTCCT-TCCC----------------------------------TTCCCHHHHH
T ss_pred             CCCHHHHHHHc----CcHHHHHHHHhcCCCc-CccC----------------------------------CCCCCccccc
Confidence            88888888887    7778888777765542 2222                                  2567888888


Q ss_pred             HhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhh
Q 014436          288 AGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNR  367 (424)
Q Consensus       288 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~  367 (424)
                      +..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.   |+++|.++..|+||||+|+..|+.++++
T Consensus       127 ~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          127 CQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             HHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             cccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence            8888899999999999997 88999999999999999999999999998   9999999999999999999999999999


Q ss_pred             hhccccchhhhhhcCCCCchhhHHhhcCchh
Q 014436          368 YMSRTTHANYQAVNDQNVSVGHIMKYGYPEL  398 (424)
Q Consensus       368 ~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~  398 (424)
                      +||+ +|+|++.+|..|+||||+|++ ++++
T Consensus       203 ~Ll~-~Gad~~~~d~~G~TpL~~A~~-~~~i  231 (269)
T 4b93_B          203 LLLL-HGASVQVLNKRQRTAVDCAEQ-NSKI  231 (269)
T ss_dssp             HHHH-TTCCSCCCCTTSCCSGGGSCT-TCHH
T ss_pred             HHHH-CCCCCCCcCCCCCCHHHHHHh-CCcH
Confidence            9998 899999999999999999975 4664

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.5e-37  Score=260.36  Aligned_cols=212  Identities=20%  Similarity=0.250  Sum_probs=179.0

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC--CCCCC-CCCCCCcHHHHHHH
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC--TSLSH-EGPNGKTALHAAVM  217 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~~~t~L~~a~~  217 (424)
                      |.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6789999999999999999999888877667888999999999999999999999988  44444 66778888888888


Q ss_pred             ccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436          218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE  297 (424)
Q Consensus       218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~  297 (424)
                      .    ++.+++++|++.+..                                ...+..+ ..|.||||.|+..++.++++
T Consensus        82 ~----~~~~~~~~Ll~~g~~--------------------------------~~~~~~~-~~g~t~L~~A~~~~~~~~~~  124 (228)
T 2dzn_A           82 V----GNLEVVKSLYDRPLK--------------------------------PDLNKIT-NQGVTCLHLAVGKKWFEVSQ  124 (228)
T ss_dssp             H----CCHHHHHHHHSSSSC--------------------------------CCTTCCC-TTCCCHHHHHHHTTCHHHHH
T ss_pred             c----CCHHHHHHHHhCCCC--------------------------------cccccCC-cCCCCHHHHHHHcCCHhHHH
Confidence            7    888888888876521                                1111122 25778888888888999999


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccc-cccccccCCCCcHHHHHHhcCCcchhhhhccccchh
Q 014436          298 TILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR-ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHAN  376 (424)
Q Consensus       298 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~-~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~  376 (424)
                      +|++.|.++ +.++..|.||||+|+..++.+++++|++.   | ++++.+|..|+||||+|+..++.+++++|++++|++
T Consensus       125 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             HHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTT---TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             HHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhc---CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999886 78899999999999999999999999998   6 889999999999999999999999999999558999


Q ss_pred             hhhhcCCCCchhhHHhh
Q 014436          377 YQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       377 ~~~~~~~g~t~l~~a~~  393 (424)
                      ++.+|..|+||+++|..
T Consensus       201 ~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          201 YDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             SCCBCTTSCBGGGGCSS
T ss_pred             CCccCCCCCcHHHHHHH
Confidence            99999999999999974

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.6e-37  Score=258.98  Aligned_cols=216  Identities=20%  Similarity=0.168  Sum_probs=196.8

Q ss_pred             CCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHH
Q 014436          152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL  231 (424)
Q Consensus       152 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~L  231 (424)
                      |+.+++++|+++|+++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..    ++.+++++|
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~L   77 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA----DAQGVFQIL   77 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHH
Confidence            6788899999999998877789999999999999999999999999999999999999999999999    999999999


Q ss_pred             HhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCcccccc
Q 014436          232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVD  311 (424)
Q Consensus       232 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~  311 (424)
                      ++.++..++..+..|.||||+|+..++.+++++|...+...+..+. .|.||||+|+..++.+++++|++.|+++ +.++
T Consensus        78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~  155 (223)
T 2f8y_A           78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGANK-DMQN  155 (223)
T ss_dssp             HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcC
Confidence            9998866788899999999999999999988888887777666665 8899999999999999999999999986 7889


Q ss_pred             CCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhh
Q 014436          312 NRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANY  377 (424)
Q Consensus       312 ~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~  377 (424)
                      ..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|++.++.+++++|++ +|+..
T Consensus       156 ~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~  217 (223)
T 2f8y_A          156 NREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR  217 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence            9999999999999999999999998   88999999999999999999999999999888 67653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-36  Score=259.05  Aligned_cols=191  Identities=20%  Similarity=0.207  Sum_probs=155.5

Q ss_pred             HhcCCCCcHHHHHHhCCCHHHHHHHhhcC--CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC--CCCCCCCCCCCcH
Q 014436          136 MVNNKKNTALHDAMFPGNMEVVKILTRED--PDYPYSANDYGKTPLYMAAESESSDMVLTLLENC--TSLSHEGPNGKTA  211 (424)
Q Consensus       136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~t~  211 (424)
                      ..|..|.||||+|+..|+.+++++|++++  .++....+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~  110 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC  110 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence            36788999999999999999999999999  5544337788999999999999999999999999  8889999999999


Q ss_pred             HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcC
Q 014436          212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG  291 (424)
Q Consensus       212 L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~  291 (424)
                      ||+|+..    ++.+++++|++.+.. ++..+.                                  .|.||||+|+..|
T Consensus       111 L~~A~~~----~~~~~~~~Ll~~g~~-~~~~~~----------------------------------~g~t~L~~A~~~~  151 (228)
T 2dzn_A          111 LHLAVGK----KWFEVSQFLIENGAS-VRIKDK----------------------------------FNQIPLHRAASVG  151 (228)
T ss_dssp             HHHHHHT----TCHHHHHHHHHTTCC-SCCCCT----------------------------------TSCCHHHHHHHTT
T ss_pred             HHHHHHc----CCHhHHHHHHHcCCC-ccccCC----------------------------------CCCCHHHHHHHcC
Confidence            9999998    999999999987655 333333                                  4567777777777


Q ss_pred             CHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhh-hCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436          292 HARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL-RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS  370 (424)
Q Consensus       292 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll-~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL  370 (424)
                      +.+++++|++.|+...+.+|..|+||||+|+..++.+++++|+ +.   |++++.+|..|+||||+|+..   +++++|+
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~---~~~~~l~  225 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNE---QVKKFFL  225 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSST---THHHHHH
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHH---HHHHHHH
Confidence            7778888888883334778888888888888888888888888 55   788888888888888888653   4454554


Q ss_pred             c
Q 014436          371 R  371 (424)
Q Consensus       371 ~  371 (424)
                      +
T Consensus       226 ~  226 (228)
T 2dzn_A          226 N  226 (228)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.1e-36  Score=255.33  Aligned_cols=228  Identities=21%  Similarity=0.196  Sum_probs=148.2

Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAA  215 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a  215 (424)
                      .|..|.|||+.|+..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            45667788888888888888888888887755 566778888888888888888888888887766443 3477888888


Q ss_pred             HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC-HH
Q 014436          216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH-AR  294 (424)
Q Consensus       216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~-~~  294 (424)
                      +..    ++.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|...+...+..+. .|.||||.|+..++ .+
T Consensus        84 ~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           84 TRQ----GHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHH----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHCCSST
T ss_pred             HHc----CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC-CCCcHHHHHHHhCChHH
Confidence            877    788888888877655 355566666666666666666655555555544444433 55566666664443 55


Q ss_pred             HHHHHHhhCCCccccccC-CCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcccc
Q 014436          295 TVETILSLAPECFELVDN-RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTT  373 (424)
Q Consensus       295 ~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~  373 (424)
                      ++++|++.|.++ +..+. .|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|++.++.+++++|++ +
T Consensus       158 ~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~  232 (240)
T 3eu9_A          158 PTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQE-A  232 (240)
T ss_dssp             THHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-H
T ss_pred             HHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-h
Confidence            666666666554 33443 566666666666666666666655   55566666666666666666666666655555 3


Q ss_pred             chh
Q 014436          374 HAN  376 (424)
Q Consensus       374 g~~  376 (424)
                      +++
T Consensus       233 ~~~  235 (240)
T 3eu9_A          233 RQA  235 (240)
T ss_dssp             C--
T ss_pred             hhc
Confidence            433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-36  Score=266.36  Aligned_cols=230  Identities=19%  Similarity=0.173  Sum_probs=203.7

Q ss_pred             hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC
Q 014436           89 LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP  168 (424)
Q Consensus        89 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  168 (424)
                      .++.+|..|.||||+|+..|+.++|++|+++|++++           ..  +|.||||+|+..|+.+++++|+++|++++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~   89 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-----------LL--ENEFPLHQAATLEDTKIVKILLFSGLDDS   89 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-----------CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----------CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            477889999999999999999999999999998843           33  58999999999999999999999999977


Q ss_pred             CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC-CcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCC
Q 014436          169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG-KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGW  247 (424)
Q Consensus       169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  247 (424)
                       ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..    ++.+++++|++.++...+  ...|.
T Consensus        90 -~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~--~~~g~  162 (285)
T 3kea_A           90 -QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML----NDVSIVSYFLSEIPSTFD--LAILL  162 (285)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT----TCHHHHHHHHTTSCTTCC--CSTHH
T ss_pred             -CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc----CCHHHHHHHHhCCCcccc--ccCCc
Confidence             678899999999999999999999999999999999999 7999999999    999999999999876422  22899


Q ss_pred             hHHHHHHhcCChhHHHHHhhccccccccccCCCchH-HHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCC
Q 014436          248 TPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTA-LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQ  326 (424)
Q Consensus       248 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~-l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~  326 (424)
                      ||||+|+..|+.+++++|...+...+..+. .|.|| ||+|+..++.+++++|++.|+++ +.++       +.|+..++
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~~-------~~a~~~~~  233 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTNTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDINI-YSAN-------LENVLLDD  233 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCTTCC-CBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTTT-------GGGGTTTC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-------hhhhhcCC
Confidence            999999999999999999888887777666 78887 99999999999999999999987 5555       35678999


Q ss_pred             ccchHHhhhCCccccccccccCCC
Q 014436          327 LQDLKPLLRNPFARILINEGDAKG  350 (424)
Q Consensus       327 ~~~~~~ll~~~~~~~~i~~~d~~g  350 (424)
                      .+++++|++.   |++++......
T Consensus       234 ~~iv~~Ll~~---g~~~~~~~~~~  254 (285)
T 3kea_A          234 AEIAKMIIEK---HVEYKSDSYTK  254 (285)
T ss_dssp             HHHHHHHHHH---HHHHTTCTTTT
T ss_pred             HHHHHHHHHc---CCCCCCccccc
Confidence            9999999998   77777655433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-37  Score=278.01  Aligned_cols=291  Identities=12%  Similarity=0.030  Sum_probs=190.5

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH---
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM---  133 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~---  133 (424)
                      ...+|+|.+      ..+++++|++.    +..++..+..|.|+++     |+.++|+.|+++|.+...........   
T Consensus        22 ~~~~~~~~~------~~dlv~~ll~~----ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~   86 (327)
T 1sw6_A           22 RTAGPIITF------THDLTSDFLSS----PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDS   86 (327)
T ss_dssp             ---CCEEEC------CTTCCCSTTTS----SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------
T ss_pred             ccccchhhh------cCchHHHHhhC----CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccc
Confidence            344555543      33556665554    6666666777777765     77777777777776532210000000   


Q ss_pred             ---HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCc
Q 014436          134 ---IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKT  210 (424)
Q Consensus       134 ---i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t  210 (424)
                         -........+.+|.|+..+..+++++|++.|.+++...+..|.||||+|+..|+.++|++|+++|++++.+|..|.|
T Consensus        87 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T  166 (327)
T 1sw6_A           87 SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES  166 (327)
T ss_dssp             -----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred             ccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence               00011112234577888888899999999999988547889999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccCCc---HHHHHHHHhhcCCcccccCCCCChHHHHHHh----cCChhHHHHHhhccccccccccCCCchH
Q 014436          211 ALHAAVMYFDFKGD---HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY----HGKYWINDLLEIDQTATNIADKDRKMTA  283 (424)
Q Consensus       211 ~L~~a~~~~~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~~~~~~~~~~~~t~  283 (424)
                      |||+|+..    ++   .++++.|+......++..+..|+||||+|+.    .|+.++++++............  +   
T Consensus       167 pLh~A~~~----g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~--~---  237 (327)
T 1sw6_A          167 CLVKAVKS----VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ--N---  237 (327)
T ss_dssp             HHHHHHHS----SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG--G---
T ss_pred             HHHHHHHh----cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc--c---
Confidence            99999997    76   5666777776644567788888888888887    6666766666543322111000  0   


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCc
Q 014436          284 LHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPS  363 (424)
Q Consensus       284 l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~  363 (424)
                               ..+...+...|.++ +.++..|.||||+|+.      +++|++.     +++.+|..|+||||+|+..|+.
T Consensus       238 ---------~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~  296 (327)
T 1sw6_A          238 ---------RPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNI  296 (327)
T ss_dssp             ---------CCEEEC-----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCH
T ss_pred             ---------hHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCH
Confidence                     00001123346675 7789999999999985      7888875     4899999999999999999999


Q ss_pred             chhhhhccccchhhhhhcCCCCchhhHHhh
Q 014436          364 EFNRYMSRTTHANYQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       364 ~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~  393 (424)
                      +++++||+ +|++++.+|..|+||||+|+.
T Consensus       297 ~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          297 SIVDALLD-YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHHHH-cCCCCcccCCCCCCHHHHHHh
Confidence            99999998 799999999999999999974

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.5e-35  Score=248.77  Aligned_cols=194  Identities=24%  Similarity=0.287  Sum_probs=97.9

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      |..|.||||+|+..|+.+++++|+++|++           ++..+..|.||||+|+..|+.+++++|+++++......+.
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   90 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASAD-----------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH   90 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            45555666666666666666666655555           3344555556666666666666666666555532334455


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA  253 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  253 (424)
                      .|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.. ++..+..|.||||+|
T Consensus        91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A  165 (223)
T 2f8y_A           91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV----NNVDAAVVLLKNGAN-KDMQNNREETPLFLA  165 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred             CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCcCHHHHH
Confidence            555666666666666666666666555555555555666655555    555555555555433 233333333333333


Q ss_pred             HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436          254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP  304 (424)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  304 (424)
                      +..++.+++++|...+...+..+. .|.||+++|+..++.+++++|++.|.
T Consensus       166 ~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          166 AREGSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCccccc-cCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            333333333333333322222222 33444444444444444444444443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-37  Score=277.89  Aligned_cols=258  Identities=9%  Similarity=0.000  Sum_probs=177.0

Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCC----
Q 014436           95 AKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYS----  170 (424)
Q Consensus        95 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----  170 (424)
                      ....+|+|    ....++|++|+++|++           ++..+..|.|+++     |+.+++++|+++|.+....    
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~-----------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~   80 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLK-----------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPT   80 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCC-----------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------
T ss_pred             cccccchh----hhcCchHHHHhhCCcc-----------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchH
Confidence            34455555    4566789999999998           6677889999987     8999999999998664310    


Q ss_pred             ------------CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCC-CCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          171 ------------ANDYGKTPLYMAAESESSDMVLTLLENCTSLSH-EGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       171 ------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                                  ......+..|.|+..+..++++.|++.|++++. +|..|.||||+|+..    ++.+++++|++.++.
T Consensus        81 a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~----g~~~~v~~Ll~~Gad  156 (327)
T 1sw6_A           81 SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI----ANLELVKHLVKHGSN  156 (327)
T ss_dssp             -----------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT----TCHHHHHHHHHTTCC
T ss_pred             hhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc----CCHHHHHHHHHcCCC
Confidence                        011112334777777888899999999999999 899999999999999    999999999999877


Q ss_pred             cccccCCCCChHHHHHHhcCC---hh-HHHHHhhccccccccccCCCchHHHHHHh----cCCHHHHHHHHhhCCCcccc
Q 014436          238 LLKVTDQYGWTPIHYAAYHGK---YW-INDLLEIDQTATNIADKDRKMTALHLAAG----RGHARTVETILSLAPECFEL  309 (424)
Q Consensus       238 ~~~~~~~~~~t~l~~a~~~~~---~~-~~~~l~~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~v~~Ll~~~~~~~~~  309 (424)
                       ++.++..|+||||+|+..|+   .+ +..++.......+..+. .|.||||+|+.    .|+.+++++|++.+..... 
T Consensus       157 -~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~-  233 (327)
T 1sw6_A          157 -RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV-  233 (327)
T ss_dssp             -TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-
T ss_pred             -CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh-
Confidence             58899999999999999887   44 44444444344455544 88899999998    8899999999887654311 


Q ss_pred             ccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhh
Q 014436          310 VDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGH  389 (424)
Q Consensus       310 ~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~  389 (424)
                                   ......+...+.+.   +++++.++..|+||||.|+.      +++|+. +  +++.+|..|+||||
T Consensus       234 -------------~~~~~~i~~~~~~~---g~~~~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh  288 (327)
T 1sw6_A          234 -------------KKQNRPIQSGTNEK---ESKPNDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLN  288 (327)
T ss_dssp             -------------HGGGCCEEEC-------------------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHH
T ss_pred             -------------cccchHHHhhhhcc---cCCcccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHH
Confidence                         11111222223333   88999999999999999996      778877 3  79999999999999


Q ss_pred             HHhhcCchhhHHHHHH
Q 014436          390 IMKYGYPELLVINLSI  405 (424)
Q Consensus       390 ~a~~~~~~~~~~~~~~  405 (424)
                      +|+.. ++..++++.+
T Consensus       289 ~A~~~-g~~~~v~~Ll  303 (327)
T 1sw6_A          289 IAARL-GNISIVDALL  303 (327)
T ss_dssp             HHHHH-CCHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHH
Confidence            99864 7778887444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.3e-36  Score=264.02  Aligned_cols=222  Identities=23%  Similarity=0.236  Sum_probs=187.4

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      ..+.++|+.||..|+.++|++|++.|.+.+..+..|.||||+|  +..|+.+++++|++.    +..++..|..|.||||
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL~  111 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPLH  111 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence            3556899999999999999999999998888888999999999  999999999999986    7888899999999999


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc-C-----------------
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE-D-----------------  164 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~-----------------  164 (424)
                      +|+..|+.+++++|+++|++           ++..+..|.||||+|+..++.+++++++.. +                 
T Consensus       112 ~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  180 (299)
T 1s70_B          112 AAASCGYLDIAEYLISQGAH-----------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD  180 (299)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCC-----------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHH
Confidence            99999999999999999998           567788999999999999999999877654 2                 


Q ss_pred             --------CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          165 --------PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       165 --------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                              .......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++.+.
T Consensus       181 ~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW----GKEEACRILVENLC  256 (299)
T ss_dssp             HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTC
T ss_pred             HHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc----CCHHHHHHHHHcCC
Confidence                    222334556788888888888888888888888888888888888888888888    88888888888876


Q ss_pred             CcccccCCCCChHHHHHHhcCChhHHHHHh
Q 014436          237 SLLKVTDQYGWTPIHYAAYHGKYWINDLLE  266 (424)
Q Consensus       237 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  266 (424)
                      + ++..|..|.||+++|+......+.+++.
T Consensus       257 d-~~~~d~~g~t~l~~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          257 D-MEAVNKVGQTAFDVADEDILGYLEELQK  285 (299)
T ss_dssp             C-TTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred             C-CCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6 5778888888888886543222444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.8e-36  Score=255.28  Aligned_cols=219  Identities=17%  Similarity=0.146  Sum_probs=186.9

Q ss_pred             HhcCCCCcHHHHHHhCCCHHHHHHHhhcCC----CCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436          136 MVNNKKNTALHDAMFPGNMEVVKILTREDP----DYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA  211 (424)
Q Consensus       136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~  211 (424)
                      .+|.+|.||||+|+..|+.+++++|++.+.    +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            467899999999999999999999998876    344 678889999999999999999999999999999999999999


Q ss_pred             HHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcC
Q 014436          212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG  291 (424)
Q Consensus       212 L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~  291 (424)
                      ||+|+..    ++.+++++|+..+... ...                           ...... ...|.||||+|+..|
T Consensus        82 L~~A~~~----~~~~~v~~Ll~~~~~~-~~~---------------------------~~~~~~-~~~g~t~L~~A~~~~  128 (236)
T 1ikn_D           82 LHLACEQ----GCLASVGVLTQSCTTP-HLH---------------------------SILKAT-NYNGHTCLHLASIHG  128 (236)
T ss_dssp             HHHHHHH----TCHHHHHHHHHSTTTT-SSS---------------------------CGGGCC-CTTCCCHHHHHHHTT
T ss_pred             HHHHHHc----CCHHHHHHHHhcccch-hHH---------------------------HHhhcc-CCCCCCHHHHHHHcC
Confidence            9999999    9999999999876542 100                           001122 237889999999999


Q ss_pred             CHHHHHHHHhhCCCccccccC-CCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc
Q 014436          292 HARTVETILSLAPECFELVDN-RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS  370 (424)
Q Consensus       292 ~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL  370 (424)
                      +.+++++|++.|+++ +.++. .|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.+++++|+
T Consensus       129 ~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  204 (236)
T 1ikn_D          129 YLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLG  204 (236)
T ss_dssp             CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence            999999999999997 66776 999999999999999999999998   9999999999999999999999999999998


Q ss_pred             cccchhhh--hhcCCCCchhhHHhh
Q 014436          371 RTTHANYQ--AVNDQNVSVGHIMKY  393 (424)
Q Consensus       371 ~~~g~~~~--~~~~~g~t~l~~a~~  393 (424)
                      + +|++..  .++..|+||.+.+..
T Consensus       205 ~-~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          205 Q-LTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             T-TSCGGGSSCCCCCTTTCCCCC--
T ss_pred             H-cchhhhhcCCccchHHHHhhhcc
Confidence            8 899877  889999999998753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=5e-34  Score=243.14  Aligned_cols=202  Identities=19%  Similarity=0.172  Sum_probs=161.4

Q ss_pred             CCHHHHHHHHcCCCchhHHHHHH-HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhh-----hhhccCCC
Q 014436           25 TDPKLLKAAADGNAEPFKDMARE-VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALL-----IQVNAKGD   98 (424)
Q Consensus        25 ~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~g~   98 (424)
                      +.|+||.|+..|+.++|++|++. |.+.+..+..|.||||+|  +..|+.+++++|++.    +..+     +..|..|.
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~~g~   76 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA--ALYDNLEAAMVLMEA----APELVFEPMTSELYEGQ   76 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----CGGGGGCCCCSTTTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CchhccccccccCCCCc
Confidence            67899999999999999999997 888888889999999999  999999999999997    4333     55677999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHH--HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEA--ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      ||||+|+..|+.+++++|+++|++.......  .....+..|..|.||||+|+..|+.+++++|+++|++++ ..|..|.
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~  155 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLGN  155 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence            9999999999999999999999885421100  000001123368888888888888888888888888765 6677788


Q ss_pred             cHHHHHHhcCChHHH----HHHHHhCCCC------CCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCC
Q 014436          177 TPLYMAAESESSDMV----LTLLENCTSL------SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       177 t~L~~A~~~~~~~~v----~~Ll~~~~~~------~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      ||||+|+..++.+++    ++|+++|+++      +.+|..|.||||+|+..    ++.+++++|+++++.
T Consensus       156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~----g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE----GNIVMFQHLMQKRKH  222 (232)
T ss_dssp             CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc----CCHHHHHHHHhcCcc
Confidence            888888888888777    8888888776      46777888888888887    888888888877654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-34  Score=231.96  Aligned_cols=159  Identities=28%  Similarity=0.402  Sum_probs=132.6

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ++|+.||..|+.++|+.|++.|++++..+..|.||||+|  +..++.+++++|++.    +.+++.+|..|.||||+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhc----ccchhhhccCCCCHHHHHHH
Confidence            468889999999999999998888888888889999998  888888888888875    77788888888899999998


Q ss_pred             cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcC
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE  186 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  186 (424)
                      .|+.++|++|+++|++           ++.+|.+|+||||+|+..|+.+++++|+++|++++ ..+..|+||||+|+..|
T Consensus        80 ~g~~~~v~~Ll~~gad-----------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           80 NGHKEVVKLLISKGAD-----------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             TTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCcCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcC
Confidence            8888999999888887           66778888899999888888889998888888866 67888888999988888


Q ss_pred             ChHHHHHHHHhCCCCCC
Q 014436          187 SSDMVLTLLENCTSLSH  203 (424)
Q Consensus       187 ~~~~v~~Ll~~~~~~~~  203 (424)
                      +.+++++|+++|++++.
T Consensus       148 ~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          148 NEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHHTC------
T ss_pred             CHHHHHHHHHCCCCcCC
Confidence            88888888888888764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.5e-35  Score=248.83  Aligned_cols=216  Identities=18%  Similarity=0.155  Sum_probs=157.4

Q ss_pred             cCCCHHHHHHHHcCCCchhHHHHHHHHH----HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC
Q 014436           23 SQTDPKLLKAAADGNAEPFKDMAREVIE----SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD   98 (424)
Q Consensus        23 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~   98 (424)
                      +.+.|+||+|+..|+.+++++|++.+..    .+..+..|.||||+|  +..|+.+++++|++.    +..++.+|..|.
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~   79 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGN   79 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCC
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCC
Confidence            4567778888888888888888887663    346666788888888  888888888887764    666777778888


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC-CCCc
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND-YGKT  177 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t  177 (424)
                      ||||+|+..|+.+++++|++.+++......     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+. .|.|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t  153 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSI-----LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRT  153 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCG-----GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHH-----hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCC
Confidence            888888888888888888887764221110     34566778888888888888888888888888766 4443 7888


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcc-cccCCCCChHHHHHH
Q 014436          178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL-KVTDQYGWTPIHYAA  254 (424)
Q Consensus       178 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~-~~~~~~~~t~l~~a~  254 (424)
                      |||+|+..|+.+++++|+++|++++.++..|.|||++|+..    ++.+++++|++.++... ..++..+.|+...+.
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS----SCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc----CchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            88888888888888888888888888888888888888877    88888888888776532 345666666655443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.2e-33  Score=245.20  Aligned_cols=210  Identities=18%  Similarity=0.192  Sum_probs=169.8

Q ss_pred             ccCCCHHHHHHHHcCCCchhHHHHHHHHHHh--------hccccCCcchhhhhhhHH---hhhccHHHHHHHHHhCchh-
Q 014436           22 QSQTDPKLLKAAADGNAEPFKDMAREVIESL--------LTLQTRNTILHINIMCQD---AENASTKFVEEILEICPAL-   89 (424)
Q Consensus        22 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~t~L~~A~~~~~---~~~~~~~~l~~~~~~~~~~-   89 (424)
                      ...+.++||.||..|+.++|+.|++.+.+..        ..+..|.||||+|  +..   |+.+++++|++.....+.. 
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhccccchh
Confidence            4567899999999999999999999877543        2367899999999  876   9999999999984432211 


Q ss_pred             --hhh----hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC--------------CCCcHHHHHH
Q 014436           90 --LIQ----VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN--------------KKNTALHDAM  149 (424)
Q Consensus        90 --~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~--------------~g~t~L~~A~  149 (424)
                        ++.    .|..|.||||+|+..|+.++|++|+++|++           ++..+.              .|.||||+|+
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-----------VQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------cCccccccccccccccccccCCCCHHHHHH
Confidence              222    567899999999999999999999999998           445555              7999999999


Q ss_pred             hCCCHHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHhcCC---------hHHHHHHHHhCCCCC-------CCCCCCCc
Q 014436          150 FPGNMEVVKILTR---EDPDYPYSANDYGKTPLYMAAESES---------SDMVLTLLENCTSLS-------HEGPNGKT  210 (424)
Q Consensus       150 ~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~~~t  210 (424)
                      ..|+.+++++|++   .|++++ ..+..|+||||+|+..++         .+++++|+++|++++       .+|..|.|
T Consensus       157 ~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T  235 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT  235 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred             HcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Confidence            9999999999999   888876 788889999999999888         789999999998886       48899999


Q ss_pred             HHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436          211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP  249 (424)
Q Consensus       211 ~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  249 (424)
                      |||+|+..    ++.+++++|++.++.+.......+.+|
T Consensus       236 pL~~A~~~----g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          236 PLALAASS----GKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHHT----TCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHHh----ChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            99999998    999999999999986656665555554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.1e-33  Score=242.90  Aligned_cols=195  Identities=19%  Similarity=0.170  Sum_probs=163.7

Q ss_pred             CCHHHHHHHHcCCCchhHHHH----HHHHHHhh----ccccCCcchhhhhhhHH---hhhccHHHHHHHHHhCch---hh
Q 014436           25 TDPKLLKAAADGNAEPFKDMA----REVIESLL----TLQTRNTILHINIMCQD---AENASTKFVEEILEICPA---LL   90 (424)
Q Consensus        25 ~~~~l~~A~~~g~~~~v~~ll----~~~~~~~~----~~~~g~t~L~~A~~~~~---~~~~~~~~l~~~~~~~~~---~~   90 (424)
                      +.|+||.||..|+.+.|+.|+    +.|.+.+.    .+..|.||||+|  +..   |+.+++++|++.......   .+
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHhcCCcccchhhhc
Confidence            568999999999998665555    46776665    788999999999  999   999999999998333210   01


Q ss_pred             h----hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCC-------------CCcHHHHHHhCCC
Q 014436           91 I----QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK-------------KNTALHDAMFPGN  153 (424)
Q Consensus        91 ~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~-------------g~t~L~~A~~~~~  153 (424)
                      +    ..|..|.||||+|+..|+.+++++|+++|++           ++..+..             |.||||+|+..|+
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-----------VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCcccccccccccccccccCCCCHHHHHHHcCC
Confidence            1    2346799999999999999999999999998           4455554             9999999999999


Q ss_pred             HHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHh--cCChH-------HHHHHHHhCCCC-------CCCCCCCCcHHHH
Q 014436          154 MEVVKILTR---EDPDYPYSANDYGKTPLYMAAE--SESSD-------MVLTLLENCTSL-------SHEGPNGKTALHA  214 (424)
Q Consensus       154 ~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~~~t~L~~  214 (424)
                      .+++++|++   .|++++ ..+..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+
T Consensus       149 ~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  227 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL  227 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence            999999999   888876 778889999999998  77887       999999999888       8889999999999


Q ss_pred             HHHccccCCcHHHHHHHHhhcCC
Q 014436          215 AVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       215 a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      |+..    ++.+++++|++++..
T Consensus       228 A~~~----g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          228 AAKE----GKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHT----TCHHHHHHHHHHHHH
T ss_pred             HHHh----CCHHHHHHHHhCCCC
Confidence            9998    999999999988754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.7e-33  Score=244.63  Aligned_cols=228  Identities=23%  Similarity=0.234  Sum_probs=161.6

Q ss_pred             HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhh----hhccCCCcHHHHHHHc---CcHHHHHHHHHhchhc
Q 014436           51 SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLI----QVNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLA  123 (424)
Q Consensus        51 ~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~  123 (424)
                      ....+..|.|+||+|  ++.|+.++++.|++.+...+..++    ..|..|.||||+|+..   |+.++|++|+++|++.
T Consensus         6 ~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -----CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             CCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            346677999999999  999999999999998666565554    3578999999999987   9999999999999864


Q ss_pred             ccchHHHHHHHHH----hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC--------------CCCcHHHHHHhc
Q 014436          124 QDGDEAARQMIRM----VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND--------------YGKTPLYMAAES  185 (424)
Q Consensus       124 ~~~~~~~~~~i~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~  185 (424)
                      ...    +..++.    .|..|.||||+|+..|+.+++++|+++|++++ ..+.              .|.||||+|+..
T Consensus        84 ~~~----~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           84 DSL----KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             TCH----HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             cch----hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHc
Confidence            321    111232    56689999999999999999999999999876 4443              699999999999


Q ss_pred             CChHHHHHHHH---hCCCCCCCCCCCCcHHHHHHHccccCCc---------HHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436          186 ESSDMVLTLLE---NCTSLSHEGPNGKTALHAAVMYFDFKGD---------HHAMRQLFGRKKSLLKVTDQYGWTPIHYA  253 (424)
Q Consensus       186 ~~~~~v~~Ll~---~~~~~~~~~~~~~t~L~~a~~~~~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  253 (424)
                      |+.+++++|++   +|++++.+|..|.||||+|+..    ++         .+++++|+..++.. +....         
T Consensus       159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~----~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~~~---------  224 (273)
T 2pnn_A          159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV----ADNTVDNTKFVTSMYNEILILGAKL-HPTLK---------  224 (273)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHHHH-CTTCC---------
T ss_pred             CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc----cCcchhHHHHHHHHHHHHHHhhhhc-ccccc---------
Confidence            99999999999   8999999999999999999987    65         56777777665442 21000         


Q ss_pred             HhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcH
Q 014436          254 AYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNF  317 (424)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  317 (424)
                                       .....+ ..|.||||+|+..|+.+++++|+++|+.........+.+|
T Consensus       225 -----------------~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          225 -----------------LEEITN-RKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             -----------------GGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             -----------------cccccC-CCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence                             001122 2556666666666666666666666663324344444333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.4e-31  Score=222.69  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=155.0

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436          139 NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       139 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                      ..+.||||.|+..|+.+.++.|+..+.......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            46789999999999999999999988733447788899999999999999999999999999999999999999999998


Q ss_pred             cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHH
Q 014436          219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVET  298 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~  298 (424)
                          ++.+++++|+......++..+.                                  .|.||||.|+..++.+++++
T Consensus        83 ----~~~~~~~~Ll~~~~~~~~~~~~----------------------------------~g~t~L~~A~~~~~~~~v~~  124 (201)
T 3hra_A           83 ----GRTEILAYMLKHATPDLNKHNR----------------------------------YGGNALIPAAEKGHIDNVKL  124 (201)
T ss_dssp             ----TCHHHHHHHHHHSCCCTTCCCT----------------------------------TSCCSHHHHHHTTCHHHHHH
T ss_pred             ----CCHHHHHHHHhccCcccccccC----------------------------------CCCcHHHHHHHcCCHHHHHH
Confidence                9999999998766544444443                                  45566666666677777777


Q ss_pred             HHhhCCCccccccCCCCcHHHHHHHcCC-----ccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          299 ILSLAPECFELVDNRRWNFLHYAVASFQ-----LQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       299 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      |++.|+...+.++..|+||||+|+..++     .+++++|++.   |++++.+|..|+||||+|++.++.+++++|++
T Consensus       125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            7777733347777888888888888777     7788888887   77888888888888888888888888887776

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7e-32  Score=224.51  Aligned_cols=197  Identities=17%  Similarity=0.204  Sum_probs=163.9

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhch-hcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAK-LAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      +..+.||||.|+..|+.+.++.|++.+. +           ++..|..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   69 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQN   69 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence            3568899999999999999999999887 4           66788899999999999999999999999999976 788


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHH-HhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLL-ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIH  251 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~  251 (424)
                      ..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+..    ++.+++++|++.+...++..+..|.||||
T Consensus        70 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----GHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT----TCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc----CCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            88999999999999999999999 55579999999999999999999    99999999999985556777777777777


Q ss_pred             HHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchH
Q 014436          252 YAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLK  331 (424)
Q Consensus       252 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~  331 (424)
                      +|+..+..                             ..++.+++++|++.|+++ +.+|..|+||||+|+..++.++++
T Consensus       146 ~A~~~~~~-----------------------------~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          146 EAVGLREG-----------------------------NQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             HHHHSSCC-----------------------------SHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHhccc-----------------------------hhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHH
Confidence            77766541                             011256677777777665 666777777777777777777777


Q ss_pred             HhhhC
Q 014436          332 PLLRN  336 (424)
Q Consensus       332 ~ll~~  336 (424)
                      +|+++
T Consensus       196 ~Ll~~  200 (201)
T 3hra_A          196 ILAQY  200 (201)
T ss_dssp             HHHTC
T ss_pred             HHHhc
Confidence            77664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.6e-33  Score=240.26  Aligned_cols=204  Identities=24%  Similarity=0.194  Sum_probs=155.9

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhh----hccCCCcHHHHHHHc---CcHHHHHHHHHhchhcccchHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQ----VNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLAQDGDEA  129 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~  129 (424)
                      .|.||||+|  +..|+.+.++.|++.+...+..++.    .|..|.||||+|+..   |+.+++++|++.|++.......
T Consensus         1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            478999999  9999999887777766555778887    899999999999999   9999999999999874321100


Q ss_pred             HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC-------------CCcHHHHHHhcCChHHHHHHHH
Q 014436          130 ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY-------------GKTPLYMAAESESSDMVLTLLE  196 (424)
Q Consensus       130 ~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~  196 (424)
                      ........|..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            000001234679999999999999999999999999976 44443             9999999999999999999999


Q ss_pred             ---hCCCCCCCCCCCCcHHHHHHH--ccccCCcHH-------HHHHHHhhcCCcc------cccCCCCChHHHHHHhcCC
Q 014436          197 ---NCTSLSHEGPNGKTALHAAVM--YFDFKGDHH-------AMRQLFGRKKSLL------KVTDQYGWTPIHYAAYHGK  258 (424)
Q Consensus       197 ---~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~-------~~~~Ll~~~~~~~------~~~~~~~~t~l~~a~~~~~  258 (424)
                         +|++++.+|..|.||||+|+.  .    ++.+       ++++|++.++...      +.+|..|.||||+|+..|+
T Consensus       158 ~~~~ga~~n~~d~~g~TpLh~A~~~~~----~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          158 NPHQPASLEATDSLGNTVLHALVMIAD----NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             ccccCCCcCccCCCCCCHHHHHHHccc----CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence               899999999999999999998  5    7777       7888887765421      3344444444444444444


Q ss_pred             hhHHHHHhh
Q 014436          259 YWINDLLEI  267 (424)
Q Consensus       259 ~~~~~~l~~  267 (424)
                      .+++++|.+
T Consensus       234 ~~~v~~Ll~  242 (256)
T 2etb_A          234 IEIFRHILQ  242 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            444444433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=9.7e-32  Score=215.21  Aligned_cols=155  Identities=27%  Similarity=0.365  Sum_probs=89.9

Q ss_pred             chhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCC
Q 014436           61 ILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNK  140 (424)
Q Consensus        61 ~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~  140 (424)
                      .|+.|  ++.|+.+++++|++.    +.+++.+|..|.||||+|+..++.+++++|+++|++           ++.+|.+
T Consensus         7 ~L~~A--a~~G~~~~v~~Ll~~----Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----------~~~~d~~   69 (169)
T 4gpm_A            7 RLIEA--AENGNKDRVKDLIEN----GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----------VNAKDSD   69 (169)
T ss_dssp             HHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTT
T ss_pred             HHHHH--HHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----------hhhhccC
Confidence            35555  666666666665553    555555566666666666666666666666666555           4445555


Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD  220 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~  220 (424)
                      |.||||+|+..|+.+++++|+++|++++ .++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..  
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--  146 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH--  146 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--
Confidence            6666666666666666666666665544 4555566666666666666666666666666666666666666666655  


Q ss_pred             cCCcHHHHHHHHhhcCC
Q 014436          221 FKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~  237 (424)
                        ++.+++++|++.|+.
T Consensus       147 --g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          147 --GNEEVVKLLEKQGGW  161 (169)
T ss_dssp             --TCHHHHHHHHTC---
T ss_pred             --CCHHHHHHHHHCCCC
Confidence              556666666655544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.1e-32  Score=237.28  Aligned_cols=196  Identities=18%  Similarity=0.209  Sum_probs=165.2

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHH----HHHHHhhcc----ccCCcchhhhhhh---HHhhhccHHHHHHHHHhCch----
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAR----EVIESLLTL----QTRNTILHINIMC---QDAENASTKFVEEILEICPA----   88 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~L~~A~~~---~~~~~~~~~~l~~~~~~~~~----   88 (424)
                      .+.++||.||..|+.+.|+.|++    .|.+....+    ..|.||||+|  +   +.|+.+++++|++.......    
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            35688999999999998888887    565544333    5699999999  7   78999999999998543221    


Q ss_pred             ---hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhc--------------CCCCcHHHHHHhC
Q 014436           89 ---LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN--------------NKKNTALHDAMFP  151 (424)
Q Consensus        89 ---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~--------------~~g~t~L~~A~~~  151 (424)
                         ..+..|..|.||||+|+..|+.++|++|+++|++           ++..+              ..|.||||+|+..
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  150 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-----------VHAQARGRFFQPKDEGGYFYFGELPLSLAACT  150 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-----------cCccccccccCcccccccccCCCCHHHHHHHc
Confidence               2234455899999999999999999999999998           45555              5799999999999


Q ss_pred             CCHHHHHHHhh---cCCCCCCCCCCCCCcHHHHHHhcCC---------hHHHHHHHHhCCCC-------CCCCCCCCcHH
Q 014436          152 GNMEVVKILTR---EDPDYPYSANDYGKTPLYMAAESES---------SDMVLTLLENCTSL-------SHEGPNGKTAL  212 (424)
Q Consensus       152 ~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~-------~~~~~~~~t~L  212 (424)
                      |+.+++++|++   .|++++ ..+..|+||||+|+..++         .+++++|+++|+++       +.+|..|.|||
T Consensus       151 g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          151 NQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             TCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred             CCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence            99999999999   888876 778889999999998777         68999999999887       67889999999


Q ss_pred             HHHHHccccCCcHHHHHHHHhhcCC
Q 014436          213 HAAVMYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       213 ~~a~~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      |+|+..    ++.+++++|+++++.
T Consensus       230 ~~A~~~----g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          230 MMAAKT----GKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHHT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHc----CCHHHHHHHHHhCCC
Confidence            999998    999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.9e-32  Score=236.42  Aligned_cols=207  Identities=24%  Similarity=0.244  Sum_probs=157.5

Q ss_pred             ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhc----cCCCcHHHHHH---HcCcHHHHHHHHHhchhcccchH
Q 014436           56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVN----AKGDTPLHVAA---KFGHSDIVRVLIDRAKLAQDGDE  128 (424)
Q Consensus        56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~  128 (424)
                      ..+.++||.|  ++.|+.+.++.|++.+...+..++..+    ..|.||||+|+   ..|+.+++++|++.|++......
T Consensus         3 ~~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            4688999999  999999998888886665566676555    67999999999   77999999999999987432211


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC--------------CCCCcHHHHHHhcCChHHHHHH
Q 014436          129 AARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN--------------DYGKTPLYMAAESESSDMVLTL  194 (424)
Q Consensus       129 ~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~L  194 (424)
                      .....++..|..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            1111122344589999999999999999999999999977 444              5799999999999999999999


Q ss_pred             HH---hCCCCCCCCCCCCcHHHHHHHccccCCc---------HHHHHHHHhhcCCcc------cccCCCCChHHHHHHhc
Q 014436          195 LE---NCTSLSHEGPNGKTALHAAVMYFDFKGD---------HHAMRQLFGRKKSLL------KVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       195 l~---~~~~~~~~~~~~~t~L~~a~~~~~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~~~t~l~~a~~~  256 (424)
                      ++   +|++++.+|..|.||||+|+..    ++         .+++++|++.++...      +..+..|.||||+|+..
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh~A~~~----~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLHALVAI----ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HhccccCCCCcccCCCCCcHHHHHHHh----ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            99   8999999999999999999987    55         577888887765421      23444555555555555


Q ss_pred             CChhHHHHHhhcc
Q 014436          257 GKYWINDLLEIDQ  269 (424)
Q Consensus       257 ~~~~~~~~l~~~~  269 (424)
                      |+.+++++|.+++
T Consensus       236 g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          236 GKIGIFQHIIRRE  248 (260)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhC
Confidence            5444444444333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=230.15  Aligned_cols=195  Identities=19%  Similarity=0.183  Sum_probs=175.0

Q ss_pred             ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhch-hcccchHHHHHHH
Q 014436           56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAK-LAQDGDEAARQMI  134 (424)
Q Consensus        56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~i  134 (424)
                      ..+.+++|.|  +..++.+.++.+++...  ...++..|..|.||||+|+..|+.++|++|++.|+ +           +
T Consensus        74 ~~~~~~l~~a--~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~-----------~  138 (276)
T 4hbd_A           74 LACRSDAHPE--LVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-----------V  138 (276)
T ss_dssp             HHHSTTCCHH--HHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC-----------T
T ss_pred             HHhccCCCHH--HHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-----------C
Confidence            3577999999  99999999999988643  23478899999999999999999999999999998 5           6


Q ss_pred             HHhcCCCCcHHHHHH-----hCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCC
Q 014436          135 RMVNNKKNTALHDAM-----FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK  209 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  209 (424)
                      +..+..|.||||+|+     ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus       139 ~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~  217 (276)
T 4hbd_A          139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS  217 (276)
T ss_dssp             TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            778899999999999     5688999999999997755 7788899999999999999999999999999999999999


Q ss_pred             cHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccc
Q 014436          210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQT  270 (424)
Q Consensus       210 t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~  270 (424)
                      ||||+|+..    ++.+++++|+...+.+++..|..|.|||++|+..|+.+++++|.....
T Consensus       218 TpLh~A~~~----g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          218 TALMCACEH----GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CHHHHHHHH----TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CHHHHHHHC----CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999    999999999994444468999999999999999999999888876654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=3e-33  Score=252.14  Aligned_cols=283  Identities=13%  Similarity=0.051  Sum_probs=184.1

Q ss_pred             CcchhhhhhhH-HhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh
Q 014436           59 NTILHINIMCQ-DAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV  137 (424)
Q Consensus        59 ~t~L~~A~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~  137 (424)
                      .+++++|  .. .++.+.++++.+.           +.++.||||+|+..|+.++|++|+++|+....        ....
T Consensus        66 ll~~~~a--~~~~~~~~~~~~l~~~-----------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~--------~~~~  124 (376)
T 2aja_A           66 LLCLYYA--HYNRNAKQLWSDAHKK-----------GIKSEVICFVAAITGCSSALDTLCLLLTSDEI--------VKVI  124 (376)
T ss_dssp             HHHHHHH--HTTTTCTTHHHHHHHH-----------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS--------CC--
T ss_pred             HHHHHHH--HhcCCCHHHHHHHHHc-----------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH--------HHHh
Confidence            3556665  44 4666777777664           34556999999999999999999998872110        0122


Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC--CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCC--CCCCCCcHHH
Q 014436          138 NNKKNTALHDAMFPGNMEVVKILTREDPDYP--YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSH--EGPNGKTALH  213 (424)
Q Consensus       138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~t~L~  213 (424)
                      +..|.||||+|+..|+.+++++|+++|++..  ...+.+ .||||+|+..|+.++|++|+++|++++.  .+..|.||||
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~  203 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR  203 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHH
Confidence            3345689999999999999999999986421  012222 8999999999999999999999988776  7778899999


Q ss_pred             HHH-HccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC
Q 014436          214 AAV-MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH  292 (424)
Q Consensus       214 ~a~-~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~  292 (424)
                      +|+ ..    |+.+++++|++.++        .|.||++.|+..|+.+++++|...+...+..+     ++++.|+..|+
T Consensus       204 ~Aa~~~----G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~-----~~l~~A~~~g~  266 (376)
T 2aja_A          204 WAAVGR----GHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH-----DAFKLSNPDGV  266 (376)
T ss_dssp             HHHSTT----CCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH-----TTTTTTSSSSC
T ss_pred             HHHHHC----CCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc-----HHHHHHHHCCC
Confidence            999 88    99999999998552        27789999999998888888887766543322     36677777776


Q ss_pred             HHH------------HHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436          293 ART------------VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV  360 (424)
Q Consensus       293 ~~~------------v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  360 (424)
                      .++            ++.++..+..          +.+..+-.-.+.+.++.++..   |+++    ..+.||||+|+..
T Consensus       267 ~~vv~~~~~~~~~~~~~~li~~~~~----------~~~~~~~~Ll~~~~vk~l~~~---g~~~----n~~~~~L~~A~~~  329 (376)
T 2aja_A          267 FDLVTKSECLQGFYMLRNLIRRNDE----------VLLDDIRFLLSIPGIKALAPT---ATIP----GDANELLRLALRL  329 (376)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHCCG----------GGHHHHHHHHTSTTTGGGSSC---CSST----TCCCHHHHHHHHH
T ss_pred             hhhhcHHhhhhhHHHHHHHHHcchh----------hHHHHHHHHHhChhhhhhhcc---CCCC----CCccHHHHHHHHc
Confidence            553            3445554421          111111111122233333333   4433    3567999999999


Q ss_pred             CCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436          361 RPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       361 ~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      |+.++++.|+. .|   ..++..|+|++.+|..+ ++.++..
T Consensus       330 g~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~-~~~~~~~  366 (376)
T 2aja_A          330 GNQGACALLLS-IP---SVLALTKANNYYINETG-GRLDLRA  366 (376)
T ss_dssp             TCTTHHHHHTT-SH---HHHHSCC------------------
T ss_pred             CcHHHHHHHHc-Ch---HHHHHHHHhcccccccc-ccccHHH
Confidence            99999999997 43   78899999999998754 6666654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.7e-30  Score=211.16  Aligned_cols=161  Identities=21%  Similarity=0.211  Sum_probs=109.7

Q ss_pred             hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHH
Q 014436           53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ  132 (424)
Q Consensus        53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  132 (424)
                      ..+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++          
T Consensus        30 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   93 (192)
T 2rfm_A           30 YRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN----------   93 (192)
T ss_dssp             CCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred             CcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence            4566677777777  777777777777665    445556666677777777777777777777777665          


Q ss_pred             HHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHH
Q 014436          133 MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL  212 (424)
Q Consensus       133 ~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L  212 (424)
                       ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        94 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  171 (192)
T 2rfm_A           94 -VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE  171 (192)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             -CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence             44556667777777777777777777777766654 5566677777777777777777777777777777777777777


Q ss_pred             HHHHHccccCCcHHHHHHHHhhc
Q 014436          213 HAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       213 ~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      ++|+..    ++.+++++|++.+
T Consensus       172 ~~A~~~----~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          172 ASARIF----GRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHT----TCHHHHHHHHHHH
T ss_pred             HHHHHh----CcHHHHHHHHhcc
Confidence            777766    6777777666543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5e-31  Score=213.52  Aligned_cols=170  Identities=23%  Similarity=0.243  Sum_probs=125.0

Q ss_pred             CCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHh
Q 014436           58 RNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV  137 (424)
Q Consensus        58 g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~  137 (424)
                      +.+|||+|  +..|+.++++++++.   .+..++..|..|.||||+|+..|+.+++++|+++|++           ++..
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~   65 (172)
T 3v30_A            2 DSLSIHQL--AAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----------PHIL   65 (172)
T ss_dssp             --CCHHHH--HHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----------TTCC
T ss_pred             chhhHHHH--HHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------chhh
Confidence            45777888  777777777777664   3444677777888888888888888888888888777           5566


Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436          138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM  217 (424)
Q Consensus       138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~  217 (424)
                      +..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A           66 AKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            7778888888888888888888888887765 667778888888888888888888888888888888888888888888


Q ss_pred             ccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436          218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP  249 (424)
Q Consensus       218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  249 (424)
                      .    ++.+++++|++.+... ...+..+.||
T Consensus       145 ~----~~~~~~~~L~~~~~~~-~~~~~~~~~p  171 (172)
T 3v30_A          145 L----GYRKVQQVIENHILKL-FQSNLVPADP  171 (172)
T ss_dssp             H----TCHHHHHHHHHHHHHH-SCC-------
T ss_pred             h----CcHHHHHHHHHHHHHH-hcccCCCCCC
Confidence            7    8888888888777653 4555555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=221.16  Aligned_cols=194  Identities=23%  Similarity=0.251  Sum_probs=174.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      .+.+++|.|+..|+.+.++.+++.+.+.         .++..|..|.||||+|+..|+.+++++|++.|+......+..|
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~---------~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g  145 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDY---------VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG  145 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHH---------HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhh---------cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC
Confidence            3568899999999999999999987652         2778899999999999999999999999999983344889999


Q ss_pred             CcHHHHHH-----hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHH
Q 014436          176 KTPLYMAA-----ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI  250 (424)
Q Consensus       176 ~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l  250 (424)
                      .||||+|+     ..++.+++++|++.|.+.+..+..|.||||+|+..    ++.+++++|++.+++ ++.+|..|.|||
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~gad-~n~~d~~G~TpL  220 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH----GRVDVVKALLACEAD-VNVQDDDGSTAL  220 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc----CCHHHHHHHHhCCCC-CCCCCCCCCCHH
Confidence            99999999     66889999999999999999999999999999999    999999999999877 588999999999


Q ss_pred             HHHHhcCChhHHHHHhh-ccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCC
Q 014436          251 HYAAYHGKYWINDLLEI-DQTATNIADKDRKMTALHLAAGRGHARTVETILSLAP  304 (424)
Q Consensus       251 ~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~  304 (424)
                      |+|+..|+.+++++|.. .+...+..+. .|.||||+|+..|+.+++++|++++.
T Consensus       221 h~A~~~g~~~iv~~Ll~~~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          221 MCACEHGHKEIAGLLLAVPSCDISLTDR-DGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHTCHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCCCcCcCC-CCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            99999999999998887 6766666665 89999999999999999999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=6.8e-31  Score=210.56  Aligned_cols=159  Identities=19%  Similarity=0.165  Sum_probs=123.8

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV  103 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (424)
                      ...++|+.|+..|+.+++++|++.|.+.+..+..|.||||+|  +. |+.+++++|++.    +..++.++..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLLR----GANPDLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            455778888888888888888887777767777788888888  77 888888888775    66677777788888888


Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHH
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA  183 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  183 (424)
                      |+..|+.+++++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|++.....+..|.||||+|+
T Consensus        77 A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQAD-----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  145 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence            8888888888888888776           55667788888888888888888888888887754467777888888888


Q ss_pred             hcCChHHHHHHHHhCCC
Q 014436          184 ESESSDMVLTLLENCTS  200 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~  200 (424)
                      ..|+.+++++|+++|++
T Consensus       146 ~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          146 LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HTTCHHHHHHHHHTC--
T ss_pred             HcCCHHHHHHHHHhCCC
Confidence            88888888888888764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9.1e-30  Score=206.06  Aligned_cols=167  Identities=19%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHH-HhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIE-SLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA  105 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  105 (424)
                      ++||.||..|+.+.+++|++.+.+ ....+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSLAS   77 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHHH
Confidence            456666666666666666665554 234555666666666  666666666666654    4555555666666666666


Q ss_pred             HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhc
Q 014436          106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAES  185 (424)
Q Consensus       106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  185 (424)
                      ..|+.+++++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..
T Consensus        78 ~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~  145 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD-----------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVAL  145 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHh
Confidence            66666666666666655           44555566666666666666666666666666644 4555566666666666


Q ss_pred             CChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436          186 ESSDMVLTLLENCTSLSHEGPNGKTA  211 (424)
Q Consensus       186 ~~~~~v~~Ll~~~~~~~~~~~~~~t~  211 (424)
                      ++.+++++|+++++++...+..+.||
T Consensus       146 ~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          146 GYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             TCHHHHHHHHHHHHHHSCC-------
T ss_pred             CcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            66666666666665555555544443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.8e-29  Score=207.06  Aligned_cols=163  Identities=21%  Similarity=0.243  Sum_probs=149.1

Q ss_pred             hhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC
Q 014436           89 LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYP  168 (424)
Q Consensus        89 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  168 (424)
                      .++.+|..|.||||+|+..|+.+++++|++.|++           ++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   95 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----------LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN   95 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----------cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            4566899999999999999999999999999987           56778899999999999999999999999999976


Q ss_pred             CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436          169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT  248 (424)
Q Consensus       169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  248 (424)
                       ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.+.. ++..+..|.|
T Consensus        96 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t  169 (192)
T 2rfm_A           96 -TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY----GRSEIVKKLLELGAD-ISARDLTGLT  169 (192)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             -CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence             7788899999999999999999999999999999999999999999999    999999999998776 5788888889


Q ss_pred             HHHHHHhcCChhHHHHHhhc
Q 014436          249 PIHYAAYHGKYWINDLLEID  268 (424)
Q Consensus       249 ~l~~a~~~~~~~~~~~l~~~  268 (424)
                      |+++|+..|+.+++++|.+.
T Consensus       170 ~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          170 AEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHhc
Confidence            99999888888887777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.8e-29  Score=203.20  Aligned_cols=159  Identities=21%  Similarity=0.217  Sum_probs=115.6

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      .|.||||+|  +..|+.+++++|++.    +..++..|..|.||||+|+..|+.+++++|+++|++           ++.
T Consensus         2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~   64 (167)
T 3v31_A            2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----------PQL   64 (167)
T ss_dssp             TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred             CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----------CCC
Confidence            466777777  777777777777765    455666777777777777777777777777777766           445


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  143 (167)
T 3v31_A           65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV  143 (167)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            66677777777777777777777777777755 56666777777777777777777777777777777777777777777


Q ss_pred             HccccCCcHHHHHHHHhhcCC
Q 014436          217 MYFDFKGDHHAMRQLFGRKKS  237 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~~~~  237 (424)
                      ..    ++.+++++|++....
T Consensus       144 ~~----~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          144 AL----GYRSVQQVIESHLLK  160 (167)
T ss_dssp             HH----TCHHHHHHHHHHHHH
T ss_pred             Hc----CcHHHHHHHHHHHHH
Confidence            77    777777777766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.2e-32  Score=245.42  Aligned_cols=294  Identities=14%  Similarity=0.049  Sum_probs=196.6

Q ss_pred             HHHHHHHH-cCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHH
Q 014436           27 PKLLKAAA-DGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAA  105 (424)
Q Consensus        27 ~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  105 (424)
                      ..+++|.. .++.+.++++++.|.       ++.||||+|  ++.|+.+++++|++.... ....+..+..|.||||+|+
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~A--a~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFVA--AITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHHH--HHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHHH--HHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHHH
Confidence            35777776 578999999998765       445999999  999999999999886221 1112234556789999999


Q ss_pred             HcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC-CCCCCCCcHHHHHH-
Q 014436          106 KFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY-SANDYGKTPLYMAA-  183 (424)
Q Consensus       106 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~-  183 (424)
                      ..|+.++|++|+++|++....      .++..+   .||||+|+..|+.+++++|+++|+++.. ..+..|.||||+|+ 
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~------~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMA------MIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHH------HHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHhCCCCcccc------ccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence            999999999999999642100      022233   8999999999999999999999998552 16677999999999 


Q ss_pred             hcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHH
Q 014436          184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND  263 (424)
Q Consensus       184 ~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  263 (424)
                      .+|+.++|++|+++|+       .|.|||++|+..    |+.+++++|++.++.. +..+    ++++.|+..|+.+++.
T Consensus       208 ~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~----g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          208 GRGHHNVINFLLDCPV-------MLAYAEIHEFEY----GEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             TTCCHHHHHHHTTSHH-------HHHHHHHCTTTT----TTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSS
T ss_pred             HCCCHHHHHHHHhCCC-------ccchHHHHHHHC----CCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhc
Confidence            9999999999999774       288999999999    9999999999987653 3332    4677788888766322


Q ss_pred             HHhhccccccccccCCCchHHHHHH---hcCCHHHHHHHHhhCCCc----cccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          264 LLEIDQTATNIADKDRKMTALHLAA---GRGHARTVETILSLAPEC----FELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       264 ~l~~~~~~~~~~~~~~~~t~l~~a~---~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                      ......          +...+...+   ..+..+.+++|++.+...    .......+.||||+|+..|+.+++++|++.
T Consensus       272 ~~~~~~----------~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~  341 (376)
T 2aja_A          272 KSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  341 (376)
T ss_dssp             HHHHHH----------HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHhhhh----------hHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence            110000          000011111   123456777777643210    011234567899999999999999999987


Q ss_pred             CccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          337 PFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       337 ~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                            ...++..|+|++.+|-..|..++.+.-++
T Consensus       342 ------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          342 ------PSVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             ------HHHHHSCC---------------------
T ss_pred             ------hHHHHHHHHhccccccccccccHHHHHHH
Confidence                  26677899999999999999998865444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=4.9e-30  Score=206.84  Aligned_cols=156  Identities=26%  Similarity=0.315  Sum_probs=104.9

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      .+.++|++|  ++.|+.+++++|++.    +..++..|..|.||||+|+..|+.+++++|+++|++           ++.
T Consensus        13 ~~~~~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~   75 (169)
T 2y1l_E           13 DLGKKLLEA--ARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----------VNA   75 (169)
T ss_dssp             CHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred             cccchHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCc
Confidence            455666666  666666666666664    455556666667777777777777777777776665           445


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+
T Consensus        76 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            56666777777777777777777777766654 55666777777777777777777777777777766777777777777


Q ss_pred             HccccCCcHHHHHHHHhh
Q 014436          217 MYFDFKGDHHAMRQLFGR  234 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~  234 (424)
                      ..    ++.+++++|++.
T Consensus       155 ~~----~~~~~~~~L~~~  168 (169)
T 2y1l_E          155 DN----GNEDLAEILQKL  168 (169)
T ss_dssp             HT----TCHHHHHHHHTC
T ss_pred             Hh----CCHHHHHHHHHc
Confidence            66    677777766654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=6.8e-29  Score=200.15  Aligned_cols=155  Identities=26%  Similarity=0.392  Sum_probs=88.3

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      .+.+||+.|+..|+.++|++|+++|++           ++..|..|.||||+|+..|+.+++++|+++|.+++ ..+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g   80 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGAD-----------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAG   80 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCC
Confidence            344555666666666666666655555           33445555566666665556666666655555544 445555


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY  255 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  255 (424)
                      .||||+|+..++.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.+ ++..+..|.||+++|+.
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF----GHLEIVEVLLKNGAD-VNAQDKFGKTAFDISID  155 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            5666666655556666666665555555555555666665555    555555555555544 35555555566666655


Q ss_pred             cCChhHHHHHhh
Q 014436          256 HGKYWINDLLEI  267 (424)
Q Consensus       256 ~~~~~~~~~l~~  267 (424)
                      .++.+++++|.+
T Consensus       156 ~~~~~~~~~L~~  167 (169)
T 2y1l_E          156 NGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHT
T ss_pred             hCCHHHHHHHHH
Confidence            555555555543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3e-28  Score=196.07  Aligned_cols=157  Identities=19%  Similarity=0.208  Sum_probs=136.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      .|.||||.|+..|+.+++++|++.+.+           ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-----------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-----------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCC
Confidence            578999999999999999999999877           66778899999999999999999999999988866 677889


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY  255 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  255 (424)
                      .||||+|+..++.+++++|+++|++++..+..|.||||+|+..    ++.+++++|++.+.. ++..+..|.||+++|+.
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG----NHVKCVKMLLESGAD-PTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998    999999999987766 46777778888888888


Q ss_pred             cCChhHHHHHhhcc
Q 014436          256 HGKYWINDLLEIDQ  269 (424)
Q Consensus       256 ~~~~~~~~~l~~~~  269 (424)
                      .|+.+++++|....
T Consensus       145 ~~~~~~~~~L~~~~  158 (167)
T 3v31_A          145 LGYRSVQQVIESHL  158 (167)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHH
Confidence            88777777766544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.8e-28  Score=196.44  Aligned_cols=157  Identities=22%  Similarity=0.183  Sum_probs=130.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      ...||||.|+..|+.+++++|+++|.+           ++..+..|.||||+|+. |+.+++++|+++|++++ ..+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g   70 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-----------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTG   70 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-----------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-----------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCC
Confidence            456899999999999999999998887           56678889999999988 99999999999998866 678889


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY  255 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  255 (424)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.++..++..+..|.|||++|+.
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~  146 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE----GHLRVVEFLVKHTASNVGHRNHKGDTACDLARL  146 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999998    899999999988877556666666666666666


Q ss_pred             cCChhHHHHHhhcc
Q 014436          256 HGKYWINDLLEIDQ  269 (424)
Q Consensus       256 ~~~~~~~~~l~~~~  269 (424)
                      .|+.+++++|.+.+
T Consensus       147 ~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          147 YGRNEVVSLMQANG  160 (162)
T ss_dssp             TTCHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHhC
Confidence            66666555555443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.9e-32  Score=229.72  Aligned_cols=198  Identities=17%  Similarity=0.029  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHh---hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHH
Q 014436           41 FKDMAREVIESL---LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLI  117 (424)
Q Consensus        41 v~~ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  117 (424)
                      ++.|++.|.++.   ..+..+.||||+|  +..|+.+++++|++.    +..++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDA--ALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHH--HHHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHH--HHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456777777654   2334566778888  888888888888775    5667777888888888888888888888888


Q ss_pred             HhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH--HhcCChHHHHHHH
Q 014436          118 DRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA--AESESSDMVLTLL  195 (424)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll  195 (424)
                      ++|++           ++..|..|.||||+|+..|+.+++++|++.|++++...+..|.||||+|  +..++.+++++|+
T Consensus        75 ~~ga~-----------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll  143 (229)
T 2vge_A           75 TAGAN-----------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA  143 (229)
T ss_dssp             HTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH
T ss_pred             HCCCC-----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH
Confidence            88877           5567778888888888888888888888888887644456788888888  7788888888888


Q ss_pred             HhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc-ccccCCCCChHHHHHHhcCChhHH
Q 014436          196 ENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL-LKVTDQYGWTPIHYAAYHGKYWIN  262 (424)
Q Consensus       196 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~  262 (424)
                      +.|++++..+..+.++++.++..    ..   .+.|+..+... ++.+|..|+||||+|+..|+.+++
T Consensus       144 ~~ga~~~~~~~~~~~~l~~~~~~----~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          144 DVEQSMGLMNSGAVYALWDYSAE----FG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             HHHHHTTTSGGGEEEESSCBCCS----ST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             HcCCCcccccCCchHHHHHHhhc----cc---cccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence            88888887777777777754433    21   13444444431 456677788888888877776633

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=220.67  Aligned_cols=203  Identities=18%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             HHHHhhcCCCCC--CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhh
Q 014436          157 VKILTREDPDYP--YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR  234 (424)
Q Consensus       157 v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~  234 (424)
                      ++.|++++.+..  ...+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..    ++.+++++|++.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~----g~~~~v~~Ll~~   76 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG----ANYSIVDFLITA   76 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHC
Confidence            356777776643  23345667788899999999999999999988888888899999999988    888899988888


Q ss_pred             cCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHH--HhcCCHHHHHHHHhhCCCccccccC
Q 014436          235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLA--AGRGHARTVETILSLAPECFELVDN  312 (424)
Q Consensus       235 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~v~~Ll~~~~~~~~~~~~  312 (424)
                      +.+ ++..|..|.||||+|+..|+.+++++|...+...+..+...|.||||+|  +..++.+++++|++.|+++ +.++.
T Consensus        77 ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~  154 (229)
T 2vge_A           77 GAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNS  154 (229)
T ss_dssp             TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGG
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccC
Confidence            765 4667777777777777777666666666666555555444667777777  6777777777777777665 55666


Q ss_pred             CCCcHHHHHHHcCCccchHHhhhCCccccc--cccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          313 RRWNFLHYAVASFQLQDLKPLLRNPFARIL--INEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       313 ~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~--i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      .|.|+++.++.....   +.|++.   |++  ++.+|..|+||||+|+..|+.++++.++.
T Consensus       155 ~~~~~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          155 GAVYALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             GEEEESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             CchHHHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            666666644333222   344444   444  66667777777777777777777765443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.8e-28  Score=193.18  Aligned_cols=121  Identities=23%  Similarity=0.314  Sum_probs=55.5

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      +..|.||||+|+..|+.+++++|+++|++           ++..+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   98 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDM   98 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCC
Confidence            33444444444444444444444444443           23334444444444444444444444444444433 3344


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ  230 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  230 (424)
                      .|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..    ++.+++++
T Consensus        99 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~~  151 (153)
T 1awc_B           99 LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN----GNEDLAEI  151 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc----CCHHHHHH
Confidence            444444444444444444444444444444444444444444444    44444443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.7e-28  Score=197.87  Aligned_cols=161  Identities=22%  Similarity=0.232  Sum_probs=124.1

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      .+.++||.|  +..|+.+++++|++.   .+..++..+..|.||||+|+..|+.+++++|+++|++           ++.
T Consensus         4 ~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~   67 (179)
T 3f6q_A            4 EFMDDIFTQ--CREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-----------INV   67 (179)
T ss_dssp             ---CCHHHH--HHHTCHHHHHHHHHC---TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------TTC
T ss_pred             HHHHHHHHH--HHcCCHHHHHHHHhc---CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----------CCC
Confidence            466778888  888888888777664   3555677777888888888888888888888888777           556


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      .+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  146 (179)
T 3f6q_A           68 MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK  146 (179)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH
Confidence            67778888888888888888888888887765 66777888888888888888888888888888888888888888887


Q ss_pred             HccccCCcHHHHHHHHhhcCCc
Q 014436          217 MYFDFKGDHHAMRQLFGRKKSL  238 (424)
Q Consensus       217 ~~~~~~~~~~~~~~Ll~~~~~~  238 (424)
                      ..    ++.+++++|++.+...
T Consensus       147 ~~----~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          147 AP----LRELLRERAEKMGQNL  164 (179)
T ss_dssp             HH----HHHHHHHHHHHTTCCC
T ss_pred             HH----HHHHHHHHHHHhhcCc
Confidence            77    7778888888777663

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.2e-28  Score=198.00  Aligned_cols=159  Identities=20%  Similarity=0.249  Sum_probs=106.9

Q ss_pred             cccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHH
Q 014436           55 LQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI  134 (424)
Q Consensus        55 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i  134 (424)
                      +..|.|+||.|  ++.|+.+++++|++.   .+...+..+..|.||||+|+..|+.+++++|+++|++           +
T Consensus         5 ~~~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~   68 (165)
T 3twr_A            5 NSEADRQLLEA--AKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-----------V   68 (165)
T ss_dssp             -CHHHHHHHHH--HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------T
T ss_pred             cchhhHHHHHH--HHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-----------C
Confidence            34566677777  777777766666553   2344455566667777777777777777777777766           4


Q ss_pred             HHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 014436          135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA  214 (424)
Q Consensus       135 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~  214 (424)
                      +..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  147 (165)
T 3twr_A           69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL  147 (165)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred             CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence            4566667777777777777777777777777655 556667777777777777777777777777777777777777777


Q ss_pred             HHHccccCCcHHHHHHHHhhc
Q 014436          215 AVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       215 a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      |+.     ++.+++++|++.+
T Consensus       148 a~~-----~~~~i~~~L~~~g  163 (165)
T 3twr_A          148 VKD-----GDTDIQDLLRGDA  163 (165)
T ss_dssp             SCT-----TCHHHHHHHHTC-
T ss_pred             Hhc-----CChHHHHHHhhcc
Confidence            543     5667777776554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-27  Score=189.38  Aligned_cols=151  Identities=21%  Similarity=0.239  Sum_probs=136.9

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      ..||||.|+..|+.+++++|+++|.+..            .+..|.||||+|+..|+.+++++|++.|++++ ..+..|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~   68 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCC
Confidence            3589999999999999999999998632            46789999999999999999999999999876 7788899


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  256 (424)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.+.. ++.++..|.||+++|+..
T Consensus        69 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B           69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999999999999998    999999999998776 578888999999999999


Q ss_pred             CChhHHHHH
Q 014436          257 GKYWINDLL  265 (424)
Q Consensus       257 ~~~~~~~~l  265 (424)
                      |+.+++++|
T Consensus       144 ~~~~i~~~L  152 (153)
T 1awc_B          144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            988888776

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.8e-29  Score=203.10  Aligned_cols=167  Identities=23%  Similarity=0.241  Sum_probs=151.3

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHH-HHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREV-IESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      .+.++|+.||..|+.++|++|++.+ .+.+..+..|.||||+|  +..|+.+++++|++.    +..++..|..|.||||
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   77 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIMR----GARINVMNRGDDTPLH   77 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCCHHH
Confidence            3456799999999999999999974 44557888999999999  999999999999986    7888889999999999


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA  182 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  182 (424)
                      +|+..|+.+++++|+++|++           ++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A  145 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKAD-----------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKA  145 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGS
T ss_pred             HHHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHH
Confidence            99999999999999999998           66788999999999999999999999999999976 7889999999999


Q ss_pred             HhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436          183 AESESSDMVLTLLENCTSLSHEGPNG  208 (424)
Q Consensus       183 ~~~~~~~~v~~Ll~~~~~~~~~~~~~  208 (424)
                      +..++.+++++|+++|++++..+..+
T Consensus       146 ~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          146 KAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHHHHHHHHHhhcCcccCCccc
Confidence            99999999999999999998766543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=8.8e-28  Score=191.03  Aligned_cols=150  Identities=25%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhc-hhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRA-KLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      .||||.|+..|+.+++++|++.. .+           ++..+..|.||||+ +..|+.+++++|++.|++++ ..+..|.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~   69 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVH-----------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCC-----------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcC-----------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCC
Confidence            35555555555555555555551 12           33444555555555 55555555555555555543 4445555


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  256 (424)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++. . .++..+..|.|||++|+..
T Consensus        70 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~~  143 (156)
T 1bd8_A           70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE----GHTAVVSFLAAE-S-DLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH----TCHHHHHHHHTT-S-CTTCCCTTSCCHHHHHHHS
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh----ChHHHHHHHHhc-c-CCCCcCCCCCCHHHHHHHc
Confidence            555555555555555555555555555555555555555555    555555555555 2 2345555555555555555


Q ss_pred             CChhHHHHHh
Q 014436          257 GKYWINDLLE  266 (424)
Q Consensus       257 ~~~~~~~~l~  266 (424)
                      |+.+++++|.
T Consensus       144 ~~~~~v~~Ll  153 (156)
T 1bd8_A          144 GAQDLVDILQ  153 (156)
T ss_dssp             CCHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            5555555443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=7.1e-27  Score=185.77  Aligned_cols=154  Identities=25%  Similarity=0.336  Sum_probs=131.0

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD  220 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~  220 (424)
                      +.||||.|+..|+.+++++|++.........+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..  
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART--   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--
Confidence            35889999999999999999988322234678889999999 889999999999999999999999999999999998  


Q ss_pred             cCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436          221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL  300 (424)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  300 (424)
                        ++.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|... ...+..+. .|.||||+|+..|+.+++++|+
T Consensus        79 --~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           79 --GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             --TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHH
T ss_pred             --CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-CCCCHHHHHHHcCcHHHHHHHH
Confidence              999999999988866 578888999999999999999988888777 55555554 8889999999999999999998


Q ss_pred             hh
Q 014436          301 SL  302 (424)
Q Consensus       301 ~~  302 (424)
                      ++
T Consensus       154 ~~  155 (156)
T 1bd8_A          154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.5e-27  Score=190.28  Aligned_cols=160  Identities=24%  Similarity=0.238  Sum_probs=133.4

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      .|..|.||||.|+..|+.+++++|++.+...          ++..+..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   72 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN----------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKD   72 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT----------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC----------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccC
Confidence            3566789999999999999999999865432          34566778899999999999999999999998866 777


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY  252 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  252 (424)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++.+.. ++.++..|.||+++
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~  147 (165)
T 3twr_A           73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK----GKYEICKLLLQHGAD-PTKKNRDGNTPLDL  147 (165)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCTGGG
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHcCCC-CcccCCCCCChhHh
Confidence            8899999999999999999999999999999999999999999998    899999999988766 57888888888888


Q ss_pred             HHhcCChhHHHHHhhcc
Q 014436          253 AAYHGKYWINDLLEIDQ  269 (424)
Q Consensus       253 a~~~~~~~~~~~l~~~~  269 (424)
                      |+. ++.+++++|...+
T Consensus       148 a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          148 VKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             SCT-TCHHHHHHHHTC-
T ss_pred             Hhc-CChHHHHHHhhcc
Confidence            666 6677777776544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=9e-29  Score=211.12  Aligned_cols=163  Identities=15%  Similarity=0.036  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHV  103 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  103 (424)
                      .+.|+|+.|+..|+.+.++.|++.|.+.... ..|.||||+|  +..|+.+++++|++.    +..++.+|..|.||||+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             ----------------------------------CHHHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHH
Confidence            4567788888888888888888877766554 3677778887  777777777777764    55667777777788888


Q ss_pred             HHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH-
Q 014436          104 AAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA-  182 (424)
Q Consensus       104 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-  182 (424)
                      |+..|+.+++++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|++++...+..+.||||+| 
T Consensus        77 A~~~g~~~~v~~Ll~~ga~-----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVN-----------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHH
Confidence            8887888888888877776           5566777778888887777778888887777776633333333787777 


Q ss_pred             -HhcCChHHHHHHHHhCCCCCCC
Q 014436          183 -AESESSDMVLTLLENCTSLSHE  204 (424)
Q Consensus       183 -~~~~~~~~v~~Ll~~~~~~~~~  204 (424)
                       +..|+.+++++|+++|++++..
T Consensus       146 ~~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          146 EMEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             SSSTTCCCHHHHHHHHHHHTTTT
T ss_pred             HhhhccHHHHHHHHHhhhccccc
Confidence             6667777787777777666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.6e-27  Score=203.35  Aligned_cols=212  Identities=13%  Similarity=0.059  Sum_probs=122.2

Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436          138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM  217 (424)
Q Consensus       138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~  217 (424)
                      +..|.||||.|+..+..+.++.|+++|.++..  +..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34577888888888888888888888777652  3557788888888888888888888888777777778888888877


Q ss_pred             ccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436          218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE  297 (424)
Q Consensus       218 ~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~  297 (424)
                      .    ++.+++++|++.+.+ ++..|.                                  .|.||||+|+..|+.++++
T Consensus        80 ~----g~~~~v~~Ll~~ga~-~~~~d~----------------------------------~g~tpL~~A~~~~~~~~v~  120 (239)
T 1ycs_B           80 A----GHTEIVKFLVQFGVN-VNAADS----------------------------------DGWTPLHCAASCNNVQVCK  120 (239)
T ss_dssp             H----TCHHHHHHHHHHTCC-TTCCCT----------------------------------TCCCHHHHHHHTTCHHHHH
T ss_pred             c----CCHHHHHHHHHcCCC-CCccCC----------------------------------CCCCHHHHHHHcCCHHHHH
Confidence            7    777777777776554 244333                                  5566666666677777777


Q ss_pred             HHHhhCCCccccccCCCC-cHHHHH--HHcCCccchHHhhhCCccccccccc---------cCCCCcHHHHHHhcCCcch
Q 014436          298 TILSLAPECFELVDNRRW-NFLHYA--VASFQLQDLKPLLRNPFARILINEG---------DAKGNTPLHVFAAVRPSEF  365 (424)
Q Consensus       298 ~Ll~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~ll~~~~~~~~i~~~---------d~~g~t~L~~A~~~~~~~~  365 (424)
                      +|++.|+++ +.++..|. ||+|+|  +..++.+++++|++.   +++++..         +..|.++++++...|.  +
T Consensus       121 ~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~  194 (239)
T 1ycs_B          121 FLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--C  194 (239)
T ss_dssp             HHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--E
T ss_pred             HHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHh---hhcccccccceEEEEeccCCCCCCcccccCCC--E
Confidence            777777776 55555554 777777  667777777777776   5555554         6678888888877665  4


Q ss_pred             hhhhccccchh------hhhhcCCCCchhhHHhhcCchh
Q 014436          366 NRYMSRTTHAN------YQAVNDQNVSVGHIMKYGYPEL  398 (424)
Q Consensus       366 ~~~LL~~~g~~------~~~~~~~g~t~l~~a~~~~~~~  398 (424)
                      ++.+.. .+.+      ....++.|.+|..|+.. +++.
T Consensus       195 i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~-~~~~  231 (239)
T 1ycs_B          195 MTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGL-YPRI  231 (239)
T ss_dssp             EEECCC-CTTSCSSEEEEEETTEEEEEEGGGEEC-CC--
T ss_pred             EEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeE-CCcC
Confidence            433333 4443      23567788999999753 4443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2.9e-26  Score=177.53  Aligned_cols=133  Identities=19%  Similarity=0.185  Sum_probs=123.0

Q ss_pred             chhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCC
Q 014436           87 PALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD  166 (424)
Q Consensus        87 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  166 (424)
                      +..++..+..|.||||+|+..|+.+++++|+++|++           ++.+|..|.||||+|+. ++.+++++|+++|++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~   69 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE   69 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC
Confidence            345677899999999999999999999999999988           66778899999999999 999999999999999


Q ss_pred             CCCCCCCC-CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          167 YPYSANDY-GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       167 ~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      ++ ..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++.++
T Consensus        70 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATG  135 (136)
T ss_dssp             SS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH----TCHHHHHHHHHHHC
T ss_pred             CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHcCC
Confidence            76 67777 99999999999999999999999999999999999999999999    99999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=9e-26  Score=179.17  Aligned_cols=146  Identities=17%  Similarity=0.116  Sum_probs=114.8

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY  169 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  169 (424)
                      .+..+..|.||||+|+..|+.++|++|+++|++           ++..+..|.||||+|+ .|+.+++++|+++|++++ 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-   71 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGAN-----------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-   71 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-----------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-
Confidence            345678899999999999999999999999987           6677889999999985 899999999999999876 


Q ss_pred             CCCCCCCc-HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCCh
Q 014436          170 SANDYGKT-PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWT  248 (424)
Q Consensus       170 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t  248 (424)
                      ..+..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+..    ++.+++++|++.++. ++..+..|.|
T Consensus        72 ~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~~~v~~Ll~~ga~-~~~~~~~g~t  146 (156)
T 1bi7_B           72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGG-TRGSNHARID  146 (156)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHSSCC-------------
T ss_pred             CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh----CHHHHHHHHHHcCCC-CCccCcCcCc
Confidence            77888998 99999999999999999999999999999999999999999    999999999998877 5788888888


Q ss_pred             HHHHH
Q 014436          249 PIHYA  253 (424)
Q Consensus       249 ~l~~a  253 (424)
                      |.+.+
T Consensus       147 ~~~~~  151 (156)
T 1bi7_B          147 AAEGP  151 (156)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            87643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3.1e-27  Score=192.28  Aligned_cols=159  Identities=11%  Similarity=0.116  Sum_probs=134.3

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhh----ccHHHHHHHHHhCchhhhhhccCCCcHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAEN----ASTKFVEEILEICPALLIQVNAKGDTPLH  102 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  102 (424)
                      ++|+.||+.|+++.++.+++.+++. ..+..|.||||+|  +.+++.    +++++|++.    +++++.+|..|+||||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLINK----GADIKSRTKEGTTLFF   80 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCCTHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCcHHH
Confidence            4599999999999999999877542 2336799999999  888864    588888875    8899999999999999


Q ss_pred             HHHHcCc------HHHHHHHHHhchhcccchHHHHHHHHHhcCCCC-cHHHHHHhCC-----CHHHHHHHhh-cCCCCCC
Q 014436          103 VAAKFGH------SDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKN-TALHDAMFPG-----NMEVVKILTR-EDPDYPY  169 (424)
Q Consensus       103 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~~~~~  169 (424)
                      +|+..|+      .+++++|+++|++           ++.+|..|. ||||+|+..+     ..+++++|++ .|++++ 
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gad-----------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-  148 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGAD-----------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-  148 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCC-----------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCC-----------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-
Confidence            9999886      6889999999998           678889999 9999999854     3568899999 899876 


Q ss_pred             CCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCC
Q 014436          170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHE  204 (424)
Q Consensus       170 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  204 (424)
                      ..|..|.||||+|+..++.++|++|.++..+.+.+
T Consensus       149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            78888999999999999999999998876544443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=3.8e-26  Score=176.87  Aligned_cols=129  Identities=16%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHH
Q 014436           53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ  132 (424)
Q Consensus        53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  132 (424)
                      ..+..|.||||+|  +..|+.+++++|++.    +..++.+|..|.||||+|+. |+.+++++|+++|++          
T Consensus         7 ~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~----------   69 (136)
T 1d9s_A            7 MLGGSSDAGLATA--AARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE----------   69 (136)
T ss_dssp             CCCCCCSCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred             CCCCCCccHHHHH--HHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence            5566788888888  888888888888875    66777788888888888888 888888888888887          


Q ss_pred             HHHHhcCC-CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          133 MIRMVNNK-KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       133 ~i~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                       ++.+|.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|+|
T Consensus        70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           70 -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             5567777 8888888888888888888888888866 6777888888888888888888888888865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=2.4e-25  Score=181.17  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=133.5

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCH----HHHHHHhhcCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNM----EVVKILTREDPDYPYSAN  172 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~  172 (424)
                      ++++|+.|++.|+.+.++.++..+.+.            ..+..|+||||+|+.+++.    +++++|+++|++++ .++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~------------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d   72 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED------------KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRT   72 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC------------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc------------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCC
Confidence            568899999999999999999887542            1236799999999999975    59999999999987 778


Q ss_pred             CCCCcHHHHHHhcCC------hHHHHHHHHhCCCCCCCCCCCC-cHHHHHHHcccc-CCcHHHHHHHHh-hcCCcccccC
Q 014436          173 DYGKTPLYMAAESES------SDMVLTLLENCTSLSHEGPNGK-TALHAAVMYFDF-KGDHHAMRQLFG-RKKSLLKVTD  243 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~-t~L~~a~~~~~~-~~~~~~~~~Ll~-~~~~~~~~~~  243 (424)
                      ..|+||||+|+..++      .+++++|+++|++++.+|..|. ||||+|+..... .+..++++.|+. .+++ ++.+|
T Consensus        73 ~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d  151 (186)
T 3t8k_A           73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKD  151 (186)
T ss_dssp             TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCC
T ss_pred             CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccC
Confidence            999999999999887      5789999999999999999999 999999984110 134568889998 6665 68899


Q ss_pred             CCCChHHHHHHhcCChhHHHHHhhccc
Q 014436          244 QYGWTPIHYAAYHGKYWINDLLEIDQT  270 (424)
Q Consensus       244 ~~~~t~l~~a~~~~~~~~~~~l~~~~~  270 (424)
                      ..|.||||+|+..|+.+++++|.....
T Consensus       152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          152 KWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             TTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999998888887765443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.9e-24  Score=162.75  Aligned_cols=125  Identities=32%  Similarity=0.502  Sum_probs=116.8

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      +|.||||.|+..|+.+++++|+++|.+           ++..+..|.||||+|+..++.+++++|++.|.++. ..+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g   68 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNG   68 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-----------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCC
Confidence            489999999999999999999999987           56678899999999999999999999999999876 778889


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      .||||+|+..++.+++++|+++|++++.++..|.|||++|+..    ++.+++++|++.++
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN----GHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHTC
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CcHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999    99999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=3.8e-25  Score=175.52  Aligned_cols=145  Identities=17%  Similarity=0.125  Sum_probs=110.7

Q ss_pred             cccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCc-HH
Q 014436          240 KVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWN-FL  318 (424)
Q Consensus       240 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~l  318 (424)
                      ...+..|.||||+|+..|+.+++++|...+...+..+. .|.||||+|+ .++.+++++|++.|+++ +.++..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence            34566778888888888888877777777666565555 8889999985 89999999999999986 889999999 99


Q ss_pred             HHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHH
Q 014436          319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIM  391 (424)
Q Consensus       319 ~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a  391 (424)
                      |+|+..++.+++++|++.   |++++.+|..|+||||+|+..++.+++++|++ +|++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            999999999999999998   89999999999999999999999999999988 8999999999999998754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.3e-24  Score=166.77  Aligned_cols=127  Identities=24%  Similarity=0.277  Sum_probs=113.5

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      ....+.||||+|+..|+.+++++|+++|++           ++..|..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d   77 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-----------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVD   77 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCC
Confidence            345678999999999999999999999988           66778899999999999999999999999999876 678


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++.+
T Consensus        78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN----GNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC----CCHHHHHHHHHcC
Confidence            8899999999999999999999999999999999999999999998    9999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=2.5e-24  Score=164.40  Aligned_cols=126  Identities=30%  Similarity=0.434  Sum_probs=115.3

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      +|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++           ++.
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~   63 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNA   63 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------TTC
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----------Ccc
Confidence            488999999  999999999999986    667788889999999999999999999999999988           567


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                      +|..|.||||+|+..++.+++++|+++|+++. ..+..|.|||++|+..++.+++++|+++|++
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            78899999999999999999999999999876 7788899999999999999999999999975

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.8e-24  Score=167.42  Aligned_cols=127  Identities=22%  Similarity=0.296  Sum_probs=104.7

Q ss_pred             ccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH
Q 014436           54 TLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM  133 (424)
Q Consensus        54 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  133 (424)
                      ....+.||||+|  +..|+.+++++|++.    +..++..|..|.||||+|+..|+.+++++|+++|++           
T Consensus        10 ~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   72 (136)
T 2jab_A           10 HGSDLGKKLLEA--ARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----------   72 (136)
T ss_dssp             --CHHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             ccccccHHHHHH--HHhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            344677888888  888888888888875    666777888888888888888888888888888887           


Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC  198 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  198 (424)
                      ++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..++.+++++|+++|
T Consensus        73 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            56677888889999888888889998888888865 67788889999998888888888888765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=1.9e-24  Score=167.59  Aligned_cols=128  Identities=21%  Similarity=0.179  Sum_probs=110.0

Q ss_pred             hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      .+|..|.||||+|+..|+.+++++|+++|++           ++..|..|.||||+|+..|+.+++++|+++|.+++ ..
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~   72 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TT   72 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-Cc
Confidence            4678899999999999999999999999887           55678889999999999999999999999999866 77


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..    +..+++.++....
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~----~~~~~l~~l~~~~  132 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE----SMKSLLLLPEKNE  132 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH----HHHHHHSCC----
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc----cHHHHHhhccccc
Confidence            88899999999999999999999999999999999999999999876    6666666555433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=5.6e-24  Score=173.55  Aligned_cols=141  Identities=23%  Similarity=0.209  Sum_probs=122.2

Q ss_pred             hccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           93 VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        93 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      .+..|.||||.|+..|+.++++.|++ |.+           ++.+|..|.||||+|+..|+.+++++|+++|++++...+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  107 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD-----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM  107 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence            45678899999999999999999999 776           667889999999999999999999999999999875544


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHY  252 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~  252 (424)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..    ++.                  ..+.+++++
T Consensus       108 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~----~~~------------------~~~~~~l~~  165 (183)
T 3deo_A          108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI----LKT------------------TPKGNPMQF  165 (183)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH----HHT------------------CCCCSHHHH
T ss_pred             CCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh----ccC------------------cccccHHHH
Confidence            8899999999999999999999999999999999999999999875    211                  245678888


Q ss_pred             HHhcCChhHHHHHhh
Q 014436          253 AAYHGKYWINDLLEI  267 (424)
Q Consensus       253 a~~~~~~~~~~~l~~  267 (424)
                      ++..|..+++++|..
T Consensus       166 a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          166 GRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHcCHHHHHHHHHH
Confidence            888887777777754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.1e-23  Score=179.96  Aligned_cols=141  Identities=23%  Similarity=0.191  Sum_probs=111.6

Q ss_pred             cCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHH
Q 014436           57 TRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRM  136 (424)
Q Consensus        57 ~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~  136 (424)
                      .+.+++..+  +..|+.+.+..+...       ....+..|.||||.|+..|+.+++++|++ |++           ++.
T Consensus        14 ~~~~~~l~~--~~~g~~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----------~~~   72 (244)
T 3ui2_A           14 EGAMEYLIE--WKDGHSPSWVPSSYI-------AADVVSEYETPWWTAARKADEQALSQLLE-DRD-----------VDA   72 (244)
T ss_dssp             TTEEEEEEE--ESSCCCCEEEEGGGS-------CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-----------TTC
T ss_pred             CCccHHHHH--HHcCCCccccccccc-------ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-----------CCC
Confidence            455566666  666666654332211       12345578899999999999999999998 776           667


Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      +|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        73 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            78889999999999999999999999999877444478999999999999999999999999999999999999999988


Q ss_pred             Hc
Q 014436          217 MY  218 (424)
Q Consensus       217 ~~  218 (424)
                      ..
T Consensus       153 ~~  154 (244)
T 3ui2_A          153 EI  154 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2.7e-23  Score=157.75  Aligned_cols=112  Identities=23%  Similarity=0.246  Sum_probs=101.2

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCC
Q 014436           94 NAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        94 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      +..|.||||.|+..|+.+++++|++.|.+           ++..|..|.||||+|+..|+.+++++|++.|++++ ..+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~   71 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDK   71 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-----------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCC
Confidence            55788999999999999999999999987           66778899999999999999999999999999976 7788


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM  217 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~  217 (424)
                      .|.||||+|+..++.+++++|+++|++++.+|..|.|||++|..
T Consensus        72 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           72 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            89999999999999999999999999999999999999999854

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=2.6e-24  Score=166.80  Aligned_cols=133  Identities=23%  Similarity=0.357  Sum_probs=114.2

Q ss_pred             HHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccch
Q 014436           48 VIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGD  127 (424)
Q Consensus        48 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  127 (424)
                      |+++ .++..|.||||+|  +..|+.+++++|++.    +..++.+|..|.||||+|+..|+.+++++|+++|++     
T Consensus         1 G~d~-~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----   68 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIA--SIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-----   68 (137)
T ss_dssp             ---C-CCCTTCCCHHHHH--HHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             CCCC-CcCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----
Confidence            4455 6778999999999  999999999999986    777888899999999999999999999999999988     


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC
Q 014436          128 EAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT  199 (424)
Q Consensus       128 ~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  199 (424)
                            ++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|+..+..+++++|.+.+.
T Consensus        69 ------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           69 ------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             ------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             ------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence                  66778899999999999999999999999999976 788899999999999888888887776653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=5e-23  Score=173.57  Aligned_cols=133  Identities=23%  Similarity=0.226  Sum_probs=116.2

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhc-CCCCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE-DPDYP  168 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  168 (424)
                      ++..+..|.||||+|+..|+.+++++|++.|++           ++.+|..|.||||+|+..|+.+++++|++. |.+++
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  134 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-----------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN  134 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCC-----------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence            345688899999999999999999999999988           667889999999999999999999999999 88866


Q ss_pred             CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc
Q 014436          169 YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL  238 (424)
Q Consensus       169 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~  238 (424)
                       ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..    +..++++.++..+...
T Consensus       135 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~----~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          135 -QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA----ACASLLKKKQGTDAVR  199 (222)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH----HHHHHHC---------
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch----hHHHHHHHHhccchhh
Confidence             7889999999999999999999999999999999999999999999998    9999999999877653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=9.6e-23  Score=154.68  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=103.8

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHH
Q 014436          279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA  358 (424)
Q Consensus       279 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~  358 (424)
                      .|.||||.|+..|+.+++++|++.|+++ +.++..|+||||+|+..++.+++++|++.   |++++.+|..|+||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHHH
Confidence            6789999999999999999999999986 88999999999999999999999999998   8999999999999999999


Q ss_pred             hcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          359 AVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       359 ~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      ..++.+++++|++ +|++++.+|..|+||+++|.
T Consensus        82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            9999999999998 79999999999999999994

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=3e-22  Score=163.26  Aligned_cols=141  Identities=23%  Similarity=0.252  Sum_probs=126.9

Q ss_pred             hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHH
Q 014436          137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAA  215 (424)
Q Consensus       137 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a  215 (424)
                      .+..|.||||+|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            45678899999999999999999999 88866 788899999999999999999999999999999888 8999999999


Q ss_pred             HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHH
Q 014436          216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  295 (424)
                      +..    ++.+++++|++.+.. ++.+|..|.||||+|+..++.                  ..+.++|++|+..|..++
T Consensus       118 ~~~----~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i  174 (183)
T 3deo_A          118 AGY----VRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKV  174 (183)
T ss_dssp             HHT----TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHH
T ss_pred             Hhc----CcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHH
Confidence            999    999999999999877 588999999999999875421                  255689999999999999


Q ss_pred             HHHHHhh
Q 014436          296 VETILSL  302 (424)
Q Consensus       296 v~~Ll~~  302 (424)
                      +++|.++
T Consensus       175 ~~~L~~~  181 (183)
T 3deo_A          175 INVLEGQ  181 (183)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=4.2e-22  Score=170.12  Aligned_cols=170  Identities=23%  Similarity=0.204  Sum_probs=140.5

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      +.+++..++..|+.+.+..+...+.              ..+..|.||||+|+..|+.+++++|++ +.+++ ..+..|.
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~--------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~   78 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAA--------------DVVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGR   78 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCH--------------HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSC
T ss_pred             CccHHHHHHHcCCCccccccccccc--------------ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCC
Confidence            3444555555555544444333332              234578899999999999999999999 88866 7888999


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCC-CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHh
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEG-PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAY  255 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~  255 (424)
                      ||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..    ++.+++++|++.++. ++..+..|.||||+|+.
T Consensus        79 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY----VRPEVVEALVELGAD-IEVEDERGLTALELARE  153 (244)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999888 8899999999999    999999999999877 58899999999999986


Q ss_pred             cCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCC
Q 014436          256 HGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE  305 (424)
Q Consensus       256 ~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~  305 (424)
                      .+..                  ..+.+||++|+..|+.+++++|++.+.+
T Consensus       154 ~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          154 ILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHTT------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHhc------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            4321                  2667999999999999999999987543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=176.63  Aligned_cols=145  Identities=16%  Similarity=0.020  Sum_probs=121.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC---CCHHHHHHHhhcCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP---GNMEVVKILTREDPDYPYSAND  173 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~  173 (424)
                      ..++|+.|+..|+.+.++.|++.|+++.....     ....+..|.||||+|+..   ++.+++++|+++|++++ ..+.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAA  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE-----CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCC-----CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCC
Confidence            45789999999999999999999988431100     000578999999999987   89999999999999977 7788


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA  253 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a  253 (424)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..    ++.+++++|++.++.       .|.||||+|
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~----~~~~iv~~Ll~~ga~-------~g~tpLh~A  293 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAG-------TFAFPLHVD  293 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH----TCHHHHHHHHHHHHH-------TTSSCCC--
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCC-------CCCChhHHH
Confidence            999999999999999999999999999999999999999999999    999999999998754       478999999


Q ss_pred             HhcCC
Q 014436          254 AYHGK  258 (424)
Q Consensus       254 ~~~~~  258 (424)
                      +..|+
T Consensus       294 ~~~g~  298 (301)
T 2b0o_E          294 YSWVI  298 (301)
T ss_dssp             -----
T ss_pred             HhcCC
Confidence            98875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.5e-23  Score=184.23  Aligned_cols=139  Identities=19%  Similarity=0.135  Sum_probs=115.9

Q ss_pred             ccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhh------hccCCCcHHHHHHHc---CcHHHHHHHHHhchhcccc
Q 014436           56 QTRNTILHINIMCQDAENASTKFVEEILEICPALLIQ------VNAKGDTPLHVAAKF---GHSDIVRVLIDRAKLAQDG  126 (424)
Q Consensus        56 ~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~  126 (424)
                      ....++|+.|  +..|+.+.++.|++.    +..++.      .+..|.||||+|+..   |+.+++++|+++|++    
T Consensus       149 ~~~~~~L~~A--~~~g~~~~v~~ll~~----g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad----  218 (301)
T 2b0o_E          149 TPEPQRLWTA--ICNRDLLSVLEAFAN----GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH----  218 (301)
T ss_dssp             C-CHHHHHHH--HHTTCHHHHHHHHHT----TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC----
T ss_pred             CchHHHHhhh--hhccCHHHHHHHHhc----CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC----
Confidence            3466789999  889998888888764    556665      688899999999987   889999999999988    


Q ss_pred             hHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCC
Q 014436          127 DEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP  206 (424)
Q Consensus       127 ~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  206 (424)
                             ++.+|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..++.+++++|+++|++      
T Consensus       219 -------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------  284 (301)
T 2b0o_E          219 -------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------  284 (301)
T ss_dssp             -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred             -------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence                   66788899999999999999999999999999976 7888899999999999999999999999976      


Q ss_pred             CCCcHHHHHHHc
Q 014436          207 NGKTALHAAVMY  218 (424)
Q Consensus       207 ~~~t~L~~a~~~  218 (424)
                      .|.||||+|+.+
T Consensus       285 ~g~tpLh~A~~~  296 (301)
T 2b0o_E          285 TFAFPLHVDYSW  296 (301)
T ss_dssp             TTSSCCC-----
T ss_pred             CCCChhHHHHhc
Confidence            478999999887

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=7.2e-23  Score=172.62  Aligned_cols=138  Identities=18%  Similarity=0.172  Sum_probs=113.7

Q ss_pred             hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHh-chhcccchHHHH
Q 014436           53 LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQDGDEAAR  131 (424)
Q Consensus        53 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~  131 (424)
                      ..+..|.||||+|  +..|+.+++++|++.    +..++.+|..|.||||+|+..|+.++|++|++. |++         
T Consensus        68 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---------  132 (222)
T 3ehr_A           68 EQAESIDNPLHEA--AKRGNLSWLRECLDN----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---------  132 (222)
T ss_dssp             HHEEEESCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---------
T ss_pred             ccccccccccccc--cccCcHHHHHHHHhC----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---------
Confidence            4556899999999  999999999999985    777888999999999999999999999999998 887         


Q ss_pred             HHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCC
Q 014436          132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG  208 (424)
Q Consensus       132 ~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  208 (424)
                        ++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|+..+..++++.|++.++.....+..+
T Consensus       133 --~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          133 --LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             --CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             --ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence              66788999999999999999999999999999976 788899999999999999999999999998877655443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=3.6e-21  Score=137.97  Aligned_cols=93  Identities=34%  Similarity=0.529  Sum_probs=74.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      +|+||||+|+..|+.+++++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g   68 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNG   68 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCC
Confidence            377888888888888888888888877           56677788888888888888888888888888865 677778


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCC
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTS  200 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~  200 (424)
                      .||||+|+..|+.+++++|+++|++
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           69 RTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888888888764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=7.4e-21  Score=165.18  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             ChHHHHHHhcCChhHHHHHhhcccccccc-----ccCCCchHHHHHHhc---CCHHHHHHHHhhCCCccccccCCCCcHH
Q 014436          247 WTPIHYAAYHGKYWINDLLEIDQTATNIA-----DKDRKMTALHLAAGR---GHARTVETILSLAPECFELVDNRRWNFL  318 (424)
Q Consensus       247 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~t~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  318 (424)
                      .++|+.|+..++.+.+..+...+......     ....|.||||+|+..   ++.+++++|++.|+++ +.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            35666777777666444443333332211     123677788888777   7778888888887775 66777788888


Q ss_pred             HHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccch
Q 014436          319 HYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA  375 (424)
Q Consensus       319 ~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~  375 (424)
                      |+|+..|+.+++++|++.   |++++.+|..|+||||+|+..|+.+++++|++ +|+
T Consensus       210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQ-ALS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHT
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence            888888888888888876   77788888888888888888888887777766 554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=3.6e-20  Score=160.85  Aligned_cols=132  Identities=19%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhhCCCcc-----ccccCCCCcHHHHHHHc---CCccchHHhhhCCccccccccccCCCC
Q 014436          280 KMTALHLAAGRGHARTVETILSLAPECF-----ELVDNRRWNFLHYAVAS---FQLQDLKPLLRNPFARILINEGDAKGN  351 (424)
Q Consensus       280 ~~t~l~~a~~~~~~~~v~~Ll~~~~~~~-----~~~~~~g~t~l~~A~~~---~~~~~~~~ll~~~~~~~~i~~~d~~g~  351 (424)
                      ..++|+.|+..++.+.++.+++.|.++.     +..+..|+||||+|+..   ++.+++++|++.   |++++.+|..|+
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~  206 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCC
Confidence            3578999999999999999999999852     44488899999999999   899999999998   999999999999


Q ss_pred             cHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHHHhhhhhhhhhHh
Q 014436          352 TPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHY  417 (424)
Q Consensus       352 t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (424)
                      ||||+|+..|+.+++++||+ +|++++.+|..|+||||+|+.. ++..+++ .+++....++..|.
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~-~~~~~v~-~Ll~~ga~~~~~~~  269 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRL-KHEHCEE-LLTQALSGRFNSHV  269 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT-TCHHHHH-HHHHHHTTCCCSSC
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHc-CCHHHHH-HHHHcCCCCCCcce
Confidence            99999999999999999998 8999999999999999999864 7777776 33444444444443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.1e-20  Score=167.75  Aligned_cols=143  Identities=15%  Similarity=0.106  Sum_probs=100.7

Q ss_pred             CCCcHHHHHHHc-CcHHHHHHHHHhchhcccchHHHHHHHHHhc--CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCC
Q 014436           96 KGDTPLHVAAKF-GHSDIVRVLIDRAKLAQDGDEAARQMIRMVN--NKKNTALHDAMFPGNMEVVKILTREDPDYPYSAN  172 (424)
Q Consensus        96 ~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  172 (424)
                      .+.|+||.|+.. |+.++++.|+++|++           ++..+  ..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-----------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d  265 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD-----------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QAD  265 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC-----------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC-----------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCC
Confidence            445788888888 888888888888877           44555  678888888888888888888888888866 677


Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcc--cccCCCCChHH
Q 014436          173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL--KVTDQYGWTPI  250 (424)
Q Consensus       173 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~t~l  250 (424)
                      ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..    ++.+++++|+..+....  ...+..+.|++
T Consensus       266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~----g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l  341 (368)
T 3jue_A          266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET----ANADIVTLLRLAKMREAEAAQGQAGDETYL  341 (368)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHC----------------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC----CCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence            7788888888888888888888888888888888888888888887    88888888877653321  12333444555


Q ss_pred             HHHH
Q 014436          251 HYAA  254 (424)
Q Consensus       251 ~~a~  254 (424)
                      ..+.
T Consensus       342 ~i~~  345 (368)
T 3jue_A          342 DIFR  345 (368)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            4443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=4.1e-21  Score=143.75  Aligned_cols=108  Identities=27%  Similarity=0.348  Sum_probs=92.7

Q ss_pred             hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      .+|..|.||||+|+..|+.+++++|+++|++           ++..|..|.||||+|+..++.+++++|+++|+++. ..
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~   71 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-AR   71 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-cc
Confidence            3578899999999999999999999999887           55678889999999999999999999999988866 67


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcH
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA  211 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~  211 (424)
                      +..|.||||+|+..++.+++++|+++|++++.++..+.+|
T Consensus        72 d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           72 SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            7789999999999999999999999999988888888776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.1e-20  Score=141.45  Aligned_cols=106  Identities=25%  Similarity=0.219  Sum_probs=98.8

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHH
Q 014436          278 DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVF  357 (424)
Q Consensus       278 ~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  357 (424)
                      ..|.||||.|+..++.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++.   |++++.+|..|+||||+|
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence            48899999999999999999999999986 78999999999999999999999999998   899999999999999999


Q ss_pred             HhcCCcchhhhhccccchhhhhhcCCCCchh
Q 014436          358 AAVRPSEFNRYMSRTTHANYQAVNDQNVSVG  388 (424)
Q Consensus       358 ~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l  388 (424)
                      +..++.+++++|++ +|++++.++..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            99999999999988 8999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=1.4e-19  Score=129.56  Aligned_cols=92  Identities=32%  Similarity=0.441  Sum_probs=85.2

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF  219 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~  219 (424)
                      +|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-
Confidence            47899999999999999999999999976 7888999999999999999999999999999999999999999999999 


Q ss_pred             ccCCcHHHHHHHHhhcC
Q 014436          220 DFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       220 ~~~~~~~~~~~Ll~~~~  236 (424)
                         ++.+++++|++.++
T Consensus        79 ---~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 ---GHLEVVKLLLEAGA   92 (93)
T ss_dssp             ---TCHHHHHHHHHTTC
T ss_pred             ---CCHHHHHHHHHcCC
Confidence               99999999998765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=2.9e-20  Score=166.88  Aligned_cols=144  Identities=17%  Similarity=0.164  Sum_probs=115.2

Q ss_pred             cCCcchhhhhhhHH-hhhccHHHHHHHHHhCchhhhhhc--cCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHH
Q 014436           57 TRNTILHINIMCQD-AENASTKFVEEILEICPALLIQVN--AKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQM  133 (424)
Q Consensus        57 ~g~t~L~~A~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  133 (424)
                      .+.|+||.|  +.. ++.+++++|++.    +.+++..+  ..|.||||+|+..|+.+++++|+++|++           
T Consensus       198 ~~~t~L~~A--a~~~g~~~~v~~LL~~----Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-----------  260 (368)
T 3jue_A          198 HPGALLFRA--SGHPPSLPTMADALAH----GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-----------  260 (368)
T ss_dssp             CHHHHHHHH--TSSSCCHHHHHHHHHT----TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCCcHHHHH--HHccCCHHHHHHHHHc----CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-----------
Confidence            456799999  999 999999999885    77788877  8899999999999999999999999998           


Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCC---CCCCCCCCCCc
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT---SLSHEGPNGKT  210 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~~~t  210 (424)
                      ++..|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..++.+++++|+..+.   +....+..+.|
T Consensus       261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t  339 (368)
T 3jue_A          261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET  339 (368)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCC
Confidence            67888999999999999999999999999999976 788899999999999999999999998873   33344556777


Q ss_pred             HHHHHHHc
Q 014436          211 ALHAAVMY  218 (424)
Q Consensus       211 ~L~~a~~~  218 (424)
                      +++.+...
T Consensus       340 ~l~i~~~~  347 (368)
T 3jue_A          340 YLDIFRDF  347 (368)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            77766543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=3.4e-18  Score=126.43  Aligned_cols=93  Identities=26%  Similarity=0.374  Sum_probs=60.3

Q ss_pred             hhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCC
Q 014436           90 LIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPY  169 (424)
Q Consensus        90 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  169 (424)
                      ....+.+|.||||+|+..|+.+++++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|++++ 
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-   84 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-   84 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-
Confidence            344566667777777777777777777777665           44556667777777777777777777777766654 


Q ss_pred             CCCCCCCcHHHHHHhcCChHHHHHH
Q 014436          170 SANDYGKTPLYMAAESESSDMVLTL  194 (424)
Q Consensus       170 ~~~~~g~t~L~~A~~~~~~~~v~~L  194 (424)
                      ..+..|.||||+|+..++.+++++|
T Consensus        85 ~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           85 AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            5566677777777777777766654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=4.7e-17  Score=120.26  Aligned_cols=93  Identities=25%  Similarity=0.322  Sum_probs=82.7

Q ss_pred             HHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          134 IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       134 i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      ....+.+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            56778899999999999999999999999999876 67888999999999999999999999999999999999999999


Q ss_pred             HHHHccccCCcHHHHHHH
Q 014436          214 AAVMYFDFKGDHHAMRQL  231 (424)
Q Consensus       214 ~a~~~~~~~~~~~~~~~L  231 (424)
                      +|+..    ++.+++++|
T Consensus        96 ~A~~~----~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDN----GNEDLAEIL  109 (110)
T ss_dssp             HHHHH----TCHHHHHHH
T ss_pred             HHHHc----CCHHHHHHh
Confidence            99999    999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-25
 Identities = 73/300 (24%), Positives = 117/300 (39%), Gaps = 22/300 (7%)

Query: 99  TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
           TPLHVA+  GH  IV+ L+ R      G         + N K  T LH A   G+ EV K
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR------GAS-----PNVSNVKVETPLHMAARAGHTEVAK 50

Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
            L +       +     +TPL+ AA    ++MV  LLEN  + +     G T LH A   
Sbjct: 51  YLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD 278
              +     + +     ++      + G+TP+H AA +GK  + +LL       N A K+
Sbjct: 110 GHVETVLALLEK-----EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 164

Query: 279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPF 338
                LH+A    +   V+ +L              +  LH A    Q++  + LL+   
Sbjct: 165 GLT-PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 339 ARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPEL 398
           +    N    +G TPLH+ A    +E    +                 +  + + G+  +
Sbjct: 223 SA---NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 279

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 6e-24
 Identities = 78/353 (22%), Positives = 127/353 (35%), Gaps = 39/353 (11%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPA 88
           L  A+  G+    K++ +      ++     T LH+      A    T+  + +L+   A
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA-----ARAGHTEVAKYLLQ-NKA 57

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ---------------- 132
            +        TPLH AA+ GH+++V++L++          A                   
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 117

Query: 133 ------MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
                     +  K  T LH A   G + V ++L   D   P +A   G TPL++A    
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHN 176

Query: 187 SSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYG 246
           + D+V  LL    S      NG T LH A      +     ++                G
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-----ESVQG 231

Query: 247 WTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPEC 306
            TP+H AA  G   +  LL   Q   N+ +K   +T LHL A  GH    + ++      
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 307 FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
            +      +  LH A     ++ +K        +  +N     G +PLH  A 
Sbjct: 291 -DATTRMGYTPLHVASHYGNIKLVK---FLLQHQADVNAKTKLGYSPLHQAAQ 339

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 8e-24
 Identities = 73/294 (24%), Positives = 114/294 (38%), Gaps = 22/294 (7%)

Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL 122
             +     A           L    A    +  KG TPLHVAAK+G   +  +L++R   
Sbjct: 98  AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER--- 154

Query: 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA 182
                               T LH A+   N+++VK+L       P+S    G TPL++A
Sbjct: 155 --------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIA 205

Query: 183 AESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVT 242
           A+    ++  +LL+   S + E   G T LH A         H  M  L   K++   + 
Sbjct: 206 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE-----GHAEMVALLLSKQANGNLG 260

Query: 243 DQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL 302
           ++ G TP+H  A  G   + D+L I       A      T LH+A+  G+ + V+ +   
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVL-IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL-LQ 318

Query: 303 APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
                       ++ LH A        +  LL+N       NE  + G TPL +
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 9e-24
 Identities = 69/361 (19%), Positives = 130/361 (36%), Gaps = 54/361 (14%)

Query: 71  AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAA 130
           +       V+ +L+   A     N K +TPLH+AA+ GH+++ + L+             
Sbjct: 8   SFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----------- 55

Query: 131 RQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPD------------------------ 166
           +  +        T LH A   G+  +VK+L   + +                        
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 167 --------YPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
                           G TPL++AA+     +   LLE     +  G NG T LH AV +
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKD 278
                ++  + +L   +          G+TP+H AA   +  +   L +    +  A+  
Sbjct: 176 -----NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL-LQYGGSANAESV 229

Query: 279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPF 338
           + +T LHLAA  GHA  V  +         L +      LH       +     L+++  
Sbjct: 230 QGVTPLHLAAQEGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG- 287

Query: 339 ARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPEL 398
             ++++     G TPLHV +     +  +++ +               +    + G+ ++
Sbjct: 288 --VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 399 L 399
           +
Sbjct: 346 V 346

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 3e-20
 Identities = 63/257 (24%), Positives = 101/257 (39%), Gaps = 11/257 (4%)

Query: 143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202
           T LH A F G++ +VK L +     P  +N   +TPL+MAA +  +++   LL+N   ++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN 262
            +  + +T LH A         H  M +L     +   +    G TP+H AA  G     
Sbjct: 61  AKAKDDQTPLHCAARI-----GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 263 DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
             L   + +     K +  T LH+AA  G  R  E +L                 LH AV
Sbjct: 116 LALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAV 173

Query: 323 ASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND 382
               L  +K LL    +    +     G TPLH+ A     E  R + +   +       
Sbjct: 174 HHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 230

Query: 383 QNVSVGHIMKYGYPELL 399
               +    + G+ E++
Sbjct: 231 GVTPLHLAAQEGHAEMV 247

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 1e-18
 Identities = 54/262 (20%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 67  MCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDG 126
           +   A+    +  E +LE   A        G TPLHVA    + DIV++L+ R       
Sbjct: 136 LHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 127 DEAAR----------------------QMIRMVNNKKNTALHDAMFPGNMEVVKILTRED 164
                                            + +  T LH A   G+ E+V +     
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LLSK 253

Query: 165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGD 224
                  N  G TPL++ A+     +   L+++   +      G T LH A  Y      
Sbjct: 254 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-----G 308

Query: 225 HHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTA 283
           +  + +   + ++ +    + G++P+H AA  G   I  LL +   A  N    D   T 
Sbjct: 309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-LKNGASPNEVSSDGT-TP 366

Query: 284 LHLAAGRGHARTVETILSLAPE 305
           L +A   G+    + +  +  E
Sbjct: 367 LAIAKRLGYISVTDVLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 1e-17
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 26/255 (10%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPA 88
           L  A    N +  K +               T LHI       E          L     
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV------ARSLLQYGG 222

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDA 148
                + +G TPLH+AA+ GH+++V +L+ +           +    + N    T LH  
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSK-----------QANGNLGNKSGLTPLHLV 271

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG 208
              G++ V  +L +       +    G TPL++A+   +  +V  LL++   ++ +   G
Sbjct: 272 AQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 209 KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE-- 266
            + LH A         H  +  L  +  +        G TP+  A   G   + D+L+  
Sbjct: 331 YSPLHQAAQQ-----GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 267 IDQTA-TNIADKDRK 280
            D+T+   ++DK R 
Sbjct: 386 TDETSFVLVSDKHRM 400

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
           +T LH+A+  GH   V+ +L        + + +    LH A  +   +  K LL+N   +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN---K 56

Query: 341 ILINEGDAKGNTPLHVFAAVRPSEFNRYM 369
             +N       TPLH  A +  +   + +
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 3e-18
 Identities = 51/275 (18%), Positives = 87/275 (31%), Gaps = 38/275 (13%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
           N +L      +  +N     V+++LE    +  Q    G TPLH A +    DIV +L+ 
Sbjct: 6   NHLLI-----KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 119 RAKLA----------------------QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
                                           +    +   +    TA  +A   G ++ 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 157 VKILTREDPD---------YPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN 207
           +K L +   +                 G T L  AAE    +++  LL+   +  +   N
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 208 GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI 267
                    +      D  A+  L     + + V  + G TP+  A       +   L +
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL-L 239

Query: 268 DQTATNIADKDRK-MTALHLAAGRGHARTVETILS 301
           +Q    I D D    TAL LA      +  E +  
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 1e-17
 Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 27/274 (9%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDR-AKL-AQDGDEAARQMIRMVNNKKNTALHDAMFPGN 153
           + +  L  A +    D+V+ L++  A +  Q+                 T LH+A+    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAVQMSR 51

Query: 154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH 213
            ++V+ L       P      G TP  +AA + S  ++   L     ++     G TA  
Sbjct: 52  EDIVE-LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM 110

Query: 214 AAVMYFDFKG-----DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEID 268
            A +Y   K         A   L  + K   +   + G T +  AA  G   +  +L +D
Sbjct: 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL-LD 169

Query: 269 QTATNIADKDRK----MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS 324
           +   ++   D      +    L++       +  +L        +   R    L  AV  
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA 358
             L  ++ LL        IN+ D+ G T L +  
Sbjct: 230 KHLGLVQRLLEQEHIE--INDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 2e-17
 Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 16/270 (5%)

Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
           + N  L  A+   ++++V+ L     +  +   + G TPL+ A +    D+V  LL +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
                  NG T    A +    K     + +     +      D YG+T    AA +GK 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-----CDFYGFTAFMEAAVYGKV 118

Query: 260 WINDLLEIDQTATNIADKDRKM---------TALHLAAGRGHARTVETILSLAPECFELV 310
                L       N+  K ++          TAL  AA +GH   ++ +L          
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 311 DNRRWNFLHYAVASFQLQDLKPLLRNPFAR-ILINEGDAKGNTPLHVFAAVRPSEFNRYM 369
           DN   N L +A+ S    D++ +          +N    +G TPL +    +     + +
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 370 SRTTHANYQAVNDQNVSVGHI-MKYGYPEL 398
               H      +    +   + ++    ++
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 1e-13
 Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 15/241 (6%)

Query: 29  LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPA 88
           L  A      +  + + R                +       A  A +  + ++     A
Sbjct: 43  LHNAVQMSREDIVELLLRHGA------DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

Query: 89  LLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDA 148
            + + +  G T    AA +G    ++ L  R        +      R+      TAL DA
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL-RKGGATALMDA 155

Query: 149 MFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVL----TLLENCTSLSHE 204
              G++EV+KIL  E      + ++ G+  L  A  S     V      LL++   ++  
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 205 GPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDL 264
           G  GKT L  AV           +++L  ++   +  TD  G T +  A       I +L
Sbjct: 216 GERGKTPLILAVEK----KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 265 L 265
           L
Sbjct: 272 L 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-12
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 27/131 (20%)

Query: 94  NAKGDTPLHVAAKFGHSDIVRVLIDRAKL---AQDGDEAARQM----------------- 133
              G T L  AA+ GH +++++L+D       A D       +                 
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 134 -------IRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE 186
                  + +   +  T L  A+   ++ +V+ L  ++       +  GKT L +A E +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 187 SSDMVLTLLEN 197
              +   L + 
Sbjct: 265 LKKIAELLCKR 275

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 4e-18
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 22/238 (9%)

Query: 65  NIM-CQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLA 123
           N+M C  A +   + ++E +    +L  + +    T LH A   GH++IV  L+      
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL---- 59

Query: 124 QDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAA 183
                     +   ++   + LH A   G  E+VK L  +      + N  G TPL+ AA
Sbjct: 60  -------GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAA 111

Query: 184 ESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTD 243
                ++ + LLE   +   +     TA+H        KG+   +  L   K S   + D
Sbjct: 112 SKNRHEIAVMLLEGGANPDAKDHYEATAMH----RAAAKGNLKMIHILLYYKAS-TNIQD 166

Query: 244 QYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVETIL 300
             G TP+H A    +     LL + Q A   I +K+ K T L +A G G    ++ ++
Sbjct: 167 TEGNTPLHLACDEERVEEAKLL-VSQGASIYIENKEEK-TPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 5e-15
 Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 10/215 (4%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
           N  + +  + G +E +K     D       +   +T L+ A  +  +++V  LL+    +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
           + +   G + LH A            + +    K + +   +Q G TP+HYAA   ++ I
Sbjct: 64  NDKDDAGWSPLHIAASAG-----RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 262 NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
             +L ++  A   A    + TA+H AA +G+ +    IL        + D      LH A
Sbjct: 119 AVML-LEGGANPDAKDHYEATAMHRAAAKGNLKM-IHILLYYKASTNIQDTEGNTPLHLA 176

Query: 322 VASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
               ++++ K L+        I   + +  TPL V
Sbjct: 177 CDEERVEEAKLLVSQ---GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 15  LGSKAANQSQTDPK----LLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQD 70
           + +  +  ++TD      L  A + G+ E  + + +  +          + LHI      
Sbjct: 23  ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR 82

Query: 71  AENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAA 130
                   + + L    A +  VN  G TPLH AA     +I  +L++            
Sbjct: 83  ------DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-----------G 125

Query: 131 RQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDM 190
                  ++ + TA+H A   GN++++ IL           +  G TPL++A + E  + 
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 191 VLTLLENCTSLSHEGPNGKTALHAA 215
              L+    S+  E    KT L  A
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 6e-10
 Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 5/184 (2%)

Query: 221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRK 280
           + G    +++     KSL   TDQ   T +H+A   G   I + L       N  D    
Sbjct: 12  YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 71

Query: 281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFAR 340
                  A       +   L         V+      LHYA +  + +    LL      
Sbjct: 72  SPLHI--AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---G 126

Query: 341 ILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLV 400
              +  D    T +H  AA    +    +     +      + N  +         E   
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 401 INLS 404
           + +S
Sbjct: 187 LLVS 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.1 bits (199), Expect = 2e-17
 Identities = 42/320 (13%), Positives = 90/320 (28%), Gaps = 38/320 (11%)

Query: 3   SIISIEFEEAPSLG-SKAANQSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTI 61
           S++++ ++EA  +      N  Q    L    A  N            +       +   
Sbjct: 38  SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNA--------KQLWSDAHKKGIK 89

Query: 62  LHINIMCQDAENASTKFVE--EILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR 119
             +      A    +  ++   +L     ++  + A+      +AA+ GH  ++  L + 
Sbjct: 90  SEVICFVA-AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 120 AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKT 177
                    A  +++ M+  +   A   A   G++ V+  L              +    
Sbjct: 149 ---------APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 199

Query: 178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV-----MYFDFKGDHHAMRQLF 232
             + A      +++  LL+    L++   +        V      + +   + H   +L 
Sbjct: 200 FRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 259

Query: 233 GRKKSLLKVT------DQYGWTPIHYAAYHGKYWINDLL----EIDQTATNIADKDRKMT 282
                   VT        Y    +              L     I   A           
Sbjct: 260 NPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 319

Query: 283 ALHLAAGRGHARTVETILSL 302
            L LA   G+      +LS+
Sbjct: 320 LLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 32/299 (10%), Positives = 71/299 (23%), Gaps = 22/299 (7%)

Query: 78  FVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMV 137
             +  +      L+ ++ K    + +        + ++L           +         
Sbjct: 27  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86

Query: 138 NNKKNTALHDAMFPGNMEVVKILTR--EDPDYPYSANDYGKTPLYMAAESESSDMVLTLL 195
             K       A   G    +  L       +              +AAE+    ++  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 196 ENCTSLSHEGPN--GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYA 253
           E   +            A   A         +          ++   +  +  +     A
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL--APTEATAMIQAENYYAFRWAA 204

Query: 254 AYHGKYWINDLL-----EIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE--C 306
              G + + + L      +     +  +   K     +A      + +     L+     
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 307 FELVDNRR-------WNFLHYAVASFQLQDLKPLLRNPFARILINEGD--AKGNTPLHV 356
           F+LV              L        L D++ LL  P  + L          N  L +
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 5e-07
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 30/237 (12%)

Query: 172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQL 231
            +Y   P          + +     +   LS    + K A+H   ++     +   +RQL
Sbjct: 8   ENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIH---IFLPGTKNMEQVRQL 64

Query: 232 FGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRG 291
                +      +  W+  H                                  +AA  G
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKS-----------------------EVICFVAAITG 101

Query: 292 HARTVETILSL--APECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAK 349
            +  ++T+  L  + E  +++    +     A  +  L  L  L        ++    A+
Sbjct: 102 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAE 160

Query: 350 GNTPLHVFAAVRPSEFNRYM-SRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI 405
                 + A          +           +  +N         G     VIN  +
Sbjct: 161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 8e-16
 Identities = 38/265 (14%), Positives = 77/265 (29%), Gaps = 36/265 (13%)

Query: 46  REVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK----GDTPL 101
           +E+  SL    +       +   Q    +    ++E+ +  P   + +N      G+TPL
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 102 HVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILT 161
           H      + ++V+ L+                    +N   + L  A+   N        
Sbjct: 112 HWLTSIANLELVKHLVKH-----------GSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 162 REDPDYPYSAND---YGKTPLYMAAESES-------------SDMVLTLLENCTSLSHEG 205
                            +T L+    +                 M   + +    +    
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
              ++  +            +   +      ++L   D  G T ++ AA  G   I D L
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWI--IANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 266 EIDQTA-TNIADKDRKMTALHLAAG 289
            +D  A   IA+K   +  +   AG
Sbjct: 279 -LDYGADPFIANKS-GLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 2e-14
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 18/201 (8%)

Query: 137 VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLE 196
           V+   NT LH      N+E+VK L +   +     ++ G++ L  A +S ++    T   
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 197 NCTSLSHEG----PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL--------KVTDQ 244
               L           +T LH  ++     G   A +         +        +    
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 245 YGWTPIHYAAYHGKYWINDLLEIDQTAT---NIADKDRKMTALHLAAGRGHARTVETILS 301
              +  +      K  I + L++        N  D +   T L++AA  G+   V+ +L 
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLD 280

Query: 302 LAPECFELVDNRRWNFLHYAV 322
              +   + +      + +  
Sbjct: 281 YGAD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 19/236 (8%)

Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLEN 197
            +      H +      EV         +     +++G TPL+      + ++V  L+++
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129

Query: 198 CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
            ++  +    G++ L  A +      D      L       L + D    T +H+     
Sbjct: 130 GSNRLYGDNMGESCLVKA-VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 258 KYWIN------------DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS--LA 303
                              +   Q     +  + K +  +   G      +E +    + 
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 304 PECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAA 359
                  D+     L+ A     +  +  LL            +  G  P+  F A
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVD-FGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 7e-14
 Identities = 49/253 (19%), Positives = 76/253 (30%), Gaps = 19/253 (7%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPG 152
           V   GDT LH+A    H   +  L+           A  + + + N+   TALH A   G
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF--------SAGHEYLDLQNDLGQTALHLAAILG 56

Query: 153 NMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNG---- 208
               V+            A   G T L++A    +      LL+   S   +  +     
Sbjct: 57  EASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

Query: 209 -----KTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
                    HA           +         +  L+  +  G TP+H A  H    +  
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVA 323
           LL       N  +     T LHLA     A  +E +L    +            L  A+ 
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALL 234

Query: 324 SFQLQDLKPLLRN 336
                  + L  +
Sbjct: 235 RPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 7e-10
 Identities = 45/231 (19%), Positives = 66/231 (28%), Gaps = 13/231 (5%)

Query: 136 MVNNKKNTALHDAMFPGNMEVVKILTRE--DPDYPYSANDYGKTPLYMAAESESSDMVLT 193
            V    +TALH A+   +   +  L       +Y    ND G+T L++AA    +  V  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 194 LLENCTSLSHEGPNGKTALHAA--------VMYFDFKGDHHAMRQLFGRKKSLLKVTDQY 245
           L      +      G TALH A                  H               T   
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 246 GWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPE 305
              P    +        +  + D      A+     T LH+A     A  V  +     +
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 306 CFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
             +         LH AV +     L+ LL+              G TPL  
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGS 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 238 LLKVTDQYGWTPIHYAAYHGKYWINDLL---EIDQTATNIADKDRKMTALHLAAGRGHAR 294
           +     + G T +H A  H      D L          ++ +     TALHLAA  G A 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLG-QTALHLAAILGEAS 59

Query: 295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN 336
           TVE + +         +      LH A           LL+ 
Sbjct: 60  TVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQP 100

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 28/98 (28%)

Query: 307 FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFN 366
           F  V       LH AV       L  LL        ++  +  G T LH+ A +  +   
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 367 RYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLS 404
             +         A    + ++    +        + L 
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (164), Expect = 1e-13
 Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 3/215 (1%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
           N  LH A        V+ L    P      +  G+ PL+ +   ++ ++   LL    ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
           + +     +      +                  K  L      G T +H A     + +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 262 NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
           +  L  +  +  I D       LH AA  G  + +E +  L        D + W  L +A
Sbjct: 121 SQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 322 VASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           +A         L+    A    +  D KG     V
Sbjct: 180 LAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 6e-13
 Identities = 49/244 (20%), Positives = 83/244 (34%), Gaps = 21/244 (8%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
           N  LH               V+E+L   P+LL+Q +  G  PLH +  F   +I   L+ 
Sbjct: 1   NYPLHQA-----CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 119 RAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP 178
           +        E         ++                V  +  R          + G T 
Sbjct: 56  K-------MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 108

Query: 179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL 238
           L++A   +  ++   L+EN  S+  +    +  LH         G    +  L G  KS 
Sbjct: 109 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH----RAASVGSLKLIELLCGLGKSA 164

Query: 239 LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVE 297
           +   D+ GWTP+ +A   G      LL     A  ++ D      A  +A    + +  +
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVKK 220

Query: 298 TILS 301
             L+
Sbjct: 221 FFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 4e-12
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 11/225 (4%)

Query: 98  DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVV 157
           + PLH A        V+ L+           +   ++   +      LH ++     E+ 
Sbjct: 1   NYPLHQACMENEFFKVQELL----------HSKPSLLLQKDQDGRIPLHWSVSFQAHEIT 50

Query: 158 KILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVM 217
             L  +  +                      ++ +        L  +           + 
Sbjct: 51  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 110

Query: 218 YFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADK 277
               K      + L     S+ ++ D++   P+H AA  G   + +LL     +      
Sbjct: 111 LAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 169

Query: 278 DRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
            +  T L  A   GH      ++      ++LVDN+       A+
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 7e-08
 Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 4/194 (2%)

Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
             LH A M      +   +++L   K SLL   DQ G  P+H++     + I   L    
Sbjct: 2   YPLHQACME----NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

Query: 270 TATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD 329
              N+ D                                 ++      +     +   + 
Sbjct: 58  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW 117

Query: 330 LKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGH 389
            +           +   D     PLH  A+V   +    +     +     + Q  +   
Sbjct: 118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 390 IMKYGYPELLVINL 403
                      + L
Sbjct: 178 HALAEGHGDAAVLL 191

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 34/219 (15%), Positives = 60/219 (27%), Gaps = 9/219 (4%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           GD+ LH+A       +   +I   ++  D        +   NN + T LH A+     E+
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR--QVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEI 54

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT-SLSHEGPNGKTALHAA 215
            + L     D                 +   + + +      T  L           H  
Sbjct: 55  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 114

Query: 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIA 275
           +      G    +  L      +       G T +H A       +  LL       N  
Sbjct: 115 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 174

Query: 276 DKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR 314
                 +   L  GR   R  + +  L  E  +++    
Sbjct: 175 TYQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 3e-08
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 7/186 (3%)

Query: 175 GKTPLYMAAESESSDMVLTLLE----NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQ 230
           G + L++A   E   + + ++     +   L+ +    +T LH AV+    +     +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 231 LFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR 290
               +    +                              +   A      T LHLA+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 291 GHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKG 350
           G+   VE ++SL  +            LH AV       +  LL+       +N    +G
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQG 178

Query: 351 NTPLHV 356
            +P  +
Sbjct: 179 YSPYQL 184

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 36/191 (18%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVR- 114
           ++ LH+        +       E++      L  +N +     TPLH+A      +I   
Sbjct: 3   DSFLHLA-----IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

Query: 115 ---------------------------VLIDRAKLAQDGDEAARQMIRMVNNKKNTALHD 147
                                      +                 +++  N   +T LH 
Sbjct: 58  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 148 AMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPN 207
           A   G + +V++L     D        G+T L++A + ++ D+V  LL+    ++     
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 208 GKTALHAAVMY 218
           G +        
Sbjct: 178 GYSPYQLTWGR 188

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 5/196 (2%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
           +G + LH A+++ +       +RQ+     + L   +    TP+H A    +  I + L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 59

Query: 267 IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA--VAS 324
                  + D                A       S        +        H    +AS
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 119

Query: 325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQN 384
                    L       +  +    G T LH+   ++  +    +     A+   V  Q 
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL-LKCGADVNRVTYQG 178

Query: 385 VSVGHI-MKYGYPELL 399
            S   +        + 
Sbjct: 179 YSPYQLTWGRPSTRIQ 194

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
            T LH+ +  Q+ +  S          C A + +V  +G +P  +      + I + L  
Sbjct: 146 RTALHLAVDLQNPDLVSLLL------KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 119 R 119
            
Sbjct: 200 L 200

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.8 bits (164), Expect = 2e-13
 Identities = 43/247 (17%), Positives = 68/247 (27%), Gaps = 12/247 (4%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
             T LH  A    ++    LI           A    +  ++  +NT L  A+      +
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA---DVNAMDCDENTPLMLAVLARRRRL 89

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAE--SESSDMVLTLLENCTSLSHEGPNGKTALHA 214
           V  L +   D               AA         +L   +    +     NG TAL  
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 149

Query: 215 AV------MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEID 268
                        K       ++     +        G T +HYAA      I   L  +
Sbjct: 150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 209

Query: 269 QTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQ 328
           + +      +   T + LAA  G    V  ++       E VD         A A+    
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHN 268

Query: 329 DLKPLLR 335
            +    R
Sbjct: 269 IVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 31/275 (11%)

Query: 98  DTPLHVA-AKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           ++P+ +     G   I   +   +    D                 T LH      + E 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID------------PRHNRTVLHWIASNSSAEK 48

Query: 157 VKILTREDPDYPYSA-------NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
            + L   +     +A       +    TPL +A  +    +V  L++     +    + +
Sbjct: 49  SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER 108

Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQ 269
           +ALH A    DF    + +     +        +      I           +  L +++
Sbjct: 109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 168

Query: 270 TATNI--------ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA 321
            A           ++K +  TALH AA   +   V+ ++       +  D      +  A
Sbjct: 169 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 228

Query: 322 VASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
               +++ +  L++       +   DA  +T   +
Sbjct: 229 AQEGRIEVVMYLIQQ---GASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 6e-09
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 67  MCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDR-AKLAQD 125
           +   A+ ++   V+ ++    +   + +  G TP+ +AA+ G  ++V  LI + A     
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---- 246

Query: 126 GDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR 162
                   +  V+   +TA   A    +  +V I  R
Sbjct: 247 --------VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 24/175 (13%), Positives = 42/175 (24%), Gaps = 32/175 (18%)

Query: 248 TPIHYAAYHGKYWINDLLE-IDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPEC 306
           +PI         +   + E I + + NI D     T LH  A    A   E ++    + 
Sbjct: 2   SPIKLHTEAAGSY--AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 307 FELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFN 366
                                           A   +N  D   NTPL +    R     
Sbjct: 60  CIA-----------------------------AGADVNAMDCDENTPLMLAVLARRRRLV 90

Query: 367 RYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSILSTYKSRFLFHYLFFY 421
            Y+ +           +  ++          ++V  L+                 
Sbjct: 91  AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 145

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
           GDTPLH+A   G+   V  L++     Q G E     + + NN + T LH A+    +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL--FQQGGRE-----LDIYNNLRQTPLHLAVI-TTLPS 54

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV 216
           V  L       P + + +G+T  ++A E  S   +  LL++    + +          A+
Sbjct: 55  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 114

Query: 217 MYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIAD 276
                      ++ L  R   +  V  + G +P+ +A  +    +  LL       N   
Sbjct: 115 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 174

Query: 277 KDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAV 322
                  LH A+GRG    V T++    +   L +      L  A 
Sbjct: 175 YSGSSA-LHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 39/228 (17%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAK---GDTPLHVAAKFGHSDIVRV 115
           +T LHI          +   V  ++ +      +++       TPLH+A       +VR+
Sbjct: 4   DTPLHIA-----VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

Query: 116 L--------------------------IDRAKLAQDGDEAARQMIRMVNNKKNTALHDAM 149
           L                              +   D        +   N    TALH A+
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 150 FPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGK 209
                E V++L     D        G++PL  A E+ S  MV  LL++  +++ +  +G 
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 178

Query: 210 TALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG 257
           +ALH+A            + +   R  +   + + +  TP+  A    
Sbjct: 179 SALHSASGR-----GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL 122
                   A   ++  + ++L    A +      G + LH A+  G   +VR L+     
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR---- 198

Query: 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
                  +     + N   +T L  A     +++++
Sbjct: 199 -------SGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKL 122
            +  +         + V+ +LE    +       G +PL  A +     +V++L+     
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--- 166

Query: 123 AQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA 182
                      +       ++ALH A   G + +V+ L R   D     N +  TPL +A
Sbjct: 167 --------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 217

Query: 183 AESESSDMV 191
                 D++
Sbjct: 218 RSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 11/198 (5%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQL---FGRKKSLLKVTDQYGWTPIHYAAYHGKYWIND 263
           +G T LH AV+     G+  A+ +L   F +    L + +    TP+H A       +  
Sbjct: 2   DGDTPLHIAVVQ----GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 57

Query: 264 LLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRR--WNFLHYA 321
           LL     +    D+  +  A      R        + S AP   +L          LH A
Sbjct: 58  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 117

Query: 322 VASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVN 381
           V +   + ++ LL        ++     G +PL            + + +        + 
Sbjct: 118 VNTECQETVQLLLERGADIDAVDIKS--GRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 175

Query: 382 DQNVSVGHIMKYGYPELL 399
             + ++      G   L+
Sbjct: 176 SGSSALHSASGRGLLPLV 193

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 38  AEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKG 97
            E       +++               + +   +       V  ++    A     N   
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHN 210

Query: 98  DTPLHVAAKFGHSDIVR 114
           DTPL VA      DI+R
Sbjct: 211 DTPLMVARSRRVIDILR 227

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 19/224 (8%)

Query: 75  STKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMI 134
           + + + ++L     L   ++  G+T LH+AA+F  +D  + L+D                
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-----------GADA 49

Query: 135 RMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTL 194
              +N   T LH A+    M V +IL R       +    G TPL +AA      MV  L
Sbjct: 50  NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 109

Query: 195 LENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA 254
           +     ++    +GKTALH A    + +  +  +     R        D    TP+  AA
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA-----QDDKDETPLFLAA 164

Query: 255 YHGKYWINDLLEIDQTA-TNIADKDRKMTALHLAAGRGHARTVE 297
             G Y  +  L +D  A   I D         +A+ R H   V 
Sbjct: 165 REGSYEASKAL-LDNFANREITDHM-DRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 9/202 (4%)

Query: 155 EVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHA 214
           +V+  L  +  +   + +  G+T L++AA    +D    LL+       +  +       
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG----ADANSQDNTGRT 58

Query: 215 AVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNI 274
            +            + L   + + L      G TP+  AA      + + L       N 
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 275 ADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL 334
           AD     TALH AA   +   V  +L       +  D++    L  A      +  K LL
Sbjct: 119 ADNSG-KTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 335 RNPFARILINEGDAKGNTPLHV 356
            N          D     P  V
Sbjct: 177 DN---FANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 93  VNAKGDTPLHVAAKFGHSDIVRVL 116
            +     P  VA++  H DIVR+L
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLL 208

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 47/265 (17%), Positives = 82/265 (30%), Gaps = 28/265 (10%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP 151
           +V          A   G ++ V  L++R              I   N    TALH A   
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLER-----------GADINYANVDGLTALHQACID 83

Query: 152 GNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTA 211
            N+++      E+       ++ G  PL+ AA     D+   L+     +      G T 
Sbjct: 84  DNVDM-VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 212 LHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA 271
           L  A      +   + + +     ++  K  ++            G              
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV--------- 193

Query: 272 TNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLK 331
                     TALH+AA +G+   +  +L  A     + D   W  LH A    + +  +
Sbjct: 194 ---RHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 332 PLLRNPFARILINEGDAKGNTPLHV 356
            L+ N      +   +  G T   V
Sbjct: 250 ILVEN---LCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 132 QMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMV 191
                      TALH A   G  EV+K+L +   D     +  G TPL+ AA     +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 192 LTLLENCTSLSHEGPNGKTALHAA 215
             L+EN   +      G+TA   A
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 9/129 (6%)

Query: 146 HDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEG 205
                   +   +                G T L++AA    ++++  L++    ++ + 
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229

Query: 206 PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
            +G T LHAA  +           ++       ++  ++ G T    A       I   L
Sbjct: 230 YDGWTPLHAAAHW-----GKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYL 280

Query: 266 EIDQTATNI 274
           E  Q   N+
Sbjct: 281 EELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 21/102 (20%)

Query: 59  NTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
            T LH+       E      V ++L      +   +  G TPLH AA +G  +  R+L++
Sbjct: 200 GTALHVAAAKGYTE------VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 119 RAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKIL 160
                          +  VN    TA   A    + +++  L
Sbjct: 254 -----------NLCDMEAVNKVGQTAFDVA----DEDILGYL 280

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 5/213 (2%)

Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGR 234
                  A  S  ++ VL LLE    +++   +G TALH A +      D+  M +    
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-----DNVDMVKFLVE 94

Query: 235 KKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHAR 294
             + +   D  GW P+H AA  G   I + L          + +                
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 295 TVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPL 354
               +     +            L  A        +  +         ++   AKG T +
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 355 HVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSV 387
                    + N          + A +      
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 4e-08
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 8/162 (4%)

Query: 140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCT 199
           +    L  A   G+++ V+ L   +  +P + N +GKT L +     ++           
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIA------LEL 54

Query: 200 SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY 259
                 PN +     + ++   +       ++     + + V D  G  PIH A   G  
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 260 WINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
            +       ++  +  D    +T L LA  RG    V+ +  
Sbjct: 115 AVVSF-LAAESDLHRRDAR-GLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 31/170 (18%), Positives = 48/170 (28%), Gaps = 18/170 (10%)

Query: 96  KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNME 155
           +    L  AA  G    VR L+ R  +              +N    TAL   MF     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELV----------HPDALNRFGKTALQVMMFGSTAI 50

Query: 156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
            +++L +         +               +  VL        ++     G   +H A
Sbjct: 51  ALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD--VNVPDGTGALPIHLA 108

Query: 216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
           V                   +S L   D  G TP+  A   G   + D+L
Sbjct: 109 VQEGHTAVVSFLA------AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 85  ICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
              + L + +A+G TPL +A + G  D+V +L  
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 99  TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
             L  AA+ G  D VR+L+           A      +  +  + A     F        
Sbjct: 4   KKLLEAARAGQDDEVRILMAN--------GAPFTTDWLGTSPLHLAAQYGHFSTTEV--- 52

Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
                      +     +TPL+MAA    +++V  LL++   ++ +     TALH A  +
Sbjct: 53  --LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLE 266
                 H  + +L  +  + +    ++  T    +  +G   + ++L+
Sbjct: 111 N-----HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (109), Expect = 5e-07
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 8/156 (5%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
              L +A   G  + V+IL      +  + +  G +PL++AA+         LL    S 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
                  +T      ++      H  + ++  +  + +   D    T +H+A  H    +
Sbjct: 61  DARTKVDRT-----PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115

Query: 262 NDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE 297
            +LL       +   K  K TA  ++   G+    E
Sbjct: 116 VELLIKYGADVHTQSKFCK-TAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVL 116
                   A   + + V E+L    A +   +    T   ++   G+ D+  +L
Sbjct: 99  LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 138 NNKKNTALHDAMFPGNMEVVKILTREDPD-----YPYSANDYGKTPLYMAAESESSDMVL 192
              K  +L +A+   ++  +     +  D        + ++  +T L++A  S       
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS-- 60

Query: 193 TLLENCTSLSHEGPN--GKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPI 250
             L     L     N   +T   +  +++    D+    +L  R K+ +++ ++ G TP+
Sbjct: 61  --LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 251 HYAAYHGKYWINDLL 265
             A         +LL
Sbjct: 119 DIAKRLKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 11/157 (7%)

Query: 170 SANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP------NGKTALHAAVMYFDFKG 223
           +        L  A ++     +L    +   L+ + P        +TALH AV   D   
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD--R 58

Query: 224 DHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTA 283
               +     +    L      G T +HY           LL   + +  IA++    T 
Sbjct: 59  TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES-GETP 117

Query: 284 LHLAAGRGHARTVETILSLAPECFELVD--NRRWNFL 318
           L +A    H    E +       F         W  L
Sbjct: 118 LDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 16/156 (10%)

Query: 207 NGKTALHAAVMYFDFKGDHHAMRQLFGR-----KKSLLKVTDQYGWTPIHYAAYHGKYWI 261
           +    LH+         D   + Q +       +K  L    +   T +H A        
Sbjct: 2   DTAAKLHSLCEAVK-TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 262 NDLLEI-DQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHY 320
             +++   Q + N+  +  K +                +L       E+ +      L  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 321 AVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHV 356
           A                   +L      + N+ +HV
Sbjct: 121 AKRLKHEH---------CEELLTQALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 30/164 (18%)

Query: 64  INIMCQDAENASTKFVEEILE-----ICPALLIQVNAKGDTPLHVAAKF---GHSDIVRV 115
           ++ +C+  +      + +             L   +   +T LH+A +        IV  
Sbjct: 7   LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 116 LIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY 174
           L+     L +   + +  +           L   +                     AN+ 
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-------------IEIANES 113

Query: 175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
           G+TPL +A   +       L +          +G+   H  V Y
Sbjct: 114 GETPLDIAKRLKHEHCEELLTQAL--------SGRFNSHVHVEY 149

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 10/56 (17%), Positives = 18/56 (32%)

Query: 63  HINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLID 118
             +               ++L    A +   N  G+TPL +A +  H     +L  
Sbjct: 80  KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS 202
             L  A   G++E +  L + + +   + N +G+T L +                   L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIA------RRLLLR 55

Query: 203 HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWIN 262
              P+ K     AV++   +       Q     ++ + + D  G  P+H AA  G   + 
Sbjct: 56  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 115

Query: 263 DLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILS 301
           + L     +       +  TA  LA   G    V  + +
Sbjct: 116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 18/167 (10%), Positives = 42/167 (25%), Gaps = 17/167 (10%)

Query: 99  TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVK 158
             L  AA  G  + +  L+         +   R  ++++           +  G    +K
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 159 ILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY 218
             T     +  +   +  T                          +        +  +  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQT-----------------LLEFQADVNIEDNEGNLPLHL 105

Query: 219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLL 265
              +G    +  L     S +   +  G T    A  +G+  +  L+
Sbjct: 106 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 92  QVNAKGDTPLHVAAKFGHSDIVRVLIDR 119
             N KGDT   +A  +G +++V ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (86), Expect = 3e-04
 Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 12/119 (10%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEV 156
            D     A K G  D V+  +             +        +                
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVA------------KGEDVNRTLEGGRKPLHYAADCGQLE 49

Query: 157 VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA 215
           +            + + +  TPL  A        V  LL      + +GP+G TAL A 
Sbjct: 50  ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 9/125 (7%)

Query: 142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSL 201
           +     A+  G+++ VK    +  D   +     K   Y A   +   +          L
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL------EFLLL 56

Query: 202 SHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWI 261
                N     H   +       H +  +L   K +   V    G T +          I
Sbjct: 57  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA---I 113

Query: 262 NDLLE 266
             LL+
Sbjct: 114 KALLQ 118

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 9e-04
 Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 6/131 (4%)

Query: 173 DYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLF 232
           +     L  AA     + V  LLE   + +     G+  +   +M      +   +    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 233 GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH 292
                   +T                        +D               + LA   GH
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR------DAWGRLPVDLAEELGH 114

Query: 293 ARTVETILSLA 303
                 + + A
Sbjct: 115 RDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 97  GDTPLHVAAKFGHSDIVRVLIDRA 120
           G  P+ +A + GH D+ R L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-54  Score=394.61  Aligned_cols=357  Identities=24%  Similarity=0.263  Sum_probs=320.4

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ||||.||..|+.++|++|++.|.+++..+..|.||||+|  +..|+.+++++|++.    +..++.++..|.||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            689999999999999999999998888899999999999  999999999999997    77889999999999999999


Q ss_pred             cCcHHHHHHHHHhchhcccchHH---------------HHH-------HHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEA---------------ARQ-------MIRMVNNKKNTALHDAMFPGNMEVVKILTRED  164 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~---------------~~~-------~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  164 (424)
                      .|+.+++++|++.+.+.......               ...       .....+..+.++++.|+..++.+++++|++++
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999887654311100               000       01235677899999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCC
Q 014436          165 PDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQ  244 (424)
Q Consensus       165 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~  244 (424)
                      .++. ..+..|.+||++|+..++.+++++|+++|++++..+..|.||+|.++..    ...+....++...... ...+.
T Consensus       156 ~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~----~~~~~~~~l~~~~~~~-~~~~~  229 (408)
T d1n11a_         156 AHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ----NQVEVARSLLQYGGSA-NAESV  229 (408)
T ss_dssp             CCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhcc----chhhhhhhhhhccccc-cccCC
Confidence            9876 7788899999999999999999999999999999999999999999998    9999999998877664 67788


Q ss_pred             CCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHc
Q 014436          245 YGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVAS  324 (424)
Q Consensus       245 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~  324 (424)
                      .+.||++.|+..+..++.+.+..........+. .|.+|++.|+..++.+++++|++.|+++ +..+..+.||||.++..
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHY  307 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHS
T ss_pred             CCCCHHHHHHHhCcHhHhhhhhccccccccccC-CCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhccc
Confidence            899999999999999988888777766565554 8899999999999999999999999996 77888999999999999


Q ss_pred             CCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHH
Q 014436          325 FQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVIN  402 (424)
Q Consensus       325 ~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  402 (424)
                      ++.++++.+++.   |++++.+|..|+||||+|++.|+.+++++||+ +|+|++.+|..|+||||+|+.. +++.+++
T Consensus       308 ~~~~~~~~ll~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~-~~~~iv~  380 (408)
T d1n11a_         308 GNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL-GYISVTD  380 (408)
T ss_dssp             SCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHT-TCHHHHH
T ss_pred             Ccceeeeeeccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHc-CCHHHHH
Confidence            999999999998   89999999999999999999999999999998 8999999999999999999864 7777765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-46  Score=341.94  Aligned_cols=352  Identities=23%  Similarity=0.255  Sum_probs=303.5

Q ss_pred             eeeccccCCCCccccc----ccCCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHH
Q 014436            6 SIEFEEAPSLGSKAAN----QSQTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEE   81 (424)
Q Consensus         6 ~~~~~~~~~~~~~~~~----~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~   81 (424)
                      .|+.+..+.+...+.+    ...+.||||+||..|+.++|++|++.|++.+..+..|.||||+|  +..|+.+++++|+.
T Consensus        10 ~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~   87 (408)
T d1n11a_          10 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLE   87 (408)
T ss_dssp             HTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH
Confidence            3444444444443322    24578999999999999999999999998888899999999999  99999999999986


Q ss_pred             HHHh-----------------------------CchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHH
Q 014436           82 ILEI-----------------------------CPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQ  132 (424)
Q Consensus        82 ~~~~-----------------------------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  132 (424)
                      ....                             .+......+..+.++++.|+..++.+++++|++.|.+          
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~----------  157 (408)
T d1n11a_          88 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH----------  157 (408)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             hhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            5211                             1222345567889999999999999999999999988          


Q ss_pred             HHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHH
Q 014436          133 MIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTAL  212 (424)
Q Consensus       133 ~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L  212 (424)
                       ++..+.+|.+|||+|+..|+.+++++|+++|++++ ..+..|.||+|.++.....++...++..+......+..+.|||
T Consensus       158 -~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         158 -PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             -TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             -CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence             55678899999999999999999999999999976 7788899999999999999999999999998888999999999


Q ss_pred             HHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCC
Q 014436          213 HAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGH  292 (424)
Q Consensus       213 ~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~  292 (424)
                      ++|+..    +..++++++...... .+..+..|.||++.++..++.++.++|.+.+...+.... .+.||||.++..++
T Consensus       236 ~~a~~~----~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~-~~~t~L~~~~~~~~  309 (408)
T d1n11a_         236 HLAAQE----GHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGN  309 (408)
T ss_dssp             HHHHHT----TCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSC
T ss_pred             HHHHHh----CcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccc-cccccchhhcccCc
Confidence            999998    999999999988766 578889999999999999999999998887777666655 78899999999999


Q ss_pred             HHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhc--
Q 014436          293 ARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMS--  370 (424)
Q Consensus       293 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL--  370 (424)
                      .++++++++.|.++ +.+|..|+||||+|+++|+.+++++|++.   |++++.+|..|+||||+|++.|+.+++++|.  
T Consensus       310 ~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~---GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         310 IKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             SHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999996 88999999999999999999999999998   9999999999999999999999999997442  


Q ss_pred             cccchhhhhhc
Q 014436          371 RTTHANYQAVN  381 (424)
Q Consensus       371 ~~~g~~~~~~~  381 (424)
                      .+.+.+....|
T Consensus       386 ~~~~~~~~~~~  396 (408)
T d1n11a_         386 TDETSFVLVSD  396 (408)
T ss_dssp             CCCCSSCC---
T ss_pred             Hhccccccccc
Confidence            22455444444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-37  Score=266.65  Aligned_cols=232  Identities=21%  Similarity=0.081  Sum_probs=183.2

Q ss_pred             HhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCC--CCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHH
Q 014436          136 MVNNKKNTALHDAMFPGNMEVVKILTREDPDYP--YSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALH  213 (424)
Q Consensus       136 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~  213 (424)
                      ..+.+|.||||+|+..|+.+++++|+++|++..  ...+..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            457899999999999999999999999987632  267788999999999999999999999999999999999999999


Q ss_pred             HHHHccccCCcHHHHHHHHhhcCCcccccC---------CCCChHHHHHH---hcCChh-HHHHHhhccccccccccCCC
Q 014436          214 AAVMYFDFKGDHHAMRQLFGRKKSLLKVTD---------QYGWTPIHYAA---YHGKYW-INDLLEIDQTATNIADKDRK  280 (424)
Q Consensus       214 ~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~---------~~~~t~l~~a~---~~~~~~-~~~~l~~~~~~~~~~~~~~~  280 (424)
                      +|+..    ++.++++.|++..........         ....+....+.   ...... ............+..+ ..|
T Consensus        84 ~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~g  158 (255)
T d1oy3d_          84 LACRV----RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDG  158 (255)
T ss_dssp             HHTTT----TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC-TTS
T ss_pred             hhhcc----CchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccc-ccC
Confidence            99998    999999999886644211110         00011111111   111111 1111122222223333 489


Q ss_pred             chHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436          281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV  360 (424)
Q Consensus       281 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  360 (424)
                      .||||+|+..++.+++++|++.+.+.....+..|.||||+|++.++.+++++|+++   |++++.+|..|+||||+|+..
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~---gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTS
T ss_pred             cccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999998777788999999999999999999999998   899999999999999999999


Q ss_pred             CCcchhhhhccccchh
Q 014436          361 RPSEFNRYMSRTTHAN  376 (424)
Q Consensus       361 ~~~~~~~~LL~~~g~~  376 (424)
                      ++.+++++|++ +||+
T Consensus       236 ~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         236 PNPILARLLRA-HGAP  250 (255)
T ss_dssp             SCHHHHHHHHH-TTCC
T ss_pred             CCHHHHHHHHH-cCCC
Confidence            99999999998 7996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=264.38  Aligned_cols=265  Identities=21%  Similarity=0.233  Sum_probs=226.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      +.|+||.|+++|+.++|++|+++|++           ++.++ ..|.||||+|+..|+.+++++|++.+.... ..+..+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~d-----------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~~   72 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGAN-----------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNG   72 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCC-----------cCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-cccccc
Confidence            46999999999999999999999998           44443 479999999999999999999999998865 666678


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc---------ccccCCCC
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL---------LKVTDQYG  246 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~---------~~~~~~~~  246 (424)
                      .+|.+.|+..+..+....+++...+....+..+.++++.++..    +....+..++......         .......|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (285)
T d1wdya_          73 ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             chhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh----cchhhhhhhhhhcccccccccchhhhhhhcccC
Confidence            9999999999999999999999988888889999999999998    8999888888765432         12345678


Q ss_pred             ChHHHHHHhcCChhHHHHHhhc-cccccccccCCCchHHHHHHhc----CCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 014436          247 WTPIHYAAYHGKYWINDLLEID-QTATNIADKDRKMTALHLAAGR----GHARTVETILSLAPECFELVDNRRWNFLHYA  321 (424)
Q Consensus       247 ~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~t~l~~a~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  321 (424)
                      .||||+|+.+|+.+++++|... +...+..+. .|.++++.+...    +..+++++|++.|+++ +.++..|.||||+|
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a  226 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILA  226 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccC-CCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchh
Confidence            9999999999999977777644 444444444 666766655433    3457999999999996 78899999999999


Q ss_pred             HHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcC
Q 014436          322 VASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVND  382 (424)
Q Consensus       322 ~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~  382 (424)
                      ++.++.+++++|++..  |++++.+|..|+||||+|++.++.+++++||+ +|||+|++|.
T Consensus       227 ~~~~~~~~v~~lL~~~--g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             hhcCcHHHHHHHHHcC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            9999999999999864  88999999999999999999999999999998 8999999884

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=260.51  Aligned_cols=237  Identities=21%  Similarity=0.145  Sum_probs=184.6

Q ss_pred             hhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC
Q 014436           92 QVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA  171 (424)
Q Consensus        92 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~  171 (424)
                      ..+.+|.||||+||..|+.+++++|+++|++...        ++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~--------i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~   74 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY--------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VA   74 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG--------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CC
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc--------ccCcCCCCCCccchHHhhccccccccccccccccc-cc
Confidence            4678999999999999999999999999877432        56778899999999999999999999999999976 78


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCC----------CCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccc
Q 014436          172 NDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGP----------NGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV  241 (424)
Q Consensus       172 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~  241 (424)
                      +..|.||||+|+..++.+++++|++.+........          ...+....+.... ..........+.......++.
T Consensus        75 d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~in~  153 (255)
T d1oy3d_          75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS-QPNPENEEEPRDEDWRLQLEA  153 (255)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------CCCGGGGTTC
T ss_pred             ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHh-hcchhHHHHHHhhhcCccccc
Confidence            88999999999999999999999987754322111          0111111111100 001111122222222334577


Q ss_pred             cCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHH
Q 014436          242 TDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYA  321 (424)
Q Consensus       242 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A  321 (424)
                      ++..|.||||+|+..++.+++++|...+..........|.||||+|+..++.+++++|+++|+++ +.+|..|+||||+|
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~g~t~L~~A  232 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSA  232 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-CCCCCCCCCHHHHH
Confidence            89999999999999999999998888777777666668999999999999999999999999997 88999999999999


Q ss_pred             HHcCCccchHHhhhCCccccc
Q 014436          322 VASFQLQDLKPLLRNPFARIL  342 (424)
Q Consensus       322 ~~~~~~~~~~~ll~~~~~~~~  342 (424)
                      +..++.+++++|+++   |++
T Consensus       233 ~~~~~~~i~~~Ll~~---Ga~  250 (255)
T d1oy3d_         233 LLRPNPILARLLRAH---GAP  250 (255)
T ss_dssp             HTSSCHHHHHHHHHT---TCC
T ss_pred             HHCCCHHHHHHHHHc---CCC
Confidence            999999999999998   775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=246.74  Aligned_cols=220  Identities=23%  Similarity=0.239  Sum_probs=173.3

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCC
Q 014436           97 GDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGK  176 (424)
Q Consensus        97 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  176 (424)
                      +.+.|+.+|..|+.+.|+.++..+...          ++.+|..|+||||+|+..|+.+++++++..+.... ..+..+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~----------~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~   71 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSL----------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGW   71 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCc----------CcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccccccc
Confidence            467889999999998887777665433          67788999999999999999999999999888765 5566788


Q ss_pred             cHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhc
Q 014436          177 TPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYH  256 (424)
Q Consensus       177 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  256 (424)
                      ++++.++..++.+++++|++++++++..|..|.||||+|+.+    ++.+++++|++.+.+ ++..+.            
T Consensus        72 ~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~----~~~e~~~~Ll~~g~d-~~~~~~------------  134 (223)
T d1uoha_          72 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK----NRHEIAVMLLEGGAN-PDAKDH------------  134 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH----TCHHHHHHHHHTTCC-TTCCCT------------
T ss_pred             ccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc----CCHHHHHHHHHCCCC-CCCcCC------------
Confidence            999999999999999999999999999999999999999988    888999998887654 344444            


Q ss_pred             CChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          257 GKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                                            .|.||||+|+..++.+++++|++.+.++ +.+|..|+||||+|+..++.+++++|++.
T Consensus       135 ----------------------~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~  191 (223)
T d1uoha_         135 ----------------------YEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQ  191 (223)
T ss_dssp             ----------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----------------------CCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHC
Confidence                                  4445666666666666677777777664 66777777788877777777777777776


Q ss_pred             CccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          337 PFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       337 ~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                         |++++.+|..|+||||+|. .|+.+++++||+
T Consensus       192 ---Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         192 ---GASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             ---TCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             ---CCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence               7777777778888887764 577777777664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=244.90  Aligned_cols=217  Identities=20%  Similarity=0.242  Sum_probs=183.6

Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccc
Q 014436          141 KNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFD  220 (424)
Q Consensus       141 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~  220 (424)
                      +.+.|+.++..|+.+.++.++..++.....+|..|+||||+|+..|+.+++++|++.+.+....+..+.++++.++..  
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA--   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH--
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc--
Confidence            357788888888888887777776655667888888888888888888888888888888887777888888888887  


Q ss_pred             cCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHH
Q 014436          221 FKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETIL  300 (424)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll  300 (424)
                        ++.+++++|++.+.. ++..                                 + ..|.||||+|+..++.+++++|+
T Consensus        81 --~~~~i~~~Ll~~~~d-~~~~---------------------------------d-~~g~tpL~~A~~~~~~e~~~~Ll  123 (223)
T d1uoha_          81 --GRDEIVKALLGKGAQ-VNAV---------------------------------N-QNGCTPLHYAASKNRHEIAVMLL  123 (223)
T ss_dssp             --TCHHHHHHHHHTTCC-TTCC---------------------------------C-TTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             --cccchhHHHhccCce-eEee---------------------------------C-CCCCchhhHHHHcCCHHHHHHHH
Confidence              888888888876543 2222                                 2 26678888888888899999999


Q ss_pred             hhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhh
Q 014436          301 SLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAV  380 (424)
Q Consensus       301 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~  380 (424)
                      +.|.++ +.++..|.||||+|+..+..++++.|++.   +.+++.+|..|+||||+|+..++.+++++||+ +|++++.+
T Consensus       124 ~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~---~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~  198 (223)
T d1uoha_         124 EGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIE  198 (223)
T ss_dssp             HTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCC
T ss_pred             HCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccc---cceeeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCC
Confidence            999986 88999999999999999999999999988   88999999999999999999999999999997 79999999


Q ss_pred             cCCCCchhhHHhhcCchhhHHHH
Q 014436          381 NDQNVSVGHIMKYGYPELLVINL  403 (424)
Q Consensus       381 ~~~g~t~l~~a~~~~~~~~~~~~  403 (424)
                      |..|+||||+|+.  ++..+++.
T Consensus       199 d~~g~tpl~~A~~--~~~~i~~~  219 (223)
T d1uoha_         199 NKEEKTPLQVAKG--GLGLILKR  219 (223)
T ss_dssp             CTTSCCHHHHCCT--THHHHHHH
T ss_pred             CCCCCCHHHHHHC--CCHHHHhc
Confidence            9999999999963  56666663

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.5e-36  Score=262.63  Aligned_cols=253  Identities=17%  Similarity=0.159  Sum_probs=198.3

Q ss_pred             CcHHHHHHH-cCcHHHHHHHHHhchhcccchHHHHHHHHHhc-CCCCcHHHHHHhCCCHHHHHHH--------hhcCCCC
Q 014436           98 DTPLHVAAK-FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVN-NKKNTALHDAMFPGNMEVVKIL--------TREDPDY  167 (424)
Q Consensus        98 ~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~A~~~~~~~~v~~L--------l~~~~~~  167 (424)
                      .||||+|+. .|+.++++.|.+.+.+             ..+ .+|+||||+|+..|+.+++++|        ++.|+++
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n-------------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv   67 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN-------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV   67 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT-------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC-------------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc
Confidence            478886655 5666777777777654             333 4699999999999999888776        5668887


Q ss_pred             CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC--CcccccCCC
Q 014436          168 PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK--SLLKVTDQY  245 (424)
Q Consensus       168 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~--~~~~~~~~~  245 (424)
                      + .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..    ++.+++..+.....  ..+...+..
T Consensus        68 n-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~----~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          68 N-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN----RDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT----TCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             c-ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh----cchhhhhhhhhcccccccccccccc
Confidence            7 7889999999999999999999999999999999999999999999998    89898888876542  224566778


Q ss_pred             CChHHHHHHhcCChh---HHHHHhhccccc-------cccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCC
Q 014436          246 GWTPIHYAAYHGKYW---INDLLEIDQTAT-------NIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRW  315 (424)
Q Consensus       246 ~~t~l~~a~~~~~~~---~~~~l~~~~~~~-------~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  315 (424)
                      +.++.+.+...+...   ...++.......       .......|.||||.++..++.+.+++++.......+.+|..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence            889999988887655   222222221111       1122246788888888888888888777665555577888888


Q ss_pred             cHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          316 NFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       316 t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      ||||+|++.|+.+++++|++.   |++++.+|..|+||||+|++.|+.++++.|++
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~---gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            899988888888888888887   88888888888899999888888888887765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-35  Score=246.85  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=146.6

Q ss_pred             CcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC---CCCCCCCcHHHHHHHc
Q 014436          142 NTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLS---HEGPNGKTALHAAVMY  218 (424)
Q Consensus       142 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~t~L~~a~~~  218 (424)
                      +||||+||..|+.++++.|++.++.....+|.+|+||||+|+..|+.+++++|+++|++++   ..+..|.+++++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4789999999999999888887655555788889999999999999999999999888876   3455677777777777


Q ss_pred             cccCCcHHHHHHHHhhcCCc-ccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436          219 FDFKGDHHAMRQLFGRKKSL-LKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVE  297 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~  297 (424)
                          +..++++.++..+... ....+.                                  .+.++++.++..++.++++
T Consensus        81 ----~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~l~~~~~~~~~~~~~  122 (229)
T d1ixva_          81 ----GNLEVVKSLYDRPLKPDLNKITN----------------------------------QGVTCLHLAVGKKWFEVSQ  122 (229)
T ss_dssp             ----TCHHHHHHHHSSSSCCCTTCCCT----------------------------------TSCCHHHHHHHTTCHHHHH
T ss_pred             ----ccccccccccccccccccccccc----------------------------------ccccccccccccchhhhhh
Confidence                7777777666554321 112222                                  4456666666666666666


Q ss_pred             HHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhh
Q 014436          298 TILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANY  377 (424)
Q Consensus       298 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~  377 (424)
                      +|+..+... +..+..|+||||+|+..++.++++.|++..  +.+++.+|..|+||||+|++.++.+++++||++.|+++
T Consensus       123 ~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~--~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~  199 (229)
T d1ixva_         123 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  199 (229)
T ss_dssp             HHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTT--CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             hhhhhcccc-cccCCCCCCccchhhhcccccccccccccc--cccccccccccCCchhhhcccccHHHHHHHHHhcCCCC
Confidence            666666654 556666666777766666666666666652  35566666667777777777777777766666556677


Q ss_pred             hhhcCCCCchhhHHh
Q 014436          378 QAVNDQNVSVGHIMK  392 (424)
Q Consensus       378 ~~~~~~g~t~l~~a~  392 (424)
                      +.+|..|+||||+|.
T Consensus       200 ~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         200 DLVDNKGAKAEDVAL  214 (229)
T ss_dssp             CCCCTTSCCTGGGCS
T ss_pred             CCcCCCCCCHHHHHh
Confidence            777767777777665

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.9e-35  Score=258.90  Aligned_cols=237  Identities=21%  Similarity=0.169  Sum_probs=185.1

Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCC
Q 014436           95 AKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDY  174 (424)
Q Consensus        95 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  174 (424)
                      ..+.|+|+.||..|+.++|++|+++|++           ++..|.+|.||||+|+..|+.+++++|++++.+.. ..+..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-----------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~~~  105 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD-----------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNE  105 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC-----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC-----------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-ccccc
Confidence            3456999999999999999999999998           67889999999999999999999999999998865 66778


Q ss_pred             CCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHH
Q 014436          175 GKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA  254 (424)
Q Consensus       175 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  254 (424)
                      +.+||+.|+..++.++++.|+++|+..+..+..+.+++++|+..    +..+.+..++.............+.       
T Consensus       106 ~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~ll~~~~~~~~~~~~~~~-------  174 (291)
T d1s70b_         106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE----AMEELLQNEVNRQGVDIEAARKEEE-------  174 (291)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH----HHHHHHHHHHHHHTCCHHHHHHHHH-------
T ss_pred             ccccccccccccccchhhcccccCcccccccccCcccccccccc----ccchhcccccccccccccccccccc-------
Confidence            99999999999999999999999999999999999999999887    8888888888655432111000000       


Q ss_pred             hcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhh
Q 014436          255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLL  334 (424)
Q Consensus       255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  334 (424)
                                                 .+..       ......+...... ....+..|.||||+|+..++.++++.|+
T Consensus       175 ---------------------------~~~~-------~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  219 (291)
T d1s70b_         175 ---------------------------RIML-------RDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLI  219 (291)
T ss_dssp             ---------------------------HHHH-------HHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---------------------------cccc-------ccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhcccc
Confidence                                       0000       0111111111212 2445667788888888888888888888


Q ss_pred             hCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhh
Q 014436          335 RNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKY  393 (424)
Q Consensus       335 ~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~  393 (424)
                      +.   |++++.++..|+||||+|++.|+.+++++||+ +|+|++.+|+.|+||||+|++
T Consensus       220 ~~---g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         220 QA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred             cc---eecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence            76   77788888888888888888888888888876 788888888888888888864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=246.99  Aligned_cols=267  Identities=19%  Similarity=0.171  Sum_probs=146.2

Q ss_pred             CHHHHHHHHcCCCchhHHHHHHHHHHh-hccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHH
Q 014436           26 DPKLLKAAADGNAEPFKDMAREVIESL-LTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVA  104 (424)
Q Consensus        26 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  104 (424)
                      +++|+.|++.|++++|++|++.|++.+ ..+..|+||||+|  +..|+.+++++|++.    +......+..+.+|.+.|
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~~----~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHH--HHcCCHHHhhhhccc----cccccccccccchhhHHH
Confidence            355666666666666666666665554 2333455555555  555555555555543    333444444555555555


Q ss_pred             HHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCC---------CCCC
Q 014436          105 AKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSA---------NDYG  175 (424)
Q Consensus       105 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------~~~g  175 (424)
                      +..+..+...+++++..+           ....+..+.++++.|+..+....++.++....+.....         ...|
T Consensus        80 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGAD-----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCC-----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             hhcCCccccchhhhhccc-----------ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccC
Confidence            555555555555555433           12234455555555555555555555555444432111         1134


Q ss_pred             CcHHHHHHhcCChHHHHHHHHh-CCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHH
Q 014436          176 KTPLYMAAESESSDMVLTLLEN-CTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAA  254 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~  254 (424)
                      .||||+|+++|+.+++++|+++ |++++..+..+.+++..+..........+++++|+                      
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li----------------------  206 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL----------------------  206 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH----------------------
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHH----------------------
Confidence            5555555555555555555543 34555555555554444443322222333444444                      


Q ss_pred             hcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh-CCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436          255 YHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL-APECFELVDNRRWNFLHYAVASFQLQDLKPL  333 (424)
Q Consensus       255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  333 (424)
                                  +.+...+..+. .|.||||.|+..++.+++++|++. |.++ +.+|..|.||||+|++.++.+++++|
T Consensus       207 ------------~~ga~~n~~~~-~g~t~L~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         207 ------------DHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             ------------HTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ------------HCCCCCCccCC-CCCCccchhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                        44443333333 566777777777777777777764 4454 66777777777777777777777777


Q ss_pred             hhCCccccccccccC
Q 014436          334 LRNPFARILINEGDA  348 (424)
Q Consensus       334 l~~~~~~~~i~~~d~  348 (424)
                      ++.   |+++|.+|.
T Consensus       273 l~~---GAd~n~~d~  284 (285)
T d1wdya_         273 CKR---GASTDCGDL  284 (285)
T ss_dssp             HHH---SSCSCCSSC
T ss_pred             HHC---CCCCCcccC
Confidence            776   777777663

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.6e-34  Score=250.69  Aligned_cols=214  Identities=19%  Similarity=0.148  Sum_probs=153.2

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF  219 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~  219 (424)
                      ++.|+|+.||..|+.++|++|+++|++++ ..+..|.||||+|+..|+.++|++|++++.+....+..+.+||+.++.. 
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-  116 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-  116 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-
Confidence            45588888888888888888888888866 6788888888888888888888888888888888888888888888888 


Q ss_pred             ccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHH
Q 014436          220 DFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETI  299 (424)
Q Consensus       220 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~L  299 (424)
                         ++.++++.|+..+.. ....+..+.+++++|+..+                                  ..+.++.+
T Consensus       117 ---~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~----------------------------------~~~~~~~l  158 (291)
T d1s70b_         117 ---GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEA----------------------------------MEELLQNE  158 (291)
T ss_dssp             ---TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHH----------------------------------HHHHHHHH
T ss_pred             ---cccchhhcccccCcc-cccccccCccccccccccc----------------------------------cchhcccc
Confidence               888888888877654 3455555555555554444                                  44444444


Q ss_pred             HhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhh
Q 014436          300 LSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQA  379 (424)
Q Consensus       300 l~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~  379 (424)
                      +.............+..+.+.       .....+...   ..+....+..|.||||+|+..++.++++.|+. .|++++.
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~  227 (291)
T d1s70b_         159 VNRQGVDIEAARKEEERIMLR-------DARQWLNSG---HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNI  227 (291)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHH-------HHHHHHHHT---CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTC
T ss_pred             ccccccccccccccccccccc-------cchhhhccc---ccccccccCCCCChhhHHHHcCChhhhccccc-ceecccc
Confidence            432221111111111111111       111222222   44456677899999999999999999999998 8999999


Q ss_pred             hcCCCCchhhHHhhcCchhhHHHHHH
Q 014436          380 VNDQNVSVGHIMKYGYPELLVINLSI  405 (424)
Q Consensus       380 ~~~~g~t~l~~a~~~~~~~~~~~~~~  405 (424)
                      ++..|+||||+|+. +++.+++++.+
T Consensus       228 ~~~~g~TpL~~A~~-~g~~~iv~lLl  252 (291)
T d1s70b_         228 KDYDGWTPLHAAAH-WGKEEACRILV  252 (291)
T ss_dssp             CCTTCCCHHHHHHH-TTCHHHHHHHH
T ss_pred             cccCCCCHHHHHHH-cCCHHHHHHHH
Confidence            99999999999986 58888887544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1e-34  Score=252.29  Aligned_cols=256  Identities=18%  Similarity=0.160  Sum_probs=200.9

Q ss_pred             CcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhc-cCCCcHHHHHHHcCcHHHHHHHHH--------hchhcccchHH
Q 014436           59 NTILHINIMCQDAENASTKFVEEILEICPALLIQVN-AKGDTPLHVAAKFGHSDIVRVLID--------RAKLAQDGDEA  129 (424)
Q Consensus        59 ~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~--------~~~~~~~~~~~  129 (424)
                      .||||+++ ...|..++.+.|.+.      .++..+ ..|+||||+||..|+.++|+.|+.        +|++       
T Consensus         1 ~~p~~~~~-~~~~~~~~~~~l~~~------~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-------   66 (277)
T d2fo1e1           1 ESPIKLHT-EAAGSYAITEPITRE------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-------   66 (277)
T ss_dssp             CCCCHHHH-HHHSSSCCCSCCSTT------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-------
T ss_pred             CChHHHHH-HhCCCHHHHHHHHhc------CCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-------
Confidence            48999773 334555555554442      233444 458999999999999988887754        4555       


Q ss_pred             HHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhC---CCCCCCCC
Q 014436          130 ARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENC---TSLSHEGP  206 (424)
Q Consensus       130 ~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~  206 (424)
                          ++.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+..++.++++.+...+   ..++..+.
T Consensus        67 ----vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~  141 (277)
T d2fo1e1          67 ----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  141 (277)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             ----ccccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhccccccccccccc
Confidence                67889999999999999999999999999999976 77889999999999999999999988765   45667788


Q ss_pred             CCCcHHHHHHHccccCCcHHHHHHHHhhcCC-------cccccCCCCChHHHHHHhcCChhHHHH-HhhccccccccccC
Q 014436          207 NGKTALHAAVMYFDFKGDHHAMRQLFGRKKS-------LLKVTDQYGWTPIHYAAYHGKYWINDL-LEIDQTATNIADKD  278 (424)
Q Consensus       207 ~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~~~~~-l~~~~~~~~~~~~~  278 (424)
                      .+.++.+.+..... ......+..+......       .....+..|.||||+++..++.++..+ +...+......+ .
T Consensus       142 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d-~  219 (277)
T d2fo1e1         142 NGMTALMIVAHNEG-RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD-E  219 (277)
T ss_dssp             TSCCHHHHHHHSCS-TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC-T
T ss_pred             ccchhHHHHHhccc-ccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccC-C
Confidence            89999999887621 1223344444433221       134566789999999999999986665 444555544444 4


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhC
Q 014436          279 RKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRN  336 (424)
Q Consensus       279 ~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  336 (424)
                      .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+++|+.+++++|++.
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            8999999999999999999999999997 88999999999999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-33  Score=234.94  Aligned_cols=224  Identities=24%  Similarity=0.256  Sum_probs=131.9

Q ss_pred             cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC
Q 014436           60 TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN  139 (424)
Q Consensus        60 t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~  139 (424)
                      +|||+|  +.+|+.++++.|++.   .+..++.+|.+|.||||+|+..|+.+++++|+++|++++.        .+..+.
T Consensus         2 ~pLh~A--~~~g~~~~v~~Ll~~---~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~--------~~~~~~   68 (229)
T d1ixva_           2 YPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL--------DDYPDD   68 (229)
T ss_dssp             CHHHHH--HHHTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCG--------GGCCCT
T ss_pred             HhHHHH--HHcCCHHHHHHHHHc---CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccc--------cccccc
Confidence            566666  666666666666554   3555666666677777777777777777777776665331        123455


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCC-CCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDY-PYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMY  218 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~  218 (424)
                      .|.+|+|+++..+..++++.++..+... ....+..+.|+++.++..++.++++.|++.+.+....+..|+||||+|+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~  148 (229)
T d1ixva_          69 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV  148 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhc
Confidence            6666777776666666666666655432 223444566667776666666777777666666666666666666666666


Q ss_pred             cccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhh-ccccccccccCCCchHHHHHHhcCCHHHHH
Q 014436          219 FDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI-DQTATNIADKDRKMTALHLAAGRGHARTVE  297 (424)
Q Consensus       219 ~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~  297 (424)
                          ++.++++.|+..+...++.+|..|+||||+|+..|+.+++++|.. .+...+..+. .|.||||+|+.   .++++
T Consensus       149 ----~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~-~g~t~l~~A~~---~~~~~  220 (229)
T d1ixva_         149 ----GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN---EQVKK  220 (229)
T ss_dssp             ----TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCT-TSCCTGGGCSC---HHHHH
T ss_pred             ----ccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCC-CCCCHHHHHhh---HHHHH
Confidence                666666666666554455555555555555555555554444432 2333333332 44555555442   24445


Q ss_pred             HHHhhCC
Q 014436          298 TILSLAP  304 (424)
Q Consensus       298 ~Ll~~~~  304 (424)
                      +|+++|+
T Consensus       221 ~Ll~~g~  227 (229)
T d1ixva_         221 FFLNNVV  227 (229)
T ss_dssp             HHHHHCC
T ss_pred             HHHHcCC
Confidence            5555444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=222.36  Aligned_cols=221  Identities=21%  Similarity=0.177  Sum_probs=161.4

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhh----cCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 014436          140 KKNTALHDAMFPGNMEVVKILTR----EDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA  215 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a  215 (424)
                      +|.||||+||..|+.++++.|++    .|.+++ ..|..|+||||+|+..|+.+++++|+++|++.+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            68899999999999998888874    577765 6778889999999999999999999999988888888888888888


Q ss_pred             HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHH
Q 014436          216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  295 (424)
                      ...    .+.++++.+...........                              . .......++++.+........
T Consensus        81 ~~~----~~~~~~~~~~~~~~~~~~~~------------------------------~-~~~~~~~~~l~~~~~~~~~~~  125 (228)
T d1k1aa_          81 CEH----RSPTCLRALLDSAAPGTLDL------------------------------E-ARNYDGLTALHVAVNTECQET  125 (228)
T ss_dssp             HHT----TCHHHHHHHHHHSCTTSCCT------------------------------T-CCCTTSCCHHHHHHHHTCHHH
T ss_pred             ccc----ccccchhhhhhccccccccc------------------------------c-ccccccccccccccccccchh
Confidence            887    77777776665432211000                              0 011133466666666666667


Q ss_pred             HHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccch
Q 014436          296 VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHA  375 (424)
Q Consensus       296 v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~  375 (424)
                      .+.+.....+........|.++++.|+..+...+++.+++.   +..++.+|..|+||||+|+..|+.+++++|++ +|+
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Ga  201 (228)
T d1k1aa_         126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGA  201 (228)
T ss_dssp             HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTC
T ss_pred             hhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh---ccccccccccCcchHHHHHHcCCHHHHHHHHH-CCC
Confidence            77776666665555666777777777777777777777776   66677777777777777777777777777776 677


Q ss_pred             hhhhhcCCCCchhhHHhhcCchhhHH
Q 014436          376 NYQAVNDQNVSVGHIMKYGYPELLVI  401 (424)
Q Consensus       376 ~~~~~~~~g~t~l~~a~~~~~~~~~~  401 (424)
                      |++.+|..|+||||+|++ +++++++
T Consensus       202 d~n~~d~~G~TpL~~A~~-~~~~div  226 (228)
T d1k1aa_         202 DSSLKNCHNDTPLMVARS-RRVIDIL  226 (228)
T ss_dssp             CTTCCCTTSCCTTTTCSS-HHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHh-CCCcccc
Confidence            777777777788777764 3555554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=217.54  Aligned_cols=192  Identities=20%  Similarity=0.094  Sum_probs=146.8

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHH----hCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChH
Q 014436          174 YGKTPLYMAAESESSDMVLTLLE----NCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTP  249 (424)
Q Consensus       174 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~  249 (424)
                      +|.||||+|+..|+.++++.|++    .|++++.+|..|+||||+|+..    ++.++++.|++.++. .+..+..+.++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~----~~~~iv~~Ll~~ga~-~~~~~~~~~~~   76 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT----TLPSVVRLLVTAGAS-PMALDRHGQTA   76 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc----ccccccccccccccc-ccccccccccc
Confidence            59999999999999999888875    7889999999999999999998    999999999987765 35555566666


Q ss_pred             HHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccc
Q 014436          250 IHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQD  329 (424)
Q Consensus       250 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~  329 (424)
                      ++.|...+...+.+........                               .....+.......++++.+........
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~  125 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAP-------------------------------GTLDLEARNYDGLTALHVAVNTECQET  125 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCT-------------------------------TSCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             cccccccccccchhhhhhcccc-------------------------------ccccccccccccccccccccccccchh
Confidence            6666655554433333221111                               111123345667899999999999988


Q ss_pred             hHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHhhcCchhhHHHHHH
Q 014436          330 LKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMKYGYPELLVINLSI  405 (424)
Q Consensus       330 ~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  405 (424)
                      .+.+....  .......+..|.+||+.|+..+..++++.++. +|.+++.+|..|.||+++|+.. ++...+++.+
T Consensus       126 ~~~l~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll  197 (228)
T d1k1aa_         126 VQLLLERG--ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGR-GLLPLVRTLV  197 (228)
T ss_dssp             HHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHH
T ss_pred             hhhhhccc--cccccccccchhhHHHHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHHHc-CCHHHHHHHH
Confidence            88888763  22344556789999999999999999999988 8999999999999999999864 7777777444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.8e-30  Score=215.41  Aligned_cols=207  Identities=23%  Similarity=0.212  Sum_probs=160.7

Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHh
Q 014436          154 MEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG  233 (424)
Q Consensus       154 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~  233 (424)
                      .|+|++|+++|++++...|.+|.||||+|+.+|+.+++++|++.|++++.++..+.++++.++..    ...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~----~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA----DAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc----ccccccccccc
Confidence            58999999999997755688899999999999999999999999999999999999999999987    77666666655


Q ss_pred             hcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCC
Q 014436          234 RKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNR  313 (424)
Q Consensus       234 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~  313 (424)
                      ............+.++.+.+.........+.+...+......+. .|.|||+.++..+..++++.+++.+.++ +..|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~  155 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN-SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDK  155 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCC-CCCCcchhhcccCcceeeeeeccccccc-cccccc
Confidence            55444455566677777777777766666666665555444444 6777888888778888888777777775 667777


Q ss_pred             CCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhh
Q 014436          314 RWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYM  369 (424)
Q Consensus       314 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~L  369 (424)
                      |.||||+|+..|+.+++++|++.   |++++.+|..|+||||+|++.|+.++|++|
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            78888888888888888888776   777777777788888888888887777654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=222.57  Aligned_cols=197  Identities=18%  Similarity=0.148  Sum_probs=132.3

Q ss_pred             CCHHHHHHHHcCCCchhHHHH----HHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcH
Q 014436           25 TDPKLLKAAADGNAEPFKDMA----REVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTP  100 (424)
Q Consensus        25 ~~~~l~~A~~~g~~~~v~~ll----~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  100 (424)
                      |.||||+|+..|+.++++.++    ..|.+++..+.+|.||||+|  +..|+.+++++|++.    +.+++..|..|.||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A--~~~~~~~iv~~L~~~----g~d~~~~d~~g~t~   75 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA--VITNQPEIAEALLGA----GCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH--HHTTCHHHHHCCCSC----CCCSCCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccc--ccccccccccccccc----cccccccccccccc
Confidence            566777777777754444433    34444445666777777777  777777777776654    55666677777777


Q ss_pred             HHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHH
Q 014436          101 LHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLY  180 (424)
Q Consensus       101 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~  180 (424)
                      ||.|+..|+.++++.|++.+........     .......|.||||.|+..++.+++++|+..+..++...+.+|.||||
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~  150 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSI-----LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH  150 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCG-----GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             cccccccccccccchhhhhccccccccc-----ccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccc
Confidence            7777777777777777776654332211     22334456777777777777777777777777766555666777777


Q ss_pred             HHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcC
Q 014436          181 MAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKK  236 (424)
Q Consensus       181 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~  236 (424)
                      +|+..|+.+++++|+++|+|++.+|..|.||||+|+..    ++.+++++|++...
T Consensus       151 ~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~----~~~~~~~~l~~~~~  202 (221)
T d1iknd_         151 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS----SCHHHHHHHHTTSC
T ss_pred             cccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHC----CCHHHHHHHHHcCC
Confidence            77777777777777777777777777777777777776    77777777766543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=218.20  Aligned_cols=195  Identities=19%  Similarity=0.157  Sum_probs=155.6

Q ss_pred             CCCcHHHHHHhCCCHHH----HHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 014436          140 KKNTALHDAMFPGNMEV----VKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAA  215 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a  215 (424)
                      +|.||||+|+..|+.++    ++++...+.+++ .+|.+|+||||+|+..|+.+++++|++.|++++.+|..|.|||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            58899999999988644    445556677766 7788899999999999999999999999999999999999999999


Q ss_pred             HHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHH
Q 014436          216 VMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHART  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  295 (424)
                      +..    +..++++.++..+......                             .........|.||+|.|+..++.+.
T Consensus        80 ~~~----~~~~~~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~t~l~~a~~~~~~~~  126 (221)
T d1iknd_          80 CEQ----GCLASVGVLTQSCTTPHLH-----------------------------SILKATNYNGHTCLHLASIHGYLGI  126 (221)
T ss_dssp             HHH----TCHHHHHHHHHSTTTTSSS-----------------------------CGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccc----ccccccchhhhhccccccc-----------------------------ccccccccccchhhhHHhhcCChhh
Confidence            998    8889988888765332000                             0011122357789999999999999


Q ss_pred             HHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhcc
Q 014436          296 VETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSR  371 (424)
Q Consensus       296 v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~  371 (424)
                      +++++..|+.+....+..|.||||+|++.|+.+++++|++.   |++++.+|..|+||||+|++.++.+++++|++
T Consensus       127 ~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~---gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             eeeecccCcccccccccCCCCccccccccccHHHHHHHHhc---CCcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999888887655667789999999999999999999987   88899999999999999999999999988876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.2e-28  Score=201.63  Aligned_cols=205  Identities=20%  Similarity=0.247  Sum_probs=179.8

Q ss_pred             HHHHHHHHHhchhcccchHHHHHHHHH-hcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCCh
Q 014436          110 SDIVRVLIDRAKLAQDGDEAARQMIRM-VNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESS  188 (424)
Q Consensus       110 ~~~v~~Ll~~~~~~~~~~~~~~~~i~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  188 (424)
                      .|+|++|+++|++           ++. .|.+|.||||+||..|+.+++++|++.|++++ ..+..+.++++.++..++.
T Consensus         2 ~~~v~~Ll~~g~d-----------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~   69 (209)
T d1ot8a_           2 AQVISDLLAQGAE-----------LNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAM   69 (209)
T ss_dssp             HHHHHHHHHHHHH-----------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCC-----------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-ccccccccccccccccccc
Confidence            5899999999998           765 58999999999999999999999999999976 7788899999999999998


Q ss_pred             HHHHHHHHhCC-CCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhh
Q 014436          189 DMVLTLLENCT-SLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEI  267 (424)
Q Consensus       189 ~~v~~Ll~~~~-~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  267 (424)
                      ........... ........+.++.+.+...    ......+.|...+.. ++..+..|.||++.++..+...+...+..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~  144 (209)
T d1ot8a_          70 GVFQILLRNRATNLNARMHDGTTPLILAARL----AIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLM  144 (209)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT----TCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccc----cchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecc
Confidence            88777666553 3344556788888888887    777888888877665 57889999999999999999998888888


Q ss_pred             ccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHh
Q 014436          268 DQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPL  333 (424)
Q Consensus       268 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  333 (424)
                      .....+..+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+++|+.++|++|
T Consensus       145 ~~~~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~gad~-n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         145 HHANRDAQDD-KDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccc-ccccccchhccccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            8777777766 8999999999999999999999999996 78999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=8e-31  Score=233.49  Aligned_cols=269  Identities=12%  Similarity=0.016  Sum_probs=193.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHH---HhhcCCCCCCCCCCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKI---LTREDPDYPYSANDYG  175 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~g  175 (424)
                      ++++.+...+..++.+.+...+.............++.++..|.||||+|+.+|+.+++++   |++.|++++ ..+..|
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g  126 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAEN  126 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCC
Confidence            3344444455567788888777766655444455578899999999999999999887765   788899877 678889


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCC--CCCCcHHHHHHHccccCCcHHHHHHHHhhcCCc--ccccCCCCChHHH
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEG--PNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSL--LKVTDQYGWTPIH  251 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~t~l~  251 (424)
                      .||||+|+.+|+.++|++|+++|++++..+  ..|.||||+|+..    |+.+++++|++.++..  .+..+..+.||++
T Consensus       127 ~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~----g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~  202 (346)
T d2ajaa1         127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN----GHLHVLNRLCELAPTEATAMIQAENYYAFRW  202 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT----TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH----hhHHHHHHHHHcCCcccccccccCCCcchhh
Confidence            999999999999999999999999988765  4689999999999    9999999999987643  2334455678888


Q ss_pred             HHHhcCChhHHHHHhhccccccccc------cCCCchHHHHHHhcCCHHHHHHHHhhCCCc-ccccc-------CCCCcH
Q 014436          252 YAAYHGKYWINDLLEIDQTATNIAD------KDRKMTALHLAAGRGHARTVETILSLAPEC-FELVD-------NRRWNF  317 (424)
Q Consensus       252 ~a~~~~~~~~~~~l~~~~~~~~~~~------~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~-------~~g~t~  317 (424)
                      .|+..|+.+++++|.+.+.......      ...+.++++.+...+..+....+.....+. .+..+       ..+.++
T Consensus       203 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  282 (346)
T d2ajaa1         203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN  282 (346)
T ss_dssp             HHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhH
Confidence            8999999999999887654432211      123345565555544444443333322221 01111       123467


Q ss_pred             HHHHHHcCCccchHHhhhCCcc--ccccccccCCCCcHHHHHHhcCCcchhhhhccc
Q 014436          318 LHYAVASFQLQDLKPLLRNPFA--RILINEGDAKGNTPLHVFAAVRPSEFNRYMSRT  372 (424)
Q Consensus       318 l~~A~~~~~~~~~~~ll~~~~~--~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~  372 (424)
                      ++.|+..+..+++++|++.+..  ....+..+.+|+||||+|++.|+.+++++||.-
T Consensus       283 l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            8888888999999999987432  223445556899999999999999999999873

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.2e-29  Score=225.88  Aligned_cols=234  Identities=15%  Similarity=0.088  Sum_probs=145.2

Q ss_pred             hhhhhccCCCcHHHHHHHcCcHHHHHH---HHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCC
Q 014436           89 LLIQVNAKGDTPLHVAAKFGHSDIVRV---LIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDP  165 (424)
Q Consensus        89 ~~~~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  165 (424)
                      .++.++..|.||||+||.+|+.+++++   |++.|++           ++.+|.+|.||||+|+.+|+.++|++|++.|+
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-----------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-----------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            345566677777777777777665554   6677766           55666677777777777777777777777777


Q ss_pred             CCCCC-CCCCCCcHHHHHHhcCChHHHHHHHHhCCCCC---CCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcc--
Q 014436          166 DYPYS-ANDYGKTPLYMAAESESSDMVLTLLENCTSLS---HEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLL--  239 (424)
Q Consensus       166 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~--  239 (424)
                      +++.. .+..|.||||+|+.+|+.++|++|++.|++..   ..+..+.||++.|+..    |+.+++++|++.++..-  
T Consensus       151 ~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~----g~~~iv~~Ll~~ga~~~~~  226 (346)
T d2ajaa1         151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR----GHHNVINFLLDCPVMLAYA  226 (346)
T ss_dssp             TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT----CCHHHHHHHTTSHHHHHHH
T ss_pred             CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc----CHHHHHHHHHhCCCCcchH
Confidence            65422 12347777777777777777777777775432   2334455666777766    77777777776654310  


Q ss_pred             ----cccCCCCChHHHHHHhcCChhHHHHHhhcccc--ccccc------cCCCchHHHHHHhcCCHHHHHHHHhhCCCcc
Q 014436          240 ----KVTDQYGWTPIHYAAYHGKYWINDLLEIDQTA--TNIAD------KDRKMTALHLAAGRGHARTVETILSLAPECF  307 (424)
Q Consensus       240 ----~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~--~~~~~------~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~  307 (424)
                          ......+.++++.+...+..+....+......  .....      ...+.++++.++..+..+++++|++.+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~  306 (346)
T d2ajaa1         227 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA  306 (346)
T ss_dssp             HHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG
T ss_pred             HHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhh
Confidence                01112233444444333322222222111110  00000      0123578889999999999999998876431


Q ss_pred             ----ccccCCCCcHHHHHHHcCCccchHHhhhCC
Q 014436          308 ----ELVDNRRWNFLHYAVASFQLQDLKPLLRNP  337 (424)
Q Consensus       308 ----~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~  337 (424)
                          ...+..|+||||+|++.|+.+++++|++.+
T Consensus       307 ~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         307 LAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             GSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence                233457899999999999999999999863

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.1e-28  Score=189.31  Aligned_cols=154  Identities=20%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHH
Q 014436           27 PKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAK  106 (424)
Q Consensus        27 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  106 (424)
                      ++||+||..|++++|++|++.|++++..+..|.||||+|  + .++.+++++|++.    +..++..+..+.+|++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--K-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccc--c-ccccccccccccc----ccccccccccCccccccccc
Confidence            567777777777777777777776666666677777765  4 4666666666654    55566666667777777777


Q ss_pred             cCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcC
Q 014436          107 FGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESE  186 (424)
Q Consensus       107 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  186 (424)
                      .++.+.++.|++.+..           ++..+..|.+|+|+|+..++.+++++|+++++.....++..|.||||+|+..+
T Consensus        76 ~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          76 AGFLDTLQTLLEFQAD-----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HTCHHHHHHHHHTTCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            7777777777766665           44556666777777777777777777776666434466666777777777777


Q ss_pred             ChHHHHHHHHhC
Q 014436          187 SSDMVLTLLENC  198 (424)
Q Consensus       187 ~~~~v~~Ll~~~  198 (424)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            777777776665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-26  Score=180.33  Aligned_cols=153  Identities=22%  Similarity=0.191  Sum_probs=127.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      +|||+||..|+.++|++|+++|++           ++.+|.+|.||||+|+ .|+.+++++|+++++++. ..+..|.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-----------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~   69 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-----------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAV   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-----------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----------cCccCCcccccccccc-cccccccccccccccccc-cccccCccc
Confidence            788999999999999999998888           5677888899998775 678899999998888865 667778889


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCC
Q 014436          179 LYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGK  258 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~  258 (424)
                      ++.++..+..++++.|++.+.+++..+..|.+|+++|+..    ++.++++.|+++++.+.+.++..|.||||+|+..++
T Consensus        70 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          70 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE----GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999988888888888888999988888    888888888888876667777777777777777777


Q ss_pred             hhHHHHHhhc
Q 014436          259 YWINDLLEID  268 (424)
Q Consensus       259 ~~~~~~l~~~  268 (424)
                      .+++++|.+.
T Consensus       146 ~~iv~~Ll~~  155 (156)
T d1ihba_         146 NEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            7777766543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.9e-27  Score=207.92  Aligned_cols=210  Identities=15%  Similarity=0.059  Sum_probs=136.7

Q ss_pred             HHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcccc--CCc-HHHHHHHH
Q 014436          156 VVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDF--KGD-HHAMRQLF  232 (424)
Q Consensus       156 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~--~~~-~~~~~~Ll  232 (424)
                      +...+...+.+++...|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||.|+...+.  .+. .++++.+.
T Consensus        88 ~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            333333445566655588999999999999999999999999999999999999999999986110  011 23334333


Q ss_pred             hhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhhCCCccccccC
Q 014436          233 GRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSLAPECFELVDN  312 (424)
Q Consensus       233 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~  312 (424)
                      .    .....|..|+||||.++..+.....                      ..+++.....++.++.+.+.........
T Consensus       168 ~----~~~~~d~~g~t~lh~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~  221 (301)
T d1sw6a_         168 P----CLILEDSMNRTILHHIIITSGMTGC----------------------SAAAKYYLDILMGWIVKKQNRPIQSGTN  221 (301)
T ss_dssp             G----GGGEECTTCCCHHHHHHHHHTSTTC----------------------HHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             h----hhhhcccccCCHHHHHHHHhCcccc----------------------HHHHHHHHHHHHHHHHhcCCcchhcccc
Confidence            2    2466788899999988755432200                      0011111123456677766665555666


Q ss_pred             CCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhcCCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          313 RRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAVRPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       313 ~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      .+.++++.+........+..+......+..+|.+|..|+||||+|++.|+.+++++||+ +|++++.+|+.|+|||++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             cccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            66777776666555444333221111133478999999999999999999999999998 79999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=176.42  Aligned_cols=147  Identities=26%  Similarity=0.297  Sum_probs=71.9

Q ss_pred             HHHHHHcCcHHHHHHHHHh-chhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHH
Q 014436          101 LHVAAKFGHSDIVRVLIDR-AKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPL  179 (424)
Q Consensus       101 L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  179 (424)
                      |+.||..|+.++|++|++. +.+           ++..|..|.||||+|+. ++.+++++|++++.+++ ..+..|.+|+
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~-----------~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~-~~~~~~~~~l   72 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVH-----------PDALNRFGKTALQVMMF-GSTAIALELLKQGASPN-VQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCC-----------TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCC-----------CCccCCCCCcccccccc-ccccccccccccccccc-cccccccccc
Confidence            5555555555555555543 222           33444455555554442 44455555555555433 3344455555


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCCh
Q 014436          180 YMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKY  259 (424)
Q Consensus       180 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  259 (424)
                      +.++..++.++++.+++++++++.+|..|.||||+|+..    ++.+++++|+ .+++ ++.+|..|+||||+|+..|+.
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~----~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE----GHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH----TCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCH
T ss_pred             ccccccccccccccccccccccccccCCCCeeecccccc----cccccccccc-cccc-ccccCCCCCCHHHHHHHcCCH
Confidence            555555555555555555555555555555555555554    5555554444 2222 344455555555555555555


Q ss_pred             hHHHHHh
Q 014436          260 WINDLLE  266 (424)
Q Consensus       260 ~~~~~l~  266 (424)
                      +++++|.
T Consensus       147 ~iv~~Ll  153 (156)
T d1bd8a_         147 DLVDILQ  153 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.7e-25  Score=172.11  Aligned_cols=152  Identities=26%  Similarity=0.343  Sum_probs=132.4

Q ss_pred             cHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccC
Q 014436          143 TALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFK  222 (424)
Q Consensus       143 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~  222 (424)
                      ++|+.|+..|+.++|+.|++++.......|..|.||||+|+ .++.+++++|++++.+++..+..|.+|++.++..    
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~----   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART----   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc----
Confidence            45999999999999999998744334578889999999987 4888999999999999999999999999999998    


Q ss_pred             CcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhcCCHHHHHHHHhh
Q 014436          223 GDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGRGHARTVETILSL  302 (424)
Q Consensus       223 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~v~~Ll~~  302 (424)
                      ++.++++.+++.+.. ++.++..|.||||+|+..|+.+++++|..+ ...+..+. .|+||||+|++.|+.+++++|+++
T Consensus        79 ~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~-~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-cccccCCCCeeecccccccccccccccccc-ccccccCC-CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999998876 578899999999999999999988888754 44455554 899999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.2e-25  Score=171.99  Aligned_cols=150  Identities=21%  Similarity=0.250  Sum_probs=136.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCc
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKT  177 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  177 (424)
                      .||||.||+.|+.++|++|+++|++.           + .|..|.||||+|+..++.++++.++....... .....+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-----------~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   69 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-----------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-----------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-----------c-cccCCCcccccccccccccccccccccccccc-cccccccc
Confidence            48999999999999999999999873           2 57889999999999999999999998877755 56667889


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcC
Q 014436          178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHG  257 (424)
Q Consensus       178 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  257 (424)
                      +++.++...+.++++++..++++++.++..|.||||+|+..    ++.+++++|++.+++ ++..|..|.||||+|+.+|
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~----g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccccceeeecccccCCccccccccCchHHHhhhhc----chhheeeeccccccC-CcccCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999999    999999999998876 5888999999999999999


Q ss_pred             ChhHHHHH
Q 014436          258 KYWINDLL  265 (424)
Q Consensus       258 ~~~~~~~l  265 (424)
                      +.+++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            99988877

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.7e-25  Score=172.68  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=87.4

Q ss_pred             cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC
Q 014436           60 TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN  139 (424)
Q Consensus        60 t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~  139 (424)
                      ||||.|  ++.|+.+++++|++.    ++.++ .|..|.||||+|+..++.++++.++.....           ....+.
T Consensus         4 t~L~~A--a~~g~~~~v~~LL~~----ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~   65 (153)
T d1awcb_           4 KKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----------RDARTK   65 (153)
T ss_dssp             HHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCT
T ss_pred             HHHHHH--HHCCCHHHHHHHHHc----CCCcc-cccCCCcccccccccccccccccccccccc-----------cccccc
Confidence            555666  566666666665554    22222 355566666666666666666666555544           223334


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHcc
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYF  219 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~  219 (424)
                      .+.++++.++...+.+++++++..+.+.. .++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+ 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~-  143 (153)
T d1awcb_          66 VDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN-  143 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred             ccccccccccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHc-
Confidence            45556666666666666666666665544 4555666666666666666666666666666666666666666666666 


Q ss_pred             ccCCcHHHHHHH
Q 014436          220 DFKGDHHAMRQL  231 (424)
Q Consensus       220 ~~~~~~~~~~~L  231 (424)
                         ++.+++++|
T Consensus       144 ---g~~eiv~lL  152 (153)
T d1awcb_         144 ---GNEDLAEIL  152 (153)
T ss_dssp             ---TCHHHHHHH
T ss_pred             ---CCHHHHHhC
Confidence               666665543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=163.45  Aligned_cols=122  Identities=19%  Similarity=0.159  Sum_probs=110.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           96 KGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        96 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      .+.++||.|+.+|+.++|++|+++|++           ++.++..|.||+|.|+ .|+.+++++|+++|++++......+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad-----------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~   69 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN-----------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL   69 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-----------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc-----------cccccccccccccccc-ccccccccccccccccccccccccc
Confidence            356899999999999999999999998           6678899999999765 6999999999999999874444444


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHh
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFG  233 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~  233 (424)
                      .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+    ++.+++++|++
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~----g~~~~v~~Lls  123 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL----GHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH----TCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccCCCCCHHHHHHHc----CCHHHHHHHHh
Confidence            5799999999999999999999999999999999999999999    99999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.2e-25  Score=164.38  Aligned_cols=107  Identities=18%  Similarity=0.093  Sum_probs=102.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHHhc
Q 014436          281 MTALHLAAGRGHARTVETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFAAV  360 (424)
Q Consensus       281 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  360 (424)
                      .|||++|++.|+.++|++|++.|+++ +.++..|+||||+|+..++.++++++++.   |++++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~---g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHS---SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccc---cceeeecccccccchhhhhhc
Confidence            48999999999999999999999996 88999999999999999999999999998   899999999999999999999


Q ss_pred             CCcchhhhhccccchhhhhhcCCCCchhhHHh
Q 014436          361 RPSEFNRYMSRTTHANYQAVNDQNVSVGHIMK  392 (424)
Q Consensus       361 ~~~~~~~~LL~~~g~~~~~~~~~g~t~l~~a~  392 (424)
                      ++.+++++||+ +|+|++.+|..|+||+|+|.
T Consensus        79 ~~~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            99999999998 79999999999999999984

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.3e-24  Score=161.05  Aligned_cols=107  Identities=25%  Similarity=0.276  Sum_probs=93.4

Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCc
Q 014436           98 DTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKT  177 (424)
Q Consensus        98 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  177 (424)
                      .|||++|+++|+.++|++|+++|++           ++.++..|.||||+|+..|+.+++++|+++|++++ .++..|+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-----------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~t   70 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-----------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHIT   70 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-----------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-----------cccccccccccccccccccccccccccccccceee-eccccccc
Confidence            3789999999999999999998887           55678889999999999999999999999998876 67888999


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 014436          178 PLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAV  216 (424)
Q Consensus       178 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~  216 (424)
                      |||+|+.+|+.+++++|+++|++++.+|..|.||||+|.
T Consensus        71 pLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999999999999988763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.9e-24  Score=187.46  Aligned_cols=185  Identities=18%  Similarity=0.154  Sum_probs=120.9

Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHhcCCh-------HHHHHHHHhCCCCCCCCCCCCc
Q 014436          138 NNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAESESS-------DMVLTLLENCTSLSHEGPNGKT  210 (424)
Q Consensus       138 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~~~~~~~~~~~~~t  210 (424)
                      |.+|+||||+|+..|+.++|++|+++|+++. .+|..|+||||.|+..++.       ++++++.   ..+...|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            7889999999999999999999999999977 7888999999999986642       3344433   345667888999


Q ss_pred             HHHHHHHccccCCcHHHHHHHHhhcCCcccccCCCCChHHHHHHhcCChhHHHHHhhccccccccccCCCchHHHHHHhc
Q 014436          211 ALHAAVMYFDFKGDHHAMRQLFGRKKSLLKVTDQYGWTPIHYAAYHGKYWINDLLEIDQTATNIADKDRKMTALHLAAGR  290 (424)
Q Consensus       211 ~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~  290 (424)
                      |||.++...........+++.++.                          +..++..............+.++++.+...
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  233 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDI--------------------------LMGWIVKKQNRPIQSGTNEKESKPNDKNGE  233 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHH--------------------------HHHHHHHGGGCCEEEC--------------
T ss_pred             HHHHHHHHhCccccHHHHHHHHHH--------------------------HHHHHHhcCCcchhcccccccchhHHHHhc
Confidence            999998764444444444433211                          222222222222222222333333333322


Q ss_pred             CCHHHH-----HHHHhhCCCccccccCCCCcHHHHHHHcCCccchHHhhhCCccccccccccCCCCcHHHHHH
Q 014436          291 GHARTV-----ETILSLAPECFELVDNRRWNFLHYAVASFQLQDLKPLLRNPFARILINEGDAKGNTPLHVFA  358 (424)
Q Consensus       291 ~~~~~v-----~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~  358 (424)
                      .....+     ..++...   ++.+|..|+||||+|++.|+.+++++|++.   |++++.+|..|+|||++|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         234 RKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             chHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHcC
Confidence            222221     2222222   367889999999999999999999999998   9999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.9e-25  Score=164.45  Aligned_cols=121  Identities=16%  Similarity=0.075  Sum_probs=109.7

Q ss_pred             CCCHHHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCC-cHHH
Q 014436           24 QTDPKLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGD-TPLH  102 (424)
Q Consensus        24 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-t~L~  102 (424)
                      .+.++||.||..|++++|++|++.|++++..+..|.||||+|  + .|+.+++++|++.    +..++.++..+. ||||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a--~-~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM--M-MGSARVAELLLLH----GAEPNCADPATLTRPVH   74 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS--C-TTCHHHHHHHHTT----TCCCCCCCTTTCCCHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc--c-ccccccccccccc----ccccccccccccccccc
Confidence            345789999999999999999999999888899999999977  6 5899999999886    777888888776 6999


Q ss_pred             HHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhh
Q 014436          103 VAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTR  162 (424)
Q Consensus       103 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  162 (424)
                      +|+..|+.+++++|+++|++           ++.+|..|+||||+|+..|+.+++++|++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~-----------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGAR-----------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-----------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccc-----------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999988           66889999999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-23  Score=155.08  Aligned_cols=123  Identities=24%  Similarity=0.251  Sum_probs=103.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcH
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTP  178 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  178 (424)
                      ++|+.||..|+.++|++|+++|++           ++.+|.+|.||||+|+..|+.+++++|++.|++++ ..|.+|+||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-----------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-----------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-----------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-----------ccccccccccccccccccccccccccccccccccc-cccccCccc
Confidence            578999999999999999999988           56788899999999999999999999999998866 788889999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCCCC-CCCcHHHHHHHccccCCcHHHHHHHHhhc
Q 014436          179 LYMAAESESSDMVLTLLENCTSLSHEGP-NGKTALHAAVMYFDFKGDHHAMRQLFGRK  235 (424)
Q Consensus       179 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~  235 (424)
                      ||+|+.+|+.+++++|+++|++++..+. .+.|+++++...  .+|+.+++++|+...
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~--~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM--EEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS--STTCCCHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHH--HcChHHHHHHHHhHH
Confidence            9999999999999999999999887664 578887766422  127788888887643

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.1e-23  Score=155.70  Aligned_cols=122  Identities=20%  Similarity=0.090  Sum_probs=88.5

Q ss_pred             cchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcC
Q 014436           60 TILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNN  139 (424)
Q Consensus        60 t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~  139 (424)
                      ++|+.|  +..|+.+++++|++.    +.+++.+|..|+||||+|+..|+.+++++|++.|++           ++.+|.
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-----------~~~~d~   65 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-----------VNAADS   65 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----------TTCCCT
T ss_pred             HHHHHH--HHcCCHHHHHHHHHc----CCCccccccccccccccccccccccccccccccccc-----------cccccc
Confidence            466777  777777777777764    566677777777888888888888888888877776           556677


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHH--HhcCChHHHHHHHHhC
Q 014436          140 KKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMA--AESESSDMVLTLLENC  198 (424)
Q Consensus       140 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~  198 (424)
                      +|+||||+|+..|+.+++++|+++|++++......|.||++++  +..|+.+++++|++..
T Consensus        66 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          66 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            7888888888888888888888887776644445577776554  4567778888777643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.1e-21  Score=146.30  Aligned_cols=133  Identities=17%  Similarity=0.122  Sum_probs=113.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhC---CCHHHHHHHhhcCCCCCCCCCCCC
Q 014436           99 TPLHVAAKFGHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFP---GNMEVVKILTREDPDYPYSANDYG  175 (424)
Q Consensus        99 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g  175 (424)
                      ..|+.|++.++...+..++..|.+......     ....+..|+||||+|+..   +..+++++|+++|++++ .++..|
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~-----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g   81 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIP-----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKG   81 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCC-----CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCC-----cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhh
Confidence            346788999999999999998877432211     122366799999999964   67899999999999976 788899


Q ss_pred             CcHHHHHHhcCChHHHHHHHHhCCCCCCCCCCCCcHHHHHHHccccCCcHHHHHHHHhhcCCcccc
Q 014436          176 KTPLYMAAESESSDMVLTLLENCTSLSHEGPNGKTALHAAVMYFDFKGDHHAMRQLFGRKKSLLKV  241 (424)
Q Consensus       176 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~Ll~~~~~~~~~  241 (424)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..    ++.+++++|++.+....+.
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~----~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL----KHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTTCCCS
T ss_pred             ccccccccccccccccccccccCccccccCCCCCCHHHHHHHc----CCHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999999999999999999999999    9999999999987654433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.8e-22  Score=152.73  Aligned_cols=127  Identities=22%  Similarity=0.236  Sum_probs=86.1

Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHHhhccccCCcchhhhhhhHHhhhccHHHHHHHHHhCchhhhhhccCCCcHHHHHHHc
Q 014436           28 KLLKAAADGNAEPFKDMAREVIESLLTLQTRNTILHINIMCQDAENASTKFVEEILEICPALLIQVNAKGDTPLHVAAKF  107 (424)
Q Consensus        28 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~  107 (424)
                      .|..|++.+++..++.++..|.+....                                 ......+..|.||||+|++.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~---------------------------------~~~~~~~~~g~t~Lh~A~~~   55 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK---------------------------------IPLANGHEPDETALHLAVRS   55 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB---------------------------------CCCSSCSSTTCBHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC---------------------------------CCcccCCCCCCchHHHHHHh
Confidence            366777888877777777665532211                                 00111245577777777763


Q ss_pred             ---CcHHHHHHHHHhchhcccchHHHHHHHHHhcCCCCcHHHHHHhCCCHHHHHHHhhcCCCCCCCCCCCCCcHHHHHHh
Q 014436          108 ---GHSDIVRVLIDRAKLAQDGDEAARQMIRMVNNKKNTALHDAMFPGNMEVVKILTREDPDYPYSANDYGKTPLYMAAE  184 (424)
Q Consensus       108 ---g~~~~v~~Ll~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  184 (424)
                         |+.++|++|+++|++           ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|+||||+|+.
T Consensus        56 ~~~~~~~iv~~Ll~~gad-----------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~  123 (154)
T d1dcqa1          56 VDRTSLHIVDFLVQNSGN-----------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKR  123 (154)
T ss_dssp             CCTTTHHHHHHHHHHCSC-----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCCC-----------hhhhhhhhccccccccccccccccccccccCcccc-ccCCCCCCHHHHHHH
Confidence               566777777777776           55667777777777777777777777777777765 567777777777777


Q ss_pred             cCChHHHHHHHHhCC
Q 014436          185 SESSDMVLTLLENCT  199 (424)
Q Consensus       185 ~~~~~~v~~Ll~~~~  199 (424)
                      .|+.+++++|++.+.
T Consensus       124 ~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         124 LKHEHCEELLTQALS  138 (154)
T ss_dssp             TTCHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhCC
Confidence            777777777777653