Citrus Sinensis ID: 014458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHccccEEEEEcccc
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccEEEcccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHcHHHHEEccccHHHHHEHHEcccccccc
mwgapaepadsyyevrpectdvpktrfkikpgktlsARKWQaaftpegqldigktlsrihrggihpsirGEVWEFLLgcyepkstfdEREEIRQRRRLQYSAWKEEChqifpvvgsgkfitapvvtedgqpiqdplvlqetnsgisasSSKMVKELLSHGPLDKKVIQWMLTLHQIGldvirtdrtLVFYEKQENLSKLWDILAVYAWVDrdvgycqgmsdlcsPMIILLENEADAFWCFERLMRRLRgnfrctessvgvetQLSNLASItqvidpklhqhletlgggdYLFAFRMLMVLFRREFSFCDSLYLWEMMWALeydphlfylyeeaesaastksegskAKAKSIRQCGKYERenmkngaktseaplPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
mwgapaepadsyyevrpectdvpktrfkikpgktlsarkwqaaftpegqldigktLSRIHRGGIHPSIRGEVWEFLLGCYEPkstfdereeIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESaastksegskakaksIRQCGKYERENMkngaktseaplPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLIShqltylinvqstfvdy
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDereeirqrrrLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYeeaesaastksegskakaksIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
******************CTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTED***************************LLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYE*****************************************LPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFV**
**************************************KWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAES*************************************LPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
***********YYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEA********************CGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
********************************KTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSG***************GPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
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MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQSTFVDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query424 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.537 0.339 0.338 3e-35
Q8TC07691 TBC1 domain family member yes no 0.554 0.340 0.333 4e-34
Q9UUH7743 GTPase-activating protein yes no 0.594 0.339 0.290 1e-29
Q8BYH7645 TBC1 domain family member no no 0.599 0.393 0.319 1e-28
Q9HA65648 TBC1 domain family member no no 0.599 0.391 0.315 2e-27
Q6FWI1745 GTPase-activating protein yes no 0.577 0.328 0.283 7e-27
A1A5B6 742 TBC1 domain family member no no 0.568 0.324 0.304 1e-26
Q6BU76757 GTPase-activating protein yes no 0.629 0.352 0.281 4e-26
Q8TBP0767 TBC1 domain family member no no 0.577 0.319 0.303 2e-24
Q3MII6 688 TBC1 domain family member no no 0.339 0.209 0.38 4e-23
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 145/295 (49%), Gaps = 67/295 (22%)

Query: 35  LSARKWQAAFTPEGQLDIGKTL-SRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIR 93
           +S  +W  +  PEG+L   +++  +I RGG+  S+R + W+FLLG +   ST +ER +++
Sbjct: 300 VSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQ 359

Query: 94  Q-------RRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGIS 146
           +       R +LQ   WK                                        +S
Sbjct: 360 KQKTDEYFRMKLQ---WK---------------------------------------SVS 377

Query: 147 ASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILA 204
            +  K    L  +  L +K             DV RTDRT  FYE Q+N  L  L DIL 
Sbjct: 378 EAQEKRNSRLRDYRSLIEK-------------DVNRTDRTNKFYEGQDNPGLILLHDILM 424

Query: 205 VYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264
            Y   D D+GY QGMSDL SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL
Sbjct: 425 TYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQL 482

Query: 265 SNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWA 319
             L+++ +++D     +LE+   G   F FR L++ F+REFSF D L LWE+MW 
Sbjct: 483 IQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWT 537
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
356543936422 PREDICTED: TBC1 domain family member 15- 0.922 0.926 0.801 0.0
224117458467 predicted protein [Populus trichocarpa] 0.950 0.862 0.792 0.0
449470425444 PREDICTED: GTPase-activating protein gyp 0.943 0.900 0.788 0.0
356549835422 PREDICTED: TBC1 domain family member 15- 0.922 0.926 0.792 0.0
224126335488 predicted protein [Populus trichocarpa] 0.950 0.825 0.76 0.0
255563721413 conserved hypothetical protein [Ricinus 0.882 0.905 0.832 0.0
357452753443 GTPase-activating protein gyp7 [Medicago 0.945 0.905 0.754 0.0
79325285433 RabGAP/TBC domain-containing protein [Ar 0.950 0.930 0.792 0.0
297803390436 rab GTPase activator [Arabidopsis lyrata 0.950 0.924 0.787 0.0
79487043436 RabGAP/TBC domain-containing protein [Ar 0.950 0.924 0.792 0.0
>gi|356543936|ref|XP_003540414.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/404 (80%), Positives = 361/404 (89%), Gaps = 13/404 (3%)

Query: 1   MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
           MW  P  PADS+YE+RPECTDVP TRFKIK GKTLSARKW AAFTPEG LDIGKTLSRI+
Sbjct: 1   MWRDPGVPADSFYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIY 60

Query: 61  RGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFI 120
           RGG+HPSI+GEVWEFLLGCY+PKSTF+ER++IRQRRR+QY+ WKEECHQ+FP+VGSG+F+
Sbjct: 61  RGGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSGRFV 120

Query: 121 TAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDV 180
           TAPV+TEDGQPIQDPLVL+ET+     + +            DK V+QWMLTLHQIGLDV
Sbjct: 121 TAPVITEDGQPIQDPLVLKETSQAKGLAVT------------DKTVVQWMLTLHQIGLDV 168

Query: 181 IRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240
           +RTDRTLVFYEKQENLSKLWDILAVYAW+D+DVGY QGM DLCSPMIILL++EADAFWCF
Sbjct: 169 VRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCF 228

Query: 241 ERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVL 300
           ERLMRRLRGNFRCTESSVGV  QLSNLAS+TQVIDPKLH+HLE LGGGDYLFAFRMLMVL
Sbjct: 229 ERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVL 288

Query: 301 FRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERE 360
           FRREFSFCDSLYLWEMMWALEYDP LF +YE  +S AS K+EGSK K KSIRQCGKYERE
Sbjct: 289 FRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQS-ASEKAEGSKGKTKSIRQCGKYERE 347

Query: 361 NMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKV 404
            +K+GAK +EAPLP+SVFLVASVLKDKS+KLLQEARGLDDVVK+
Sbjct: 348 IVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKI 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117458|ref|XP_002317579.1| predicted protein [Populus trichocarpa] gi|222860644|gb|EEE98191.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470425|ref|XP_004152917.1| PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549835|ref|XP_003543296.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|224126335|ref|XP_002319813.1| predicted protein [Populus trichocarpa] gi|222858189|gb|EEE95736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563721|ref|XP_002522862.1| conserved hypothetical protein [Ricinus communis] gi|223537946|gb|EEF39560.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357452753|ref|XP_003596653.1| GTPase-activating protein gyp7 [Medicago truncatula] gi|355485701|gb|AES66904.1| GTPase-activating protein gyp7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|79325285|ref|NP_001031730.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332659901|gb|AEE85301.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803390|ref|XP_002869579.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gi|297315415|gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79487043|ref|NP_194440.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|23296366|gb|AAN13053.1| unknown protein [Arabidopsis thaliana] gi|332659900|gb|AEE85300.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.948 0.930 0.759 3.2e-168
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.950 0.924 0.747 9.7e-167
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.908 0.908 0.548 4.4e-116
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.908 0.905 0.540 1.2e-115
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.377 0.222 0.546 4.4e-65
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.377 0.214 0.552 1.6e-64
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.285 0.220 0.487 2.2e-43
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.285 0.209 0.463 1e-37
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.325 0.310 0.485 4e-37
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.325 0.205 0.485 4.2e-37
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
 Identities = 307/404 (75%), Positives = 337/404 (83%)

Query:     1 MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
             MWGA AEPADSYY +RPECTDVP T+FKIKPGKTLS RKWQAAFT EG LDIGKTLSRI 
Sbjct:     1 MWGAAAEPADSYYLIRPECTDVPNTKFKIKPGKTLSVRKWQAAFTTEGFLDIGKTLSRIQ 60

Query:    61 RGGIHPSIRGEVWEFLLGCYEPKSTFDXXXXXXXXXXLQYSAWKEECHQIFPVVGSGKFI 120
             RGGIHPSIRGEVWEFLLGCY+PKSTF+          LQY++WKEEC Q+FPV+GSG FI
Sbjct:    61 RGGIHPSIRGEVWEFLLGCYDPKSTFEEREQIRQRRRLQYASWKEECKQMFPVIGSGGFI 120

Query:   121 TAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDV 180
             TAPV+T  G+PI DP+VLQETN G  A+ S   K+L S GPLD+KVIQW+LTLHQIGLDV
Sbjct:   121 TAPVITNKGEPIYDPIVLQETNLG--ANGSDFFKDLASRGPLDQKVIQWLLTLHQIGLDV 178

Query:   181 IRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240
              RTDRTLVFYEK+ENLSKLWDILA+YAW+D DVGYCQGMSDLCSPMI+LLE+EADAFWCF
Sbjct:   179 NRTDRTLVFYEKKENLSKLWDILALYAWIDNDVGYCQGMSDLCSPMIMLLEDEADAFWCF 238

Query:   241 ERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVL 300
             ERLMRRLRGNFR T  SVGVE QL++LASITQ+IDPKLH HLE LGGGDYLFA RM+MV 
Sbjct:   239 ERLMRRLRGNFRDTGRSVGVEAQLTHLASITQIIDPKLHHHLEKLGGGDYLFAIRMIMVQ 298

Query:   301 FRREFSFCDSLYLWEMMWALEYDPHLFYLYXXXXXXXXXXXXXXXXXXXXIRQCGKYERE 360
             FRREFSFCDSLYLWEMMWALEYDP ++ LY                    I QCGKYERE
Sbjct:   299 FRREFSFCDSLYLWEMMWALEYDPEMYSLYEEPQFEGERIEGSSKGKPKSINQCGKYERE 358

Query:   361 NMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKV 404
             NMKNG K++E PLPISVFLVASVLKDKSSKL+ EARGLDDVVK+
Sbjct:   359 NMKNGGKSAEGPLPISVFLVASVLKDKSSKLMTEARGLDDVVKI 402
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00111109
SubName- Full=Putative uncharacterized protein; (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 3e-38
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-36
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 3e-28
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  137 bits (347), Expect = 3e-38
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 155 ELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRD 212
            LL     D K I      HQI  D+ RT     F++ +E      L  +L  YA  + +
Sbjct: 34  RLLKETAPDDKSIV-----HQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPE 88

Query: 213 VGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272
           VGYCQGM+ L +P+++++E+E DAFWC  +LM R   NF       G++  L  L  + +
Sbjct: 89  VGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVK 147

Query: 273 VIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWA 319
             DP L++HL+ LG    L+A R  + LF RE      L +W++++A
Sbjct: 148 EYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFA 194

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 424
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.96
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.95
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.95
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.93
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.89
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.83
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.46
KOG1648813 consensus Uncharacterized conserved protein, conta 99.37
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.33
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 97.86
PF149611296 BROMI: Broad-minded protein 96.84
KOG2224781 consensus Uncharacterized conserved protein, conta 96.11
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 84.37
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-45  Score=334.72  Aligned_cols=295  Identities=25%  Similarity=0.411  Sum_probs=235.5

Q ss_pred             HHHHhcCCC-CCccHHHHHHHHhhCCCC--CCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014458           39 KWQAAFTPE-GQLDIGKTLSRIHRGGIH--PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (424)
Q Consensus        39 ~W~~~~~~~-~~i~~~kll~~~~~~GIp--~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (424)
                      ..++.+.+. ..+|..+ +|..+..|+|  +++|+.+|++|||++|++.  ..|...+.+.|..|..+.++.-.-   .|
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er--~~w~s~La~~R~~Y~q~i~e~v~e---pg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPER--SKWTSFLAKKRSLYKQFIEEIVDE---PG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhh--hhhHHHHHHHHHHHHHHHHHhccC---cc
Confidence            444555543 3378888 7778888999  7899999999999999987  567889999999999998875321   11


Q ss_pred             CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccCh--
Q 014458          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--  193 (424)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~--  193 (424)
                      .  .......+.....-+.|+..                   ...+.|++.+++.+.+.||++||.||.|...+|+..  
T Consensus        85 ~--~~~~~~v~~~D~~~dhPls~-------------------~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~  143 (370)
T KOG4567|consen   85 K--KDNSKKVDSNDTDEDHPLSL-------------------GPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASS  143 (370)
T ss_pred             c--cccccccccCcccccCCCCC-------------------CchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccc
Confidence            1  10000000111111112211                   123458889999999999999999999999988652  


Q ss_pred             -h------------------------hHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhcc----------ChhHHHH
Q 014458          194 -E------------------------NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------NEADAFW  238 (424)
Q Consensus       194 -~------------------------~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~----------~E~~af~  238 (424)
                       +                        ......|||+.||..||.+||+||||+|+||+++|+.          .|+|||+
T Consensus       144 ~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFF  223 (370)
T KOG4567|consen  144 YPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFF  223 (370)
T ss_pred             cccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHH
Confidence             1                        1234578999999999999999999999999999984          3899999


Q ss_pred             HHHHHHHHhhccccCC--CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHH
Q 014458          239 CFERLMRRLRGNFRCT--ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEM  316 (424)
Q Consensus       239 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~  316 (424)
                      ||..||..++++|..+  ++..|+...+..+..+|+++|-+||+||+..++.|++|++||+.++++.+||+++++||||.
T Consensus       224 CF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs  303 (370)
T KOG4567|consen  224 CFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS  303 (370)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH
Confidence            9999999999999754  45568888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCchHHHHHHHHHhhhccccccCcchhHHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 014458          317 MWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEAR  396 (424)
Q Consensus       317 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~  396 (424)
                      +|+..                                                 ...++++++|+||+...|+.|++.  
T Consensus       304 l~sD~-------------------------------------------------~rfd~Ll~iCcsmlil~Re~il~~--  332 (370)
T KOG4567|consen  304 LLSDP-------------------------------------------------QRFDFLLYICCSMLILVRERILEG--  332 (370)
T ss_pred             HhcCh-------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHhc--
Confidence            99952                                                 135699999999999999999954  


Q ss_pred             CchhHHHHHhhhccccccccc
Q 014458          397 GLDDVVKVSLISHQLTYLINV  417 (424)
Q Consensus       397 ~~dd~~~~~~~~~~~~~~~~~  417 (424)
                      +|+.-++++      |+.+++
T Consensus       333 DF~~nmkLL------Q~yp~t  347 (370)
T KOG4567|consen  333 DFTVNMKLL------QNYPTT  347 (370)
T ss_pred             chHHHHHHH------hcCCCC
Confidence            999999998      666554

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 1e-11
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 7e-11
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 3e-09
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 1e-07
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 3e-07
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 8e-06
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 5e-05
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMI---- 227
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 106 TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 165
Query: 228 ------------------------ILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQ 263
                                    + + EAD FWC  +L+ ++  N+       G+  Q
Sbjct: 166 TEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQ 223
Query: 264 LSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWE 315
           + NL+ + + ID  L+ H +        FAFR +  L  REF     + +W+
Sbjct: 224 VKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-52
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 1e-11
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 7e-42
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 1e-07
2qq8_A334 TBC1 domain family member 14; structural genomics 1e-24
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-24
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 6e-21
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 5e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  179 bits (455), Expect = 2e-52
 Identities = 55/272 (20%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDL 222
             +  + + T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL
Sbjct: 77  SDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDL 136

Query: 223 CSPMIILL----------------------------ENEADAFWCFERLMRRLRGNFRCT 254
            +P                                 + EAD FWC  +L+ ++  N+   
Sbjct: 137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--I 194

Query: 255 ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLW 314
               G+  Q+ NL+ + + ID  L+ H +        FAFR +  L  REF     + +W
Sbjct: 195 HGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMW 254

Query: 315 EMMWALEYDPHLFYLY-------------EEAESAASTKSEGSKAKAKSIRQCGKYEREN 361
           +   + E    +   Y              E   A+            +           
Sbjct: 255 DTYLS-ETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAV 313

Query: 362 MKNGAKTSEAPLPISVFLVASVLKDKSSKLLQ 393
             +G     +     VF+ A+ L   S +L++
Sbjct: 314 EDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME 345
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-49  Score=394.88  Aligned_cols=305  Identities=22%  Similarity=0.348  Sum_probs=230.9

Q ss_pred             cHHHHHHhcCCCCCccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014458           36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (424)
Q Consensus        36 ~~~~W~~~~~~~~~i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (424)
                      ..++|.+++.+.+.+|..+ +|.++++|||+.+|+.||++|||++|.+.  ++|+..++++++.|.++++++..-.    
T Consensus         7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~----   79 (396)
T 1fkm_A            7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ----   79 (396)
T ss_dssp             HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS----
T ss_pred             HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence            4578999998866589888 66677899999999999999999999876  4678888999999999998753100    


Q ss_pred             CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccChhh
Q 014458          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN  195 (424)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~  195 (424)
                                                                  .      ....+..+||++||.||+|++++|+.+.+
T Consensus        80 --------------------------------------------~------~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~  109 (396)
T 1fkm_A           80 --------------------------------------------H------SRDIPTWHQIEIDIPRTNPHIPLYQFKSV  109 (396)
T ss_dssp             --------------------------------------------C------STHHHHHHHHHHHGGGSSTTSGGGGSHHH
T ss_pred             --------------------------------------------C------cccHHHHHHHHHHhhhhCCCcccccCchH
Confidence                                                        0      00123678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhcc------------------C----------hhHHHHHHHHHHHHh
Q 014458          196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------N----------EADAFWCFERLMRRL  247 (424)
Q Consensus       196 ~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~------------------~----------E~~af~~~~~l~~~~  247 (424)
                      ++.|.|||.+|+.+||++|||||||+|+|+|++++.                  +          |++|||||++||+++
T Consensus       110 ~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~  189 (396)
T 1fkm_A          110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI  189 (396)
T ss_dssp             HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998752                  1          999999999999999


Q ss_pred             hccccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHH
Q 014458          248 RGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLF  327 (424)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~  327 (424)
                      .++|..  +..|+...+..+..+|+..||+||+||++.|+++.+|+++||+|+|+++||++.++||||.+|++|..-...
T Consensus       190 ~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~  267 (396)
T 1fkm_A          190 TDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTS  267 (396)
T ss_dssp             GGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccc
Confidence            888865  356999999999999999999999999999999999999999999999999999999999999987211000


Q ss_pred             HHHHHHHhhhccccccCcchh-H-HhhhhC----hhhhhhhcCCCCCC---C---------CCCchhhHHHHHHHHHHHH
Q 014458          328 YLYEEAESAASTKSEGSKAKA-K-SIRQCG----KYERENMKNGAKTS---E---------APLPISVFLVASVLKDKSS  389 (424)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~---~---------~~~~~~~~~~~ail~~~r~  389 (424)
                      ..+....      ..+..... + ....++    .+........+..+   +         +..++++|+|+|||...|+
T Consensus       268 ~~~~~~~------~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~  341 (396)
T 1fkm_A          268 SYSMSSN------DIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSD  341 (396)
T ss_dssp             -------------------------------------------------------------CHHHHHHHHHHHHHHHTHH
T ss_pred             hhhhhcc------cccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHH
Confidence            0000000      00000000 0 000000    00000000000000   0         1147999999999999999


Q ss_pred             HHHHHhcCchhHHHHHhh
Q 014458          390 KLLQEARGLDDVVKVSLI  407 (424)
Q Consensus       390 ~il~~~~~~dd~~~~~~~  407 (424)
                      +||+  .++++++++|.+
T Consensus       342 ~Ll~--~df~~~l~~L~~  357 (396)
T 1fkm_A          342 QLME--MDFQETITFLQN  357 (396)
T ss_dssp             HHTT--CCHHHHHHHHTS
T ss_pred             HHHh--cCHHHHHHHHhc
Confidence            9995  589999999844
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 424
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 9e-18
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-05
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-15
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.8 bits (193), Expect = 9e-18
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMII--- 228
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 85  TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 144

Query: 229 -------------------------LLENEADAFWCFERLMRRLRGNF 251
                                    + + EAD FWC  +L+ ++  N+
Sbjct: 145 TEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.73
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=252.30  Aligned_cols=159  Identities=26%  Similarity=0.456  Sum_probs=134.1

Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 014458           37 ARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGS  116 (424)
Q Consensus        37 ~~~W~~~~~~~~~i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~  116 (424)
                      -.+|.+++.+.+.++..+ +|.++++|||+.+|+.||++|||++|.++  ++|+....++++.|...........     
T Consensus         7 i~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~--~~~~~~~~~~~~~y~~~~~~~~~~~-----   78 (194)
T d1fkma1           7 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ-----   78 (194)
T ss_dssp             HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred             HHHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCch--hhHHHHHHHHhhhhhhhhhhhhhcc-----
Confidence            368999998877789988 55677899999999999999999999887  4666777888888988776532100     


Q ss_pred             CcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccChhhH
Q 014458          117 GKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENL  196 (424)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~  196 (424)
                                                                       .....+..++|++||.||+|++++|+.+.++
T Consensus        79 -------------------------------------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~  109 (194)
T d1fkma1          79 -------------------------------------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQ  109 (194)
T ss_dssp             -------------------------------------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSHHHH
T ss_pred             -------------------------------------------------cccchHHHHHHHHHHHhcCCcccccccchhH
Confidence                                                             0011246789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhcc----------------------------ChhHHHHHHHHHHHHhh
Q 014458          197 SKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------------------------NEADAFWCFERLMRRLR  248 (424)
Q Consensus       197 ~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~----------------------------~E~~af~~~~~l~~~~~  248 (424)
                      +.|+|||.+|+.+||++|||||||+|||+|+.++.                            .|+||||||+++|+++.
T Consensus       110 ~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~  189 (194)
T d1fkma1         110 NSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT  189 (194)
T ss_dssp             HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999998762                            28999999999999998


Q ss_pred             cccc
Q 014458          249 GNFR  252 (424)
Q Consensus       249 ~~~~  252 (424)
                      ++|.
T Consensus       190 d~y~  193 (194)
T d1fkma1         190 DNYI  193 (194)
T ss_dssp             GGSS
T ss_pred             ccCC
Confidence            8775
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure