Citrus Sinensis ID: 014460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDER
cccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHHHccEEEEEEcccccccccHHHHcccccEEEEccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccEEEEEEccccccEccccccccccHHHHHHHHHHHHHcHHccEEEEccccccHHHHHHHccHHHHHHHHHccHccHHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHHcccccEEEEEEEEccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHcccccccccccccccccccc
mdtggnslpsgtdgvkrkvcyfydpevgnyyygqghpmkphrIRMTHALLAHYGLLqnmqvlkpfparerdlCRFHADDYVSFLRSITPETQQDQLRQLKrfnvgedcpvfdGLFSFCqtyaggsvggavKLNHGLCdiainwagglhhakkceasgfcyvNDIVLAILELLKQHERVLYVDidihhgdgveeafyttdrvmtvsfhkfgdyfpgtgdirdigyskgkfyslnvplddgiddesyhylFKPIIGKVMEVFRPGAVVLQCgadslsgdrlgcfnlsikGHAECVKFMRSFnvpllllggggytirnvARCWCYETGVAlgvevddkmpqheyyeyfgpdytlhvapsnmenkNSRQLLEEIRNKLLEYLSKlqhapsvqfqerppdselpeadedqedgderwdpdsdmdvdder
mdtggnslpsgtdgvKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQhapsvqfqerppdselpeadedqedgderwdpdsdmdvdder
MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDER
**************VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVA*****************NKLLEYL**********************************************
*******************CYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERP*******************************
***********TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHA****************************************
**************VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQF***********************************
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MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMExxxxxxxxxxxxxxxxxxxxxLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query424 2.2.26 [Sep-21-2011]
O22446501 Histone deacetylase 19 OS yes no 0.971 0.822 0.934 0.0
P56521513 Probable histone deacetyl N/A no 0.983 0.812 0.851 0.0
Q9FML2471 Histone deacetylase 6 OS= no no 0.990 0.891 0.672 1e-172
P56517480 Histone deacetylase 1 OS= yes no 0.908 0.802 0.693 1e-169
O09106482 Histone deacetylase 1 OS= yes no 0.908 0.798 0.688 1e-168
Q4QQW4482 Histone deacetylase 1 OS= yes no 0.908 0.798 0.688 1e-168
Q32PJ8482 Histone deacetylase 1 OS= yes no 0.908 0.798 0.688 1e-168
Q5RAG0482 Histone deacetylase 1 OS= yes no 0.908 0.798 0.685 1e-168
Q13547482 Histone deacetylase 1 OS= yes no 0.908 0.798 0.685 1e-168
O42227480 Probable histone deacetyl N/A no 0.908 0.802 0.675 1e-166
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2 Back     alignment and function desciption
 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/412 (93%), Positives = 399/412 (96%)

Query: 1   MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQ 60
           MDTGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQ
Sbjct: 1   MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ 60

Query: 61  VLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQT 120
           VLKPFPAR+RDLCRFHADDYVSFLRSITPETQQDQ+RQLKRFNVGEDCPVFDGL+SFCQT
Sbjct: 61  VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT 120

Query: 121 YAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180
           YAGGSVGG+VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
Sbjct: 121 YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180

Query: 181 VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGI 240
           VDIDIHHGDGVEEAFY TDRVMTVSFHKFGDYFPGTG I+DIGY  GK+YSLNVPLDDGI
Sbjct: 181 VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI 240

Query: 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
           DDESYH LFKPI+GKVME+FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
Sbjct: 241 DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300

Query: 301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN 360
           VPLLLLGGGGYTIRNVARCWCYETGVALGVEV+DKMP+HEYYEYFGPDYTLHVAPSNMEN
Sbjct: 301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN 360

Query: 361 KNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERW 412
           KNSRQ+LEEIRN LL  LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RW
Sbjct: 361 KNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRW 412
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. HDA19 is involved in jasmonic acid and ethylene signaling of pathogen response.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1 Back     alignment and function description
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1 Back     alignment and function description
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
225428370502 PREDICTED: histone deacetylase 19-like [ 0.997 0.842 0.936 0.0
356551138497 PREDICTED: histone deacetylase 19-like [ 1.0 0.853 0.936 0.0
359488210502 PREDICTED: histone deacetylase 19-like [ 1.0 0.844 0.936 0.0
224131964501 histone deacetylase [Populus trichocarpa 1.0 0.846 0.929 0.0
449444439492 PREDICTED: histone deacetylase 19-like [ 1.0 0.861 0.915 0.0
224104785499 histone deacetylase [Populus trichocarpa 0.971 0.825 0.939 0.0
11066139501 putative histone deacetylase [Arabidopsi 0.971 0.822 0.936 0.0
357467641 1775 Histone deacetylase [Medicago truncatula 1.0 0.238 0.898 0.0
15233694501 histone deacetylase 1/2 [Arabidopsis tha 0.971 0.822 0.934 0.0
297801898500 hypothetical protein ARALYDRAFT_327775 [ 0.971 0.824 0.936 0.0
>gi|225428370|ref|XP_002283371.1| PREDICTED: histone deacetylase 19-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/423 (93%), Positives = 415/423 (98%)

Query: 1   MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQ 60
           MDTGGNSLPSG DGVKRKV YFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQ
Sbjct: 1   MDTGGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ 60

Query: 61  VLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQT 120
           VLKPFPAR+RDLCRFHADDYVSFLR ITPETQQDQLRQLKRFNVGEDCPVFDGL+SFCQT
Sbjct: 61  VLKPFPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT 120

Query: 121 YAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180
           YAGGSVGGAVKLNHGLCDIA+NWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
Sbjct: 121 YAGGSVGGAVKLNHGLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180

Query: 181 VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGI 240
           VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIG+ KGK+YSLNVPLDDGI
Sbjct: 181 VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFGKGKYYSLNVPLDDGI 240

Query: 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
           DDESYH+LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECV++MRSFN
Sbjct: 241 DDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN 300

Query: 301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN 360
           VPLLLLGGGGYTIRNVARCWCYETGVALG+EVDDKMPQHEYYEYFGPDYTLHVAPSNMEN
Sbjct: 301 VPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN 360

Query: 361 KNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDV 420
           KNS Q+L+EIR KLL+ LSKL+HAPSVQFQERPPD+ELPEADED +DGDERWDP+SDM+V
Sbjct: 361 KNSHQILDEIRAKLLDNLSKLRHAPSVQFQERPPDTELPEADEDHDDGDERWDPESDMEV 420

Query: 421 DDE 423
           D+E
Sbjct: 421 DEE 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356551138|ref|XP_003543935.1| PREDICTED: histone deacetylase 19-like [Glycine max] Back     alignment and taxonomy information
>gi|359488210|ref|XP_003633720.1| PREDICTED: histone deacetylase 19-like [Vitis vinifera] gi|296087188|emb|CBI33562.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131964|ref|XP_002328151.1| histone deacetylase [Populus trichocarpa] gi|222837666|gb|EEE76031.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444439|ref|XP_004139982.1| PREDICTED: histone deacetylase 19-like [Cucumis sativus] gi|449475672|ref|XP_004154519.1| PREDICTED: histone deacetylase 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224104785|ref|XP_002313564.1| histone deacetylase [Populus trichocarpa] gi|118486921|gb|ABK95294.1| unknown [Populus trichocarpa] gi|222849972|gb|EEE87519.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|11066139|gb|AAG28474.1|AF195547_1 putative histone deacetylase [Arabidopsis thaliana] gi|2318131|gb|AAB66486.1| histone deacetylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357467641|ref|XP_003604105.1| Histone deacetylase [Medicago truncatula] gi|355493153|gb|AES74356.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|15233694|ref|NP_195526.1| histone deacetylase 1/2 [Arabidopsis thaliana] gi|21431761|sp|O22446.2|HDA19_ARATH RecName: Full=Histone deacetylase 19; Short=AtHD1; Short=HD gi|4467119|emb|CAB37553.1| Histone deacetylase [Arabidopsis thaliana] gi|7270797|emb|CAB80478.1| Histone deacetylase [Arabidopsis thaliana] gi|20260508|gb|AAM13152.1| histone deacetylase [Arabidopsis thaliana] gi|31711912|gb|AAP68312.1| At4g38130 [Arabidopsis thaliana] gi|110740878|dbj|BAE98535.1| Histone deacetylase [Arabidopsis thaliana] gi|332661481|gb|AEE86881.1| histone deacetylase 1/2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297801898|ref|XP_002868833.1| hypothetical protein ARALYDRAFT_327775 [Arabidopsis lyrata subsp. lyrata] gi|297314669|gb|EFH45092.1| hypothetical protein ARALYDRAFT_327775 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
TAIR|locus:2120948501 HD1 "AT4G38130" [Arabidopsis t 1.0 0.846 0.933 8e-227
TAIR|locus:2162017471 HDA6 "histone deacetylase 6" [ 0.995 0.895 0.675 1.5e-161
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.941 0.827 0.681 3.6e-160
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.941 0.827 0.681 3.6e-160
RGD|619975482 Hdac1l "histone deacetylase 1- 0.941 0.827 0.681 3.6e-160
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.971 0.858 0.661 1.6e-159
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.941 0.827 0.676 1.6e-159
UNIPROTKB|E2R692487 HDAC1 "Uncharacterized protein 0.941 0.819 0.677 8.6e-159
UNIPROTKB|F6X8F5483 HDAC1 "Histone deacetylase" [C 0.941 0.826 0.677 8.6e-159
UNIPROTKB|J9NUI0489 HDAC1 "Histone deacetylase" [C 0.941 0.815 0.677 8.6e-159
TAIR|locus:2120948 HD1 "AT4G38130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2189 (775.6 bits), Expect = 8.0e-227, P = 8.0e-227
 Identities = 396/424 (93%), Positives = 411/424 (96%)

Query:     1 MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQ 60
             MDTGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQ
Sbjct:     1 MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ 60

Query:    61 VLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQT 120
             VLKPFPAR+RDLCRFHADDYVSFLRSITPETQQDQ+RQLKRFNVGEDCPVFDGL+SFCQT
Sbjct:    61 VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT 120

Query:   121 YAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180
             YAGGSVGG+VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
Sbjct:   121 YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY 180

Query:   181 VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGI 240
             VDIDIHHGDGVEEAFY TDRVMTVSFHKFGDYFPGTG I+DIGY  GK+YSLNVPLDDGI
Sbjct:   181 VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI 240

Query:   241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
             DDESYH LFKPI+GKVME+FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
Sbjct:   241 DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300

Query:   301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN 360
             VPLLLLGGGGYTIRNVARCWCYETGVALGVEV+DKMP+HEYYEYFGPDYTLHVAPSNMEN
Sbjct:   301 VPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN 360

Query:   361 KNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDV 420
             KNSRQ+LEEIRN LL  LSKLQHAPSV FQERPPD+E PE DEDQEDGD+RWDPDSDMDV
Sbjct:   361 KNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDPDSDMDV 420

Query:   421 DDER 424
             DD+R
Sbjct:   421 DDDR 424
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;IMP
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0016575 "histone deacetylation" evidence=ISS
GO:2000026 "regulation of multicellular organismal development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA
GO:0016573 "histone acetylation" evidence=IDA
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0009405 "pathogenesis" evidence=IMP
TAIR|locus:2162017 HDA6 "histone deacetylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.62290.96220.7831yesno
O42227HDA1B_XENLA3, ., 5, ., 1, ., 9, 80.67530.90800.8020N/Ano
Q6IRL9HDAC3_XENLA3, ., 5, ., 1, ., 9, 80.57470.95750.9485N/Ano
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.61290.94100.8655yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.60150.93630.9802yesno
Q91695HDA1A_XENLA3, ., 5, ., 1, ., 9, 80.68310.90800.8020N/Ano
O22446HDA19_ARATH3, ., 5, ., 1, ., 9, 80.93440.97160.8223yesno
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.68570.90800.7987yesno
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.68830.90800.7987yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.68830.90800.7987yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.68570.90800.7987yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.57470.95750.9485N/Ano
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.68830.90800.7987yesno
P56521HDA19_MAIZE3, ., 5, ., 1, ., 9, 80.85100.98340.8128N/Ano
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.58080.93160.9122yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.69350.90800.8020yesno
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.65520.89620.7676yesno
P56518HDAC1_STRPU3, ., 5, ., 1, ., 9, 80.64490.97160.7152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.979
3rd Layer3.5.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDA903
histone deacetylase (502 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 0.0
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 0.0
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 0.0
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 0.0
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-164
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-143
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 1e-115
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-108
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-106
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 4e-95
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 7e-93
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 8e-93
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-45
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 5e-43
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 3e-40
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 6e-37
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-36
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 3e-33
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 3e-32
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 8e-30
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-26
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 7e-24
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 2e-22
cd10007420 cd10007, HDAC5, Histone deacetylase 5 4e-22
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-21
cd10009379 cd10009, HDAC9, Histone deacetylase 9 5e-21
cd10008378 cd10008, HDAC7, Histone deacetylase 7 1e-20
cd11683337 cd11683, HDAC10, Histone deacetylase 10 6e-19
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 2e-07
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  648 bits (1674), Expect = 0.0
 Identities = 244/381 (64%), Positives = 310/381 (81%), Gaps = 2/381 (0%)

Query: 17  RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFH 76
           ++V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + MQV KP+ A   D+CRFH
Sbjct: 1   KRVAYFYDPDVGNFHYGPGHPMKPHRLALTHSLVLHYGLYKKMQVYKPYRASAHDMCRFH 60

Query: 77  ADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL 136
           ++DY+ FL+ +TP+  Q   + L +FNVG+DCPVF GLF FC  Y G S+ GA KLNH +
Sbjct: 61  SEDYIDFLQRVTPQNIQGFTKSLNQFNVGDDCPVFPGLFDFCSMYTGASLEGATKLNHKI 120

Query: 137 CDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFY 196
           CDIAINW+GGLHHAKK EASGFCYVNDIV+AILELLK H RVLY+DIDIHHGDGV+EAFY
Sbjct: 121 CDIAINWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHPRVLYIDIDIHHGDGVQEAFY 180

Query: 197 TTDRVMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGK 255
            TDRVMTVSFHK+G+Y FPGTGD+ ++G   G++YS+NVPL DGIDD+SY  LFKP+I +
Sbjct: 181 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYSVNVPLKDGIDDQSYLQLFKPVIQQ 240

Query: 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315
           V++ ++P  +VLQCGADSL  DRLGCFNLSIKGH ECV+F++SFN+PLL+LGGGGYT+RN
Sbjct: 241 VIDFYQPTCIVLQCGADSLGCDRLGCFNLSIKGHGECVEFVKSFNIPLLVLGGGGYTVRN 300

Query: 316 VARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLH-VAPSNMENKNSRQLLEEIRNKL 374
           VARCW YET + +  E+ +++P +EY+EYF PD+TLH    + +EN+NS+Q L++IR  +
Sbjct: 301 VARCWTYETSLLVDEEISNELPYNEYFEYFAPDFTLHPDVSTRIENQNSKQYLDQIRQTV 360

Query: 375 LEYLSKLQHAPSVQFQERPPD 395
            E L  L HAPSVQ Q+ PPD
Sbjct: 361 FENLKMLNHAPSVQMQDVPPD 381

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 424
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-123  Score=915.15  Aligned_cols=399  Identities=68%  Similarity=1.217  Sum_probs=382.2

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccch
Q 014460           13 DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ   92 (424)
Q Consensus        13 ~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~   92 (424)
                      +..+++|+|+|+++.+.|+||.+|||+|.|++++++|+..|||.++|++++|..|+.+||.+|||.+||++|++.+|+++
T Consensus         3 ~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~   82 (425)
T KOG1342|consen    3 SLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENM   82 (425)
T ss_pred             CcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHH
Q 014460           93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL  172 (424)
Q Consensus        93 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll  172 (424)
                      .....++++|++++|||+|.++|++|++++||||.||++|+++++++||||+||+|||++++||||||+||||+||+.||
T Consensus        83 ~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLl  162 (425)
T KOG1342|consen   83 ETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELL  162 (425)
T ss_pred             cccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHH
Confidence            77667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHH
Q 014460          173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKP  251 (424)
Q Consensus       173 ~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~-~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~  251 (424)
                      |.++||||||||+|||||||++||.++||+|+|||+|+ .||||||.+.++|.|+|+.|.|||||.+|++|+.|..+|++
T Consensus       163 K~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~p  242 (425)
T KOG1342|consen  163 KYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKP  242 (425)
T ss_pred             HhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999996 69999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCC
Q 014460          252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVE  331 (424)
Q Consensus       252 iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~  331 (424)
                      ||.++++.|+|++||+|||.|++.+|+||+||||++|+++|+++++++++|+++||||||+++||||||||+|++++|+.
T Consensus       243 Ii~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~  322 (425)
T KOG1342|consen  243 IISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQE  322 (425)
T ss_pred             HHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCccceeCCCCCCCCCccccCcCCCCC
Q 014460          332 VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDER  411 (424)
Q Consensus       332 ~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~  411 (424)
                      ++.+||+++||++|+|||+|++.+++++|+|++++|++|++++.+||++++++||||||.+|+......+.+++.+++.|
T Consensus       323 ~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~  402 (425)
T KOG1342|consen  323 LPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLR  402 (425)
T ss_pred             ccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999732111112444555554

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-153
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-147
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 3e-90
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 3e-90
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 3e-90
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 4e-90
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 5e-90
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 7e-90
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 8e-90
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 8e-90
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-89
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 3e-89
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 3e-89
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 3e-89
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 6e-42
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 5e-41
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 4e-20
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 5e-20
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 8e-20
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 8e-20
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 1e-19
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 1e-15
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 1e-15
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 3e-15
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 7e-11
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 4e-10
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  539 bits (1389), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/367 (68%), Positives = 312/367 (85%)
Query: 15  VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCR 74
            K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ +
Sbjct: 1   AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60
Query: 75  FHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNH 134
           +H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN 
Sbjct: 61  YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120
Query: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEA 194
              D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEA
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180
Query: 195 FYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254
           FYTTDRVMTVSFHK+G+YFPGTGD+RDIG  KGK+Y++N P+ DGIDDESY  +FKPII 
Sbjct: 181 FYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240
Query: 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314
           KVME+++P AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +++FN+PLL+LGGGGYTIR
Sbjct: 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIR 300
Query: 315 NVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKL 374
           NVARCW YET VAL  E+ +++P ++Y+EYFGPD+ LH++PSNM N+N+ + +E+I+ +L
Sbjct: 301 NVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRL 360
Query: 375 LEYLSKL 381
            E L  L
Sbjct: 361 FENLRML 367
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 0.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 0.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 3e-50
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 2e-49
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 2e-48
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 6e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  622 bits (1607), Expect = 0.0
 Identities = 154/383 (40%), Positives = 228/383 (59%), Gaps = 4/383 (1%)

Query: 9   PSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPAR 68
                G      Y Y PE  +          P R  M H+L+  Y L + M+++KP  A 
Sbjct: 6   EPADSGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVAS 63

Query: 69  ERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGG 128
             ++  FH D Y+  L+ ++ E   D    +  + +G  CP  +G+F +     G ++  
Sbjct: 64  MEEMATFHTDAYLQHLQKVSQEGDDDHPDSI-EYGLGYLCPATEGIFDYAAAIGGATITA 122

Query: 129 AVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHG 188
           A  L  G+C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHG
Sbjct: 123 AQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHG 182

Query: 189 DGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHY 247
           DGVE+AF  T +VMTVS HKF   +FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+ 
Sbjct: 183 DGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQ 242

Query: 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307
           + + ++ +V + F P AVVLQ GAD+++GD +  FN++  G  +C+K++  + +  L+LG
Sbjct: 243 ICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG 302

Query: 308 GGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLL 367
           GGGY + N ARCW Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +
Sbjct: 303 GGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRI 362

Query: 368 EEIRNKLLEYLSKLQHAPSVQFQ 390
           ++I N +   L  +         
Sbjct: 363 QQILNYIKGNLKHVVIEGRSHHH 385
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 82.63
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.1e-112  Score=860.12  Aligned_cols=373  Identities=62%  Similarity=1.215  Sum_probs=354.4

Q ss_pred             CCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHH
Q 014460           16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ   95 (424)
Q Consensus        16 ~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~   95 (424)
                      |+||+|+|||+|+.|.++++|||+|.|+++++++|+++|+++.+++++|++|+.++|++|||++||++|++.++....+.
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF   81 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999876554332


Q ss_pred             HHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhcC
Q 014460           96 LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH  175 (424)
Q Consensus        96 ~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~~  175 (424)
                      .+....++++.|||+++++|++|++++||+|.||++|++|++++|+||+||+|||++++|+||||||||||||++|++.+
T Consensus        82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~  161 (376)
T 4a69_A           82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH  161 (376)
T ss_dssp             HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred             hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence            33456788999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CcEEEEEccCcCCcccccccccCCCeEEEecCCCCC-CCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 014460          176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG  254 (424)
Q Consensus       176 ~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~-fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~  254 (424)
                      +||||||||||||||||+|||+||+|||+|||+++. ||||||..+|+|.|+|+|+++|||||+|++|++|+.+|+++|.
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~  241 (376)
T 4a69_A          162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN  241 (376)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999965 8999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCC
Q 014460          255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD  334 (424)
Q Consensus       255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~  334 (424)
                      |++++|+||+||||||||+|.+||||.|+||++||++|++.++++++|+++++||||++++++|||+++|++++|.++++
T Consensus       242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~  321 (376)
T 4a69_A          242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE  321 (376)
T ss_dssp             HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhcCCCCcCccC-CCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCcc
Q 014460          335 KMPQHEYYEYFGPDYTLHVA-PSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQ  388 (424)
Q Consensus       335 ~~P~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~sv~  388 (424)
                      ++|.++|+++|+|+|+|++. +++|+|+|+++||++|++++.+||++++++||||
T Consensus       322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999998 8999999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 424
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-108
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 2e-86
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 7e-61
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  322 bits (827), Expect = e-108
 Identities = 154/362 (42%), Positives = 227/362 (62%), Gaps = 4/362 (1%)

Query: 21  YFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDY 80
           Y Y PE  +          P R  M H+L+  Y L + M+++KP  A   ++  FH D Y
Sbjct: 5   YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 81  VSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIA 140
           +  L+ ++ E   D    +  + +G DCP  +G+F +     G ++  A  L  G+C +A
Sbjct: 63  LQHLQKVSQEGDDDHPDSI-EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 141 INWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDR 200
           INW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHGDGVE+AF  T +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 201 VMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEV 259
           VMTVS HKF    FPGTGD+ D+G  KG++YS+NVP+ DGI DE Y+ + + ++ +V + 
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 260 FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARC 319
           F P AVVLQ GAD+++GD +  FN++  G  +C+K++  + +  L+LGGGGY + N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301

Query: 320 WCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLS 379
           W Y TGV LG  +  ++P HE++  +GPDY L + PS   ++N    +++I N +   L 
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 361

Query: 380 KL 381
            +
Sbjct: 362 HV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-102  Score=788.21  Aligned_cols=359  Identities=43%  Similarity=0.868  Sum_probs=341.1

Q ss_pred             EEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHHHHhh
Q 014460           20 CYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQL   99 (424)
Q Consensus        20 ~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~   99 (424)
                      .|||||+|..+  ++.|||+|.|+++++++|+++||++++++++|++|+.++|++|||++||++|++.+++..... ...
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~-~~~   80 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH-PDS   80 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC-TTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc-chh
Confidence            57999999765  688999999999999999999999999999999999999999999999999998654322110 113


Q ss_pred             hhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhcCCcEE
Q 014460          100 KRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVL  179 (424)
Q Consensus       100 ~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~~~RVl  179 (424)
                      .+|+++.|||+++++|+++++++|+++.|++.+++|+.++|+||+||+|||++++|+||||||||||||+++++..+||+
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             eeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEEccCcCCcccccccccCCCeEEEecCCC-CCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHHHHHH
Q 014460          180 YVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVME  258 (424)
Q Consensus       180 ivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~-~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~p~~~  258 (424)
                      |||||||||||||+||++||+|+|+|||++ ..||||||..+++|.|.|+++++|||||+|++|++|+.+|+++|.|+++
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~  240 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ  240 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhh
Confidence            999999999999999999999999999999 4599999999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCCCCCc
Q 014460          259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQ  338 (424)
Q Consensus       259 ~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~~~P~  338 (424)
                      +|+||+||||||||+|.+||||+|+||++||++|+++++++++|+++++|||||+.++||||+++|++++|++++++||+
T Consensus       241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~  320 (364)
T d1t64a_         241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD  320 (364)
T ss_dssp             HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred             cCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcC
Q 014460          339 HEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL  381 (424)
Q Consensus       339 ~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l  381 (424)
                      |+||++|+|+|++++.+++++|+|++++|++|++.|.+|||.+
T Consensus       321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             chhhhhcCCCcccccCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999976
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure