Citrus Sinensis ID: 014455

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----

MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVSS

ccccccccccccEEEccEEEEEEEEcccEEEEccccccccccccEEEEEEEEcEEEEEEEEEEccccEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHcccccccEEEEEccccHHHHHHHHHHccccccccccccEEEEccccccccEEEccccccccccHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEcEEEEEEEcccccccccccHHHHHHHHHHHHHccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEEEcccccccccccccccccccEEEEEEEccccHHHHHHHHHHcccccccccccEEEEEEEc

ccccccccccccEEEcccEEEEEEccccEEEEccccccEEEEcHHEEEEEEcccEEEEEEEEEcccccEEcccccccccccEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHcccccccEEEEEccccHHHHHHHcHcccccHHHHccccEEEEEccccHHHHHHHHccccccccHHHHHHHHHHccccccEEEEEEccccEEEEEEEHHHEEEEccccccHHHHcccccHEEHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEcccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccccccEEEEEEEcc

MDQIVQDTLSDRVRVSGRITAMtltgdgrlrwtdghqrsLTLEKQVLGFVVEGSKIRIRAVvdgrdeiccggragsvvrkdfvfeplsedskRLWCEKLRDFIDsfgrpkrlyifvnpfggkkiaskiflddvkplledanIQFTVQETTQQLHAKEIVKVLDlskydgivcvsGDGILVEVVNGlleredwndaikvplgvvpagtgngMIKSLLDLvgepckasNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYngrvsfvpapgfenhgepstyseqnicnpipsqqqpikilqhgyqgpdvdlknlewriINGPFVAVWLhnvpwgsentmaapdakfsdgyldliiikdcPKLALFSLLSNlnkgghvespYVAYLKVSS

mdqivqdtlsdrvrvsgritamtltgdgrlrwtdghqrsltlekqvlgfvvegskiriravvdgrdeiccggragsvvrkdfvfeplsedskrlwCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSnlnkgghvespyvaylkvss

************VRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGF***********************PIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL****

************VRVSGRITAMTLTGDGRLRWTD******TLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID*FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKI*********VDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVSS

******DTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPG*******************************GYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVSS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		424	2.2.26 [Sep-21-2011]
Q9NYA1		384	Sphingosine kinase 1 OS=H	yes	no	0.691	0.763	0.335	3e-39
Q9JIA7		617	Sphingosine kinase 2 OS=M	yes	no	0.464	0.319	0.413	1e-38
Q86KF9		624	Sphingosine kinase A OS=D	yes	no	0.450	0.306	0.436	2e-37
Q9NRA0		654	Sphingosine kinase 2 OS=H	no	no	0.445	0.288	0.415	1e-36
Q8TCT0		537	Ceramide kinase OS=Homo s	no	no	0.757	0.597	0.302	5e-36
Q8CI15		382	Sphingosine kinase 1 OS=M	no	no	0.707	0.785	0.319	6e-36
Q91V26		383	Sphingosine kinase 1 OS=R	no	no	0.709	0.785	0.32	3e-35
Q8K4Q7		531	Ceramide kinase OS=Mus mu	no	no	0.785	0.627	0.294	4e-33
O14159		458	Sphingoid long chain base	yes	no	0.75	0.694	0.283	4e-29
Q18425		473	Sphingosine kinase 1 OS=C	yes	no	0.721	0.646	0.277	3e-26

>sp\|Q9NYA1\|SPHK1_HUMAN Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1	Back alignment and function desciption

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 168/334 (50%), Gaps = 41/334 (12%)

Query: 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY 167
           RP R+ + +NP GGK  A ++F   V+PLL +A I FT+  T ++ HA+E+V+  +L ++
Sbjct: 13  RPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRW 72

Query: 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVG------- 220
           D +V +SGDG++ EVVNGL+ER DW  AI+ PL  +PAG+GN +  SL    G       
Sbjct: 73  DALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNE 132

Query: 221 -EPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSA 279
                 +  +   +     LL + T      R  SVL LAWG +AD+D+ESEKYR +G  
Sbjct: 133 DLLTNCTLLLCRRLLSPMNLLSLHT--ASGLRLFSVLSLAWGFIADVDLESEKYRRLGEM 190

Query: 280 RIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGY 339
           R       R+  LR Y GR++++P               +   +P+  QQ P+       
Sbjct: 191 RFTLGTFLRLAALRTYRGRLAYLPV---------GRVGSKTPASPVVVQQGPV------- 234

Query: 340 QGPDVDLKNLE------WRII-NGPFVAVW-LHNVPWGSENTMAAPDAKFSDGYLDLIII 391
              D  L  LE      W ++ +  FV V  L +   GSE   AAP  + + G + L  +
Sbjct: 235 ---DAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSE-MFAAPMGRCAAGVMHLFYV 290

Query: 392 K-DCPKLALFSLLSNLNKGGHV--ESPYVAYLKV 422
           +    +  L  L   + KG H+  E PY+ Y+ V
Sbjct: 291 RAGVSRAMLLRLFLAMEKGRHMEYECPYLVYVPV 324

Catalyzes the phosphorylation of sphingosine to form sphingosine 1-phosphate (SPP), a lipid mediator with both intra-and extracellular functions. Also acts on D-erythro-sphingosine and to a lesser extent sphinganine, but not other lipids, such as D,L-threo-dihydrosphingosine, N,N-dimethylsphingosine, diacylglycerol, ceramide, or phosphatidylinositol.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 9EC: 1

>sp\|Q9JIA7\|SPHK2_MOUSE Sphingosine kinase 2 OS=Mus musculus GN=Sphk2 PE=1 SV=2	Back alignment and function description

>sp\|Q86KF9\|SPHKA_DICDI Sphingosine kinase A OS=Dictyostelium discoideum GN=sgkA PE=2 SV=2	Back alignment and function description

>sp\|Q9NRA0\|SPHK2_HUMAN Sphingosine kinase 2 OS=Homo sapiens GN=SPHK2 PE=1 SV=2	Back alignment and function description

>sp\|Q8TCT0\|CERK1_HUMAN Ceramide kinase OS=Homo sapiens GN=CERK PE=1 SV=1	Back alignment and function description

>sp\|Q8CI15\|SPHK1_MOUSE Sphingosine kinase 1 OS=Mus musculus GN=Sphk1 PE=1 SV=1	Back alignment and function description

>sp\|Q91V26\|SPHK1_RAT Sphingosine kinase 1 OS=Rattus norvegicus GN=Sphk1 PE=2 SV=1	Back alignment and function description

>sp\|Q8K4Q7\|CERK1_MOUSE Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=2	Back alignment and function description

>sp\|O14159\|LCB4_SCHPO Sphingoid long chain base kinase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcb4 PE=3 SV=1	Back alignment and function description

>sp\|Q18425\|SPHK1_CAEEL Sphingosine kinase 1 OS=Caenorhabditis elegans GN=sphk-1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		424
255567389		479	Sphingosine kinase, putative [Ricinus co	0.988	0.874	0.698	1e-178
359495505		489	PREDICTED: sphingosine kinase B-like [Vi	1.0	0.867	0.685	1e-175
302144199		506	unnamed protein product [Vitis vinifera]	1.0	0.837	0.685	1e-175
224116224		494	predicted protein [Populus trichocarpa]	0.976	0.838	0.695	1e-174
356555028		488	PREDICTED: sphingosine kinase A-like [Gl	1.0	0.868	0.656	1e-165
356524740		486	PREDICTED: sphingosine kinase A-like [Gl	0.976	0.851	0.659	1e-163
334186773		485	sphingosine kinase 1 [Arabidopsis thalia	0.962	0.841	0.634	1e-155
449434352		491	PREDICTED: sphingosine kinase B-like [Cu	0.962	0.830	0.629	1e-155
147797198		487	hypothetical protein VITISV_004834 [Viti	0.992	0.864	0.627	1e-154
449479617		491	PREDICTED: sphingosine kinase B-like [Cu	0.962	0.830	0.626	1e-154

>gi\|255567389\|ref\|XP_002524674.1\| Sphingosine kinase, putative [Ricinus communis] gi\|223536035\|gb\|EEF37693.1\| Sphingosine kinase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 296/424 (69%), Positives = 357/424 (84%), Gaps = 5/424 (1%)

Query: 1   MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRA 60
           MD   Q  +SD+V V+G  T +TLT  G LRWTD  QR LT+EK+VLGFV+EGSKIR++ 
Sbjct: 1   MDSSPQPIISDQVIVNGATTLLTLTAGGILRWTDRGQRCLTVEKEVLGFVIEGSKIRVKT 60

Query: 61  VVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG 120
           ++D  D ICC G +G++VRKDFVF+PL+EDS+R+ C +LRD++DS GRPKRL +FVNPFG
Sbjct: 61  IIDNGDGICCAGNSGALVRKDFVFQPLTEDSQRVLCNRLRDYLDSLGRPKRLLVFVNPFG 120

Query: 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180
           GK+ ASKIF D VKPLLEDA++Q T+QET  QLHAKE+   LD+SKYDGIVCVSGDGILV
Sbjct: 121 GKRSASKIFFDTVKPLLEDADVQITLQETKHQLHAKEVTSTLDISKYDGIVCVSGDGILV 180

Query: 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240
           EVVNGLL REDW DAIK+PLG+VPAGT NGM KSLLD VGEPCKASNA+LA+IRGHK  L
Sbjct: 181 EVVNGLLAREDWRDAIKLPLGMVPAGTSNGMAKSLLDSVGEPCKASNAVLAIIRGHKCSL 240

Query: 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVS 300
           DVATILQG+T+F SVLML+WGLVADIDIESEKYRWMGSARIDFYA+QRI +LR YNG +S
Sbjct: 241 DVATILQGETKFFSVLMLSWGLVADIDIESEKYRWMGSARIDFYAVQRIFHLRHYNGCIS 300

Query: 301 FVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVA 360
           FVPAPGFE +G P++Y+ ++       Q+QP+K  QHGYQGPDV+L NL+WR+I+GPFV+
Sbjct: 301 FVPAPGFETYGVPTSYNAESTSK----QEQPLKT-QHGYQGPDVNLVNLDWRMISGPFVS 355

Query: 361 VWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL 420
           +WLHNVPWG E+ MAAPDAKFSDGYLDLI+I+ CPKL+L +L++ LN G HV+SPYV YL
Sbjct: 356 IWLHNVPWGGEDVMAAPDAKFSDGYLDLILIQQCPKLSLLALMTALNNGDHVKSPYVIYL 415

Query: 421 KVSS 424
           KV +
Sbjct: 416 KVKA 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495505\|ref\|XP_002270943.2\| PREDICTED: sphingosine kinase B-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302144199\|emb\|CBI23326.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224116224\|ref\|XP_002317243.1\| predicted protein [Populus trichocarpa] gi\|222860308\|gb\|EEE97855.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356555028\|ref\|XP_003545841.1\| PREDICTED: sphingosine kinase A-like [Glycine max]	Back alignment and taxonomy information

>gi\|356524740\|ref\|XP_003530986.1\| PREDICTED: sphingosine kinase A-like [Glycine max]	Back alignment and taxonomy information

>gi\|334186773\|ref\|NP_193885.6\| sphingosine kinase 1 [Arabidopsis thaliana] gi\|22136030\|gb\|AAM91597.1\| putative protein [Arabidopsis thaliana] gi\|30387599\|gb\|AAP31965.1\| At4g21540 [Arabidopsis thaliana] gi\|332659065\|gb\|AEE84465.1\| sphingosine kinase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449434352\|ref\|XP_004134960.1\| PREDICTED: sphingosine kinase B-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147797198\|emb\|CAN60368.1\| hypothetical protein VITISV_004834 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449479617\|ref\|XP_004155653.1\| PREDICTED: sphingosine kinase B-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		424
UNIPROTKB\|I3LK44		653	SPHK2 "Uncharacterized protein	0.525	0.341	0.4	3.2e-47
UNIPROTKB\|I3L807		655	LOC100738292 "Uncharacterized	0.525	0.340	0.4	3.4e-47
DICTYBASE\|DDB_G0272522		624	sgkA "sphingosine kinase" [Dic	0.464	0.315	0.429	4.6e-46
UNIPROTKB\|J9P106		674	SPHK2 "Uncharacterized protein	0.528	0.332	0.402	1.4e-45
UNIPROTKB\|E2RR84		765	SPHK2 "Uncharacterized protein	0.528	0.292	0.402	6e-45
UNIPROTKB\|B4DU87		595	SPHK2 "Sphingosine kinase 2" [	0.525	0.374	0.395	1.8e-44
RGD\|1307757		616	Sphk2 "sphingosine kinase 2" [	0.516	0.355	0.393	2.4e-44
MGI\|MGI:1861380		617	Sphk2 "sphingosine kinase 2" [	0.514	0.353	0.396	4.3e-44
UNIPROTKB\|Q9NRA0		654	SPHK2 "Sphingosine kinase 2" [	0.525	0.340	0.395	1.3e-43
UNIPROTKB\|A0T4C8		761	SPHK2 "Sphingosine kinase-2 va	0.525	0.293	0.395	6.1e-43

UNIPROTKB\|I3LK44 SPHK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 427 (155.4 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
 Identities = 94/235 (40%), Positives = 143/235 (60%)

Query:   104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163
             D   RP RL + VNPFGG+ +A +   + V P++ +A + F + +T +Q HA+E+V+ L 
Sbjct:   176 DLLPRPPRLLLLVNPFGGRGLAWQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLS 235

Query:   164 LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVG-EP 222
             LS++DGIV VSGDG+L EV+NGLL+R DW +A+K P+G++P G+GN +  ++    G EP
Sbjct:   236 LSEWDGIVTVSGDGLLYEVLNGLLDRPDWEEAVKTPVGILPCGSGNALAGAVNQHGGFEP 295

Query:   223 CKAS----NAILAVIRGHKRLLDVATI-LQGKTRFHSVLMLAWGLVADIDIESEKYRWMG 277
                     N  L + RG  R LD+ ++ L   +R  S L +AWG ++D+DI+SE++R +G
Sbjct:   296 ALGIDLLLNCSLLLCRGGGRPLDLLSVTLASGSRCFSFLSVAWGFISDVDIQSERFRALG 355

Query:   278 SARIDFYALQRILYLRQYNGRVSFVPA---PGFEN--HGEPSTYSEQNICNPIPS 327
             SAR     +  +  L  Y GR+S++PA   P      HG P   SE  +  P P+
Sbjct:   356 SARFTLGTVLGLATLHTYRGRLSYLPATVEPASPTPAHGLPRAKSELTLA-PAPA 409

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004143 "diacylglycerol kinase activity" evidence=IEA

UNIPROTKB\|I3L807 LOC100738292 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0272522 sgkA "sphingosine kinase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P106 SPHK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR84 SPHK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DU87 SPHK2 "Sphingosine kinase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1307757 Sphk2 "sphingosine kinase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1861380 Sphk2 "sphingosine kinase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NRA0 SPHK2 "Sphingosine kinase 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A0T4C8 SPHK2 "Sphingosine kinase-2 variant" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.91	LOW CONFIDENCE prediction!
4th Layer	2.7.1.107	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110307	diacylglycerol kinase/D-erythro-sphingosine kinase (EC-2.7.1.91) (494 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.794.1	hypothetical protein (532 aa)	•	•	0.910
	eugene3.00161045	hypothetical protein (786 aa)	•	•	0.901
	gw1.3952.2.1	annotation not avaliable (252 aa)	•		0.899
	fgenesh4_pg.C_LG_X001729	hypothetical protein (291 aa)	•		0.899
	fgenesh4_pg.C_LG_I002447	hypothetical protein (254 aa)	•		0.899
	eugene3.00110197	hypothetical protein (256 aa)	•		0.899
	estExt_fgenesh4_pm.C_LG_V0449	hypothetical protein (257 aa)	•		0.899
	estExt_fgenesh4_pm.C_1660029	hypothetical protein (256 aa)	•		0.899
	estExt_fgenesh4_pg.C_LG_II0572	SubName- Full=Putative uncharacterized protein; (257 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		424
PLN02958		481	PLN02958, PLN02958, diacylglycerol kinase/D-erythr	0.0
COG1597		301	COG1597, LCB5, Sphingosine kinase and enzymes rela	9e-34
pfam00781		127	pfam00781, DAGK_cat, Diacylglycerol kinase catalyt	4e-30
smart00046		124	smart00046, DAGKc, Diacylglycerol kinase catalytic	7e-14
PLN02204		601	PLN02204, PLN02204, diacylglycerol kinase	2e-13
TIGR00147		293	TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/Bm	1e-12
PLN02204		601	PLN02204, PLN02204, diacylglycerol kinase	3e-10
PRK13337		304	PRK13337, PRK13337, putative lipid kinase; Reviewe	7e-10
PRK13055		334	PRK13055, PRK13055, putative lipid kinase; Reviewe	2e-07
PRK13059		295	PRK13059, PRK13059, putative lipid kinase; Reviewe	1e-06
PRK13055		334	PRK13055, PRK13055, putative lipid kinase; Reviewe	8e-06
PRK12361		547	PRK12361, PRK12361, hypothetical protein; Provisio	3e-05
PRK13059		295	PRK13059, PRK13059, putative lipid kinase; Reviewe	2e-04
PRK00861		300	PRK00861, PRK00861, putative lipid kinase; Reviewe	7e-04
PRK13337		304	PRK13337, PRK13337, putative lipid kinase; Reviewe	0.002
PRK11914		306	PRK11914, PRK11914, diacylglycerol kinase; Reviewe	0.002

>gnl\|CDD\|215517 PLN02958, PLN02958, diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

 Score =  743 bits (1919), Expect = 0.0
 Identities = 302/424 (71%), Positives = 361/424 (85%), Gaps = 5/424 (1%)

Query: 1   MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRA 60
            +      +SDRV V+G +T +TLT +G+LRWTD  QR LT+EK+VLGFV+EGSKIR++ 
Sbjct: 3   DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKT 62

Query: 61  VVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG 120
           +V+    ICC G AG++ RKDFVFEPLS++S+RLWC+KLRD++DS GRPKRL +FVNPFG
Sbjct: 63  IVEKGGGICCRGSAGALARKDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFG 122

Query: 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180
           GKK ASKIF D VKPLLEDA+IQ T+QET  QLHAKE+V+ +DLSKYDGIVCVSGDGILV
Sbjct: 123 GKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILV 182

Query: 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240
           EVVNGLLEREDW  AIK+P+G+VPAGTGNGM KSLLD VGEPC A+NA+LA+IRGHK  L
Sbjct: 183 EVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSL 242

Query: 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVS 300
           DVATILQG+T+F SVLMLAWGLVADIDIESEKYRWMGSAR+DFY LQRIL LRQYNGR+S
Sbjct: 243 DVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRIS 302

Query: 301 FVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVA 360
           FVPAPGFE +GEP++Y+ ++      S+++  K  QHGYQGPDV L+NL+WR I GPFV+
Sbjct: 303 FVPAPGFEAYGEPTSYNGES-----TSKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVS 357

Query: 361 VWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL 420
           VWLHNVPWG E+T+AAPDAKFSDGYLDLI+IKDCPKLAL +L++ L+ G HV+SPYV YL
Sbjct: 358 VWLHNVPWGGEDTLAAPDAKFSDGYLDLILIKDCPKLALLALMTKLSDGTHVKSPYVMYL 417

Query: 421 KVSS 424
           KV +
Sbjct: 418 KVKA 421

Length = 481

>gnl\|CDD\|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>gnl\|CDD\|216116 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain	Back alignment and domain information

>gnl\|CDD\|214487 smart00046, DAGKc, Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>gnl\|CDD\|215126 PLN02204, PLN02204, diacylglycerol kinase	Back alignment and domain information

>gnl\|CDD\|161732 TIGR00147, TIGR00147, lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>gnl\|CDD\|215126 PLN02204, PLN02204, diacylglycerol kinase	Back alignment and domain information

>gnl\|CDD\|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237282 PRK13055, PRK13055, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183473 PRK12361, PRK12361, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|183858 PRK13059, PRK13059, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|234850 PRK00861, PRK00861, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		424
PLN02958		481	diacylglycerol kinase/D-erythro-sphingosine kinase	100.0
PLN02204		601	diacylglycerol kinase	100.0
KOG1116		579	consensus Sphingosine kinase, involved in sphingol	100.0
KOG1115		516	consensus Ceramide kinase [Lipid transport and met	100.0
PRK11914		306	diacylglycerol kinase; Reviewed	100.0
PRK13059		295	putative lipid kinase; Reviewed	100.0
PRK13337		304	putative lipid kinase; Reviewed	100.0
PRK13055		334	putative lipid kinase; Reviewed	100.0
PRK13057		287	putative lipid kinase; Reviewed	100.0
PRK00861		300	putative lipid kinase; Reviewed	100.0
COG1597		301	LCB5 Sphingosine kinase and enzymes related to euk	100.0
PRK13054		300	lipid kinase; Reviewed	100.0
TIGR03702		293	lip_kinase_YegS lipid kinase YegS. Members of this	100.0
TIGR00147		293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	100.0
PRK12361		547	hypothetical protein; Provisional	100.0
PF00781		130	DAGK_cat: Diacylglycerol kinase catalytic domain;	99.94
smart00046		124	DAGKc Diacylglycerol kinase catalytic domain (pres	99.88
KOG4435		535	consensus Predicted lipid kinase [Lipid transport	99.87
KOG1169		634	consensus Diacylglycerol kinase [Lipid transport a	99.82
KOG0782		1004	consensus Predicted diacylglycerol kinase [Signal	99.74
smart00045		160	DAGKa Diacylglycerol kinase accessory domain (pres	99.12
PRK03708		277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	99.09
PRK02645		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.95
COG3199		355	Predicted inorganic polyphosphate/ATP-NAD kinase [	98.57
PRK01231		295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.37
PRK03378		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	98.33
KOG1170		1099	consensus Diacylglycerol kinase [Lipid transport a	98.09
PRK03372		306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.95
PRK02155		291	ppnK NAD(+)/NADH kinase family protein; Provisiona	97.94
PF01513		285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	97.89
PRK02649		305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.67
PRK04539		296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.62
PRK14077		287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	97.58
PRK14076		569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	97.57
PF00609		161	DAGK_acc: Diacylglycerol kinase accessory domain;	97.55
PRK01911		292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.49
PRK03501		264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.48
PLN02935		508	Bifunctional NADH kinase/NAD(+) kinase	97.47
PRK04885		265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	97.4
PLN02727		986	NAD kinase	97.29
PRK00561		259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.97
PRK14075		256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	96.84
PRK01185		271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	96.73
PLN02929		301	NADH kinase	96.71
PRK02231		272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.85
PF13685		250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	95.53
PF11711		382	Tim54: Inner membrane protein import complex subun	95.33
cd08186		383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	95.22
cd08181		357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	95.14
PRK04761		246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	95.11
cd08194		375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	94.89
cd08176		377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	94.81
cd08549		332	G1PDH_related Glycerol-1-phosphate_dehydrogenase a	94.66
KOG4180		395	consensus Predicted kinase [General function predi	94.66
COG0061		281	nadF NAD kinase [Coenzyme metabolism]	94.63
PRK10624		382	L-1,2-propanediol oxidoreductase; Provisional	94.55
cd08197		355	DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly	94.36
cd08187		382	BDH Butanol dehydrogenase catalyzes the conversion	94.28
cd08195		345	DHQS Dehydroquinate synthase (DHQS) catalyzes the	94.13
cd08185		380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	94.12
cd08171		345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	94.04
PRK00843		350	egsA NAD(P)-dependent glycerol-1-phosphate dehydro	93.91
cd08550		349	GlyDH-like Glycerol_dehydrogenase-like. Families o	93.79
cd08173		339	Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro	93.65
TIGR02638		379	lactal_redase lactaldehyde reductase. This clade o	93.63
PRK00002		358	aroB 3-dehydroquinate synthase; Reviewed	93.34
cd08199		354	EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-	93.33
cd08191		386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	93.1
cd08188		377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	93.03
PRK09860		383	putative alcohol dehydrogenase; Provisional	92.86
PRK09423		366	gldA glycerol dehydrogenase; Provisional	92.85
PRK10586		362	putative oxidoreductase; Provisional	92.57
cd08178		398	AAD_C C-terminal alcohol dehydrogenase domain of t	92.49
cd08172		347	GlyDH-like1 Glycerol dehydrogenases-like. Glycerol	92.3
cd08174		331	G1PDH-like Glycerol-1-phosphate dehydrogenase-like	92.13
TIGR01357		344	aroB 3-dehydroquinate synthase. This model represe	92.1
cd08170		351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	91.91
cd08551		370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	91.7
KOG2178		409	consensus Predicted sugar kinase [Carbohydrate tra	91.59
cd08193		376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	91.15
cd08192		370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	90.92
PF10254		414	Pacs-1: PACS-1 cytosolic sorting protein; InterPro	90.84
cd08190		414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	90.68
cd08182		367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	90.47
cd07766		332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	90.42
cd08175		348	G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c	90.34
cd08179		375	NADPH_BDH NADPH-dependent butanol dehydrogenase in	90.18
COG1454		377	EutG Alcohol dehydrogenase, class IV [Energy produ	90.12
cd08180		332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	89.99
PRK15454		395	ethanol dehydrogenase EutG; Provisional	89.28
PLN02834		433	3-dehydroquinate synthase	89.16
COG0371		360	GldA Glycerol dehydrogenase and related enzymes [E	88.87
PF00731		150	AIRC: AIR carboxylase; InterPro: IPR000031 Phospho	88.85
PRK15138		387	aldehyde reductase; Provisional	86.6
KOG1170		1099	consensus Diacylglycerol kinase [Lipid transport a	85.48
cd08183		374	Fe-ADH2 Iron-containing alcohol dehydrogenases-lik	85.22
PRK14021		542	bifunctional shikimate kinase/3-dehydroquinate syn	84.5
cd08177		337	MAR Maleylacetate reductase is involved in many ar	84.38
PRK06203		389	aroB 3-dehydroquinate synthase; Reviewed	84.29
cd08198		369	DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH	83.79
cd08184		347	Fe-ADH3 Iron-containing alcohol dehydrogenases-lik	83.56
cd08169		344	DHQ-like Dehydroquinate synthase-like which includ	83.53
cd06167		149	LabA_like LabA_like proteins. A well conserved gro	83.41
PRK11780		217	isoprenoid biosynthesis protein with amidotransfer	83.23
cd08189		374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	81.6
PF00465		366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	81.58
cd01536		267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	81.49
PRK06756		148	flavodoxin; Provisional	81.44
cd06295		275	PBP1_CelR Ligand binding domain of a transcription	81.33
TIGR01162		156	purE phosphoribosylaminoimidazole carboxylase, Pur	81.08
PRK05282		233	(alpha)-aspartyl dipeptidase; Validated	80.45
TIGR03405		355	Phn_Fe-ADH phosphonate metabolism-associated iron-	80.37

>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase	Back alignment and domain information

Probab=100.00  E-value=9.6e-83  Score=657.30  Aligned_cols=418  Identities=72%  Similarity=1.237  Sum_probs=375.3

Q ss_pred             CcccccceeceEEEeceeEEEEEcCCCeEEEecCCccceeeeeeeeEEEEcCceEEEEEeecCCCcccccCCCCceEEee
Q 014455            2 DQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKD   81 (424)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (424)
                      +..++++++++|+|||..+++||+++|+|+|++++++|+++++||||+.++|++++|++++++..+.+|.+++++|+|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (481)
T PLN02958          4 ELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARKD   83 (481)
T ss_pred             cCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceeee
Confidence            45566799999999999999999999999999988999999999999999999999999999988999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH
Q 014455           82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV  161 (424)
Q Consensus        82 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~  161 (424)
                      |+|.+.+.+.|+.|+++|++++++.+||||++||+||.||++++.++|.++++++|++++++++++.|++++||.+++++
T Consensus        84 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~  163 (481)
T PLN02958         84 FVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRT  163 (481)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHH
Confidence            99999999999999999999999889999999999999999999988877899999999999999999999999999999


Q ss_pred             hccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeee
Q 014455          162 LDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLD  241 (424)
Q Consensus       162 ~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lD  241 (424)
                      ++..+||.|||+|||||||||+|||+.+++|+...++||||||+||||||||+|.+..|+|.++.+|+..|++|+.+++|
T Consensus       164 ~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~vD  243 (481)
T PLN02958        164 MDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSLD  243 (481)
T ss_pred             hhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEEe
Confidence            88789999999999999999999999988777677899999999999999999976668999999999999999999999


Q ss_pred             eEEEEeCCeeEEEEEeeeeeeeecccccccccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCc
Q 014455          242 VATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNI  321 (424)
Q Consensus       242 l~~v~~g~~~~f~~~~~~~G~~Adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~  321 (424)
                      ++++++++.++|++++++|||+|+|+..++++||||++||.+++++++++++.|+++|+|+|+++.+.++.|.++.....
T Consensus       244 lg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~~~a~~~~~~~~~~~~~~~~~  323 (481)
T PLN02958        244 VATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISFVPAPGFEAYGEPTSYNGEST  323 (481)
T ss_pred             EEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEEEecccccccccccccccccc
Confidence            99998655567766789999999999999999999999999999999999999999999999988877776655432100


Q ss_pred             CCCCCCCCCcccccccccCCCcccCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHH
Q 014455          322 CNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFS  401 (424)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~  401 (424)
                           .++.+...+...+.++..+.+..+|+.+++.|++++++|++|+|+++.++|+|+++||+|||+++++++++++++
T Consensus       324 -----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~LDlviv~~~s~~~lL~  398 (481)
T PLN02958        324 -----SKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYLDLILIKDCPKLALLA  398 (481)
T ss_pred             -----ccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeEEEEEEcCCCHHHHHH
Confidence                 000011111123444444445568999999999899999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCcccCCCeEEEEeeC
Q 014455          402 LLSNLNKGGHVESPYVAYLKVSS  424 (424)
Q Consensus       402 ~l~~~~~G~h~~~p~V~~~k~ka  424 (424)
                      +|+++.+|+|+++|+|+|+++|+
T Consensus       399 ~l~~~~~G~h~~~~~V~~~k~k~  421 (481)
T PLN02958        399 LMTKLSDGTHVKSPYVMYLKVKA  421 (481)
T ss_pred             HHHHHhCCCccCCCceEEEEEEE
Confidence            99999999999999999999874

>PLN02204 diacylglycerol kinase	Back alignment and domain information

>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PRK11914 diacylglycerol kinase; Reviewed	Back alignment and domain information

>PRK13059 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13337 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13055 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK13057 putative lipid kinase; Reviewed	Back alignment and domain information

>PRK00861 putative lipid kinase; Reviewed	Back alignment and domain information

>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	Back alignment and domain information

>PRK13054 lipid kinase; Reviewed	Back alignment and domain information

>TIGR03702 lip_kinase_YegS lipid kinase YegS	Back alignment and domain information

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family	Back alignment and domain information

>PRK12361 hypothetical protein; Provisional	Back alignment and domain information

>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]	Back alignment and domain information

>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed)	Back alignment and domain information

>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]	Back alignment and domain information

>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed)	Back alignment and domain information

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	Back alignment and domain information

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]	Back alignment and domain information

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional	Back alignment and domain information

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2	Back alignment and domain information

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase	Back alignment and domain information

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02727 NAD kinase	Back alignment and domain information

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PLN02929 NADH kinase	Back alignment and domain information

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional	Back alignment and domain information

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C	Back alignment and domain information

>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol	Back alignment and domain information

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase	Back alignment and domain information

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)	Back alignment and domain information

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed	Back alignment and domain information

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria	Back alignment and domain information

>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins	Back alignment and domain information

>KOG4180 consensus Predicted kinase [General function prediction only]	Back alignment and domain information

>COG0061 nadF NAD kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional	Back alignment and domain information

>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics	Back alignment and domain information

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	Back alignment and domain information

>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	Back alignment and domain information

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like	Back alignment and domain information

>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd08550 GlyDH-like Glycerol_dehydrogenase-like	Back alignment and domain information

>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme	Back alignment and domain information

>TIGR02638 lactal_redase lactaldehyde reductase	Back alignment and domain information

>PRK00002 aroB 3-dehydroquinate synthase; Reviewed	Back alignment and domain information

>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS)	Back alignment and domain information

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate	Back alignment and domain information

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PRK09860 putative alcohol dehydrogenase; Provisional	Back alignment and domain information

>PRK09423 gldA glycerol dehydrogenase; Provisional	Back alignment and domain information

>PRK10586 putative oxidoreductase; Provisional	Back alignment and domain information

>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD)	Back alignment and domain information

>cd08172 GlyDH-like1 Glycerol dehydrogenases-like	Back alignment and domain information

>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like	Back alignment and domain information

>TIGR01357 aroB 3-dehydroquinate synthase	Back alignment and domain information

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation	Back alignment and domain information

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like	Back alignment and domain information

>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor	Back alignment and domain information

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway	Back alignment and domain information

>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system	Back alignment and domain information

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism	Back alignment and domain information

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)	Back alignment and domain information

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)	Back alignment and domain information

>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner	Back alignment and domain information

>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria	Back alignment and domain information

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]	Back alignment and domain information

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	Back alignment and domain information

>PRK15454 ethanol dehydrogenase EutG; Provisional	Back alignment and domain information

>PLN02834 3-dehydroquinate synthase	Back alignment and domain information

>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]	Back alignment and domain information

>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE	Back alignment and domain information

>PRK15138 aldehyde reductase; Provisional	Back alignment and domain information

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]	Back alignment and domain information

>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional	Back alignment and domain information

>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes	Back alignment and domain information

>PRK06203 aroB 3-dehydroquinate synthase; Reviewed	Back alignment and domain information

>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like	Back alignment and domain information

>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase	Back alignment and domain information

>cd06167 LabA_like LabA_like proteins	Back alignment and domain information

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional	Back alignment and domain information

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like	Back alignment and domain information

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1	Back alignment and domain information

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily	Back alignment and domain information

>PRK06756 flavodoxin; Provisional	Back alignment and domain information

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators	Back alignment and domain information

>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein	Back alignment and domain information

>PRK05282 (alpha)-aspartyl dipeptidase; Validated	Back alignment and domain information

>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		424
2qv7_A		337	Crystal Structure Of Diacylglycerol Kinase Dgkb In		2e-05
3t5p_A		306	Crystal Structure Of A Putative Diacylglycerol Kina		3e-04
3s40_A		304	The Crystal Structure Of A Diacylglycerol Kinases F		3e-04

>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex With Adp And Mg Length = 337

Back alignment and structure

Iteration: 1

Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 KR I NP GK+ K L D LE A + + T + A + YD Sbjct: 25 KRARIIYNPTSGKE-QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDV 83 Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229 ++ GDG L EVVNG+ E+ + + LGV+P GT N ++L P A+ Sbjct: 84 LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPXGTVNDFGRALHI----PNDIXGAL 134 Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 261 +I GH +D+ GK + LA G Sbjct: 135 DVIIEGHSTKVDI-----GKXNNRYFINLAAG 161

PyMOL of 2qv7

>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From Bacillus Anthracis Str. Sterne Length = 306

Back alignment and structure

>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From Bacillus Anthracis Str. Sterne Length = 304

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		424
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	2e-41
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	5e-40
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	6e-34

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Length = 337	Back alignment and structure

 Score =  148 bits (376), Expect = 2e-41
 Identities = 66/317 (20%), Positives = 112/317 (35%), Gaps = 64/317 (20%)

Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
           KR  I  NP  GK+   +  L D    LE A  + +   T +   A    +      YD 
Sbjct: 25  KRARIIYNPTSGKEQFKRE-LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDV 83

Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229
           ++   GDG L EVVNG+ E+ +     +  LGV+P GT N   ++L      P     A+
Sbjct: 84  LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPMGTVNDFGRAL----HIPNDIMGAL 134

Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFYALQ 287
             +I GH   +D+  +      F  + + A G +  +  +  S+    +G         +
Sbjct: 135 DVIIEGHSTKVDIGKM--NNRYF--INLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFE 190

Query: 288 RILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLK 347
            +  ++  + R+ +    G    GE   +                               
Sbjct: 191 MLPQMKAVDLRIEY---DGNVFQGEALLFF------------------------------ 217

Query: 348 NLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN 407
                +     +                 PDAK  DGY  LII++      L  +++  +
Sbjct: 218 -----LGLTNSM---------AG-FEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLAS 262

Query: 408 KGGHVESPYVAYLKVSS 424
           +G H + P V Y K  +
Sbjct: 263 RGEHTKHPKVIYEKAKA 279

PyMOL of 2qv7

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A Length = 304	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Length = 332	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		424
3s40_A		304	Diacylglycerol kinase; structural genomics, the ce	100.0
2qv7_A		337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	100.0
2bon_A		332	Lipid kinase; DAG kinase, transferase; 1.90A {Esch	100.0
2an1_A		292	Putative kinase; structural genomics, PSI, protein	99.23
1yt5_A		258	Inorganic polyphosphate/ATP-NAD kinase; domain 1:	99.2
1u0t_A		307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	99.13
2i2c_A		272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	99.06
3afo_A		388	NADH kinase POS5; alpha/beta+BETA sandwich, ATP-bi	98.27
1z0s_A		278	Probable inorganic polyphosphate/ATP-NAD kinase; A	97.29
3pfn_A		365	NAD kinase; structural genomics consortium, SNP, S	96.38
1o2d_A		371	Alcohol dehydrogenase, iron-containing; TM0920, st	94.04
3ce9_A		354	Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin	93.64
1sg6_A		393	Pentafunctional AROM polypeptide; shikimate pathwa	92.75
1jq5_A		370	Glycerol dehydrogenase; oxidoreductase, NAD, glyce	92.48
3okf_A		390	3-dehydroquinate synthase; structural genomics, ce	92.46
3bfj_A		387	1,3-propanediol oxidoreductase; opportunistic path	92.1
3uhj_A		387	Probable glycerol dehydrogenase; structural genomi	91.91
3ox4_A		383	Alcohol dehydrogenase 2; iron, NAD, oxidoreductase	90.81
1ta9_A		450	Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa	90.76
1vlj_A		407	NADH-dependent butanol dehydrogenase; TM0820, stru	90.51
3ors_A		163	N5-carboxyaminoimidazole ribonucleotide mutase; is	90.34
4grd_A		173	N5-CAIR mutase, phosphoribosylaminoimidazole carbo	89.24
1rrm_A		386	Lactaldehyde reductase; structural genomics, dehyd	89.23
3hl0_A		353	Maleylacetate reductase; structur genomics, PSI-2,	88.51
3qbe_A		368	3-dehydroquinate synthase; shikimate pathway, myco	88.42
1oj7_A		408	Hypothetical oxidoreductase YQHD; structural genom	88.42
3lp6_A		174	Phosphoribosylaminoimidazole carboxylase catalyti;	88.08
3oow_A		166	Phosphoribosylaminoimidazole carboxylase,catalyic;	88.05
3kuu_A		174	Phosphoribosylaminoimidazole carboxylase catalyti	87.67
3jzd_A		358	Iron-containing alcohol dehydrogenase; YP_298327.1	87.66
1kq3_A		376	Glycerol dehydrogenase; structural genomics, joint	87.03
3trh_A		169	Phosphoribosylaminoimidazole carboxylase carboxylt	86.48
2gru_A		368	2-deoxy-scyllo-inosose synthase; aminoglycoside, 2	83.5
1o4v_A		183	Phosphoribosylaminoimidazole mutase PURE; structur	83.12
1xmp_A		170	PURE, phosphoribosylaminoimidazole carboxylase; pu	82.77
1u11_A		182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	81.74
1xah_A		354	Sadhqs, 3-dehydroquinate synthase; shikimate pathw	81.7
4b4k_A		181	N5-carboxyaminoimidazole ribonucleotide mutase; is	81.25
3clh_A		343	3-dehydroquinate synthase; shikimate pathway, arom	80.83
3jy6_A		276	Transcriptional regulator, LACI family; NYSGXRC, P	80.45
3iv7_A		364	Alcohol dehydrogenase IV; NP_602249.1, iron-contai	80.21

>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A	Back alignment and structure

Probab=100.00  E-value=4.9e-47  Score=371.47  Aligned_cols=253  Identities=21%  Similarity=0.311  Sum_probs=204.0

Q ss_pred             CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455          107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL  186 (424)
Q Consensus       107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL  186 (424)
                      .+++|++||+||.||++++.+.+ +++++.|++++++++++.|++++|+.++++++. +++|.||++|||||+|||+|+|
T Consensus         6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l   83 (304)
T 3s40_A            6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL   83 (304)
T ss_dssp             CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence            35789999999999999988878 589999999999999999999999999999986 4899999999999999999999


Q ss_pred             hcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecc
Q 014455          187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI  266 (424)
Q Consensus       187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv  266 (424)
                      +.++     .++|||+||+||+|+||++|    |+|.++.+|+..|.+|+.+++|+++++   .++|.+ ++++||+|++
T Consensus        84 ~~~~-----~~~~l~iiP~Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~---~~~F~~-~~~~G~da~v  150 (304)
T 3s40_A           84 APLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKAN---GQHFLN-FWGIGLVSEV  150 (304)
T ss_dssp             TTCS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEET---TEEESS-EEEEC-----
T ss_pred             hhCC-----CCCcEEEecCCcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEEC---CEEEEE-EEeehHHHHH
Confidence            9853     37999999999999999999    889999999999999999999999996   367765 6999999999


Q ss_pred             cccc--cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 014455          267 DIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV  344 (424)
Q Consensus       267 ~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  344 (424)
                      ....  +.++++|+++|.+++++.+++.+.|+.++.+                                      +|   
T Consensus       151 ~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg---  189 (304)
T 3s40_A          151 SNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITY--------------------------------------DG---  189 (304)
T ss_dssp             -------------CHHHHTTTC------CCEEEEEEE--------------------------------------TT---
T ss_pred             HHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEE--------------------------------------CC---
Confidence            8864  3567899999999999988887777666542                                      11   


Q ss_pred             cCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455          345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS  423 (424)
Q Consensus       345 ~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k  423 (424)
                             +.+++++.+++++|++|+|+++.++|+|+++||+|||+++++.++..++.++..+..|+ ...|.|++++++
T Consensus       190 -------~~~~~~~~~v~v~N~~~~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~  260 (304)
T 3s40_A          190 -------QVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFHVKAK  260 (304)
T ss_dssp             -------EEEEEEEEEEEEECSSEETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEEEEES
T ss_pred             -------EEEEeEEEEEEEECCCcCCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEEEEcc
Confidence                   12456788899999999999999999999999999999999999877766666666666 788999999986

PyMOL of 3s40

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A	Back alignment and structure

>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A	Back alignment and structure

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}	Back alignment and structure

>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}	Back alignment and structure

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A	Back alignment and structure

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*	Back alignment and structure

>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*	Back alignment and structure

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}	Back alignment and structure

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*	Back alignment and structure

>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*	Back alignment and structure

>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*	Back alignment and structure

>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}	Back alignment and structure

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}	Back alignment and structure

>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}	Back alignment and structure

>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*	Back alignment and structure

>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}	Back alignment and structure

>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2	Back alignment and structure

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}	Back alignment and structure

>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}	Back alignment and structure

>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*	Back alignment and structure

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}	Back alignment and structure

>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A	Back alignment and structure

>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2	Back alignment and structure

>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0	Back alignment and structure

>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*	Back alignment and structure

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*	Back alignment and structure

>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}	Back alignment and structure

>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2	Back alignment and structure

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}	Back alignment and structure

>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*	Back alignment and structure

>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1	Back alignment and structure

>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1	Back alignment and structure

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A	Back alignment and structure

>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*	Back alignment and structure

>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}	Back alignment and structure

>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}	Back alignment and structure

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}	Back alignment and structure

>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		424
d2qv7a1		312	e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Sta	7e-28
d2bona1		295	e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia	5e-20

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Length = 312	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

 Score =  110 bits (274), Expect = 7e-28
 Identities = 63/317 (19%), Positives = 112/317 (35%), Gaps = 64/317 (20%)

Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
           KR  I  NP  GK+   +  L D    LE A  + +   T +   A    +      YD 
Sbjct: 3   KRARIIYNPTSGKEQFKRE-LPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDV 61

Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229
           ++   GDG L EVVNG+ E+ +     +  LGV+P GT N   ++    +  P     A+
Sbjct: 62  LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPMGTVNDFGRA----LHIPNDIMGAL 112

Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFYALQ 287
             +I GH   +D+          + + + A G +  +  +  S+    +G         +
Sbjct: 113 DVIIEGHSTKVDI----GKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFE 168

Query: 288 RILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLK 347
            +  ++  + R+ +                                              
Sbjct: 169 MLPQMKAVDLRIEY---------------------------------------------- 182

Query: 348 NLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN 407
             +  +  G  +  +L      +      PDAK  DGY  LII++      L  +++  +
Sbjct: 183 --DGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLAS 240

Query: 408 KGGHVESPYVAYLKVSS 424
           +G H + P V Y K  +
Sbjct: 241 RGEHTKHPKVIYEKAKA 257

PyMOL of d2qv7a1

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Length = 295	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		424
d2qv7a1		312	Diacylglycerol kinase DgkB {Staphylococcus aureus	100.0
d2bona1		295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	100.0
d1u0ta_		302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	97.88
d1z0sa1		249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	96.66
d1o2da_		359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	95.32
d1vlja_		398	NADH-dependent butanol dehydrogenase A (TM0820) {T	94.45
d1kq3a_		364	Glycerol dehydrogenase {Thermotoga maritima [TaxId	93.39
d1qcza_		163	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	93.34
d1jq5a_		366	Glycerol dehydrogenase {Bacillus stearothermophilu	91.87
d1u11a_		159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	90.45
d1xmpa_		155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	88.19
d1edza2		146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	86.83
d1o4va_		169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	86.14
d1rrma_		385	Lactaldehyde reductase FucO {Escherichia coli [Tax	84.1
d2adza1		105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	83.76

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.1e-46  Score=364.43  Aligned_cols=253  Identities=26%  Similarity=0.371  Sum_probs=218.0

Q ss_pred             CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455          109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE  188 (424)
Q Consensus       109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~  188 (424)
                      .||++||+||+||++++.+.+ .++.+.|..++++++++.|++++|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus         2 ~kr~~vi~NP~SG~~~~~~~~-~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTv~~v~~~l~~   80 (312)
T d2qv7a1           2 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE   80 (312)
T ss_dssp             CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred             CceEEEEECcCCCCCcHHHHH-HHHHHHHHHCCCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEcCCcHHHHHHHHHHh
Confidence            589999999999999998878 4788899999999999999999999999999888899999999999999999999998


Q ss_pred             CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccc
Q 014455          189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI  268 (424)
Q Consensus       189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~  268 (424)
                      ++     .++||||||+||||+|||+|    |+|.++.+|+..+.+|+.+++|++.++   .++|.+ ++++|++|++..
T Consensus        81 ~~-----~~~~l~iiP~GTgN~~ar~l----~~~~~~~~al~~~~~~~~~~id~~~v~---~~~f~~-~~~~G~~a~~~~  147 (312)
T d2qv7a1          81 KP-----NRPKLGVIPMGTVNDFGRAL----HIPNDIMGALDVIIEGHSTKVDIGKMN---NRYFIN-LAAGGQLTQVSY  147 (312)
T ss_dssp             CS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHHHTCEEEEEEEEET---TEEESS-EEEEECBCC---
T ss_pred             hc-----cccceEEeecCCCCcchhhc----cccchHHHHHHhhhcCCcEEecccccC---ccceee-eeeeehhhHHHH
Confidence            74     36899999999999999999    889999999999999999999999996   466755 689999999987


Q ss_pred             ccc--ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccC
Q 014455          269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL  346 (424)
Q Consensus       269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  346 (424)
                      ..+  +++++|.++|.+++++.++..+.++.++.+                                      +|     
T Consensus       148 ~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~i~~--------------------------------------dg-----  184 (312)
T d2qv7a1         148 ETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEY--------------------------------------DG-----  184 (312)
T ss_dssp             ----------CGGGSCCCTTTTGGGBCCEEEEEEE--------------------------------------TT-----
T ss_pred             HHHHhhhccccchHHHHHHHHHhhccCceEEEeec--------------------------------------CC-----
Confidence            654  456789999999888888877766665542                                      12     


Q ss_pred             CCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455          347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS  423 (424)
Q Consensus       347 ~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k  423 (424)
                           +++++++.+++++|++++|+++.++|.|.++||.||+++++..+++++++++..+.+|+|.+.|.|.+++++
T Consensus       185 -----~~~~~~~~~~~v~n~~~~ggg~~i~p~a~~~DG~l~v~~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~  256 (312)
T d2qv7a1         185 -----NVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAK  256 (312)
T ss_dssp             -----EEEEEEEEEEEEESSCCCSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEES
T ss_pred             -----cceecceeeeeeecccccCCCCccCCccccccCcceEEEEcCCCHHHHHHHHHHHhcCCcCCCCCEEEEEeC
Confidence                 234667788899999999999999999999999999999999999999999999999999999999999875

PyMOL of d2qv7a1

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}	Back information, alignment and structure

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure