Citrus Sinensis ID: 014463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccEEcccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccEEEccccccHHHHHHHHHHccccccccccEEccccccccccccEEEcccccccccccccccccccEEEEcccccccHHHHHHHHHcccEEEcccccccccEEEHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccHHHHHHcccccEEEEEEEEEEcccccEEEEEEEEEEEEcccccEEccEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHccHHHHHHHHHHHHHHcHHHcEcccEEccEcccccHHHHHHHHHHHHHHHcccccEEccccEEEEcHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHccccEEEEEEEccEEEEccccccHHHHHHHHHHHcccccccccEEEcHHHHHcccccEEEEccccccEcHHHHccccccEEEccccccEcHHHHHHHHHcccEEEcHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mnaltatnRNFRYAARILGLDSklersllipfreikvecsipkddgslaTFVGFRiqhdnargpmkggiryhpevdpdEVNALAQLMTWKTAVAAipyggakggigcnprelsMSELERLTRVFTQKIHDLigihrdvpapdmgtnsQTMAWILDEYskfhghspavvtgkpivsikretekqrnkndlggslgreaatgLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFhehggkvvavsditgaiknpngidvpALLKYKksnkslndfqggnamdlndllvhecdvlvpcalggvlnkenaaDVKAKFIIEaanhptdpeadeilskkgvvilpdiyansggvtVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Flexible Loop (DISEMBL)
mnaltatnrnfryaarilgldsklerSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGihrdvpapdmGTNSQTMAWILDEYSKFHghspavvtgkpivsikretekqrnkndlggslgREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAanhptdpeadEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Low Complexity Region (SEG)
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAllkykksnkslnDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Disordered region (IsUnstruct)
********RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIV*********************EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANH******DEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLR***
Disordered Region (DISOPRED)
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW*
Disordered Region (DISEMBL)
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Disordered Region (DISPRO)
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q38946	411	Glutamate dehydrogenase 2	yes	no	0.966	0.997	0.816	0.0
P52596	411	Glutamate dehydrogenase O	yes	no	0.966	0.997	0.801	0.0
O04937	411	Glutamate dehydrogenase A	N/A	no	0.966	0.997	0.792	0.0
Q43314	411	Glutamate dehydrogenase 1	no	no	0.964	0.995	0.791	0.0
Q9LEC8	411	Glutamate dehydrogenase B	N/A	no	0.966	0.997	0.775	0.0
Q9S7A0	411	Probable glutamate dehydr	no	no	0.964	0.995	0.775	0.0
P93541	412	Glutamate dehydrogenase O	N/A	no	0.966	0.995	0.774	0.0
Q43260	411	Glutamate dehydrogenase O	N/A	no	0.966	0.997	0.757	0.0
Q7A1B9	414	NAD-specific glutamate de	yes	no	0.957	0.980	0.429	1e-104
Q6GAW8	414	NAD-specific glutamate de	yes	no	0.957	0.980	0.429	1e-104

>sp|Q38946|DHE2_ARATH Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/424 (81%), Positives = 383/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+A+RILGLDSK+ERSL+IPFREIKVEC+IPKDDG+L +++GFR+QHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+PR+LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAE+GKSI  + F IQGFGNVG+WAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGAI+NP GID+ AL+K+K +  SLNDF GG+AM+ ++LL+HECDVL+
Sbjct: 227 EKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENA DVKAKFI+EAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN EL++YM  AF +IKTMC TH+CNLRMGAFTLGVNRVA+AT L
Sbjct: 347 EWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 3

>sp|P52596|DHE3_VITVI Glutamate dehydrogenase OS=Vitis vinifera GN=GDH PE=2 SV=1

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/424 (80%), Positives = 372/424 (87%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+A+RILGLDSKLE+SLLIPFREIKVEC+IPKDDGSLAT+VGFR+QHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKLEKSLLIPFREIKVECTIPKDDGSLATYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAV  IPYGGAKGGIGC P++LSMSELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAKGGIGCTPKDLSMSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIG H DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGTHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIA------ 174

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                   LGGSLGREAATG GV FATEALLA+HGKSI  + F IQGFGNVGSW A+   
Sbjct: 175 --------LGGSLGREAATGRGVVFATEALLAQHGKSIKGLTFVIQGFGNVGSWVARLIG 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGK++AVSD+TGA+KN NG+D+  LL++K+    L +F GG+ MD N+LL HECDVL+
Sbjct: 227 ERGGKIIAVSDVTGAVKNQNGLDIVDLLRHKEETGCLTNFSGGDHMDPNELLTHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG VILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGGVILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN+EL++YM  AF +IK MCQ+HNC+LRMGAFTL VNRVA AT L
Sbjct: 347 EWVQNIQGFMWEEEKVNNELQKYMTKAFHNIKAMCQSHNCSLRMGAFTLAVNRVACATTL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|O04937|DHEA_NICPL Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/424 (79%), Positives = 378/424 (89%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR AARILGLDSKLE+SLLIPFREIKVEC+IPKDDG+L ++VGFR+QHDN
Sbjct: 1   MNALAATNRNFRQAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVD DEVNALAQLMTWKTAVA IPYGGAKGGIGC P++LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDLDEVNALAQLMTWKTAVADIPYGGAKGGIGCKPKDLSKSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGI+ DVPAPDMGTN+QTMAWILDEYSKFHGHSPA+VTGKPI       
Sbjct: 121 TRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAIVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV +ATEALLAE+GK+I ++ FAIQGFGNVG+WAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVYATEALLAEYGKNIKDLTFAIQGFGNVGAWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+AVSDITGA+KNPNG+D+PALL +K++   L DF GG+ M+ +++L HECDVL+
Sbjct: 227 ERGGKVIAVSDITGAVKNPNGLDIPALLNHKEATGKLIDFSGGDVMNSDEVLTHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENA +VKAKFIIEAANHPTDPEADEIL KKG+VILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNRENADNVKAKFIIEAANHPTDPEADEILCKKGIVILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN EL++YM  AF ++K MCQ+HNC+LRMGAFTLGVNRVA+AT L
Sbjct: 347 EWVQNIQGFMWDEEKVNRELRKYMTKAFHNLKNMCQSHNCSLRMGAFTLGVNRVARATTL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q43314|DHE1_ARATH Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/423 (79%), Positives = 372/423 (87%), Gaps = 14/423 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ AAR+LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct: 1   MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P +LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGT  QTMAWILDEYSKFHG+SPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG GV F TEALL EHGK+IS  +F IQGFGNVGSWAAK   
Sbjct: 174 -------DLGGSLGRDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLIS 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGK+VAVSDITGAIKN +GID+PALLK+ K ++ +  F G + +D N +LV +CD+LV
Sbjct: 227 EKGGKIVAVSDITGAIKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILV 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P ALGGV+N+ENA ++KAKFIIEAANHPTDP+ADEILSKKGVVILPDIYANSGGVTVSYF
Sbjct: 287 PAALGGVINRENANEIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN ELK YM  +FKD+K MC+TH+C+LRMGAFTLGVNRVAQAT+L
Sbjct: 347 EWVQNIQGFMWEEEKVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVAQATIL 406

Query: 421 RGW 423
           RGW
Sbjct: 407 RGW 409

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9LEC8|DHEB_NICPL Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/424 (77%), Positives = 371/424 (87%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ A+R+LGLDSKLE+ LLIPFREIKVEC+IPKDDGSLATF+GFR+QHDN
Sbjct: 1   MNALAATNRNFKLASRLLGLDSKLEQCLLIPFREIKVECTIPKDDGSLATFIGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P +LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIG+H DVPAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG GV FA EALL +HGKSI+  +F +QGFGNVGSWAA+   
Sbjct: 174 -------DLGGSLGRDAATGRGVLFAAEALLRDHGKSIAGQRFVVQGFGNVGSWAAQLIT 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGK+VAVSDITGAIKN NGID+ +LLK+ K N+ +  F G +++D N +LV +CDVL+
Sbjct: 227 EQGGKIVAVSDITGAIKNKNGIDIASLLKHVKENRGVKGFHGADSIDPNSILVEDCDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P ALGGV+N++NA D+KAKFI+EAANHPTDPEADEIL+KKGVVILPDIYANSGGVTVSYF
Sbjct: 287 PAALGGVINRDNAKDIKAKFIVEAANHPTDPEADEILAKKGVVILPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EE+VN ELK YM   FKD+K MC+THNC+LRMGAFTLGVNRVA+AT L
Sbjct: 347 EWVQNIQGFMWDEERVNTELKAYMNRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATTL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Nicotiana plumbaginifolia (taxid: 4092)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9S7A0|DHE3_ARATH Probable glutamate dehydrogenase 3 OS=Arabidopsis thaliana GN=GSH3 PE=1 SV=1

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/423 (77%), Positives = 370/423 (87%), Gaps = 14/423 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ A+R+LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct: 1   MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEV+PDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P ELS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGT  QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG GV FATEALL EHGK+IS  +FAIQGFGNVGSWAAK   
Sbjct: 174 -------DLGGSLGRDAATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLIS 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           + GGK+VAVSD+TGAIKN NGID+ +LL++ + N+ +  F G +++D + +LV +CD+LV
Sbjct: 227 DKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKGFDGADSIDPDSILVEDCDILV 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P ALGGV+N+ENA ++KAKFIIE ANHPTDPEADEIL KKGV+ILPDIYANSGGVTVSYF
Sbjct: 287 PAALGGVINRENANEIKAKFIIEGANHPTDPEADEILKKKGVMILPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN ELK YM   FKD+K MCQTH+C+LRMGAFTLG+NRVAQAT +
Sbjct: 347 EWVQNIQGFMWDEEKVNRELKTYMTRGFKDLKEMCQTHSCDLRMGAFTLGINRVAQATTI 406

Query: 421 RGW 423
           RGW
Sbjct: 407 RGW 409

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P93541|DHE3_SOLLC Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1 PE=2 SV=1

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/425 (77%), Positives = 365/425 (85%), Gaps = 15/425 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ AAR+LGLDSKLE SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct: 1   MNALAATNRNFKLAARLLGLDSKLELSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P +LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKP+       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPV------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG G  FATEALL EHGKS++  +F IQGFGNVGSWAAK  H
Sbjct: 174 -------DLGGSLGRDAATGRGALFATEALLNEHGKSVAGQRFVIQGFGNVGSWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGAIKN  GID+ +L K+ K  + +  F   + +D N +LV +CDVL+
Sbjct: 227 EQGGKVVAVSDITGAIKNEKGIDIESLFKHVKETRGVKGFHDAHPIDANSILVEDCDVLI 286

Query: 301 PCALGGVLNKEN-AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           P ALGGV+NK+N    +KAK+IIEAANHPTDPEADEILSKKGV ILPDIYANSGGVTVSY
Sbjct: 287 PAALGGVINKDNHKLKIKAKYIIEAANHPTDPEADEILSKKGVTILPDIYANSGGVTVSY 346

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQNIQGFMW+E+KVN ELK YM   FKD+K MC+THNC+LRMGAFTLGVNRVA+AT+
Sbjct: 347 FEWVQNIQGFMWDEKKVNDELKTYMTRGFKDVKDMCKTHNCDLRMGAFTLGVNRVARATV 406

Query: 420 LRGWE 424
           LRGWE
Sbjct: 407 LRGWE 411

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q43260|DHE3_MAIZE Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 SV=1

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/424 (75%), Positives = 371/424 (87%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL AT+RNF+ AA++LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA++VGFR+QHDN
Sbjct: 1   MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P +LS+SELERL
Sbjct: 61  ARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTNSQTMAWILDEYSKFHG+SPAVVTGKP+       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPV------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG GV FATEALLAEHGK I+  +F IQGFGNVGSWAA+   
Sbjct: 174 -------DLGGSLGRDAATGRGVLFATEALLAEHGKGIAGQRFVIQGFGNVGSWAAQLIS 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+A+SD+TGA+KN +G+D+  L+K+   NK +  F+GG+A+  + LL  ECDVL+
Sbjct: 227 EAGGKVIAISDVTGAVKNVDGLDIAQLVKHSAENKGIKGFKGGDAIAPDSLLTEECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P ALGGV+NK+NA D+KAK+IIEAANHPTDPEADEILSKKGV+ILPDI ANSGGVTVSYF
Sbjct: 287 PAALGGVINKDNANDIKAKYIIEAANHPTDPEADEILSKKGVLILPDILANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN EL+ Y+  AF ++K MC++H+C+LRMGAFTLGVNRVA+AT+L
Sbjct: 347 EWVQNIQGFMWDEEKVNAELRTYITRAFGNVKQMCRSHSCDLRMGAFTLGVNRVARATVL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7A1B9|DHE2_STAAW NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=gluD PE=3 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 269/424 (63%), Gaps = 18/424 (4%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct: 6   NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
            GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct: 66  VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
           R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct: 126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                   LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct: 180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL-NDFQGGNAMDLNDLLVHECDVL 299
           + G K+V +SD  GA+ +PNG+D+  LL  + S  ++ N F+    +   +L   +CD+L
Sbjct: 232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct: 290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct: 350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query: 420 LRGW 423
            RGW
Sbjct: 410 YRGW 413

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q6GAW8|DHE2_STAAS NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=gluD PE=3 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/424 (42%), Positives = 269/424 (63%), Gaps = 18/424 (4%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct: 6   NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
            GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct: 66  VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
           R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct: 126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                   LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct: 180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL-NDFQGGNAMDLNDLLVHECDVL 299
           + G K+V +SD  GA+ +PNG+D+  LL  + S  ++ N F+    +   +L   +CD+L
Sbjct: 232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct: 290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct: 350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query: 420 LRGW 423
            RGW
Sbjct: 410 YRGW 413

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
224134280	411	predicted protein [Populus trichocarpa]	0.966	0.997	0.820	0.0
357482209	411	Glutamate dehydrogenase [Medicago trunca	0.966	0.997	0.834	0.0
356497088	411	PREDICTED: glutamate dehydrogenase 2-lik	0.966	0.997	0.827	0.0
255539945	411	glutamate dehydrogenase, putative [Ricin	0.966	0.997	0.818	0.0
449458315	411	PREDICTED: glutamate dehydrogenase 2-lik	0.966	0.997	0.832	0.0
356510923	412	PREDICTED: glutamate dehydrogenase 2-lik	0.966	0.995	0.828	0.0
15240793	411	glutamate dehydrogenase 2 [Arabidopsis t	0.966	0.997	0.816	0.0
224114668	411	predicted protein [Populus trichocarpa]	0.966	0.997	0.808	0.0
15004984	411	glutamate dehydrogenase [Brassica napus]	0.966	0.997	0.808	0.0
449451836	411	PREDICTED: glutamate dehydrogenase 2-lik	0.966	0.997	0.811	0.0

>gi|224134280|ref|XP_002321781.1| predicted protein [Populus trichocarpa] gi|222868777|gb|EEF05908.1| predicted protein [Populus trichocarpa]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/424 (82%), Positives = 385/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+AARILGLDSK+E+SLLIPFREIKVEC+IPKDDG+LA+++GFR+QHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKVEKSLLIPFREIKVECTIPKDDGTLASYIGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWK+AVA IPYGGAKGGIGCNP +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCNPGDLSKSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIG+H DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAEHGKSI  + FA+QGFGNVGSWAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEHGKSIKGLTFAVQGFGNVGSWAAKIIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+AVSDI+GA+KNPNGID+P L+++K+S  SL +FQGG++MD N+LLVHECDVL+
Sbjct: 227 ERGGKVIAVSDISGAVKNPNGIDIPELIRHKESTGSLKNFQGGDSMDANELLVHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENAADVKAKFIIEAANHPTDPEADEIL+KKGVV+LPDIYANSGGVTVSYF
Sbjct: 287 PCALGGVLNRENAADVKAKFIIEAANHPTDPEADEILAKKGVVVLPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EE+VN  L+ YM  AF +IK MCQTH+CNLRMGAFTLGVNRVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEEQVNKTLQNYMTRAFHNIKVMCQTHDCNLRMGAFTLGVNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482209|ref|XP_003611390.1| Glutamate dehydrogenase [Medicago truncatula] gi|355512725|gb|AES94348.1| Glutamate dehydrogenase [Medicago truncatula]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/424 (83%), Positives = 382/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ A+RILGLDSKLE+SLLIP+REIKVEC+IPKDDGSL ++VGFRIQHDN
Sbjct: 1   MNALVATNRNFQRASRILGLDSKLEKSLLIPYREIKVECTIPKDDGSLVSYVGFRIQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAV  IPYGGAKGGIGCNP++LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAKGGIGCNPKDLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATGLGV FATEAL AE+GKSIS+M FAIQGFGNVG+WAAK   
Sbjct: 174 -------DLGGSLGREAATGLGVVFATEALFAEYGKSISDMTFAIQGFGNVGTWAAKAIF 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDI GAI NPNGID+ ALLK+K  N SL DF GG+AM+ NDLLVH+CDVL+
Sbjct: 227 ERGGKVVAVSDINGAISNPNGIDIAALLKHKAGNGSLKDFSGGDAMNPNDLLVHDCDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENA DVKAKFIIEAANHPTDP+ADEILSKKGV+ILPD+YAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENANDVKAKFIIEAANHPTDPDADEILSKKGVIILPDVYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN ELKRYM  AF DIK  C+THNC+LRMGAFTLG+NRVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEEKVNQELKRYMTKAFNDIKANCKTHNCDLRMGAFTLGLNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497088|ref|XP_003517396.1| PREDICTED: glutamate dehydrogenase 2-like [Glycine max]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/424 (82%), Positives = 384/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR AA ILGLD+KLE SLLIPFREIKVEC+IPKDDG+L ++VGFRIQHDN
Sbjct: 1   MNALAATNRNFRRAAHILGLDTKLENSLLIPFREIKVECTIPKDDGTLVSYVGFRIQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGCNPR+LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSVSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGI RDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIQRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATGLGV FATEAL AE+GKSIS+M F IQGFGNVG+WAAK  +
Sbjct: 174 -------DLGGSLGREAATGLGVIFATEALFAEYGKSISDMTFVIQGFGNVGTWAAKSIY 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+AVSDI+GAI+NPNGID+PALLK+K+ N +L +F G + MD ++LLVHECDVL+
Sbjct: 227 ERGGKVIAVSDISGAIRNPNGIDIPALLKHKEGNGNLKEFSGADIMDPDELLVHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENAADVKAKFIIEAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENAADVKAKFIIEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN ELK+YM  AF++IK MCQ HNC+LRMGAF+LGVNRVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEEKVNRELKKYMTKAFRNIKAMCQIHNCDLRMGAFSLGVNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539945|ref|XP_002511037.1| glutamate dehydrogenase, putative [Ricinus communis] gi|223550152|gb|EEF51639.1| glutamate dehydrogenase, putative [Ricinus communis]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/424 (81%), Positives = 382/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+AARILGLDSK+ERSL+IPFREIKVEC+IPKDDG+L ++VGFR+QHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKVERSLMIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIR+HPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGCNPR+LS SELERL
Sbjct: 61  ARGPMKGGIRFHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSRSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKP+       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPL------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAE+GK I  + F IQGFGNVGSWAA+  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEYGKFIEGLTFVIQGFGNVGSWAARLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+AVSD+TGA+KNP GID+P LL++K S  SL +F GG+ MD N+LLVHECDVL+
Sbjct: 227 ERGGKVIAVSDVTGAVKNPKGIDIPELLRHKDSTNSLTNFHGGDPMDPNELLVHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENAADVKAKFI+EAANHPTDPEADEILSKKGVVILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNRENAADVKAKFIVEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEE+VN EL+RYM  AF++IK MC+TH+CNLRMGAFTLGVNRVA+ATLL
Sbjct: 347 EWVQNIQGFMWEEEQVNKELQRYMTRAFQNIKNMCKTHDCNLRMGAFTLGVNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458315|ref|XP_004146893.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus] gi|449528457|ref|XP_004171221.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/424 (83%), Positives = 379/424 (89%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+AARILGLDSKLE+SLLIPFREIKVEC+IPKDDGSL ++VGFR+QHDN
Sbjct: 1   MNALQATNRNFRHAARILGLDSKLEKSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGCNPRELS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRELSNSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAEHGK I NM FAIQGFGNVG WA+K  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEHGKQIKNMTFAIQGFGNVGYWASKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGA+ NPNGID+  L K+K+S  SL +FQG + MD N+LLVH+CDVL+
Sbjct: 227 EKGGKVVAVSDITGAVTNPNGIDIQELYKHKESTGSLVNFQGADDMDPNELLVHDCDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENA  VKAKFIIEAANHPTDPEADEILSKKGVVILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNRENAGSVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+E+KVN EL+RYM  AF +IK MC+TH+CNLRMGAFTLGVNRVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEDKVNTELQRYMTRAFHNIKNMCKTHDCNLRMGAFTLGVNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510923|ref|XP_003524183.1| PREDICTED: glutamate dehydrogenase 2-like [Glycine max]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/425 (82%), Positives = 382/425 (89%), Gaps = 15/425 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNF+ AARILGLDSKLE+SLLIPFRE+KVEC+IPKDDG+L ++VGFRIQHDN
Sbjct: 1   MNALAATNRNFQRAARILGLDSKLEKSLLIPFREVKVECTIPKDDGTLVSYVGFRIQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGCNPR+LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSISELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGI RDVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIQRDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATGLGV FATEAL AE+GKSIS+  F IQGFGNVG+WAAK   
Sbjct: 174 -------DLGGSLGREAATGLGVVFATEALFAEYGKSISDHTFIIQGFGNVGTWAAKSIF 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS-LNDFQGGNAMDLNDLLVHECDVL 299
           E GGKV+AVSDI+GAIKNPNGID+PALLK+K  N   L DF G  AMD N+LL+HECDVL
Sbjct: 227 ERGGKVIAVSDISGAIKNPNGIDIPALLKHKDGNGGVLKDFPGAEAMDPNELLLHECDVL 286

Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           +PCALGGVLNKENA DVKAKF+IEAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSY
Sbjct: 287 IPCALGGVLNKENAVDVKAKFVIEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSY 346

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQNIQGFMWEEEKVNHELK+YM  +F+DIK MC+ HNC+LRMGAFTLGVNRVA+ATL
Sbjct: 347 FEWVQNIQGFMWEEEKVNHELKKYMTRSFRDIKAMCKIHNCDLRMGAFTLGVNRVARATL 406

Query: 420 LRGWE 424
           LRGWE
Sbjct: 407 LRGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240793|ref|NP_196361.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|186521018|ref|NP_001119183.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|297806777|ref|XP_002871272.1| hypothetical protein ARALYDRAFT_487575 [Arabidopsis lyrata subsp. lyrata] gi|12229806|sp|Q38946.1|DHE2_ARATH RecName: Full=Glutamate dehydrogenase 2; Short=GDH 2 gi|1336084|gb|AAB01222.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|7576182|emb|CAB87933.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|297317109|gb|EFH47531.1| hypothetical protein ARALYDRAFT_487575 [Arabidopsis lyrata subsp. lyrata] gi|332003774|gb|AED91157.1| glutamate dehydrogenase 2 [Arabidopsis thaliana] gi|332003775|gb|AED91158.1| glutamate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/424 (81%), Positives = 383/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+A+RILGLDSK+ERSL+IPFREIKVEC+IPKDDG+L +++GFR+QHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+PR+LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAE+GKSI  + F IQGFGNVG+WAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGAI+NP GID+ AL+K+K +  SLNDF GG+AM+ ++LL+HECDVL+
Sbjct: 227 EKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENA DVKAKFI+EAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN EL++YM  AF +IKTMC TH+CNLRMGAFTLGVNRVA+AT L
Sbjct: 347 EWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114668|ref|XP_002339508.1| predicted protein [Populus trichocarpa] gi|222832584|gb|EEE71061.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/424 (80%), Positives = 385/424 (90%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL AT+RNFR+A+R+LGLDSK+E+SLLIPFREIKVEC+IPKDDG+L ++VGFR+QHDN
Sbjct: 1   MNALAATSRNFRHASRLLGLDSKVEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWK+AVA IPYGGAKGGIGCNP +LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCNPGDLSKSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIG+H DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGVHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAEHGKSI ++ FAIQGFGNVGSWAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEHGKSIKDLTFAIQGFGNVGSWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKV+AVSDITGA+KNPNGID+P LL++K++  SL DFQG  +MD N+LL+H+CDVL+
Sbjct: 227 ERGGKVIAVSDITGAVKNPNGIDIPELLRHKETTGSLKDFQGAESMDANELLIHKCDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENAADVKAKFIIEAANHPTDPEADEIL+KKGVV+LPDIYANSGGVTVSYF
Sbjct: 287 PCALGGVLNRENAADVKAKFIIEAANHPTDPEADEILAKKGVVVLPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+E++VN+ L+ YM  AF +IK+MCQTH+CNLRMGAFTLGV+RVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEQQVNNTLQNYMTRAFHNIKSMCQTHDCNLRMGAFTLGVSRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15004984|dbj|BAB62170.1| glutamate dehydrogenase [Brassica napus] gi|77019565|dbj|BAE45943.1| glutamate dehydrogenase 2 [Brassica napus]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/424 (80%), Positives = 381/424 (89%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+A+RILGLDSK+E+SL+IPFREIKVEC+IPKDDG+L ++VGFR+QHDN
Sbjct: 1   MNALAATNRNFRHASRILGLDSKIEKSLMIPFREIKVECTIPKDDGTLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGCNPR+LS+SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCNPRDLSLSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           T VFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct: 121 THVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV +ATEALLAE+GKSI  + F +QGFGNVG+WAAK  H
Sbjct: 174 -------DLGGSLGREAATGRGVVYATEALLAEYGKSIKGLTFVVQGFGNVGTWAAKLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGA++NP G+D+ ALL +K++  SL DF GG+AMD N+LL+HECDVL+
Sbjct: 227 EKGGKVVAVSDITGAVRNPEGLDIDALLSHKEATGSLVDFSGGDAMDSNELLIHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLNKENA DVKAKFIIEAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNKENAGDVKAKFIIEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN EL++YM  AF +IK+MC TH+CNLRMGAFTLGVNRVA+AT L
Sbjct: 347 EWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKSMCHTHSCNLRMGAFTLGVNRVARATQL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451836|ref|XP_004143666.1| PREDICTED: glutamate dehydrogenase 2-like [Cucumis sativus] gi|449488611|ref|XP_004158111.1| PREDICTED: LOW QUALITY PROTEIN: glutamate dehydrogenase 2-like [Cucumis sativus]

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/424 (81%), Positives = 380/424 (89%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR+AARILGLDSK+E+SLLIPFREIKVEC+IPKDDGSL ++VGFR+QHDN
Sbjct: 1   MNALAATNRNFRHAARILGLDSKIEKSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC PRELSMSELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCTPRELSMSELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH D+PAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKP+       
Sbjct: 121 TRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPL------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGR+AATG GV FATEALLAEHG  I ++ F IQGFGNVGSWAA+  H
Sbjct: 174 -------DLGGSLGRDAATGRGVVFATEALLAEHGMKIKDLTFVIQGFGNVGSWAARLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGKVVAVSDITGA+ NPNGIDVP L+ +K+   SL +FQG + MD N+LLVHECDVL+
Sbjct: 227 ERGGKVVAVSDITGAVTNPNGIDVPELIIHKEKTNSLVNFQGADGMDPNELLVHECDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           PCALGGVLN+ENAA V+AKFI+EAANHPTDPEADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct: 287 PCALGGVLNRENAAGVRAKFIVEAANHPTDPEADEILSKKGVLILPDIYANAGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMW+EEKVN EL+RYM  AF +IK+MC++H+C+LRMGAFTLGVNRVA+ATLL
Sbjct: 347 EWVQNIQGFMWDEEKVNKELQRYMTRAFYNIKSMCKSHDCSLRMGAFTLGVNRVARATLL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2183379	411	GDH2 "glutamate dehydrogenase	0.966	0.997	0.801	1e-185
TAIR|locus:2172309	411	GDH1 "glutamate dehydrogenase	0.964	0.995	0.782	1e-178
TAIR|locus:2079364	411	GDH3 "glutamate dehydrogenase	0.964	0.995	0.768	6.5e-177
UNIPROTKB|Q5HHC7	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|Q6GAW8	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|Q6GID0	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|Q7A1B9	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|Q7A6H8	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|Q99VD0	414	gluD "NAD-specific glutamate d	0.957	0.980	0.419	2.4e-92
UNIPROTKB|P39633	424	rocG "Catabolic NAD-specific g	0.962	0.962	0.415	6.5e-90

TAIR|locus:2183379 GDH2 "glutamate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 340/424 (80%), Positives = 374/424 (88%)

Query:     1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
             MNAL ATNRNFR+A+RILGLDSK+ERSL+IPFREIKVEC+IPKDDG+L +++GFR+QHDN
Sbjct:     1 MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDN 60

Query:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
             ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+PR+LS+SELERL
Sbjct:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERL 120

Query:   121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
             TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                    DLGGSLGREAATG GV FATEALLAE+GKSI  + F IQGFGNVG+WAAK  H
Sbjct:   174 -------DLGGSLGREAATGRGVVFATEALLAEYGKSIQGLTFVIQGFGNVGTWAAKLIH 226

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLV 300
             E GGKVVAVSDITGAI+NP GID+ A            DF GG+AM+ ++LL+HECDVL+
Sbjct:   227 EKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFNGGDAMNSDELLIHECDVLI 286

Query:   301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
             PCALGGVLNKENA DVKAKFI+EAANHPTDP+ADEILSKKGV+ILPDIYAN+GGVTVSYF
Sbjct:   287 PCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKGVIILPDIYANAGGVTVSYF 346

Query:   361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
             EWVQNIQGFMWEEEKVN EL++YM  AF +IKTMC TH+CNLRMGAFTLGVNRVA+AT L
Sbjct:   347 EWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCNLRMGAFTLGVNRVARATQL 406

Query:   421 RGWE 424
             RGWE
Sbjct:   407 RGWE 410

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

TAIR|locus:2172309 GDH1 "glutamate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1735 (615.8 bits), Expect = 1.0e-178, P = 1.0e-178
 Identities = 331/423 (78%), Positives = 364/423 (86%)

Query:     1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
             MNAL ATNRNF+ AAR+LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct:     1 MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
             ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P +LS+SELERL
Sbjct:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERL 120

Query:   121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
             TRVFTQKIHDLIGIH DVPAPDMGT  QTMAWILDEYSKFHG+SPAVVTGKPI       
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPI------- 173

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                    DLGGSLGR+AATG GV F TEALL EHGK+IS  +F IQGFGNVGSWAAK   
Sbjct:   174 -------DLGGSLGRDAATGRGVMFGTEALLNEHGKTISGQRFVIQGFGNVGSWAAKLIS 226

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLV 300
             E GGK+VAVSDITGAIKN +GID+PA             F G + +D N +LV +CD+LV
Sbjct:   227 EKGGKIVAVSDITGAIKNKDGIDIPALLKHTKEHRGVKGFDGADPIDPNSILVEDCDILV 286

Query:   301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
             P ALGGV+N+ENA ++KAKFIIEAANHPTDP+ADEILSKKGVVILPDIYANSGGVTVSYF
Sbjct:   287 PAALGGVINRENANEIKAKFIIEAANHPTDPDADEILSKKGVVILPDIYANSGGVTVSYF 346

Query:   361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
             EWVQNIQGFMWEEEKVN ELK YM  +FKD+K MC+TH+C+LRMGAFTLGVNRVAQAT+L
Sbjct:   347 EWVQNIQGFMWEEEKVNDELKTYMTRSFKDLKEMCKTHSCDLRMGAFTLGVNRVAQATIL 406

Query:   421 RGW 423
             RGW
Sbjct:   407 RGW 409

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005524 "ATP binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009646 "response to absence of light" evidence=IEP

TAIR|locus:2079364 GDH3 "glutamate dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
 Identities = 325/423 (76%), Positives = 362/423 (85%)

Query:     1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
             MNAL ATNRNF+ A+R+LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct:     1 MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
             ARGPMKGGIRYHPEV+PDEVNALAQLMTWKTAVA IPYGGAKGGIGC+P ELS+SELERL
Sbjct:    61 ARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSELERL 120

Query:   121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
             TRVFTQKIHDLIGIH DVPAPDMGT  QTMAWILDEYSKFHGHSPAVVTGKPI       
Sbjct:   121 TRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPI------- 173

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                    DLGGSLGR+AATG GV FATEALL EHGK+IS  +FAIQGFGNVGSWAAK   
Sbjct:   174 -------DLGGSLGRDAATGRGVLFATEALLNEHGKTISGQRFAIQGFGNVGSWAAKLIS 226

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLV 300
             + GGK+VAVSD+TGAIKN NGID+ +             F G +++D + +LV +CD+LV
Sbjct:   227 DKGGKIVAVSDVTGAIKNNNGIDILSLLEHAEENRGIKGFDGADSIDPDSILVEDCDILV 286

Query:   301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
             P ALGGV+N+ENA ++KAKFIIE ANHPTDPEADEIL KKGV+ILPDIYANSGGVTVSYF
Sbjct:   287 PAALGGVINRENANEIKAKFIIEGANHPTDPEADEILKKKGVMILPDIYANSGGVTVSYF 346

Query:   361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
             EWVQNIQGFMW+EEKVN ELK YM   FKD+K MCQTH+C+LRMGAFTLG+NRVAQAT +
Sbjct:   347 EWVQNIQGFMWDEEKVNRELKTYMTRGFKDLKEMCQTHSCDLRMGAFTLGINRVAQATTI 406

Query:   421 RGW 423
             RGW
Sbjct:   407 RGW 409

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q5HHC7 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus COL (taxid:93062)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q6GAW8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MSSA476 (taxid:282459)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q6GID0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MRSA252 (taxid:282458)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q7A1B9 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q7A6H8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus N315 (taxid:158879)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q99VD0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus Mu50 (taxid:158878)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 178/424 (41%), Positives = 263/424 (62%)

Query:     2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             N +T+T    + A   LG D  +   +  P R ++V   +  DDG++ TF G+R QH++A
Sbjct:     6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDA 65

Query:    62 RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
              GP KGG+R+HP+VD +EV AL+  MT K  +  +PYGG KGGI C+PR++S+ E+ERL+
Sbjct:    66 VGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLS 125

Query:   122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIVSIKRET 180
             R + + I   +G ++D+PAPD+ TNSQ MAW++DEYS     +SP  +TGKPIV      
Sbjct:   126 RGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIV------ 179

Query:   181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                     LGGS GR+ +T LGV  A E         I   K  IQGFGN GS+ AKF +
Sbjct:   180 --------LGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLY 231

Query:   241 EHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXD-FQGGNAMDLNDLLVHECDVL 299
             + G K+V +SD  GA+ +PNG+D+              + F+    +   +L   +CD+L
Sbjct:   232 DLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE--ETISNKELFELDCDIL 289

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   + ++NA D+KA  ++EAAN PT PEA  IL+++G++++PD+ A++GGVTVSY
Sbjct:   290 VPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSY 349

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+VN +L+  + +AF  I  + Q    ++R+ A+ +G+ R A+A  
Sbjct:   350 FEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAAR 409

Query:   420 LRGW 423
              RGW
Sbjct:   410 YRGW 413

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|P39633 rocG "Catabolic NAD-specific glutamate dehydrogenase RocG" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 176/424 (41%), Positives = 261/424 (61%)

Query:     1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
             +N   +T    + A R LG    +   +  P R + V   +  D+GS+  F G+R QH++
Sbjct:    15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74

Query:    61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
             A GP KGG+R+HPEV+ +EV AL+  MT K  +A +PYGG KGGI C+PR +S  ELERL
Sbjct:    75 AVGPTKGGVRFHPEVNEEEVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134

Query:   121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRE 179
             +R + + I  ++G  +D+PAPD+ TNSQ MAW++DEYS+     SP  +TGKP+V     
Sbjct:   135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLV----- 189

Query:   180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
                      LGGS GRE AT  GV    E  + + G  + N +  IQGFGN GS+ AKF 
Sbjct:   190 ---------LGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFM 240

Query:   240 HEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVL 299
             H+ G KV+ +SD  G + NP+G+D+P             +    + +   +LL  +CD+L
Sbjct:   241 HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFT-DVITNEELLEKDCDIL 299

Query:   300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
             VP A+   +  +NA +++A  ++EAAN PT  +A +IL+++GV+++PDI A++GGVTVSY
Sbjct:   300 VPAAISNQITAKNAHNIQASIVVEAANGPTTIDATKILNERGVLLVPDILASAGGVTVSY 359

Query:   360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
             FEWVQN QG+ W EE+V  +L+  M+S+F+ I     TH  ++R+ A+  G+ + A+A+ 
Sbjct:   360 FEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASR 419

Query:   420 LRGW 423
              RGW
Sbjct:   420 FRGW 423

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006520 "cellular amino acid metabolic process" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52596	DHE3_VITVI	1, ., 4, ., 1, ., 3	0.8018	0.9669	0.9975	yes	no
P96110	DHE3_THEMA	1, ., 4, ., 1, ., 3	0.4650	0.9410	0.9591	yes	no
Q6GID0	DHE2_STAAR	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
Q43260	DHE3_MAIZE	1, ., 4, ., 1, ., 3	0.7570	0.9669	0.9975	N/A	no
Q8RQP4	DHE4_COREF	1, ., 4, ., 1, ., 4	0.3099	0.9150	0.8680	yes	no
Q9S7A0	DHE3_ARATH	1, ., 4, ., 1, ., 3	0.7754	0.9646	0.9951	no	no
Q9YC65	DHE3_AERPE	1, ., 4, ., 1, ., 3	0.4121	0.9622	0.9760	yes	no
P39633	DHE2_BACSU	1, ., 4, ., 1, ., 2	0.4221	0.9622	0.9622	yes	no
Q7A1B9	DHE2_STAAW	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
P29051	DHE41_HALSI	1, ., 4, ., 1, ., 2	0.4194	0.9575	0.9333	yes	no
Q5HHC7	DHE2_STAAC	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
P27346	DHE2_CLODI	1, ., 4, ., 1, ., 2	0.4312	0.9646	0.9714	yes	no
Q47950	DHE3_PYRAB	1, ., 4, ., 1, ., 3	0.4380	0.9457	0.9547	yes	no
Q7A6H8	DHE2_STAAN	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
O59650	DHE3_PYRKO	1, ., 4, ., 1, ., 3	0.4312	0.9433	0.9501	yes	no
P93541	DHE3_SOLLC	1, ., 4, ., 1, ., 3	0.7741	0.9669	0.9951	N/A	no
P80319	DHE3_PYRFU	1, ., 4, ., 1, ., 3	0.4404	0.9457	0.9547	yes	no
P0CL72	DHE3_PYRHR	1, ., 4, ., 1, ., 3	0.4333	0.9457	0.9547	yes	no
P0CL73	DHE3_PYRHO	1, ., 4, ., 1, ., 3	0.4333	0.9457	0.9547	yes	no
P31026	DHE4_CORGL	1, ., 4, ., 1, ., 4	0.3147	0.9150	0.8680	yes	no
Q38946	DHE2_ARATH	1, ., 4, ., 1, ., 3	0.8160	0.9669	0.9975	yes	no
Q43314	DHE1_ARATH	1, ., 4, ., 1, ., 3	0.7919	0.9646	0.9951	no	no
Q6GAW8	DHE2_STAAS	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
Q9LEC8	DHEB_NICPL	1, ., 4, ., 1, ., 3	0.7759	0.9669	0.9975	N/A	no
Q99VD0	DHE2_STAAM	1, ., 4, ., 1, ., 2	0.4292	0.9575	0.9806	yes	no
P80053	DHE2_SULSO	1, ., 4, ., 1, ., 3	0.4109	0.9528	0.9619	yes	no
O04937	DHEA_NICPL	1, ., 4, ., 1, ., 3	0.7924	0.9669	0.9975	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.1	0.998
3rd Layer	1.4.1.3	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150904	glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_XII0003	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)						•	•		0.926
	estExt_fgenesh4_pm.C_LG_IV0266	glutamine synthetase (EC-6.3.1.2) (356 aa)						•	•		0.926
	estExt_fgenesh4_pg.C_LG_VII0739	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)						•	•		0.926
	estExt_fgenesh4_pg.C_1220090	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)						•	•		0.926
	estExt_Genewise1_v1.C_LG_V3325	glutamine synthetase (EC-6.3.1.2) (356 aa)						•	•		0.926
	estExt_Genewise1_v1.C_LG_II2125	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (358 aa)						•	•		0.926
	estExt_fgenesh4_pm.C_LG_X0783	delta-1-pyrroline-5-carboxylate synthetase (EC-2.7.2.11 1.2.1.41) (719 aa)						•	•		0.924
	estExt_fgenesh4_pm.C_1300024	SubName- Full=Putative uncharacterized protein; (588 aa)						•	•		0.912
	estExt_fgenesh4_pg.C_LG_XVI0276	SubName- Full=Putative uncharacterized protein; (1491 aa)						•	•		0.911
	estExt_fgenesh4_pg.C_LG_VI0304	hypothetical protein (1629 aa)						•	•		0.911

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
PLN02477	410	PLN02477, PLN02477, glutamate dehydrogenase	0.0
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	1e-175
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	1e-117
pfam00208	237	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl	1e-103
pfam02812	131	pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydr	3e-63
cd05211	217	cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding	5e-61
PRK14031	444	PRK14031, PRK14031, glutamate dehydrogenase; Provi	5e-57
PRK09414	445	PRK09414, PRK09414, glutamate dehydrogenase; Provi	3e-55
PTZ00079	454	PTZ00079, PTZ00079, NADP-specific glutamate dehydr	4e-54
PRK14030	445	PRK14030, PRK14030, glutamate dehydrogenase; Provi	7e-52
smart00839	102	smart00839, ELFV_dehydrog, Glutamate/Leucine/Pheny	2e-34
cd05313	254	cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain	6e-34
cd01075	200	cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d	3e-22
PTZ00324	1002	PTZ00324, PTZ00324, glutamate dehydrogenase 2; Pro	1e-07
PRK06270	341	PRK06270, PRK06270, homoserine dehydrogenase; Prov	1e-05
cd05191	86	cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do	8e-05

>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase

 Score =  812 bits (2100), Expect = 0.0
 Identities = 343/424 (80%), Positives = 372/424 (87%), Gaps = 14/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           MNAL ATNRNFR AAR+LGLDSKLE+SLLIPFREIKVEC+IPKDDG+LA+FVGFR+QHDN
Sbjct: 1   MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDN 60

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC+PR+LS SELERL
Sbjct: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERL 120

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET 180
           TRVFTQKIHDLIGIH DVPAPDMGTN+QTMAWILDEYSKFHG SPAVVTGKPI       
Sbjct: 121 TRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPI------- 173

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                  DLGGSLGREAATG GV FATEALLAEHGKSI+   F IQGFGNVGSWAA+  H
Sbjct: 174 -------DLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIH 226

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           E GGK+VAVSDITGA+KN NG+D+PAL K+      L  F GG+ +D +D+LV  CDVL+
Sbjct: 227 EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLI 286

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P ALGGV+NKENAADVKAKFI+EAANHPTDPEADEIL KKGVV+LPDIYANSGGVTVSYF
Sbjct: 287 PAALGGVINKENAADVKAKFIVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYF 346

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQNIQGFMWEEEKVN EL RYM  AFK +K MC+THNC+LRMGAFTLGVNRVA+AT+L
Sbjct: 347 EWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRVARATVL 406

Query: 421 RGWE 424
           RGWE
Sbjct: 407 RGWE 410

Length = 410

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score =  495 bits (1278), Expect = e-175
 Identities = 196/411 (47%), Positives = 266/411 (64%), Gaps = 15/411 (3%)

Query: 14  AARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHP 73
           A   L LD  +   L  P R I+V   +  DDGS+  F G+R+QH++A GP KGG+R+HP
Sbjct: 14  ALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHP 73

Query: 74  EVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIG 133
            V  +EV AL+  MT K A+A +PYGG KGGI  +P+ LS  ELERL+R F + I+ LIG
Sbjct: 74  YVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIG 133

Query: 134 IHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRETEKQRNKNDLGGS 192
              D+PAPD+GTN Q MAW++DEYSK  G+ +P V TGKP+               LGGS
Sbjct: 134 PDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLE--------------LGGS 179

Query: 193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252
           LGR  ATG GVF+A    L   G  +   + A+QGFGNVG +AA+  HE G KVVAVSD 
Sbjct: 180 LGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS 239

Query: 253 TGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN 312
            G I + +G+DV ALL+ K+   S+ ++ G   +   +LL  +CD+L+PCAL  V+ ++N
Sbjct: 240 KGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDN 299

Query: 313 AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
           A  +KAK ++E AN PT PEADEIL ++G++++PDI AN+GGV VSY EWVQN QG  W 
Sbjct: 300 ADQLKAKIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWT 359

Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           EE+V+ +L+R M++AF+ +    + +  +LR  A+ L   RVA A   RGW
Sbjct: 360 EEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERVADAMKARGW 410

Length = 411

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score =  340 bits (875), Expect = e-117
 Identities = 122/227 (53%), Positives = 159/227 (70%)

Query: 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249
           GGSLGRE ATG GV +AT   L + G  ++  + AIQGFGNVGS AA+F HE G KVVAV
Sbjct: 1   GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60

Query: 250 SDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLN 309
           SD  G I NP+G+DVPALL YKK + S+  F G   +   +LL  +CD+L+P AL   + 
Sbjct: 61  SDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQIT 120

Query: 310 KENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGF 369
            +NA  +KAK I+EAAN PT PEADEIL ++GV+++PDI AN+GGVTVSYFEWVQN+QGF
Sbjct: 121 ADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFEWVQNLQGF 180

Query: 370 MWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQ 416
            W+EE+VN  L+  M  AF+ +    + +  +LR  A+ L + RVA+
Sbjct: 181 YWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVAE 227

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  305 bits (783), Expect = e-103
 Identities = 107/237 (45%), Positives = 146/237 (61%), Gaps = 4/237 (1%)

Query: 190 GGSLGREAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 248
           GGSLGR  ATG GV +  E  L +  G S+     A+QGFGNVGS+AA+   E G KVVA
Sbjct: 1   GGSLGRPEATGYGVVYFVEEALKKLGGDSLEGKTVAVQGFGNVGSYAAEKLLELGAKVVA 60

Query: 249 VSDITGAIKNPNGIDVPALLKYKKSNKS-LNDFQGGNA--MDLNDLLVHECDVLVPCALG 305
           VSD +G I +PNGID+  LL+ K+     + ++ G  A  +   +L   +CD+LVPCA  
Sbjct: 61  VSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEIDCDILVPCATQ 120

Query: 306 GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQN 365
             +N+ENA  +KAK ++E AN PT PEADEIL ++G++  PD  AN+GGVTVSY E VQN
Sbjct: 121 NEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEMVQN 180

Query: 366 IQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
                W EE+V+ +L++ M + F+ +    + +  +LR  A   G  RVA A   RG
Sbjct: 181 SSRLSWTEEEVDEKLEKIMTNIFEAVVETAKEYGIDLRTAANIAGFERVADAMKARG 237

Length = 237

>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

 Score =  199 bits (509), Expect = 3e-63
 Identities = 66/131 (50%), Positives = 89/131 (67%)

Query: 31  PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
           P R I+V   +  DDG +    G+R+QH+ A GP KGGIR+HP V  +EV  LA  MT+K
Sbjct: 1   PERVIQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKGGIRFHPYVTLEEVKRLAFGMTYK 60

Query: 91  TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
            A+A +P+GG KGGI  +P+ LS +ELERLTR F +++  +IG  RD+PAPD+GT  + M
Sbjct: 61  NALAGLPFGGGKGGIIGDPKGLSDAELERLTRAFGRELESIIGPGRDIPAPDVGTGPREM 120

Query: 151 AWILDEYSKFH 161
           AWI DEY +  
Sbjct: 121 AWIADEYRRVT 131

Length = 131

>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score =  197 bits (501), Expect = 5e-61
 Identities = 87/218 (39%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIK 257
           ATG GV  A +A +   G S+  +  A+QG GNVG   AK   E GGKV+AVSD  G I 
Sbjct: 1   ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIY 60

Query: 258 NPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK 317
           +P GI    L+ Y  +       +  +      +L  + D+  PCALG V++ ENA  +K
Sbjct: 61  DP-GITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLK 119

Query: 318 AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVN 377
           AK + E AN+PT  EA  IL ++G+V+ PDI AN+GGV VSYFEWVQN+Q   W+ E+V 
Sbjct: 120 AKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEWVQNLQRLSWDAEEVR 179

Query: 378 HELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 415
            +L++ M      +  + +     +R  A  L   R+A
Sbjct: 180 SKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217

>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional

 Score =  193 bits (492), Expect = 5e-57
 Identities = 131/419 (31%), Positives = 193/419 (46%), Gaps = 43/419 (10%)

Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           +ER L IP R  +   +   D G++ T +G+R+QH+NA GP KGGIR+H  V+   +  L
Sbjct: 47  IER-LCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNLGILKFL 105

Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
           A   T+K ++  +P GG KGG   +PR  S +E+ R  + F  ++   IG   DVPA D+
Sbjct: 106 AFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDI 165

Query: 144 GTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGV 203
           G   + + ++   Y K         TGK                + GGSL R  ATG G 
Sbjct: 166 GVGGREVGFMFGMYKKLSHEFTGTFTGKGR--------------EFGGSLIRPEATGYGN 211

Query: 204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID 263
            +    +L   G  +      + G GNV  + A+   E GGKVV +SD  G I +P+GID
Sbjct: 212 IYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGID 271

Query: 264 VPALLKYKKSNKSLNDFQGGN----AMDLNDLLV-------HECDVLVPCALGGVLNKEN 312
              L    +    L +   G     A       V        + D+ +P A    LN ++
Sbjct: 272 REKLDYIME----LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDD 327

Query: 313 AADVKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGF 369
           A  + A  +I   E AN P+ PEA ++     ++  P   AN+GGV+VS  E  QN    
Sbjct: 328 ARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKL 387

Query: 370 MWEEEKVNHELKRYMMSAFKDIKTMCQTHN------CNLRMGAFTLGVNRVAQATLLRG 422
            W  E+V+ +LK  M    K+I   C  +        N   GA   G  +VA+A + +G
Sbjct: 388 SWSSEEVDEKLKSIM----KNIHEACVQYGTEADGYVNYVKGANVAGFMKVAKAMMAQG 442

Length = 444

>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional

 Score =  188 bits (481), Expect = 3e-55
 Identities = 119/386 (30%), Positives = 183/386 (47%), Gaps = 43/386 (11%)

Query: 53  GFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPREL 112
           GFR+Q ++A GP KGG+R+HP V+   +  L     +K A+  +P GG KGG   +P+  
Sbjct: 79  GFRVQFNSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGK 138

Query: 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKP 172
           S +E+ R  + F  +++  IG   DVPA D+G   + + ++  +Y +       V+TGK 
Sbjct: 139 SDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKG 198

Query: 173 IVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVG 232
           +                GGSL R  ATG G+ +  E +L   G S    +  + G GNV 
Sbjct: 199 L--------------SFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVA 244

Query: 233 SWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS-NKSLNDF---------QG 282
            +A +   + G KVV  SD +G + +  GID+  L + K+     ++++         +G
Sbjct: 245 IYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEG 304

Query: 283 GNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA---KFIIEAANHPTDPEADEILSK 339
           G+   +       CD+ +PCA    L++E+A  + A   K + E AN P+ PEA E+  +
Sbjct: 305 GSPWSV------PCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLE 358

Query: 340 KGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQT-- 397
            GV+  P   AN+GGV  S  E  QN     W  E+V+  L   M    K+I   C    
Sbjct: 359 AGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIM----KNIHHACVETA 414

Query: 398 ----HNCNLRMGAFTLGVNRVAQATL 419
                  N   GA   G  +VA A L
Sbjct: 415 EEYGKPGNYVAGANIAGFVKVADAML 440

Length = 445

>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase; Provisional

 Score =  186 bits (473), Expect = 4e-54
 Identities = 114/389 (29%), Positives = 178/389 (45%), Gaps = 39/389 (10%)

Query: 53  GFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPREL 112
           GFR+Q+++A GP KGG+R+HP V+   +  L     +K ++  +P GG KGG   +P+  
Sbjct: 84  GFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGK 143

Query: 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKP 172
           S +E+ R  + F  +++  IG   DVPA D+G   + + ++  +Y K   +    +TGK 
Sbjct: 144 SDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKN 203

Query: 173 IVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVG 232
           +                GGS  R  ATG G+ +    +L +   S+      + G GNV 
Sbjct: 204 V--------------KWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVA 249

Query: 233 SWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAL-----LK---------YKKSNKSLN 278
            +A +   + G KV+ +SD  G I  PNG     L     LK         Y K + +  
Sbjct: 250 QYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK 309

Query: 279 DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAA---DVKAKFIIEAANHPTDPEADE 335
              G    ++       CD+  PCA    +N E+A        K + E AN PT  EA  
Sbjct: 310 YVPGKKPWEV------PCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH 363

Query: 336 ILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMC 395
           +  K GV+  P   AN+GGV +S  E  QN     W  E+V+ +L+  M S F+      
Sbjct: 364 LFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYA 423

Query: 396 QTHN--CNLRMGAFTLGVNRVAQATLLRG 422
           + +    +L  GA   G  +VA + + +G
Sbjct: 424 EKYGGKSDLVAGANIAGFLKVADSMIEQG 452

Length = 454

>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional

 Score =  180 bits (457), Expect = 7e-52
 Identities = 119/396 (30%), Positives = 172/396 (43%), Gaps = 35/396 (8%)

Query: 44  DDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKG 103
           D G +   +G+R+Q +NA GP KGGIR+HP V+   +  L    T+K A+  +P GG KG
Sbjct: 66  DKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKG 125

Query: 104 GIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH 163
           G   +PR  S +E+ R  + F  ++   IG   DVPA D+G   + + ++   Y K    
Sbjct: 126 GSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTRE 185

Query: 164 SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKF 223
               +TGK +              + GGSL R  ATG G  +    +L   G  I     
Sbjct: 186 FTGTLTGKGL--------------EFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTV 231

Query: 224 AIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID---VPALLKYKKSNKSL--- 277
           AI GFGNV   AA    E G KVV +S   G I +P+GI    +  +L+ + S   +   
Sbjct: 232 AISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAP 291

Query: 278 --NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPE 332
               F G            + D+ +PCA    LN E+A  +       + E +N     E
Sbjct: 292 YAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAE 351

Query: 333 ADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIK 392
           A +       +  P    N+GGV  S  E  QN     W  E+V+ +L + M      I 
Sbjct: 352 AIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIM----SGIH 407

Query: 393 TMCQTHN------CNLRMGAFTLGVNRVAQATLLRG 422
             C  +        N   GA   G  +VA+A L +G
Sbjct: 408 EQCVKYGKEGDGYINYVKGANIAGFMKVAKAMLAQG 443

Length = 445

>gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  123 bits (311), Expect = 2e-34
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 296 CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGV 355
           CD+ +PCAL  V+N+ NA  + AK I E AN P   EAD+IL  +GV+  PD  AN+GGV
Sbjct: 3   CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGV 62

Query: 356 TVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH 398
            VS  E +QN+       E+V  +L   M +A ++I    Q +
Sbjct: 63  IVSALEMLQNLAR---TAEEVFTDLSEIMRNALEEIFETAQKY 102

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Length = 102

>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

 Score =  126 bits (320), Expect = 6e-34
 Identities = 81/255 (31%), Positives = 116/255 (45%), Gaps = 31/255 (12%)

Query: 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249
           GGSL R  ATG G+ +  E +L +  +++   + AI G GNV  +AA+   E G KVV +
Sbjct: 8   GGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTL 67

Query: 250 SDITGAIKNPNGIDVPAL-----LK---------YKKSNKSLNDFQGGNAMDLNDLLVHE 295
           SD  G + +P+G     L     +K         Y K   +   F+G    +        
Sbjct: 68  SDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWE------VP 121

Query: 296 CDVLVPCALGGVLNKENAADVKA------KFIIEAANHPTDPEADEILSKKGVVILPDIY 349
           CD+  PCA     N+ +A D K       K++ E AN P   EA E+  + GV+  P   
Sbjct: 122 CDIAFPCA---TQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQAGVLFAPGKA 178

Query: 350 ANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAF 407
           AN+GGV VS  E  QN Q   W  E+V+ +LK  M +         +      +L  GA 
Sbjct: 179 ANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGAN 238

Query: 408 TLGVNRVAQATLLRG 422
             G  +VA A L +G
Sbjct: 239 IAGFLKVADAMLAQG 253

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 23/161 (14%)

Query: 199 TGLGVFFATEALLAEH---GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA 255
           T  GVF   +A  AEH     S+     A+QG G VG   A+   E G K++ V+DI   
Sbjct: 5   TAYGVFLGMKAA-AEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADI--- 59

Query: 256 IKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAAD 315
             N   +   A L             G   +   ++   + DV  PCALGGV+N +    
Sbjct: 60  --NEEAVARAAELF------------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQ 105

Query: 316 VKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGGV 355
           +KAK I  AAN+   DP   ++L ++G++  PD   N+GG+
Sbjct: 106 LKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGL 146

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200

>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 93/384 (24%), Positives = 127/384 (33%), Gaps = 97/384 (25%)

Query: 49  ATFVGFRIQ-HDNARGPMKGGIR---------YHPEVDP--DEVNALA--QLMTWKTAVA 94
           A F GF I+  D ARG    G+R         Y        DE   LA  QL+  K    
Sbjct: 484 AQFRGFHIRFTDIARG----GVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKNKD--- 536

Query: 95  AIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGI----HRDVP----------A 140
            IP GG+KG I  + R L+     R    F Q I  L+ +     + V            
Sbjct: 537 -IPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLG 595

Query: 141 PDMGTNSQTMAWILDEYSKFHGHS--PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAA 198
           PD  T    M W    ++K  G+    +  TGK               +D  G   R   
Sbjct: 596 PDEHTTGTLMDWA-ALHAKKRGYPFWKSFTTGK-------SPSMGGIPHDTYGMTTRSVR 647

Query: 199 TGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIK 257
                 + T  L           KF   G  G++GS       E   K V + D +G + 
Sbjct: 648 A-----YVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSKE---KTVGIVDGSGVLH 699

Query: 258 NPNGIDVPALLKYKKSNKSLNDF-------------QGGNAMDLND-------------- 290
           +P G++   L +         +F                  + L D              
Sbjct: 700 DPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEF 759

Query: 291 --LLVHECDVLVPCALGG-----------VLNKENAADVKAKFIIEAANHPTDPEADEIL 337
             L   + DV VPC  GG               E    ++ K I+E AN     +A   L
Sbjct: 760 HLLPYSDADVFVPC--GGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLAL 817

Query: 338 SKKGVVILPDIYANSGGVTVSYFE 361
            + GV++  D  AN GGVT S  E
Sbjct: 818 EECGVILFKDASANKGGVTSSSLE 841

Length = 1002

>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 46/160 (28%)

Query: 221 MKFAIQGFGNVGSWAAKFFHEHGG----------KVVAVSDITGAIKNPNGIDVPALLKY 270
           MK A+ GFG VG   A+   E             KVVA++D +G+  +P+G+D+   LK 
Sbjct: 3   MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKV 62

Query: 271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTD 330
           K+    L D+  G        ++   D                ADV    ++EA   PT+
Sbjct: 63  KEETGKLADYPEGGGEISGLEVIRSVD----------------ADV----VVEAT--PTN 100

Query: 331 PEADE---------ILSKKGVVILPDIYANSGGVTVSYFE 361
            E  E         +   K VV      +N G + ++Y E
Sbjct: 101 IETGEPALSHCRKALERGKHVVT-----SNKGPLALAYKE 135

Length = 341

>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252
           AT  G     +A      KS+      + G G VG   AK   + GGK V + D 
Sbjct: 1   ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
PLN02477	410	glutamate dehydrogenase	100.0
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	100.0
PRK14030	445	glutamate dehydrogenase; Provisional	100.0
PRK09414	445	glutamate dehydrogenase; Provisional	100.0
PRK14031	444	glutamate dehydrogenase; Provisional	100.0
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	100.0
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	100.0
PTZ00324	1002	glutamate dehydrogenase 2; Provisional	100.0
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	100.0
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	100.0
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	100.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	100.0
PF02812	131	ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, di	100.0
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	100.0
smart00839	102	ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali	99.97
COG2902	1592	NAD-specific glutamate dehydrogenase [Amino acid t	99.97
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	99.96
PRK08374	336	homoserine dehydrogenase; Provisional	99.31
PRK06392	326	homoserine dehydrogenase; Provisional	99.09
PRK06270	341	homoserine dehydrogenase; Provisional	98.79
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.69
PLN02700	377	homoserine dehydrogenase family protein	98.21
PRK06813	346	homoserine dehydrogenase; Validated	98.02
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.97
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.79
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.74
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.65
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.5
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.43
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.38
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.28
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.28
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.27
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.26
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.14
PRK13529	563	malate dehydrogenase; Provisional	97.1
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.04
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.03
PRK12861	764	malic enzyme; Reviewed	96.98
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.96
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.94
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.93
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.91
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.89
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.85
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.81
PRK13243	333	glyoxylate reductase; Reviewed	96.75
PLN02494	477	adenosylhomocysteinase	96.71
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.61
PRK06932	314	glycerate dehydrogenase; Provisional	96.56
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.55
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.54
PRK14982	340	acyl-ACP reductase; Provisional	96.51
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.48
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.46
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.43
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.41
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.4
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.35
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.33
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.29
PLN02928	347	oxidoreductase family protein	96.29
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.29
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.28
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.26
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.24
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.23
PRK07574	385	formate dehydrogenase; Provisional	96.22
PRK12862	763	malic enzyme; Reviewed	96.21
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.2
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.19
PLN03139	386	formate dehydrogenase; Provisional	96.15
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.09
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.03
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.01
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.99
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.98
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.96
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.95
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.91
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	95.89
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.88
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.84
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	95.81
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.81
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.72
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.63
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.62
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.6
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.57
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.55
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.54
PLN00203	519	glutamyl-tRNA reductase	95.53
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.47
COG5322	351	Predicted dehydrogenase [General function predicti	95.45
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.44
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.4
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.37
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.37
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.3
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.3
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.27
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	95.22
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.19
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.15
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.05
PRK06349	426	homoserine dehydrogenase; Provisional	94.95
PRK06487	317	glycerate dehydrogenase; Provisional	94.94
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.92
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.89
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	94.87
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	94.87
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.87
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	94.86
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.84
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.81
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.8
PRK08328	231	hypothetical protein; Provisional	94.78
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.75
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.66
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.64
PRK08223	287	hypothetical protein; Validated	94.64
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.63
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.63
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	94.63
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.62
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.62
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	94.6
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.56
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.56
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.5
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	94.49
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.49
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.44
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.37
PRK07680	273	late competence protein ComER; Validated	94.35
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.34
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.28
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.25
PRK06141	314	ornithine cyclodeaminase; Validated	94.25
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.23
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.22
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.1
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	94.08
PRK06436	303	glycerate dehydrogenase; Provisional	94.05
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.98
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.97
PRK05225	487	ketol-acid reductoisomerase; Validated	93.95
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.94
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	93.93
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	93.93
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.86
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.84
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.81
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.8
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	93.78
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.75
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	93.73
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.71
PRK12480	330	D-lactate dehydrogenase; Provisional	93.65
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.65
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.63
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	93.61
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.59
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.57
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.45
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	93.43
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.42
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	93.41
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.32
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.32
TIGR00036	266	dapB dihydrodipicolinate reductase.	93.32
PRK06153	393	hypothetical protein; Provisional	93.31
PRK15059	292	tartronate semialdehyde reductase; Provisional	93.19
PRK14852	989	hypothetical protein; Provisional	93.16
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.15
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	93.1
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.08
PRK14851	679	hypothetical protein; Provisional	93.04
PLN02306	386	hydroxypyruvate reductase	92.99
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.98
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	92.94
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	92.81
PRK07340	304	ornithine cyclodeaminase; Validated	92.77
PRK13403	335	ketol-acid reductoisomerase; Provisional	92.62
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	92.54
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.47
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.46
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.43
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	92.38
PRK07877	722	hypothetical protein; Provisional	92.37
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.33
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.3
PRK05479	330	ketol-acid reductoisomerase; Provisional	92.13
PLN02688	266	pyrroline-5-carboxylate reductase	92.03
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	92.01
PRK13303	265	L-aspartate dehydrogenase; Provisional	91.94
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.92
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	91.9
COG2130	340	Putative NADP-dependent oxidoreductases [General f	91.89
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.69
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.67
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.63
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.55
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	91.53
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	91.52
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	91.5
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	91.33
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.31
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	91.28
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.28
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	91.23
PRK06046	326	alanine dehydrogenase; Validated	91.22
PRK08300	302	acetaldehyde dehydrogenase; Validated	91.22
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	91.14
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	90.95
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	90.75
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.71
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	90.68
PRK08605	332	D-lactate dehydrogenase; Validated	90.66
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	90.59
COG2344	211	AT-rich DNA-binding protein [General function pred	90.49
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	90.09
PRK10669	558	putative cation:proton antiport protein; Provision	90.05
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	90.05
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	90.03
PRK07417	279	arogenate dehydrogenase; Reviewed	89.99
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	89.92
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.82
PRK08618	325	ornithine cyclodeaminase; Validated	89.75
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.65
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	89.39
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.26
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	89.18
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.02
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	89.02
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.97
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	88.9
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.79
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	88.78
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	88.75
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.59
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.51
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	88.42
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	88.34
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.11
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	88.09
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.08
PLN02712	667	arogenate dehydrogenase	88.08
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.98
PRK09496	453	trkA potassium transporter peripheral membrane com	87.97
PRK12548	289	shikimate 5-dehydrogenase; Provisional	87.87
PLN02858	1378	fructose-bisphosphate aldolase	87.86
KOG0409	327	consensus Predicted dehydrogenase [General functio	87.82
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.79
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	87.79
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.76
PRK11579	346	putative oxidoreductase; Provisional	87.6
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	87.56
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.47
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.43
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	87.22
KOG1257	582	consensus NADP+-dependent malic enzyme [Energy pro	87.21
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.1
PLN02858	1378	fructose-bisphosphate aldolase	87.07
PRK05717	255	oxidoreductase; Validated	87.05
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	87.03
PLN02712	667	arogenate dehydrogenase	86.96
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	86.91
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	86.9
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.87
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	86.75
TIGR03628	114	arch_S11P archaeal ribosomal protein S11P. This mo	86.58
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.42
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.37
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	86.36
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.35
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	86.26
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	86.17
PTZ00082	321	L-lactate dehydrogenase; Provisional	85.94
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	85.8
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.67
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	85.49
PRK09496	453	trkA potassium transporter peripheral membrane com	85.47
PRK09607	132	rps11p 30S ribosomal protein S11P; Reviewed	85.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.35
PLN02256	304	arogenate dehydrogenase	85.31
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	85.09
PRK04148	134	hypothetical protein; Provisional	84.99
PTZ00431	260	pyrroline carboxylate reductase; Provisional	84.95
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.85
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.81
PRK08507	275	prephenate dehydrogenase; Validated	84.62
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	84.4
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	84.36
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	84.29
PRK07523	255	gluconate 5-dehydrogenase; Provisional	84.14
PRK08628	258	short chain dehydrogenase; Provisional	83.64
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	83.63
COG0673	342	MviM Predicted dehydrogenases and related proteins	83.5
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	83.48
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	83.48
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.44
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	83.33
PRK12828	239	short chain dehydrogenase; Provisional	83.29
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	83.22
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	83.16
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	83.14
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.08
PTZ00117	319	malate dehydrogenase; Provisional	83.0
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.96
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	82.8
PRK07060	245	short chain dehydrogenase; Provisional	82.78
PRK09291	257	short chain dehydrogenase; Provisional	82.63
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	82.51
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	82.5
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.35
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.34
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	82.22
PLN02896	353	cinnamyl-alcohol dehydrogenase	82.19
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	82.16
PRK06849	389	hypothetical protein; Provisional	82.16
PRK06138	252	short chain dehydrogenase; Provisional	82.14
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	82.1
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	81.98
PRK05309	128	30S ribosomal protein S11; Validated	81.56
PRK12742	237	oxidoreductase; Provisional	81.51
PLN02206	442	UDP-glucuronate decarboxylase	81.49
PLN02586	360	probable cinnamyl alcohol dehydrogenase	81.44
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.29
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	81.19
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	81.08
CHL00041	116	rps11 ribosomal protein S11	81.06
TIGR03632	108	bact_S11 30S ribosomal protein S11. This model des	81.02
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	80.87
PRK06523	260	short chain dehydrogenase; Provisional	80.84
PRK06841	255	short chain dehydrogenase; Provisional	80.83
PRK12938	246	acetyacetyl-CoA reductase; Provisional	80.73
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.72
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	80.63
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.62
PRK07774	250	short chain dehydrogenase; Provisional	80.56
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	80.54
cd01974	435	Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitro	80.49
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.45
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	80.37
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.34
PRK08339	263	short chain dehydrogenase; Provisional	80.32
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	80.23
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.14
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	80.13
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	80.09

>PLN02477 glutamate dehydrogenase

Probab=100.00  E-value=1.2e-132  Score=1021.64  Aligned_cols=410  Identities=84%  Similarity=1.331  Sum_probs=406.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      |++|++++++|++|++++++++++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev   80 (410)
T PLN02477          1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV   80 (410)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus        81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~  160 (410)
T PLN02477         81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF  160 (410)
T ss_pred             HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463          161 HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH  240 (424)
Q Consensus       161 ~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~  240 (424)
                      +|++|+++||||+              .+|||.+|.++||+||+++++++++++|.+++|+||+||||||||+++|++|+
T Consensus       161 ~g~~~~~vtGkp~--------------~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~  226 (410)
T PLN02477        161 HGFSPAVVTGKPI--------------DLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIH  226 (410)
T ss_pred             hCCCCceEeCCCc--------------ccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHH
Confidence            9999999999999              99999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463          241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF  320 (424)
Q Consensus       241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki  320 (424)
                      ++|+|||||||++|++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++||++++||+
T Consensus       227 e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~  306 (410)
T PLN02477        227 EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKF  306 (410)
T ss_pred             HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      |+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++++++++.|+++++
T Consensus       307 I~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~  386 (410)
T PLN02477        307 IVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNC  386 (410)
T ss_pred             EEeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCC
Q 014463          401 NLRMGAFTLGVNRVAQATLLRGWE  424 (424)
Q Consensus       401 ~~r~aA~~~A~~rv~~a~~~rg~~  424 (424)
                      ++|+|||++|++||+++|+.||||
T Consensus       387 ~~r~aA~~~a~~rv~~a~~~rG~~  410 (410)
T PLN02477        387 SLRMGAFTLGVNRVARATVLRGWE  410 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999999999999997

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-130  Score=987.28  Aligned_cols=408  Identities=48%  Similarity=0.839  Sum_probs=402.7

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ++|++++.++.+|++.+++++.++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++|++
T Consensus         2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~   81 (411)
T COG0334           2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK   81 (411)
T ss_pred             cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||+||||||||++||||||||||++||+.+|++|+|||+|+|+++|.+++||++||||||+||++++|+||+|+|+++.
T Consensus        82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~  161 (411)
T COG0334          82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV  161 (411)
T ss_pred             HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463          162 GH-SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH  240 (424)
Q Consensus       162 g~-~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~  240 (424)
                      |. .||++||||+              ++|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+++|++|+
T Consensus       162 g~~~~gv~TGKp~--------------~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~  227 (411)
T COG0334         162 GNSAPGVFTGKPL--------------ELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLH  227 (411)
T ss_pred             CCCCcceecCCcc--------------cccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHH
Confidence            87 4999999999              99999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463          241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF  320 (424)
Q Consensus       241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki  320 (424)
                      +.|+|||++||++|+||||+|||+++|.+.+++.+++..|++++.++++++|+++||||+|||++|+||++||++++||+
T Consensus       228 ~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~  307 (411)
T COG0334         228 ELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKI  307 (411)
T ss_pred             HcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcE
Confidence            99999999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      |+||||+|+|++|+++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++
T Consensus       308 V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~  387 (411)
T COG0334         308 VVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGV  387 (411)
T ss_pred             EEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          401 NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       401 ~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++|+|||++|++||++||+.|||
T Consensus       388 ~~r~aA~~~a~~Rva~Am~~~G~  410 (411)
T COG0334         388 DLRTAAYILAFERVADAMKARGW  410 (411)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998

>PRK14030 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-128  Score=996.17  Aligned_cols=408  Identities=30%  Similarity=0.465  Sum_probs=400.8

Q ss_pred             CHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCC
Q 014463            2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD   76 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t   76 (424)
                      ++||+++.+|++|+++++++|+     ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++
T Consensus        19 eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p~v~   98 (445)
T PRK14030         19 EYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVN   98 (445)
T ss_pred             HHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecCCCC
Confidence            4799999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHH
Q 014463           77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE  156 (424)
Q Consensus        77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~  156 (424)
                      ++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||+.|||||||||++++|+||+|+
T Consensus        99 ~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~  178 (445)
T PRK14030         99 LSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGM  178 (445)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH
Q 014463          157 YSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA  236 (424)
Q Consensus       157 ~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a  236 (424)
                      |+++.++.++++||||+              .+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|
T Consensus       179 y~~~~~~~~g~vTGkp~--------------~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA  244 (445)
T PRK14030        179 YKKLTREFTGTLTGKGL--------------EFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAA  244 (445)
T ss_pred             HHhccCccccEEEcccc--------------ccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHH
Confidence            99999988999999999              9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCEEEEEEcCCCceeCCCCCCHHH---HHHHHHhcCCcc-----cCCCCeeecCCcccccccceeeeccccCcc
Q 014463          237 KFFHEHGGKVVAVSDITGAIKNPNGIDVPA---LLKYKKSNKSLN-----DFQGGNAMDLNDLLVHECDVLVPCALGGVL  308 (424)
Q Consensus       237 ~~L~~~GakVVaVsD~~G~i~~~~GlDi~~---L~~~~~~~g~v~-----~~~~~~~i~~~~ll~~~~DIliPaA~~~~I  308 (424)
                      ++|++.|+|||+|||++|+||||+|||+++   |++++++++++.     .||+++.++++++|+++||||+|||++|+|
T Consensus       245 ~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I  324 (445)
T PRK14030        245 TKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNEL  324 (445)
T ss_pred             HHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccC
Confidence            999999999999999999999999999888   888999888876     788889999999999999999999999999


Q ss_pred             cccccccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHH
Q 014463          309 NKENAADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMM  385 (424)
Q Consensus       309 t~~na~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~  385 (424)
                      |++||+++   +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.
T Consensus       325 ~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~  404 (445)
T PRK14030        325 NGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMS  404 (445)
T ss_pred             CHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHH
Confidence            99999999   999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          386 SAFKDIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       386 ~~~~~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++|+++++.+++++  +++|+|||++|++||++||..|||
T Consensus       405 ~~~~~v~~~~~~~~~~~~lr~aA~~~a~~rva~a~~~rG~  444 (445)
T PRK14030        405 GIHEQCVKYGKEGDGYINYVKGANIAGFMKVAKAMLAQGV  444 (445)
T ss_pred             HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999  999999999999999999999998

>PRK09414 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-125  Score=973.75  Aligned_cols=408  Identities=30%  Similarity=0.497  Sum_probs=400.1

Q ss_pred             CHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCC
Q 014463            2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD   76 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t   76 (424)
                      ++|++++.+|++|+++++++|+     ++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++
T Consensus        23 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p~v~  102 (445)
T PRK09414         23 EFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVN  102 (445)
T ss_pred             hHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecCCCC
Confidence            5899999999999999999999     99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHH
Q 014463           77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE  156 (424)
Q Consensus        77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~  156 (424)
                      .+|+.+||+||||||||++||||||||||.+||+++|+.|+|||+|+|+++|.+++||..|||+|||||++++|+||+|+
T Consensus       103 ~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~  182 (445)
T PRK09414        103 LSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ  182 (445)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH
Q 014463          157 YSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA  236 (424)
Q Consensus       157 ~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a  236 (424)
                      |+++.++..|++||||+              .+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|
T Consensus       183 y~~~~~~~~g~vtGkp~--------------~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A  248 (445)
T PRK09414        183 YKRLTNRFEGVLTGKGL--------------SFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAI  248 (445)
T ss_pred             HHhhcCcceEEEecCCc--------------ccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHH
Confidence            99999987799999999              9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc-CCcccCC---CCeeecCCcccccccceeeeccccCcccccc
Q 014463          237 KFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN-KSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNKEN  312 (424)
Q Consensus       237 ~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~-g~v~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~~n  312 (424)
                      ++|++.|+|||+|||++|++|||+|||+++|+++++++ +++.+|+   +++.++++++|+++||||||||++|+||++|
T Consensus       249 ~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~  328 (445)
T PRK09414        249 EKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEED  328 (445)
T ss_pred             HHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHH
Confidence            99999999999999999999999999999999999887 5888887   5677899999999999999999999999999


Q ss_pred             cccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHH
Q 014463          313 AADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFK  389 (424)
Q Consensus       313 a~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~  389 (424)
                      +.++   +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+
T Consensus       329 a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~  408 (445)
T PRK09414        329 AKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHH  408 (445)
T ss_pred             HHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHH
Confidence            9999   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          390 DIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       390 ~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++++.+++++  +++|+|||++|++||++||+.|||
T Consensus       409 ~~~~~~~~~~~~~~~r~aA~~~a~~rv~~a~~~rG~  444 (445)
T PRK09414        409 ACVETAEEYGKPGNYVAGANIAGFVKVADAMLAQGV  444 (445)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999  999999999999999999999997

>PRK14031 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-121  Score=941.20  Aligned_cols=407  Identities=30%  Similarity=0.465  Sum_probs=389.0

Q ss_pred             HHHHHHHHHHHHHHHcCCChHH-----HHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCH
Q 014463            3 ALTATNRNFRYAARILGLDSKL-----ERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP   77 (424)
Q Consensus         3 ~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~   77 (424)
                      ++|.++..+..-..+++-+|++     +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++++
T Consensus        20 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~   99 (444)
T PRK14031         20 YHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNL   99 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCH
Confidence            4566666666666777766665     56999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHh
Q 014463           78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEY  157 (424)
Q Consensus        78 ~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~  157 (424)
                      +|+++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||+.|||||||||++++|+||+|+|
T Consensus       100 ~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y  179 (444)
T PRK14031        100 GILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMY  179 (444)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHH
Q 014463          158 SKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAK  237 (424)
Q Consensus       158 ~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~  237 (424)
                      +++.++.+|++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|+
T Consensus       180 ~~~~~~~~g~~tgkp~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~  245 (444)
T PRK14031        180 KKLSHEFTGTFTGKGR--------------EFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAE  245 (444)
T ss_pred             HhhcCCcceEECCCcc--------------ccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHH
Confidence            9999988999999999              99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCEEEEEEcCCCceeCCCCCCHHHHH---HHHHh-cCCcccCC---CCeeecCCcccccccceeeeccccCcccc
Q 014463          238 FFHEHGGKVVAVSDITGAIKNPNGIDVPALL---KYKKS-NKSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNK  310 (424)
Q Consensus       238 ~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~---~~~~~-~g~v~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~  310 (424)
                      +|++.|+|||+|||++|++|||+|||+++|.   +++.+ ++++.+|+   +++.++++++|+.+||||+|||++++||+
T Consensus       246 ~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~  325 (444)
T PRK14031        246 KVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNG  325 (444)
T ss_pred             HHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCH
Confidence            9999999999999999999999999999987   55555 67788886   67788999999999999999999999999


Q ss_pred             cccccccce---EEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHH
Q 014463          311 ENAADVKAK---FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSA  387 (424)
Q Consensus       311 ~na~~i~ak---iIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~  387 (424)
                      +||++++|+   +|+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++
T Consensus       326 ~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~  405 (444)
T PRK14031        326 DDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNI  405 (444)
T ss_pred             HHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHH
Confidence            999999986   99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          388 FKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       388 ~~~v~~~a~~~--~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      |+++++.++++  ++++|+|||++|++||++||+.|||
T Consensus       406 ~~~v~~~~~~~~~~~~~r~aA~~~a~~rva~a~~~~G~  443 (444)
T PRK14031        406 HEACVQYGTEADGYVNYVKGANVAGFMKVAKAMMAQGI  443 (444)
T ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999988  6999999999999999999999997

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-120  Score=935.23  Aligned_cols=387  Identities=30%  Similarity=0.508  Sum_probs=375.6

Q ss_pred             HHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 014463           23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK  102 (424)
Q Consensus        23 ~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaK  102 (424)
                      .++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||+++++|+++||++|||||||++||+||||
T Consensus        54 ~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgK  133 (454)
T PTZ00079         54 GVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGK  133 (454)
T ss_pred             HHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhh
Q 014463          103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEK  182 (424)
Q Consensus       103 ggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~  182 (424)
                      |||.+||+.+|+.|++|++|+|+++|.++|||+.||||||+||++++|+||+++|+++.+..++++||||+         
T Consensus       134 GGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~---------  204 (454)
T PTZ00079        134 GGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNV---------  204 (454)
T ss_pred             eeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCC---------
Confidence            99999999999999999999999999999999999999999999999999999999999988999999999         


Q ss_pred             hhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCC
Q 014463          183 QRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI  262 (424)
Q Consensus       183 ~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~Gl  262 (424)
                           .+|||.+|.++|||||+++++++++.++.+++|+||+||||||||+++|++|++.|+|||+|||++|+||||+||
T Consensus       205 -----~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gl  279 (454)
T PTZ00079        205 -----KWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGF  279 (454)
T ss_pred             -----CCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCC
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHH---HHHHHhc-CCcccCC----CCeeecCCcccccccceeeeccccCcccccccccc---cceEEEecCCCCCCH
Q 014463          263 DVPAL---LKYKKSN-KSLNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDP  331 (424)
Q Consensus       263 Di~~L---~~~~~~~-g~v~~~~----~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~  331 (424)
                      |+++|   .++++.+ +++.+|+    +++.++++++|+++||||+|||++|+||.+||+++   +||+|+||||+|+||
T Consensus       280 d~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~  359 (454)
T PTZ00079        280 TKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTI  359 (454)
T ss_pred             CHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCH
Confidence            99887   6677654 6777775    57789999999999999999999999999999988   999999999999999


Q ss_pred             HHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Q 014463          332 EADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTL  409 (424)
Q Consensus       332 eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~  409 (424)
                      +|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++++  ++++|+|||+.
T Consensus       360 eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~~~~~~r~~A~i~  439 (454)
T PTZ00079        360 EATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSDLVAGANIA  439 (454)
T ss_pred             HHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  58999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 014463          410 GVNRVAQATLLRGW  423 (424)
Q Consensus       410 A~~rv~~a~~~rg~  423 (424)
                      |++||++||..|||
T Consensus       440 ~~~rva~Am~~~G~  453 (454)
T PTZ00079        440 GFLKVADSMIEQGC  453 (454)
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999997

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.1e-105  Score=808.34  Aligned_cols=387  Identities=51%  Similarity=0.805  Sum_probs=365.3

Q ss_pred             HHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 014463           23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK  102 (424)
Q Consensus        23 ~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaK  102 (424)
                      .++.+|..|+|+++|++||.+|+|+.+|+.||||||+.+|||+||||||||++++|++++||+.||||||+.++|+||||
T Consensus        66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK  145 (514)
T KOG2250|consen   66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK  145 (514)
T ss_pred             hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence            34557888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhh
Q 014463          103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEK  182 (424)
Q Consensus       103 ggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~  182 (424)
                      |||.+||+.+|.+|+||++|+|+++|.++|||.+|+|+|||||+++||.|++++|++.+|++++++||||+         
T Consensus       146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i---------  216 (514)
T KOG2250|consen  146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPI---------  216 (514)
T ss_pred             CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCC---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999         


Q ss_pred             hhccccCCCCCCCCchhHHHHHHHHHHHHHHhC--CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCC
Q 014463          183 QRNKNDLGGSLGREAATGLGVFFATEALLAEHG--KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPN  260 (424)
Q Consensus       183 ~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~  260 (424)
                           .+|||.+|.+||||||+++++.++++++  .+++|+||+||||||||++++++|++.|+++|+|+|++|+|+||+
T Consensus       217 -----~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~  291 (514)
T KOG2250|consen  217 -----SLGGSHGRYEATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPD  291 (514)
T ss_pred             -----ccCCccCcccccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCC
Confidence                 9999999999999999999999999887  669999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCcccCCCCeeecCC-------cccccccceeeeccccCcccccccccccce---EEEecCCCCCC
Q 014463          261 GIDVPALLKYKKSNKSLNDFQGGNAMDLN-------DLLVHECDVLVPCALGGVLNKENAADVKAK---FIIEAANHPTD  330 (424)
Q Consensus       261 GlDi~~L~~~~~~~g~v~~~~~~~~i~~~-------~ll~~~~DIliPaA~~~~It~~na~~i~ak---iIvEgAN~p~t  330 (424)
                      |||+.+|.+++++++++.+|++++...+.       .+|..+||||+|||.+|+||.+||..+.++   +||||||+|+|
T Consensus       292 Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptT  371 (514)
T KOG2250|consen  292 GIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTT  371 (514)
T ss_pred             CCCHHHHHHHHHhhccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCC
Confidence            99999999999999999999988755443       678899999999999999999999999666   99999999999


Q ss_pred             HHHHHHHHhCCceEeccccccccCcchhhHHHhhhcc-------ccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHcC
Q 014463          331 PEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEEKVNHELKRYMMSAFKDI----KTMCQTHN  399 (424)
Q Consensus       331 ~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~  399 (424)
                      |||+++|.++||+++||..||+|||++|||||+||++       .+.|++|.|.+.|.+.|...+...    ++.+++++
T Consensus       372 peA~~vlek~gv~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~  451 (514)
T KOG2250|consen  372 PEADEVLEKAGVLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFK  451 (514)
T ss_pred             hhHHHHHHhCCeEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhh
Confidence            9999999999999999999999999999999999999       689999999999999877777666    54444322


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          400 --------CNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       400 --------~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                              .+++..|++.++.|++++|..+|+
T Consensus       452 ~~~~~~~~~~lv~gal~~~~~kva~ai~~~g~  483 (514)
T KOG2250|consen  452 DRIQGTSEKDLVHGALIATFNKVARAITDQGD  483 (514)
T ss_pred             hhhcCCCchHHhhhhHHHHHHHHHHHHHHHHH
Confidence                    388899999999999999988874

>PTZ00324 glutamate dehydrogenase 2; Provisional

Probab=100.00  E-value=1.3e-83  Score=703.86  Aligned_cols=365  Identities=24%  Similarity=0.295  Sum_probs=343.0

Q ss_pred             cCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecC-----------CCHHHHHHHHHH
Q 014463           18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQL   86 (424)
Q Consensus        18 ~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~-----------~t~~ev~~LA~~   86 (424)
                      .++||+.++.|..|++.+.+.+|+    |  ..|+|||+||+.+   +||||||||+           ++++|+++||+|
T Consensus       459 Frldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~t  529 (1002)
T PTZ00324        459 FRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAST  529 (1002)
T ss_pred             EeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHH
Confidence            379999999999999999999999    4  8999999999998   9999999998           889999999999


Q ss_pred             HHHHHhhcCCCCCCceeEEecCCCCCCH---HHHHHHHHHHHHHHhhccCCCCcc-----------ccCCCCCCHHHHHH
Q 014463           87 MTWKTAVAAIPYGGAKGGIGCNPRELSM---SELERLTRVFTQKIHDLIGIHRDV-----------PAPDMGTNSQTMAW  152 (424)
Q Consensus        87 Mt~K~Al~~lp~GGaKggI~~dP~~~s~---~e~e~~~r~~~~~l~~~iG~~~di-----------~apDvgt~~~~m~~  152 (424)
                      ||||||  +||+|||||||++||+.+++   .|+|+++|+|+++|.+++||..||           ||||+||+++.|+|
T Consensus       530 qt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdw  607 (1002)
T PTZ00324        530 QLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDW  607 (1002)
T ss_pred             HHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHH
Confidence            999997  99999999999999999887   889999999999999999999998           99999999999999


Q ss_pred             HHHHhhhhhCCC--CceecCCCcchhhhhhhhhhccccCCCCCCCC-chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe--
Q 014463          153 ILDEYSKFHGHS--PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE-AATGLGVFFATEALLAEHGKSISNMKFAIQG--  227 (424)
Q Consensus       153 i~d~~~~~~g~~--~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~-~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG--  227 (424)
                      | ++|++.+|++  ++++||||.              .+||+.++. ++||+||+++++++++++|+++++.||++||  
T Consensus       608 a-~~~s~~rG~~~~~af~TGKp~--------------~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp  672 (1002)
T PTZ00324        608 A-ALHAKKRGYPFWKSFTTGKSP--------------SMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGP  672 (1002)
T ss_pred             H-HHHHHHcCCCCCCCEEeCCCc--------------ccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCC
Confidence            9 8999999985  899999999              999999998 9999999999999999999999999999999  


Q ss_pred             cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC---------------------CCeee
Q 014463          228 FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ---------------------GGNAM  286 (424)
Q Consensus       228 fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~---------------------~~~~i  286 (424)
                      ||+||++.++++.   +|||||+|++|++|||+|||+++|.+++++++++.+|+                     +++.+
T Consensus       673 ~GDVGgN~~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i  749 (1002)
T PTZ00324        673 DGDLGSNELLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIV  749 (1002)
T ss_pred             CchHHHHHHHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCcccee
Confidence            9999999999874   79999999999999999999999999999998998653                     22222


Q ss_pred             -----cCCcc---cccccceeeeccc-cCccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          287 -----DLNDL---LVHECDVLVPCAL-GGVLNKENA--------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       287 -----~~~~l---l~~~~DIliPaA~-~~~It~~na--------~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                           .++++   +.++||||||||. +++||++|+        .+++||+||||||+|+||+|+.+|++|||+++||++
T Consensus       750 ~~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~l  829 (1002)
T PTZ00324        750 ESGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDAS  829 (1002)
T ss_pred             ccccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcch
Confidence                 23444   5789999999998 999999999        789999999999999999999999999999999999


Q ss_pred             ccccCcchhhHHHhhhcc------------------ccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          350 ANSGGVTVSYFEWVQNIQ------------------GFMWE--EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       350 aNaGGVi~s~~E~~qn~~------------------~~~w~--~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                      +|+|||++|||||+||++                  ..+|+  .++|+++|+++|...++.|++.+++.++++|+||..+
T Consensus       830 aNsGGV~~S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~l  909 (1002)
T PTZ00324        830 ANKGGVTSSSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVL  909 (1002)
T ss_pred             hcCCCcEeeHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            999999999999999998                  78899  8999999999999999999999999999999999977


Q ss_pred             HH
Q 014463          410 GV  411 (424)
Q Consensus       410 A~  411 (424)
                      ..
T Consensus       910 S~  911 (1002)
T PTZ00324        910 SR  911 (1002)
T ss_pred             HH
Confidence            54

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=100.00  E-value=4.3e-73  Score=548.65  Aligned_cols=241  Identities=32%  Similarity=0.501  Sum_probs=231.8

Q ss_pred             cCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 014463          169 TGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA  248 (424)
Q Consensus       169 tGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa  248 (424)
                      ||||+              .+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||+
T Consensus         1 TGKp~--------------~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~Gakvva   66 (254)
T cd05313           1 TGKGL--------------SWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVT   66 (254)
T ss_pred             CCCCC--------------cCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            89999              9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCceeCCCCCCHHHH---HHHHHhcCC-cccCC----CCeeecCCcccccccceeeeccccCcccccccccc---c
Q 014463          249 VSDITGAIKNPNGIDVPAL---LKYKKSNKS-LNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---K  317 (424)
Q Consensus       249 VsD~~G~i~~~~GlDi~~L---~~~~~~~g~-v~~~~----~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i---~  317 (424)
                      |||++|++|||+|||+++|   .++++++++ +.+|+    +++.++++++|+++||||+|||++++||++||+++   +
T Consensus        67 VsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~  146 (254)
T cd05313          67 LSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNG  146 (254)
T ss_pred             EECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcC
Confidence            9999999999999999988   566766665 45553    67889999999999999999999999999999999   8


Q ss_pred             ceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014463          318 AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQT  397 (424)
Q Consensus       318 akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~  397 (424)
                      ||+|+||||+|+||+|+++|++|||+|+||+++|+||||+|||||+||+++++|++|+|+++|+++|.++|+++++++++
T Consensus       147 ak~I~EgAN~p~t~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~  226 (254)
T cd05313         147 CKYVAEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKK  226 (254)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          398 HN--CNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       398 ~~--~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++  ++||+|||++|++||++||+.||+
T Consensus       227 ~~~~~~lr~aA~~~a~~rv~~a~~~rG~  254 (254)
T cd05313         227 YGDPPDLVAGANIAGFLKVADAMLAQGV  254 (254)
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99  899999999999999999999996

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=1.1e-65  Score=496.56  Aligned_cols=233  Identities=50%  Similarity=0.850  Sum_probs=223.9

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALL  268 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~  268 (424)
                      |||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus         1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~   80 (244)
T PF00208_consen    1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL   80 (244)
T ss_dssp             TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence            8999999999999999999999998876 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC-cccCC-----CCeeecCC-cccccccceeeeccccCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 014463          269 KYKKSNKS-LNDFQ-----GGNAMDLN-DLLVHECDVLVPCALGGVLNKENAA-DVK--AKFIIEAANHPTDPEADEILS  338 (424)
Q Consensus       269 ~~~~~~g~-v~~~~-----~~~~i~~~-~ll~~~~DIliPaA~~~~It~~na~-~i~--akiIvEgAN~p~t~eA~~iL~  338 (424)
                      +++++.++ +..|+     +.+.++++ ++|+++||||+|||++++||++|++ .++  ||+||||||+|+||+|+++|+
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~  160 (244)
T PF00208_consen   81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR  160 (244)
T ss_dssp             HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred             HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence            99999998 99998     56788884 9999999999999999999999999 999  999999999999999999999


Q ss_pred             hCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014463          339 KKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQAT  418 (424)
Q Consensus       339 ~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~  418 (424)
                      +|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.++++++++.|+++++++|+|||++|++||++||
T Consensus       161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~  240 (244)
T PF00208_consen  161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM  240 (244)
T ss_dssp             HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC
Q 014463          419 LLRG  422 (424)
Q Consensus       419 ~~rg  422 (424)
                      +.||
T Consensus       241 ~~rG  244 (244)
T PF00208_consen  241 KLRG  244 (244)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            9998

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=100.00  E-value=5.5e-62  Score=466.31  Aligned_cols=226  Identities=54%  Similarity=0.894  Sum_probs=222.1

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK  269 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~  269 (424)
                      |||.+|.++|||||++++++++++++.+++++||+|||||+||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus         1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~   80 (227)
T cd01076           1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA   80 (227)
T ss_pred             CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence            79999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          270 YKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       270 ~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                      ++++++++..|++++.++++++++.+||||||||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus        81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~  160 (227)
T cd01076          81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL  160 (227)
T ss_pred             HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence            99999999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463          350 ANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA  415 (424)
Q Consensus       350 aNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  415 (424)
                      +|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||+
T Consensus       161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~  226 (227)
T cd01076         161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA  226 (227)
T ss_pred             hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999996

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=4.5e-61  Score=457.03  Aligned_cols=217  Identities=40%  Similarity=0.646  Sum_probs=212.0

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      +|||||++++++++++++.+++|+||+||||||||+++|++|+++|+++|+|||++|++||| |||++++++++++.+++
T Consensus         1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~   79 (217)
T cd05211           1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS   79 (217)
T ss_pred             CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence            69999999999999999989999999999999999999999999999999999999999999 99999999999988999


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcch
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTV  357 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~  357 (424)
                      ..|+.++.+++++++..+||||||||++++||++|+++++||+|+|+||+|+|++++++|++|||+|+||+++|+|||++
T Consensus        80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~  159 (217)
T cd05211          80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV  159 (217)
T ss_pred             cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence            99987777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463          358 SYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA  415 (424)
Q Consensus       358 s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  415 (424)
                      |||||+||.++++|++++|.++++++|.++++++++.++++++++|+|||++|++||+
T Consensus       160 s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva  217 (217)
T cd05211         160 SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA  217 (217)
T ss_pred             EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999985

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=9.6e-48  Score=338.16  Aligned_cols=130  Identities=52%  Similarity=0.895  Sum_probs=124.4

Q ss_pred             CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCC
Q 014463           31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPR  110 (424)
Q Consensus        31 p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~  110 (424)
                      |+|+++|+|||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus         1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~   80 (131)
T PF02812_consen    1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK   80 (131)
T ss_dssp             -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred             CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463          111 ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus       111 ~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++|..|+|+++|+|+++|.+++|+..|||||||||+++||+||+|+|+++
T Consensus        81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~  130 (131)
T PF02812_consen   81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV  130 (131)
T ss_dssp             GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence            99999999999999999999999999999999999999999999999864

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=5.2e-44  Score=336.10  Aligned_cols=194  Identities=27%  Similarity=0.429  Sum_probs=177.7

Q ss_pred             chhHHHHHHHHHHHHHHh--CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          197 AATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+||+||+++++++++++  +.+++|++|+|||||+||+++++.|.+.|++|+ ++|.+          .+++.++++..
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~~   71 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAELF   71 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHHc
Confidence            699999999999999975  778999999999999999999999999999999 88864          45565555532


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCceEecccccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTD-PEADEILSKKGVVILPDIYANSG  353 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~eA~~iL~~rGI~viPD~laNaG  353 (424)
                             +++.+++++++..+|||++|||++++||++|+++++||+|+|+||+|+| ++++++|+++||+|+||+++|+|
T Consensus        72 -------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaG  144 (200)
T cd01075          72 -------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAG  144 (200)
T ss_pred             -------CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCc
Confidence                   3566778899999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             CcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463          354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA  415 (424)
Q Consensus       354 GVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~  415 (424)
                      ||++|||||+|+.      +++++++++.+ .+++.++++.++++++++|+|||.+|++||.
T Consensus       145 Gv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~  199 (200)
T cd01075         145 GLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA  199 (200)
T ss_pred             CceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence            9999999999863      67899999986 8899999999999999999999999999985

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Probab=99.97  E-value=6.5e-31  Score=222.25  Aligned_cols=100  Identities=43%  Similarity=0.675  Sum_probs=96.2

Q ss_pred             cceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHH
Q 014463          296 CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEK  375 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~  375 (424)
                      ||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|+.++   ++++
T Consensus         3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~   79 (102)
T smart00839        3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE   79 (102)
T ss_pred             cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998874   8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Q 014463          376 VNHELKRYMMSAFKDIKTMCQTH  398 (424)
Q Consensus       376 v~~~l~~~m~~~~~~v~~~a~~~  398 (424)
                      |..++.++|.+++.++++.++++
T Consensus        80 v~~~~~~~i~~~~~~v~~~a~~~  102 (102)
T smart00839       80 VFTDLSEIMRNALEEIFETAQKY  102 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999998753

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.

>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]

Probab=99.97  E-value=2.9e-29  Score=277.97  Aligned_cols=338  Identities=23%  Similarity=0.269  Sum_probs=238.6

Q ss_pred             CCChHHHHhhcC--CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCC-CCCCeeeecCCC---HHHHHHHHHHHHHHHh
Q 014463           19 GLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGP-MKGGIRYHPEVD---PDEVNALAQLMTWKTA   92 (424)
Q Consensus        19 ~~~~~~~~~l~~--p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GP-akGGiR~~~~~t---~~ev~~LA~~Mt~K~A   92 (424)
                      ++||..++-|..  |.++|.|.-|         -|+|++.    ..|| |+|||||+ +..   .+|++.|++.|+.|| 
T Consensus       760 K~dps~i~~lp~P~Py~eIFVyg~---------~vEGvHL----RFg~VARGGLRws-DR~~D~rtEvlgLvKAQqvKN-  824 (1592)
T COG2902         760 KFDPSLIDELPYPRPYREIFVYGP---------EVEGVHL----RFGPVARGGLRWS-DRNQDFRTEVLGLVKAQQVKN-  824 (1592)
T ss_pred             EeChhhcCCCCCCCcceEEEEEcC---------cceEEEe----ecccccccccccc-ccchhHHHHHHHHHHHHHhcC-
Confidence            577887776664  7788877744         3688544    4566 99999998 444   569999999999999 


Q ss_pred             hcCCCCCCceeEEecCC--CCCCHHHH----HHHHHHHHHHHhhcc-----C----C------CCc----cccCCCCCCH
Q 014463           93 VAAIPYGGAKGGIGCNP--RELSMSEL----ERLTRVFTQKIHDLI-----G----I------HRD----VPAPDMGTNS  147 (424)
Q Consensus        93 l~~lp~GGaKggI~~dP--~~~s~~e~----e~~~r~~~~~l~~~i-----G----~------~~d----i~apDvgt~~  147 (424)
                       +.||-+|||||+.+.+  ..-+.+|+    ...++.|++.|.+++     +    |      +.|    +.|||-||..
T Consensus       825 -avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAt  903 (1592)
T COG2902         825 -AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTAT  903 (1592)
T ss_pred             -CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCccc
Confidence             4588899999998764  34466554    234567777665431     1    1      111    5699999951


Q ss_pred             HHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeE
Q 014463          148 QTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKF  223 (424)
Q Consensus       148 ~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~v  223 (424)
                       --+| +...++.+|+    +-|+..              ..|||.|.+    +.|++|++++++..++++|.+++...|
T Consensus       904 -FsD~-AN~vA~~~~f----wl~DAF--------------aSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~f  963 (1592)
T COG2902         904 -FSDI-ANSVAREYGF----WLGDAF--------------ASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPF  963 (1592)
T ss_pred             -HHHH-HHHHHHHhCC----Chhhhh--------------hcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCce
Confidence             2222 2223344444    444444              455555543    599999999999999999999999999


Q ss_pred             EEEecChHHHHHH--HHHHHCCCEEEEEEcCCCceeCC-CCCCHHHHHH---HHHhcCCcccCCC------Ce-------
Q 014463          224 AIQGFGNVGSWAA--KFFHEHGGKVVAVSDITGAIKNP-NGIDVPALLK---YKKSNKSLNDFQG------GN-------  284 (424)
Q Consensus       224 aIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~i~~~-~GlDi~~L~~---~~~~~g~v~~~~~------~~-------  284 (424)
                      .+.|.|.+.+-+.  .+|..+-.+.||+.|+++.++|| -++|...+.+   +...+.++.+|..      +.       
T Consensus       964 TvvgiGdmsGDVfgNgMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K 1043 (1592)
T COG2902         964 TVVGIGDMSGDVFGNGMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAK 1043 (1592)
T ss_pred             EEEeeCCCCccccccceeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeecc
Confidence            9988654443333  56777778899999999999999 5788777766   4445567777741      11       


Q ss_pred             -----------------eecCCc----cccccc--------ceeeecccc-Cccccccc--------ccccceEEEecCC
Q 014463          285 -----------------AMDLND----LLVHEC--------DVLVPCALG-GVLNKENA--------ADVKAKFIIEAAN  326 (424)
Q Consensus       285 -----------------~i~~~~----ll~~~~--------DIliPaA~~-~~It~~na--------~~i~akiIvEgAN  326 (424)
                                       .++|.+    +|..++        |.+|||..+ |.++.+||        .+++||+|+||||
T Consensus      1044 ~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaN 1123 (1592)
T COG2902        1044 AITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGAN 1123 (1592)
T ss_pred             ccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeeccc
Confidence                             122232    345444        556677763 44555544        3579999999999


Q ss_pred             CCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhcc------ccCCCHHHHHHHHHHHHHHHHHHHHH
Q 014463          327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ------GFMWEEEKVNHELKRYMMSAFKDIKT  393 (424)
Q Consensus       327 ~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~------~~~w~~e~v~~~l~~~m~~~~~~v~~  393 (424)
                      ..+|+.++-.|.++|..+..|++.|+|||.||..|..-.+.      .-..+.++.+.-|++ |++.+.+++.
T Consensus      1124 LgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVniKIal~~a~~~g~l~~~~Rn~Llas-mtdeV~~lVl 1195 (1592)
T COG2902        1124 LGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVNIKIALNSAVFAGKLTRGERNALLAS-MTDEVASLVL 1195 (1592)
T ss_pred             ccccchhHHHHHHcCCeecchhhcccCCCcccchhhhhHHhhhhhhhcCCcchhhHHHHHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999999999864321      224566777777776 7777766553

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=99.96  E-value=3.6e-28  Score=278.92  Aligned_cols=368  Identities=23%  Similarity=0.248  Sum_probs=268.4

Q ss_pred             CCChHHHHhhcC--CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCC--CHHHHHHHHHHHHHHHhhc
Q 014463           19 GLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEV--DPDEVNALAQLMTWKTAVA   94 (424)
Q Consensus        19 ~~~~~~~~~l~~--p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~--t~~ev~~LA~~Mt~K~Al~   94 (424)
                      +++|..+..+..  |.++|.|.-|         -|+|++......   |+|||||+...  -..||+.|+++|+.||  +
T Consensus       698 Kldp~~l~~~p~P~P~~eifV~s~---------~~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--a  763 (1528)
T PF05088_consen  698 KLDPSFLPDLPEPRPYFEIFVYSP---------RFEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--A  763 (1528)
T ss_pred             EEcHHHcCCCCCCCCcEEEEEECC---------ceEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--C
Confidence            466777666654  6666666544         368977766553   99999996432  2579999999999999  5


Q ss_pred             CCCCCCceeEEecCCCCC--CHH----HHHHHHHHHHHHHhhc---------cCCC------Cc----cccCCCCCCHHH
Q 014463           95 AIPYGGAKGGIGCNPREL--SMS----ELERLTRVFTQKIHDL---------IGIH------RD----VPAPDMGTNSQT  149 (424)
Q Consensus        95 ~lp~GGaKggI~~dP~~~--s~~----e~e~~~r~~~~~l~~~---------iG~~------~d----i~apDvgt~~~~  149 (424)
                      .||-||||||++++....  +..    |-...++.|++.|.++         +.|.      .|    |.|.|-||.  .
T Consensus       764 vIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA--t  841 (1528)
T PF05088_consen  764 VIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA--T  841 (1528)
T ss_pred             cccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc--h
Confidence            689999999999865432  333    3345667777777665         2221      11    669999994  4


Q ss_pred             HHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeEEE
Q 014463          150 MAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAI  225 (424)
Q Consensus       150 m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~vaI  225 (424)
                      +.=++.+.+.-+|    ++.|+..              .+|||.|++    +.|++|.|.+++..++++|++++...|.|
T Consensus       842 fSD~AN~ia~~~g----fWLgDAF--------------ASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTv  903 (1528)
T PF05088_consen  842 FSDIANEIAAEYG----FWLGDAF--------------ASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTV  903 (1528)
T ss_pred             HHHHHHHHHHHcC----CCcchhh--------------hcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEE
Confidence            5555555555454    5777777              889998886    69999999999999999999999999999


Q ss_pred             EecChHHHHHH--HHHHHCCCEEEEEEcCCCceeCCCCCCHHHH----HHHHHh-cCCcccCCC----------------
Q 014463          226 QGFGNVGSWAA--KFFHEHGGKVVAVSDITGAIKNPNGIDVPAL----LKYKKS-NKSLNDFQG----------------  282 (424)
Q Consensus       226 qGfGnVG~~~a--~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L----~~~~~~-~g~v~~~~~----------------  282 (424)
                      .|.|.+++-+.  -+|..+-.|+||..|+.....||+. |++.=    .++++- +-++.+|..                
T Consensus       904 vGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKs  982 (1528)
T PF05088_consen  904 VGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKS  982 (1528)
T ss_pred             EEecCCCccccccchhcccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCC
Confidence            99999988888  5888889999999999999999997 54432    222332 236777641                


Q ss_pred             --------------CeeecCCc----ccccccceeeeccccCcc---ccc--------------ccccccceEEEecCCC
Q 014463          283 --------------GNAMDLND----LLVHECDVLVPCALGGVL---NKE--------------NAADVKAKFIIEAANH  327 (424)
Q Consensus       283 --------------~~~i~~~~----ll~~~~DIliPaA~~~~I---t~~--------------na~~i~akiIvEgAN~  327 (424)
                                    ...++|+|    +|.+++|+|+-..+|..|   ++.              |+..++||+|+||+|.
T Consensus       983 I~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNL 1062 (1528)
T PF05088_consen  983 IPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNL 1062 (1528)
T ss_pred             CCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEeccccc
Confidence                          11334444    578999999999999988   333              4556899999999999


Q ss_pred             CCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhc------cccCCCHHHHHHHHHHHHHHHHHHHH-HHH--HHc
Q 014463          328 PTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI------QGFMWEEEKVNHELKRYMMSAFKDIK-TMC--QTH  398 (424)
Q Consensus       328 p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~------~~~~w~~e~v~~~l~~~m~~~~~~v~-~~a--~~~  398 (424)
                      .+|+.++-.+..+|..+.-|++-||+||-||-.|..-.+      ..-..+.++-++.|++ |++.+.++. .-.  +..
T Consensus      1063 G~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNiKIll~~~~~~g~lt~~~Rn~lL~~-mtdeV~~lVL~~N~~Q~~ 1141 (1528)
T PF05088_consen 1063 GLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNIKILLNSLVRAGDLTRKERNKLLAS-MTDEVAELVLRDNYRQTL 1141 (1528)
T ss_pred             ccchHHHHHHHHcCCccchhhhcccCCCcCccchhhHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence            999999999999999999999999999999999974211      1224577888887877 676665533 221  111


Q ss_pred             CC---CHHHHHHHHHHHHHHHHHHHcC
Q 014463          399 NC---NLRMGAFTLGVNRVAQATLLRG  422 (424)
Q Consensus       399 ~~---~~r~aA~~~A~~rv~~a~~~rg  422 (424)
                      -+   ..+.+.+.--..|+.+.++.+|
T Consensus      1142 alsl~~~~~~~~~~~~~r~~~~Le~~g 1168 (1528)
T PF05088_consen 1142 ALSLAERRAAERLEEHQRLIERLEREG 1168 (1528)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHHHhcC
Confidence            12   2233344555667777776665

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.31  E-value=3.1e-12  Score=129.63  Aligned_cols=171  Identities=22%  Similarity=0.306  Sum_probs=115.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH--------CC--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC---Ceeec
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE--------HG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG---GNAMD  287 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~--------~G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~---~~~i~  287 (424)
                      .+|+||||||||++++++|.+        .|  .+|++|+|+++++|||+|+|++++++++++++++..|+.   ...++
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999999976        45  799999999999999999999999999999988887752   22345


Q ss_pred             CCccc-ccccceeeeccccCcccccccccccceEEEecCCCC------C--C-HHHHHHHHhCCceEecccccccc-Cc-
Q 014463          288 LNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP------T--D-PEADEILSKKGVVILPDIYANSG-GV-  355 (424)
Q Consensus       288 ~~~ll-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p------~--t-~eA~~iL~~rGI~viPD~laNaG-GV-  355 (424)
                      .++++ ..+|||+|.|.     +.+++..+.++++.+|-+.-      +  + ++..++.+++|+.+.-.  +|.+ |+ 
T Consensus        83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~e--a~v~~GiP  155 (336)
T PRK08374         83 PEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFE--ATVMAGTP  155 (336)
T ss_pred             HHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEe--ccccccCC
Confidence            66777 58999999775     34567666555555554432      1  1 23344566788877633  3333 33 


Q ss_pred             chhhH-HHh-----hhcccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          356 TVSYF-EWV-----QNIQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       356 i~s~~-E~~-----qn~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      +.+.+ +.+     +.+++. .=+-.-+..++++  ...|.+++..|++.|.
T Consensus       156 ii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy  205 (336)
T PRK08374        156 IIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI  205 (336)
T ss_pred             chHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence            22222 111     000110 1123345666653  5678999999998876

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.09  E-value=1.7e-10  Score=116.42  Aligned_cols=83  Identities=25%  Similarity=0.457  Sum_probs=68.7

Q ss_pred             CeEEEEecChHHHHHHHHHHH--------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE--------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL  292 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll  292 (424)
                      ++|+|||||+||+.++++|.+        .+.+||+|+|+++++|||+|||++++++++++ +++..++ .+.++.++++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll   78 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF   78 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence            379999999999999999987        36899999999999999999999999998876 6665553 1223456677


Q ss_pred             ccccceeeecccc
Q 014463          293 VHECDVLVPCALG  305 (424)
Q Consensus       293 ~~~~DIliPaA~~  305 (424)
                      ..++||+|+|+-.
T Consensus        79 ~~~~DVvVE~t~~   91 (326)
T PRK06392         79 EIKPDVIVDVTPA   91 (326)
T ss_pred             cCCCCEEEECCCC
Confidence            7899999999753

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.79  E-value=3.3e-08  Score=100.56  Aligned_cols=177  Identities=23%  Similarity=0.333  Sum_probs=110.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-eecCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLN  289 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-~i~~~  289 (424)
                      .+|+|+|+|+||+.+++.|.+.          +.+|++|+|+++.+|+++|+|++++.++.+..+.+..|++.. ..+.+
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            5899999999999999999765          589999999999999999999999999888777666665332 12445


Q ss_pred             ccc-ccccceeeeccccCcccccccc----c-c--cceEEEecCC-CCC---CHHHHHHHHhCCceEeccccccccCcch
Q 014463          290 DLL-VHECDVLVPCALGGVLNKENAA----D-V--KAKFIIEAAN-HPT---DPEADEILSKKGVVILPDIYANSGGVTV  357 (424)
Q Consensus       290 ~ll-~~~~DIliPaA~~~~It~~na~----~-i--~akiIvEgAN-~p~---t~eA~~iL~~rGI~viPD~laNaGGVi~  357 (424)
                      +++ +.++||+|.|...+.-+.+.+.    . +  +..+|++  | .|+   -++-.+..+++|+.+.-.-...+|=-+.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta--NK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii  160 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS--NKGPLALAYKELKELAKKNGVRFRYEATVGGAMPII  160 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC--CcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence            666 4679999999765433222211    1 2  3445553  3 343   2444556678888776332222222222


Q ss_pred             hhH-HHhhh-----ccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          358 SYF-EWVQN-----IQG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       358 s~~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      ..+ +.+..     +++ +.=+-.-+..++++. ...|.+++..|++.|.
T Consensus       161 ~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~  209 (341)
T PRK06270        161 NLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY  209 (341)
T ss_pred             HHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence            221 22110     000 011223455555321 4678999999998886

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.69  E-value=1.4e-07  Score=76.95  Aligned_cols=84  Identities=31%  Similarity=0.370  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      +||+|++..++...+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+                         
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------   55 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------   55 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence            4899999999999888888899999999999999999999999986555557766                         


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCccccc--ccccccceEEEecC
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKE--NAADVKAKFIIEAA  325 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~--na~~i~akiIvEgA  325 (424)
                                         |++|+|...+.+..+  +....+..+|++.|
T Consensus        56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence                               999999987766655  56666777887764

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02700 homoserine dehydrogenase family protein

Probab=98.21  E-value=3.8e-06  Score=86.41  Aligned_cols=61  Identities=21%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-------C--CEEEEEEcCCCceeCCC----CCCHHHHHH---HHHhcCCcccC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-------G--GKVVAVSDITGAIKNPN----GIDVPALLK---YKKSNKSLNDF  280 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-------G--akVVaVsD~~G~i~~~~----GlDi~~L~~---~~~~~g~v~~~  280 (424)
                      -.+|+|.|+|+||+.+++.|.++       |  .+|++|+|+++.++|++    |||++.+.+   .+.+...+..|
T Consensus         3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~   79 (377)
T PLN02700          3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL   79 (377)
T ss_pred             EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence            45789999999999999987542       3  58999999999999965    999888766   33444444444

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.02  E-value=2.1e-05  Score=80.33  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=56.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND  290 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~  290 (424)
                      .+|+|.|||+||+.++++|.++          ..+|++|+|+++.+++++|+|++.+++.......+..|.   ....++
T Consensus         3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~   79 (346)
T PRK06813          3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE   79 (346)
T ss_pred             eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence            5899999999999999998653          258999999999999999999988665432211111211   011222


Q ss_pred             cc--ccccceeeeccc
Q 014463          291 LL--VHECDVLVPCAL  304 (424)
Q Consensus       291 ll--~~~~DIliPaA~  304 (424)
                      ++  ..++||+|.|.-
T Consensus        80 ~~~~~~~~dVvVe~T~   95 (346)
T PRK06813         80 RATDNISGTVLVESTV   95 (346)
T ss_pred             HhcCCCCCCEEEECCC
Confidence            22  236899998853

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.97  E-value=3e-05  Score=78.44  Aligned_cols=78  Identities=27%  Similarity=0.380  Sum_probs=55.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL  288 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~  288 (424)
                      +-.+|+|.|||+||+.++++|.++          ..+|++|+|+++..+.  ++|...+ +.+...+...       .+.
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~   71 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD   71 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence            346899999999999999999864          3699999999998775  4454443 3333222221       223


Q ss_pred             CcccccccceeeeccccC
Q 014463          289 NDLLVHECDVLVPCALGG  306 (424)
Q Consensus       289 ~~ll~~~~DIliPaA~~~  306 (424)
                      +.+...+.||++++...+
T Consensus        72 ~~~~~~~~dvvve~~~~d   89 (333)
T COG0460          72 EVLLDEDIDVVVELVGGD   89 (333)
T ss_pred             hhhccccCCEEEecCccc
Confidence            445678899999997654

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.79  E-value=0.00015  Score=66.40  Aligned_cols=120  Identities=25%  Similarity=0.374  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      ||.+++.++.   +..+..+.|++++|.|||.||+.+|+.|+..|++|+ |+|.+-         +..|.++.      .
T Consensus         5 ~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~DP---------i~alqA~~------d   65 (162)
T PF00670_consen    5 TGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEIDP---------IRALQAAM------D   65 (162)
T ss_dssp             HHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SSH---------HHHHHHHH------T
T ss_pred             cchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECCh---------HHHHHhhh------c
Confidence            4555544443   345677999999999999999999999999999997 998841         33333322      2


Q ss_pred             cCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCCCC-CCHHHH-HHHHhCCce
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHP-TDPEAD-EILSKKGVV  343 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p-~t~eA~-~iL~~rGI~  343 (424)
                      +|   +..+-++.+ ..+||||-|.. .++|+.+-..+++=..|+  +|.. .+.|.+ +.|.+.++.
T Consensus        66 Gf---~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail--~n~Gh~d~Eid~~~L~~~~~~  127 (162)
T PF00670_consen   66 GF---EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAIL--ANAGHFDVEIDVDALEANAVE  127 (162)
T ss_dssp             T----EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEE--EESSSSTTSBTHHHHHTCTSE
T ss_pred             Cc---EecCHHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEE--eccCcCceeEeeccccccCcE
Confidence            33   233333444 37899998765 356787777777554444  2222 233333 346666543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.74  E-value=0.0009  Score=59.37  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463          206 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA  285 (424)
Q Consensus       206 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~  285 (424)
                      +++.++++.+.+++++++.|.|.|.+|+.+++.|.+.|...|.+.|.+          .+.+.+..++.+.- .. ....
T Consensus         5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~~   72 (155)
T cd01065           5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIAY   72 (155)
T ss_pred             HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-ceee
Confidence            445556666777889999999999999999999998874444477764          23333333321110 00 0011


Q ss_pred             ecCCcccccccceeeeccccCcccccccc----cc-cceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 014463          286 MDLNDLLVHECDVLVPCALGGVLNKENAA----DV-KAKFIIEAANHPTDPEADEILSKKGVVILPD  347 (424)
Q Consensus       286 i~~~~ll~~~~DIliPaA~~~~It~~na~----~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD  347 (424)
                      .+.+++ -.++|++|-|.-....+.++..    .+ .-++|++-+-.|...+..+.++++|+.++|.
T Consensus        73 ~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g  138 (155)
T cd01065          73 LDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG  138 (155)
T ss_pred             cchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence            122232 3579999998765554111111    11 3456777665554227778889999987764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.65  E-value=0.00048  Score=68.65  Aligned_cols=125  Identities=24%  Similarity=0.337  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      ..|+.+.+.   .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++|+ +.|.+.          +++....+.   
T Consensus       131 ~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~~---  193 (287)
T TIGR02853       131 IPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITEM---  193 (287)
T ss_pred             HhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHHC---
Confidence            467776643   445556778999999999999999999999999999887 777642          222222211   


Q ss_pred             cccCCCCeeecCCcc--cccccceeeeccccCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 014463          277 LNDFQGGNAMDLNDL--LVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-DPEADEILSKKGVVIL  345 (424)
Q Consensus       277 v~~~~~~~~i~~~~l--l~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-t~eA~~iL~~rGI~vi  345 (424)
                           +...++.+++  +-.++|++|-|.-...++.+..+.++ -.+|++-+..|- |+=  +..+++|+..+
T Consensus       194 -----g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~  259 (287)
T TIGR02853       194 -----GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL  259 (287)
T ss_pred             -----CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence                 1122222222  12489999988755566766665553 358888888884 443  56789998765

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.50  E-value=0.00026  Score=79.93  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463          213 EHGKSISNMKFAIQGFGNVGSWAAKFFHEH---------GGKVVAVSDITGAIKNPNGIDVPALLKYKK  272 (424)
Q Consensus       213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~  272 (424)
                      .+-.+-+..+|+|.|||+||+.+++.|.++         ..+|++|+|+++.+++|+|+|...+.+...
T Consensus       458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~  526 (819)
T PRK09436        458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA  526 (819)
T ss_pred             HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh
Confidence            333344678999999999999999998643         357999999999999999999887665444

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.43  E-value=0.0026  Score=63.46  Aligned_cols=168  Identities=20%  Similarity=0.278  Sum_probs=95.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D  297 (424)
                      ++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +++++.+.  ++|
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d   61 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR   61 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence            379999999999999999999999986 56664          2333333322 1       1111 23444432  367


Q ss_pred             eeeeccccCccccccccc----c-cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcchhh-----------
Q 014463          298 VLVPCALGGVLNKENAAD----V-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTVSY-----------  359 (424)
Q Consensus       298 IliPaA~~~~It~~na~~----i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~laNaGGVi~s~-----------  359 (424)
                      +++-|.-.....++.+..    + .-++|+...+. | .+.+..+.++++|+.++ | ...+||+...-           
T Consensus        62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a~~g~~~~~gG~~  139 (301)
T PRK09599         62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGLERGYCLMIGGDK  139 (301)
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHHhcCCeEEecCCH
Confidence            766664433222222222    2 22577777665 4 35566688999999998 6 56666653211           


Q ss_pred             --HHHhhhc----cc-----cCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014463          360 --FEWVQNI----QG-----FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL  409 (424)
Q Consensus       360 --~E~~qn~----~~-----~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~  409 (424)
                        ||-++.+    ..     ..+        .-+.+++-+.--+..++.|-+..+++  .|+++.+...++
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~  210 (301)
T PRK09599        140 EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVW  210 (301)
T ss_pred             HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence              2222111    00     000        01223333444445667788888888  888887766554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.38  E-value=0.0056  Score=63.95  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC
Q 014463          202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ  281 (424)
Q Consensus       202 Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~  281 (424)
                      ++..+.-+.++..-.+|++++|.|+|.|.+|.-+|+.|+++|.+-|.|+..+          .+...++.++-+      
T Consensus       160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------  223 (414)
T COG0373         160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------  223 (414)
T ss_pred             chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence            3444444555544445999999999999999999999999998777799875          455555555543      


Q ss_pred             CCeeecCCccc--ccccceeeec--cccCcccccccccc-cc---eEEEecCCCCC-CHHHHHHHHhCCceEeccccccc
Q 014463          282 GGNAMDLNDLL--VHECDVLVPC--ALGGVLNKENAADV-KA---KFIIEAANHPT-DPEADEILSKKGVVILPDIYANS  352 (424)
Q Consensus       282 ~~~~i~~~~ll--~~~~DIliPa--A~~~~It~~na~~i-~a---kiIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNa  352 (424)
                       ++.++-+++.  -.++||+|-|  |...+|+.++.... +.   .+|++-||.+. .|+... |  .||.+.       
T Consensus       224 -~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~-l--~~v~l~-------  292 (414)
T COG0373         224 -AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE-L--PNVFLY-------  292 (414)
T ss_pred             -CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC-c--CCeEEE-------
Confidence             3444445544  3589999998  56778898888764 22   39999999763 443210 1  111110       


Q ss_pred             cCcchhhHHHh--hhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014463          353 GGVTVSYFEWV--QNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCN  401 (424)
Q Consensus       353 GGVi~s~~E~~--qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~  401 (424)
                         .+..++-+  .|..    ..++...+.+.+|.+.+.+.++.-+...+.
T Consensus       293 ---~iDDL~~iv~~n~~----~R~~~~~~ae~iIeee~~~~~~~l~~~~~~  336 (414)
T COG0373         293 ---TIDDLEEIVEENLE----ARKEEAAKAEAIIEEELAEFMEWLKKLEVV  336 (414)
T ss_pred             ---ehhhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence               01111111  1111    123445556667777777777777666653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.28  E-value=0.001  Score=70.46  Aligned_cols=108  Identities=19%  Similarity=0.326  Sum_probs=68.6

Q ss_pred             HHHHHHHH-HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          200 GLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       200 g~Gv~~~~-~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      .+|...++ ...++..+..+.|++|+|+|+|++|+.+|+.|...|++|+ ++|.+.          .........     
T Consensus       233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~~-----  296 (476)
T PTZ00075        233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAME-----  296 (476)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHhc-----
Confidence            34444333 4455566788999999999999999999999999999987 666532          111111111     


Q ss_pred             cCCCCeeecCCcccccccceeeeccc-cCcccccccccccce-EEEecCCC
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAK-FIIEAANH  327 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~ak-iIvEgAN~  327 (424)
                         +.+..+-++++ ..+||++.|.. .+.|+.+....++-. +++..+-+
T Consensus       297 ---G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        297 ---GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ---CceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence               22233334444 37999999864 456777777666543 44444433

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.28  E-value=0.0021  Score=64.30  Aligned_cols=125  Identities=24%  Similarity=0.311  Sum_probs=75.8

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      .+|+.|   ++..+++..+.++.+++|.|.|+|.+|+.++..|...|++|+ ++|.+          .+++.. .++.  
T Consensus       132 ~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~-~~~~--  194 (296)
T PRK08306        132 IPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLAR-ITEM--  194 (296)
T ss_pred             HhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHH-HHHc--
Confidence            467777   445566777788899999999999999999999999999877 66764          122222 1221  


Q ss_pred             cccCCCCeeecCCccc--ccccceeeeccccCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 014463          277 LNDFQGGNAMDLNDLL--VHECDVLVPCALGGVLNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVIL  345 (424)
Q Consensus       277 v~~~~~~~~i~~~~ll--~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~vi  345 (424)
                           +.+.++.+++-  -.++|++|-|.-...|+++-...+ +-.+|++-|..|- |.-  +.-+++||.++
T Consensus       195 -----G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~  260 (296)
T PRK08306        195 -----GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL  260 (296)
T ss_pred             -----CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence                 12222212211  137899998864445665544333 2235666665552 211  23456676654

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.27  E-value=0.00064  Score=76.67  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=97.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHC--------C--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEH--------G--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM  286 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i  286 (424)
                      +.+..+++|.|||+||+.++++|.++        |  .+|++|+|+++.+++++|+|...+.+......  ..++ ...+
T Consensus       455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~--~~~~-~~~~  531 (810)
T PRK09466        455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA--VEWD-EESL  531 (810)
T ss_pred             cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc--CCcc-HHHH
Confidence            34567899999999999999998643        3  68899999999999999999887766544321  1111 0000


Q ss_pred             cCCccc--ccccceeeeccccCcccccccccccceEEEecCCCCC-C------HHHHHHHHhCCceEeccccccccCcch
Q 014463          287 DLNDLL--VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-D------PEADEILSKKGVVILPDIYANSGGVTV  357 (424)
Q Consensus       287 ~~~~ll--~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t------~eA~~iL~~rGI~viPD~laNaGGVi~  357 (424)
                       .+.+.  ..+.+|+|.|.-+..+...-..-+++..=|=-||-.. +      ++-.+..+++|+.+...-...+|=-+.
T Consensus       532 -~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii  610 (810)
T PRK09466        532 -FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN  610 (810)
T ss_pred             -HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH
Confidence             01111  2234689988754433222222344444444566631 1      122344567888777554333222221


Q ss_pred             hhHHHhhh-------cccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          358 SYFEWVQN-------IQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       358 s~~E~~qn-------~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      .-+.-+.+       +++. .=+-.-+.+++++  ...|.+++..|++.|.
T Consensus       611 ~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy  659 (810)
T PRK09466        611 HTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL  659 (810)
T ss_pred             HHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence            11111110       0000 0011223343333  4577888888888775

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.26  E-value=0.0008  Score=70.60  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=65.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK  275 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g  275 (424)
                      ...||.|++.+++.+.   +..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+.          ....+....  
T Consensus       191 ~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~--  254 (425)
T PRK05476        191 RYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD--  254 (425)
T ss_pred             cHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc--
Confidence            3568888877765442   556899999999999999999999999999987 777642          122111111  


Q ss_pred             CcccCCCCeeecCCcccccccceeeeccc-cCcccccccccc
Q 014463          276 SLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV  316 (424)
Q Consensus       276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i  316 (424)
                            +.+.++.++++. .+||+|+|.- .+.|+.+....+
T Consensus       255 ------G~~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~m  289 (425)
T PRK05476        255 ------GFRVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAM  289 (425)
T ss_pred             ------CCEecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcC
Confidence                  112222234443 7999999963 346766555554

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.14  E-value=0.011  Score=61.15  Aligned_cols=131  Identities=22%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      +.+-=++..+-.+.+..|.+++|+||.|+|+|++|+.+|+.|...|.+|++ .|....   +.              +. 
T Consensus        94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp~~~---~~--------------~~-  154 (378)
T PRK15438         94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDPPRA---DR--------------GD-  154 (378)
T ss_pred             HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCccc---cc--------------cc-
Confidence            444444455555566678889999999999999999999999999999984 453210   00              00 


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc---------cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-E
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL---------GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-I  344 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~---------~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-v  344 (424)
                          .....+-++++ .+|||++-+.-         .+-|+++....++ -.+++..+=+++ +.+|- +.|++.-+. .
T Consensus       155 ----~~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga  229 (378)
T PRK15438        155 ----EGDFRSLDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSV  229 (378)
T ss_pred             ----ccccCCHHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEE
Confidence                00112334555 35888884432         2346666666664 458888888885 55554 567666553 4


Q ss_pred             eccccccc
Q 014463          345 LPDIYANS  352 (424)
Q Consensus       345 iPD~laNa  352 (424)
                      +=|..-+=
T Consensus       230 ~LDV~e~E  237 (378)
T PRK15438        230 VLDVWEGE  237 (378)
T ss_pred             EEecCCCC
Confidence            45554443

>PRK13529 malate dehydrogenase; Provisional

Probab=97.10  E-value=0.018  Score=62.10  Aligned_cols=183  Identities=17%  Similarity=0.236  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463          112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG  191 (424)
Q Consensus       112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG  191 (424)
                      ++..|-..|...|++++.... |..-|--.|++...  ---|.+.|+...   | ++. +                    
T Consensus       218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~i---~-~Fn-D--------------------  269 (563)
T PRK13529        218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDEI---C-TFN-D--------------------  269 (563)
T ss_pred             CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccCC---C-eec-c--------------------
Confidence            355677888999999998877 55456677887642  234556665311   1 111 1                    


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCCC
Q 014463          192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPN  260 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~~  260 (424)
                         .-.-||-=+..++..+++..|.++++.||++.|.|..|-.+|++|.+    .|.       ++. +.|++|-+++..
T Consensus       270 ---DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r  345 (563)
T PRK13529        270 ---DIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDM  345 (563)
T ss_pred             ---ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCC
Confidence               11467877788888899988999999999999999999999999875    686       555 899999999766


Q ss_pred             CCCHHHHHH-HHHhcCCcccCCCCe-eecCCc-ccccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463          261 GIDVPALLK-YKKSNKSLNDFQGGN-AMDLND-LLVHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH  327 (424)
Q Consensus       261 GlDi~~L~~-~~~~~g~v~~~~~~~-~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~  327 (424)
                      + |+..-.. +.+....+..++... ..+-.+ +-.++.||||=++. ++.+|++-++...    =.||---+|-
T Consensus       346 ~-~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP  419 (563)
T PRK13529        346 P-DLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP  419 (563)
T ss_pred             C-cchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence            4 3322222 222211222121100 011122 33567899998886 7999999887753    3688888874

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.04  E-value=0.0022  Score=58.26  Aligned_cols=110  Identities=27%  Similarity=0.318  Sum_probs=67.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|.++|+|++|+.+|+.|.++|..|. +.|.+          .+++.+..+..        .+..++-+=+...||+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~~----------~~~~~~~~~~g--------~~~~~s~~e~~~~~dvvi   62 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDRS----------PEKAEALAEAG--------AEVADSPAEAAEQADVVI   62 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEE-EEESS----------HHHHHHHHHTT--------EEEESSHHHHHHHBSEEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEE-eeccc----------hhhhhhhHHhh--------hhhhhhhhhHhhcccceE
Confidence            589999999999999999999999987 55642          45555555442        233322222345679988


Q ss_pred             eccccCc-----ccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccc
Q 014463          301 PCALGGV-----LNKEN-AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       301 PaA~~~~-----It~~n-a~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~l  349 (424)
                      -|-....     +..++ +..+ +-++|++..+..  .+.+..+.+.++|+.++=--+
T Consensus        63 ~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV  120 (163)
T PF03446_consen   63 LCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV  120 (163)
T ss_dssp             E-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             eecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence            8754432     22222 2222 567888888764  355667789999998874433

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.03  E-value=0.0065  Score=58.49  Aligned_cols=136  Identities=24%  Similarity=0.288  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE--EEEEEcCCCceeCCCCCCHHHH-HHHHHhcC
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK--VVAVSDITGAIKNPNGIDVPAL-LKYKKSNK  275 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~i~~~~GlDi~~L-~~~~~~~g  275 (424)
                      |+-=+..++..+++..|.+++++||.|.|.|.+|..+++.|.+.|.+  -+-+.|++|-++....-++..- .++.+..+
T Consensus         4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~   83 (226)
T cd05311           4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN   83 (226)
T ss_pred             hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc
Confidence            44444455566677778889999999999999999999999999987  5669999987765443111111 22222211


Q ss_pred             CcccCCCCeeecCCcccccccceeeeccccCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCc
Q 014463          276 SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGV  342 (424)
Q Consensus       276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI  342 (424)
                      . ..   . ..+-.+.+. ++|++|=|.-.+.++++-++.+ +-.+|..-. +|+ |+-. +..++.|.
T Consensus        84 ~-~~---~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~-~~A~~~ga  144 (226)
T cd05311          84 P-EK---T-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWP-EEAKEAGA  144 (226)
T ss_pred             c-Cc---c-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCH-HHHHHcCC
Confidence            0 00   0 011112232 5899999988888887766655 334677666 564 3322 23344566

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12861 malic enzyme; Reviewed

Probab=96.98  E-value=0.014  Score=65.30  Aligned_cols=124  Identities=27%  Similarity=0.320  Sum_probs=90.8

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK  271 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~  271 (424)
                      .-||-=+..++..+++..|++++..||++.|.|..|..++++|.+.|.   +|+ ++|++|.++...  .++..+. .+.
T Consensus       166 qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a  243 (764)
T PRK12861        166 HGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFA  243 (764)
T ss_pred             chHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHH
Confidence            357777778888889988999999999999999999999999999998   566 999999999754  2443222 122


Q ss_pred             HhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCCC--CCHH
Q 014463          272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHP--TDPE  332 (424)
Q Consensus       272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p--~t~e  332 (424)
                      +.+    +     ..+-.|.+.. +||||=+..++.+|++-++.... .+|---||--  +|||
T Consensus       244 ~~~----~-----~~~L~eai~~-advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe  297 (764)
T PRK12861        244 QET----D-----ARTLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE  297 (764)
T ss_pred             hhc----C-----CCCHHHHHhc-CCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence            221    1     0122334443 69999998899999998887633 5777778742  3554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.96  E-value=0.0058  Score=63.49  Aligned_cols=124  Identities=24%  Similarity=0.311  Sum_probs=90.3

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE---EEEEEcCCCceeCCC-CCCH-HHHHHHH
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK---VVAVSDITGAIKNPN-GIDV-PALLKYK  271 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak---VVaVsD~~G~i~~~~-GlDi-~~L~~~~  271 (424)
                      .-||-=+..++-.+|+..|++++..+|++.|.|..|-.++++|...|.+   |+ ++|++|-+|+.- -++. +...++.
T Consensus       176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~G~l~~~r~~~~~~~~k~~~a  254 (432)
T COG0281         176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRKGLLYDGREDLTMNQKKYAKA  254 (432)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecCCcccCCCcccccchHHHHHH
Confidence            3688778888888999999999999999999999999999999999984   55 899999999632 2211 1112222


Q ss_pred             -HhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCCCCCHHH
Q 014463          272 -KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHPTDPEA  333 (424)
Q Consensus       272 -~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~t~eA  333 (424)
                       +.++...        +  +.--..+||||=|...+.+|++-++.... .+|---|| |+ ||+
T Consensus       255 ~~~~~~~~--------~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi  306 (432)
T COG0281         255 IEDTGERT--------L--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI  306 (432)
T ss_pred             Hhhhcccc--------c--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence             1211111        1  22456899999999999999998887643 57777777 44 444

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.94  E-value=0.0083  Score=59.90  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=69.7

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..|++..    +++++.+++|++|+|.|.|+ ||..++.+|.++|++|+ +++++.          ..|.+     
T Consensus       138 ~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~-----  197 (286)
T PRK14175        138 VPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS-----  197 (286)
T ss_pred             CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH-----
Confidence            47899888766    45678899999999999988 99999999999999988 777642          01111     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCCCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHP  328 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p  328 (424)
                                       ...++||+|-|.. .+.|+++..+.  -.+|++.+.++
T Consensus       198 -----------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~  233 (286)
T PRK14175        198 -----------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP  233 (286)
T ss_pred             -----------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence                             2347888888875 44677766543  35777777665

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.93  E-value=0.023  Score=61.60  Aligned_cols=178  Identities=17%  Similarity=0.222  Sum_probs=121.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463          112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG  191 (424)
Q Consensus       112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG  191 (424)
                      .+..|-..+...|++++..-.||..-|--.|++...  ---+.+.|...  + | ++. +                    
T Consensus       243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~~--i-~-~Fn-D--------------------  295 (581)
T PLN03129        243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRTT--H-L-CFN-D--------------------  295 (581)
T ss_pred             CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhccC--C-C-Eec-c--------------------
Confidence            355667788999999999988886556678887653  22345666421  0 1 111 1                    


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-----CCC-------EEEEEEcCCCceeCC
Q 014463          192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-----HGG-------KVVAVSDITGAIKNP  259 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga-------kVVaVsD~~G~i~~~  259 (424)
                         .-..||--+..++..+++..|.+++..||++.|.|..|-.+|++|.+     .|.       ++. +.|++|-+++.
T Consensus       296 ---DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~GLi~~~  371 (581)
T PLN03129        296 ---DIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSKGLVTKS  371 (581)
T ss_pred             ---ccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCCCeEeCC
Confidence               11467877788888889988999999999999999999999999876     475       554 89999999976


Q ss_pred             CCCCHHHHHHHHHhcCCcccCCCCeeecCCc-ccccccceeeeccc-cCcccccccccc----cceEEEecCCC
Q 014463          260 NGIDVPALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAANH  327 (424)
Q Consensus       260 ~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~  327 (424)
                      ..-++..-...+.+..  .     ...+-.| +-.++.||||=++. ++.+|++-++..    +=.||---+|-
T Consensus       372 r~~~l~~~k~~fa~~~--~-----~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP  438 (581)
T PLN03129        372 RKDSLQPFKKPFAHDH--E-----PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP  438 (581)
T ss_pred             CCccChHHHHHHHhhc--c-----cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            5321222222222211  0     0111123 33568999998884 799999988776    45688888884

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.91  E-value=0.0031  Score=66.00  Aligned_cols=104  Identities=16%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .||.+++   ..+++..+..+.|++|+|+|+|.+|..+++.+...|++|+ |+|.+          ...+...+ +.   
T Consensus       183 g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d----------~~R~~~A~-~~---  244 (413)
T cd00401         183 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD----------PICALQAA-ME---  244 (413)
T ss_pred             hhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC----------hhhHHHHH-hc---
Confidence            4666654   4455666788999999999999999999999999999987 57763          22222222 11   


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc-cCcccccccccc--cceEEEec
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV--KAKFIIEA  324 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i--~akiIvEg  324 (424)
                          +...++.++.+ ..+||+|.|.. ...|+..-.+.+  .+.+|.=|
T Consensus       245 ----G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         245 ----GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             ----CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence                22222223433 36899999974 345665434333  44554333

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.89  E-value=0.016  Score=53.49  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=67.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463          194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK  272 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~  272 (424)
                      ...++|++.++..    ++....+++|++|.|.|.|. +|..++++|.++|++|+ +++++-          +++.+   
T Consensus        22 ~~~p~~~~a~v~l----~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~---   83 (168)
T cd01080          22 GFIPCTPAGILEL----LKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKE---   83 (168)
T ss_pred             CccCChHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHH---
Confidence            3456787776664    44445679999999999998 58889999999999865 777641          11111   


Q ss_pred             hcCCcccCCCCeeecCCcccccccceeeecccc-CcccccccccccceEEEecCCCC
Q 014463          273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCALG-GVLNKENAADVKAKFIIEAANHP  328 (424)
Q Consensus       273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p  328 (424)
                                         .-.++||+|-|... +.|+.+..+.  ..+|++-|..+
T Consensus        84 -------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr  119 (168)
T cd01080          84 -------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR  119 (168)
T ss_pred             -------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence                               12368888888753 5677776543  47888888654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.85  E-value=0.0033  Score=55.47  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=69.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--c
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V  293 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~  293 (424)
                      .+++++++.|.|.|.+|+.++..|.+.|++-|.|++.+          .+++.++.++.+.    .....++-+++.  -
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~   73 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL   73 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence            37899999999999999999999999999866688874          4555555554310    011223334443  3


Q ss_pred             cccceeeecccc--Ccccccccccccc--eEEEecCCCC-CCHH
Q 014463          294 HECDVLVPCALG--GVLNKENAADVKA--KFIIEAANHP-TDPE  332 (424)
Q Consensus       294 ~~~DIliPaA~~--~~It~~na~~i~a--kiIvEgAN~p-~t~e  332 (424)
                      .++||+|-|.-.  ..|+++.......  ++|++-|+-+ ++|+
T Consensus        74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~  117 (135)
T PF01488_consen   74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE  117 (135)
T ss_dssp             HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred             hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence            579999988643  3778887777653  6999999743 4554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.81  E-value=0.0065  Score=56.04  Aligned_cols=116  Identities=21%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV  293 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~  293 (424)
                      .+.++.|+||.|.|+|++|+.+|+.|...|++|++ .|.+..          .-......        +....+-++++.
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~~----------~~~~~~~~--------~~~~~~l~ell~   90 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG-YDRSPK----------PEEGADEF--------GVEYVSLDELLA   90 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE-EESSCH----------HHHHHHHT--------TEEESSHHHHHH
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEE-ecccCC----------hhhhcccc--------cceeeehhhhcc
Confidence            35679999999999999999999999999999994 454321          00001110        112223345553


Q ss_pred             cccceeeeccc-----cCcccccccccccc-eEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~a-kiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                       .||+++-+.-     .+.|+++....++- -+++.-|-+.+ +.+|- +.|++.-|. ..=|+.
T Consensus        91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~  154 (178)
T PF02826_consen   91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF  154 (178)
T ss_dssp             -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred             -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence             6899987764     35566666666653 48888888885 55443 566665554 344433

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.75  E-value=0.016  Score=58.87  Aligned_cols=155  Identities=16%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+.     .   ..  .  ....       +....+.++++ .
T Consensus       145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~-----~---~~--~--~~~~-------~~~~~~l~ell-~  203 (333)
T PRK13243        145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR-----K---PE--A--EKEL-------GAEYRPLEELL-R  203 (333)
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-----C---hh--h--HHHc-------CCEecCHHHHH-h
Confidence            346899999999999999999999999999987 456532     1   00  0  0111       11222334554 4


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-EeccccccccCcchhhHHHhhh
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIYANSGGVTVSYFEWVQN  365 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn  365 (424)
                      +||+++-|.-     .+.|+++....++ -.+++.-+=+++ +.+|- +.|++.-|. ..=|+..+=-=. -+.+.-+.|
T Consensus       204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~n  282 (333)
T PRK13243        204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN  282 (333)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCC
Confidence            7999998874     3446655555553 357788888874 44443 567766553 223433222111 122211122


Q ss_pred             ---ccccCCCHHHHHHHHHHHHHHHHHHH
Q 014463          366 ---IQGFMWEEEKVNHELKRYMMSAFKDI  391 (424)
Q Consensus       366 ---~~~~~w~~e~v~~~l~~~m~~~~~~v  391 (424)
                         ..|..|..++...++.+.+.+.+.+.
T Consensus       283 vilTPHia~~t~e~~~~~~~~~~~ni~~~  311 (333)
T PRK13243        283 VVLAPHIGSATFEAREGMAELVAENLIAF  311 (333)
T ss_pred             EEECCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence               13555655555665555545544443

>PLN02494 adenosylhomocysteinase

Probab=96.71  E-value=0.0078  Score=63.87  Aligned_cols=98  Identities=19%  Similarity=0.335  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      -||.+++   +.+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |+|.+.          .........    
T Consensus       235 GtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~dp----------~r~~eA~~~----  296 (477)
T PLN02494        235 GCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEIDP----------ICALQALME----  296 (477)
T ss_pred             cccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhhHHHHhc----
Confidence            3555553   4445556777899999999999999999999999999987 566532          111111111    


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc-cCcccccccccccc
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKA  318 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~a  318 (424)
                       +|   ..++.++++ ..+||+|-|.- .+.|+.+....++.
T Consensus       297 -G~---~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~  333 (477)
T PLN02494        297 -GY---QVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKMKN  333 (477)
T ss_pred             -CC---eeccHHHHH-hhCCEEEECCCCccchHHHHHhcCCC
Confidence             11   112223433 36899998754 34567776666644

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.61  E-value=0.041  Score=55.47  Aligned_cols=111  Identities=22%  Similarity=0.343  Sum_probs=72.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|+||.|.|||++|+.+|+++...|++|++ .|..+.-. ..                  .+   ...+-++++ ..
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~~~-~~------------------~~---~~~~l~ell-~~  196 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGKNK-NE------------------EY---ERVSLEELL-KT  196 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcccc-cc------------------Cc---eeecHHHHh-hc
Confidence            358999999999999999999999999999985 45432100 00                  11   122334555 36


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCceEeccccc
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVVILPDIYA  350 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~viPD~la  350 (424)
                      ||+++-+.-     .+.|+++...+++ --+++.-|=+++ ..+|- +.|++.-|...=|++.
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~  259 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE  259 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence            888887763     3356666666664 357788888885 54443 6777766654445543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.56  E-value=0.077  Score=53.60  Aligned_cols=108  Identities=19%  Similarity=0.313  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ++.|+||.|.|+|++|+.+|+++...|++|++. |...    +...+              ..     ..+-++++ ..|
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~~~~--------------~~-----~~~l~ell-~~s  198 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----ASVCR--------------EG-----YTPFEEVL-KQA  198 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----ccccc--------------cc-----cCCHHHHH-HhC
Confidence            589999999999999999999999999999864 3321    00000              00     11224444 368


Q ss_pred             ceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          297 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       297 DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                      |+++-+.-     .+-|+.+...+++ --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus       199 Div~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~  260 (314)
T PRK06932        199 DIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL  260 (314)
T ss_pred             CEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence            88887763     3446666666554 357788888885 55543 577766664 334443

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.55  E-value=0.018  Score=57.18  Aligned_cols=123  Identities=19%  Similarity=0.273  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEEcCCCceeCCCC-CCHHH
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDITGAIKNPNG-IDVPA  266 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~i~~~~G-lDi~~  266 (424)
                      -||-=+..++..+++..|.++++.||+|.|.|..|..++++|.+.    |.      +=+-+.|++|-+++... ++ +.
T Consensus         3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~-~~   81 (279)
T cd05312           3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLT-PF   81 (279)
T ss_pred             hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcch-HH
Confidence            366667777888888889999999999999999999999999765    86      33348999999997553 32 11


Q ss_pred             HHHHHHhcCCcccCCCCeeecCCccc-ccccceeeecc-ccCcccccccccc----cceEEEecCCC
Q 014463          267 LLKYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCA-LGGVLNKENAADV----KAKFIIEAANH  327 (424)
Q Consensus       267 L~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA-~~~~It~~na~~i----~akiIvEgAN~  327 (424)
                      ...+.+....      ....+-.|.+ .+++||||=+. .++.+|++-++..    +=.+|---+|-
T Consensus        82 ~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  142 (279)
T cd05312          82 KKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP  142 (279)
T ss_pred             HHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence            2222222111      0111122333 46999999888 4799999988776    34688888884

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.54  E-value=0.032  Score=56.67  Aligned_cols=37  Identities=30%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |..+.|+||.|+|||++|+.+|+.|...|.+|++ .|.
T Consensus       137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~  173 (324)
T COG0111         137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDP  173 (324)
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECC
Confidence            4468899999999999999999999999999995 444

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.51  E-value=0.05  Score=55.68  Aligned_cols=130  Identities=22%  Similarity=0.335  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHC-CC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH-GG-KVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .|.+-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.++ |. +++ +.+.+          .+.+.+...+-
T Consensus       133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~el  201 (340)
T PRK14982        133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAEL  201 (340)
T ss_pred             hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHHh
Confidence            3666666678888888898999999999998 89999999999754 64 665 55543          22333332221


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc--cC-cccccccccccceEEEecCCCC-CCHHHHHHHHhCCceEeccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL--GG-VLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYA  350 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~--~~-~It~~na~~i~akiIvEgAN~p-~t~eA~~iL~~rGI~viPD~la  350 (424)
                            ..+...+-++.+ .++|+++=|+-  .. .|+.+..+  +-.+|++.|.-. +.|+..    +      ||+..
T Consensus       202 ------~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~----~------~~V~v  262 (340)
T PRK14982        202 ------GGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ----G------PGIHV  262 (340)
T ss_pred             ------ccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC----C------CCEEE
Confidence                  111111112333 36899887774  34 26766553  557999999754 555431    1      55555


Q ss_pred             cccCcch
Q 014463          351 NSGGVTV  357 (424)
Q Consensus       351 NaGGVi~  357 (424)
                      =-||++.
T Consensus       263 ~~gG~V~  269 (340)
T PRK14982        263 LKGGIVE  269 (340)
T ss_pred             EeCCccc
Confidence            5566654

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.48  E-value=0.018  Score=64.46  Aligned_cols=119  Identities=24%  Similarity=0.306  Sum_probs=88.6

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK  271 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~  271 (424)
                      ..||-=+..++..+++..|.+++..||+|.|.|..|-.++++|...|.   +|+ ++|++|.++...  +++..+. .+.
T Consensus       162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~-~~a  239 (752)
T PRK07232        162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA-AYA  239 (752)
T ss_pred             chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH-HHh
Confidence            468888888888899989999999999999999999999999999998   565 999999999754  3443222 111


Q ss_pred             HhcCCcccCCCCeeecCCcccccccceeeeccccCccccccccccc-ceEEEecCCC
Q 014463          272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANH  327 (424)
Q Consensus       272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~  327 (424)
                      +.+    +     .-+-.|.+.. +||||=++.++.+|++-++... -.+|---||-
T Consensus       240 ~~~----~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP  286 (752)
T PRK07232        240 VDT----D-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANP  286 (752)
T ss_pred             ccC----C-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCC
Confidence            110    0     0122344444 8999998889999999887763 3577777774

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.46  E-value=0.12  Score=54.27  Aligned_cols=101  Identities=18%  Similarity=0.269  Sum_probs=66.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc--
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV--  293 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~--  293 (424)
                      .++++++|.|.|.|.+|+.+++.|.+.|++-+.|+..+          .+...++.++.+.      ...++-+++.+  
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~~------~~~~~~~~l~~~l  240 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFRN------ASAHYLSELPQLI  240 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhcC------CeEecHHHHHHHh
Confidence            35889999999999999999999999998666688875          2333344333211      12222233322  


Q ss_pred             cccceeeeccc--cCcccccccccccceEEEecCCCC-CCHHH
Q 014463          294 HECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHP-TDPEA  333 (424)
Q Consensus       294 ~~~DIliPaA~--~~~It~~na~~i~akiIvEgAN~p-~t~eA  333 (424)
                      .++||+|-|..  ..+|+.+.... +-.++++-|+.. +.|+.
T Consensus       241 ~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~v  282 (414)
T PRK13940        241 KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPKL  282 (414)
T ss_pred             ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCccc
Confidence            47999999875  34567555432 345888888754 45543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.43  E-value=0.0058  Score=49.96  Aligned_cols=86  Identities=27%  Similarity=0.265  Sum_probs=55.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCC---CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee--cCCccccccc
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM--DLNDLLVHEC  296 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i--~~~~ll~~~~  296 (424)
                      ||+|+|+||+|..+++-|.+.|   .+|.-+++.+          .+.+.+++++.+       ....  ++.++.+ ++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~-------~~~~~~~~~~~~~-~a   62 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYG-------VQATADDNEEAAQ-EA   62 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCT-------TEEESEEHHHHHH-HT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhc-------cccccCChHHhhc-cC
Confidence            6899999999999999999999   8887565663          566666666543       1211  3455555 89


Q ss_pred             ceeeeccccCcccccccc----cccceEEEecCC
Q 014463          297 DVLVPCALGGVLNKENAA----DVKAKFIIEAAN  326 (424)
Q Consensus       297 DIliPaA~~~~It~~na~----~i~akiIvEgAN  326 (424)
                      |++|.|--...+.+ -+.    ..+-++|+.-+|
T Consensus        63 dvvilav~p~~~~~-v~~~i~~~~~~~~vis~~a   95 (96)
T PF03807_consen   63 DVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAA   95 (96)
T ss_dssp             SEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred             CEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence            99999965554422 111    224556665554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.41  E-value=0.037  Score=56.54  Aligned_cols=101  Identities=10%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC
Q 014463          204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG  283 (424)
Q Consensus       204 ~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~  283 (424)
                      .+++..+++.+ .++++++|.|+|.|.+|+-+++.|.++|++-|.|+..+-..     ++.+.+             + .
T Consensus       159 ~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------~-~  218 (338)
T PRK00676        159 ESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------V-R  218 (338)
T ss_pred             HHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh-------------h-h
Confidence            33344444555 45999999999999999999999999997656688876411     111100             0 0


Q ss_pred             eeecCCcccccccceeeec-----cccCcccccccccccceEEEecCCCC
Q 014463          284 NAMDLNDLLVHECDVLVPC-----ALGGVLNKENAADVKAKFIIEAANHP  328 (424)
Q Consensus       284 ~~i~~~~ll~~~~DIliPa-----A~~~~It~~na~~i~akiIvEgAN~p  328 (424)
                      +.+   + +..++||+|-|     +....|+.+.......|++++-|+..
T Consensus       219 ~~~---~-~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR  264 (338)
T PRK00676        219 EEL---S-FQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR  264 (338)
T ss_pred             hhh---h-cccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence            000   1 23578999965     45667887777666668999999854

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.40  E-value=0.0099  Score=62.13  Aligned_cols=96  Identities=18%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .||.+++.+   +++..+..+.|++|+|.|+|++|+.+|+.+...|++|+ |.|.+          .....+... .   
T Consensus       176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~-~---  237 (406)
T TIGR00936       176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAM-D---  237 (406)
T ss_pred             ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHh-c---
Confidence            466655543   44445667899999999999999999999999999987 56653          112211111 1   


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc-cCcccccccccc
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV  316 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i  316 (424)
                          +....+.++.+ ..+||+|.|.- .+.|+.+....+
T Consensus       238 ----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~m  272 (406)
T TIGR00936       238 ----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENM  272 (406)
T ss_pred             ----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcC
Confidence                12222233443 47899998753 345665444444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.35  E-value=0.056  Score=57.71  Aligned_cols=153  Identities=17%  Similarity=0.284  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      --+.|...+++    +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+          .+++.+..++.+. 
T Consensus       314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~-  377 (477)
T PRK09310        314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQG-  377 (477)
T ss_pred             cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhcc-
Confidence            34677777764    45678899999999999999999999999999876 66653          2333333332110 


Q ss_pred             ccCCCCeeecCCccc-ccccceeeeccccCcccccccccccceEEEecCCCCC-CHHHHHHHHhCCceEeccccccccCc
Q 014463          278 NDFQGGNAMDLNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGV  355 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNaGGV  355 (424)
                            ..++.+++- -.++|++|-|.-.+..-+..   +. ++|++-.-+|. |+ --+..+++|+.++..        
T Consensus       378 ------~~~~~~~~~~l~~~DiVInatP~g~~~~~~---l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G--------  438 (477)
T PRK09310        378 ------KAFPLESLPELHRIDIIINCLPPSVTIPKA---FP-PCVVDINTLPKHSP-YTQYARSQGSSIIYG--------  438 (477)
T ss_pred             ------ceechhHhcccCCCCEEEEcCCCCCcchhH---Hh-hhEEeccCCCCCCH-HHHHHHHCcCEEECc--------
Confidence                  011111111 13789999886433211111   22 48888888774 65 446677888775443        


Q ss_pred             chhhHHHhh--h-ccccCCCHHHHHHHHHHHHHHHHH
Q 014463          356 TVSYFEWVQ--N-IQGFMWEEEKVNHELKRYMMSAFK  389 (424)
Q Consensus       356 i~s~~E~~q--n-~~~~~w~~e~v~~~l~~~m~~~~~  389 (424)
                          +|++-  . .+-..|+..++.++|+...++.+.
T Consensus       439 ----~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~  471 (477)
T PRK09310        439 ----YEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVA  471 (477)
T ss_pred             ----HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence                23331  1 122347766677777766554443

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.33  E-value=0.0015  Score=55.84  Aligned_cols=89  Identities=27%  Similarity=0.378  Sum_probs=51.9

Q ss_pred             ecChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCcccc-cccceee
Q 014463          227 GFGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLV-HECDVLV  300 (424)
Q Consensus       227 GfGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~-~~~DIli  300 (424)
                      |||+||+.+++.|.+.    +.+|++|+|++ .+.+++      .....         ++... .+.+++++ .++||+|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~dvvV   64 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASF---------PDEAFTTDLEELIDDPDIDVVV   64 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHH---------THSCEESSHHHHHTHTT-SEEE
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhc---------ccccccCCHHHHhcCcCCCEEE
Confidence            8999999999999875    68999999999 776655      11111         11111 12245554 5788888


Q ss_pred             eccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcc
Q 014463          301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVT  356 (424)
Q Consensus       301 PaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi  356 (424)
                      .|+-...+                      .+.-.-.-++|+.|+   .+|.|...
T Consensus        65 E~t~~~~~----------------------~~~~~~~L~~G~~VV---t~nk~ala   95 (117)
T PF03447_consen   65 ECTSSEAV----------------------AEYYEKALERGKHVV---TANKGALA   95 (117)
T ss_dssp             E-SSCHHH----------------------HHHHHHHHHTTCEEE---ES-HHHHH
T ss_pred             ECCCchHH----------------------HHHHHHHHHCCCeEE---EECHHHhh
Confidence            88433211                      122233456888875   58888775

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.29  E-value=0.021  Score=56.05  Aligned_cols=121  Identities=18%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-----------EEEEEEcCCCceeCCCC-CCHH
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-----------KVVAVSDITGAIKNPNG-IDVP  265 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-----------kVVaVsD~~G~i~~~~G-lDi~  265 (424)
                      -||-=+..++..+++..|.++++.||+|.|.|..|-.++++|.+.+.           ++. +.|++|-+++... ++..
T Consensus         3 GTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~Gll~~~r~~l~~~   81 (254)
T cd00762           3 GTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRKGLLVKNRKETCPN   81 (254)
T ss_pred             hhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCCCeEeCCCCccCHH
Confidence            36666677778888888999999999999999999999999987654           455 8999999997553 4332


Q ss_pred             HHH--HHHHhcCCcccCCCCeeecCCccc-ccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463          266 ALL--KYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH  327 (424)
Q Consensus       266 ~L~--~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~  327 (424)
                      ...  ++.+.        .....+-.|.+ ..+.||||=++. ++.+|++-++...    =.+|---+|-
T Consensus        82 ~~~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  143 (254)
T cd00762          82 EYHLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP  143 (254)
T ss_pred             HHHHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence            111  11111        00111112333 469999998776 9999999887753    4688888884

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PLN02928 oxidoreductase family protein

Probab=96.29  E-value=0.054  Score=55.47  Aligned_cols=124  Identities=22%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC--CCeeecCCcccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ--GGNAMDLNDLLV  293 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~--~~~~i~~~~ll~  293 (424)
                      .++.|+|+.|.|+|++|+.+|+.|...|++|++ .|.+..   ++   ......+.  ...+..+.  .....+-++++ 
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~~---~~~~~~~~--~~~~~~~~~~~~~~~~L~ell-  224 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---SE---PEDGLLIP--NGDVDDLVDEKGGHEDIYEFA-  224 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---hh---hhhhhccc--cccccccccccCcccCHHHHH-
Confidence            469999999999999999999999999999984 454321   00   00000000  00000100  01111223444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                      .+|||++-|.-     .+.|+++....++ -.+++.-|=+++ ..+|- +.|.+.-|. ..=|..
T Consensus       225 ~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~  289 (347)
T PLN02928        225 GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA  289 (347)
T ss_pred             hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence            36899998863     4456666666664 358888888885 55544 566665553 344554

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.29  E-value=0.21  Score=52.38  Aligned_cols=99  Identities=25%  Similarity=0.409  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--c
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V  293 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~  293 (424)
                      ++.+++|+|.|.|.+|+.+++.|...| .+|+ |.+.+          .+...+..++.+.       ..++.+++.  -
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs----------~~ra~~la~~~g~-------~~i~~~~l~~~l  238 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT----------YERAEDLAKELGG-------EAVKFEDLEEYL  238 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcCC-------eEeeHHHHHHHH
Confidence            478999999999999999999999999 4555 77764          2333333333221       112212221  1


Q ss_pred             cccceeeeccc--cCcccccccccc-----cceEEEecCCCC-CCHHH
Q 014463          294 HECDVLVPCAL--GGVLNKENAADV-----KAKFIIEAANHP-TDPEA  333 (424)
Q Consensus       294 ~~~DIliPaA~--~~~It~~na~~i-----~akiIvEgAN~p-~t~eA  333 (424)
                      .++||+|-|..  ...|+.+.+...     +..+|+.-|+.. ++|+.
T Consensus       239 ~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v  286 (417)
T TIGR01035       239 AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV  286 (417)
T ss_pred             hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence            37999999963  445666655442     234889998533 56654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.28  E-value=0.14  Score=53.66  Aligned_cols=99  Identities=20%  Similarity=0.350  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--cc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VH  294 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~~  294 (424)
                      ++.+++|+|.|.|.+|+.+++.|...|++-|.|++.+          .+...++.++.+.       ..++.+++.  -.
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g~-------~~~~~~~~~~~l~  241 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFGG-------EAIPLDELPEALA  241 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcCC-------cEeeHHHHHHHhc
Confidence            5789999999999999999999999998444477764          2344434433221       111111211  13


Q ss_pred             ccceeeeccc--cCcccccccccc------cceEEEecCCCC-CCHH
Q 014463          295 ECDVLVPCAL--GGVLNKENAADV------KAKFIIEAANHP-TDPE  332 (424)
Q Consensus       295 ~~DIliPaA~--~~~It~~na~~i------~akiIvEgAN~p-~t~e  332 (424)
                      ++|++|-|..  ...|+.+.++..      +-.++++-|+-. +.|+
T Consensus       242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~  288 (423)
T PRK00045        242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE  288 (423)
T ss_pred             cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence            7899999964  345666655432      346889998643 4554

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.26  E-value=0.012  Score=62.58  Aligned_cols=172  Identities=15%  Similarity=0.148  Sum_probs=103.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh---cC-CcccCCCCeeecCCccccc--
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NK-SLNDFQGGNAMDLNDLLVH--  294 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~---~g-~v~~~~~~~~i~~~~ll~~--  294 (424)
                      .+|.|+|.|++|+++|+.|.++|.+|. +-|.+          .+...++.+.   .+ .+..+     -+.+++.+.  
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~~-----~s~~e~v~~l~   65 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKGY-----HTLEELVNSLK   65 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCcceec-----CCHHHHHhcCC
Confidence            379999999999999999999999976 65653          3443333322   12 11111     133455532  


Q ss_pred             ccceeeeccccCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------------cccccCc
Q 014463          295 ECDVLVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------------YANSGGV  355 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~------------laNaGGV  355 (424)
                      ++|+++-|.......++.+    +.+ .-++|+++.|..  .|.+-.+.+.++||.++=--            ..-.||=
T Consensus        66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~  145 (470)
T PTZ00142         66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGN  145 (470)
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCC
Confidence            6898887765554443333    333 357999999985  35556678999999986211            1222332


Q ss_pred             chhhHHHhhhc----cc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 014463          356 TVSYFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL  409 (424)
Q Consensus       356 i~s~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~  409 (424)
                      - ..|+.++.+    ..       ..|        --.-|+.-++.-+.+.+.|.++.++ ..++++.+.+.++
T Consensus       146 ~-~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~  218 (470)
T PTZ00142        146 K-EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF  218 (470)
T ss_pred             H-HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence            1 123333221    10       111        0133566677777788888888887 6888887765543

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.24  E-value=0.12  Score=55.94  Aligned_cols=181  Identities=16%  Similarity=0.124  Sum_probs=119.5

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCC
Q 014463          113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGS  192 (424)
Q Consensus       113 s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs  192 (424)
                      +..|-..|...|++++.... |..-|--.|++...  ---+.+.|....   | ++ -+-                    
T Consensus       221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~i---~-~F-nDD--------------------  272 (559)
T PTZ00317        221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNKY---R-CF-NDD--------------------  272 (559)
T ss_pred             ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccCC---C-Ee-ccc--------------------
Confidence            56677889999999998887 55556678887642  234556775321   1 11 111                    


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH----HCCC-------EEEEEEcCCCceeCCCC
Q 014463          193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPNG  261 (424)
Q Consensus       193 ~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kVVaVsD~~G~i~~~~G  261 (424)
                         -.-||--+..++..+++..|.+++..||++.|.|..|-.+|++|.    +.|.       ++. +.|++|-+++..+
T Consensus       273 ---iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~  348 (559)
T PTZ00317        273 ---IQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRG  348 (559)
T ss_pred             ---chhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC
Confidence               146777778888888998899999999999999999999999887    3686       555 8899999997654


Q ss_pred             CCHHHHHHHHHhcCCcccCCCCeeecCCc-ccccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463          262 IDVPALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH  327 (424)
Q Consensus       262 lDi~~L~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~  327 (424)
                      =++..-...+.+...  .-++....+-.| +-.++.||||=++. ++.+|++-++...    =.||---+|-
T Consensus       349 ~~l~~~k~~fa~~~~--~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP  418 (559)
T PTZ00317        349 DKLAKHKVPFARTDI--SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP  418 (559)
T ss_pred             ccccHHHHHHhcccc--ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            112222221211100  000000011122 33567899998885 7899999887653    4688888874

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.23  E-value=0.025  Score=56.50  Aligned_cols=93  Identities=25%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+.|..|++..    +++++.+++|++++|.|-++ ||.-++.+|..+|+.|. +++++..       |   |.+     
T Consensus       144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~T~-------~---l~~-----  203 (287)
T PRK14176        144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVFTD-------D---LKK-----  203 (287)
T ss_pred             CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEeccCC-------C---HHH-----
Confidence            47899888766    55678999999999999988 99999999999999986 7776320       1   111     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeecc-ccCcccccccccccceEEEecCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCA-LGGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA-~~~~It~~na~~i~akiIvEgAN  326 (424)
                                       ....+||+|-|. ..+.|+.+.++. .+-+|=-|-|
T Consensus       204 -----------------~~~~ADIvv~AvG~p~~i~~~~vk~-gavVIDvGin  238 (287)
T PRK14176        204 -----------------YTLDADILVVATGVKHLIKADMVKE-GAVIFDVGIT  238 (287)
T ss_pred             -----------------HHhhCCEEEEccCCccccCHHHcCC-CcEEEEeccc
Confidence                             234788888765 366777665554 3333333444

>PRK07574 formate dehydrogenase; Provisional

Probab=96.22  E-value=0.048  Score=56.73  Aligned_cols=157  Identities=11%  Similarity=0.124  Sum_probs=88.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH  294 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~~  294 (424)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+.       .+.+ ..   +..       +.+. .+.++++ .
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr~~-------~~~~-~~---~~~-------g~~~~~~l~ell-~  247 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDRHR-------LPEE-VE---QEL-------GLTYHVSFDSLV-S  247 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCCC-------Cchh-hH---hhc-------CceecCCHHHHh-h
Confidence            348999999999999999999999999999984 45432       1211 10   010       1111 2334555 5


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCcchhhHHHhhh
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN  365 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn  365 (424)
                      .|||++-|.-     .+.|+++....++ -.+++.-|-+++ ..+| .+.|++.-|. ..=|+.-+=--..-+-+.-+.|
T Consensus       248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pN  327 (385)
T PRK07574        248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPR  327 (385)
T ss_pred             cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCC
Confidence            7999998864     3456655555553 358888888885 4433 3677776664 3344433211111111211223


Q ss_pred             c---cccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463          366 I---QGFMWEEEKVNHELKRYMMSAFKDIK  392 (424)
Q Consensus       366 ~---~~~~w~~e~v~~~l~~~m~~~~~~v~  392 (424)
                      .   .|..+.-.+...++.+...+.+.+.+
T Consensus       328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~  357 (385)
T PRK07574        328 NGMTPHISGTTLSAQARYAAGTREILECFF  357 (385)
T ss_pred             eEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence            1   34444445555555555455544443

>PRK12862 malic enzyme; Reviewed

Probab=96.21  E-value=0.03  Score=62.96  Aligned_cols=119  Identities=24%  Similarity=0.276  Sum_probs=89.6

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK  271 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~  271 (424)
                      .-||-=+..++..+++..|++++..||+|.|.|..|..++++|...|.   +|+ ++|++|.++...  +++..+. .+.
T Consensus       170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~-~~a  247 (763)
T PRK12862        170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA-RYA  247 (763)
T ss_pred             ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH-HHh
Confidence            467777788888899989999999999999999999999999999998   565 899999999754  3543322 122


Q ss_pred             HhcCCcccCCCCeeecCCcccccccceeeeccccCccccccccccc-ceEEEecCCC
Q 014463          272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANH  327 (424)
Q Consensus       272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~  327 (424)
                      +.+    +.     -+-.|.+.. +||||=++.++.+|++-++... =.+|---||-
T Consensus       248 ~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP  294 (763)
T PRK12862        248 QKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANP  294 (763)
T ss_pred             hhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCC
Confidence            221    10     122344544 8999998889999999888763 3577777874

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.20  E-value=0.054  Score=54.98  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=71.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~  293 (424)
                      |.+|.|+|+.|.|+|++|+.+|+.+. ..|.+|+ ..|...        +.+..    ..      + +.+..+-++++ 
T Consensus       140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~------~-~~~~~~l~ell-  198 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ER------F-NARYCDLDTLL-  198 (323)
T ss_pred             cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hh------c-CcEecCHHHHH-
Confidence            44689999999999999999999997 8999998 444321        00000    00      0 12223334554 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                      ..||+++-+.-     .+.|+.+.....+ --+++.-|-+++ ..+|- +.|++.-|. ..=|+.
T Consensus       199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf  263 (323)
T PRK15409        199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVF  263 (323)
T ss_pred             HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence            47898887763     3346666555553 358888888885 44443 567766664 334443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.19  E-value=0.02  Score=57.12  Aligned_cols=169  Identities=17%  Similarity=0.239  Sum_probs=96.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc--cccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV--HECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~--~~~DI  298 (424)
                      ++|.|+|+|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. + ...+.     +.+++.+  .++|+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~~-----s~~~~~~~~~~~dv   62 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGVA-----NLRELSQRLSAPRV   62 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-CcccC-----CHHHHHhhcCCCCE
Confidence            379999999999999999999999987 45653          3444444432 1 11111     1223322  35899


Q ss_pred             eeeccccCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccc------------cccCcchhh
Q 014463          299 LVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------------NSGGVTVSY  359 (424)
Q Consensus       299 liPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~la------------NaGGVi~s~  359 (424)
                      ++-|.-.. ..++.+    +.+ +-++|++..|..  .|.+..+.+.++|+.++---+.            ..||=- ..
T Consensus        63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~-~~  140 (298)
T TIGR00872        63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDG-EA  140 (298)
T ss_pred             EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCH-HH
Confidence            88775433 323222    223 236899999984  4666667899999987642221            222211 11


Q ss_pred             HHHhhh----cc----ccCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Q 014463          360 FEWVQN----IQ----GFMW--------EEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTL  409 (424)
Q Consensus       360 ~E~~qn----~~----~~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~  409 (424)
                      ++-++.    +.    +..+        .-+.++.-+.--+..++.+.++.+++.  ++++.+.+.++
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~  208 (298)
T TIGR00872       141 FARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW  208 (298)
T ss_pred             HHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            222221    11    0111        012344455555567788888888876  46877766553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN03139 formate dehydrogenase; Provisional

Probab=96.15  E-value=0.078  Score=55.18  Aligned_cols=108  Identities=23%  Similarity=0.323  Sum_probs=69.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH  294 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~  294 (424)
                      .++.|++|.|.|+|++|+.+|+.|...|++|++ .|.+.       .+.+..    ++.       +.... +-++++ .
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~~-------~~~~~~----~~~-------g~~~~~~l~ell-~  254 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRLK-------MDPELE----KET-------GAKFEEDLDAML-P  254 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCCC-------cchhhH----hhc-------CceecCCHHHHH-h
Confidence            359999999999999999999999999999974 55432       221111    111       11122 234555 4


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~  343 (424)
                      +||+++-|.-     .+.|+++....++ -.+++.-|=+++ ..+|- +.|++.-|.
T Consensus       255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~  311 (386)
T PLN03139        255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG  311 (386)
T ss_pred             hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence            6999998764     3345555444442 357888888875 44443 567766664

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.09  E-value=0.013  Score=60.86  Aligned_cols=54  Identities=22%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +.+-=++..+-.+.+..|..++|+||.|+|+|++|+.+|+.|...|.+|+ +.|.
T Consensus        94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp  147 (381)
T PRK00257         94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDP  147 (381)
T ss_pred             HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECC
Confidence            33333444445555667888999999999999999999999999999998 4464

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.03  E-value=0.022  Score=58.22  Aligned_cols=103  Identities=20%  Similarity=0.286  Sum_probs=72.7

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      .-||.+.+-++..+   .+.-+.||+++|-|||.||+..|..|.-.||+|+ |++.+-         +.+|.+..+    
T Consensus       189 YGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~Md----  251 (420)
T COG0499         189 YGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAMD----  251 (420)
T ss_pred             cccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhhc----
Confidence            45777766655543   3455899999999999999999999999999988 998752         455544332    


Q ss_pred             cccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEE
Q 014463          277 LNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFII  322 (424)
Q Consensus       277 v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIv  322 (424)
                           |-+.++-++.- ...||||-|.. .++|+.+-....+=..|+
T Consensus       252 -----Gf~V~~m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl  292 (420)
T COG0499         252 -----GFRVMTMEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAIL  292 (420)
T ss_pred             -----CcEEEEhHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence                 23344333322 35699999875 678888887777665555

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.01  E-value=0.18  Score=49.54  Aligned_cols=130  Identities=15%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      --+.|...+++.    .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+          .+++.++.++-.  
T Consensus        99 TD~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~--  161 (270)
T TIGR00507        99 TDGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQ--  161 (270)
T ss_pred             CCHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHh--
Confidence            346777777543    3445678899999999999999999999998766 66653          233333333211  


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCc---ccccc--cccc-cceEEEecCCCCC-CHHHHHHHHhCCceEec
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGV---LNKEN--AADV-KAKFIIEAANHPT-DPEADEILSKKGVVILP  346 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~---It~~n--a~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viP  346 (424)
                       .+......+.++....++||+|-|.-.+.   +.+..  ...+ .-++|++-.-.|. | .--+..+++|+.++.
T Consensus       162 -~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-~ll~~A~~~G~~~vd  235 (270)
T TIGR00507       162 -RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-PFLAEAKSLGTKTID  235 (270)
T ss_pred             -hcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-HHHHHHHHCCCeeeC
Confidence             11111122222322347999998875332   21111  1123 2348888887774 5 455677888887654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.99  E-value=0.025  Score=55.85  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH--CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      ++.+||+|+|+|.+|+..++.|.+  .+.++++|+|.+          .+...+..++.+....|     -+.++++ .+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~~-----~~~eell-~~   67 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPPV-----VPLDQLA-TH   67 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCccc-----CCHHHHh-cC
Confidence            456899999999999999998876  478999998874          33444443332211111     2335665 47


Q ss_pred             cceeeeccccCccccccccc-c--cceEEEecCCCC-CCHHHHHHHHhCCceE-ec
Q 014463          296 CDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHP-TDPEADEILSKKGVVI-LP  346 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p-~t~eA~~iL~~rGI~v-iP  346 (424)
                      +|+++.|+-.... .+-+.. +  +..++++..-.. ...+..+..+++|+.+ +|
T Consensus        68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~  122 (271)
T PRK13302         68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP  122 (271)
T ss_pred             CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence            9999999865433 333222 2  335777632211 1234445677888764 54

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.98  E-value=0.049  Score=54.76  Aligned_cols=83  Identities=24%  Similarity=0.310  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee
Q 014463          207 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM  286 (424)
Q Consensus       207 ~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i  286 (424)
                      ++.+...++. +.+++|+|.|.|.+|+.+++.|...|++.|.|+|.+          .+...++.++.+.       ..+
T Consensus       166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~  227 (311)
T cd05213         166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV  227 (311)
T ss_pred             HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence            4444334443 789999999999999999999998887666688874          3444444444321       222


Q ss_pred             cCCcccc--cccceeeeccccCc
Q 014463          287 DLNDLLV--HECDVLVPCALGGV  307 (424)
Q Consensus       287 ~~~~ll~--~~~DIliPaA~~~~  307 (424)
                      +.+++.+  .++||+|-|.....
T Consensus       228 ~~~~~~~~l~~aDvVi~at~~~~  250 (311)
T cd05213         228 PLDELLELLNEADVVISATGAPH  250 (311)
T ss_pred             eHHHHHHHHhcCCEEEECCCCCc
Confidence            2222221  36899888866443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.96  E-value=0.23  Score=49.08  Aligned_cols=169  Identities=13%  Similarity=0.125  Sum_probs=91.0

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV  300 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli  300 (424)
                      +|.|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+....+. +.       ... +..+++ .+||++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~-------~~~~~~~~~~-~~aDivi   60 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GA-------VTAETARQVT-EQADVIF   60 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CC-------cccCCHHHHH-hcCCEEE
Confidence            48999999999999999999999987 55553          2333332222 11       111 222333 4799999


Q ss_pred             eccccCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccc------cccC--cchh----
Q 014463          301 PCALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYA------NSGG--VTVS----  358 (424)
Q Consensus       301 PaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~la------NaGG--Vi~s----  358 (424)
                      -|.-........       ...+ .-++|+...+...  +.+..+.+.++|+.++.--+.      -.|-  ++++    
T Consensus        61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~  140 (291)
T TIGR01505        61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQA  140 (291)
T ss_pred             EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHH
Confidence            986543211111       1122 3368887665542  234556788899876642221      1110  1111    


Q ss_pred             hHHHh----hhccc----cCC-CHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          359 YFEWV----QNIQG----FMW-EEE----KVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       359 ~~E~~----qn~~~----~~w-~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                      .++.+    +.+..    ... ...    -++.-+.......+.+.+..+++.|+++.+..-.+.
T Consensus       141 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~  205 (291)
T TIGR01505       141 VFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR  205 (291)
T ss_pred             HHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            12222    11111    011 111    122233333345578888999999999988776554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.95  E-value=0.02  Score=56.17  Aligned_cols=124  Identities=20%  Similarity=0.203  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEEcCCCceeCCCCCCHHHH
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDITGAIKNPNGIDVPAL  267 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~i~~~~GlDi~~L  267 (424)
                      -||-=+..++..+++..|.+|++.||++.|.|..|-.++++|.+.    |.      +=+-+.|++|-+++.. -|+..-
T Consensus         3 GTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~   81 (255)
T PF03949_consen    3 GTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPH   81 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHH
T ss_pred             hhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChh
Confidence            356666677788888889999999999999999999999999876    87      3344899999999755 333333


Q ss_pred             HHHHHh-cCCcccCCCCeeecCCc-ccccccceeeecc-ccCccccccccccc----ceEEEecCCC
Q 014463          268 LKYKKS-NKSLNDFQGGNAMDLND-LLVHECDVLVPCA-LGGVLNKENAADVK----AKFIIEAANH  327 (424)
Q Consensus       268 ~~~~~~-~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA-~~~~It~~na~~i~----akiIvEgAN~  327 (424)
                      ...+.+ ......     ..+-.| +-..+.||||=++ .++.+|++-++...    -.+|---+|-
T Consensus        82 ~~~~a~~~~~~~~-----~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP  143 (255)
T PF03949_consen   82 KKPFARKTNPEKD-----WGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP  143 (255)
T ss_dssp             HHHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred             hhhhhccCccccc-----ccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence            332222 111111     111122 3356789999888 89999999988864    4688888884

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.91  E-value=0.028  Score=55.03  Aligned_cols=109  Identities=22%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      ++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..-...          . .+ ..+..+     -+-++++. ++|+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv   63 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV   63 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence            58999998 9999999998876 579999999986421110          0 00 111111     11234554 7999


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCCCH-HHHHHH---HhCCceEeccccc
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP-EADEIL---SKKGVVILPDIYA  350 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~-eA~~iL---~~rGI~viPD~la  350 (424)
                      +|-|+..... .+++..   -+..+|++  ...+++ +++++.   ++.++++.|.+.-
T Consensus        64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~  119 (257)
T PRK00048         64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI  119 (257)
T ss_pred             EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence            9988865544 444443   25668877  334444 444333   3466778787643

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.89  E-value=0.044  Score=55.53  Aligned_cols=32  Identities=41%  Similarity=0.652  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~  252 (424)
                      .||+|-|||..|+.+++.+.+++  .+||||.|.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~   35 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL   35 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            58999999999999999998875  899999995

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.88  E-value=0.0069  Score=52.74  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      +||+|.|+ |++|+.+++.+.+ .+..++++.|++..-  -.|-|+.++.....     .   +.... +.++++.. +|
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~~-----~---~~~v~~~l~~~~~~-~D   69 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIGP-----L---GVPVTDDLEELLEE-AD   69 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcCC-----c---ccccchhHHHhccc-CC
Confidence            48999999 9999999999987 899999999987621  23556655432210     0   11111 12455655 99


Q ss_pred             eeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHHh
Q 014463          298 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSK  339 (424)
Q Consensus       298 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~~  339 (424)
                      |+|-+.....+. +|++.   -+..+|++=.-  .+++-.+.|++
T Consensus        70 VvIDfT~p~~~~-~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~  111 (124)
T PF01113_consen   70 VVIDFTNPDAVY-DNLEYALKHGVPLVIGTTG--FSDEQIDELEE  111 (124)
T ss_dssp             EEEEES-HHHHH-HHHHHHHHHT-EEEEE-SS--SHHHHHHHHHH
T ss_pred             EEEEcCChHHhH-HHHHHHHhCCCCEEEECCC--CCHHHHHHHHH
Confidence            999997443322 22222   26667664332  34444344444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.84  E-value=0.022  Score=55.95  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      +||+|+|+|++|+..++.|.+.  +.++++|+|.+          .+...+..++.+       .... +.++++ .++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-------~~~~~~~~ell-~~~D   63 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-------AKACLSIDELV-EDVD   63 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence            4899999999999999988765  58899998875          233333332211       1122 335666 6899


Q ss_pred             eeeeccccCccccccccc-c--cceEEEecC----CCCCCHHHHHHHHhCCceEe
Q 014463          298 VLVPCALGGVLNKENAAD-V--KAKFIIEAA----NHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       298 IliPaA~~~~It~~na~~-i--~akiIvEgA----N~p~t~eA~~iL~~rGI~vi  345 (424)
                      +++.|+..... .+.+.. +  +..+|++..    +-+...+..+..+++|+.+.
T Consensus        64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~  117 (265)
T PRK13304         64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY  117 (265)
T ss_pred             EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence            99999854443 233222 2  345666532    22222334456777886543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.81  E-value=0.12  Score=50.58  Aligned_cols=169  Identities=21%  Similarity=0.315  Sum_probs=100.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc---cc--c
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VH--E  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll---~~--~  295 (424)
                      +++-++|.|.+|.++++.|.+.|..|| +-|.          |..++.+.+...  ...   +.  +.++++   ..  -
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~----------n~~av~~~~~~g--a~~---a~--sl~el~~~L~~pr~   62 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVV-GYDV----------NQTAVEELKDEG--ATG---AA--SLDELVAKLSAPRI   62 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEE-EEcC----------CHHHHHHHHhcC--Ccc---cc--CHHHHHHhcCCCcE
Confidence            357789999999999999999999999 4555          344555555432  111   10  112221   11  1


Q ss_pred             cceeeecc-ccCcccccccccccc-eEEEecCCCCCC--HHHHHHHHhCCceEeccccccccCcchhh----------HH
Q 014463          296 CDVLVPCA-LGGVLNKENAADVKA-KFIIEAANHPTD--PEADEILSKKGVVILPDIYANSGGVTVSY----------FE  361 (424)
Q Consensus       296 ~DIliPaA-~~~~It~~na~~i~a-kiIvEgAN~p~t--~eA~~iL~~rGI~viPD~laNaGGVi~s~----------~E  361 (424)
                      +=+.+|++ +-+.+-++-++.+.+ .+|++|-|.-.-  .+-.+.|.++||.++-  .--|||+--.-          -|
T Consensus        63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~  140 (300)
T COG1023          63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEE  140 (300)
T ss_pred             EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHH
Confidence            23677886 333333344444443 699999999864  3444689999999874  46677773210          00


Q ss_pred             Hhhhcc-----------ccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014463          362 WVQNIQ-----------GFMWE--------EEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL  409 (424)
Q Consensus       362 ~~qn~~-----------~~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~  409 (424)
                      -++.+.           ++-..        -.-|...+|.-|-+++.+=++.-++  ++.++.+.|-++
T Consensus       141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW  209 (300)
T COG1023         141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW  209 (300)
T ss_pred             HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            001000           00000        1236667777888888887777665  566777777554

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.81  E-value=0.16  Score=45.58  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=42.8

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..|..|+..    +++++|.+++|++|.|.| -..||.-++.+|.++|+.|. +++++
T Consensus         9 p~t~~a~~~----ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~   61 (140)
T cd05212           9 SPVAKAVKE----LLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK   61 (140)
T ss_pred             ccHHHHHHH----HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence            466666554    456679999999999999 58899999999999999988 66764

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.72  E-value=0.025  Score=60.24  Aligned_cols=170  Identities=15%  Similarity=0.143  Sum_probs=99.1

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc--C-CcccCCCCeeecCCcccc--cccc
Q 014463          223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN--K-SLNDFQGGNAMDLNDLLV--HECD  297 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g-~v~~~~~~~~i~~~~ll~--~~~D  297 (424)
                      |.|+|.|++|+++|+.|.++|.+|+ +.|.+          .+++.+..++.  + .+..+     -+.+++.+  .+||
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d   65 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR   65 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence            7899999999999999999999977 55653          34444444331  1 11111     12234432  2589


Q ss_pred             eeeeccccCcccccccc----cc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccc------------ccccCcchh
Q 014463          298 VLVPCALGGVLNKENAA----DV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY------------ANSGGVTVS  358 (424)
Q Consensus       298 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~l------------aNaGGVi~s  358 (424)
                      +++-|...+...++.+.    .+ .-++|+++.|.-  .|.+..+.|.++||.++---+            .-.||=- .
T Consensus        66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~-~  144 (467)
T TIGR00873        66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSA-E  144 (467)
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCH-H
Confidence            88877655443333332    23 347999999963  355555789999998863221            1122221 1


Q ss_pred             hHHHhhhc----cc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 014463          359 YFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL  409 (424)
Q Consensus       359 ~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~  409 (424)
                      .||.++.+    ..       ..|        --.-|+.-++..+.+++.|.++..+ ..++++.+.+.++
T Consensus       145 a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~  215 (467)
T TIGR00873       145 AWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF  215 (467)
T ss_pred             HHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            13333221    00       001        0123566677777788888888774 6888877655444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.63  E-value=0.13  Score=55.65  Aligned_cols=108  Identities=28%  Similarity=0.304  Sum_probs=68.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |..+.|+||.|.|+|++|+.+|+.|...|++|++. |.+.        +.+..    ...       +.+..+.++++. 
T Consensus       135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~----~~~-------g~~~~~l~ell~-  193 (526)
T PRK13581        135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY-DPYI--------SPERA----AQL-------GVELVSLDELLA-  193 (526)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHH----Hhc-------CCEEEcHHHHHh-
Confidence            34589999999999999999999999999999843 4321        11111    110       122334455553 


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~  343 (424)
                      +||+++-|.-     .+.|+.+....++ -.+++.-|-+++ +.+|- +.|++.-|.
T Consensus       194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  250 (526)
T PRK13581        194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA  250 (526)
T ss_pred             hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence            7888887763     3345555555442 346777777774 54443 567666653

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.62  E-value=0.11  Score=52.86  Aligned_cols=32  Identities=34%  Similarity=0.626  Sum_probs=27.9

Q ss_pred             eEEEEecChHHHHHHHHHHHCC----CEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~  253 (424)
                      ||+|.|||.+|+.+++.|.+.+    ..|++|.|..
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~   36 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA   36 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence            5899999999999999998764    8999998853

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.60  E-value=0.049  Score=50.59  Aligned_cols=123  Identities=23%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      -|+.-.+..++..++++|.+++++++.|.|. |.+|+.+++.|.+.|++|+ +.+.+          .+++.+..+.-..
T Consensus         6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~----------~~~~~~l~~~l~~   74 (194)
T cd01078           6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRD----------LERAQKAADSLRA   74 (194)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHHHHh
Confidence            5777777888888888899999999999996 9999999999999999887 44443          2333333221100


Q ss_pred             cccCCCCeee---cCCccc--ccccceeeeccccCcccccccc-ccc-ceEEEecCCCC-CCHH
Q 014463          277 LNDFQGGNAM---DLNDLL--VHECDVLVPCALGGVLNKENAA-DVK-AKFIIEAANHP-TDPE  332 (424)
Q Consensus       277 v~~~~~~~~i---~~~~ll--~~~~DIliPaA~~~~It~~na~-~i~-akiIvEgAN~p-~t~e  332 (424)
                      -.+. .....   +.+++.  -.+||++|-|.-.+..+..... ..+ .++|++-+..| ++++
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~  137 (194)
T cd01078          75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIE  137 (194)
T ss_pred             hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcc
Confidence            0000 00111   112221  1479999988765542221122 122 36888866655 5664

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.57  E-value=0.079  Score=52.87  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.|-.|++..+    ++.+.+++|++|+|.|.|+ ||+.++.+|.++|+.|. |+++
T Consensus       139 ~p~T~~gii~~L----~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~  191 (283)
T PRK14192        139 GSATPAGIMRLL----KAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS  191 (283)
T ss_pred             cCCcHHHHHHHH----HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence            367877776664    4578899999999999998 99999999999999554 8876

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.55  E-value=0.26  Score=53.33  Aligned_cols=156  Identities=21%  Similarity=0.229  Sum_probs=88.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      |..+.|+||.|.|+|++|+.+|+.|...|++|++. |...        +.+..    ...       +.+.. +.++++ 
T Consensus       133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~----~~~-------g~~~~~~l~ell-  191 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DPYI--------SPERA----EQL-------GVELVDDLDELL-  191 (525)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHH----Hhc-------CCEEcCCHHHHH-
Confidence            45699999999999999999999999999999853 4321        11111    111       11222 234555 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCcchhhHHHhh
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQ  364 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laNaGGVi~s~~E~~q  364 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-|=+++ +.+| .+.|++..|. ..=|...+=--. -+.+.-..
T Consensus       192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~  270 (525)
T TIGR01327       192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD  270 (525)
T ss_pred             hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence            47899887763     3456555555542 347788888874 5444 3677777775 334443332211 12221112


Q ss_pred             h---ccccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463          365 N---IQGFMWEEEKVNHELKRYMMSAFKDIK  392 (424)
Q Consensus       365 n---~~~~~w~~e~v~~~l~~~m~~~~~~v~  392 (424)
                      |   ..|..|..++...++...+.+.+.+.+
T Consensus       271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~  301 (525)
T TIGR01327       271 NVIATPHLGASTREAQENVATQVAEQVLDAL  301 (525)
T ss_pred             CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence            2   135556555556655554444444443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.54  E-value=0.013  Score=51.74  Aligned_cols=72  Identities=22%  Similarity=0.353  Sum_probs=42.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      ..||.|+|.|+||.++++.|.+.|..|++|...+          .....+...      .++.....+.++++ .++|++
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~------~~~~~~~~~~~~~~-~~aDlv   72 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAA------FIGAGAILDLEEIL-RDADLV   72 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGG-CC-SEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------ccccccccc------cccccccccccccc-ccCCEE
Confidence            4799999999999999999999999999886642          111111111      12222334445555 479999


Q ss_pred             eeccccCcc
Q 014463          300 VPCALGGVL  308 (424)
Q Consensus       300 iPaA~~~~I  308 (424)
                      +-|.--+.|
T Consensus        73 ~iavpDdaI   81 (127)
T PF10727_consen   73 FIAVPDDAI   81 (127)
T ss_dssp             EE-S-CCHH
T ss_pred             EEEechHHH
Confidence            998655544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN00203 glutamyl-tRNA reductase

Probab=95.53  E-value=0.48  Score=51.23  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             HHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463          207 TEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA  285 (424)
Q Consensus       207 ~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~  285 (424)
                      ++.+.+.++. ++.+++|.|.|.|.+|+.+++.|...|++-|.|.+.+          .+...++.++.+..    ....
T Consensus       252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~----~i~~  317 (519)
T PLN00203        252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV----EIIY  317 (519)
T ss_pred             HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC----ceEe
Confidence            3333345564 5899999999999999999999999997544476664          33444444332111    0011


Q ss_pred             ecCCccc--ccccceeeecc--ccCccccccccccc--------ceEEEecCCCC-CCHHH
Q 014463          286 MDLNDLL--VHECDVLVPCA--LGGVLNKENAADVK--------AKFIIEAANHP-TDPEA  333 (424)
Q Consensus       286 i~~~~ll--~~~~DIliPaA--~~~~It~~na~~i~--------akiIvEgAN~p-~t~eA  333 (424)
                      .+.+++.  -.++||+|-|.  ....|+.+.++.+.        -+++++-|... +.|+.
T Consensus       318 ~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v  378 (519)
T PLN00203        318 KPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV  378 (519)
T ss_pred             ecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence            1222221  25799999885  35567877766542        24889888754 45544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.47  E-value=0.3  Score=51.18  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.++|..|++ .|.+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~~   35 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDIN   35 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEE-EeCC
Confidence            6899999999999999999999999984 4653

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.45  E-value=0.21  Score=49.50  Aligned_cols=135  Identities=19%  Similarity=0.233  Sum_probs=79.7

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK  275 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g  275 (424)
                      .-|+|-.+.-+.+.++++|++++..+|+|.|. |.+|+.+++.|..++.++.-+- . +    .+-.+.+.|..      
T Consensus       144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~-r-~----aea~~rq~l~~------  211 (351)
T COG5322         144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLL-R-D----AEARNRQRLTL------  211 (351)
T ss_pred             ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEec-c-c----HHhhhhhhhhh------
Confidence            36888888888888889999999999999997 9999999999998888776442 1 1    01111111111      


Q ss_pred             CcccCCCCe-eecCCcccccccceeeeccc--cCcccccccccccceEEEecCCCCCCHHHHHHHHhCC-ceEecccc
Q 014463          276 SLNDFQGGN-AMDLNDLLVHECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG-VVILPDIY  349 (424)
Q Consensus       276 ~v~~~~~~~-~i~~~~ll~~~~DIliPaA~--~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rG-I~viPD~l  349 (424)
                       +..-++.. .++.+.-+-.+.|+++-|+.  +..|+++-.+. .| +|++++- |-  +.+..-+..| |.++|.=+
T Consensus       212 -l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~g~~I~pq~lkp-g~-~ivD~g~-P~--dvd~~vk~~~~V~Ii~GGl  283 (351)
T COG5322         212 -LQEELGRGKIMSLDYALPQEDILVWVASMPKGVEIFPQHLKP-GC-LIVDGGY-PK--DVDTSVKNVGGVRIIPGGL  283 (351)
T ss_pred             -cccccCCCeeeeccccccccceEEEEeecCCCceechhhccC-Ce-EEEcCCc-Cc--ccccccccCCCeEEecCcc
Confidence             11112333 33443333333444445554  45677766654 34 6666653 21  1122234444 77776433

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.44  E-value=0.05  Score=54.75  Aligned_cols=53  Identities=17%  Similarity=0.139  Sum_probs=45.2

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++.|.+++|++|+|+|-| .||..+|.+|.++|+.|. +++++
T Consensus       139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~  192 (301)
T PRK14194        139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR  192 (301)
T ss_pred             CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence            36898887665    5566899999999999995 999999999999999987 77654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.40  E-value=0.24  Score=49.36  Aligned_cols=132  Identities=16%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      =+.|+..+++.    .+.++++++|.|.|.|.+|+.++..|.+.|++=|.|.|.+          .++..++.+.-+  .
T Consensus       110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~--~  173 (284)
T PRK12549        110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELN--A  173 (284)
T ss_pred             CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHH--h
Confidence            37788777753    3346788999999999999999999999998545588874          233333322110  0


Q ss_pred             cCCCCeeecCCccc--ccccceeeeccccCcc-ccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463          279 DFQGGNAMDLNDLL--VHECDVLVPCALGGVL-NKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP  346 (424)
Q Consensus       279 ~~~~~~~i~~~~ll--~~~~DIliPaA~~~~I-t~~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP  346 (424)
                      .++.......+++.  -.++||+|-|.--+.- ++.   +...+ ...+|.+-.-+|....--+.-+++|..++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~  248 (284)
T PRK12549        174 RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLD  248 (284)
T ss_pred             hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEec
Confidence            11111222222221  1469999987422210 000   11112 345788888888543444566778877544

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.049  Score=54.39  Aligned_cols=91  Identities=21%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..|++..    +++++.+++|++++|.|-++ ||.-++.+|.++|+.|. +++++-          ..|.+     
T Consensus       139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~T----------~~l~~-----  198 (285)
T PRK10792        139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRFT----------KNLRH-----  198 (285)
T ss_pred             CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECCC----------CCHHH-----
Confidence            47899888765    55678999999999999988 99999999999999887 777641          00111     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAA  325 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgA  325 (424)
                                       ....+||+|-|.. .+.|+.+.++. . .+|++.+
T Consensus       199 -----------------~~~~ADIvi~avG~p~~v~~~~vk~-g-avVIDvG  231 (285)
T PRK10792        199 -----------------HVRNADLLVVAVGKPGFIPGEWIKP-G-AIVIDVG  231 (285)
T ss_pred             -----------------HHhhCCEEEEcCCCcccccHHHcCC-C-cEEEEcc
Confidence                             1346788888874 56677766654 3 3444444

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.37  E-value=0.07  Score=53.15  Aligned_cols=167  Identities=13%  Similarity=0.196  Sum_probs=92.5

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV  300 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli  300 (424)
                      +|.|+|.|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+..        .... ++.++. .+||++|
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~g--------~~~~~s~~~~~-~~aDvVi   62 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDKG--------ATPAASPAQAA-AGAEFVI   62 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CcccCCHHHHH-hcCCEEE
Confidence            79999999999999999999999876 55653          33343333321        1111 223333 4789999


Q ss_pred             eccccCc-----cccc--ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccc-------cccccCcc--h----
Q 014463          301 PCALGGV-----LNKE--NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDI-------YANSGGVT--V----  357 (424)
Q Consensus       301 PaA~~~~-----It~~--na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~-------laNaGGVi--~----  357 (424)
                      -|--...     +...  -.+.+ +-++|++-...+.  +.+..+.+.++|+.++ |.       -+..|-.+  +    
T Consensus        63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l-dapV~g~~~~a~~g~l~~~~gg~~  141 (296)
T PRK15461         63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM-DVPVGRTSDNAITGTLLLLAGGTA  141 (296)
T ss_pred             EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE-EccCCCCHHHHHhCcEEEEECCCH
Confidence            8865442     2211  11223 3467777777653  4566678999998866 21       11222111  1    


Q ss_pred             hhHHHhhh----cc-ccCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          358 SYFEWVQN----IQ-GFMWEE--------EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       358 s~~E~~qn----~~-~~~w~~--------e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                      ..||.++.    +. ..++-.        .-++.-+...+...+.|.+..+++.|+++.....++
T Consensus       142 ~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l  206 (296)
T PRK15461        142 EQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM  206 (296)
T ss_pred             HHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            11332221    11 111110        112233333445566778888999999987755443

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.37  E-value=0.065  Score=49.11  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+.|..|++..    +++.+.+++|++++|.|-+ .||.-++.+|.++|+.|. +++++
T Consensus        15 ~~PcTp~aii~l----L~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~   69 (160)
T PF02882_consen   15 FVPCTPLAIIEL----LEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK   69 (160)
T ss_dssp             S--HHHHHHHHH----HHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred             CcCCCHHHHHHH----HHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence            346898888766    4567889999999999976 599999999999999987 77774

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.30  E-value=0.05  Score=58.35  Aligned_cols=173  Identities=13%  Similarity=0.104  Sum_probs=102.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh---cCCcccCCCCeeecCCccccc--c
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NKSLNDFQGGNAMDLNDLLVH--E  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~---~g~v~~~~~~~~i~~~~ll~~--~  295 (424)
                      .+|.++|.|++|+++|+.|.++|.+|+ |.|.+          .++..++.+.   .|. ..+..+  -+.+++.+.  .
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~a--~s~~e~v~~l~~   72 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYGF--KDPEDFVLSIQK   72 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-cccccC--CCHHHHHhcCCC
Confidence            369999999999999999999999987 77764          3344333331   111 100001  123444432  5


Q ss_pred             cceeeeccccCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------------cccccCcc
Q 014463          296 CDVLVPCALGGVLNKEN----AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------------YANSGGVT  356 (424)
Q Consensus       296 ~DIliPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~------------laNaGGVi  356 (424)
                      ||++|-|-..+...++.    .+.+ .-++|+++.|..  .|.+..+.++++|+.++=--            ..-.||=-
T Consensus        73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~  152 (493)
T PLN02350         73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSF  152 (493)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCH
Confidence            89998886544332222    2333 457999999985  46666788999999887211            11223321


Q ss_pred             hhhHHHhhh----ccc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q 014463          357 VSYFEWVQN----IQG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFT  408 (424)
Q Consensus       357 ~s~~E~~qn----~~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~  408 (424)
                      . .||-++.    +..       ..|        --.-|+.-++..+.+.+.|.+..+++ .|+++.+.+.+
T Consensus       153 ~-a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v  223 (493)
T PLN02350        153 E-AYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV  223 (493)
T ss_pred             H-HHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            1 1232221    110       111        11236666777777888888888888 59988776655

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.30  E-value=0.38  Score=47.51  Aligned_cols=131  Identities=15%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      -.+.|...+++.   ..+.+++++++.|.|.|.+|+.++..|.+.| .+|+ |.+.+          .+++.+..++...
T Consensus       104 TD~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~----------~~~a~~l~~~~~~  169 (278)
T PRK00258        104 TDGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT----------VERAEELAKLFGA  169 (278)
T ss_pred             ccHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhh
Confidence            346676666542   2466789999999999999999999999999 5555 77774          2333333332211


Q ss_pred             cccCCCCee-ecCCcccccccceeeeccccCccc-----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463          277 LNDFQGGNA-MDLNDLLVHECDVLVPCALGGVLN-----KENAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP  346 (424)
Q Consensus       277 v~~~~~~~~-i~~~~ll~~~~DIliPaA~~~~It-----~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP  346 (424)
                      ..   .... .+..+.+ .++||+|=|.-.+.-.     +-....+ .-.+|++-.-+|..-.--+.-+++|+.++.
T Consensus       170 ~~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~  242 (278)
T PRK00258        170 LG---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTID  242 (278)
T ss_pred             cc---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeecC
Confidence            10   0011 1111112 4689999776433321     1111223 246888888888533344556778877544

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.27  E-value=0.1  Score=52.16  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      -.+.|.+|++..    +++++.+++|++++|.| ...||.-++.+|.++++.|. +++++..       |+.   +    
T Consensus       138 ~~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T~-------~l~---~----  198 (284)
T PRK14177        138 YLPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKTQ-------NLP---S----  198 (284)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H----
Confidence            347899988764    55679999999999999 57899999999999999987 8876420       111   0    


Q ss_pred             cCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       274 ~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                        +...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus       199 ------------------~~~~ADIvIsAvGk~~~i~~~~ik~-gavVIDvGin  233 (284)
T PRK14177        199 ------------------IVRQADIIVGAVGKPEFIKADWISE-GAVLLDAGYN  233 (284)
T ss_pred             ------------------HHhhCCEEEEeCCCcCccCHHHcCC-CCEEEEecCc
Confidence                              2347888887764 66777777665 4444444444

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=95.22  E-value=0.11  Score=47.13  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~  253 (424)
                      .||+|-|||.+|+.+++.+. +....||+|.|..
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             CEEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            37999999999999999887 5668999999874

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.19  E-value=0.061  Score=53.72  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNV-GSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.|..|++..    +++++++++|++|+|.|.|++ |+-++.+|.++|+.|. ++++
T Consensus       138 ~PcTp~aii~l----L~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs  190 (285)
T PRK14189        138 RPCTPYGVMKM----LESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS  190 (285)
T ss_pred             cCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence            46888887655    567799999999999998777 9999999999999987 5554

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.15  E-value=0.11  Score=51.66  Aligned_cols=83  Identities=14%  Similarity=0.190  Sum_probs=62.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+.|..|++..    +++++.+++|++++|+| ...||.-++.+|.++++.|. +++++..       |+.   +     
T Consensus       138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T~-------~l~---~-----  197 (278)
T PRK14172        138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKTK-------NLK---E-----  197 (278)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H-----
Confidence            46898888665    56678999999999999 57899999999999999886 8876420       111   1     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                       +...+||+|-|+. .+.|+.+.++.
T Consensus       198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~  222 (278)
T PRK14172        198 -----------------VCKKADILVVAIGRPKFIDEEYVKE  222 (278)
T ss_pred             -----------------HHhhCCEEEEcCCCcCccCHHHcCC
Confidence                             2346888888875 66777777664

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.05  E-value=0.087  Score=52.54  Aligned_cols=170  Identities=17%  Similarity=0.214  Sum_probs=94.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D  297 (424)
                      ++|.|+|+|++|+..++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +++++.+.  .+|
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~ad   61 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGKL-G-------ITARHSLEELVSKLEAPR   61 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHHhCCCCC
Confidence            379999999999999999999999987 66663          2333333221 1       1111 23344432  278


Q ss_pred             eeeeccccCcccccc----cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEecccc------ccccC-cchh----h
Q 014463          298 VLVPCALGGVLNKEN----AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIY------ANSGG-VTVS----Y  359 (424)
Q Consensus       298 IliPaA~~~~It~~n----a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~l------aNaGG-Vi~s----~  359 (424)
                      +++-|--.....++-    .+.+ .-++|++-++. | .+.+..+.+.++|+.++---+      +-.|= +.++    .
T Consensus        62 vVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~  141 (299)
T PRK12490         62 TIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEI  141 (299)
T ss_pred             EEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHH
Confidence            888775443222222    2223 23588888776 4 345556789999998763111      11110 1111    1


Q ss_pred             HHHhhh----ccc----cCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 014463          360 FEWVQN----IQG----FMWE--------EEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTL  409 (424)
Q Consensus       360 ~E~~qn----~~~----~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~  409 (424)
                      |+.++.    +..    .++-        -.-++.-+.-.+..++.|.+..+++.+  +++.+...++
T Consensus       142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            233322    111    1110        122444455555677788888899988  8877665554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.95  E-value=0.069  Score=56.17  Aligned_cols=159  Identities=19%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DL  288 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~  288 (424)
                      ..+|+|.|+|+||+.+++.|.++          +.+|++|+|++....  .+++                +++.... +.
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~   64 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP   64 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence            46899999999999999988543          478999999863211  1111                1111111 23


Q ss_pred             Ccccc-cccceeeeccccCccccccc-ccccc--eEEEecCCCCC-CH---HHHHHHHhCCceEeccccccccCc--chh
Q 014463          289 NDLLV-HECDVLVPCALGGVLNKENA-ADVKA--KFIIEAANHPT-DP---EADEILSKKGVVILPDIYANSGGV--TVS  358 (424)
Q Consensus       289 ~~ll~-~~~DIliPaA~~~~It~~na-~~i~a--kiIvEgAN~p~-t~---eA~~iL~~rGI~viPD~laNaGGV--i~s  358 (424)
                      ++++. .++|+++.|.-+...+.+-+ .-+++  -+|++  |-+. ..   +-.+..+++|+.+.-.- +-.||+  +-.
T Consensus        65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~fEa-sV~ggiPii~~  141 (426)
T PRK06349         65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLYFEA-AVAGGIPIIKA  141 (426)
T ss_pred             HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEEEEE-EeeccCchHHH
Confidence            56664 57999999964433333333 12333  34443  4332 22   22345668888655221 122232  111


Q ss_pred             hHHHhhh--cccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          359 YFEWVQN--IQGF----MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       359 ~~E~~qn--~~~~----~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      --+.+..  +...    .=+-.-+..++.+. ...|.+++..|++.|.
T Consensus       142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy  188 (426)
T PRK06349        142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY  188 (426)
T ss_pred             HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence            1122111  0000    00223344444321 4578999999998875

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.94  E-value=0.064  Score=54.20  Aligned_cols=107  Identities=20%  Similarity=0.321  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ++.|+||.|.|+|++|+.+|++|...|++|++. |..+   +++..                     +..+-++++ ..+
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~l~ell-~~s  198 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLPLDELL-PQV  198 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccCHHHHH-HhC
Confidence            589999999999999999999999999999864 3321   11110                     011223444 367


Q ss_pred             ceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          297 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       297 DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                      |+++-+.-     .+.|+++...+++ --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus       199 Div~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf  260 (317)
T PRK06487        199 DALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVL  260 (317)
T ss_pred             CEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence            88886653     3456666666664 357777788874 44443 567766664 334443

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.92  E-value=0.12  Score=51.68  Aligned_cols=91  Identities=21%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..||+..    +++.+.+++|++|+|.| ...||+-++.+|.++++.|. ++.++-    +   |   |.+     
T Consensus       137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T----~---n---l~~-----  196 (282)
T PRK14166        137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT----K---D---LSL-----  196 (282)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---C---HHH-----
Confidence            46899888765    45578999999999999 57799999999999999987 777631    0   1   111     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEec
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEA  324 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEg  324 (424)
                                       +...+||+|-|+. .+.|+.+.++. .|-+|=-|
T Consensus       197 -----------------~~~~ADIvIsAvGkp~~i~~~~vk~-GavVIDvG  229 (282)
T PRK14166        197 -----------------YTRQADLIIVAAGCVNLLRSDMVKE-GVIVVDVG  229 (282)
T ss_pred             -----------------HHhhCCEEEEcCCCcCccCHHHcCC-CCEEEEec
Confidence                             2357899998875 66778776664 34333333

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.89  E-value=0.15  Score=50.94  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      ..++|.+|++..    +++++.+++|++++|+| ...||.-++.+|.++++.|. ++.++.       -|+.   +    
T Consensus       135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~T-------~~l~---~----  195 (282)
T PRK14169        135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSKT-------RNLK---Q----  195 (282)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCCC-------CCHH---H----
Confidence            347999888765    55679999999999999 57799999999999999987 776642       0111   1    


Q ss_pred             cCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       274 ~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                        +...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus       196 ------------------~~~~ADIvI~AvG~p~~i~~~~vk~-GavVIDvGin  230 (282)
T PRK14169        196 ------------------LTKEADILVVAVGVPHFIGADAVKP-GAVVIDVGIS  230 (282)
T ss_pred             ------------------HHhhCCEEEEccCCcCccCHHHcCC-CcEEEEeecc
Confidence                              2346788888774 66677766654 4433333333

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=94.87  E-value=0.058  Score=55.04  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             EEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc--CCcccCCC-------Ce-ee--cCC
Q 014463          223 FAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN--KSLNDFQG-------GN-AM--DLN  289 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g~v~~~~~-------~~-~i--~~~  289 (424)
                      |+|.|||.+|+.+++.+.+ .+.+||||+|.+          .+......+..  .+...++.       .. .+  +.+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~----------~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e   70 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS----------PDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE   70 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC----------hHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence            5899999999999998764 578999999953          22222222211  11111111       00 11  234


Q ss_pred             cccccccceeeeccccCcccccccccc---cceEEEecC
Q 014463          290 DLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAA  325 (424)
Q Consensus       290 ~ll~~~~DIliPaA~~~~It~~na~~i---~akiIvEgA  325 (424)
                      +++ .+||++++|. +...+..|++.+   ++|.|.-|+
T Consensus        71 eLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~  107 (333)
T TIGR01546        71 DLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG  107 (333)
T ss_pred             HHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence            565 4799999995 556666666543   555555443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.87  E-value=0.36  Score=50.77  Aligned_cols=32  Identities=34%  Similarity=0.533  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  252 (424)
                      .||+|.|||..|+.+++.+.+ .+.+||+|-|.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            499999999999999999875 68999999774

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.87  E-value=0.1  Score=52.19  Aligned_cols=52  Identities=29%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|..|++..    +++++.+++|++|+|.|-| .||..+|.+|.++|+.|. ++++
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs  189 (285)
T PRK14191        137 VPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI  189 (285)
T ss_pred             CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence            47899888665    5567899999999999988 999999999999999986 7765

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=94.86  E-value=0.33  Score=49.64  Aligned_cols=32  Identities=31%  Similarity=0.571  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  252 (424)
                      .+|+|.|||.+|+.+.+.|.+.    ..++++|-|.
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~   37 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL   37 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            4799999999999999999874    5789988764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.84  E-value=0.43  Score=48.55  Aligned_cols=108  Identities=24%  Similarity=0.361  Sum_probs=70.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |.++.|+|+.|.|+|.+|+.+|+.+.-.|++|+ ..|.+.       .  ++..    +..      +...++.++++ .
T Consensus       141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~~~-------~--~~~~----~~~------~~~y~~l~ell-~  199 (324)
T COG1052         141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDRSP-------N--PEAE----KEL------GARYVDLDELL-A  199 (324)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECCCC-------C--hHHH----hhc------CceeccHHHHH-H
Confidence            457999999999999999999999999999998 445432       1  1110    000      12334444555 4


Q ss_pred             ccceeeeccc-----cCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~a-kiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ++|+++-..-     .+.||.+-..+.+- -+++.-|=+++ +.+| .+.|++.-|.
T Consensus       200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~  256 (324)
T COG1052         200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA  256 (324)
T ss_pred             hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence            7888876552     33455555555543 58888888885 4444 4678877665

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.81  E-value=0.11  Score=55.84  Aligned_cols=35  Identities=23%  Similarity=0.148  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~  197 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR  197 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            468999999999999999999999999866 67764

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.80  E-value=0.13  Score=51.70  Aligned_cols=83  Identities=17%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..|++.    ++++.+.+++|++++|.| ...||.-++.+|.++++.|. +++++.    +   |   |.+     
T Consensus       140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T----~---~---l~~-----  199 (294)
T PRK14187        140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT----R---D---LAD-----  199 (294)
T ss_pred             cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC----C---C---HHH-----
Confidence            3689988765    456679999999999999 57799999999999999987 777642    0   1   111     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                       +...+||+|-|.. .+.|+.+.++.
T Consensus       200 -----------------~~~~ADIvVsAvGkp~~i~~~~ik~  224 (294)
T PRK14187        200 -----------------YCSKADILVAAVGIPNFVKYSWIKK  224 (294)
T ss_pred             -----------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence                             2347788888774 56677766664

>PRK08328 hypothetical protein; Provisional

Probab=94.78  E-value=0.025  Score=54.56  Aligned_cols=119  Identities=19%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH-hcCCcccCCCCeeecCCccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK-SNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~-~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      +++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+       =++...|-+..- ....+...+.++ ...+.+.+...
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~~-~a~~~l~~~np   96 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKPL-SAKWKLERFNS   96 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHHH-HHHHHHHHhCC
Confidence            677899999999999999999999997666577753       222222221100 000000000000 00112333444


Q ss_pred             ceeeeccccCcccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPE-ADEILSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~e-A~~iL~~rGI~vi  345 (424)
                      |+-|-+ ....++++|+..+  ++.+|+++.-++.|.. ..+...++||.++
T Consensus        97 ~v~v~~-~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i  147 (231)
T PRK08328         97 DIKIET-FVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV  147 (231)
T ss_pred             CCEEEE-EeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence            555555 3334677776553  6678888765554332 2345678888765

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.75  E-value=0.11  Score=52.22  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=44.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|..|++..    +++.+.+++|++|+|.| .|.||..+|.+|.+.|+.|+ ++++
T Consensus       138 ~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~  190 (296)
T PRK14188        138 VPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS  190 (296)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence            47898888765    55578899999999999 99999999999999999987 6654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.66  E-value=0.4  Score=46.58  Aligned_cols=171  Identities=15%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEE--EEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKV--VAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakV--VaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      ++|.|+|+|++|+.+++.|.+.|..+  +.++|.+          .+.+.++.+..      ++.... ++.++. .+||
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~----------~~~~~~l~~~~------~~~~~~~~~~~~~-~~aD   63 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN----------AQIAARLAERF------PKVRIAKDNQAVV-DRSD   63 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCC----------HHHHHHHHHHc------CCceEeCCHHHHH-HhCC
Confidence            37999999999999999998887532  3355542          34444433322      122222 223443 4689


Q ss_pred             eeeeccccCcccccccccc---cceEEEecCCCCCCHH-HHHHHHh--CCceEeccccc-cccCcch--hhHHHhhh---
Q 014463          298 VLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPE-ADEILSK--KGVVILPDIYA-NSGGVTV--SYFEWVQN---  365 (424)
Q Consensus       298 IliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~e-A~~iL~~--rGI~viPD~la-NaGGVi~--s~~E~~qn---  365 (424)
                      +++-|.-...+. +-+..+   +-++|+.-+ .+++.+ ..+.+..  +-+.++|-.-. ...|++.  ...++++.   
T Consensus        64 vVilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~  141 (258)
T PRK06476         64 VVFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD  141 (258)
T ss_pred             EEEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence            999887643331 111111   224555544 455544 3444433  23455564222 2334433  11233332   


Q ss_pred             -ccccCC--CHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          366 -IQGFMW--EEEKVNHE-----LKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       366 -~~~~~w--~~e~v~~~-----l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                       +....|  +++..+.-     .-..+...+++..+.+++.|++..+|-.++.
T Consensus       142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        142 ALGTAVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             hcCCcEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence             222222  12222211     1122234556666777888998887765544

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.64  E-value=0.19  Score=50.55  Aligned_cols=93  Identities=20%  Similarity=0.199  Sum_probs=65.0

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..|++..    ++++|.+++|++++|+| ..-||.-++.+|.++|+.|. ++.++..       |+.   +     
T Consensus       138 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~T~-------~l~---~-----  197 (297)
T PRK14186        138 RSCTPAGVMRL----LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSRTQ-------DLA---S-----  197 (297)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H-----
Confidence            36888887655    56679999999999999 57799999999999999987 7765310       111   1     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                       +...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus       198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~-gavVIDvGin  232 (297)
T PRK14186        198 -----------------ITREADILVAAAGRPNLIGAEMVKP-GAVVVDVGIH  232 (297)
T ss_pred             -----------------HHhhCCEEEEccCCcCccCHHHcCC-CCEEEEeccc
Confidence                             2346888888774 66677776665 4433333334

>PRK08223 hypothetical protein; Validated

Probab=94.64  E-value=0.028  Score=56.21  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|+|.|.|-+|+.+++.|...|..=+.+.|.+
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            778999999999999999999999998666687764

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.63  E-value=0.2  Score=50.48  Aligned_cols=54  Identities=20%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.++|..||+..    +++.|.+++|++++|+| ...||.-++.+|.++++.|. ++.++
T Consensus       146 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~  200 (299)
T PLN02516        146 FLPCTPKGCLEL----LSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR  200 (299)
T ss_pred             CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence            357999997665    45679999999999999 57799999999999999987 77763

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.63  E-value=0.1  Score=52.09  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.|..||+..    +++.+.+++|++++|+|- |.||.-+|.+|.++|+.|+ ++.+
T Consensus       138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s  190 (284)
T PRK14179        138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS  190 (284)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence            47899988655    556799999999999998 9999999999999999987 6644

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=94.63  E-value=0.45  Score=48.58  Aligned_cols=32  Identities=28%  Similarity=0.568  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.++|.+.+ ....||||-|.
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~   35 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   35 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence            489999999999999998764 46999999874

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.62  E-value=0.26  Score=51.32  Aligned_cols=118  Identities=28%  Similarity=0.380  Sum_probs=71.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC---------CceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~---------G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      .|++|+|.|-||.-+|-.+..+|.+|+++ |.+         |..|=.+ .+.+++++-..+.|.+.      ..++-+.
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr------aTtd~~~   81 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR------ATTDPEE   81 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce------EecChhh
Confidence            79999999999999999999999999986 654         3333111 23444333333333332      1222233


Q ss_pred             cccccceeeeccccCccccc---------cc-ccc------cceEEEecCCCC-CCHHHHH-HHHhCCceEec-cc
Q 014463          292 LVHECDVLVPCALGGVLNKE---------NA-ADV------KAKFIIEAANHP-TDPEADE-ILSKKGVVILP-DI  348 (424)
Q Consensus       292 l~~~~DIliPaA~~~~It~~---------na-~~i------~akiIvEgAN~p-~t~eA~~-iL~~rGI~viP-D~  348 (424)
                      ++ +||++|=|- +.-++..         |+ +.|      ..=+|.|..=-| +|.+--+ +|+++.-+..| ||
T Consensus        82 l~-~~dv~iI~V-PTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df  155 (436)
T COG0677          82 LK-ECDVFIICV-PTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF  155 (436)
T ss_pred             cc-cCCEEEEEe-cCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence            44 999998773 3333322         11 111      556899999888 6777665 56664544443 54

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.62  E-value=0.19  Score=50.34  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=44.8

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|.+|++..    +++++.+++|++++|+| ...||.-++.+|.++++.|. ++.++
T Consensus       135 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~  188 (287)
T PRK14173        135 EPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK  188 (287)
T ss_pred             CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence            47899888765    55779999999999999 57899999999999999887 77653

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=94.60  E-value=0.42  Score=48.73  Aligned_cols=31  Identities=35%  Similarity=0.624  Sum_probs=27.1

Q ss_pred             eEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      ||+|-|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~   34 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL   34 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence            589999999999999998765   5899999874

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.56  E-value=0.099  Score=54.39  Aligned_cols=126  Identities=18%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC------cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN------DLLV  293 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~------~ll~  293 (424)
                      ++|.|.|.|.||+.+|..|.+.| .+|. |+|.+          .+++.+.....+.  .. .+..++-.      ++++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~   67 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGG--KV-EALQVDAADVDALVALIK   67 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh
Confidence            57999999999999999999998 7776 88874          3455554443221  10 01112211      2333


Q ss_pred             cccceeeeccccCccccccccc-ccce-EEEecCCCCC-CHHHHHHHHhCCceEeccccccccCcchhhHHHh
Q 014463          294 HECDVLVPCALGGVLNKENAAD-VKAK-FIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGVTVSYFEWV  363 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~-i~ak-iIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~  363 (424)
                       +.|+.|-|+.+. ++..-++. ++++ -.+.-+|..- .-+-++...+.||.++|+. --+-|++..+....
T Consensus        68 -~~d~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a  137 (389)
T COG1748          68 -DFDLVINAAPPF-VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYA  137 (389)
T ss_pred             -cCCEEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHH
Confidence             449999887644 23322211 2332 2455566543 3455678999999999985 45567777665443

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.56  E-value=0.099  Score=49.33  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3788999999999999999999999997544577865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.50  E-value=0.57  Score=46.52  Aligned_cols=130  Identities=15%  Similarity=0.091  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHHHhCC--CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          199 TGLGVFFATEALLAEHGK--SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      =+.|...+++.    .+.  +++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .++..++.++-+.
T Consensus       106 D~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~  171 (282)
T TIGR01809       106 DWDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQ  171 (282)
T ss_pred             CHHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhh
Confidence            36777777653    342  4789999999999999999999999998656688764          2333333332111


Q ss_pred             cccCCCCeeecC-Cccc--ccccceeeeccc-cCcccccccc---------cc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          277 LNDFQGGNAMDL-NDLL--VHECDVLVPCAL-GGVLNKENAA---------DV-KAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       277 v~~~~~~~~i~~-~~ll--~~~~DIliPaA~-~~~It~~na~---------~i-~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      ..   ....++. +++.  -.++|++|=|.- +..++.+...         ++ +..++.+..-+|....--+.-+++|.
T Consensus       172 ~~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~  248 (282)
T TIGR01809       172 VG---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGW  248 (282)
T ss_pred             cC---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCC
Confidence            00   0111111 2211  146899997753 3334433221         11 23577888877742223344556776


Q ss_pred             eEe
Q 014463          343 VIL  345 (424)
Q Consensus       343 ~vi  345 (424)
                      .++
T Consensus       249 ~~~  251 (282)
T TIGR01809       249 RVI  251 (282)
T ss_pred             EEE
Confidence            654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.49  E-value=0.45  Score=48.74  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITG  254 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G  254 (424)
                      .||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~   40 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI   40 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence            699999999999999998865 5799999998653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.49  E-value=0.12  Score=48.33  Aligned_cols=120  Identities=26%  Similarity=0.362  Sum_probs=56.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCc---------e-eCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA---------I-KNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND  290 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~---------i-~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~  290 (424)
                      ++|+|.|.|-||..+|-.|++.|.+|+++ |.+-.         . +.+.|  ++++++...+.+.+.-      .++.+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~   71 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE   71 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence            58999999999999999999999999964 65421         1 11222  3344433332222211      11111


Q ss_pred             ccccccceeeeccccCcccccccc----------cc------cceEEEecCCCC-CCH-HHHHHHHhCC-------ceEe
Q 014463          291 LLVHECDVLVPCALGGVLNKENAA----------DV------KAKFIIEAANHP-TDP-EADEILSKKG-------VVIL  345 (424)
Q Consensus       291 ll~~~~DIliPaA~~~~It~~na~----------~i------~akiIvEgAN~p-~t~-eA~~iL~~rG-------I~vi  345 (424)
                      ---.++|+++-|- +.-.++++..          .+      .+-+|.|..=.| +|. -...+|++.+       +.+.
T Consensus        72 ~ai~~adv~~I~V-pTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~  150 (185)
T PF03721_consen   72 EAIKDADVVFICV-PTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS  150 (185)
T ss_dssp             HHHHH-SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred             hhhhccceEEEec-CCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence            1124788888774 2222222211          11      344566665555 455 3456888655       7788


Q ss_pred             ccccc
Q 014463          346 PDIYA  350 (424)
Q Consensus       346 PD~la  350 (424)
                      |+++.
T Consensus       151 PErl~  155 (185)
T PF03721_consen  151 PERLR  155 (185)
T ss_dssp             -----
T ss_pred             CCccC
Confidence            99876

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.44  E-value=0.11  Score=50.53  Aligned_cols=36  Identities=17%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            678999999999999999999999997555587765

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.37  E-value=0.21  Score=49.28  Aligned_cols=106  Identities=21%  Similarity=0.280  Sum_probs=63.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|+|.+|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++ .+||++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v   62 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI   62 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence            579999999999999999999999886 55543          2233222221 1       1111 223443 479999


Q ss_pred             eeccccCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEec
Q 014463          300 VPCALGGVLNKE-------NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILP  346 (424)
Q Consensus       300 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viP  346 (424)
                      |-|.-...-.+.       ..+.+ .-++|+...+...  +.+..+.+.++|+.++.
T Consensus        63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d  119 (296)
T PRK11559         63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD  119 (296)
T ss_pred             EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            988653321111       12222 2367887665542  23455678888987643

>PRK07680 late competence protein ComER; Validated

Probab=94.35  E-value=0.11  Score=50.85  Aligned_cols=111  Identities=15%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~  296 (424)
                      ++|.|+|.|++|+.+++.|.+.|.   .-|.+.|.+          .+.+....++      +++.... ++.+++ .++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~a   63 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQS   63 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhC
Confidence            369999999999999999998884   224466653          2333333222      1222222 223333 579


Q ss_pred             ceeeeccccCccc---ccccccc-cceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          297 DVLVPCALGGVLN---KENAADV-KAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       297 DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                      |++|-|.-...+-   ++..+.+ +-++|+.-+|+-...+.++.+..+.+.++|-.
T Consensus        64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~  119 (273)
T PRK07680         64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI  119 (273)
T ss_pred             CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence            9999987443321   1122223 23688888876544445556666667888853

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.34  E-value=0.63  Score=50.41  Aligned_cols=130  Identities=19%  Similarity=0.254  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHHH------hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHH
Q 014463          198 ATGLGVFFATEALLAE------HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYK  271 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~  271 (424)
                      --+.|+..+++..+..      .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+          .++..+..
T Consensus       351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la  419 (529)
T PLN02520        351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELA  419 (529)
T ss_pred             ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHH
Confidence            3478888888764422      2456889999999999999999999999999876 77763          33443333


Q ss_pred             HhcCCcccCCCCeeecCC---cccccccceeeeccccCcc---ccccc--ccc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          272 KSNKSLNDFQGGNAMDLN---DLLVHECDVLVPCALGGVL---NKENA--ADV-KAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       272 ~~~g~v~~~~~~~~i~~~---~ll~~~~DIliPaA~~~~I---t~~na--~~i-~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      ++-+       ...++-+   +.+..++||+|-|..-+.-   +..-.  ..+ ...+|.+-.-+|..-.--+.-+++|.
T Consensus       420 ~~l~-------~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~  492 (529)
T PLN02520        420 DAVG-------GQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGA  492 (529)
T ss_pred             HHhC-------CceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCC
Confidence            3211       0111111   2233467899866532221   11101  112 34678888888753223334455666


Q ss_pred             eEe
Q 014463          343 VIL  345 (424)
Q Consensus       343 ~vi  345 (424)
                      .++
T Consensus       493 ~~~  495 (529)
T PLN02520        493 IIV  495 (529)
T ss_pred             eEe
Confidence            544

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.28  E-value=0.8  Score=47.67  Aligned_cols=121  Identities=15%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-----C---CCCee-ecCC-c
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-----F---QGGNA-MDLN-D  290 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-----~---~~~~~-i~~~-~  290 (424)
                      ++|+|+|.|.||..+|..|. .|..|+ +.|.+          .+++.+..+..-.+.+     +   ..... .+.+ +
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~   68 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN   68 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence            37999999999999997776 499988 55654          2222222211000000     0   01111 1111 1


Q ss_pred             ccccccceeeeccccCccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCceEecccccccc
Q 014463          291 LLVHECDVLVPCALGGVLNKE-------NA-------ADV--KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSG  353 (424)
Q Consensus       291 ll~~~~DIliPaA~~~~It~~-------na-------~~i--~akiIvEgAN~p-~t~eA~~iL~~rGI~viPD~laNaG  353 (424)
                      -...+||++|-|--.. ++.+       .+       ..+  ..-+|.+..=.| +|.+..+.+.++|+.+.|.++...-
T Consensus        69 ~~~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~  147 (388)
T PRK15057         69 EAYRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGK  147 (388)
T ss_pred             hhhcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCc
Confidence            1236899999885433 2211       11       111  334555666555 5666677788899999999886543


Q ss_pred             C
Q 014463          354 G  354 (424)
Q Consensus       354 G  354 (424)
                      -
T Consensus       148 a  148 (388)
T PRK15057        148 A  148 (388)
T ss_pred             c
Confidence            3

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.25  E-value=0.23  Score=51.07  Aligned_cols=85  Identities=15%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463          194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK  272 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~  272 (424)
                      +-.+.|..|++.    +|++.+.+++|++|+|+| ..-||.-++.+|.++++.|. ++.++-    +   |+.       
T Consensus       209 ~f~PCTp~avie----lL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~T----~---nl~-------  269 (364)
T PLN02616        209 LFVPCTPKGCIE----LLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSRT----K---NPE-------  269 (364)
T ss_pred             CCCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCCC----C---CHH-------
Confidence            345799999764    466679999999999999 57899999999999999987 776532    0   111       


Q ss_pred             hcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                        -+...+||+|-|.. .+.|+.+.++.
T Consensus       270 ------------------~~~r~ADIVIsAvGkp~~i~~d~vK~  295 (364)
T PLN02616        270 ------------------EITREADIIISAVGQPNMVRGSWIKP  295 (364)
T ss_pred             ------------------HHHhhCCEEEEcCCCcCcCCHHHcCC
Confidence                              11347888888874 56677666664

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.25  E-value=0.76  Score=46.32  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALL  268 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~  268 (424)
                      -|..-..--||-.-..+++.+.    . ...++|+|+|.|..|+..++.+.. ++.+-|.|.+.+          .+...
T Consensus       100 d~~~lT~~RTaa~sala~~~La----~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~  164 (314)
T PRK06141        100 DGTELTARRTAAASALAASYLA----R-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAE  164 (314)
T ss_pred             cCcchhcchhHHHHHHHHHHhC----C-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHH
Confidence            3333333344444444444432    2 356899999999999999986654 554444477653          34444


Q ss_pred             HHHHhcCCcccCCCCeeec-CCcccccccceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          269 KYKKSNKSLNDFQGGNAMD-LNDLLVHECDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       269 ~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                      ++.++-... ++ .....+ .++.+ .+|||++=|.-.  ..++.+.++. .+-+.+=|++.|...|.+..+.+++..|+
T Consensus       165 ~~a~~~~~~-g~-~~~~~~~~~~av-~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~v  240 (314)
T PRK06141        165 ALAAELRAQ-GF-DAEVVTDLEAAV-RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYV  240 (314)
T ss_pred             HHHHHHHhc-CC-ceEEeCCHHHHH-hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEE
Confidence            443331110 11 112222 12233 489999766542  2355554443 55677888888888888877777776665


Q ss_pred             cc
Q 014463          346 PD  347 (424)
Q Consensus       346 PD  347 (424)
                      =|
T Consensus       241 D~  242 (314)
T PRK06141        241 DT  242 (314)
T ss_pred             cC
Confidence            43

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.23  E-value=0.23  Score=49.63  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .++|..|++..    +++++.+++|++++|+| ...||.-++.+|.+++|.|. ++.+.-    +   |+.   +     
T Consensus       138 ~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~T----~---dl~---~-----  197 (282)
T PRK14180        138 ESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT----T---DLK---S-----  197 (282)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCCC----C---CHH---H-----
Confidence            46899888765    45678999999999999 57899999999999999987 776631    0   111   1     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                       +...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus       198 -----------------~~k~ADIvIsAvGkp~~i~~~~vk~-gavVIDvGin  232 (282)
T PRK14180        198 -----------------HTTKADILIVAVGKPNFITADMVKE-GAVVIDVGIN  232 (282)
T ss_pred             -----------------HhhhcCEEEEccCCcCcCCHHHcCC-CcEEEEeccc
Confidence                             1357888888875 66777766665 3434333433

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.22  E-value=0.21  Score=49.88  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+.|..|++..    ++++|.+++|++|+|.|- ..||.-++.+|.++++.|. ++.++.    +   |+.   +     
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T----~---~l~---~-----  196 (284)
T PRK14170        137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT----K---DLP---Q-----  196 (284)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---H-----
Confidence            47898887665    556799999999999995 6799999999999999987 776632    0   111   1     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                       ....+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus       197 -----------------~~~~ADIvI~AvG~~~~i~~~~vk~-GavVIDvGin  231 (284)
T PRK14170        197 -----------------VAKEADILVVATGLAKFVKKDYIKP-GAIVIDVGMD  231 (284)
T ss_pred             -----------------HHhhCCEEEEecCCcCccCHHHcCC-CCEEEEccCc
Confidence                             1346788888875 66777777765 4544444444

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.18  E-value=0.11  Score=51.40  Aligned_cols=85  Identities=18%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~  296 (424)
                      .||+|+|||++|+.+++.|...   +..+++|.|++.          +...+...   .      ...++ .++++..++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~---~------~~~~~~l~~ll~~~~   63 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAG---R------VALLDGLPGLLAWRP   63 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhc---c------CcccCCHHHHhhcCC
Confidence            6899999999999999988643   378998877742          22222111   1      11232 467788899


Q ss_pred             ceeeeccccCcccccccccc--cceEEEec
Q 014463          297 DVLVPCALGGVLNKENAADV--KAKFIIEA  324 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~i--~akiIvEg  324 (424)
                      |++++||....+.+--..-+  .+.+|+-.
T Consensus        64 DlVVE~A~~~av~e~~~~iL~~g~dlvv~S   93 (267)
T PRK13301         64 DLVVEAAGQQAIAEHAEGCLTAGLDMIICS   93 (267)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence            99999998877654433333  34555543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.17  E-value=0.12  Score=50.17  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678899999999999999999999997666677764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.10  E-value=0.2  Score=51.73  Aligned_cols=35  Identities=34%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+.+|+|.|+|.+|+.+++.+...|++|+ +.|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECC
Confidence            567899999999999999999999999866 66763

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=94.08  E-value=0.12  Score=52.83  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            788999999999999999999999998666688875

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.05  E-value=0.082  Score=53.22  Aligned_cols=103  Identities=20%  Similarity=0.286  Sum_probs=66.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      ..+.|++|.|.|+|++|+.+|+.|...|++|++. |.+.   .+.|..               .    ...+.++++ .+
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~-~r~~---~~~~~~---------------~----~~~~l~ell-~~  173 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY-TRSY---VNDGIS---------------S----IYMEPEDIM-KK  173 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCCC---cccCcc---------------c----ccCCHHHHH-hh
Confidence            3589999999999999999999999999999854 5431   111111               0    011234555 47


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGV  342 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI  342 (424)
                      ||+++-|.-     .+.|+.+....++ -.+++.-+=+++ ..+| .+.|+++-+
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i  228 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND  228 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence            899988764     3345555555543 347777777764 4444 467777645

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.98  E-value=1.1  Score=40.41  Aligned_cols=32  Identities=34%  Similarity=0.622  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  252 (424)
                      .+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            479999999999999998864 67999999884

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.97  E-value=0.55  Score=51.58  Aligned_cols=137  Identities=13%  Similarity=0.184  Sum_probs=80.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~  296 (424)
                      .+|+|.|||.+|+.+++.|.++|..++ +.|.          |.+.+.+..+. +.-.-|-+   .++.++|    -.++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~A  465 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGD---ATQLELLRAAGAEKA  465 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEee---CCCHHHHHhcCCccC
Confidence            589999999999999999999999998 6676          34555444332 21111111   1223333    2478


Q ss_pred             ceeeeccccCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce-EeccccccccCcchhhHHHhhh-cccc
Q 014463          297 DVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN-IQGF  369 (424)
Q Consensus       297 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn-~~~~  369 (424)
                      |++|-|.-....|.   ..+++.  +.++|+-.-    +++..+.|++.|+- ++|+-+-.+       .+.-+. +...
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~L~~l  534 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSA-------LELGRKTLVSL  534 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHHHHHc
Confidence            88776644332221   123332  567887543    46777899999985 557754332       222211 2234


Q ss_pred             CCCHHHHHHHHHHH
Q 014463          370 MWEEEKVNHELKRY  383 (424)
Q Consensus       370 ~w~~e~v~~~l~~~  383 (424)
                      ..+.+++.+.+++.
T Consensus       535 g~~~~~~~~~~~~~  548 (601)
T PRK03659        535 GMHPHQAQRAQQHF  548 (601)
T ss_pred             CCCHHHHHHHHHHH
Confidence            45667777666653

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=93.95  E-value=0.8  Score=48.72  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVV  247 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVV  247 (424)
                      |+|++|+|+|+|+.|+.-|.-|...|.+|+
T Consensus        34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            899999999999999988888888898887

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.94  E-value=1.7  Score=43.02  Aligned_cols=173  Identities=13%  Similarity=0.139  Sum_probs=94.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      ++|.++|.|++|+.+++-|.+.|.    .|+ ++|.+          .+.+....++.+       .+.. ++.++. .+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~   63 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS   63 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence            479999999999999999988874    344 55542          344444433222       1222 233343 48


Q ss_pred             cceeeeccccCcccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCceEeccccccccC-cchhhH--------
Q 014463          296 CDVLVPCALGGVLNK---ENAADVKA-KFIIEAANHPTDPEADEILSK--KGVVILPDIYANSGG-VTVSYF--------  360 (424)
Q Consensus       296 ~DIliPaA~~~~It~---~na~~i~a-kiIvEgAN~p~t~eA~~iL~~--rGI~viPD~laNaGG-Vi~s~~--------  360 (424)
                      |||+|-|--...+.+   +..+.++. ++|+.-+-+-....-.+.|..  +=+.++|-.-+-.|- ++.-|+        
T Consensus        64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~  143 (272)
T PRK12491         64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKD  143 (272)
T ss_pred             CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHH
Confidence            999998876543321   12222333 488888877665666666643  345788876554432 222111        


Q ss_pred             ----HHhhhc-cccCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014463          361 ----EWVQNI-QGFMWEEEKVNHELKR-------YMMSAFKDIKTMCQTHNCNLRMGAFTLGVN  412 (424)
Q Consensus       361 ----E~~qn~-~~~~w~~e~v~~~l~~-------~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~  412 (424)
                          +++.+. ....|-+|+-.+.+-.       ++...++.+.+.+.+.|++..+|-.+++..
T Consensus       144 ~~~v~~lf~~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t  207 (272)
T PRK12491        144 IKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA  207 (272)
T ss_pred             HHHHHHHHHcCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                222222 1123332332222111       234445566677778888877766655443

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=93.93  E-value=1.3  Score=44.01  Aligned_cols=115  Identities=21%  Similarity=0.237  Sum_probs=71.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      +++.++|+||+|+.++.-|.+.|    ..|+ |++.+          .+.+..+.++      |+.. ..++.+-+..++
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~a   63 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEA   63 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhC
Confidence            57999999999999999999998    3555 88874          3333334433      3221 123334556679


Q ss_pred             ceeeeccccCcccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCceEeccccccccC
Q 014463          297 DVLVPCALGGVLNKENAADV----KAKFIIEAANHPTDPEADEILS-KKGVVILPDIYANSGG  354 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~i----~akiIvEgAN~p~t~eA~~iL~-~rGI~viPD~laNaGG  354 (424)
                      |+++.|--+..+ ++...++    +-|+|+--|=+-....-.+.|- .+=+.++|-.-+-.|-
T Consensus        64 dvv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~  125 (266)
T COG0345          64 DVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA  125 (266)
T ss_pred             CEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence            999988654332 2223333    4567776665544455555664 3335788987665553

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=93.93  E-value=0.18  Score=47.76  Aligned_cols=139  Identities=20%  Similarity=0.199  Sum_probs=82.8

Q ss_pred             CchhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHH
Q 014463          196 EAATGLGVFFATEALL-----AEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK  269 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~-----~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~  269 (424)
                      .+.|.+||+..++..=     ...|.+++|++++|+| ...||.-++.+|.++||.|. ++|++|..+-..+-.      
T Consensus        33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~~------  105 (197)
T cd01079          33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGES------  105 (197)
T ss_pred             cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccccccccc------
Confidence            3689999987765420     0114589999999999 47799999999999999998 999887655222111      


Q ss_pred             HHHhcCCcccCCCCeeecC--Cccc--ccccceeeeccc-cCc-ccccccccccceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          270 YKKSNKSLNDFQGGNAMDL--NDLL--VHECDVLVPCAL-GGV-LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       270 ~~~~~g~v~~~~~~~~i~~--~~ll--~~~~DIliPaA~-~~~-It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                             ... . .....+  ..+.  ...+||+|-|.. .+. |+.+.++. .|-+|==|-|.-..   +.+ .++-=.
T Consensus       106 -------~~h-s-~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~-GavVIDVGi~~dvd---~~v-~~~as~  171 (197)
T cd01079         106 -------IRH-E-KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD-GAICINFASIKNFE---PSV-KEKASI  171 (197)
T ss_pred             -------ccc-c-cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC-CcEEEEcCCCcCcc---HhH-HhhcCE
Confidence                   100 0 000001  0122  357899998875 555 78777665 34444344443222   122 222224


Q ss_pred             EeccccccccCcchhh
Q 014463          344 ILPDIYANSGGVTVSY  359 (424)
Q Consensus       344 viPD~laNaGGVi~s~  359 (424)
                      +.|=    -|-++++.
T Consensus       172 iTPv----VGpvTva~  183 (197)
T cd01079         172 YVPS----IGKVTIAM  183 (197)
T ss_pred             eCCC----cCHHHHHH
Confidence            5662    66666554

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.86  E-value=0.26  Score=49.32  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+.|..|++..    +++.+.+++|++++|+| ..-||.-++.+|.++++.|. ++.++.       -|+.   +     
T Consensus       139 ~PcTp~av~~l----L~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T-------~~L~---~-----  198 (288)
T PRK14171        139 IPCTALGCLAV----IKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT-------HNLS---S-----  198 (288)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH---H-----
Confidence            46899886654    56679999999999999 47799999999999999987 887642       0111   1     


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                       +...+||+|-|.. .+.|+.+.++.
T Consensus       199 -----------------~~~~ADIvV~AvGkp~~i~~~~vk~  223 (288)
T PRK14171        199 -----------------ITSKADIVVAAIGSPLKLTAEYFNP  223 (288)
T ss_pred             -----------------HHhhCCEEEEccCCCCccCHHHcCC
Confidence                             1346788888764 56677776665

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.84  E-value=0.1  Score=52.70  Aligned_cols=107  Identities=18%  Similarity=0.252  Sum_probs=65.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      ..++|+||.|.|+|++|+.+|+.|...|++|+++ |.+..  ...|+               ..+..  ..+-++++ .+
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~--~~~~~---------------~~~~~--~~~l~e~l-~~  190 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRK--SWPGV---------------QSFAG--REELSAFL-SQ  190 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCC--CCCCc---------------eeecc--cccHHHHH-hc
Confidence            3588999999999999999999999999999865 33210  00011               11100  01112233 46


Q ss_pred             cceeeecccc-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463          296 CDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~  343 (424)
                      ||+++-|.-.     +.|+.+....++ -.+++.-+-+++ ..+|- +.|.+.-|.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~  246 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK  246 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence            8888877643     234444444443 358888888885 44443 567776664

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.81  E-value=0.085  Score=44.30  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|++|.|+|.|+||..-++.|.+.|++|.-|+..
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3589999999999999999999999999999866654

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.80  E-value=0.24  Score=49.57  Aligned_cols=108  Identities=26%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      .+|+++|+|++|+..|+.|.+.|..+. +.|.+          .++..+.....       ++...+...=...++||+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDvVi   62 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAA-------GATVAASPAEAAAEADVVI   62 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHc-------CCcccCCHHHHHHhCCEEE
Confidence            479999999999999999999999987 77764          34423322221       2222222122346889988


Q ss_pred             ecccc-----Ccccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEec
Q 014463          301 PCALG-----GVLNKEN--AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILP  346 (424)
Q Consensus       301 PaA~~-----~~It~~n--a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viP  346 (424)
                      -|-..     .++..++  +... +-+++++-... | .+.+..+.++++|+.++=
T Consensus        63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD  118 (286)
T COG2084          63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD  118 (286)
T ss_pred             EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe
Confidence            87532     2232211  1111 34566666554 4 356677889999998873

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=93.78  E-value=0.66  Score=48.47  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .+|+|.|||.+|+.+.+.|.+.   ...|++|-|.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~   95 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT   95 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence            5899999999999999999876   4689998774

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.75  E-value=0.29  Score=48.86  Aligned_cols=83  Identities=19%  Similarity=0.190  Sum_probs=61.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+.|..|++..    +++++.+++|++++|.| ...||.-++.+|.++++.|. ++.++.    +   |++         
T Consensus       137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~T----~---nl~---------  195 (282)
T PRK14182        137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSRT----A---DLA---------  195 (282)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---------
Confidence            46898887665    56678999999999999 57799999999999999877 776531    0   111         


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                     + +...+||+|-|+. .+.|+.+.++.
T Consensus       196 ---------------~-~~~~ADIvI~AvGk~~~i~~~~ik~  221 (282)
T PRK14182        196 ---------------G-EVGRADILVAAIGKAELVKGAWVKE  221 (282)
T ss_pred             ---------------H-HHhhCCEEEEecCCcCccCHHHcCC
Confidence                           0 2346889988874 56677776665

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.73  E-value=1.9  Score=42.36  Aligned_cols=100  Identities=12%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++|.|+|.|++|+.+++.|.+.|    .+|+ ++|.+-         .+.+..+.++.+       .+.. ++.++. 
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~---------~~~~~~l~~~~g-------~~~~~~~~e~~-   63 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNRSN---------ETRLQELHQKYG-------VKGTHNKKELL-   63 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECCCC---------HHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence            4579999999999999999999887    4544 555421         122333333211       1211 222332 


Q ss_pred             cccceeeeccccCccccc---cccccc-ceEEEecCCCCCCHH-HHHHH
Q 014463          294 HECDVLVPCALGGVLNKE---NAADVK-AKFIIEAANHPTDPE-ADEIL  337 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~---na~~i~-akiIvEgAN~p~t~e-A~~iL  337 (424)
                      .+|||+|-|--...+.+.   ..+.++ -++|+.-+++- +++ ..+.+
T Consensus        64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~~  111 (279)
T PRK07679         64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNLL  111 (279)
T ss_pred             hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHHc
Confidence            478999988655443221   112232 35888876654 444 44443

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.71  E-value=0.34  Score=48.72  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=64.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY  270 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~  270 (424)
                      .+.|..|++..    +++++.+++|++|+|+| ...||+-++.+|.++    ++.|. ++.++-.       |+      
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T~-------~l------  198 (297)
T PRK14167        137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRTD-------DL------  198 (297)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCCC-------CH------
Confidence            36898887665    56678999999999999 577999999999887    78776 7766320       11      


Q ss_pred             HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                         +-....+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus       199 -------------------~~~~~~ADIvIsAvGkp~~i~~~~ik~-gaiVIDvGin  235 (297)
T PRK14167        199 -------------------AAKTRRADIVVAAAGVPELIDGSMLSE-GATVIDVGIN  235 (297)
T ss_pred             -------------------HHHHhhCCEEEEccCCcCccCHHHcCC-CCEEEEcccc
Confidence                               112457899998874 66777776665 3433333434

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.65  E-value=0.11  Score=52.86  Aligned_cols=105  Identities=19%  Similarity=0.333  Sum_probs=66.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      ..+.|++|.|+|+|++|+.+|+.|...|.+|++. |.+.          +.....       ..+    .-+.++++ .+
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~~----------~~~~~~-------~~~----~~~l~ell-~~  198 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAYP----------NKDLDF-------LTY----KDSVKEAI-KD  198 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCCh----------hHhhhh-------hhc----cCCHHHHH-hc
Confidence            3589999999999999999999999999999854 5431          110000       001    01123333 47


Q ss_pred             cceeeeccccC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          296 CDVLVPCALGG-----VLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ||+++-|.-..     .|+++....++ -.+++..+=+++ ..+| .+.|.+.-|.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~  254 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL  254 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence            89988776432     34444444443 358888888885 4444 3677766664

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.65  E-value=0.2  Score=48.00  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            678899999999999999999999998666688764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.63  E-value=0.67  Score=47.47  Aligned_cols=32  Identities=34%  Similarity=0.549  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~   35 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDP   35 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhcCCeEEEEecCC
Confidence            489999999999999998764 46899999774

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=93.61  E-value=1.6  Score=43.09  Aligned_cols=165  Identities=15%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             EEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceeeecc
Q 014463          225 IQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLVPCA  303 (424)
Q Consensus       225 IqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIliPaA  303 (424)
                      |+|.|++|..+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... ++.++. .+||++|-|-
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v   60 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML   60 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence            46999999999999999999876 55653          2333333322 1       1111 222332 4789999886


Q ss_pred             ccCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceEeccccc-------------cccCcchhhH
Q 014463          304 LGGVLNK-------ENAADVK-AKFIIEAANHP--TDPEADEILSKKGVVILPDIYA-------------NSGGVTVSYF  360 (424)
Q Consensus       304 ~~~~It~-------~na~~i~-akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~la-------------NaGGVi~s~~  360 (424)
                      -.....+       .-.+.++ -++|+......  ++.+..+.+.++|+.++---+.             -.||--. .+
T Consensus        61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~-~~  139 (288)
T TIGR01692        61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAE-EF  139 (288)
T ss_pred             CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHH-HH
Confidence            5422211       1122332 35777766543  2345557788999987753221             1233221 22


Q ss_pred             HHhhh----cc----ccCC-CHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          361 EWVQN----IQ----GFMW-EEEKVNH----ELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       361 E~~qn----~~----~~~w-~~e~v~~----~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                      +.++.    +.    +... ...+..+    -+.......+.|.+..+++.|+++.+....+.
T Consensus       140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~  202 (288)
T TIGR01692       140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN  202 (288)
T ss_pred             HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            22221    11    1111 1222222    23333334577888899999999887665443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.59  E-value=0.11  Score=54.48  Aligned_cols=104  Identities=20%  Similarity=0.295  Sum_probs=65.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH  294 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~  294 (424)
                      ..|.|+||.|.|+|++|+.+|+.+...|.+|++ .|.+..                ...+      +.+.. +-++++ .
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~-~d~~~~----------------~~~~------~~~~~~~l~ell-~  202 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF-YDIEDK----------------LPLG------NARQVGSLEELL-A  202 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECCCcc----------------cccC------CceecCCHHHHH-h
Confidence            469999999999999999999999999999985 343210                0000      01111 224455 3


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      .||+++-+.-     .+.|+++....++ --+++--|=+++ +.+| .+.|++.-|.
T Consensus       203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  259 (409)
T PRK11790        203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA  259 (409)
T ss_pred             hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence            5788876652     2245555555553 357777777774 4444 3567766664

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.57  E-value=0.042  Score=53.20  Aligned_cols=36  Identities=33%  Similarity=0.613  Sum_probs=30.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|+|.|.|.||+++++.|...|..=+.+.|.+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            677899999999999999999999997444466654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.56  E-value=0.45  Score=47.91  Aligned_cols=111  Identities=18%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC------Ceeec-CCccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG------GNAMD-LNDLL  292 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~------~~~i~-~~~ll  292 (424)
                      .++|+|+|.|++|..++..|.+.|..|. +.+.+          .+.+....+.......+++      ....+ ..+.+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~----------~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~   72 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARR----------PEFAAALAAERENREYLPGVALPAELYPTADPEEAL   72 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence            4689999999999999999999999876 55543          2222222221111111111      11121 12222


Q ss_pred             ccccceeeeccccCccccccccccc-ceEEEecCCCCC-----CHHHHHHHHh---CCce
Q 014463          293 VHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-----DPEADEILSK---KGVV  343 (424)
Q Consensus       293 ~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-----t~eA~~iL~~---rGI~  343 (424)
                       .+||+++-|--...+ ++..+.++ -.+|+.-+|+-.     .....+.+.+   +++.
T Consensus        73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~  130 (328)
T PRK14618         73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA  130 (328)
T ss_pred             -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence             479999988665543 44434442 246777788521     2344456655   6654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.45  E-value=0.49  Score=51.04  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..+.+|+|.|+|.+|..+++.+...|++|+ +.|.+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~  196 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR  196 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            456899999999999999999999999976 66764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=93.43  E-value=0.95  Score=46.47  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus         3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~   35 (343)
T PRK07729          3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS   35 (343)
T ss_pred             eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence            4899999999999999987654 5899999774

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.42  E-value=0.12  Score=47.58  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA  255 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~  255 (424)
                      |++++|+|+|||+-|..-|..|.+.|.+|+ |....+.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s   38 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS   38 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence            578999999999999999999999999998 7776654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=93.41  E-value=0.86  Score=46.69  Aligned_cols=32  Identities=28%  Similarity=0.524  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.++|.+.+.   ..+||+|-|.
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~   36 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT   36 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence            4899999999999999987654   5899999774

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.32  E-value=0.28  Score=48.95  Aligned_cols=53  Identities=23%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++++.+++|++++|.|-+ .||.-++.+|.++++.|. ++.+.
T Consensus       137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~  190 (281)
T PRK14183        137 VPCTPLGVMEL----LEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF  190 (281)
T ss_pred             CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence            47898887554    6677999999999999976 899999999999999887 77663

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.32  E-value=0.44  Score=48.81  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=67.3

Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463          194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK  272 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~  272 (424)
                      +-.+.|..|++..    +++.+.+++|++++|+| ..-||.-++.+|.++++.|. ++.+.-    +   |+        
T Consensus       192 ~~~PCTp~avi~L----L~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~T----~---nl--------  251 (345)
T PLN02897        192 LFVSCTPKGCVEL----LIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAFT----K---DP--------  251 (345)
T ss_pred             CCcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCCC----C---CH--------
Confidence            3457999988766    45679999999999999 57799999999999999986 776531    0   11        


Q ss_pred             hcCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463          273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN  326 (424)
Q Consensus       273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN  326 (424)
                                       +-+...+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus       252 -----------------~~~~~~ADIvIsAvGkp~~v~~d~vk~-GavVIDVGin  288 (345)
T PLN02897        252 -----------------EQITRKADIVIAAAGIPNLVRGSWLKP-GAVVIDVGTT  288 (345)
T ss_pred             -----------------HHHHhhCCEEEEccCCcCccCHHHcCC-CCEEEEcccc
Confidence                             012457899998875 66777776665 4434433444

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=93.32  E-value=0.33  Score=47.86  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=58.4

Q ss_pred             CeEEEEe-cChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccccccccc
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~~~~D  297 (424)
                      .+|+|.| +|.+|+.+++.+.+ .+.++++++|....-.  .|-|..++...       ..+ +....++ +++ ..++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~-------~~~-gv~~~~d~~~l-~~~~D   70 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGI-------GKV-GVPVTDDLEAV-ETDPD   70 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCc-------CcC-CceeeCCHHHh-cCCCC
Confidence            4899999 79999999998875 6899999999532111  13344333211       011 1111222 334 45799


Q ss_pred             eeeeccccCccccccccc---ccceEEEecCCCCCCHH
Q 014463          298 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPE  332 (424)
Q Consensus       298 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~e  332 (424)
                      ++|-|... ..+.+++..   -+..+|+|=-  ..|++
T Consensus        71 vVIdfT~p-~~~~~~~~~al~~g~~vVigtt--g~~~e  105 (266)
T TIGR00036        71 VLIDFTTP-EGVLNHLKFALEHGVRLVVGTT--GFSEE  105 (266)
T ss_pred             EEEECCCh-HHHHHHHHHHHHCCCCEEEECC--CCCHH
Confidence            99999743 333444443   3567888765  35654

>PRK06153 hypothetical protein; Provisional

Probab=93.31  E-value=0.061  Score=55.86  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |++.+|+|.|.|-+|++++..|.+.|.+=+.+.|.+
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            678999999999999999999999997545477754

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=93.19  E-value=0.41  Score=47.72  Aligned_cols=165  Identities=18%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV  300 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli  300 (424)
                      +|.++|.|++|+.+++.|.+.|..|+ |.|.+     +   +.+++   .+ .+       .... ++.++. .+||++|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~~-~~advVi   60 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQVT-EASDIIF   60 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHHH-hcCCEEE
Confidence            69999999999999999999999876 66652     1   11222   21 11       2211 223333 4889999


Q ss_pred             eccccC-----cccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcch-------------
Q 014463          301 PCALGG-----VLNKEN--AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTV-------------  357 (424)
Q Consensus       301 PaA~~~-----~It~~n--a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~laNaGGVi~-------------  357 (424)
                      -|--..     ++..++  +..+ .-++|++-... | .+.+..+.+.++|+.++---  =+||...             
T Consensus        61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~~a~~g~l~~~~gG~  138 (292)
T PRK15059         61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEIGAREGTLSIMVGGD  138 (292)
T ss_pred             EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHhcCcEEEEEcCC
Confidence            875432     222111  1222 34677777654 3 34556678999999876422  2333321             


Q ss_pred             -hhHHHhhhc----cc-c-CCC---H----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          358 -SYFEWVQNI----QG-F-MWE---E----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       358 -s~~E~~qn~----~~-~-~w~---~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                       ..++.++.+    .. . +..   .    .-+++-+-......+.|.+..+++.|+++.+...++
T Consensus       139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l  204 (292)
T PRK15059        139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL  204 (292)
T ss_pred             HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence             112222110    00 0 000   0    112223333334567778888999999988776554

>PRK14852 hypothetical protein; Provisional

Probab=93.16  E-value=0.27  Score=56.57  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHH-HhcCCcccCCCCeeecCCcccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYK-KSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~-~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .|+..+|+|.|.|-||+.+++.|...|..=+.+.|-+-       ++...|.+.. .....+ +-++++ +-.+.+.+.+
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kae-vaa~~l~~IN  399 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLD-VMTERALSVN  399 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHH-HHHHHHHHHC
Confidence            48999999999999999999999999976666888642       1111111100 000001 000111 1112233444


Q ss_pred             cceeeeccccCcccccccccc--cceEEEecCCCCCCHHHH---HHHHhCCceEecc
Q 014463          296 CDVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPEAD---EILSKKGVVILPD  347 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~eA~---~iL~~rGI~viPD  347 (424)
                      .++=|-+- ...|+++|++.+  ++-+|+++..++.+....   ....++||.++--
T Consensus       400 P~v~I~~~-~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~a  455 (989)
T PRK14852        400 PFLDIRSF-PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITA  455 (989)
T ss_pred             CCCeEEEE-ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence            44444442 224688888875  788999999886543222   2347888877643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.15  E-value=0.19  Score=51.45  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|.|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            778999999999999999999999998555588865

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=93.10  E-value=0.3  Score=46.72  Aligned_cols=90  Identities=26%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++++|.|.||+|+.+++.|...|..|+ |..+++         .+++....+..+..     .+..++++- ...|||.+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~~-----i~~~~~~dA-~~~aDVVv   65 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGPL-----ITGGSNEDA-AALADVVV   65 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhccc-----cccCChHHH-HhcCCEEE
Confidence            578999999999999999999999998 776653         23443333322111     111122111 23588888


Q ss_pred             eccccCccccccc----ccccceEEEecCCC
Q 014463          301 PCALGGVLNKENA----ADVKAKFIIEAANH  327 (424)
Q Consensus       301 PaA~~~~It~~na----~~i~akiIvEgAN~  327 (424)
                      .+-- -.=..+.+    +.++=|+|+...|.
T Consensus        66 LAVP-~~a~~~v~~~l~~~~~~KIvID~tnp   95 (211)
T COG2085          66 LAVP-FEAIPDVLAELRDALGGKIVIDATNP   95 (211)
T ss_pred             Eecc-HHHHHhHHHHHHHHhCCeEEEecCCC
Confidence            7742 22122222    23446999999884

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.08  E-value=0.29  Score=48.83  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=45.1

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++.+.+++|++|+|.|.+ .||+.++.+|..+|+.|. +++++
T Consensus       132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~  185 (279)
T PRK14178        132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK  185 (279)
T ss_pred             CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence            46899888765    5567899999999999987 999999999999999987 66653

>PRK14851 hypothetical protein; Provisional

Probab=93.04  E-value=0.31  Score=54.37  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD  297 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D  297 (424)
                      |++.+|+|.|.|.||+++++.|...|..=+.+.|.+-  +++.-|+-+-+..    ...+ +-++++ +-.+.+.+.+.+
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~~----~~dv-G~~Kv~-v~~~~l~~inP~  112 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGAR----VPSF-GRPKLA-VMKEQALSINPF  112 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCcC----hhhC-CCHHHH-HHHHHHHHhCCC
Confidence            6789999999999999999999999975555778642  1111121110000    0001 111111 111223334444


Q ss_pred             eeeeccccCcccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCceEec
Q 014463          298 VLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP---EADEILSKKGVVILP  346 (424)
Q Consensus       298 IliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~---eA~~iL~~rGI~viP  346 (424)
                      +=|-+ ....|+++|+..+  ++.+|+++..++...   ...+...++||.++=
T Consensus       113 ~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~  165 (679)
T PRK14851        113 LEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVIT  165 (679)
T ss_pred             CeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            44433 3345677887764  788999998876322   122345678887764

>PLN02306 hydroxypyruvate reductase

Probab=92.99  E-value=0.14  Score=53.24  Aligned_cols=125  Identities=20%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-C---cccCC-CCeee-c
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-S---LNDFQ-GGNAM-D  287 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~---v~~~~-~~~~i-~  287 (424)
                      |.++.|+||.|.|+|++|+.+|++|. ..|++|++ .|....         .++.......+ .   ....+ ..+.. +
T Consensus       160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~-~d~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  229 (386)
T PLN02306        160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQS---------TRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCCc---------hhhhhhhhhhcccccccccccccccccCC
Confidence            34589999999999999999999985 78999984 454310         00100000000 0   00000 00111 2


Q ss_pred             CCcccccccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463          288 LNDLLVHECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       288 ~~~ll~~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la  350 (424)
                      -++++ ..|||++-+.-     .+.|+++....++ -.+++.-|=+++ ..+| -+.|++.-|. ..=|.+.
T Consensus       230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~  300 (386)
T PLN02306        230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE  300 (386)
T ss_pred             HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence            24444 36899988653     3345655555554 458888888885 4444 3677776564 3334443

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.98  E-value=0.54  Score=47.19  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=60.1

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY  270 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~  270 (424)
                      .++|..||+..    +++.+.+++|++|+|+| ..-||.-++.+|.++    ++.|. ++.++..       |+.   + 
T Consensus       137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T~-------nl~---~-  200 (293)
T PRK14185        137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSRSK-------NLK---K-  200 (293)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCCCC-------CHH---H-
Confidence            47899888665    55678999999999999 577999999999988    57876 7766420       111   1 


Q ss_pred             HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                           +...+||+|-|.. .+.|+.+.++.
T Consensus       201 ---------------------~~~~ADIvIsAvGkp~~i~~~~vk~  225 (293)
T PRK14185        201 ---------------------ECLEADIIIAALGQPEFVKADMVKE  225 (293)
T ss_pred             ---------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence                                 1246888887774 66677666654

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=92.94  E-value=0.23  Score=50.09  Aligned_cols=79  Identities=22%  Similarity=0.409  Sum_probs=54.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD  297 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D  297 (424)
                      +.|+-++|-|||+||...|..|.-.|++|+ |++.+-         +.+|.+..+      +|   +..+-+|.. .++|
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiDP---------I~ALQAaMe------G~---~V~tm~ea~-~e~d  271 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEIDP---------ICALQAAME------GY---EVTTLEEAI-REVD  271 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccCc---------hHHHHHHhh------cc---EeeeHHHhh-hcCC
Confidence            788889999999999999999999999998 888752         455554332      22   333333332 4678


Q ss_pred             eeeeccc-cCcccccccccc
Q 014463          298 VLVPCAL-GGVLNKENAADV  316 (424)
Q Consensus       298 IliPaA~-~~~It~~na~~i  316 (424)
                      ||+-+.. .+.|+.+--++.
T Consensus       272 ifVTtTGc~dii~~~H~~~m  291 (434)
T KOG1370|consen  272 IFVTTTGCKDIITGEHFDQM  291 (434)
T ss_pred             EEEEccCCcchhhHHHHHhC
Confidence            8887764 566666644443

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=92.81  E-value=0.22  Score=48.16  Aligned_cols=74  Identities=22%  Similarity=0.300  Sum_probs=51.2

Q ss_pred             CeEEEEecChHHHHHHHHHHH--CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      ++|.|+|+|..|..+.+++.+  ..++.++|.|++          .++..+..+..+      .....+-++++ .+.|+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~~~------~~~~s~ide~~-~~~Dl   63 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEASVG------RRCVSDIDELI-AEVDL   63 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhhcC------CCccccHHHHh-hccce
Confidence            478999999999999999864  358999999985          344444333211      11122335666 89999


Q ss_pred             eeeccccCccccc
Q 014463          299 LVPCALGGVLNKE  311 (424)
Q Consensus       299 liPaA~~~~It~~  311 (424)
                      ++.||....+-+-
T Consensus        64 vVEaAS~~Av~e~   76 (255)
T COG1712          64 VVEAASPEAVREY   76 (255)
T ss_pred             eeeeCCHHHHHHH
Confidence            9999988766443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=92.77  E-value=0.77  Score=46.10  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ...++++|.|.|..|+..++.+.. .+.+-|.|.|.+          .+...++.++-+.. ++ ....-+.++.+ .++
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a  189 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV  189 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence            466899999999999999998864 676666677764          34444444432211 11 11111223344 499


Q ss_pred             ceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCC
Q 014463          297 DVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG  341 (424)
Q Consensus       297 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rG  341 (424)
                      ||+|=|.-.  ..++..  -+-.+-+++=|++.|-..|.+..+-.+-
T Consensus       190 DiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a  234 (304)
T PRK07340        190 DLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGS  234 (304)
T ss_pred             CEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhC
Confidence            999988753  345542  2346779999999997777665344343

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=92.62  E-value=0.18  Score=51.30  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      |+|+||+|+|+|++|+..|+.|...|.+|+..
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~   45 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG   45 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence            89999999999999999999999999999843

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=92.54  E-value=0.49  Score=48.36  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      .||+|.|||.+|+.+++.+.+ .+.++++|+|++
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~   35 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK   35 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            489999999999999998864 579999999964

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.47  E-value=0.098  Score=48.49  Aligned_cols=31  Identities=32%  Similarity=0.455  Sum_probs=26.2

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+|.|.|.+|+.+|..+...|.+|+ +.|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEE-EE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEE-EEECC
Confidence            68999999999999999999999998 66663

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.46  E-value=0.29  Score=47.03  Aligned_cols=114  Identities=27%  Similarity=0.379  Sum_probs=62.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc---ccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll---~~~~D  297 (424)
                      ++|+|.|.|.||+.+|+.|.+.|..|+.| |.+          .+.+.++....-....+- +...+.+.|.   -.++|
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~-gd~t~~~~L~~agi~~aD   68 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVI-GDATDEDVLEEAGIDDAD   68 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEE-ecCCCHHHHHhcCCCcCC
Confidence            58999999999999999999999999955 542          334443222111110000 0001111222   34789


Q ss_pred             eeeeccccCccccc---cc-ccccceEEEecCCCCCCHHHHHHHHhCC--ceEecccc
Q 014463          298 VLVPCALGGVLNKE---NA-ADVKAKFIIEAANHPTDPEADEILSKKG--VVILPDIY  349 (424)
Q Consensus       298 IliPaA~~~~It~~---na-~~i~akiIvEgAN~p~t~eA~~iL~~rG--I~viPD~l  349 (424)
                      +++=+...+.+|--   .+ +.+..+-|+-=+   .+++-.++|.+-|  ..+.|...
T Consensus        69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~---~~~~~~~~~~~~g~~~ii~Pe~~  123 (225)
T COG0569          69 AVVAATGNDEVNSVLALLALKEFGVPRVIARA---RNPEHEKVLEKLGADVIISPEKL  123 (225)
T ss_pred             EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe---cCHHHHHHHHHcCCcEEECHHHH
Confidence            99988665544321   12 223332222111   3466678888888  34555544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.43  E-value=0.18  Score=45.77  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++|++|.|.|.|.||...++.|.+.|++|+-|
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI   42 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV   42 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            5689999999999999999999999999999844

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=92.38  E-value=1.5  Score=45.07  Aligned_cols=32  Identities=34%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus         3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~   35 (342)
T PTZ00353          3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA   35 (342)
T ss_pred             eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence            5899999999999999987654 6899999873

>PRK07877 hypothetical protein; Provisional

Probab=92.37  E-value=0.29  Score=54.85  Aligned_cols=125  Identities=12%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      |+..+|+|.|.| +|+++|.+|...|.  +++ +.|.+-       +++.-|.+.......+ +-++++ .-.+.+.+.+
T Consensus       105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~-------ve~sNLnRq~~~~~di-G~~Kv~-~a~~~l~~in  173 (722)
T PRK07877        105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDT-------LELSNLNRVPAGVFDL-GVNKAV-VAARRIAELD  173 (722)
T ss_pred             HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCE-------EcccccccccCChhhc-ccHHHH-HHHHHHHHHC
Confidence            788999999999 99999999999994  555 777642       2222222110000001 001111 1112233444


Q ss_pred             cceeeeccccCcccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCceEeccccccccCcc
Q 014463          296 CDVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP-EADEILSKKGVVILPDIYANSGGVT  356 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~-eA~~iL~~rGI~viPD~laNaGGVi  356 (424)
                      .+|=|-+ +..-||++|++.+  ++.+|+++.-+.-+. ...+.-.++||.+|=..  .++|.+
T Consensus       174 p~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~--~~~g~~  234 (722)
T PRK07877        174 PYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT--SDRGLL  234 (722)
T ss_pred             CCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCc
Confidence            4444433 3345678888875  788888888775332 22345568898887443  344554

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.33  E-value=0.19  Score=45.81  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=28.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +...+|+|.|.|+||..+++.+...|++++ +.|.
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~   51 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE   51 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence            566899999999999999999999999998 5554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.30  E-value=0.37  Score=48.14  Aligned_cols=52  Identities=19%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.|..|++..    +++++.+++|++++|.| ..-||+-++.+|.++++.|. ++++
T Consensus       138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs  190 (284)
T PRK14190        138 LPCTPHGILEL----LKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS  190 (284)
T ss_pred             CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence            36888887655    56779999999999999 58899999999999999987 6765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=92.13  E-value=0.21  Score=50.93  Aligned_cols=34  Identities=35%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++|+|+|+|++|+..|+.|.+.|.+|+ +.+.
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv-v~~r   48 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVV-VGLR   48 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEE-EEEC
Confidence            889999999999999999999999999987 4443

>PLN02688 pyrroline-5-carboxylate reductase

Probab=92.03  E-value=0.65  Score=45.04  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEE-cC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVS-DI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVs-D~  252 (424)
                      +||.++|+|++|+.+++.|.+.|.    +|+ ++ |.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r   36 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS   36 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence            479999999999999999999887    666 44 54

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=92.01  E-value=0.42  Score=48.32  Aligned_cols=35  Identities=29%  Similarity=0.598  Sum_probs=30.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++.=|+|.|.|.||+|++.+|.+.|.+=+-|.|-
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf  106 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF  106 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence            78889999999999999999999999765557664

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=91.94  E-value=0.48  Score=46.61  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccccccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DI  298 (424)
                      +||+|.|+|++|+..++.|.+. +..+++|++....        ..+..+....        +....+ .+++ ..++|+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~--------~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv   64 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS--------IDAVRRALGE--------AVRVVSSVDAL-PQRPDL   64 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC--------HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence            4899999999999999988764 6888888864321        1111111100        112222 2445 677999


Q ss_pred             eeeccccCccccccccc-c--cceEEEecCCCCCCH----HHHHHHHhCCceEe
Q 014463          299 LVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDP----EADEILSKKGVVIL  345 (424)
Q Consensus       299 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~----eA~~iL~~rGI~vi  345 (424)
                      ++.|+..... .+.+.. +  +..++++-.=....+    +..+..++.|..+.
T Consensus        65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~  117 (265)
T PRK13303         65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH  117 (265)
T ss_pred             EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence            9999876533 344433 2  456777521101122    23345667786543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.92  E-value=4.7  Score=40.27  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      +.|...+++    ..+.+++++++.|.|.|..++.++-.|...|++-|.|.+.+-.       ..++..++.++-+.  .
T Consensus       108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~--~  174 (288)
T PRK12749        108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE--N  174 (288)
T ss_pred             HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--c
Confidence            677777665    4577889999999999999999999898899866668887421       11232332221110  0


Q ss_pred             CCC-CeeecCCc---cc--ccccceeeeccccCc---cccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463          280 FQG-GNAMDLND---LL--VHECDVLVPCALGGV---LNKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP  346 (424)
Q Consensus       280 ~~~-~~~i~~~~---ll--~~~~DIliPaA~~~~---It~~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP  346 (424)
                      ++. ....+.++   +.  -.++|++|-|.--+.   .+..   ....+ ...+|.+-.-+|..-.--+.-+++|..+++
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~  254 (288)
T PRK12749        175 TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTID  254 (288)
T ss_pred             cCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEEC
Confidence            100 01111111   11  136899997753222   1110   11112 235777888887533334455677776554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=91.90  E-value=4.3  Score=40.65  Aligned_cols=130  Identities=19%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      |.|+..++++.  ..+.+.+|++++|.|.|-.++.++..|.+.|++=|.|.+.+-.       -.++|.+...+.+.   
T Consensus       108 ~~G~~~~L~~~--~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~-------ra~~La~~~~~~~~---  175 (283)
T COG0169         108 GIGFLRALKEF--GLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRE-------RAEELADLFGELGA---  175 (283)
T ss_pred             HHHHHHHHHhc--CCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHH-------HHHHHHHHhhhccc---
Confidence            67766664432  1124578999999999999999999999999643338776421       11233333332221   


Q ss_pred             CCCCeeecCCccccc-ccceeeeccccCcccc-----cccccc-cceEEEecCCCCC-CHHHHHHHHhCCceE
Q 014463          280 FQGGNAMDLNDLLVH-ECDVLVPCALGGVLNK-----ENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVI  344 (424)
Q Consensus       280 ~~~~~~i~~~~ll~~-~~DIliPaA~~~~It~-----~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~v  344 (424)
                      +...  ....++-.. +.|++|=|.--+.-..     -+...+ +..++.+-.-+|. || --+.-+++|..+
T Consensus       176 ~~~~--~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-lL~~A~~~G~~~  245 (283)
T COG0169         176 AVEA--AALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-LLREARAQGAKT  245 (283)
T ss_pred             cccc--ccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-HHHHHHHcCCeE
Confidence            1001  111122222 7999997753221111     112222 6678889998885 55 334566777663

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=91.89  E-value=0.46  Score=47.93  Aligned_cols=108  Identities=19%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh-cC
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS-NK  275 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~-~g  275 (424)
                      +||.-.++++.    +.|..=.|.+|+|.+ .|.||+.+.++-.-+|++||+++-+.-           + .++..+ -|
T Consensus       133 mpG~TAY~gLl----~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~e-----------K-~~~l~~~lG  196 (340)
T COG2130         133 MPGLTAYFGLL----DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAE-----------K-CDFLTEELG  196 (340)
T ss_pred             CchHHHHHHHH----HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHH-----------H-HHHHHHhcC
Confidence            55555455533    456666799999999 499999988887789999999987731           1 122222 11


Q ss_pred             --CcccCCCCeeecCCcccc----cccceeeeccccCccccccccc--ccceEEEecC
Q 014463          276 --SLNDFQGGNAMDLNDLLV----HECDVLVPCALGGVLNKENAAD--VKAKFIIEAA  325 (424)
Q Consensus       276 --~v~~~~~~~~i~~~~ll~----~~~DIliPaA~~~~It~~na~~--i~akiIvEgA  325 (424)
                        ...+|...   +-.+-|.    --.||++.+-.+.+.+ .-...  .+||+++.|+
T Consensus       197 fD~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~D-Av~~~ln~~aRi~~CG~  250 (340)
T COG2130         197 FDAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLD-AVLPLLNLFARIPVCGA  250 (340)
T ss_pred             CceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHH-HHHHhhccccceeeeee
Confidence              11122111   1111221    2469999996555443 33333  5899999997

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.76  E-value=0.44  Score=48.94  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            678899999999999999999999997666688865

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.69  E-value=0.27  Score=46.56  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|++|.|+|.|.||...++.|.+.|++|+-|+
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs   40 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS   40 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence            46899999999999999999999999999988443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.67  E-value=0.46  Score=48.65  Aligned_cols=41  Identities=22%  Similarity=0.384  Sum_probs=33.6

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++.+.. .|.+|+|.|+|-+|..++++....|++|++++-+
T Consensus       159 lk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~  199 (339)
T COG1064         159 LKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS  199 (339)
T ss_pred             hhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence            4443432 5889999999999999999999999999987544

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.63  E-value=5.3  Score=41.61  Aligned_cols=32  Identities=38%  Similarity=0.538  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.+.|.+|++ .|.+
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~~   32 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDID   32 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEE-EECC
Confidence            3799999999999999999999999884 5653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.55  E-value=2.9  Score=42.03  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++|+|.|.|.+|+..|..|.+.|..|+. .|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~-~~r   33 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTL-IGR   33 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEE-Eec
Confidence            5799999999999999999999998874 444

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=91.53  E-value=0.45  Score=49.27  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678899999999999999999999997555588865

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=91.52  E-value=2.9  Score=42.82  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .+|+|.|||.+|+.+.+.+.+. ..+++++-|.
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~   35 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP   35 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5899999999999999998754 5899988774

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=91.50  E-value=1.8  Score=45.77  Aligned_cols=32  Identities=38%  Similarity=0.584  Sum_probs=27.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.+.|.+.+.   ...||+|-|.
T Consensus        76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~  110 (442)
T PLN02237         76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS  110 (442)
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence            6899999999999999987643   5899999774

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=91.33  E-value=0.33  Score=49.64  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=29.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ...+|+|+||||.|+..|+.|.++|..++ .+|..
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsRs   84 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRS   84 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcc
Confidence            34689999999999999999999999998 56653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.31  E-value=0.55  Score=44.89  Aligned_cols=49  Identities=22%  Similarity=0.263  Sum_probs=40.2

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .+++|++|+|.|.|.||..=+++|.+.|++|+-+++.-          .+++..+.++.
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~   56 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEG   56 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhc
Confidence            46899999999999999999999999999999888763          24555555544

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=91.28  E-value=3.4  Score=44.14  Aligned_cols=37  Identities=27%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-----CCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~~G  254 (424)
                      .+.++|+|-|||-+|+.++|.+.+.     +.+||||-+..+
T Consensus       125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n  166 (477)
T PRK08289        125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG  166 (477)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence            5678999999999999999998764     589999977544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.28  E-value=0.28  Score=46.54  Aligned_cols=35  Identities=14%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|++|.|.|.|.||..-++.|.+.|++|+-|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA   39 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence            35889999999999999999999999999988443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=91.23  E-value=0.35  Score=48.93  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+|++|+|+|+|++|+.+|+.|.+.|.+|+...+.
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~   35 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK   35 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence            57899999999999999999999999887633343

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06046 alanine dehydrogenase; Validated

Probab=91.22  E-value=1.3  Score=44.92  Aligned_cols=115  Identities=19%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~  296 (424)
                      .-++++|.|.|..|++.++.|. ..+.+.|.|.|.+          .+...++.++-..-.++ .....+ .+++++  +
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a  194 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C  194 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence            3468999999999999998886 4678889888874          23333333221100010 011122 245554  9


Q ss_pred             ceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          297 DVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       297 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                      ||++=|.-.  -.+..+..+. .+-+..=|++-|-..|.+..+-++.-+|+ |.
T Consensus       195 DiVv~aTps~~P~~~~~~l~~-g~hV~~iGs~~p~~~El~~~~~~~a~vvv-D~  246 (326)
T PRK06046        195 DILVTTTPSRKPVVKAEWIKE-GTHINAIGADAPGKQELDPEILLRAKVVV-DD  246 (326)
T ss_pred             CEEEEecCCCCcEecHHHcCC-CCEEEecCCCCCccccCCHHHHhCCcEEE-CC
Confidence            999977542  2344444433 66788889999866666654444553333 54

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=91.22  E-value=0.71  Score=46.59  Aligned_cols=115  Identities=21%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-CCCCeeecCCcccc---
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-FQGGNAMDLNDLLV---  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-~~~~~~i~~~~ll~---  293 (424)
                      +..+|+|+|.|++|...+..+. ..+.++++++|.+.     +   . +-++..++.| +.. |.     +-+++++   
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s-~gla~A~~~G-i~~~~~-----~ie~LL~~~~   67 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---S-DGLARARRLG-VATSAE-----GIDGLLAMPE   67 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---h-HHHHHHHHcC-CCcccC-----CHHHHHhCcC
Confidence            4578999999999998666554 46799999998742     1   1 1222233322 211 11     1144554   


Q ss_pred             -cccceeeeccccCcccccccccc---cceEEEec--CCCCC-CHH--HHHHHH--hCCceEecccc
Q 014463          294 -HECDVLVPCALGGVLNKENAADV---KAKFIIEA--ANHPT-DPE--ADEILS--KKGVVILPDIY  349 (424)
Q Consensus       294 -~~~DIliPaA~~~~It~~na~~i---~akiIvEg--AN~p~-t~e--A~~iL~--~rGI~viPD~l  349 (424)
                       .++|+.+-|. ++..+.+++.+.   ++.+|.+-  +++|+ -|+  .++.+.  ..++...|.-.
T Consensus        68 ~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~a  133 (302)
T PRK08300         68 FDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQA  133 (302)
T ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHH
Confidence             4689988886 445666666553   55566553  34552 232  234444  34666555533

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=91.14  E-value=0.44  Score=55.48  Aligned_cols=114  Identities=17%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCE------------EEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC--
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH-GGK------------VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG--  283 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~-Gak------------VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~--  283 (424)
                      +.++|+|.|.|.||+..++.|.+. ++.            +|+|+|.+          .+...+..++      +++.  
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~  631 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA  631 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence            467999999999999999999864 333            57788874          3344333332      2221  


Q ss_pred             ee--e-cCCcccc--cccceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          284 NA--M-DLNDLLV--HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       284 ~~--i-~~~~ll~--~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                      ..  + +.+++..  .++|+.|=|. +...+.+.|..   -+.-+++|.-..+-+.+.++..+++|+.++|++-
T Consensus       632 v~lDv~D~e~L~~~v~~~DaVIsal-P~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G  704 (1042)
T PLN02819        632 VQLDVSDSESLLKYVSQVDVVISLL-PASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG  704 (1042)
T ss_pred             EEeecCCHHHHHHhhcCCCEEEECC-CchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence            11  2 2245554  4799988774 34455554443   3556777762222222334567788999888765

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.07  E-value=0.77  Score=45.94  Aligned_cols=53  Identities=13%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH--CCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE--HGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakVVaVsD~~  253 (424)
                      .++|..|++..    +++++.+++|++++|+| ...||.-++.+|.+  +++.|. ++.++
T Consensus       138 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~  193 (284)
T PRK14193        138 LPCTPRGIVHL----LRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG  193 (284)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence            47899988766    45679999999999999 57899999999988  788876 77763

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=90.95  E-value=0.76  Score=53.13  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..|++|+|+|.|..|..+|..|..+|++|+ |.|.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~  414 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG  414 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence            578999999999999999999999999998 6664

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.86  E-value=1.2  Score=49.22  Aligned_cols=111  Identities=21%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc----cc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV----HE  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~----~~  295 (424)
                      ..+|.|.|||.+|+.+++.|.+.|.+++ +.|.          |.+.+.+.++. |.-.-|-+   .+..++|+    .+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~  464 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLRKF-GMKVFYGD---ATRMDLLESAGAAK  464 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhc-CCeEEEEe---CCCHHHHHhcCCCc
Confidence            3689999999999999999999999988 5576          34555444432 21111111   12233442    36


Q ss_pred             cceeeeccccCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCceEe-cccc
Q 014463          296 CDVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVVIL-PDIY  349 (424)
Q Consensus       296 ~DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~vi-PD~l  349 (424)
                      +|.+|-|.-....|.   .++++.  +.++|+=.    .+++..+.|++.|+-.+ |...
T Consensus       465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa----~d~~~~~~L~~~Gad~v~~e~~  520 (621)
T PRK03562        465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARA----RDVDHYIRLRQAGVEKPERETF  520 (621)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEE----CCHHHHHHHHHCCCCEEehhhH
Confidence            788777753333222   223332  45677744    34566678999998644 5443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=90.75  E-value=0.53  Score=48.59  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            788999999999999999999999998656577865

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.71  E-value=0.89  Score=38.08  Aligned_cols=102  Identities=25%  Similarity=0.343  Sum_probs=57.2

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccccce
Q 014463          223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHECDV  298 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~DI  298 (424)
                      |+|.|+|.+|+.+++.|.+.+.+|+ +.|.+          .+...+..++.  +.-+. +.. ++.+.|    -.++|.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d----------~~~~~~~~~~~--~~~i~-gd~-~~~~~l~~a~i~~a~~   65 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD----------PERVEELREEG--VEVIY-GDA-TDPEVLERAGIEKADA   65 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEE-EEESS----------HHHHHHHHHTT--SEEEE-S-T-TSHHHHHHTTGGCESE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC----------cHHHHHHHhcc--ccccc-ccc-hhhhHHhhcCccccCE
Confidence            6799999999999999999777888 55552          34444444432  11110 111 112222    246777


Q ss_pred             eeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          299 LVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       299 liPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      ++-+.-....|   ...++++  ..++|+..-    +++..+.|++-|+-
T Consensus        66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d  111 (116)
T PF02254_consen   66 VVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGAD  111 (116)
T ss_dssp             EEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-S
T ss_pred             EEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcC
Confidence            77665433222   2233332  467887653    46667888888874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=90.68  E-value=0.78  Score=46.90  Aligned_cols=100  Identities=22%  Similarity=0.309  Sum_probs=57.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |.++.|+||.|.|+|..|+.+|+.|...|..|. -+.....       -.+...++-           ++.++-++++ .
T Consensus       157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~~~-------~~~~~~~~~-----------~~~~d~~~~~-~  216 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRTQL-------PPEEAYEYY-----------AEFVDIEELL-A  216 (336)
T ss_pred             cccccCCEEEEecCcHHHHHHHHhhhhccceee-eecccCC-------chhhHHHhc-----------ccccCHHHHH-h
Confidence            456999999999999999999999999994443 3333221       111111111           1122333333 5


Q ss_pred             ccceeeecccc-----Ccccccccccc-cceEEEecCCCCC-CHHHH
Q 014463          295 ECDVLVPCALG-----GVLNKENAADV-KAKFIIEAANHPT-DPEAD  334 (424)
Q Consensus       295 ~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p~-t~eA~  334 (424)
                      ++|+++-|---     +.||.+-.... +.-+||..|=+++ ..++.
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l  263 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEAL  263 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHH
Confidence            77888876522     23333333333 3347777777774 55444

>PRK08605 D-lactate dehydrogenase; Validated

Probab=90.66  E-value=0.34  Score=49.29  Aligned_cols=106  Identities=20%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHH-HHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL  292 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll  292 (424)
                      +.++.|++|.|.|+|++|+.+|+.| ...|.+|++ .|.+..         ...    ..  .+      +.. +.++++
T Consensus       141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~----~~--~~------~~~~~l~ell  198 (332)
T PRK08605        141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDPFPN---------AKA----AT--YV------DYKDTIEEAV  198 (332)
T ss_pred             cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCcc---------HhH----Hh--hc------cccCCHHHHH
Confidence            3458999999999999999999999 557889884 444320         000    00  01      111 224444


Q ss_pred             ccccceeeeccccCc-----cccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q 014463          293 VHECDVLVPCALGGV-----LNKENAADVK-AKFIIEAANHPT-DP-EADEILSKKGVV  343 (424)
Q Consensus       293 ~~~~DIliPaA~~~~-----It~~na~~i~-akiIvEgAN~p~-t~-eA~~iL~~rGI~  343 (424)
                       .+||+++-|.-...     ++.+....++ -.+++.-+-+.. +. +..+.|.+..|.
T Consensus       199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~  256 (332)
T PRK08605        199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK  256 (332)
T ss_pred             -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence             47899998864433     3333333332 348888888874 33 334667766663

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=90.59  E-value=0.36  Score=41.48  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             eEEEEe-cChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          222 KFAIQG-FGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqG-fGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      ||+|.| .|.+|+.++++|.++ ...++.+..++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~   34 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS   34 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec
Confidence            689999 999999999999874 57888877765

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=90.49  E-value=0.53  Score=44.40  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCCC
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDITG  254 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~G  254 (424)
                      -||=|-+-.+++.+.+|.+ +-.+++|+|.||.|++++.+-  .+.|.+|+++.|.+.
T Consensus        64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~  120 (211)
T COG2344          64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP  120 (211)
T ss_pred             CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence            4566666666666677876 446899999999999999643  478999999999863

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=90.09  E-value=0.3  Score=49.15  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=44.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCce-e---CCCCCCHHHHHHHHHh
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI-K---NPNGIDVPALLKYKKS  273 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i-~---~~~GlDi~~L~~~~~~  273 (424)
                      |+|++|+|+|+|+=|.+=|..|.+.|..|+ |.=..|.. +   .++|+++..+.+..+.
T Consensus        16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k~   74 (338)
T COG0059          16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAKR   74 (338)
T ss_pred             hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhhc
Confidence            899999999999999999999999999976 76666655 3   4678876666655543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.05  E-value=0.82  Score=49.61  Aligned_cols=104  Identities=15%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~  296 (424)
                      -++.|.|+|++|+.+++.|.++|..++ +.|.+          .+.+.+.++..-.+. +  ++ .++++.+    -.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d----------~~~~~~~~~~g~~~i-~--GD-~~~~~~L~~a~i~~a  482 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETS----------RTRVDELRERGIRAV-L--GN-AANEEIMQLAHLDCA  482 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEE-EEECC----------HHHHHHHHHCCCeEE-E--cC-CCCHHHHHhcCcccc
Confidence            478999999999999999999999988 55653          444444443211111 0  01 1122322    2367


Q ss_pred             ceeeeccccCcccc---ccccc--ccceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          297 DVLVPCALGGVLNK---ENAAD--VKAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       297 DIliPaA~~~~It~---~na~~--i~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      |.++=+.-.+.-|.   ..+.+  -.+++|+=..    +++..+.|++.|+-
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad  530 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGAN  530 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCC
Confidence            76654432221110   01111  2457777532    46777788888863

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=90.05  E-value=0.84  Score=47.54  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            577899999999999999999999998666688854

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.03  E-value=5.2  Score=39.46  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      .+|+|+|.|++|+.+++.|.+.|    .+|+.+..+.          .+.+......      ++..... +..++ ..+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~-~~~   64 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEI-FTK   64 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHH-Hhh
Confidence            37999999999999999999888    5676443321          1222222221      1112211 22233 348


Q ss_pred             cceeeeccccCcccccccc----ccc-ceEEEecCCCCCCHHHHHHHHh-CCceEecccccc
Q 014463          296 CDVLVPCALGGVLNKENAA----DVK-AKFIIEAANHPTDPEADEILSK-KGVVILPDIYAN  351 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~----~i~-akiIvEgAN~p~t~eA~~iL~~-rGI~viPD~laN  351 (424)
                      +|++|-|.-...+. +-+.    .++ -++|+--+|+-...+-.+.|.. +=|.++|-.-+-
T Consensus        65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~  125 (277)
T PRK06928         65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSA  125 (277)
T ss_pred             CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHH
Confidence            99999886543322 2222    222 2477778888666676777644 334778865443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.99  E-value=1.1  Score=44.23  Aligned_cols=69  Identities=17%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|.+|+.++..|.++|.+|+ +.|.+          .+.+.+..+ .+.+...     .++.+. -.+||++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi   62 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI   62 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence            379999999999999999999999877 44542          233333222 2322211     111222 25799999


Q ss_pred             eccccCc
Q 014463          301 PCALGGV  307 (424)
Q Consensus       301 PaA~~~~  307 (424)
                      .|.-...
T Consensus        63 lavp~~~   69 (279)
T PRK07417         63 LALPIGL   69 (279)
T ss_pred             EcCCHHH
Confidence            9975443

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=89.92  E-value=0.8  Score=43.45  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-Ccc--cCCC-CeeecCCcccccc
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SLN--DFQG-GNAMDLNDLLVHE  295 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~v~--~~~~-~~~i~~~~ll~~~  295 (424)
                      ++|+|+| .|++|+.+++.|.+.|.+|+ +.+.+          .+.+.+..+... .+.  ++.. ....+..+. -.+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHH-Hhc
Confidence            4799997 89999999999999999887 55543          222222222110 010  1110 011122223 247


Q ss_pred             cceeeeccccCcccc---cccccccceEEEecCCCCC
Q 014463          296 CDVLVPCALGGVLNK---ENAADVKAKFIIEAANHPT  329 (424)
Q Consensus       296 ~DIliPaA~~~~It~---~na~~i~akiIvEgAN~p~  329 (424)
                      +|++|-|.-...+.+   +-.+.++-++|+..+|+..
T Consensus        69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~  105 (219)
T TIGR01915        69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA  105 (219)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence            899988864443321   1122344589999999853

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.82  E-value=1  Score=45.17  Aligned_cols=53  Identities=25%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++++.+++|++++|+| ...||.-++.+|.+    ++|.|. +++++
T Consensus       137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~  194 (286)
T PRK14184        137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR  194 (286)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence            46898887665    56679999999999999 57799999999998    789887 66654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=89.75  E-value=3.9  Score=41.39  Aligned_cols=115  Identities=11%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC-CeeecC-Ccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG-GNAMDL-NDLLVHE  295 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~-~~~i~~-~~ll~~~  295 (424)
                      ..++++|.|.|..|+..+..+. ..+.+-|.|.|.+          .+...++.++-.  ..|+- ....++ ++.+ .+
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-~~  192 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQ--SKFNTEIYVVNSADEAI-EE  192 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHH--HhcCCcEEEeCCHHHHH-hc
Confidence            5679999999999998887764 4688888888774          233333322110  01110 112222 3333 48


Q ss_pred             cceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          296 CDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       296 ~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                      +||+|=|.-.  -.|+ +-+ +-.+-++.=|++.|--.|.+..+-++.-.++-|.
T Consensus       193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~  245 (325)
T PRK08618        193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVES  245 (325)
T ss_pred             CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence            9999977642  2344 333 3367788889998865555543333433333344

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.65  E-value=1.5  Score=34.59  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHH
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA  266 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~  266 (424)
                      +|+|+|.|.+|-.+|..|.+.|.+|. +.+....+.  ..+|.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~   42 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA   42 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence            68999999999999999999999987 777766665  4566543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=89.39  E-value=0.75  Score=43.62  Aligned_cols=53  Identities=26%  Similarity=0.290  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCC
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDIT  253 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~  253 (424)
                      ||=|...++.+=+.+|.. ...+|+|.|.|++|..+++.+  .+.|.+++++.|.+
T Consensus        65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            455555555444455655 557999999999999999864  35789999999874

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.26  E-value=1.5  Score=43.26  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDVS   36 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeCC
Confidence            589999999999999999999999987 56653

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=89.18  E-value=0.33  Score=49.50  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA  248 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa  248 (424)
                      +|.++.|||++|.|||.+|+.+|+.+...|.++|+
T Consensus       140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~  174 (406)
T KOG0068|consen  140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG  174 (406)
T ss_pred             eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence            35679999999999999999999999999999985

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.02  E-value=0.7  Score=48.93  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..++.++++++|.|.|.|..|..+|+.|.++|.+|+ ++|.+
T Consensus         8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~   48 (480)
T PRK01438          8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG   48 (480)
T ss_pred             hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            355667889999999999999999999999999977 66753

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=89.02  E-value=1.6  Score=39.27  Aligned_cols=70  Identities=17%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-----eecCC--ccccc
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-----AMDLN--DLLVH  294 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-----~i~~~--~ll~~  294 (424)
                      +|+|.|.|+.|..+|..|.+.|.+|. +.+.+          .+.+.++.+.+.....+++.+     .++++  +.+ .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~~----------~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVT-LWGRD----------EEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEE-EETSC----------HHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEE-EEecc----------HHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence            68999999999999999999998776 54442          244445554444333344322     22221  222 3


Q ss_pred             ccceeeecc
Q 014463          295 ECDVLVPCA  303 (424)
Q Consensus       295 ~~DIliPaA  303 (424)
                      ++|+++-|-
T Consensus        69 ~ad~Iiiav   77 (157)
T PF01210_consen   69 DADIIIIAV   77 (157)
T ss_dssp             T-SEEEE-S
T ss_pred             cccEEEecc
Confidence            678887663

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.97  E-value=1.2  Score=44.69  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY  270 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~  270 (424)
                      .+.|..|++..    ++++|.+++|++|+|+| ...||+-++.+|.++    ++.|. ++.++..       |+.   + 
T Consensus       133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~T~-------~l~---~-  196 (287)
T PRK14181        133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQSE-------NLT---E-  196 (287)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCCCC-------CHH---H-
Confidence            36899888765    55679999999999999 577999999999988    78876 7766320       111   1 


Q ss_pred             HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463          271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD  315 (424)
Q Consensus       271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~  315 (424)
                                           +...+||+|-|.. .+.|+.+.++.
T Consensus       197 ---------------------~~~~ADIvV~AvG~p~~i~~~~ik~  221 (287)
T PRK14181        197 ---------------------ILKTADIIIAAIGVPLFIKEEMIAE  221 (287)
T ss_pred             ---------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence                                 1246788887764 56677666664

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=88.90  E-value=0.71  Score=47.02  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      ..||+|.|+|++|+..++.+.+. +..+++|.|.+
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~   37 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR   37 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            47999999999999999988764 89999999986

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.79  E-value=1.2  Score=44.91  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~  253 (424)
                      .++|..|++    ++++.++.+++|++|+|+| ...||+-++.+|.+    +++.|. ++.++
T Consensus       139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~  196 (295)
T PRK14174        139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSA  196 (295)
T ss_pred             CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCC
Confidence            468998874    4566778999999999999 57799999999987    688876 66653

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=88.78  E-value=0.5  Score=50.89  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR   39 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            579999999999999999999999988 77764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=88.75  E-value=20  Score=37.90  Aligned_cols=33  Identities=36%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..++|+|+|.|.||..+|..|.+ |..|+ +.|.+
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D~~   37 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFDVN   37 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEE-EEeCC
Confidence            34789999999999999999876 68888 45653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.59  E-value=0.49  Score=46.84  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence            579999999999999999999999887 55653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.51  E-value=0.47  Score=51.08  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR   37 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            579999999999999999999999988 66764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=88.42  E-value=0.48  Score=41.35  Aligned_cols=34  Identities=32%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+||+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999999998655588864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=88.34  E-value=1.1  Score=41.20  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=27.6

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999999998645588865

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.11  E-value=0.85  Score=47.65  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++++.|.|.|..|..+|++|++.|++|+ ++|.+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~   37 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK   37 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence            3678999999999999999999999999987 67854

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=88.09  E-value=12  Score=37.10  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      =++|+..+++.    .+.+ .++++.|.|.|-.++.++-.|.+.|++-|.|.+.+          .++..++.+.-+  .
T Consensus       106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~--~  168 (272)
T PRK12550        106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG--Y  168 (272)
T ss_pred             CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC--C
Confidence            36777777653    3554 35699999999999999999999998755588874          233333333211  0


Q ss_pred             cCCCCeeecCCcccccccceeeeccccCcccccc-----c--ccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN-----A--ADV-KAKFIIEAANHPTDPEADEILSKKGVVILP  346 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~n-----a--~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP  346 (424)
                      .+      . +++...++|++|=|.--+.-...+     .  ..+ +..+|.+-.-+|..-.--+.-+++|..++.
T Consensus       169 ~~------~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~  237 (272)
T PRK12550        169 EW------R-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVIT  237 (272)
T ss_pred             cc------h-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeC
Confidence            11      0 112234589999775322211000     1  112 235788888777533333455677776543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.08  E-value=0.76  Score=43.41  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+.++|+|.|.|.+|+.+|..|...|..=+.+.|.+
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            788999999999999999999999998544477865

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02712 arogenate dehydrogenase

Probab=88.08  E-value=0.89  Score=50.69  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.++++++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr  400 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSR  400 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEEC
Confidence            4567889999999999999999999999999988 4454

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.98  E-value=0.73  Score=48.97  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence            568899999999999999999999999988 78864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.97  E-value=2.1  Score=44.57  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=65.9

Q ss_pred             HHHHHHHhC-CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463          207 TEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA  285 (424)
Q Consensus       207 ~~~~~~~~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~  285 (424)
                      ++.+.+.++ ..+..+++.|.|+|.+|+.+++.|.+.|..|+ +.|.+          .+.+.++.++...+.-+.+ ..
T Consensus       217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~~----------~~~~~~~~~~~~~~~~i~g-d~  284 (453)
T PRK09496        217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIERD----------PERAEELAEELPNTLVLHG-DG  284 (453)
T ss_pred             HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC----------HHHHHHHHHHCCCCeEEEC-CC
Confidence            344444343 33667899999999999999999999999988 55653          3444444443211110100 11


Q ss_pred             ecCCcc---cccccceeeeccccCc---cccccccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          286 MDLNDL---LVHECDVLVPCALGGV---LNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       286 i~~~~l---l~~~~DIliPaA~~~~---It~~na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      .+.+.+   --.++|.+|-+.-...   +....++.+. .++|+...    +++-.++|+..|+-
T Consensus       285 ~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~  345 (453)
T PRK09496        285 TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID  345 (453)
T ss_pred             CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence            111112   1236787775543222   1112223332 36777653    34455678888873

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=87.87  E-value=1.6  Score=43.53  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.|...+++    ..+.+++++++.|.|.|..|+.++..|.+.|++-|.|.+.+
T Consensus       110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            677666654    34556889999999999999999999999999744477764

>PLN02858 fructose-bisphosphate aldolase

Probab=87.86  E-value=1.9  Score=52.01  Aligned_cols=172  Identities=13%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      ...+|.++|+|++|+.+|+.|.+.|..|. +.|.+          .++..++.+.+        +... ++.++ ..+||
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~-a~~ad   62 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEA-AKDAA   62 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHH-HhcCC
Confidence            35689999999999999999999999986 55653          34444444432        2222 22233 34789


Q ss_pred             eeeeccccCcccccc-------ccccc-ceEEEecC-CCC-CCHHHHHHHHhCC--ceEecccc------ccccCcc--h
Q 014463          298 VLVPCALGGVLNKEN-------AADVK-AKFIIEAA-NHP-TDPEADEILSKKG--VVILPDIY------ANSGGVT--V  357 (424)
Q Consensus       298 IliPaA~~~~It~~n-------a~~i~-akiIvEgA-N~p-~t~eA~~iL~~rG--I~viPD~l------aNaGGVi--~  357 (424)
                      ++|-|.......++.       +..++ -++|++-. ..| ++.+..+.+.++|  +.++=--+      +.+|-++  +
T Consensus        63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv  142 (1378)
T PLN02858         63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA  142 (1378)
T ss_pred             EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence            999886543322221       22222 25666655 444 4566777899999  76652111      2223221  1


Q ss_pred             h----hHHHhhh----ccc-cCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          358 S----YFEWVQN----IQG-FMW-----EE----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       358 s----~~E~~qn----~~~-~~w-----~~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                      +    .+|-++.    ... .++     -.    .-+++-+...+..++.|.+..+++.|+++.....++.
T Consensus       143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~  213 (1378)
T PLN02858        143 SGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS  213 (1378)
T ss_pred             cCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            1    1232221    111 111     11    2244445555556778888899999999887766553

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=87.82  E-value=1.2  Score=44.95  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD  297 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D  297 (424)
                      .+..+|..+|.|++|++.+..|.+.|++|+ |-|.          +.++..++.+...++.+-|       .|+ ..+||
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~sP-------aeV-ae~sD   93 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVANSP-------AEV-AEDSD   93 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhCCH-------HHH-HhhcC
Confidence            456899999999999999999999999998 7664          4777888877766666543       222 34667


Q ss_pred             eeeec
Q 014463          298 VLVPC  302 (424)
Q Consensus       298 IliPa  302 (424)
                      ++|-|
T Consensus        94 vvitm   98 (327)
T KOG0409|consen   94 VVITM   98 (327)
T ss_pred             EEEEE
Confidence            66655

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.79  E-value=0.74  Score=45.68  Aligned_cols=36  Identities=28%  Similarity=0.605  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |++.+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            788999999999999999999999995444477765

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=87.79  E-value=1.3  Score=44.15  Aligned_cols=53  Identities=21%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|-+|++..    +++.+.++.|++++|+|-+ -||+-++.+|...+++|. ||.+.
T Consensus       136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~  189 (283)
T COG0190         136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR  189 (283)
T ss_pred             CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence            36899988765    5667899999999999965 489999999999999987 88874

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.76  E-value=0.61  Score=46.07  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence            479999999999999999999999987 55653

>PRK11579 putative oxidoreductase; Provisional

Probab=87.60  E-value=3.5  Score=41.78  Aligned_cols=102  Identities=17%  Similarity=0.262  Sum_probs=58.0

Q ss_pred             CeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-ccc
Q 014463          221 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-HEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~~~  296 (424)
                      .||+|+|+|.+|. +.+..+.. .++++++|+|.+.          ++..   +      .|++.... +.++++. .++
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~----------~~~~---~------~~~~~~~~~~~~ell~~~~v   65 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA----------TKVK---A------DWPTVTVVSEPQHLFNDPNI   65 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH----------HHHH---h------hCCCCceeCCHHHHhcCCCC
Confidence            5899999999997 45666654 4799999999752          2221   1      12222222 3356664 468


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      |+++-| .++..+.+-+.. +  +.-++||=   |+  | .+++++   .+++|+.+.
T Consensus        66 D~V~I~-tp~~~H~~~~~~al~aGkhVl~EK---Pla~t~~ea~~l~~~a~~~g~~l~  119 (346)
T PRK11579         66 DLIVIP-TPNDTHFPLAKAALEAGKHVVVDK---PFTVTLSQARELDALAKSAGRVLS  119 (346)
T ss_pred             CEEEEc-CCcHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHhCCEEE
Confidence            888876 333334333322 1  34566764   42  2 345443   356666553

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=87.56  E-value=1.9  Score=42.76  Aligned_cols=32  Identities=28%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|++|+.++..|.+.|..|. +.|.+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~   33 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWARD   33 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence            479999999999999999999999875 55653

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.47  E-value=3.1  Score=42.37  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=45.4

Q ss_pred             chhHH-HHHHHHHHHHHHhC--------C-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHH
Q 014463          197 AATGL-GVFFATEALLAEHG--------K-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA  266 (424)
Q Consensus       197 ~aTg~-Gv~~~~~~~~~~~g--------~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~  266 (424)
                      +..|+ ++-.....+.+..|        . .....+|+|.|.|-||.++|++..-.|++|. |-|.          +++.
T Consensus       135 eVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~----------n~~r  203 (371)
T COG0686         135 EVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL----------NIDR  203 (371)
T ss_pred             HHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeE-EEec----------CHHH
Confidence            45566 55555444333322        2 2556789999999999999999999999987 8775          4566


Q ss_pred             HHHHHH
Q 014463          267 LLKYKK  272 (424)
Q Consensus       267 L~~~~~  272 (424)
                      |..+..
T Consensus       204 l~~ldd  209 (371)
T COG0686         204 LRQLDD  209 (371)
T ss_pred             HhhhhH
Confidence            665544

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.43  E-value=1.5  Score=44.11  Aligned_cols=53  Identities=19%  Similarity=0.216  Sum_probs=43.4

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~  253 (424)
                      .++|..||+..    +++.|.+++|++|+|+| ...||.-++.+|.++    ++.|. ++.++
T Consensus       141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~  198 (297)
T PRK14168        141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR  198 (297)
T ss_pred             cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence            36898888765    45679999999999999 578999999999988    67776 76653

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=87.22  E-value=1.4  Score=43.52  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH------CC---CEEEEEEcCCCceeC----CCCCCHHHHHHHHHhcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE------HG---GKVVAVSDITGAIKN----PNGIDVPALLKYKKSNK  275 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~------~G---akVVaVsD~~G~i~~----~~GlDi~~L~~~~~~~g  275 (424)
                      +...|++.|.|+||+++...+..      ++   .+||+|||+.+.+..    |.-++-+...++.++++
T Consensus         2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~   71 (364)
T KOG0455|consen    2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG   71 (364)
T ss_pred             ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC
Confidence            34579999999999999876642      22   589999999876643    33343333334555544

>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]

Probab=87.21  E-value=7.9  Score=41.83  Aligned_cols=176  Identities=19%  Similarity=0.264  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCC
Q 014463          113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGS  192 (424)
Q Consensus       113 s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs  192 (424)
                      +..|-..|...|+.++..-.|+..-|-=.|+++.-.-  -+.+.|+..     -++-.+-+                   
T Consensus       233 ~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf--rlL~kYr~~-----~c~FNDDI-------------------  286 (582)
T KOG1257|consen  233 RGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF--RLLEKYRNK-----YCMFNDDI-------------------  286 (582)
T ss_pred             cccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH--HHHHHhccc-----cceecccc-------------------
Confidence            4445667899999999999999988888999975321  122344321     12222222                   


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH----HCCC-------EEEEEEcCCCceeCCC-
Q 014463          193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPN-  260 (424)
Q Consensus       193 ~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kVVaVsD~~G~i~~~~-  260 (424)
                          +-||-=+..++-.+++..+.++++.+|.++|.|..|..+|.++.    +.|.       ||- ..|++|-|...- 
T Consensus       287 ----QGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~  361 (582)
T KOG1257|consen  287 ----QGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRK  361 (582)
T ss_pred             ----cchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeecccc
Confidence                35666666677777888899999999999999999999998774    3452       444 677777665322 


Q ss_pred             -CCCHHHHHHHHHhcCCcccCCCCeeecCC-cccccccceeeecc-ccCccccccccc---ccce-EEEecCCCCC
Q 014463          261 -GIDVPALLKYKKSNKSLNDFQGGNAMDLN-DLLVHECDVLVPCA-LGGVLNKENAAD---VKAK-FIIEAANHPT  329 (424)
Q Consensus       261 -GlDi~~L~~~~~~~g~v~~~~~~~~i~~~-~ll~~~~DIliPaA-~~~~It~~na~~---i~ak-iIvEgAN~p~  329 (424)
                       .++-... .+.++...+.        +-. .+-.++..|||=|+ .++..|++-.+.   ...| +|---.| |+
T Consensus       362 ~~l~~~~~-~fAk~~~~~~--------~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSN-PT  427 (582)
T KOG1257|consen  362 ASLTEEKK-PFAKDHEEIK--------DLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSN-PT  427 (582)
T ss_pred             CCCChhhc-cccccChHHH--------HHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCC-Cc
Confidence             2221110 0001000000        111 13367899999877 588889887654   3444 4554444 54

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.10  E-value=0.79  Score=45.32  Aligned_cols=31  Identities=32%  Similarity=0.320  Sum_probs=27.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~   34 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI   34 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence            489999999999999999999999987 5564

>PLN02858 fructose-bisphosphate aldolase

Probab=87.07  E-value=2.1  Score=51.54  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=92.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccce
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDV  298 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DI  298 (424)
                      .++|.++|+|++|..+|+.|...|.+|+ +.|.+          .+++.+....        ++... ++.++ ..+||+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~--------Ga~~~~s~~e~-~~~aDv  383 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA--------GGLAGNSPAEV-AKDVDV  383 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc--------CCeecCCHHHH-HhcCCE
Confidence            3789999999999999999999999886 55643          2334333332        12112 22233 357999


Q ss_pred             eeeccccC-----cccc--cccccc-cceEEEecCCC-C-CCHHHHHHHHh--CCceEecccc------ccccCc--chh
Q 014463          299 LVPCALGG-----VLNK--ENAADV-KAKFIIEAANH-P-TDPEADEILSK--KGVVILPDIY------ANSGGV--TVS  358 (424)
Q Consensus       299 liPaA~~~-----~It~--~na~~i-~akiIvEgAN~-p-~t~eA~~iL~~--rGI~viPD~l------aNaGGV--i~s  358 (424)
                      ++-|--..     ++..  .-+..+ .-++|++-... | ++.+..+.+.+  +|+.++=--+      +..|-.  +++
T Consensus       384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvg  463 (1378)
T PLN02858        384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMAS  463 (1378)
T ss_pred             EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEE
Confidence            99775422     2211  112222 23566655543 4 34556677888  9998762222      222221  111


Q ss_pred             ----hHHHhhh----cc-ccCC-----CHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014463          359 ----YFEWVQN----IQ-GFMW-----EEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFT  408 (424)
Q Consensus       359 ----~~E~~qn----~~-~~~w-----~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~  408 (424)
                          .|+.++.    +. ..++     -.-.    +++-+...+...+.|.+..+++.|+++.+..-+
T Consensus       464 G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~ev  531 (1378)
T PLN02858        464 GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDI  531 (1378)
T ss_pred             CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence                2332221    11 1111     1112    333344444566778888999999998776544

>PRK05717 oxidoreductase; Validated

Probab=87.05  E-value=1.2  Score=42.35  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~~   42 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LADL   42 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEcC
Confidence            4588999999995 9999999999999999998 4554

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=87.03  E-value=2  Score=41.62  Aligned_cols=31  Identities=29%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC---CEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~  252 (424)
                      ++|+|+|+|++|+.+++.|.+.|   ..|. +.|.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r   36 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDP   36 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcC
Confidence            57999999999999999999888   4443 5555

>PLN02712 arogenate dehydrogenase

Probab=86.96  E-value=1.5  Score=48.99  Aligned_cols=32  Identities=41%  Similarity=0.633  Sum_probs=27.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      -+.++|+|+|+|++|+.+++.|.+.|.+|+++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~   81 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAH   81 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            34478999999999999999999999998754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=86.91  E-value=0.61  Score=47.91  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=60.1

Q ss_pred             EEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhc--CCcccCCCCeeec--C-Cccc--c
Q 014463          223 FAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSN--KSLNDFQGGNAMD--L-NDLL--V  293 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g~v~~~~~~~~i~--~-~~ll--~  293 (424)
                      |.|.|.|.||+.+++.|.+..-  +|+ |+|.+          .+++.+..++.  ..+..    ..++  + +++-  -
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l~~~~   65 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVEA----VQVDVNDPESLAELL   65 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEEE----EE--TTTHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhccccceeE----EEEecCCHHHHHHHH
Confidence            6789999999999999988774  555 88874          56665555431  11111    1121  1 2222  3


Q ss_pred             cccceeeeccccCccccccccc---ccceEEEecCCCCCCH---HHHHHHHhCCceEecccccccc
Q 014463          294 HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP---EADEILSKKGVVILPDIYANSG  353 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~---eA~~iL~~rGI~viPD~laNaG  353 (424)
                      .+||++|-|+... .+..-++.   .++.+|= -+.  +++   +-++..+++|+.++++.=.+.|
T Consensus        66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG  127 (386)
T PF03435_consen   66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG  127 (386)
T ss_dssp             TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred             hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence            4889999998654 33332222   2555554 111  122   2245677899999888655554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=86.90  E-value=1.6  Score=44.05  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      ++++|+|+|.|+||+.+|..|...|.  .++ +.|.+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~   40 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN   40 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            56799999999999999999988775  444 77764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.87  E-value=0.64  Score=46.20  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+|+|.|.+|+..|..|...|..|+ +-|.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFETT   37 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC
Confidence            389999999999999999999999988 66653

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=86.75  E-value=2.8  Score=36.06  Aligned_cols=100  Identities=20%  Similarity=0.348  Sum_probs=54.6

Q ss_pred             CeEEEEe----cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          221 MKFAIQG----FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       221 ~~vaIqG----fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ++|+|.|    -++.|..+.+.|.++|.+|+.|.-..+.+.                  .+.-|+.   +  +|+ -.++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------------G~~~y~s---l--~e~-p~~i   56 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------------GIKCYPS---L--AEI-PEPI   56 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------------TEE-BSS---G--GGC-SST-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------------cEEeecc---c--cCC-CCCC
Confidence            5899999    599999999999999999998743332211                  1112221   1  121 3566


Q ss_pred             ceeeeccccC----cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe-cc
Q 014463          297 DVLVPCALGG----VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL-PD  347 (424)
Q Consensus       297 DIliPaA~~~----~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi-PD  347 (424)
                      |+.+-|--..    .+.+--+..+++=++.-|   ..++++.+.+++.|+.++ |.
T Consensus        57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~  109 (116)
T PF13380_consen   57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN  109 (116)
T ss_dssp             SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred             CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence            7666654222    222222222344344444   457888999999999988 64

>TIGR03628 arch_S11P archaeal ribosomal protein S11P

Probab=86.58  E-value=2.9  Score=36.32  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CCCCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          192 SLGREAATGLGVFFATEALLAE-HGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      -.|+...|.|....+.+.+.+. ....++...|-|.|        .|.-...+.+-|.+.|.+|+.|.|.+..-+|
T Consensus        37 ~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN  112 (114)
T TIGR03628        37 KADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD  112 (114)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            3466778999998888888773 33557888999999        6788888889999999999999998755443

This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.42  E-value=1.1  Score=46.74  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++++++|.|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~   37 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK   37 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            4688999999999999999999999999987 66764

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.37  E-value=2.2  Score=42.84  Aligned_cols=31  Identities=26%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r   31 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR   31 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence            369999999999999999999998886 5554

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=86.36  E-value=2  Score=43.89  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      ++|+|.|. |.+|+.+++.|.++ +.+++++++...     .|-.+.+.      ...+........-+.++....++|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-----~g~~l~~~------~~~~~~~~~~~~~~~~~~~~~~vD~   71 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-----AGKPLSDV------HPHLRGLVDLVLEPLDPEILAGADV   71 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-----cCcchHHh------CcccccccCceeecCCHHHhcCCCE
Confidence            68999997 99999999999875 789999988421     11111111      0101111011111112223357999


Q ss_pred             eeeccccCcccccccccc-cc-eEEEecCCCC
Q 014463          299 LVPCALGGVLNKENAADV-KA-KFIIEAANHP  328 (424)
Q Consensus       299 liPaA~~~~It~~na~~i-~a-kiIvEgAN~p  328 (424)
                      ++-| +++..+.+.+... ++ +.|++-++..
T Consensus        72 Vf~a-lP~~~~~~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         72 VFLA-LPHGVSMDLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             EEEC-CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence            8886 4555666666554 22 4566666554

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.35  E-value=0.8  Score=46.50  Aligned_cols=47  Identities=28%  Similarity=0.382  Sum_probs=36.2

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEE
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAV  249 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaV  249 (424)
                      .-.||||.+.-+   +    .--.|.+++|.|.|.||..++.-...+|| |||+|
T Consensus       176 GvsTG~GAa~~~---A----kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv  223 (375)
T KOG0022|consen  176 GVSTGYGAAWNT---A----KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV  223 (375)
T ss_pred             cccccchhhhhh---c----ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence            358999964321   1    11478999999999999999998888886 88876

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=86.26  E-value=0.75  Score=45.58  Aligned_cols=55  Identities=29%  Similarity=0.297  Sum_probs=46.2

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCc
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGA  255 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~  255 (424)
                      ++|-.|++..    ++++|+.+.|++++|.| .=+||.-+|-+|+..|+++-.+-|.+=.
T Consensus       147 PcTP~gv~ei----L~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt  202 (309)
T KOG0089|consen  147 PCTPLGVVEI----LERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT  202 (309)
T ss_pred             CCchHHHHHH----HHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE
Confidence            6898888755    66789999999999999 6899999999999999988766665433

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=86.17  E-value=3.1  Score=42.95  Aligned_cols=32  Identities=34%  Similarity=0.569  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-----CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.++|.+.+.     ...||||-|.
T Consensus         4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~   40 (361)
T PTZ00434          4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM   40 (361)
T ss_pred             eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence            4899999999999999998764     5799999884

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=85.94  E-value=0.88  Score=46.15  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGA  255 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~  255 (424)
                      ++.++|+|+|.|+||+.+|..+...|. . +.+.|.+..
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence            345799999999999999999988885 7 558887543

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=85.80  E-value=2.9  Score=42.24  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=70.3

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALL  268 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~  268 (424)
                      =|..|-.+.|+|--   +.+.+    ..-+|.||.|.| .|.||+-+-++-.-.|++||+++-++-           +..
T Consensus       131 lg~lGm~glTAy~G---f~ei~----~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~  192 (343)
T KOG1196|consen  131 LGLLGMPGLTAYAG---FYEIC----SPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVD  192 (343)
T ss_pred             hhccCCchhHHHHH---HHHhc----CCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhh
Confidence            35555555666543   33433    334779999999 599999999888889999999998853           111


Q ss_pred             HHHHhcCCcc--cCCCCeeecC--CcccccccceeeeccccCcccccccc-cccceEEEecCCCC
Q 014463          269 KYKKSNKSLN--DFQGGNAMDL--NDLLVHECDVLVPCALGGVLNKENAA-DVKAKFIIEAANHP  328 (424)
Q Consensus       269 ~~~~~~g~v~--~~~~~~~i~~--~~ll~~~~DIliPaA~~~~It~~na~-~i~akiIvEgAN~p  328 (424)
                      -++.+.|.-.  +|.....++.  ...+..-.||++.--.++.++.--.. +.+.|+++.|+=.+
T Consensus       193 ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq  257 (343)
T KOG1196|consen  193 LLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ  257 (343)
T ss_pred             hhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence            1222222111  1111000000  12345668999988655554432111 24888999987543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.67  E-value=1.3  Score=44.34  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++++|.|.|.|++|+.+|+.|.+.|..|. +.|++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~   36 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR   36 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            46799999999999999999999999987 66654

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=85.49  E-value=0.9  Score=44.50  Aligned_cols=36  Identities=25%  Similarity=0.551  Sum_probs=30.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|+|.|.|-||+|+++.|.+-|..=+.+.|-+
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence            677899999999999999999999996444466643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.47  E-value=2.1  Score=44.68  Aligned_cols=31  Identities=32%  Similarity=0.422  Sum_probs=27.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++|.|.|+|++|+.+++.|.+.|..|+.| |.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi-d~   31 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVI-DT   31 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEE-EC
Confidence            47999999999999999999999999844 54

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed

Probab=85.38  E-value=3.6  Score=36.63  Aligned_cols=66  Identities=15%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CCCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          193 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       193 ~gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      .|+...|-|....+.+.+.+ .....++...|-|-|        .|.-...+.+.|...|.+|+.|.|.+..-+|
T Consensus        45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN  119 (132)
T PRK09607         45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD  119 (132)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            45667899998888888776 334557888999999        6777788889999999999999998765444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.35  E-value=0.87  Score=46.27  Aligned_cols=32  Identities=34%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~~   39 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDPA   39 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            589999999999999999999999998 66653

>PLN02256 arogenate dehydrogenase

Probab=85.31  E-value=1.6  Score=43.90  Aligned_cols=33  Identities=42%  Similarity=0.687  Sum_probs=29.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .++++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d   66 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS   66 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence            467899999999999999999999998888543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=85.09  E-value=2.6  Score=41.99  Aligned_cols=130  Identities=17%  Similarity=0.144  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      =+.|...+++.    .+.+++++++.|.|.|-+++.++-.|.+.|++-|.|.+.+          .++..++.+.-.  .
T Consensus       110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~  173 (283)
T PRK14027        110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--N  173 (283)
T ss_pred             CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--h
Confidence            37788777753    3345788999999999999999999999998766688764          233333332200  0


Q ss_pred             cCCCC--eeecC---CcccccccceeeeccccCcccc-c---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          279 DFQGG--NAMDL---NDLLVHECDVLVPCALGGVLNK-E---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       279 ~~~~~--~~i~~---~~ll~~~~DIliPaA~~~~It~-~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                      .++..  ...+.   ++.+ .++|++|=|.--+.-.. .   ....+ ...+|.+-.-+|..-.--+.-+++|..++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~  249 (283)
T PRK14027        174 AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL  249 (283)
T ss_pred             ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence            11110  01111   1122 36899996653211000 0   01112 34578888877753233345566776654

>PRK04148 hypothetical protein; Provisional

Probab=84.99  E-value=2  Score=38.32  Aligned_cols=34  Identities=32%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++++|+++|.| -|..+|+.|.+.|..|+| .|.+
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~   48 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN   48 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence            467899999999 888899999999999995 5764

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=84.95  E-value=14  Score=36.03  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=58.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC----EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++|+|+|+|++|+.+++-|.+.+.    +++ ++|.+.          +.+              +.... ++.++. 
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~----------~~~--------------~~~~~~~~~~~~-   55 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSK----------KNT--------------PFVYLQSNEELA-   55 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCCh----------hcC--------------CeEEeCChHHHH-
Confidence            45789999999999999999988762    344 444321          000              00111 223333 


Q ss_pred             cccceeeeccccCccc---ccccccccceEEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 014463          294 HECDVLVPCALGGVLN---KENAADVKAKFIIEAANHPTDPEADEILSK--KGVVILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~~~~It---~~na~~i~akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~l  349 (424)
                      .+||++|-|.-...+-   .+..+.+..+.|+--+++-.....++++..  +-+.++|-..
T Consensus        56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p  116 (260)
T PTZ00431         56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP  116 (260)
T ss_pred             HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence            4789999885433321   122222334566767766554445555532  2345666544

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.85  E-value=1.4  Score=46.62  Aligned_cols=35  Identities=34%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence            567899999999999999999999999876 78864

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.81  E-value=5  Score=42.97  Aligned_cols=32  Identities=31%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|-.|.++|  .+|+++ |.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~~   35 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DIS   35 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-ECC
Confidence            58999999999999999999884  789866 643

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.62  E-value=2.9  Score=40.93  Aligned_cols=31  Identities=35%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  252 (424)
                      ++|+|+|.|++|+.+++.|.+.|.  +|+ +.|.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~   33 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDH   33 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcC
Confidence            379999999999999999999885  454 3454

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=84.40  E-value=1.4  Score=42.07  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            788999999999999999999999998655577865

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=84.36  E-value=6.8  Score=38.88  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAV  249 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaV  249 (424)
                      ..|.+|.|.|.|.||..+++++...|++ |+++
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~  194 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV  194 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            3589999999999999999999999999 8854

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=84.29  E-value=1.2  Score=41.99  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++..+|.|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            678899999999999999999999998766687764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=84.14  E-value=1.9  Score=40.89  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence            478999999995 9999999999999999988 5555

>PRK08628 short chain dehydrogenase; Provisional

Probab=83.64  E-value=1.8  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463          215 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       215 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  249 (424)
                      +.+++|+++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~   37 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF   37 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence            4578999999999 5899999999999999998844

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=83.63  E-value=7  Score=40.95  Aligned_cols=121  Identities=24%  Similarity=0.355  Sum_probs=71.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC-----------ceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG-----------AIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN  289 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G-----------~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~  289 (424)
                      ++|+|.|.|=||...+-.|.+.|..||+| |.+.           -||+|.   +++|++.....|.+.       .+.+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~-------fTtd   69 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLR-------FTTD   69 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEE-------EEcC
Confidence            58999999999999999999999999965 6542           245543   344444333322221       1121


Q ss_pred             -cccccccceeeeccccCcccccc----------ccc----c-cceEEEecCCCC--CCHHHHHHHHhCC------ceEe
Q 014463          290 -DLLVHECDVLVPCALGGVLNKEN----------AAD----V-KAKFIIEAANHP--TDPEADEILSKKG------VVIL  345 (424)
Q Consensus       290 -~ll~~~~DIliPaA~~~~It~~n----------a~~----i-~akiIvEgAN~p--~t~eA~~iL~~rG------I~vi  345 (424)
                       +---.++|+.+-|---.. .+++          ++.    + +.++||-=.--|  +|.+-.+.+.+..      |..-
T Consensus        70 ~~~a~~~adv~fIavgTP~-~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N  148 (414)
T COG1004          70 YEEAVKDADVVFIAVGTPP-DEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN  148 (414)
T ss_pred             HHHHHhcCCEEEEEcCCCC-CCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence             111236777776642111 1122          111    1 336777766666  4677777777666      7777


Q ss_pred             cccccccc
Q 014463          346 PDIYANSG  353 (424)
Q Consensus       346 PD~laNaG  353 (424)
                      |.||--.-
T Consensus       149 PEFLREG~  156 (414)
T COG1004         149 PEFLREGS  156 (414)
T ss_pred             hHHhcCcc
Confidence            87775543

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=83.50  E-value=7  Score=38.84  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHCC--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          219 SNMKFAIQGFGNVGS-WAAKFFHEHG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~-~~a~~L~~~G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      +-.||+|+|.|+.+. +.+..+.+.+  ..+++|+|.+          .+.+.+..++.+--..|     -+-+++++.+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~   66 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAKAY-----TDLEELLADP   66 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCC
Confidence            346899999997764 4667777655  5999999984          45556655554321122     2335677654


Q ss_pred             -cceeeeccccCccccccccc---ccceEEEec
Q 014463          296 -CDVLVPCALGGVLNKENAAD---VKAKFIIEA  324 (424)
Q Consensus       296 -~DIliPaA~~~~It~~na~~---i~akiIvEg  324 (424)
                       +|+++=|. ++..+.+-+..   -..-++||=
T Consensus        67 ~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EK   98 (342)
T COG0673          67 DIDAVYIAT-PNALHAELALAALEAGKHVLCEK   98 (342)
T ss_pred             CCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcC
Confidence             78777662 33333333322   144577775

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=83.48  E-value=1.3  Score=44.79  Aligned_cols=33  Identities=36%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence            3689999999999999999988778988 77875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=83.48  E-value=1.5  Score=41.33  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            677899999999999999999999998766688865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.44  E-value=1.8  Score=46.24  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..+++|.|.|+|..|..++++|+..|++|+ ++|.+
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence            467899999999999999999999999988 68853

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=83.33  E-value=2  Score=35.97  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=44.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~D  297 (424)
                      .||+|+|+|+.|+.-...+.+.  +.++++|+|.+          .+...+..++. .+..|     -+-+++++ .++|
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~-~~~~~-----~~~~~ll~~~~~D   64 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKY-GIPVY-----TDLEELLADEDVD   64 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHT-TSEEE-----SSHHHHHHHTTES
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHh-cccch-----hHHHHHHHhhcCC
Confidence            3799999999999998777654  68999999984          34444443332 12222     12356665 4688


Q ss_pred             eeeecc
Q 014463          298 VLVPCA  303 (424)
Q Consensus       298 IliPaA  303 (424)
                      +.+-|.
T Consensus        65 ~V~I~t   70 (120)
T PF01408_consen   65 AVIIAT   70 (120)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            888774

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK12828 short chain dehydrogenase; Provisional

Probab=83.29  E-value=2.1  Score=39.74  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++++++.|.|- |.+|+.+++.|.++|++|+.+ +.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~-~r   39 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI-GR   39 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE-eC
Confidence            367899999985 999999999999999998744 44

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=83.22  E-value=2.1  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~   36 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG   36 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            478999999996 8999999999999999998553

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=83.16  E-value=10  Score=38.39  Aligned_cols=115  Identities=19%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC-CCeee-cCCcccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ-GGNAM-DLNDLLVHE  295 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~-~~~~i-~~~~ll~~~  295 (424)
                      .-++++|+|.|..|++-++.|.. ...+-|.|.|.+          .+...++.++-.   .+. ..... +.++.. .+
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~  192 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG  192 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence            35789999999999997777654 334455577663          334333333211   111 11122 234444 58


Q ss_pred             cceeeeccccC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          296 CDVLVPCALGG--VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       296 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                      +||++-|.-..  .+..+..+. .+-+.+=|++.|-..|.+..+-++.- ++-|..
T Consensus       193 aDiVitaT~s~~P~~~~~~l~~-g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~  246 (325)
T TIGR02371       193 CDILVTTTPSRKPVVKADWVSE-GTHINAIGADAPGKQELDPEILKNAK-IFVDDL  246 (325)
T ss_pred             CCEEEEecCCCCcEecHHHcCC-CCEEEecCCCCcccccCCHHHHhcCc-EEECCH
Confidence            99999876432  344443333 77788899999876666644444442 444643

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=83.14  E-value=3.3  Score=41.45  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+..+|.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d   52 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK   52 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            567899999999999999999999998877788864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.08  E-value=1.9  Score=45.91  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+++|.|.|+|..|..++++|++.|++|. ++|.+
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~   47 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN   47 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence            677899999999999999999999999765 78863

>PTZ00117 malate dehydrogenase; Provisional

Probab=83.00  E-value=1.5  Score=44.37  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=29.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~  253 (424)
                      .+.++|+|+|.|+||+.++..|...| .. +.+.|.+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence            46689999999999999999998888 56 4477875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.96  E-value=1.9  Score=46.05  Aligned_cols=36  Identities=22%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +++++|.|.|+|..|..+|++|++.|++|. ++|.+.
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence            567899999999999999999999999987 788753

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=82.80  E-value=2.5  Score=42.38  Aligned_cols=33  Identities=30%  Similarity=0.388  Sum_probs=27.1

Q ss_pred             CeEEEEecChHHHHHHH-HHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAK-FFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~  253 (424)
                      .+|+|+|.|++|...+. ++...+.++++|+|.+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d   35 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID   35 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence            58999999999997754 4445689999999974

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07060 short chain dehydrogenase; Provisional

Probab=82.78  E-value=2.4  Score=39.64  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r   41 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA-AAR   41 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeC
Confidence            3578899999997 89999999999999999884 454

>PRK09291 short chain dehydrogenase; Provisional

Probab=82.63  E-value=1.9  Score=40.73  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          220 NMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       220 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ++++.|.|. |.+|+.+++.|.+.|++|++++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            468889885 9999999999999999998654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=82.51  E-value=4  Score=41.05  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ..|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~  203 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN  203 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence            468899999999999999999999999988543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=82.50  E-value=2.3  Score=39.82  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ++++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~   37 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD   37 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            6788999999 69999999999999999998654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.35  E-value=2.3  Score=44.61  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=31.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++++++.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            568899999999999999999999999987 67764

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.34  E-value=2.1  Score=45.11  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence            678899999999999999999999999876 78864

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=82.22  E-value=2.4  Score=42.43  Aligned_cols=33  Identities=36%  Similarity=0.395  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITG  254 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G  254 (424)
                      ++|+|+|.|+||+.+|..|...|.  .|+ +.|.+.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~~~   35 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDINE   35 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence            379999999999999999999884  555 778753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=82.19  E-value=2.6  Score=42.47  Aligned_cols=37  Identities=27%  Similarity=0.549  Sum_probs=32.5

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463          215 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       215 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      |.+.++++|.|.| .|-+|+++++.|.++|.+|+++.+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r   42 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR   42 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5568899999999 599999999999999999997654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=82.16  E-value=2.2  Score=37.48  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998544477754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06849 hypothetical protein; Provisional

Probab=82.16  E-value=2  Score=44.19  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             CCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.++|.|.|.+. +|..+++.|++.|.+|+++ |++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~~   37 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DSL   37 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCC
Confidence            458999999875 8999999999999999954 654

>PRK06138 short chain dehydrogenase; Provisional

Probab=82.14  E-value=2.4  Score=39.83  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~   36 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD   36 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence            468899999995 9999999999999999998553

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=82.10  E-value=2.1  Score=42.36  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++.+++|.|.|.||..+++++...|+++|.++|.
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            35789999999999999999999999997767665

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=81.98  E-value=2.7  Score=36.85  Aligned_cols=30  Identities=33%  Similarity=0.377  Sum_probs=26.0

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+|.|.|.+|...|-.|++.|..|.-++-+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            689999999999999999999998855443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05309 30S ribosomal protein S11; Validated

Probab=81.56  E-value=5.8  Score=35.06  Aligned_cols=65  Identities=18%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          194 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      |....|-|....+.+.+.+ .....++...|.+-|+|.=-..+.+.|...|.+|+.|.|.+..-||
T Consensus        53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~TpiphN  118 (128)
T PRK05309         53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPHN  118 (128)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            3445777777777776665 2334567888999999986677778999999999999998765443

>PRK12742 oxidoreductase; Provisional

Probab=81.51  E-value=7.5  Score=36.17  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      .++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~   36 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT   36 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence            367899999995 999999999999999998844

>PLN02206 UDP-glucuronate decarboxylase

Probab=81.49  E-value=2.4  Score=44.84  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463          214 HGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       214 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +|..-+++||.|.| .|-||+++++.|.++|.+|+++.
T Consensus       113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld  150 (442)
T PLN02206        113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD  150 (442)
T ss_pred             cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence            45566789999999 59999999999999999999764

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=81.44  E-value=4.7  Score=40.96  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=30.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -.|.+|+|.|.|.||..+++++...|++|++++++
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~  216 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS  216 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36889999999999999999999999998866544

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=81.29  E-value=3.3  Score=38.48  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++++++.|.|. |.+|+++++.|.+.|++|+.++..
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~   38 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            467889999995 999999999999999999756543

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=81.19  E-value=4  Score=34.76  Aligned_cols=32  Identities=34%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             eEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          222 KFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      +++|+|. |.+|..+++.|.+ .+.+++++++++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~   34 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA   34 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence            5889994 9999999999987 589999996653

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=81.08  E-value=1.8  Score=43.31  Aligned_cols=43  Identities=33%  Similarity=0.456  Sum_probs=34.3

Q ss_pred             HHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463          210 LLAEHGK-----SISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT  253 (424)
Q Consensus       210 ~~~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  253 (424)
                      +|+++|+     .+..+.|+|.|.|.||+.+|++|.+.|. |++ ..|.+
T Consensus        67 ALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD  115 (422)
T KOG2336|consen   67 ALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD  115 (422)
T ss_pred             HHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence            4566674     3778899999999999999999999984 655 56654

>CHL00041 rps11 ribosomal protein S11

Probab=81.06  E-value=6.4  Score=34.18  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             CCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          194 GREAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      |....|-|....+.+.+++. ....++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|.+..-||
T Consensus        49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN  114 (116)
T CHL00041         49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN  114 (116)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            34457777777777666652 234578889999999986667778999999999999998765444

>TIGR03632 bact_S11 30S ribosomal protein S11

Probab=81.02  E-value=6.3  Score=33.72  Aligned_cols=65  Identities=18%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          194 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      |....|-|....+.+.+++ .....++...|.+-|+|.=-..+.+.|...|.+|+-|.|.+..-||
T Consensus        36 g~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN  101 (108)
T TIGR03632        36 GSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN  101 (108)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence            4456788877777776665 2334578888999999986677778999999999999998765553

This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=80.87  E-value=2.5  Score=41.49  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++|+|.|.|++|+.+|..|.+.|..|+. .+.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~-~~r   31 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTL-VAR   31 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEC
Confidence            4799999999999999999999998874 444

>PRK06523 short chain dehydrogenase; Provisional

Probab=80.84  E-value=3  Score=39.63  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~-~r   41 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTT-AR   41 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE-eC
Confidence            4588999999994 899999999999999998854 44

>PRK06841 short chain dehydrogenase; Provisional

Probab=80.83  E-value=3  Score=39.39  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+. .+.
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~-~~r   47 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVAL-LDR   47 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence            47899999999 599999999999999999884 444

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=80.73  E-value=3.1  Score=39.06  Aligned_cols=35  Identities=29%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++++++.|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~   36 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP   36 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence            46788999985 999999999999999999865543

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.72  E-value=3.1  Score=38.95  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++++.|.|. |.+|+.+++.|.++|++|+ +.+.+
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r~   38 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVV-VTDRN   38 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence            367889999995 9999999999999999987 44543

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.63  E-value=2.8  Score=41.92  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|.|   -+|+.+|+.|.+.|++|| +.|.
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~~   42 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGTW   42 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEec
Confidence            46899999999996   899999999999999998 6653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.62  E-value=2.5  Score=41.77  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|.|.|.+|+.+|..|...|..|+ +.|.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDVS   35 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEE-EEeCC
Confidence            479999999999999999999999987 56653

>PRK07774 short chain dehydrogenase; Provisional

Probab=80.56  E-value=3.2  Score=39.05  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++++++.|.|. |-+|+++++.|.++|++|+. .+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~-~~r   38 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVV-ADI   38 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence            67899999995 99999999999999999984 444

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=80.54  E-value=2.3  Score=45.25  Aligned_cols=36  Identities=33%  Similarity=0.464  Sum_probs=32.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      ..+++|+|.|.|.-|..++++|++.|++|+ ++|.+-
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~   40 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRP   40 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCC
Confidence            458999999999999999999999999988 788653

>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit

Probab=80.49  E-value=36  Score=35.89  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ..++|+||+|-|-......++++|.+.|++++.+.-
T Consensus       299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~  334 (435)
T cd01974         299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVLT  334 (435)
T ss_pred             HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEe
Confidence            357899999999888888999999999999977653

The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.45  E-value=2.7  Score=43.82  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.++|.|.|+|..|..+|++|+++|++|+ ++|.+
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~   35 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS   35 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            44689999999999999999999999876 57754

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=80.37  E-value=7.2  Score=37.13  Aligned_cols=112  Identities=15%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC---E-EEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG---K-VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---k-VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.+||+|+|.|++|+.+++.|.+.|.   + ++ +.+.+         +.+.+.+..++.+       .... +.++++ 
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~-   64 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-------VSTTTDWKQHV-   64 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence            45789999999999999999887762   3 43 33321         1234444433321       1111 223444 


Q ss_pred             cccceeeeccccCccccccccc----ccceEEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 014463          294 HECDVLVPCALGGVLNKENAAD----VKAKFIIEAANHPTDPEADEILSK--KGVVILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~l  349 (424)
                      .++|+++-|.-...+ .+.+..    ++-++|+--+.+-....-.+.+..  +=+++.|.+-
T Consensus        65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a  125 (245)
T PRK07634         65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTA  125 (245)
T ss_pred             hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHH
Confidence            479999988644332 332222    233677777665433333333322  1234556543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.34  E-value=3.1  Score=38.79  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~   35 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN   35 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            367899999996 889999999999999999854

>PRK08339 short chain dehydrogenase; Provisional

Probab=80.32  E-value=3.3  Score=39.95  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+.+|+.|.++|++|+ +.|.
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r   40 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSR   40 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeC
Confidence            3578999999996 7899999999999999988 5555

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=80.23  E-value=5.8  Score=41.56  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|++|.|.|-                 |.+|..+|+.|.++|++|+.++
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~  235 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS  235 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence            4689999999987                 8899999999999999998553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.14  E-value=6.1  Score=40.31  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+|.|.|.+|.-++..+...|+..|-++|.+
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~  202 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS  202 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            399999999999999998888997666577864

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=80.13  E-value=3.3  Score=39.21  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~-~~r   39 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAI-ADL   39 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEE-EeC
Confidence            67899999996 99999999999999999884 444

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=80.09  E-value=1.7  Score=35.88  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             CCeEEEEecChHHHHHHH-HHHHCCCEEEEEEcCCC
Q 014463          220 NMKFAIQGFGNVGSWAAK-FFHEHGGKVVAVSDITG  254 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~G  254 (424)
                      ..+++|+|.|+.|+.++. .+...|.+++++.|.+.
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~   38 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP   38 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence            468999999999998874 34578999999999753

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
3k92_A	424	Crystal Structure Of A E93k Mutant Of The Majour Ba		2e-99
1b3b_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		4e-99
1b26_A	416	Glutamate Dehydrogenase Length = 416		5e-99
2tmg_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		1e-93
1bvu_A	418	Glutamate Dehydrogenase From Thermococcus Litoralis		1e-92
1euz_A	419	Glutamate Dehydrogenase From Thermococcus Profundus		2e-92
1gtm_A	419	Structure Of Glutamate Dehydrogenase Length = 419		8e-92
3k8z_A	423	Crystal Structure Of Gudb1 A Decryptified Secondary		5e-90
3aoe_A	424	Crystal Structure Of Hetero-Hexameric Glutamate Deh		1e-89
3aog_A	440	Crystal Structure Of Glutamate Dehydrogenase (Gdhb)		1e-89
2yfq_A	421	Crystal Structure Of Glutamate Dehydrogenase From P		2e-78
1v9l_A	421	L-Glutamate Dehydrogenase From Pyrobaculum Islandic		7e-77
3etd_A	501	Structure Of Glutamate Dehydrogenase Complexed With		6e-68
1nqt_A	496	Crystal Structure Of Bovine Glutamate Dehydrogenase		1e-67
1l1f_A	505	Structure Of Human Glutamate Dehydrogenase-Apo Form		1e-67
1nr1_A	496	Crystal Structure Of The R463a Mutant Of Human Glut		2e-67
3mw9_A	501	Bovine Glutamate Dehydrogenase Complexed With Nadh,		9e-67
3aoe_E	419	Crystal Structure Of Hetero-Hexameric Glutamate Deh		1e-64
1hwy_A	501	Bovine Glutamate Dehydrogenase Complexed With Nad A		1e-64
2yfh_A	448	Structure Of A Chimeric Glutamate Dehydrogenase Len		4e-43
3r3j_A	456	Kinetic And Structural Characterization Of Plasmodi		2e-42
3sbo_A	447	Structure Of E.Coli Gdh From Native Source Length =		4e-42
4fcc_A	450	Glutamate Dehydrogenase From E. Coli Length = 450		5e-42
2yfg_E	447	Structural Determinants Of Cofactor Specificity And		6e-42
1hrd_A	449	Glutamate Dehydrogenase Length = 449		6e-41
1k89_A	449	K89l Mutant Of Glutamate Dehydrogenase Length = 449		4e-40
1aup_A	449	Glutamate Dehydrogenase Length = 449		2e-39
2bma_A	470	The Crystal Structure Of Plasmodium Falciparum Glut		3e-27
3vpx_A	364	Crystal Structure Of Leucine Dehydrogenase From A P		9e-20
1bxg_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		3e-19
1c1d_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		3e-19
1bxg_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		3e-19
1bw9_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		3e-19
1c1x_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		4e-19
1bw9_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		4e-19
1c1x_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		5e-19
1c1d_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		5e-19
1leh_A	364	Leucine Dehydrogenase From Bacillus Sphaericus Leng		2e-16

>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424

Iteration: 1
 Score =  359 bits (922), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/424 (41%), Positives = 260/424 (61%), Gaps = 16/424 (3%)
Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           +N   +T    + A R LG    +   +  P R + V   +  D+GS+  F G+R QH++
Sbjct: 15  LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           A GP KGG+R+HPEV+ ++V AL+  MT K  +A +PYGG KGGI C+PR +S  ELERL
Sbjct: 75  AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRE 179
           +R + + I  ++G  +D+PAPD+ TNSQ MAW++DEYS+     SP  +TGKP+V     
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLV----- 189
Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
                    LGGS GRE AT  GV    E  + + G  + N +  IQGFGN GS+ AKF 
Sbjct: 190 ---------LGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFM 240
Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVL 299
           H+ G KV+ +SD  G + NP+G+D+P             +    + +   +LL  +CD+L
Sbjct: 241 HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDIL 299
Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP A+   +  +NA +++A  ++E AN PT  +A +IL+++GV+++PDI A++GGVTVSY
Sbjct: 300 VPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSY 359
Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQN QG+ W EE+V  +L+  M+S+F+ I     TH  ++R+ A+  G+ + A+A+ 
Sbjct: 360 FEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASR 419
Query: 420 LRGW 423
            RGW
Sbjct: 420 FRGW 423

>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415

Iteration: 1
 Score =  358 bits (918), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10  NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
            F  AA ++ L+S L   L  P R + VE  +  DDG +  F G+R+QH+ ARGP KGGI
Sbjct: 12  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70  RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
           RYHP+V  DEV ALA  MTWKTAV  +P+GG KGG+  +P++LS +ELERL+R F  +I 
Sbjct: 72  RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
            +IG + D+PAPD+ TN+  +AW +D YS   GH+   +VTGKP+              +
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPV--------------E 177
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
           LGGS GRE ATG GV       +   G        A+QGFGNVG +AA     E G KVV
Sbjct: 178 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 237
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
           AVSD  G I NP G DV               +  G  +   +LL  + D+LVP AL G 
Sbjct: 238 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 297
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
           ++  NA  +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 298 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 357
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
            F W+ ++V + L++ M  AF D+  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 358 SFFWDLDQVRNALEKMMKKAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412

>pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416

Iteration: 1
 Score =  357 bits (917), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10  NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
            F  AA ++ L+S L   L  P R + VE  +  DDG +  F G+R+QH+ ARGP KGGI
Sbjct: 13  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 70  RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
           RYHP+V  DEV ALA  MTWKTAV  +P+GG KGG+  +P++LS +ELERL+R F  +I 
Sbjct: 73  RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
            +IG + D+PAPD+ TN+  +AW +D YS   GH+   +VTGKP+              +
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPV--------------E 178
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
           LGGS GRE ATG GV       +   G        A+QGFGNVG +AA     E G KVV
Sbjct: 179 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 238
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
           AVSD  G I NP G DV               +  G  +   +LL  + D+LVP AL G 
Sbjct: 239 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 298
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
           ++  NA  +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 299 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 358
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
            F W+ ++V + L++ M  AF D+  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 359 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413

>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415

Iteration: 1
 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10  NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
            F  AA ++ L+S L   L  P R + VE  +  DDG +  F G+R+QH+ ARGP KGGI
Sbjct: 12  QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70  RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
           RYHP+V  DEV ALA  MTWKTAV  +P+GG KGG+  +P++LS  ELERL+R F ++I 
Sbjct: 72  RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
            +IG + D+PAPD+ TN+  +AW +DEY    GH+   +VTGKP+              +
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPV--------------E 177
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
           LGGS GRE ATG GV       +   G        A+QGFGNVG +AA     E G KVV
Sbjct: 178 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 237
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
           AVSD  G I NP G DV               +  G  +   +LL  + D+LVP AL G 
Sbjct: 238 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 297
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
           ++  NA  +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 298 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 357
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
            F W+ ++V + L++ M  AF D+  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 358 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412

>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis Length = 418

Iteration: 1
 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/419 (42%), Positives = 239/419 (57%), Gaps = 18/419 (4%)
Query: 9   RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
           +    AA+ + +  +    L  P R ++V   +  DDGS+  F GFR+Q++ ARGP KGG
Sbjct: 11  KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 69  IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
           IR+HPE     V ALA  MTWKTAV  +PYGG KGG+ CNP+E+S  E ERL R + + I
Sbjct: 71  IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEY---SKFHGHSPAVVTGKPIVSIKRETEKQRN 185
           +D+I  + D+PAPD+ TN Q MAW++DEY   S+    S  V+TGKP             
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKP------------- 177
Query: 186 KNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGG 244
              +GG + R  AT  G  +         G  +     AIQG+GN G + AK    E+G 
Sbjct: 178 -PSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGM 236
Query: 245 KVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCAL 304
           KVVAVSD  G I NP+G++               DF G   +   +LL  E DVL P A+
Sbjct: 237 KVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAI 296
Query: 305 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
             V+ K+NA ++KAK + E AN PT PEADEIL +KG++I+PD   N+GGVTVSYFEWVQ
Sbjct: 297 EEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQ 356
Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           NI G  W  E+   +L + M  AF D+    +  N N+R  A+ + V+RV QA   RGW
Sbjct: 357 NITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGW 415

>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419

Iteration: 1
 Score =  336 bits (861), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/419 (42%), Positives = 238/419 (56%), Gaps = 18/419 (4%)
Query: 9   RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
           +    AA+ + +  +    L  P R ++V   I  DDGS+  F GFR+QH+ ARGP KGG
Sbjct: 12  KQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGG 71
Query: 69  IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
           IR+HP      V ALA  MTWK AV  +PYGG KGGI  NP+ELS  E ERL R + + +
Sbjct: 72  IRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAV 131
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYS---KFHGHSPAVVTGKPIVSIKRETEKQRN 185
           +D+IG   D+PAPD+ TN + M W++DEY    +  G +  V+TGKP+            
Sbjct: 132 YDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPL------------ 179
Query: 186 KNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH-GG 244
              +GGSLGR  AT  G  F         G  +   K A+QG+GN G + AK   E  G 
Sbjct: 180 --SIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGM 237
Query: 245 KVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCAL 304
            VVAVSD  G I NP+G+D               DF G   +   +LL  E DVL P A+
Sbjct: 238 TVVAVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAI 297
Query: 305 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
             V+ ++NA ++KAK + E AN P  PEAD+IL +KG++ +PD   N+GGVTVSYFEWVQ
Sbjct: 298 EEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQ 357
Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           NI G+ W EE+V  +L + M  AF ++    +  N ++R  A+ + V+RV QA   RGW
Sbjct: 358 NINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGW 416

>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419

Iteration: 1
 Score =  333 bits (855), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 181/420 (43%), Positives = 242/420 (57%), Gaps = 19/420 (4%)
Query: 9   RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
           +    AA+ + +  +    L  P R ++V   +  DDGS+  F GFR+QH+ ARGP KGG
Sbjct: 11  KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 69  IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
           IR+HPE     V ALA  MTWKTAV  +PYGG KGGI  +P++LS  E ERL R + + I
Sbjct: 71  IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF-HGHSPA--VVTGKPIVSIKRETEKQRN 185
           +D+I  + D+PAPD+ TN Q MAW++DEY       +PA  ++TGKP+            
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPL------------ 178
Query: 186 KNDLGGSLGREAATGLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-HG 243
              +GGSLGR  AT  G  +   EA       ++     AIQG+GN G + AK   E  G
Sbjct: 179 --SIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFG 236
Query: 244 GKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCA 303
            KVVAVSD  G I NP+G++               DF G   +   +LL  E DVL P A
Sbjct: 237 MKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAA 296
Query: 304 LGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWV 363
           +  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWV
Sbjct: 297 IEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWV 356
Query: 364 QNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           QNI G+ W  E+V   L + M  AF D+  + +  N ++R  A+ + V RV QA L RGW
Sbjct: 357 QNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 416

>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423

Iteration: 1
 Score =  328 bits (840), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/424 (40%), Positives = 255/424 (60%), Gaps = 17/424 (4%)
Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           ++ L +T      A   LG   ++   L  P R + V+  +  DDGS+  F G+R  H++
Sbjct: 15  LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYR-AHND 73
Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           + GP KGGIR+HP V   EV AL+  M+ K  +  +PYGG KGGI C+PR++S  ELERL
Sbjct: 74  SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRE 179
           +R + + I  ++G  +DVPAPD+ TNSQ MAW++DEYS+    +SP  +TGKP+V     
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLV----- 188
Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
                    LGGS GRE+AT  GV    +    + G  I   +  +QGFGN GS+ AKF 
Sbjct: 189 ---------LGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFM 239
Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVL 299
           H+ G KVV +SD  G + +P G+D+                   + +   +LL  +CD+L
Sbjct: 240 HDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN-DTITNQELLELDCDIL 298
Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP A+   + +ENA +++AK ++EAAN PT  E  +ILS + ++++PD+ A++GGVTVSY
Sbjct: 299 VPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSY 358
Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQN QGF W EE+V  +L++ M+ +F +I  M      ++R+ A+ +GV ++A+A+ 
Sbjct: 359 FEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASR 418
Query: 420 LRGW 423
            RGW
Sbjct: 419 FRGW 422

>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424

Iteration: 1
 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 240/406 (59%), Gaps = 15/406 (3%)
Query: 18  LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
           LG  + L  SL  P R + V+  +  DDGS+A F G+R+ H+ ARGP KGG+RYHPEV  
Sbjct: 30  LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 78  DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
            EV ALA  MT K A   +PYGG KGGI  +PR+LS  ELERLTR +T +I  L+G  RD
Sbjct: 90  SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE 196
           +PAPD+ T  + MAW++D YS   G + P VVTGKPI               LGGSLGR 
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIA--------------LGGSLGRR 195
Query: 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI 256
            ATG GVF    A   + G  +   + AIQGFGNVG+ AA+ FH+HG +VVAV D TG +
Sbjct: 196 DATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV 255
Query: 257 KNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
            N  GID                +     +   D      + LVP AL   + ++NA  +
Sbjct: 256 YNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRI 315
Query: 317 KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKV 376
           +A+ + E AN PT P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+   + W EE++
Sbjct: 316 RARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEI 375
Query: 377 NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
           N  L+R + +AF+ +  + Q     LR  A+ +   RV +A  LRG
Sbjct: 376 NARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRG 421

>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 240/406 (59%), Gaps = 15/406 (3%)
Query: 18  LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
           LG  + L  SL  P R + V+  +  DDGS+A F G+R+ H+ ARGP KGG+RYHPEV  
Sbjct: 46  LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 78  DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
            EV ALA  MT K A   +PYGG KGGI  +PR+LS  ELERLTR +T +I  L+G  RD
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE 196
           +PAPD+ T  + MAW++D YS   G + P VVTGKPI               LGGSLGR 
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIA--------------LGGSLGRR 211
Query: 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI 256
            ATG GVF    A   + G  +   + AIQGFGNVG+ AA+ FH+HG +VVAV D TG +
Sbjct: 212 DATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV 271
Query: 257 KNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
            N  GID                +     +   D      + LVP AL   + ++NA  +
Sbjct: 272 YNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRI 331
Query: 317 KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKV 376
           +A+ + E AN PT P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+   + W EE++
Sbjct: 332 RARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEI 391
Query: 377 NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
           N  L+R + +AF+ +  + Q     LR  A+ +   RV +A  LRG
Sbjct: 392 NARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRG 437

>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421

Iteration: 1
 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/430 (37%), Positives = 226/430 (52%), Gaps = 21/430 (4%)
Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           +N L A     R A   LG D  +   L  P R I++   +  DDG++  F G+R  H +
Sbjct: 5   LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           A GP KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI  +P ELS  ELE+L
Sbjct: 65  AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAV--VTGKPIVSIKR 178
           +R + + ++  +G   D+PAPD+ TN Q M+W +DEY K +G    +   TGKP+     
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVA---- 180
Query: 179 ETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF 238
                      GGS GR  ATG GV           G  + + K A+QGFGNVG++  K 
Sbjct: 181 ----------FGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKN 230
Query: 239 FHEHGGKVVAVSDI-----TGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV 293
               GGKV A+++        A+ N NGID                F G   +   +   
Sbjct: 231 IERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWT 290
Query: 294 HECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSG 353
            E D++VP AL  V+  E A  + AK + EAAN PT PE D++L+++G+ + PDI  NSG
Sbjct: 291 KEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSG 350
Query: 354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNR 413
           GV VSY+EWVQN  G+ W E +V  + +  MM A K +  +   +N  LR   +   +  
Sbjct: 351 GVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKS 410
Query: 414 VAQATLLRGW 423
           +  A  LRGW
Sbjct: 411 IDVAMKLRGW 420

>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Complexed With Nad Length = 421

Iteration: 1
 Score =  284 bits (726), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 159/418 (38%), Positives = 227/418 (54%), Gaps = 32/418 (7%)
Query: 19  GLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD 78
           G      + L  P R + V   +  D G    F G+R+QH +  GP KGG+R+HPEV   
Sbjct: 22  GFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA 81
Query: 79  EVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDV 138
           +  ALA LMT K ++A +PYGGAKG +  +P++LS  ELE L+R + + I  LIG   D+
Sbjct: 82  DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDI 141
Query: 139 PAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREA 197
           PAPD+GTN+Q MAW++DEYSK  G++ P V T KP               +L G+  RE 
Sbjct: 142 PAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKP--------------PELWGNPVREY 187
Query: 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIK 257
           ATG GV  AT  +  +    I     AIQG GNVG W A +  + G KV+AVSDI G   
Sbjct: 188 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAY 247
Query: 258 NPNGIDV-----------PAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGG 306
              G++V           PA              +  +A     +   + D+ VP A+  
Sbjct: 248 RKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA-----IFKLDVDIFVPAAIEN 302
Query: 307 VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
           V+  +NA  VKA+ ++E AN PT PEA+ IL ++GVV++PDI AN+GGV +SY EWV+N+
Sbjct: 303 VIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENL 362
Query: 367 QGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN-CNLRMGAFTLGVNRVAQATLLRGW 423
           Q ++W+EE+    L+  M++  + +    Q      +R  A    + R+  A  +RGW
Sbjct: 363 QWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420

>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501

Iteration: 1
 Score =  254 bits (649), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 191/340 (56%), Gaps = 29/340 (8%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  + +ELE++TR FT ++     IG   DVPAPDM T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E 
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 230
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
              SI  M        FA+QGFGNVG  + ++ H  G K VAV +  G+I NP+GID   
Sbjct: 231 SYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKE 290
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
                        F      +   +L  +CD+L+P A    L K NA  VKAK I E AN
Sbjct: 291 LEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 349
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
            PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 350 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 389

>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 191/340 (56%), Gaps = 29/340 (8%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH + R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  + +ELE++TR FT ++     IG   DVPAPDM T  + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E 
Sbjct: 180 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 225
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
              SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID   
Sbjct: 226 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 285
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
                        F      +   +L  +CD+L+P A    L K NA  VKAK I E AN
Sbjct: 286 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 344
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
            PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 345 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 384

>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 190/340 (55%), Gaps = 29/340 (8%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 69  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  + +ELE++TR FT ++     IG   DVPAPDM T  + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E 
Sbjct: 189 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 234
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
              SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID   
Sbjct: 235 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 294
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
                        F      +   +L  +CD+L+P A    L K NA  VKAK I E AN
Sbjct: 295 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 353
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
            PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 354 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 393

>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496

Iteration: 1
 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 190/340 (55%), Gaps = 29/340 (8%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  + +ELE++TR FT ++     IG   DVPAPDM T  + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E 
Sbjct: 180 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 225
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
              SI  M        F +QGFGNVG  + ++ H  G K +AV +  G+I NP+GID   
Sbjct: 226 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 285
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
                        F      +   +L  +CD+L+P A    L K NA  VKAK I E AN
Sbjct: 286 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 344
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
            PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 345 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 384

>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501

Iteration: 1
 Score =  250 bits (639), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 188/340 (55%), Gaps = 29/340 (8%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  + +ELE++TR FT ++     IG   DVPAPDM T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E 
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 230
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
              SI  M        F +QGFGNVG  + ++ H  G K + V +  G+I NP+GID   
Sbjct: 231 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKE 290
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
                        F      +   +L  +CD+L+P A    L K NA  VKAK I E AN
Sbjct: 291 LEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 349
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
            PT PEAD+I  ++ ++++PD+Y N+GGVTVSYFEW+ N+
Sbjct: 350 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNL 389

>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 419

Iteration: 1
 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 207/410 (50%), Gaps = 19/410 (4%)
Query: 14  AARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHP 73
           A ++ G+       L  P R + +   +  DDG +  F G+R+ HD ARGP KGG+R  P
Sbjct: 25  ALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDP 84
Query: 74  EVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIG 133
            V   +   LA  MT K AV  +P+GGA GGI  +P+ LS  ELERL R +T ++  LIG
Sbjct: 85  GVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIG 144
Query: 134 IHRDVPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGS 192
              D+  PD+G + Q MAWI+D YS   G + P VVTGKP              + LGGS
Sbjct: 145 PDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKP--------------HALGGS 190
Query: 193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252
            GR+ A GLG     EAL    G  +   +  +QG G VG+  A      G +VVAV+  
Sbjct: 191 EGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATS 250
Query: 253 TGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN 312
            G +  P G+DV                     +   ++   E +VLV  A  G L+ + 
Sbjct: 251 MGGMYAPEGLDVAEVLSAYEATGSLPRLD----LAPEEVFGLEAEVLVLAAREGALDGDR 306
Query: 313 AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
           A  V+A+ ++E AN   +PEA+  L  KG +++PD+ +  GG+  SY EWVQ++  F W 
Sbjct: 307 ARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWS 366
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
            E+V    +  +      +    +    +LRMGA  L + R+ +AT LRG
Sbjct: 367 PEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRG 416

>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501

Iteration: 1
 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/341 (41%), Positives = 191/341 (56%), Gaps = 31/341 (9%)
Query: 41  IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
           I +DDGS     G+R QH + R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GG
Sbjct: 65  IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
           AK G+  NP+  +  +LE++TR FT ++     IG   DVPAP+M T  + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
              GH    + A VTGKPI                GG  GR +ATG GVF   E  + E+
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFI-EN 229
Query: 215 GKSIS---------NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP 265
              +S         +  FA+QGFGNVG  + ++ H  G K VAV +  G+I NP+GID  
Sbjct: 230 ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPK 289
Query: 266 AXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAA 325
                         F      +   +L  +CD+L+P A    L K NA  VKAK I E A
Sbjct: 290 ELEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGA 348
Query: 326 NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
           N PT P+AD+I  ++ ++++PD+Y N+GGVTVSYF+ ++N+
Sbjct: 349 NGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNL 389

>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase Length = 448

Iteration: 1
 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/412 (29%), Positives = 187/412 (45%), Gaps = 28/412 (6%)
Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER ++IP R I+       D+G +    G+R+Q + A GP KGG+R+ P V+   +  L
Sbjct: 49  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
           G  ++ + ++  +Y K   G    V+TGK                  GGSL R  ATG G
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLIRPEATGYG 213
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
           + + TEA+L  HG     M+ ++ G GNV  +A +   E G +V+  SD +G + + +G 
Sbjct: 214 LVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGF 273
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAAD 315
                                 A +   + +          D+ +PCA    L+ + A  
Sbjct: 274 TKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQ 333
Query: 316 VKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
           + A   K + E AN PT  EA E+  + GV+  P   AN+GGV  S  E  QN     W+
Sbjct: 334 LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWK 393
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
            EKV+  L   M           + +    NL  GA  +G  ++A A + +G
Sbjct: 394 AEKVDARLHHIMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 445

>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium Falciparum Glutamate Dehydrogenase 2 Length = 456

Iteration: 1
 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 183/413 (44%), Gaps = 43/413 (10%)
Query: 31  PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
           P R I+       D G      GFR+Q+++  GP KGG+R+HP V+   +  L     +K
Sbjct: 64  PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 91  TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
            ++  +P GG KGG   +P+  S +E+ +  + F   +   IG + DVPA D+G   + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 151 AWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEAL 210
            ++  +Y K       V+TGK I                GGS  R  ATG GV +  E +
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNI--------------KWGGSNIRAEATGYGVVYFAENV 229
Query: 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXX 270
           L +   ++ N K  + G GNV  +  +   E G  V+ +SD  G I  PNG         
Sbjct: 230 LKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGF-------T 282
Query: 271 XXXXXXXXDFQGGNAMDLNDLLVHE---------------CDVLVPCALGGVLNKENAAD 315
                   D +    + L + L +                CD+  PCA    +N EN AD
Sbjct: 283 KEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEIN-ENDAD 341
Query: 316 V----KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
           +    K K I+E AN PT  +A   L +  +++ P   AN+GGV VS  E  QN     W
Sbjct: 342 LFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQW 401
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRG 422
             ++ + +L+  M S ++      + +    +L  GA   G  +VA + L +G
Sbjct: 402 THQETDMKLQNIMKSIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQG 454

>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source Length = 447

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22  SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
           S LER L+ P R I+       D   +     +R+Q  +A GP KGG+R+HP V+   + 
Sbjct: 49  SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82  ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
            L    T+K A+  +P GG KGG   +P+  S  E+ R  +    +++  +G   DVPA 
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
           D+G   + + ++     K   ++  V TGK +                GGSL R  ATG 
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 213
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
           G+ + TEA+L  HG     M+ ++ G GNV  +A +   E G +V+  SD +G + + +G
Sbjct: 214 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG 273
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
                                  A +   + +          D+ +PCA    L+ + A 
Sbjct: 274 FTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAH 333
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
            + A   K + E AN PT  EA E+  + GV+  P   AN+GGV  S  E  QN     W
Sbjct: 334 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 393
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
           + EKV+  L   M+    DI   C  H       N   GA   G  +VA A L +G
Sbjct: 394 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445

>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli Length = 450

Iteration: 1
 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22  SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
           S LER L+ P R I+       D   +     +R+Q  +A GP KGG+R+HP V+   + 
Sbjct: 52  SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 82  ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
            L    T+K A+  +P GG KGG   +P+  S  E+ R  +    +++  +G   DVPA 
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
           D+G   + + ++     K   ++  V TGK +                GGSL R  ATG 
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 216
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
           G+ + TEA+L  HG     M+ ++ G GNV  +A +   E G +V+  SD +G + + +G
Sbjct: 217 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG 276
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
                                  A +   + +          D+ +PCA    L+ + A 
Sbjct: 277 FTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAH 336
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
            + A   K + E AN PT  EA E+  + GV+  P   AN+GGV  S  E  QN     W
Sbjct: 337 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 396
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
           + EKV+  L   M+    DI   C  H       N   GA   G  +VA A L +G
Sbjct: 397 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 448

>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain Flexibility In Bacterial Glutamate Dehydrogenases Length = 447

Iteration: 1
 Score =  168 bits (425), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22  SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
           S LER L+ P R I+       D   +     +R+Q  +A GP KGG+R+HP V+   + 
Sbjct: 49  SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82  ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
            L    T+K A+  +P GG KGG   +P+  S  E+ R  +    +++  +G   DVPA 
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
           D+G   + + ++     K   ++  V TGK +                GGSL R  ATG 
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 213
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
           G+ + TEA+L  HG     M+ ++ G GNV  +A +   E G +V+  SD +G + + +G
Sbjct: 214 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESG 273
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
                                  A +   + +          D+ +PCA    L+ + A 
Sbjct: 274 FTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAH 333
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
            + A   K + E AN PT  EA E+  + GV+  P   AN+GGV  S  E  QN     W
Sbjct: 334 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 393
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
           + EKV+  L   M+    DI   C  H       N   GA   G  +VA A L +G
Sbjct: 394 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445

>pdb|1HRD|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/414 (29%), Positives = 189/414 (45%), Gaps = 30/414 (7%)
Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER ++IP R I+       D+G +    G+R+Q + A GP KGG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
           G  ++ + ++  +Y K   G    V+TGK                  GGSL R  ATG G
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
             +  EA++     ++     A+ GFGNV   AAK   E G K V +S   G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV--------HECDVLVPCALGGVLNKENAA 314
                             +  +  D   +           + D+++PCA    ++ E A 
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
            + A   K+ IE AN PT  EA   L ++  +V+ P    N+GGV VS FE  QN +   
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
           W  E+V+ +L + M           + +    NL  GA  +G  ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  162 bits (410), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 188/414 (45%), Gaps = 30/414 (7%)
Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER ++IP R I+       D+G +    G+R+Q + A GP  GG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
           G  ++ + ++  +Y K   G    V+TGK                  GGSL R  ATG G
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
             +  EA++     ++     A+ GFGNV   AAK   E G K V +S   G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV--------HECDVLVPCALGGVLNKENAA 314
                             +  +  D   +           + D+++PCA    ++ E A 
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
            + A   K+ IE AN PT  EA   L ++  +V+ P    N+GGV VS FE  QN +   
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
           W  E+V+ +L + M           + +    NL  GA  +G  ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|1AUP|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 186/414 (44%), Gaps = 30/414 (7%)
Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER ++IP R I+       D+G +    G+R+Q + A GP  GG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
           G  ++ + ++  +Y K   G    V+TGK                  GGSL R  ATG G
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
             +  EA++     ++     A+ GFGNV   AAK   E G K V +S   G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 D--------VPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAA 314
                    +              D  G            + D+++PCA    ++ E A 
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
            + A   K+ IE AN PT  EA   L ++  +V+ P    N+GGV V  FE  QN +   
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
           W  E+V+ +L + M           + +    NL  GA  +G  ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446

>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate Dehydrogenase, A Putative Target For Novel Antimalarial Drugs Length = 470

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 170/413 (41%), Gaps = 42/413 (10%)
Query: 31  PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
           P R I+       D+G       FR+Q+++A GP KGG+R+HP V+   V  L     +K
Sbjct: 77  PERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFK 136
Query: 91  TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
            ++  +  GG KGG   +P+  S +E+ +  + F  +++  IG   DVPA D+G   + +
Sbjct: 137 NSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREI 196
Query: 151 AWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEAL 210
            ++  +Y K        +TGK +                GGS  R  ATG G+ +    +
Sbjct: 197 GYLYGQYKKIVNSFNGTLTGKNV--------------KWGGSNLRVEATGYGLVYFVLEV 242
Query: 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXX 270
           L      +      + G GNV  +  +       KV+ +SD  G +  PNG         
Sbjct: 243 LKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGF-------T 295
Query: 271 XXXXXXXXDFQGGNAMDLNDLLVHE---------------CDVLVPCALGGVLNKENAAD 315
                   D +      + + L H                C +  PCA    ++ + A  
Sbjct: 296 HENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKL 355
Query: 316 VKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
           ++    I   E AN P+  +A  +     ++  P   AN+GGV +S  E  QN Q   W 
Sbjct: 356 LQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWT 415
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNCN---LRMGAFTLGVNRVAQATLLRG 422
            E V+ +LK  M + F         +  N   L+ GA   G  +VA++ + +G
Sbjct: 416 RETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQG 468

>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A Psychrophilic Bacterium Sporosarcina Psychrophila. Length = 364

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 52/305 (17%)
Query: 58  HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
           HD   GP  GG R   Y  E +  ++   LA+ MT+K A A +  GG K  I  NP+   
Sbjct: 32  HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPK--- 88
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
             + + + R F + I  L G  R + A D+GT    M  I  E     G S         
Sbjct: 89  TDKNDEMFRAFGRYIEGLNG--RYITAEDVGTTEADMDLINLETDYVTGTSAGA------ 140
Query: 174 VSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNV 231
                           G S      T  G+++  +A   E     S++    A+QG GNV
Sbjct: 141 ----------------GSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNV 184
Query: 232 GSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDL 291
                ++ HE G K++ ++DI     N   +                D  G  A+ +N++
Sbjct: 185 AYALCEYLHEEGAKLI-ITDI-----NEEAVQ------------RAVDAFGATAVGINEI 226
Query: 292 LVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYA 350
              E D+  PCALG ++N E    +KAK I  +AN+   +    +++ + G+V  PD   
Sbjct: 227 YSQEADIFAPCALGAIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVI 286
Query: 351 NSGGV 355
           NSGGV
Sbjct: 287 NSGGV 291

>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 283 APDFVANAGG 292

>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 282 APDFVANAGG 291

>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 283 APDFVANAGG 292

>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 283 APDFVANAGG 292

>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 282 APDFVANAGG 291

>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 26  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 86  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 283 APDFVANAGG 292

>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 282 APDFVANAGG 291

>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54  FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
           F I+ D+ + GP  GG R   Y    D   +   LA  MT K AV+ +P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
            PR  +  S   R+ R+  + I  L G +     PD+ TNS  M   L++ ++F      
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+   S++R           GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
            PD  AN+GG
Sbjct: 282 APDFVANAGG 291

>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus Length = 364

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 120/305 (39%), Gaps = 52/305 (17%)
Query: 58  HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
           HD   GP  GG R   Y+ E +  ++   LA+ MT+K A A +  GG K  I  +P    
Sbjct: 32  HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
             ++ R    F Q ++      R + A D+GT    M  I  E     G SPA       
Sbjct: 92  NEDMFRALGRFIQGLN-----GRYITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 174 VSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNV 231
                           G S      T  GV+   +A   E     S+  +  ++QG GNV
Sbjct: 140 ---------------FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV 184
Query: 232 GSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDL 291
                K  +  G K+V V+D+                            +G +A+  N +
Sbjct: 185 AKALCKKLNTEGAKLV-VTDVN-----------------KAAVSAAVAEEGADAVAPNAI 226
Query: 292 LVHECDVLVPCALGGVLNKENAADVKAKFIIEAA-NHPTDPEADEILSKKGVVILPDIYA 350
               CD+  PCALG VLN      +KAK I  +A N   DP   + L + G+V  PD   
Sbjct: 227 YGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVI 286
Query: 351 NSGGV 355
           N+GGV
Sbjct: 287 NAGGV 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	0.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	0.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	0.0
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	0.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	0.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	0.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	0.0
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	0.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	1e-157
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	1e-154
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	1e-138
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	1e-132
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	1e-132
2yfg_A	447	NADP-specific glutamate dehydrogenase; oxidoreduct	1e-123
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	1e-04
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	9e-04

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score =  662 bits (1710), Expect = 0.0
 Identities = 192/424 (45%), Positives = 264/424 (62%), Gaps = 16/424 (3%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           +        F  AA ++ L+S L   L  P R + VE  +  DDG +  F G+R+QH+ A
Sbjct: 4   SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVA 63

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGGIRYHP+V  DEV ALA  MTWKTAV  +P+GG KGG+  +P++LS  ELERL+
Sbjct: 64  RGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLS 123

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRET 180
           R F ++I  +IG + D+PAPD+ TN+  +AW +DEY    GH    +VTGKP+       
Sbjct: 124 RRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPV------- 176

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF- 239
                  +LGGS GRE ATG GV       +   G        A+QGFGNVG +AA    
Sbjct: 177 -------ELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLIS 229

Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL 299
            E G KVVAVSD  G I NP G DV  L++YKK + ++  +  G  +   +LL  + D+L
Sbjct: 230 QELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDIL 289

Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP AL G ++  NA  +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSY
Sbjct: 290 VPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSY 349

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQ++Q F W+ ++V + L++ M  AF D+  + + +N ++R  A+ L ++RVA AT 
Sbjct: 350 FEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATK 409

Query: 420 LRGW 423
            RG 
Sbjct: 410 KRGI 413

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score =  663 bits (1712), Expect = 0.0
 Identities = 183/423 (43%), Positives = 245/423 (57%), Gaps = 15/423 (3%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
                           LG  + L  SL  P R + V+  +  DDGS+A F G+R+ H+ A
Sbjct: 30  GPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTA 89

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGG+RYHPEV   EV ALA  MT K A   +PYGG KGGI  +PR+LS  ELERLT
Sbjct: 90  RGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLT 149

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRET 180
           R +T +I  L+G  RD+PAPD+ T  + MAW++D YS   G   P VVTGKPI       
Sbjct: 150 RRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPI------- 202

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                   LGGSLGR  ATG GVF    A   + G  +   + AIQGFGNVG+ AA+ FH
Sbjct: 203 -------ALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH 255

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
           +HG +VVAV D TG + N  GID   LL++ +    +  +     +   D      + LV
Sbjct: 256 DHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLV 315

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
           P AL   + ++NA  ++A+ + E AN PT P AD+IL +KGV+++PD+ AN+GGVTVSYF
Sbjct: 316 PAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYF 375

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQ+   + W EE++N  L+R + +AF+ +  + Q     LR  A+ +   RV +A  L
Sbjct: 376 EWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARAL 435

Query: 421 RGW 423
           RG 
Sbjct: 436 RGL 438

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score =  660 bits (1706), Expect = 0.0
 Identities = 169/430 (39%), Positives = 235/430 (54%), Gaps = 21/430 (4%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           +N L A     R A   LG D  +   L  P R I++   +  DDG++  F G+R  H +
Sbjct: 5   LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           A GP KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI  +P ELS  ELE+L
Sbjct: 65  AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH--SPAVVTGKPIVSIKR 178
           +R + + ++  +G   D+PAPD+ TN Q M+W +DEY K +G        TGKP+     
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVA---- 180

Query: 179 ETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF 238
                      GGS GR  ATG GV           G  + + K A+QGFGNVG++  K 
Sbjct: 181 ----------FGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKN 230

Query: 239 FHEHGGKVVAVSDI-----TGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 293
               GGKV A+++        A+ N NGID   LL YK++NK+L  F G   +   +   
Sbjct: 231 IERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWT 290

Query: 294 HECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSG 353
            E D++VP AL  V+  E A  + AK + EAAN PT PE D++L+++G+ + PDI  NSG
Sbjct: 291 KEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSG 350

Query: 354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNR 413
           GV VSY+EWVQN  G+ W E +V  + +  MM A K +  +   +N  LR   +   +  
Sbjct: 351 GVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKS 410

Query: 414 VAQATLLRGW 423
           +  A  LRGW
Sbjct: 411 IDVAMKLRGW 420

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score =  659 bits (1703), Expect = 0.0
 Identities = 176/424 (41%), Positives = 264/424 (62%), Gaps = 16/424 (3%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
           +N   +T    + A R LG    +   +  P R + V   +  D+GS+  F G+R QH++
Sbjct: 15  LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
           A GP KGG+R+HPEV+ ++V AL+  MT K  +A +PYGG KGGI C+PR +S  ELERL
Sbjct: 75  AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRE 179
           +R + + I  ++G  +D+PAPD+ TNSQ MAW++DEYS+     SP  +TGKP+      
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPL------ 188

Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
                    LGGS GRE AT  GV    E  + + G  + N +  IQGFGN GS+ AKF 
Sbjct: 189 --------VLGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFM 240

Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL 299
           H+ G KV+ +SD  G + NP+G+D+P LL  + S   + +    + +   +LL  +CD+L
Sbjct: 241 HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDIL 299

Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
           VP A+   +  +NA +++A  ++E AN PT  +A +IL+++GV+++PDI A++GGVTVSY
Sbjct: 300 VPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSY 359

Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
           FEWVQN QG+ W EE+V  +L+  M+S+F+ I     TH  ++R+ A+  G+ + A+A+ 
Sbjct: 360 FEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASR 419

Query: 420 LRGW 423
            RGW
Sbjct: 420 FRGW 423

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score =  650 bits (1680), Expect = 0.0
 Identities = 182/427 (42%), Positives = 248/427 (58%), Gaps = 19/427 (4%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           +      +    AA+ + +  +    L  P R ++V   +  DDGS+  F GFR+QH+ A
Sbjct: 4   DPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWA 63

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGGIR+HPE     V ALA  MTWKTAV  +PYGG KGGI  +P++LS  E ERL 
Sbjct: 64  RGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLA 123

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH---SPAVVTGKPIVSIKR 178
           R + + I+D+I  + D+PAPD+ TN Q MAW++DEY         +  ++TGKP+     
Sbjct: 124 RGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPL----- 178

Query: 179 ETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAK 237
                     +GGSLGR  AT  G  +         G  ++     AIQG+GN G + AK
Sbjct: 179 ---------SIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAK 229

Query: 238 FFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296
              E  G KVVAVSD  G I NP+G++   +LK+K  + S+ DF G   +   +LL  E 
Sbjct: 230 IMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEV 289

Query: 297 DVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVT 356
           DVL P A+  V+ K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVT
Sbjct: 290 DVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVT 349

Query: 357 VSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQ 416
           VSYFEWVQNI G+ W  E+V   L + M  AF D+  + +  N ++R  A+ + V RV Q
Sbjct: 350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQ 409

Query: 417 ATLLRGW 423
           A L RGW
Sbjct: 410 AMLDRGW 416

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score =  640 bits (1654), Expect = 0.0
 Identities = 148/423 (34%), Positives = 210/423 (49%), Gaps = 19/423 (4%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
                       A ++ G+       L  P R + +   +  DDG +  F G+R+ HD A
Sbjct: 13  GLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIA 72

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGG+R  P V   +   LA  MT K AV  +P+GGA GGI  +P+ LS  ELERL 
Sbjct: 73  RGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLV 132

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRET 180
           R +T ++  LIG   D+  PD+G + Q MAWI+D YS   G   P VVTGKP        
Sbjct: 133 RRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPH------- 185

Query: 181 EKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240
                   LGGS GR+ A GLG     EAL    G  +   +  +QG G VG+  A    
Sbjct: 186 -------ALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAE 238

Query: 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300
             G +VVAV+   G +  P G+DV  +L   ++  SL            ++   E +VLV
Sbjct: 239 RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPE----EVFGLEAEVLV 294

Query: 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYF 360
             A  G L+ + A  V+A+ ++E AN   +PEA+  L  KG +++PD+ +  GG+  SY 
Sbjct: 295 LAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYL 354

Query: 361 EWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLL 420
           EWVQ++  F W  E+V    +  +      +    +    +LRMGA  L + R+ +AT L
Sbjct: 355 EWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRL 414

Query: 421 RGW 423
           RG 
Sbjct: 415 RGV 417

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score =  638 bits (1648), Expect = 0.0
 Identities = 159/431 (36%), Positives = 231/431 (53%), Gaps = 22/431 (5%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
              L       +    + G      + L  P R + V   +  D G    F G+R+QH +
Sbjct: 4   TGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCD 63

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
             GP KGG+R+HPEV   +  ALA LMT K ++A +PYGGAKG +  +P++LS  ELE L
Sbjct: 64  VLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEEL 123

Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRE 179
           +R + + I  LIG   D+PAPD+GTN+Q MAW++DEYSK  G+  P V T KP       
Sbjct: 124 SRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPP------ 177

Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
                   +L G+  RE ATG GV  AT  +  +    I     AIQG GNVG W A + 
Sbjct: 178 --------ELWGNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWL 229

Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS-----LNDFQGGNAM-DLNDLLV 293
            + G KV+AVSDI G      G++V  + K K                   + + + +  
Sbjct: 230 EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFK 289

Query: 294 HECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSG 353
            + D+ VP A+  V+  +NA  VKA+ ++E AN PT PEA+ IL ++GVV++PDI AN+G
Sbjct: 290 LDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAG 349

Query: 354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDI-KTMCQTHNCNLRMGAFTLGVN 412
           GV +SY EWV+N+Q ++W+EE+    L+  M++  + + K   +     +R  A    + 
Sbjct: 350 GVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALE 409

Query: 413 RVAQATLLRGW 423
           R+  A  +RGW
Sbjct: 410 RIYNAMKIRGW 420

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score =  579 bits (1494), Expect = 0.0
 Identities = 154/488 (31%), Positives = 220/488 (45%), Gaps = 81/488 (16%)

Query: 1   MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
            + L    +      +       + R +      + +   I +DDGS     G+R QH  
Sbjct: 25  EDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQ 84

Query: 61  ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
            R P KGGIRY  +V  DEV ALA LMT+K AV  +P+GGAK G+  NP+  + +ELE++
Sbjct: 85  HRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKI 144

Query: 121 TRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH----SPAVVTGKPIV 174
           TR FT ++     IG   DVPAPDM T  + M+WI D Y+   GH    + A VTGKPI 
Sbjct: 145 TRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPIS 204

Query: 175 SIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH--------GKSISNMKFAIQ 226
                          GG  GR +ATG GVF   E  + E              +  F +Q
Sbjct: 205 --------------QGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQ 250

Query: 227 GFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 286
           GFGNVG  + ++ H  G K + V +  G+I NP+GID   L  +K  + ++  F      
Sbjct: 251 GFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY 310

Query: 287 DLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILP 346
           +   +L  +CD+L+P A    L K NA  VKAK I E AN PT PEAD+I  ++ ++++P
Sbjct: 311 E-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIP 369

Query: 347 DIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRY----------------------- 383
           D+Y N+GGVTVSYFEW+ N+    +      +E                           
Sbjct: 370 DLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIP 429

Query: 384 ---------------------------MMSAFKDIKTMCQTHN--CNLRMGAFTLGVNRV 414
                                      M  + + I      +N   +LR  A+   + +V
Sbjct: 430 IVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKV 489

Query: 415 AQATLLRG 422
            +     G
Sbjct: 490 FRVYNEAG 497

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score =  447 bits (1152), Expect = e-157
 Identities = 90/400 (22%), Positives = 140/400 (35%), Gaps = 61/400 (15%)

Query: 31  PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRY----HPEVDPDEVNALAQL 86
             +    +    +D+ S          HD   GP  GG R       E   ++   LA+ 
Sbjct: 7   MEKYDYEQLVFCQDEAS--GLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARG 64

Query: 87  MTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTN 146
           MT+K A A +  GG K  I  +P      ++ R    F Q ++      R + A D+GT 
Sbjct: 65  MTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGLNG-----RYITAEDVGTT 119

Query: 147 SQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFA 206
              M  I  E           VTG                   G S      T  GV+  
Sbjct: 120 VDDMDLIHQETD--------YVTGISPA--------------FGSSGNPSPVTAYGVYRG 157

Query: 207 TEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV 264
            +A   E     S+  +  ++QG GNV     K  +  G K+V       A+        
Sbjct: 158 MKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-------- 209

Query: 265 PALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEA 324
                      +    +G +A+  N +    CD+  PCALG VLN      +KAK I  +
Sbjct: 210 ----------SAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGS 259

Query: 325 A-NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRY 383
           A N   DP   + L + G+V  PD   N+GGV     E       + +   +    +   
Sbjct: 260 ADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVADEL------YGYNRTRAMKRVDG- 312

Query: 384 MMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           +  + + I  + +       + A  +   R+A+    R  
Sbjct: 313 IYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKARSQ 352

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score =  439 bits (1132), Expect = e-154
 Identities = 90/379 (23%), Positives = 136/379 (35%), Gaps = 57/379 (15%)

Query: 53  GFRIQHDNARGPMKGGIRYHPEVDPDE----VNALAQLMTWKTAVAAIPYGGAKGGIGCN 108
                     GP  GG R     +  +       LA  MT K AV+ +P GG K  I   
Sbjct: 25  FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84

Query: 109 PRELSMS--ELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
               S+      R+ R+  + I  L G       PD+ TNS  M  + D           
Sbjct: 85  APRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE-------- 134

Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
            V G+ +              + GG+      T +GVF A +A +A  G  S+  +   +
Sbjct: 135 FVFGRSL--------------ERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180

Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 285
           QG G VG   A    E G +++     T  + +   +                   G  A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221

Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
           + L D+L   CDV  PCA+GGV+  E A  +    +  AAN+   D  A +IL  +G++ 
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281

Query: 345 LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRM 404
            PD  AN+GG        +   +   W E  V+      +      +  +          
Sbjct: 282 APDFVANAGGAI-----HLVGREVLGWSESVVHERAVA-IGDTLNQVFEISDNDGVTPDE 335

Query: 405 GAFTLGVNRVAQATLLRGW 423
            A TL   R  +A+     
Sbjct: 336 AARTLAGRRAREASTTTAT 354

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449

 Score =  402 bits (1036), Expect = e-138
 Identities = 125/415 (30%), Positives = 191/415 (46%), Gaps = 30/415 (7%)

Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER ++IP R I+       D+G +    G+R+Q + A GP KGG+R+ P V+   +  L
Sbjct: 48  LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106

Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166

Query: 144 GTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
           G  ++ + ++  +Y K  G     V+TGK                  GGSL R  ATG G
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKAR--------------SFGGSLVRPEATGYG 212

Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
             +  EA++     ++     A+ GFGNV   AAK   E G K V +S   G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272

Query: 263 DVPALLKYKKSNKSLN--------DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAA 314
                + Y    ++          D  G            + D+++PCA    ++ E A 
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332

Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
            + A   K+ IE AN PT  EA   L ++  +V+ P    N+GGV VS FE  QN +   
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392

Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRGW 423
           W  E+V+ +L + M           + +    NL  GA  +G  ++A A + +G 
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470

 Score =  388 bits (1000), Expect = e-132
 Identities = 106/414 (25%), Positives = 175/414 (42%), Gaps = 29/414 (7%)

Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           +E  L  P R I+       D+G       FR+Q+++A GP KGG+R+HP V+   V  L
Sbjct: 71  IET-LSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFL 129

Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +  GG KGG   +P+  S +E+ +  + F  +++  IG   DVPA D+
Sbjct: 130 GFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDI 189

Query: 144 GTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGV 203
           G   + + ++  +Y K        +TGK +                GGS  R  ATG G+
Sbjct: 190 GVGGREIGYLYGQYKKIVNSFNGTLTGKNV--------------KWGGSNLRVEATGYGL 235

Query: 204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID 263
            +    +L      +      + G GNV  +  +       KV+ +SD  G +  PNG  
Sbjct: 236 VYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFT 295

Query: 264 ---VPALLKYKKSNKS-----LNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAAD 315
              +  L+  K+  K      LN                 C +  PCA    ++ + A  
Sbjct: 296 HENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKL 355

Query: 316 VKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
           ++      + E AN P+  +A  +     ++  P   AN+GGV +S  E  QN Q   W 
Sbjct: 356 LQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWT 415

Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHN---CNLRMGAFTLGVNRVAQATLLRGW 423
            E V+ +LK  M + F         +     +L+ GA   G  +VA++ + +G 
Sbjct: 416 RETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456

 Score =  388 bits (999), Expect = e-132
 Identities = 115/413 (27%), Positives = 181/413 (43%), Gaps = 28/413 (6%)

Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LE  +  P R I+       D G      GFR+Q+++  GP KGG+R+HP V+   +  L
Sbjct: 58  LEN-IAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFL 116

Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
                +K ++  +P GG KGG   +P+  S +E+ +  + F   +   IG + DVPA D+
Sbjct: 117 GFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDI 176

Query: 144 GTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGV 203
           G   + + ++  +Y K       V+TGK I                GGS  R  ATG GV
Sbjct: 177 GVGGREIGYLFGQYKKLKNSFEGVLTGKNI--------------KWGGSNIRAEATGYGV 222

Query: 204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID 263
            +  E +L +   ++ N K  + G GNV  +  +   E G  V+ +SD  G I  PNG  
Sbjct: 223 VYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFT 282

Query: 264 VPALLKYKKSNKSLND--------FQGGNAMDLNDLLVHECDVLVPCALGGVLNKENA-- 313
              L        +            +     +        CD+  PCA    +N+ +A  
Sbjct: 283 KEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADL 342

Query: 314 -ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
               K K I+E AN PT  +A   L +  +++ P   AN+GGV VS  E  QN     W 
Sbjct: 343 FIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWT 402

Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRGW 423
            ++ + +L+  M S ++      + +    +L  GA   G  +VA + L +G 
Sbjct: 403 HQETDMKLQNIMKSIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455

>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447

 Score =  363 bits (935), Expect = e-123
 Identities = 120/411 (29%), Positives = 187/411 (45%), Gaps = 26/411 (6%)

Query: 24  LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
           LER L+ P R I+       D   +     +R+Q  +A GP KGG+R+HP V+   +  L
Sbjct: 51  LER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFL 109

Query: 84  AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
               T+K A+  +P GG KGG   +P+  S  E+ R  +    +++  +G   DVPA D+
Sbjct: 110 GFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDI 169

Query: 144 GTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGV 203
           G   + + ++     K   ++  V TGK +                GGSL R  ATG G+
Sbjct: 170 GVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGYGL 215

Query: 204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGID 263
            + TEA+L  HG     M+ ++ G GNV  +A +   E G +V+  SD +G + + +G  
Sbjct: 216 VYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFT 275

Query: 264 VPALLKYK----KSNKSLNDF---QGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
              L +        +  + D+    G   ++         D+ +PCA    L+ + A  +
Sbjct: 276 KEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQL 335

Query: 317 KA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEE 373
            A   K + E AN PT  EA E+  + GV+  P   AN+GGV  S  E  QN     W+ 
Sbjct: 336 IANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKA 395

Query: 374 EKVNHELKRYMMSAFKD-IKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           EKV+  L   M+      ++   +    N   GA   G  +VA A L +G 
Sbjct: 396 EKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 67/397 (16%), Positives = 127/397 (31%), Gaps = 95/397 (23%)

Query: 74  EVD-----PDEVNALAQLMTW------KTAVAA-------IPYGGAKGGIGCNPRELSMS 115
           E+D      D V+   +L  W      +  V         I Y      I    R+ SM 
Sbjct: 50  EIDHIIMSKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 116 ELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVS 175
                TR++ ++   L   + D                   ++K++     V   +P + 
Sbjct: 109 -----TRMYIEQRDRL---YNDNQ----------------VFAKYN-----VSRLQPYLK 139

Query: 176 IKRETEKQRNKNDL-----GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQ--GF 228
           +++   + R   ++      GS G+   T +    A +  L+   K    M F I     
Sbjct: 140 LRQALLELRPAKNVLIDGVLGS-GK---TWV----ALDVCLSY--KVQCKMDFKIFWLNL 189

Query: 229 GNVGSWAA------KFFHEHGGKVVAVSDITGAIK-NPNGID--VPALLKYKKSNKSL-- 277
            N  S         K  ++      + SD +  IK   + I   +  LLK K     L  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 278 ----NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEA 333
                + +  NA +L+      C +L+      V +  +AA      +   +   T  E 
Sbjct: 250 LLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 334 DEILSKK-GVVI--LPDIYANSGG-VTVSYF-EWVQNIQGFMWEE-EKVNHELKRYMMSA 387
             +L K        LP     +     +S   E +++     W+  + VN +    ++ +
Sbjct: 304 KSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIES 361

Query: 388 FKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE 424
             ++    +      R+  F    + +    L   W 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWF 397

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Length = 325

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 27/130 (20%)

Query: 221 MKFAIQGFGNVGSWAAKFFHEHGG-------KVVAVSDITGAIKNPNGIDVPALLKYKKS 273
           ++  + G GNVG    +              KVV VSD          +D+ +++  K+ 
Sbjct: 5   IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYAS-GRNLDISSIISNKEK 63

Query: 274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEA 333
              ++D       DL        D+LV C      +       +   +   A        
Sbjct: 64  TGRISDRAFSGPEDLMG---EAADLLVDC-TPASRDGV-----REYSLYRMA-------- 106

Query: 334 DEILSKKGVV 343
               S   VV
Sbjct: 107 --FESGMNVV 114

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 28/153 (18%)

Query: 206 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP 265
                +     +I     A+ G G VG   A+ F   G KV   +               
Sbjct: 141 TIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGAR-------------- 186

Query: 266 ALLKYKKSNKSLNDFQGGNAMDLNDL--LVHECDVLVPCALGGVLNKENAADVKAK-FII 322
                +    +     G     ++     + + DV +      V+     A++ +  F+I
Sbjct: 187 -----ESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVI 241

Query: 323 EAANHPTDPEADEILSKKGVVI-----LPDIYA 350
           + A+ P   +      K+G+       LP I A
Sbjct: 242 DLASKPGGTD-FRYAEKRGIKALLVPGLPGIVA 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	100.0
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	100.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	100.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	100.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	100.0
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	100.0
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	100.0
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	100.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	100.0
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	100.0
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	100.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	100.0
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	100.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.86
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.74
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.69
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.67
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.61
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.55
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.55
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.53
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.37
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.31
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.29
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.28
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.28
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.27
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.27
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.16
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.14
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.13
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.09
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.04
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.04
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.99
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.99
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.98
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.97
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.97
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.93
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.91
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.89
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.88
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.87
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.86
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.82
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.8
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.79
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.79
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.78
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.77
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.74
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.73
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	96.71
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.7
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.66
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.66
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	96.66
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.66
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.66
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.65
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.65
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.6
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.6
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.59
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.58
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.56
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	96.55
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	96.53
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.5
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.49
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.47
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.4
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.37
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.37
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.36
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.35
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.34
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.33
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.31
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.29
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.29
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.28
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.25
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.19
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.19
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.17
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.15
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.11
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.1
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	96.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.01
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.99
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	95.95
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.93
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.92
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.92
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.82
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.8
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.79
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.78
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.75
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.72
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.7
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.66
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.65
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.65
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.62
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.61
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.6
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.56
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.53
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.52
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.48
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.43
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	95.4
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.37
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.37
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.35
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.25
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.24
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.22
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.21
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.17
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.14
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.12
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.12
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.04
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.04
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.02
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	94.9
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.86
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.83
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.77
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.76
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.69
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.69
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.67
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	94.65
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	94.54
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.48
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.45
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	94.38
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.37
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.34
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.33
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	94.33
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.32
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	94.3
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.27
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	94.23
1ydw_A	362	AX110P-like protein; structural genomics, protein	94.19
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.18
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.15
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.05
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	94.02
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	93.99
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	93.96
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.89
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	93.88
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.88
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	93.87
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	93.85
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	93.84
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	93.77
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	93.75
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.74
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.66
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	93.65
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.63
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	93.62
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	93.56
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.53
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.53
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.5
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.49
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.47
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.46
4had_A	350	Probable oxidoreductase protein; structural genomi	93.44
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	93.43
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	93.39
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	93.35
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	93.3
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	93.29
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	93.22
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.2
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	93.17
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.15
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	93.15
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.13
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.11
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	93.05
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	93.03
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.01
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	93.0
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	92.97
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.96
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.78
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	92.78
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.77
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.76
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	92.76
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	92.74
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	92.68
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	92.66
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.66
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.57
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	92.56
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	92.54
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.51
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.48
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.41
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	92.4
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	92.39
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.32
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.24
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	92.2
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	91.99
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	91.95
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	91.94
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	91.83
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.83
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	91.69
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.59
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.59
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	91.52
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	91.52
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.37
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	91.28
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	91.26
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.24
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.2
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	91.19
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	91.16
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.07
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	91.01
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.0
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	90.79
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	90.74
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	90.68
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.67
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	90.6
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	90.6
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.52
4h3v_A	390	Oxidoreductase domain protein; structural genomics	90.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.38
2duw_A	145	Putative COA-binding protein; ligand binding prote	90.34
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.33
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	90.33
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.33
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.29
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	90.27
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.26
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.13
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	90.12
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	90.1
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	90.06
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	89.95
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	89.9
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	89.9
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.81
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	89.76
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	89.69
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	89.65
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	89.47
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	89.37
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	89.36
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	89.28
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.26
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	89.24
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.98
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	88.93
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.92
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	88.89
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	88.86
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.85
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.84
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.82
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	88.8
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	88.67
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	88.66
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.51
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.46
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	88.42
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	88.35
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	88.2
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.15
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.14
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	88.06
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.04
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	87.99
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	87.92
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	87.91
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	87.8
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	87.75
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	87.74
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	87.72
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.56
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.45
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	87.37
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	87.37
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	86.96
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	86.95
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	86.75
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.55
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.32
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	86.27
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.24
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.2
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	86.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	86.09
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	86.01
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	85.99
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.77
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	85.73
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.7
4hb9_A	412	Similarities with probable monooxygenase; flavin,	85.61
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	85.45
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	85.25
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	84.99
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.88
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	84.83
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	84.81
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	84.8
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	84.75
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	84.66
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	84.45
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	84.44
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	84.43
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	84.37
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	84.33
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	84.33
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	84.32
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	84.27
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	84.14
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	84.11
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	84.49
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	84.05
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	84.03
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.96
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	83.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	83.9
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	83.84
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	83.74
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	83.59
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	83.59
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	83.52
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	83.5
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	83.39
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	83.37
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	83.37
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	83.34
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	83.34
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	83.31
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	83.29
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	83.27
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	83.27
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	83.25
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	83.25
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	83.25
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.21
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	83.19
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	83.18
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	83.17
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	83.16
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	83.06
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	83.05
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	83.04
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	83.04
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	83.03
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	82.97
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.93
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	82.87
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	82.86
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	82.82
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.76
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	82.76
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	82.72
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	82.72
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	82.68
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	82.64
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	82.64
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	82.61
3r8n_K	117	30S ribosomal protein S11; protein biosynthesis, R	82.55
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	82.46
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	82.44
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	82.42
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.36
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	82.36
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	82.3
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.3
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	82.25
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	82.12
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	81.98
3imf_A	257	Short chain dehydrogenase; structural genomics, in	81.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	81.89
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	81.82
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	81.78
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	81.77
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	81.76
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	81.72
1lnq_A	336	MTHK channels, potassium channel related protein;	81.7
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	81.6
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	81.59
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.57
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	81.52
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	81.5
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	81.41
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.41
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	81.4
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	81.31
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	81.26
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	81.24
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	81.19
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	81.16
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	81.11
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	81.1
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	81.05
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	80.9
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	80.89
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	80.85
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	80.84
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	80.83
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	80.82
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.82
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	80.82
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	80.81
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	80.8
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	80.78
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	80.74
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	80.74
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	80.66
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	80.64
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	80.6
3rih_A	293	Short chain dehydrogenase or reductase; structural	80.6
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	80.57
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	80.56
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	80.48
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	80.47
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	80.43
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	80.43
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.37
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.31
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	80.28
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	80.2
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	80.16

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=100.00  E-value=1.4e-129  Score=1000.27  Aligned_cols=407  Identities=43%  Similarity=0.807  Sum_probs=401.6

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ++|++++.||++|+++++++|+++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|++
T Consensus        16 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~vp~~~d~G~~~v~~GyRvqhn~a~GP~kGGiR~~p~v~~~ev~   95 (424)
T 3k92_A           16 NLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVK   95 (424)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEECCCSSSSEECCEEEETTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCeEEEEEEEEEecCCcEEEEEEEEEEECCcCCCCCCCeEecCCCCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||++|||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+|+|++++
T Consensus        96 ~La~~mt~KnAl~~lP~GGgKggi~~DP~~~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~  175 (424)
T 3k92_A           96 ALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLR  175 (424)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463          162 GHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH  240 (424)
Q Consensus       162 g~~-~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~  240 (424)
                      |++ |+++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|+
T Consensus       176 g~~~~~~vTGkp~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~  241 (424)
T 3k92_A          176 EFDSPGFITGKPL--------------VLGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMH  241 (424)
T ss_dssp             TSCCGGGCSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCcceeecccc--------------cCCCcCCCcccHHHHHHHHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHH
Confidence            975 799999999              99999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463          241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF  320 (424)
Q Consensus       241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki  320 (424)
                      +.|+|||+|||++|++|||+|||+++|++++++++++.+|+ ++.++++++|+++||||+|||++++||++||++++||+
T Consensus       242 e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~-a~~~~~~~i~~~~~DIliPcA~~n~I~~~~a~~l~ak~  320 (424)
T 3k92_A          242 DAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLF-TDVITNEELLEKDCDILVPAAISNQITAKNAHNIQASI  320 (424)
T ss_dssp             HHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGC-SCCBCHHHHHHSCCSEEEECSCSSCBCTTTGGGCCCSE
T ss_pred             HCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCC-cEEecCccceeccccEEeecCcccccChhhHhhcCceE
Confidence            99999999999999999999999999999999999999998 77888899999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      |+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++++++++.++++++
T Consensus       321 V~EgAN~p~t~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
T 3k92_A          321 VVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKV  400 (424)
T ss_dssp             EECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEcCCCCCCCHHHHHHHHHCCCEEECchHhcCCCEEeehhHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          401 NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       401 ~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++|+|||++|++||++||+.|||
T Consensus       401 ~~~~aA~~~a~~rva~a~~~~G~  423 (424)
T 3k92_A          401 DMRLAAYMTGIRKSAEASRFRGW  423 (424)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999998

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=100.00  E-value=6.8e-125  Score=969.27  Aligned_cols=407  Identities=29%  Similarity=0.472  Sum_probs=395.1

Q ss_pred             HHHHHHHHHHHHHHHcCCChHH---HHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHH
Q 014463            3 ALTATNRNFRYAARILGLDSKL---ERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDE   79 (424)
Q Consensus         3 ~~~~~~~~~~~a~~~~~~~~~~---~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~e   79 (424)
                      ++|.+..+|+.++.+++++|++   +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|
T Consensus        33 f~qa~~e~~~~~~~~~~~~p~~~~~~~~l~~P~r~i~~~vp~~~D~G~~~v~~GyRvqhn~a~GPakGGiR~~p~v~~~e  112 (456)
T 3r3j_A           33 FLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSV  112 (456)
T ss_dssp             HHHHHHHHHHHTHHHHHHCTHHHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhChHhhHHHHhccCCceEEEEEEEEEeCCCcEEEEEEEEEEECCcCCCccCceEecCCCCHHH
Confidence            6899999999999999999986   8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhh
Q 014463           80 VNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSK  159 (424)
Q Consensus        80 v~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~  159 (424)
                      +++||++|||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||+.||||||+||++++|+||+|+|++
T Consensus       113 v~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~  192 (456)
T 3r3j_A          113 IKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKK  192 (456)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceeEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH
Q 014463          160 FHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF  239 (424)
Q Consensus       160 ~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L  239 (424)
                      +.++.++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|
T Consensus       193 ~~~~~~g~vTGKp~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L  258 (456)
T 3r3j_A          193 LKNSFEGVLTGKNI--------------KWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKL  258 (456)
T ss_dssp             HHTSCCCSCBSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHH
T ss_pred             hcCcccceecCCcc--------------cccCCCCCCcccchHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHH
Confidence            99888999999999              9999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEEEEEcCCCceeCCCCCCHHHHHHH---HHhc-CCcccC----CCCeeecCCcccccccceeeeccccCccccc
Q 014463          240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKY---KKSN-KSLNDF----QGGNAMDLNDLLVHECDVLVPCALGGVLNKE  311 (424)
Q Consensus       240 ~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~---~~~~-g~v~~~----~~~~~i~~~~ll~~~~DIliPaA~~~~It~~  311 (424)
                      ++.|+|||+|||++|+||||+|||+++|..+   ++++ +++.+|    |+++.++++++|+++||||+|||++++||++
T Consensus       259 ~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v~~~~i~~~~~DI~iPcA~~~~I~~~  338 (456)
T 3r3j_A          259 IEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINEN  338 (456)
T ss_dssp             HHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEECSCCGGGSCCSEEEECSCTTCBCHH
T ss_pred             HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEeCCccccccCccEEEeCCCccchhhH
Confidence            9999999999999999999999999999865   4443 456655    7889999999999999999999999999999


Q ss_pred             ccccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHH
Q 014463          312 NAADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAF  388 (424)
Q Consensus       312 na~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~  388 (424)
                      ||+++   +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++|
T Consensus       339 na~~l~~~~ak~V~EgAN~p~T~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~L~~im~~~~  418 (456)
T 3r3j_A          339 DADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIY  418 (456)
T ss_dssp             HHHHHHHHTCCEEECCSSSCBCTTHHHHHHTTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEecCCCCCCHHHHHHHHHCCCEEeChHHhcCCceeeehHHHhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            99999   999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          389 KDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       389 ~~v~~~a~~~~~--~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +++++.++++++  ++|+|||++|++||++||+.||+
T Consensus       419 ~~~~~~a~~~~~~~~~r~aA~i~~~~rva~a~~~~G~  455 (456)
T 3r3j_A          419 EQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG  455 (456)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCHHHhccHHHHHHHHHHHHhcCC
Confidence            999999999988  99999999999999999999997

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=100.00  E-value=4.5e-124  Score=964.18  Aligned_cols=409  Identities=45%  Similarity=0.740  Sum_probs=403.2

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      .++|++++.+|++|+.+++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~G~rvqhn~a~GPakGGiR~~p~v~~~ev  108 (440)
T 3aog_A           29 GGPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEV  108 (440)
T ss_dssp             CTHHHHHHHHHHHHGGGCGGGGGGGGGGGSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCeEEEecCCHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||++|||||||++||||||||||++||+.+|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+|+|+++
T Consensus       109 ~~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~  188 (440)
T 3aog_A          109 MALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMN  188 (440)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH
Q 014463          161 HGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF  239 (424)
Q Consensus       161 ~g~~-~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L  239 (424)
                      +|+. ++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|
T Consensus       189 ~~~~~~g~vTGkp~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L  254 (440)
T 3aog_A          189 VGRTVPGVVTGKPI--------------ALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAF  254 (440)
T ss_dssp             HTSCCGGGSSSCCG--------------GGTCCTTCTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHH
T ss_pred             hCCCCCCeEeccch--------------hhCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHH
Confidence            9974 899999999              9999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccce
Q 014463          240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAK  319 (424)
Q Consensus       240 ~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~ak  319 (424)
                      ++.|+|||+|+|++|++|||+|||+++|++++++++++.+|++++.++++++|+.+||||+|||++|+||.+||++++||
T Consensus       255 ~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~~DIlvPcA~~n~i~~~na~~l~ak  334 (440)
T 3aog_A          255 HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRAR  334 (440)
T ss_dssp             HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCCCSEEEECSSSSCBCTTTGGGCCCS
T ss_pred             HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCCCcEEEecCCcCccchhhHHHcCCc
Confidence            99999999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             EEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014463          320 FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN  399 (424)
Q Consensus       320 iIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~  399 (424)
                      +|+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||+++++|++|+|+++|+++|.++++++++.|++++
T Consensus       335 ~VvEgAN~p~t~eA~~iL~~~GI~~~PD~~aNaGGV~vS~~E~~qN~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~  414 (440)
T 3aog_A          335 IVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKK  414 (440)
T ss_dssp             EEECCSSSCBCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCccccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          400 CNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       400 ~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +++|+|||++|++||++||..|||
T Consensus       415 ~~~~~aA~~~a~~rva~a~~~~G~  438 (440)
T 3aog_A          415 IPLRTAAYVVAATRVLEARALRGL  438 (440)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999997

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-123  Score=957.11  Aligned_cols=404  Identities=37%  Similarity=0.628  Sum_probs=397.5

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ++|++++.+|++|+++++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~hn~~~GPakGGiR~~p~v~~~ev~   92 (419)
T 3aoe_E           13 GLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTA   92 (419)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCHHHHhhcCCCCeEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCeEecCCCCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||++|||||||++||||||||||++||+++|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|++++
T Consensus        93 ~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~  172 (419)
T 3aoe_E           93 GLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTV  172 (419)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCccEEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463          162 GHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH  240 (424)
Q Consensus       162 g~~-~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~  240 (424)
                      |+. ++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|+
T Consensus       173 ~~~~~~~vtGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~  238 (419)
T 3aoe_E          173 GSTVPGVVTGKPH--------------ALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAE  238 (419)
T ss_dssp             TSCCGGGBSSCCG--------------GGTCCSSCSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCCeeeccch--------------hcCCCCCCccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHH
Confidence            974 899999999              99999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463          241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF  320 (424)
Q Consensus       241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki  320 (424)
                      +.|+|||+|||++|++|||+|||+++|.+++++++++.+|    .++++++|+.+||||+|||++|+||.+||++++||+
T Consensus       239 ~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~----~~~~~e~~~~~~DVliP~A~~n~i~~~~A~~l~ak~  314 (419)
T 3aoe_E          239 RLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRL----DLAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQA  314 (419)
T ss_dssp             HTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCC----CBCTTTGGGSSCSEEEECSCTTCBCHHHHTTCCCSE
T ss_pred             HCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCccee----eccchhhhccCceEEEecccccccccchHhhCCceE
Confidence            9999999999999999999999999999999999999888    467889999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      |+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.+++++++++|+++++
T Consensus       315 V~EgAN~p~t~~A~~~L~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~~  394 (419)
T 3aoe_E          315 VVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGL  394 (419)
T ss_dssp             EEECSTTCBCHHHHHHHHHHTCEEECHHHHTCHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCcCCHHHHHHHHHCCCEEECHHHHhCCCchhhHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          401 NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       401 ~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++|+|||++|++||+++|..|||
T Consensus       395 ~~~~aA~~~a~~rv~~a~~~~G~  417 (419)
T 3aoe_E          395 DLRMGALALALERLDEATRLRGV  417 (419)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999997

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=100.00  E-value=9.5e-124  Score=959.98  Aligned_cols=408  Identities=41%  Similarity=0.728  Sum_probs=382.8

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ++|++++.+|++|+++++++|+++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~i~~~~p~~~d~G~~~~~~g~rv~hn~~~GP~kGGiR~~p~v~~~ev~   85 (421)
T 2yfq_A            6 NPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVK   85 (421)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCHHHHHHHSSCSEEEEEEEEEEETTTEEEEEEEEEEECCCSSSSEEEEEEEESSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCHHHHhhccCCceEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCEEeeCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||++|||||||++||||||||||++||+.+|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+|+|++++
T Consensus        86 ~La~~mt~KnAl~~lP~GGgKggi~~dP~~~s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~  165 (421)
T 2yfq_A           86 ALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLN  165 (421)
T ss_dssp             HHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH
Q 014463          162 GHS--PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF  239 (424)
Q Consensus       162 g~~--~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L  239 (424)
                      +++  ++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|
T Consensus       166 ~~~~~~~~vtGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L  231 (421)
T 2yfq_A          166 GERMDIGTFTGKPV--------------AFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNI  231 (421)
T ss_dssp             TTCCCGGGSCSCCG--------------GGTCCTTCTTHHHHHHHHHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHH
T ss_pred             CCCCCCCEEecCch--------------hcCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHH
Confidence            974  799999999              9999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEEEEEcCC-----CceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccc
Q 014463          240 HEHGGKVVAVSDIT-----GAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAA  314 (424)
Q Consensus       240 ~~~GakVVaVsD~~-----G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~  314 (424)
                      ++.|+|||+|||++     |++|||+|||+++|.+++++++++.+|++++.++++++|+++||||+|||++|+||.+||+
T Consensus       232 ~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~~~~~DIliP~A~~n~i~~~~A~  311 (421)
T 2yfq_A          232 ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAK  311 (421)
T ss_dssp             HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---------------------CEEECSCSSCSCHHHHT
T ss_pred             HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchhcCCccEEEEcCCcCcCCcccHH
Confidence            99999999999999     9999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 014463          315 DVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTM  394 (424)
Q Consensus       315 ~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~  394 (424)
                      +++||+|+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||.++++|++|+|+++|+++|.++++++++.
T Consensus       312 ~l~ak~VvEgAN~P~t~ea~~il~~~GI~~~Pd~~aNaGGV~vS~~E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~  391 (421)
T 2yfq_A          312 TINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAV  391 (421)
T ss_dssp             TCCCSEEECCSSSCSCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCeEEEeCCccccCHHHHHHHHHCCCEEEChHHHhCCCeEEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          395 CQTHNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       395 a~~~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      |+++++++|+|||++|++||+++|+.|||
T Consensus       392 A~~~g~~~~~aA~~~a~~rv~~a~~~~G~  420 (421)
T 2yfq_A          392 ADEYNVTLREAVYMYAIKSIDVAMKLRGW  420 (421)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999997

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=100.00  E-value=5.4e-123  Score=962.20  Aligned_cols=408  Identities=39%  Similarity=0.647  Sum_probs=391.6

Q ss_pred             CHHHHHHHHHHHHHHHcCCC------------------hHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCC
Q 014463            2 NALTATNRNFRYAARILGLD------------------SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARG   63 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~------------------~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~G   63 (424)
                      ++++++..+|++|++++...                  +.++++|++|+|+|+|+|||+||||++++|+|||||||+++|
T Consensus         8 ~f~~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~i~~~vp~~~D~G~~~v~~GyRvqhn~a~G   87 (501)
T 3mw9_A            8 NFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRT   87 (501)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHCCCTTCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEECCCSSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhHHHHHHHhCCCeEEEEEEEEEeCCCCEEEeeeEEEEECCCcC
Confidence            57999999999999999742                  788999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHh--hccCCCCccccC
Q 014463           64 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH--DLIGIHRDVPAP  141 (424)
Q Consensus        64 PakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~--~~iG~~~di~ap  141 (424)
                      |+||||||||++|++|+++||++|||||||++||||||||||++||+.+|+.|+||++|+|+++|.  ++|||+.|||||
T Consensus        88 P~kGGiR~hp~v~l~ev~~La~~MT~KnAl~~LP~GGgKGgi~~DPk~~s~~El~r~~r~f~~eL~~~~~IGp~~dipAp  167 (501)
T 3mw9_A           88 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAP  167 (501)
T ss_dssp             SEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHTTSCBTTTEECCB
T ss_pred             CCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCccCCHHHHHHHHHHHHHHHhhccCCCCCeeEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999998  499999999999


Q ss_pred             CCCCCHHHHHHHHHHhhhhhCCC----CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHH------
Q 014463          142 DMGTNSQTMAWILDEYSKFHGHS----PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALL------  211 (424)
Q Consensus       142 Dvgt~~~~m~~i~d~~~~~~g~~----~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~------  211 (424)
                      ||||++++|+||+|+|+++.|+.    ++++||||+              .+|||.+|.++|||||++++++++      
T Consensus       168 DvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~--------------~~GGs~~r~eATg~GV~~~~~~~l~~~~~~  233 (501)
T 3mw9_A          168 DMSTGEREMSWIADTYASTIGHYDINAHACVTGKPI--------------SQGGIHGRISATGRGVFHGIENFINEASYM  233 (501)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcc--------------cccCCCCCCCchHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999873    689999999              999999999999999999999855      


Q ss_pred             HHhCC--CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC
Q 014463          212 AEHGK--SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN  289 (424)
Q Consensus       212 ~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~  289 (424)
                      +.+|.  +++|+||+||||||||+++|++|++.|+|||+|||++|+||||+|||+++|.+++++++++.+||+++.++ +
T Consensus       234 ~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~  312 (501)
T 3mw9_A          234 SILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-G  312 (501)
T ss_dssp             HHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-S
T ss_pred             HHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-c
Confidence            46786  48999999999999999999999999999999999999999999999999999999999999999999885 4


Q ss_pred             cccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhcccc
Q 014463          290 DLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGF  369 (424)
Q Consensus       290 ~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~  369 (424)
                      ++|+++||||+|||++++||++||++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++
T Consensus       313 ~il~~~~DIliPcA~~n~I~~~na~~l~akiV~EgAN~p~T~eA~~iL~~rGIl~~PD~~aNAGGV~vSy~E~~qn~~~~  392 (501)
T 3mw9_A          313 SILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHV  392 (501)
T ss_dssp             CGGGSCCSEEEECSSSCCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCS
T ss_pred             ccccccceEEeeccccCccCHhHHHHcCceEEEeCCCCcCCHHHHHHHHHCCCEEEChHHhcCchHHhhHHHHHhccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             --------------CCCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHcC
Q 014463          370 --------------MWEEEKVNHELKRY------------------------------------MMSAFKDIKTMCQTHN  399 (424)
Q Consensus       370 --------------~w~~e~v~~~l~~~------------------------------------m~~~~~~v~~~a~~~~  399 (424)
                                    +|++++|+++|+++                                    |.+++.++++++++++
T Consensus       393 ~~grl~~~~e~~~~~w~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ga~e~d~v~sgL~~~m~~a~~~v~~~a~~~~  472 (501)
T 3mw9_A          393 SYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYN  472 (501)
T ss_dssp             CTTTTTHHHHHHHHHHHHHHHHHHHHHHSCTTTCCCCCCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccchhhhcccccccHHHHHHHHHhhhcccccccccCchHHHHHHHcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence                          49999999888876                                    9999999999999998


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHcCCC
Q 014463          400 --CNLRMGAFTLGVNRVAQATLLRGWE  424 (424)
Q Consensus       400 --~~~r~aA~~~A~~rv~~a~~~rg~~  424 (424)
                        +++|+|||++|++||+++++.||+.
T Consensus       473 ~~~~lRtAAy~~ai~rv~~a~~~~G~~  499 (501)
T 3mw9_A          473 LGLDLRTAAYVNAIEKVFRVYNEAGVT  499 (501)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence              6999999999999999999999974

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=100.00  E-value=1.2e-121  Score=942.14  Aligned_cols=409  Identities=47%  Similarity=0.800  Sum_probs=401.2

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      .++|++++.+|++|++.++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~~~~~~GpakGGiR~~p~v~~~ev   82 (415)
T 2tmg_A            3 KSLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEV   82 (415)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEEESSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCHHHHHhcCCCCeEEEEEEEEEecCCcEEEEEEEEEEECCCCCCCCCcEEeeCCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||++|||||||++||+|||||||++||+.+|+.|+|+++|+|+++|.+++||+.||||||+||++++|+||+++|+++
T Consensus        83 ~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~  162 (415)
T 2tmg_A           83 KALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMN  162 (415)
T ss_dssp             HHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH
Q 014463          161 HGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF  239 (424)
Q Consensus       161 ~g~~-~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L  239 (424)
                      +|+. ++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|
T Consensus       163 ~~~~~~~~~tGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L  228 (415)
T 2tmg_A          163 VGHTVLGIVTGKPV--------------ELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLI  228 (415)
T ss_dssp             HSSCCCCSCSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHH
T ss_pred             hCCCCCCeEecCch--------------hhCCCCCcCcchHHHHHHHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHH
Confidence            9974 899999999              9999999999999999999999999999999999999999999999999999


Q ss_pred             HH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc
Q 014463          240 HE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA  318 (424)
Q Consensus       240 ~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a  318 (424)
                      ++ +|+|||+|+|++|++|||+|||+++|.+++++++++.+|++++.++++++|+.+||||+|||++|+||++||++++|
T Consensus       229 ~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~~~~DIliP~A~~n~i~~~~a~~l~a  308 (415)
T 2tmg_A          229 SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKA  308 (415)
T ss_dssp             HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTTCSCSEEEECSSTTSBCHHHHTTCCC
T ss_pred             HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhcCCCcEEEecCCcCccCcccHHHcCC
Confidence            99 99999999999999999999999999999999999999999998988999999999999999999999999999999


Q ss_pred             eEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014463          319 KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH  398 (424)
Q Consensus       319 kiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~  398 (424)
                      |+|+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||.++++|++|+|+++|+++|.++++++++.|+++
T Consensus       309 k~V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~s~~E~vqN~~~~~w~~e~v~~~l~~~m~~~~~~v~~~A~~~  388 (415)
T 2tmg_A          309 KAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKY  388 (415)
T ss_dssp             SEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCcccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          399 NCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       399 ~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      ++++|+|||++|++||++||..|||
T Consensus       389 g~~~~~aA~~~a~~rv~~a~~~~G~  413 (415)
T 2tmg_A          389 NVDMRTAAYILAIDRVAYATKKRGI  413 (415)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CcCHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999997

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=100.00  E-value=1.9e-122  Score=955.12  Aligned_cols=408  Identities=25%  Similarity=0.404  Sum_probs=396.6

Q ss_pred             CHHHHHHHHHHHHHHHcCCCh---HHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHH
Q 014463            2 NALTATNRNFRYAARILGLDS---KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD   78 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~---~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~   78 (424)
                      .++|+++.+|+.|+++++++|   +++++|++|+|++.|++||+||||++++|+|||||||+++||+||||||||++|++
T Consensus        45 e~~~~~~~~~~~~~~~~~~~p~~~~~le~l~~Per~i~~~vp~~~D~G~v~v~~Gyrvqhn~a~GPakGGiR~hp~v~~~  124 (470)
T 2bma_A           45 EFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLS  124 (470)
T ss_dssp             HHHHHHHHHHHHTHHHHHHCTTHHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCHH
T ss_pred             hHHHHHHHHHHHHHHHhccChhhhHHHHHhcCCceEEEEEEEEEeCCCCEEEEEEEEEEECCCCCCCCCCeEeeCCCCHH
Confidence            368999999999999999999   79999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhh
Q 014463           79 EVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYS  158 (424)
Q Consensus        79 ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~  158 (424)
                      |+++||++|||||||++||||||||||.+||+++|+.|+|||+|+|+++|.++|||+.||||||+||++++|+||+++|+
T Consensus       125 ev~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~  204 (470)
T 2bma_A          125 IVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYK  204 (470)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcceEEeCCCCcCCHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHH
Q 014463          159 KFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF  238 (424)
Q Consensus       159 ~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~  238 (424)
                      ++.+++.+++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++
T Consensus       205 ~~~~~~~gvvTGKp~--------------~~GGs~~r~~aTg~Gv~~~~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~  270 (470)
T 2bma_A          205 KIVNSFNGTLTGKNV--------------KWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQK  270 (470)
T ss_dssp             HHHCCCSCSSSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHTTTCCGGGCEEEEECSSHHHHHHHHH
T ss_pred             HhcCCcccEEeCCCc--------------cCCCCCCccccchHHHHHHHHHHHHhccCCcCCCEEEEECCcHHHHHHHHH
Confidence            999987799999999              999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCEEEEEEcCCCceeCCCCC---CHHHHHHHHHhc-CCcccCC----CCeeecCCcccccccceeeeccccCcccc
Q 014463          239 FHEHGGKVVAVSDITGAIKNPNGI---DVPALLKYKKSN-KSLNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNK  310 (424)
Q Consensus       239 L~~~GakVVaVsD~~G~i~~~~Gl---Di~~L~~~~~~~-g~v~~~~----~~~~i~~~~ll~~~~DIliPaA~~~~It~  310 (424)
                      |++.|+|||+|||++|+||||+||   |++.|+++++++ +++.+|+    +++.++++++|+++||||+|||++++||+
T Consensus       271 L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~~~~~~~~DI~iPcA~~~~I~~  350 (470)
T 2bma_A          271 LLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDL  350 (470)
T ss_dssp             HHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSCCTTSSCCSEEEECSSTTCBCS
T ss_pred             HHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCcCeeecCccEEEeccccCcCCH
Confidence            999999999999999999999999   666777888775 6888874    67888889999999999999999999999


Q ss_pred             cccccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHH
Q 014463          311 ENAADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSA  387 (424)
Q Consensus       311 ~na~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~  387 (424)
                      +||+++   +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.++
T Consensus       351 ~na~~l~~~~ak~V~EgAN~p~T~eA~~~L~~rGIl~~PD~~aNAGGV~~S~~E~~qn~~~~~w~~eev~~~L~~im~~~  430 (470)
T 2bma_A          351 DQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNI  430 (470)
T ss_dssp             HHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcEEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhhCCCceeeHHHhhccccccCCCHHHHHHHHHHHHHHH
Confidence            999999   99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          388 FKDIKTMCQTHNC---NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       388 ~~~v~~~a~~~~~---~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      |+++++.++++++   ++|+|||+.|++||++||..|||
T Consensus       431 ~~~~~~~a~~~~~~~~~~r~~A~i~~~~rva~am~~~G~  469 (470)
T 2bma_A          431 FIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC  469 (470)
T ss_dssp             HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999   99999999999999999999997

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=1.4e-122  Score=949.96  Aligned_cols=409  Identities=39%  Similarity=0.670  Sum_probs=401.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      +++|+.++.+|++++..++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~r~i~v~~p~~~D~G~~~~~~G~rv~~~~~~GpakGG~R~~p~v~~~ev   83 (421)
T 1v9l_A            4 TGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADD   83 (421)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEECSSSSEEEEEECCTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCHHHHHhccCCceEEEEEEEEEecCCcEEEEEEEEeecCCcCCCccccEEecCCCCHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||++|||||||++||+|||||||++||+.+|+.|+|+++|+|+++|.+++||+.||||||+||++++|+||+++|+++
T Consensus        84 ~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~~~~m~~~~~~y~~~  163 (421)
T 1v9l_A           84 VALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKI  163 (421)
T ss_dssp             HHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-CceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH
Q 014463          161 HGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF  239 (424)
Q Consensus       161 ~g~~-~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L  239 (424)
                      +|+. ++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||++++++|
T Consensus       164 ~~~~~~~~~tGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L  229 (421)
T 1v9l_A          164 KGYNVPGVFTSKPP--------------ELWGNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWL  229 (421)
T ss_dssp             HTSCCGGGSCSCCS--------------SSSCCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             hCCCCCCeEeccch--------------hhCCCCCcccchHHHHHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHH
Confidence            9974 899999999              9999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC--cccCCCC---eee-cCCcccccccceeeeccccCccccccc
Q 014463          240 HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS--LNDFQGG---NAM-DLNDLLVHECDVLVPCALGGVLNKENA  313 (424)
Q Consensus       240 ~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~--v~~~~~~---~~i-~~~~ll~~~~DIliPaA~~~~It~~na  313 (424)
                      ++.|+|||+|+|++|++|||+|||+++|.++++++++  +.+|+++   +.+ +++++|+++||||+|||++++||++||
T Consensus       230 ~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~~~Dil~P~A~~~~I~~~~a  309 (421)
T 1v9l_A          230 EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNA  309 (421)
T ss_dssp             HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTT
T ss_pred             HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcCCccEEEecCcCCccchhhH
Confidence            9999999999999999999999999999999998888  9999876   778 889999999999999999999999999


Q ss_pred             ccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 014463          314 ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKT  393 (424)
Q Consensus       314 ~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~  393 (424)
                      ++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||++++.|++|+|+++|+++|.++++++++
T Consensus       310 ~~l~ak~V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~  389 (421)
T 1v9l_A          310 GLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYK  389 (421)
T ss_dssp             TTCCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCceEEEecCCCcCCHHHHHHHHHCCCEEeChHHhhCCCeeeeHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HcCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          394 MCQ-THNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       394 ~a~-~~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      .|+ ++++++|+|||++|++||+++|+.|||
T Consensus       390 ~a~~~~~~~~~~aA~~~a~~rv~~a~~~~G~  420 (421)
T 1v9l_A          390 RWQREKGWTMRDAAIVTALERIYNAMKIRGW  420 (421)
T ss_dssp             HHTTSSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            999 999999999999999999999999997

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=100.00  E-value=9.3e-121  Score=939.18  Aligned_cols=406  Identities=30%  Similarity=0.467  Sum_probs=382.8

Q ss_pred             HHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHH
Q 014463            4 LTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD   78 (424)
Q Consensus         4 ~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~   78 (424)
                      +|.+...++.-..++.-+|+     ++++|.+|+|+|+|+|||+||||++++|+|||||||+++||+||||||||++|++
T Consensus        28 ~qa~~e~~~~l~~~~~~~p~y~~~~~~e~l~~PeR~i~~~vp~~~D~G~~~v~~GyRvqhn~alGP~kGG~Rfhp~v~l~  107 (450)
T 4fcc_A           28 AQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLS  107 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGTSTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhhhhhHHHHHhCCceEEEEEEEEEECCCcEEEEEEEEEEECCCCCCCCCceEecCCCCHH
Confidence            34444445555556665665     5889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhh
Q 014463           79 EVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYS  158 (424)
Q Consensus        79 ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~  158 (424)
                      |+++||++|||||||++||||||||||++||+++|+.|++|++|+|+++|.++|||+.|||+||+||++++|+||+++|+
T Consensus       108 ev~~La~~mT~KnAl~gLP~GGgKggi~~DPk~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~  187 (450)
T 4fcc_A          108 ILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMK  187 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCceEEecCCCcCCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHH
Q 014463          159 KFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF  238 (424)
Q Consensus       159 ~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~  238 (424)
                      ++.+.+++++||||+              .+|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+++|++
T Consensus       188 ~~~~~~~~v~TGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~  253 (450)
T 4fcc_A          188 KLSNNTACVFTGKGL--------------SFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEK  253 (450)
T ss_dssp             HHHTCCSCCCSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHH
T ss_pred             hccCCCceeecCCCc--------------ccCCCCCCCCceeeeHHHHHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHH
Confidence            999888999999999              999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh----cCCcccCC---CCeeecCCcccccccceeeeccccCccccc
Q 014463          239 FHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS----NKSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNKE  311 (424)
Q Consensus       239 L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~----~g~v~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~~  311 (424)
                      |++.|+|||+++|++|++|||+|||+++|.++++.    .+.+.+|+   +++.++++++|+++||||+|||++++||++
T Consensus       254 L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl~~~I~~~  333 (450)
T 4fcc_A          254 AMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVD  333 (450)
T ss_dssp             HHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSCTTCBCHH
T ss_pred             HHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEecCcccccCCccEEeeccccccccHH
Confidence            99999999999999999999999999999887753    34555553   677899999999999999999999999999


Q ss_pred             cccccc---ceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHH
Q 014463          312 NAADVK---AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAF  388 (424)
Q Consensus       312 na~~i~---akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~  388 (424)
                      ||++++   ||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++|+|+++|+++|.+++
T Consensus       334 ~a~~L~a~g~k~IaEgAN~p~t~eA~~iL~~rGIl~~PD~~aNAGGVi~S~~E~~qn~~~~~w~~eeV~~kL~~im~~~~  413 (450)
T 4fcc_A          334 AAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIH  413 (450)
T ss_dssp             HHHHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCceEEecCCCCCCCHHHHHHHHHCCCEEEChHHhcCccHhhhHHHHhhhcccCCCCHHHHHHHHHHHHHHHH
Confidence            999997   49999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          389 KDIKTMCQT-HNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       389 ~~v~~~a~~-~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +++++.+++ +.+++|+|||++|++||++||+.|||
T Consensus       414 ~~~~~~~~e~~~~~~~~aA~i~a~~rVa~Am~~~G~  449 (450)
T 4fcc_A          414 HACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV  449 (450)
T ss_dssp             HHHHHTSCSSSSCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            999998865 56899999999999999999999997

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=100.00  E-value=7.6e-119  Score=927.31  Aligned_cols=408  Identities=30%  Similarity=0.499  Sum_probs=397.6

Q ss_pred             CHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCC
Q 014463            2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD   76 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t   76 (424)
                      +++|+++.+|++|+++++++|+     ++++|++|+|++.|++||+||||++++|+|||||||+++||+||||||||++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Per~i~~~vp~~~d~G~~~v~~G~rv~hn~~~GPakGGlR~~p~v~   99 (449)
T 1bgv_A           20 EFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVN   99 (449)
T ss_dssp             HHHHHHHHHHHTTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCC
T ss_pred             cHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEeCCCCEEEEeEEEEEEcCCcCCCCCCeeecCCCC
Confidence            4789999999999999999999     89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHH
Q 014463           77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE  156 (424)
Q Consensus        77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~  156 (424)
                      ++|+++||++|||||||++||+|||||||++||+.+|+.|+||++|+|+++|.++|||+.||||||+||++++|+||+++
T Consensus       100 ~~ev~~La~~mt~KnAl~~lP~GGgKGGi~~dP~~~s~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~  179 (449)
T 1bgv_A          100 LSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQ  179 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccEEEECCCccCCHHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCC-CCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHH
Q 014463          157 YSKFHGH-SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWA  235 (424)
Q Consensus       157 ~~~~~g~-~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~  235 (424)
                      |+++.++ .++++||||+              .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++
T Consensus       180 y~~~~~~~~~g~~tGk~~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~G~~l~g~~v~VqG~GnVG~~~  245 (449)
T 1bgv_A          180 YRKIVGGFYNGVLTGKAR--------------SFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGA  245 (449)
T ss_dssp             HHHHHTSCCGGGSSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHH
T ss_pred             HHHhcCCCcCceEecCCc--------------ccCCCCCcccchhHHHHHHHHHHHHHccCCcCCCEEEEECCCHHHHHH
Confidence            9999886 4799999999              999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCEEEEEEcCCCceeCCCCC----CHHHHHHHHHhc-CCcccCCC---CeeecCCcccccccceeeeccccCc
Q 014463          236 AKFFHEHGGKVVAVSDITGAIKNPNGI----DVPALLKYKKSN-KSLNDFQG---GNAMDLNDLLVHECDVLVPCALGGV  307 (424)
Q Consensus       236 a~~L~~~GakVVaVsD~~G~i~~~~Gl----Di~~L~~~~~~~-g~v~~~~~---~~~i~~~~ll~~~~DIliPaA~~~~  307 (424)
                      +++|++.|+|||+|||++|++|||+||    |+++|+++++++ +++.+|+.   ++.++++++|+++||||+|||++++
T Consensus       246 a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~~~e~~~~~~Dil~P~A~~~~  325 (449)
T 1bgv_A          246 AKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQND  325 (449)
T ss_dssp             HHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCSCTTC
T ss_pred             HHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeCchhhhcCCcceeeccccccc
Confidence            999999999999999999999999999    888999999886 78988875   7888888999999999999999999


Q ss_pred             ccccccccccc---eEEEecCCCCCCHHHHHHHHhC-CceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHH
Q 014463          308 LNKENAADVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRY  383 (424)
Q Consensus       308 It~~na~~i~a---kiIvEgAN~p~t~eA~~iL~~r-GI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~  383 (424)
                      ||.+||++++|   |+|+||||+|+||+|+++|++| ||+|+||+++|||||++|||||+||++++.|++++|+++|+++
T Consensus       326 I~~~na~~l~a~g~kiV~EgAN~p~T~eA~~~l~~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~L~~~  405 (449)
T 1bgv_A          326 VDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQV  405 (449)
T ss_dssp             BCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             cchhhHHHHHhcCCeEEEeCCCCcCCHHHHHHHHHcCCEEEEChHHhcCCCceeehhhhhcccccccccHHHHHHHHHHH
Confidence            99999999987   9999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHcCC
Q 014463          384 MMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       384 m~~~~~~v~~~a~~~~~--~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      |.++++.+++.++++++  ++|+|||+.|++||++||+.|||
T Consensus       406 m~~~~~~v~~~a~~~~~~~~~~~~A~i~~~~rv~~a~~~~G~  447 (449)
T 1bgv_A          406 MTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI  447 (449)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHhhHHHHHHHHHHHHhcCc
Confidence            99999999999999999  99999999999999999999996

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=100.00  E-value=5e-108  Score=844.94  Aligned_cols=409  Identities=45%  Similarity=0.755  Sum_probs=400.3

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      .++|++++.+|++|++.++++|++++.|++|+|+++|++||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~G~~~~~~g~rv~~~~~~Gp~kGG~R~~~~~~~~ev   82 (419)
T 1gtm_A            3 ADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTV   82 (419)
T ss_dssp             CTHHHHHHHHHHHHGGGSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCCChhhhhcCCCCceEEEEEEEEEecCCCEEEEEEEEEEECCCCCCCcCCEEeeCCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||++|||||||++||+|||||||++||+.+|+.|+||++|+|+++|.+++||+.||||||+||++++|+||+++|+++
T Consensus        83 ~~La~~mt~Knal~~lp~GG~Kggi~~dP~~~s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~~~~m~~~~~~y~~~  162 (419)
T 1gtm_A           83 KALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETI  162 (419)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-C--ceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHH
Q 014463          161 HGHS-P--AVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAA  236 (424)
Q Consensus       161 ~g~~-~--~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~-l~g~~vaIqGfGnVG~~~a  236 (424)
                      +|+. +  +++||||+              .+|||.+|.++|||||+++++++++.+|.+ ++|+||+||||||||+.+|
T Consensus       163 ~~~~~~~~~~~tGk~~--------------~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA  228 (419)
T 1gtm_A          163 SRRKTPAFGIITGKPL--------------SIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLA  228 (419)
T ss_dssp             HTTSSCGGGGCSSCCG--------------GGTCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHH
T ss_pred             hCCCCCccceEecCcc--------------hhCCCCCCCcchhhHHHHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHH
Confidence            9984 7  89999999              999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCccccccccc
Q 014463          237 KFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAAD  315 (424)
Q Consensus       237 ~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~  315 (424)
                      ++|++ .|++|++++|+++.+|+++|+|+++|+++++..+++..||..+.+++++++..+||||||||.+++||+++++.
T Consensus       229 ~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~l~~l~~t~~i~~~~l~~mk~dilIn~ArG~~Vde~a~~a  308 (419)
T 1gtm_A          229 KIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADN  308 (419)
T ss_dssp             HHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTGGGG
T ss_pred             HHHHHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCEeecCccCeeeCHHHHHhCCCCEEEECCCcccCCHHHHHH
Confidence            99999 99999999999999999999999999999988788888988778888889999999999999999999999999


Q ss_pred             ccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 014463          316 VKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMC  395 (424)
Q Consensus       316 i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a  395 (424)
                      ++++.|+|+||.|+||+++.+|..+||++.||+++|+|||++||+||+||+++++|+.+++.++|+++|.+++.++++.|
T Consensus       309 L~~~~I~~aAneP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~~a  388 (419)
T 1gtm_A          309 IKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIA  388 (419)
T ss_dssp             CCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeCCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          396 QTHNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       396 ~~~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +++++++|+|||++|++||+++|..|||
T Consensus       389 ~~~~~~~~~aA~~~a~~rv~~a~~~~g~  416 (419)
T 1gtm_A          389 KEKNIHMRDAAYVVAVQRVYQAMLDRGW  416 (419)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999997

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=100.00  E-value=4.7e-89  Score=689.35  Aligned_cols=336  Identities=28%  Similarity=0.397  Sum_probs=311.3

Q ss_pred             cCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCceeE
Q 014463           29 LIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVAAIPYGGAKGG  104 (424)
Q Consensus        29 ~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~----ev~~LA~~Mt~K~Al~~lp~GGaKgg  104 (424)
                      ..|++++.++-|.       ..|+|||||||+++||+||||||||++|.+    |+++||++|||||||++|||||||||
T Consensus         8 ~~~e~v~~~~d~~-------~~~~~~~~~h~~~~GP~kGG~R~~p~v~~~~~~~ev~~La~~mt~K~al~~lp~GG~Kgg   80 (355)
T 1c1d_A            8 WDGEMTVTRFDAM-------TGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSV   80 (355)
T ss_dssp             CCSSEEEEEEETT-------TTEEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred             CCccEEEEEEccc-------cceEEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhhCCCCCCceee
Confidence            4799999988764       469999999999999999999999999866    89999999999999999999999999


Q ss_pred             Eec-CCCC-CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhh
Q 014463          105 IGC-NPRE-LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEK  182 (424)
Q Consensus       105 I~~-dP~~-~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~  182 (424)
                      |.+ ||+. +|..|+|+++|+|.++|.+++|+  ||||||+||++++|+||+++|+        ++||||+         
T Consensus        81 i~~~dP~~~~s~~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~--------~~tGk~~---------  141 (355)
T 1c1d_A           81 IALPAPRHSIDPSTWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTE--------FVFGRSL---------  141 (355)
T ss_dssp             EECSSCGGGCCHHHHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCS--------CBCCCCG---------
T ss_pred             EeccCcccccChhhHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcC--------eeeccch---------
Confidence            999 9999 99999999999999999999997  5999999999999999999986        5899999         


Q ss_pred             hhccccCCCCCCCCchhHHHHHHHHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCC
Q 014463          183 QRNKNDLGGSLGREAATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG  261 (424)
Q Consensus       183 ~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~G  261 (424)
                           .+|||.+|.++|||||++++++++++.|. +++|+||+||||||||+++|++|++.|+||| ++|++        
T Consensus       142 -----~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVv-vsD~~--------  207 (355)
T 1c1d_A          142 -----ERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTD--------  207 (355)
T ss_dssp             -----GGTSCCCCHHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC--------
T ss_pred             -----hhCCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEeCC--------
Confidence                 99999999999999999999999999998 7999999999999999999999999999999 99974        


Q ss_pred             CCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCH-HHHHHHHhC
Q 014463          262 IDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDP-EADEILSKK  340 (424)
Q Consensus       262 lDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~-eA~~iL~~r  340 (424)
                        ... .++.++      | +++.++++++|+.+||||+|||+++.||++|++.++|++|+|+||+|+|+ +|+++|+++
T Consensus       208 --~~~-~~~a~~------~-ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~~~lk~~iVie~AN~p~t~~eA~~~L~~~  277 (355)
T 1c1d_A          208 --TER-VAHAVA------L-GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHAR  277 (355)
T ss_dssp             --HHH-HHHHHH------T-TCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHT
T ss_pred             --ccH-HHHHHh------c-CCEEeChHHhhcCccceecHhHHHhhcCHHHHhhCCCCEEEECCCCCCCCHHHHHHHHhC
Confidence              233 334433      2 46667778999999999999999999999999999999999999999884 999999999


Q ss_pred             CceEeccccccccCcchhh-HHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014463          341 GVVILPDIYANSGGVTVSY-FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL  419 (424)
Q Consensus       341 GI~viPD~laNaGGVi~s~-~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~  419 (424)
                      ||+++||+++|+|||++|| |||      +.|++|+|+++|+++| +++++|++.|+++++++|+|||++|++||++||.
T Consensus       278 gIlv~Pd~~aNaGGV~~s~~~E~------~~w~~e~v~~~l~~i~-~~~~~i~~~~~~~~~~~~~aA~~~a~~rv~~a~~  350 (355)
T 1c1d_A          278 GILYAPDFVANAGGAIHLVGREV------LGWSESVVHERAVAIG-DTLNQVFEISDNDGVTPDEAARTLAGRRAREAST  350 (355)
T ss_dssp             TCEECCHHHHTTHHHHHHHHHHT------TCCCHHHHHHHHHTHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC-
T ss_pred             CEEEECCeEEcCCCeeeeeeehh------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999 999      5799999999999987 8999999999999999999999999999999987


Q ss_pred             Hc
Q 014463          420 LR  421 (424)
Q Consensus       420 ~r  421 (424)
                      .+
T Consensus       351 ~~  352 (355)
T 1c1d_A          351 TT  352 (355)
T ss_dssp             --
T ss_pred             hc
Confidence            65

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=5.2e-85  Score=662.84  Aligned_cols=336  Identities=26%  Similarity=0.365  Sum_probs=311.9

Q ss_pred             cCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCceeE
Q 014463           29 LIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVAAIPYGGAKGG  104 (424)
Q Consensus        29 ~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~----ev~~LA~~Mt~K~Al~~lp~GGaKgg  104 (424)
                      ..|++++.++-|.       ..|+|||||||+++||+||||||||++|.+    |+++||++|||||||++|||||||||
T Consensus        10 ~~~e~v~~~~d~~-------~~~~~~~~~h~~~~Gp~kGG~R~~p~v~~~~~~~e~~~La~~mt~K~al~~lp~GG~Kgg   82 (364)
T 1leh_A           10 YDYEQLVFCQDEA-------SGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTV   82 (364)
T ss_dssp             HTCCEEEEEEETT-------TTEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred             cCCeEEEEEEccC-------cceEEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcCcceE
Confidence            4599999988643       469999999999999999999999999876    89999999999999999999999999


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhh
Q 014463          105 IGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQR  184 (424)
Q Consensus       105 I~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~  184 (424)
                      |.+||+.++.   |+++|+|.+++.+++|+  ||||||+||++++|+||+++|+        ++||||+           
T Consensus        83 i~~dP~~~~~---~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~~~m~~l~~~~~--------~~tGK~~-----------  138 (364)
T 1leh_A           83 IIGDPFADKN---EDMFRALGRFIQGLNGR--YITAEDVGTTVDDMDLIHQETD--------YVTGISP-----------  138 (364)
T ss_dssp             EESCTTTTCC---HHHHHHHHHHHHTTTTS--EEBCBCTTCCHHHHHHHHTTCS--------CBCSCCH-----------
T ss_pred             EeCCCCCCCH---HHHHHHHHHHHHHhcCc--eEEcccCCCCHHHHHHHHHhcc--------hhccccc-----------
Confidence            9999999764   67999999999999998  4999999999999999999986        5899999           


Q ss_pred             ccccCCCCCCCCchhHHHHHHHHHHHHHH-hCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCC
Q 014463          185 NKNDLGGSLGREAATGLGVFFATEALLAE-HGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI  262 (424)
Q Consensus       185 ~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~-~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~Gl  262 (424)
                         .+|||.+|.++||+||++++++++++ +|. +++|++|+|||+||||+++|+.|++.|++|+ ++|.          
T Consensus       139 ---~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVv-v~D~----------  204 (364)
T 1leh_A          139 ---AFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV-VTDV----------  204 (364)
T ss_dssp             ---HHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------
T ss_pred             ---ccCCCCCcccchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHCCCEEE-EEcC----------
Confidence               99999999999999999999999996 586 7999999999999999999999999999999 9985          


Q ss_pred             CHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCC-HHHHHHHHhCC
Q 014463          263 DVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTD-PEADEILSKKG  341 (424)
Q Consensus       263 Di~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~eA~~iL~~rG  341 (424)
                      |.+++.++.++.       +++.++.++++..+|||++||+.+++||.+|++.++|++|+|+||+|+| +++.++|+++|
T Consensus       205 ~~~~l~~~a~~~-------ga~~v~~~~ll~~~~DIvip~a~~~~I~~~~~~~lg~~iV~e~An~p~t~~ea~~~L~~~G  277 (364)
T 1leh_A          205 NKAAVSAAVAEE-------GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELG  277 (364)
T ss_dssp             CHHHHHHHHHHH-------CCEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHc-------CCEEEChHHHhccCCcEeeccchHHHhCHHHHHhCCCcEEEeCCCCCcccHHHHHHHHhCC
Confidence            567777776653       3556777889999999999999999999999999999999999999987 59999999999


Q ss_pred             ceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHc
Q 014463          342 VVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLR  421 (424)
Q Consensus       342 I~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~r  421 (424)
                      |+++||+++|+|||++|||||      +.|++|+|+++|+++| +++++|++.++++++++|+|||.+|++||+++++.|
T Consensus       278 i~~~Pd~~~NaGGv~~s~~E~------~~~~~e~v~~~l~~i~-~~~~~i~~~~~~~~~~~~~aA~~~a~~ri~~a~~~~  350 (364)
T 1leh_A          278 IVYAPDYVINAGGVINVADEL------YGYNRTRAMKRVDGIY-DSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKAR  350 (364)
T ss_dssp             CEECCHHHHTTHHHHHHHHGG------GCCCHHHHHHHHTHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEecceeecCCceEEEEEee------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999      5799999999999987 889999999999999999999999999999999999


Q ss_pred             CC
Q 014463          422 GW  423 (424)
Q Consensus       422 g~  423 (424)
                      ||
T Consensus       351 ~~  352 (364)
T 1leh_A          351 SQ  352 (364)
T ss_dssp             CS
T ss_pred             Cc
Confidence            95

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.86  E-value=0.00014  Score=73.74  Aligned_cols=125  Identities=21%  Similarity=0.300  Sum_probs=89.4

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      .+++-.++..+..+.++++.++.|+||.|+|+|++|+.+|+.|...|++|+ +.|.+.          ..     ...  
T Consensus        93 ~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~-~~d~~~----------~~-----~~~--  154 (380)
T 2o4c_A           93 RGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVL-VCDPPR----------QA-----REP--  154 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEE-EECHHH----------HH-----HST--
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEE-EEcCCh----------hh-----hcc--
Confidence            577888888888888889999999999999999999999999999999998 344310          10     011  


Q ss_pred             cccCCCCeeecCCcccccccceeeecc---------ccCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCceE
Q 014463          277 LNDFQGGNAMDLNDLLVHECDVLVPCA---------LGGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVVI  344 (424)
Q Consensus       277 v~~~~~~~~i~~~~ll~~~~DIliPaA---------~~~~It~~na~~i~a-kiIvEgAN~p~-t~eA-~~iL~~rGI~v  344 (424)
                           +....+.++++. +|||++.|.         ..+.|+++....++. .+++..+.+++ +.++ .+.|++++|.-
T Consensus       155 -----g~~~~~l~ell~-~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~  228 (380)
T 2o4c_A          155 -----DGEFVSLERLLA-EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLE  228 (380)
T ss_dssp             -----TSCCCCHHHHHH-HCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEE
T ss_pred             -----CcccCCHHHHHH-hCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCce
Confidence                 111123345554 899999986         345577666666653 58888998874 5443 46788888764


Q ss_pred             e
Q 014463          345 L  345 (424)
Q Consensus       345 i  345 (424)
                      .
T Consensus       229 A  229 (380)
T 2o4c_A          229 V  229 (380)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.74  E-value=5.9e-05  Score=74.96  Aligned_cols=173  Identities=15%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      +-.+|+|.|+|+||+.+++.|.+       .+.+|++|+|++...++++ +|+++..+.+++.+.+..+   . .+.+++
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~-idl~~~~~~~~~~g~~~~~---~-~d~~e~   77 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRN-LDISSIISNKEKTGRISDR---A-FSGPED   77 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSS-CCHHHHHHHHHHHSCSCSS---B-CCSGGG
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccc-cCHHHHHHHhhhcCCCCcc---c-CCHHHH
Confidence            44689999999999999999976       3679999999999999998 9998887766655544332   1 244555


Q ss_pred             c-ccccceeeeccccCccc---cccccc-c--cceEEEecCCC-CCCHHHH---HHHHhCCceEecccccccc-Ccchhh
Q 014463          292 L-VHECDVLVPCALGGVLN---KENAAD-V--KAKFIIEAANH-PTDPEAD---EILSKKGVVILPDIYANSG-GVTVSY  359 (424)
Q Consensus       292 l-~~~~DIliPaA~~~~It---~~na~~-i--~akiIvEgAN~-p~t~eA~---~iL~~rGI~viPD~laNaG-GVi~s~  359 (424)
                      + +.++||++.|.-.....   .+.+.. +  +..+|++  |- +++.+.+   +..+++|+.+.=.-...+| .++..-
T Consensus        78 l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta--NK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l  155 (325)
T 3ing_A           78 LMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA--NKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVL  155 (325)
T ss_dssp             GTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC--CCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHH
T ss_pred             hcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc--CchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHH
Confidence            5 45899999997644221   122222 2  3445553  22 2333333   3446778865433222222 122222


Q ss_pred             HHHhhhc-----cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          360 FEWVQNI-----QG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       360 ~E~~qn~-----~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      .|++..-     .+ +.=+-.-+..++++  ...|.+++..|++.|.
T Consensus       156 ~~~l~g~~I~~i~Gi~nGT~nyil~~m~~--g~~f~~~l~~Aq~~Gy  200 (325)
T 3ing_A          156 DYSILPSKVKRFRGIVSSTINYVIRNMAN--GRSLRDVVDDAIKKGI  200 (325)
T ss_dssp             HHTCTTCCEEEEEEECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTC
T ss_pred             HHHhhCCCeeEEEEEEEeeeeEEeecccC--CCCHHHHHHHHHHcCC
Confidence            3333210     00 00022334455532  4578999999999886

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.72  E-value=0.00011  Score=74.69  Aligned_cols=123  Identities=23%  Similarity=0.253  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCC---CCHHHHHHHHHhcC
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG---IDVPALLKYKKSNK  275 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~G---lDi~~L~~~~~~~g  275 (424)
                      |+-=+..++..+++..|+++++.||+|.|.|.+|..+|++|...|++=|-++|++|-++....   |+  .+.+...+..
T Consensus       171 TasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~--~~k~~~A~~~  248 (388)
T 1vl6_A          171 TAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLN--EYHLEIARIT  248 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSS--HHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccC--HHHHHHHHhh
Confidence            444444556666777788999999999999999999999999999943449999999987542   44  3333333221


Q ss_pred             CcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCCCC
Q 014463          276 SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHPT  329 (424)
Q Consensus       276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~  329 (424)
                      .  .+..  .-+-.+.+ ..+||||=+.-++.+|++-+++.+- .+|.+-|| |+
T Consensus       249 ~--~~~~--~~~L~eav-~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSN-Pt  297 (388)
T 1vl6_A          249 N--PERL--SGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALAN-PV  297 (388)
T ss_dssp             C--TTCC--CSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS-SS
T ss_pred             h--ccCc--hhhHHHHH-ccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCC-CC
Confidence            1  1100  00112222 2479999988899999999988743 39999999 54

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.69  E-value=0.00017  Score=74.52  Aligned_cols=96  Identities=17%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463          213 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL  292 (424)
Q Consensus       213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll  292 (424)
                      ..+..+.|++|+|+|+|++|+.+|+.+...|++|+ ++|.+          .....+....        +.+.++-++++
T Consensus       240 atg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Vi-v~d~d----------p~~a~~A~~~--------G~~vv~LeElL  300 (464)
T 3n58_A          240 GTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVK-VTEVD----------PICALQAAMD--------GFEVVTLDDAA  300 (464)
T ss_dssp             HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHT--------TCEECCHHHHG
T ss_pred             hcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEeCC----------cchhhHHHhc--------CceeccHHHHH
Confidence            56888999999999999999999999999999988 66653          2222221111        22333445555


Q ss_pred             ccccceeeeccc-cCccccccccccc-ceEEEecCCCC
Q 014463          293 VHECDVLVPCAL-GGVLNKENAADVK-AKFIIEAANHP  328 (424)
Q Consensus       293 ~~~~DIliPaA~-~~~It~~na~~i~-akiIvEgAN~p  328 (424)
                      . .+||++.|.- .+.|+.+....++ --+|+.-+.+.
T Consensus       301 ~-~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          301 S-TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             G-GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             h-hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            4 7999999863 4577877776664 34666666655

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.67  E-value=0.00084  Score=63.83  Aligned_cols=134  Identities=17%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             HHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC
Q 014463          209 ALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL  288 (424)
Q Consensus       209 ~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~  288 (424)
                      .++++.+.+++| ++.|.|.|++|+.+++.|.+.|++|+ |+|.+          .++..+..++.+.       ..-+.
T Consensus       106 ~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~-v~~r~----------~~~~~~l~~~~~~-------~~~~~  166 (263)
T 2d5c_A          106 EALKAGGIPLKG-PALVLGAGGAGRAVAFALREAGLEVW-VWNRT----------PQRALALAEEFGL-------RAVPL  166 (263)
T ss_dssp             HHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHHTC-------EECCG
T ss_pred             HHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHHhcc-------chhhH
Confidence            335566788999 99999999999999999999999654 77764          3344444333221       11122


Q ss_pred             CcccccccceeeeccccCccc--cc--cccccc-ceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHh
Q 014463          289 NDLLVHECDVLVPCALGGVLN--KE--NAADVK-AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWV  363 (424)
Q Consensus       289 ~~ll~~~~DIliPaA~~~~It--~~--na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~  363 (424)
                      +++  .++||+|-|.-.+...  ..  ..+.++ -++|++-+.+|...+-.+.++++|+.++|..-.-.+..+.++..|.
T Consensus       167 ~~~--~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v~g~~mlv~q~~~a~~~w~  244 (263)
T 2d5c_A          167 EKA--REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAFRLWT  244 (263)
T ss_dssp             GGG--GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHH
T ss_pred             hhc--cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEECcHHHHHHHHHHHHHHHh
Confidence            344  6899999887544211  01  122333 3578888877752245567888999988764433333334444443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.61  E-value=0.00041  Score=67.28  Aligned_cols=115  Identities=23%  Similarity=0.331  Sum_probs=75.1

Q ss_pred             HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-
Q 014463          210 LLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-  288 (424)
Q Consensus       210 ~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-  288 (424)
                      ++...+.++.|++|.|.|+|++|+.+++.|...|++|+ +.|.+          .+.+.... +.       +.+.++. 
T Consensus       145 ~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~~~-~~-------g~~~~~~~  205 (293)
T 3d4o_A          145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVK-VGARE----------SDLLARIA-EM-------GMEPFHIS  205 (293)
T ss_dssp             HHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESS----------HHHHHHHH-HT-------TSEEEEGG
T ss_pred             HHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHH-HC-------CCeecChh
Confidence            34456788999999999999999999999999999987 56653          22222221 11       1222221 


Q ss_pred             --CcccccccceeeeccccCccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          289 --NDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       289 --~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                        ++++ .++|+++-|.-.+.|+++....++ -.+++.-+-+|..-+- +...++|+.++
T Consensus       206 ~l~~~l-~~aDvVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~  263 (293)
T 3d4o_A          206 KAAQEL-RDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKAL  263 (293)
T ss_dssp             GHHHHT-TTCSEEEECCSSCCBCHHHHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEE
T ss_pred             hHHHHh-cCCCEEEECCChHHhCHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEE
Confidence              2333 479999999877777776555553 3477777766532122 45667787664

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.55  E-value=0.00047  Score=71.00  Aligned_cols=108  Identities=16%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      |+..+..++   .+..+..+.|++|+|+|+|++|+.+|+.|...|++|+ ++|.+          ..........     
T Consensus       193 t~~slldgi---~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Vi-v~D~~----------p~~a~~A~~~-----  253 (436)
T 3h9u_A          193 CRESLVDGI---KRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVV-VTEVD----------PINALQAAME-----  253 (436)
T ss_dssp             HHHHHHHHH---HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-----
T ss_pred             chHHHHHHH---HHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCC----------hhhhHHHHHh-----
Confidence            444444433   3356888999999999999999999999999999987 67763          2222222221     


Q ss_pred             cCCCCeeecCCcccccccceeeeccc-cCcccccccccccc-eEEEecCCCCC
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKA-KFIIEAANHPT  329 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgAN~p~  329 (424)
                         +.+..+.++++. .+||++.+.- .+.|+.+....++- -+|+.-++++.
T Consensus       254 ---G~~~~sL~eal~-~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          254 ---GYQVLLVEDVVE-EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             ---TCEECCHHHHTT-TCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGG
T ss_pred             ---CCeecCHHHHHh-hCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCC
Confidence               122334455554 6999997763 46788888877643 57788888763

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.55  E-value=0.00025  Score=70.47  Aligned_cols=169  Identities=20%  Similarity=0.262  Sum_probs=95.2

Q ss_pred             CeEEEEecChHHHHHHHHHHH---------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE---------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~---------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      .+|+|.|+|+||+..++.|.+         .+.+|++|+|++....++  +|+.+..+.+.....+..     ..+.+++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~--id~~~~~~~~~~~~~~~~-----~~d~~~l   75 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD--FSLVEALRMKRETGMLRD-----DAKAIEV   75 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS--CCHHHHHHHHHHHSSCSB-----CCCHHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc--cCHHHHHhhhccCccccC-----CCCHHHH
Confidence            489999999999999999976         478999999999998887  887766554332222211     1133456


Q ss_pred             cc-cccceeeeccccCccccc---cccc-c--cceEEEecCCCCCCHHH---HHHHHhCCceEeccccccccCc---chh
Q 014463          292 LV-HECDVLVPCALGGVLNKE---NAAD-V--KAKFIIEAANHPTDPEA---DEILSKKGVVILPDIYANSGGV---TVS  358 (424)
Q Consensus       292 l~-~~~DIliPaA~~~~It~~---na~~-i--~akiIvEgAN~p~t~eA---~~iL~~rGI~viPD~laNaGGV---i~s  358 (424)
                      ++ .++|+++.|.-...-+.+   .+.. +  +..+|+|-- .|++...   .+..+++|+.+.=  -++-|+-   +..
T Consensus        76 l~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NK-kpla~~~~eL~~~A~~~g~~~~~--ea~v~~g~Pii~~  152 (327)
T 3do5_A           76 VRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNK-GPLVAEFHGLMSLAERNGVRLMY--EATVGGAMPVVKL  152 (327)
T ss_dssp             HHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCS-HHHHHHHHHHHHHHHHTTCCEEC--GGGSSTTSCCHHH
T ss_pred             hcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCc-hhhHHHHHHHHHHHHhhCCcEEE--EEEeeecCHHHHH
Confidence            64 579999999643322111   1111 2  446777611 1333333   3456788986652  2333222   222


Q ss_pred             hHHHhhh-----cccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          359 YFEWVQN-----IQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       359 ~~E~~qn-----~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      --|++..     +.+. .=+-.-+..++.+. ...|++++..|++.|.
T Consensus       153 l~~~l~~~~I~~I~GIlnGT~nyilt~m~~~-g~~f~~~l~~Aq~~Gy  199 (327)
T 3do5_A          153 AKRYLALCEIESVKGIFNGTCNYILSRMEEE-RLPYEHILKEAQELGY  199 (327)
T ss_dssp             HHTTTTTSCEEEEEEECCHHHHHHHHHHHHH-CCCHHHHHHHHHHTTS
T ss_pred             HHHHhhCCCccEEEEEECCCcCcchhhcCcC-CcCHHHHHHHHHHcCC
Confidence            2232221     0000 00122244444321 4578899999998886

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.53  E-value=0.0032  Score=60.26  Aligned_cols=128  Identities=13%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      -.+.|+..+++    +.|.+++++++.|.|.|.+|+.+++.|.+.|++|+ |+|.+          .+++.+..++-+..
T Consensus       101 tD~~G~~~~L~----~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~-v~~R~----------~~~~~~la~~~~~~  165 (271)
T 1nyt_A          101 TDGVGLLSDLE----RLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVT-ITNRT----------VSRAEELAKLFAHT  165 (271)
T ss_dssp             CHHHHHHHHHH----HHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHHTGGG
T ss_pred             CCHHHHHHHHH----hcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHHhhcc
Confidence            35788777654    45778999999999999999999999999999877 77764          34444444332110


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCc------ccccccccccceEEEecCCCCC-CHHHHHHHHhCCce-Eec
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGV------LNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVV-ILP  346 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~------It~~na~~i~akiIvEgAN~p~-t~eA~~iL~~rGI~-viP  346 (424)
                         ......+.+++.+..+|++|-|+--..      |..+-..  ...+|++-.-+|. |+- .+..+++|+. +++
T Consensus       166 ---~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~--~~~~v~D~~y~p~~t~~-~~~a~~~G~~~~~~  236 (271)
T 1nyt_A          166 ---GSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIH--PGIYCYDMFYQKGKTPF-LAWCEQRGSKRNAD  236 (271)
T ss_dssp             ---SSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCC--TTCEEEESCCCSSCCHH-HHHHHHTTCCEEEC
T ss_pred             ---CCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcC--CCCEEEEeccCCcCCHH-HHHHHHcCCCeecC
Confidence               001111212221147999999875332      2211111  3368888888884 653 3567889987 543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.50  E-value=0.00043  Score=71.23  Aligned_cols=109  Identities=17%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .|+.+++.+++.   ..+..+.|++|+|.|+|++|+.+|+.|...|++|+ ++|.+.          ....+....    
T Consensus       201 Gt~~s~~~gi~r---at~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Vi-v~D~dp----------~ra~~A~~~----  262 (435)
T 3gvp_A          201 CCRESILDGLKR---TTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVY-VTEIDP----------ICALQACMD----  262 (435)
T ss_dssp             HHHHHHHHHHHH---HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCH----------HHHHHHHHT----
T ss_pred             hhHHHHHHHHHH---hhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEeCCh----------hhhHHHHHc----
Confidence            355555555443   45788999999999999999999999999999988 677642          222221111    


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc-cCccccccccccc-ceEEEecCCCCC
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVK-AKFIIEAANHPT  329 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~-akiIvEgAN~p~  329 (424)
                          +.+..+-++++. .+||++.|.- .+.|+.+....++ --+|+.-++++.
T Consensus       263 ----G~~v~~Leeal~-~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          263 ----GFRLVKLNEVIR-QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             ----TCEECCHHHHTT-TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             ----CCEeccHHHHHh-cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence                112233344443 7999999853 5678877776664 347788888764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.47  E-value=0.0012  Score=64.02  Aligned_cols=118  Identities=19%  Similarity=0.336  Sum_probs=78.1

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee---cC
Q 014463          212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM---DL  288 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i---~~  288 (424)
                      +..+.++.|++|.|+|+|++|+.+++.|...|++|+ +.|.+          .+++....+ .       +.+.+   +.
T Consensus       149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~d~~----------~~~~~~~~~-~-------g~~~~~~~~l  209 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVK-VGARS----------SAHLARITE-M-------GLVPFHTDEL  209 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESS----------HHHHHHHHH-T-------TCEEEEGGGH
T ss_pred             HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHH-C-------CCeEEchhhH
Confidence            345778999999999999999999999999999987 55653          233322222 1       12222   11


Q ss_pred             CcccccccceeeeccccCccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceEe--ccccc
Q 014463          289 NDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVVIL--PDIYA  350 (424)
Q Consensus       289 ~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~vi--PD~la  350 (424)
                      ++++ .++|+++-|.-.+.|+++....++ -.+++.-+-+|..-+. +...++|+.++  |+.-.
T Consensus       210 ~~~l-~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~~g  272 (300)
T 2rir_A          210 KEHV-KDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGLPG  272 (300)
T ss_dssp             HHHS-TTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHH
T ss_pred             HHHh-hCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCCCC
Confidence            2333 479999999877888876655553 3577777776642222 45677888764  65443

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.37  E-value=0.0017  Score=65.94  Aligned_cols=172  Identities=20%  Similarity=0.212  Sum_probs=104.4

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      .+++--++..+..+.+..|.++.|+||.|+|+|++|+.+|+.|...|.+|++ .|..            .     .... 
T Consensus        96 ~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~-~d~~------------~-----~~~~-  156 (381)
T 3oet_A           96 IAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL-CDPP------------R-----AARG-  156 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECHH------------H-----HHTT-
T ss_pred             chhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEE-ECCC------------h-----HHhc-
Confidence            4566666666666777889999999999999999999999999999999984 3431            0     0001 


Q ss_pred             cccCCCCeeecCCcccccccceeeecc---------ccCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-
Q 014463          277 LNDFQGGNAMDLNDLLVHECDVLVPCA---------LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-  343 (424)
Q Consensus       277 v~~~~~~~~i~~~~ll~~~~DIliPaA---------~~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-  343 (424)
                          .+....+.++++ .+|||++-|.         ..+.|+++....++ -.+++..+-+++ +.+| .+.|++.+|. 
T Consensus       157 ----~~~~~~sl~ell-~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~g  231 (381)
T 3oet_A          157 ----DEGDFRTLDELV-QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLS  231 (381)
T ss_dssp             ----CCSCBCCHHHHH-HHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEE
T ss_pred             ----cCcccCCHHHHH-hhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeE
Confidence                011122334444 3799998776         34456666555554 468889998884 4444 4678888775 


Q ss_pred             EeccccccccCcchhhHHHh-hhccccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463          344 ILPDIYANSGGVTVSYFEWV-QNIQGFMWEEEKVNHELKRYMMSAFKDIK  392 (424)
Q Consensus       344 viPD~laNaGGVi~s~~E~~-qn~~~~~w~~e~v~~~l~~~m~~~~~~v~  392 (424)
                      ..=|+..+=--.-.+.++.. --..|..|.-.+...+....+.+.+.+.+
T Consensus       232 A~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l  281 (381)
T 3oet_A          232 VVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVFEAYSAFI  281 (381)
T ss_dssp             EEESCCTTTTSCCHHHHHHSSEECSSCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeccccCCCCcchhhhCCEEECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence            44555544432222222210 00235555444455555554555555444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.31  E-value=0.004  Score=59.76  Aligned_cols=141  Identities=12%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .++.|+..+++    +.|.++++++|+|.|.|.+|+.+++.|.+.|++|+ |.|.+          .+++.+..++.+  
T Consensus       111 Td~~G~~~~l~----~~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~-v~~r~----------~~~~~~l~~~~g--  173 (275)
T 2hk9_A          111 TDWIGFLKSLK----SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVF-LWNRT----------KEKAIKLAQKFP--  173 (275)
T ss_dssp             CHHHHHHHHHH----HHCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSS----------HHHHHHHTTTSC--
T ss_pred             CCHHHHHHHHH----HhCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHHcC--
Confidence            45777777654    45778899999999999999999999999999654 77764          344444333221  


Q ss_pred             ccCCCCeee-cCCcccccccceeeeccccCcccc--cc--ccccc-ceEEEecCCCCCCHHHHHHHHhCCceEecccccc
Q 014463          278 NDFQGGNAM-DLNDLLVHECDVLVPCALGGVLNK--EN--AADVK-AKFIIEAANHPTDPEADEILSKKGVVILPDIYAN  351 (424)
Q Consensus       278 ~~~~~~~~i-~~~~ll~~~~DIliPaA~~~~It~--~n--a~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laN  351 (424)
                           .... +..+.+ .++|++|-|.-.+....  ..  ...++ -++|++-+. ..|+ -.+..+++|+.++|..-.-
T Consensus       174 -----~~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~-~~t~-ll~~a~~~g~~~v~g~~ml  245 (275)
T 2hk9_A          174 -----LEVVNSPEEVI-DKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY-KETK-LLKKAKEKGAKLLDGLPML  245 (275)
T ss_dssp             -----EEECSCGGGTG-GGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS-SCCH-HHHHHHHTTCEEECSHHHH
T ss_pred             -----CeeehhHHhhh-cCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-ChHH-HHHHHHHCcCEEECCHHHH
Confidence                 1222 223333 48999998875443210  11  12232 358888888 4444 3345667999988875444


Q ss_pred             ccCcchhhHHHh
Q 014463          352 SGGVTVSYFEWV  363 (424)
Q Consensus       352 aGGVi~s~~E~~  363 (424)
                      .+.-..++..|.
T Consensus       246 v~q~~~a~~~w~  257 (275)
T 2hk9_A          246 LWQGIEAFKIWN  257 (275)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444454453

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.29  E-value=0.0069  Score=60.64  Aligned_cols=116  Identities=20%  Similarity=0.313  Sum_probs=77.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|++|+ +.|.       ...+.+...+.           +.+.. +.++++ 
T Consensus       159 ~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~-~~dr-------~~~~~~~~~~~-----------g~~~~~~l~ell-  218 (351)
T 3jtm_A          159 AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLL-YHDR-------LQMAPELEKET-----------GAKFVEDLNEML-  218 (351)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEE-EECS-------SCCCHHHHHHH-----------CCEECSCHHHHG-
T ss_pred             cccccCCEEeEEEeCHHHHHHHHHHHHCCCEEE-EeCC-------CccCHHHHHhC-----------CCeEcCCHHHHH-
Confidence            456999999999999999999999999999987 4443       33333322211           12223 224454 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la  350 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-|.+++ +.+| .+.|++..|. ..=|+..
T Consensus       219 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  284 (351)
T 3jtm_A          219 PKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWD  284 (351)
T ss_dssp             GGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             hcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCC
Confidence            47999998763     3356666666554 468899999984 4444 4688888876 3444443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.28  E-value=0.0028  Score=63.70  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=75.9

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCE-EEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL  292 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll  292 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|++ |+ +.|.+       ....+..    .+.+       .... +.++++
T Consensus       159 ~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~-~~d~~-------~~~~~~~----~~~g-------~~~~~~l~ell  219 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-YYDYQ-------ALPKDAE----EKVG-------ARRVENIEELV  219 (364)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEE-EECSS-------CCCHHHH----HHTT-------EEECSSHHHHH
T ss_pred             cccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE-EECCC-------ccchhHH----HhcC-------cEecCCHHHHH
Confidence            4579999999999999999999999999997 87 44543       2222211    1111       1122 224444


Q ss_pred             ccccceeeecccc-----Cccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce-Eecccccc
Q 014463          293 VHECDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV-ILPDIYAN  351 (424)
Q Consensus       293 ~~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~-viPD~laN  351 (424)
                      . ++|+++.|.-.     +.|+++....++ -.+++.-+.++ ++.++ .+.|.+.+|. ..=|.+.+
T Consensus       220 ~-~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~  286 (364)
T 2j6i_A          220 A-QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP  286 (364)
T ss_dssp             H-TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred             h-cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCC
Confidence            3 89999998754     456655555554 35788888887 45443 4788888876 33444433

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.28  E-value=0.0032  Score=62.84  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL  292 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll  292 (424)
                      +.++.|++|.|+|+|++|+.+|+.|. ..|.+|+ +.|.+.       -..+...+   .        +.... +.++++
T Consensus       158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~-~~d~~~-------~~~~~~~~---~--------g~~~~~~l~ell  218 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLV-YYDVAP-------ADAETEKA---L--------GAERVDSLEELA  218 (348)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECSSC-------CCHHHHHH---H--------TCEECSSHHHHH
T ss_pred             CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEE-EECCCC-------cchhhHhh---c--------CcEEeCCHHHHh
Confidence            56799999999999999999999999 9999987 455432       12222111   1        11222 223444


Q ss_pred             ccccceeeecccc-----Cccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce-Eeccccc
Q 014463          293 VHECDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-DPE-ADEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       293 ~~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~e-A~~iL~~rGI~-viPD~la  350 (424)
                       .+||+++.|.-.     +.|+.+....++ -.+|+.-+.+++ +.+ ..+.|.+..|. ..-|+..
T Consensus       219 -~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  284 (348)
T 2w2k_A          219 -RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE  284 (348)
T ss_dssp             -HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             -ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCC
Confidence             389999998743     445554445554 347778888864 444 44678776654 3455543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.27  E-value=0.0034  Score=61.24  Aligned_cols=53  Identities=17%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++.+.+++|++++|.|.|+ ||+.+|++|...|++|. +++++
T Consensus       139 ~PcTp~gi~~l----l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~  192 (288)
T 1b0a_A          139 RPCTPRGIVTL----LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHRF  192 (288)
T ss_dssp             CCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECSS
T ss_pred             CCCcHHHHHHH----HHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE-EEeCC
Confidence            36899886555    55678999999999999997 79999999999999977 77753

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.008  Score=59.03  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=70.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.        +..   . ..+.       +....+.++++ .
T Consensus       137 ~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~--------~~~---~-~~~~-------g~~~~~l~ell-~  195 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVL-AYDILD--------IRE---K-AEKI-------NAKAVSLEELL-K  195 (313)
T ss_dssp             CCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHH---H-HHHT-------TCEECCHHHHH-H
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCCc--------chh---H-HHhc-------CceecCHHHHH-h
Confidence            456999999999999999999999999999988 455532        111   1 1111       12222334554 3


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~  343 (424)
                      ++|+++.|.-     .+.|+++....++ -.+++.-+-++ ++.++ .+.|.+.+|.
T Consensus       196 ~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          196 NSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY  252 (313)
T ss_dssp             HCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred             hCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence            7999998863     3445555555553 35777777776 45443 4678887764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.27  E-value=0.002  Score=63.89  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |.++.|+||.|+|+|++|+.+|+.|...|++|+ +.|.+       ..+.+...+.           +....+.++++ .
T Consensus       140 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~-----------g~~~~~l~ell-~  199 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQ-YHEAK-------ALDTQTEQRL-----------GLRQVACSELF-A  199 (330)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEE-EECSS-------CCCHHHHHHH-----------TEEECCHHHHH-H
T ss_pred             CCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCC-------CCcHhHHHhc-----------CceeCCHHHHH-h
Confidence            346899999999999999999999999999987 44543       2222222111           11223334555 3


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      .||+++-|.-     .+.|+++....++ -.+++..+.+++ +.+| .+.|.+.+|.
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  256 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG  256 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence            7999998763     3456666666654 468889998884 4444 4688888876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.16  E-value=0.00093  Score=67.94  Aligned_cols=122  Identities=23%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCC--CCCHHHHHHHHHhc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPN--GIDVPALLKYKKSN  274 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~--GlDi~~L~~~~~~~  274 (424)
                      -|+-=+..++-.+++-.|++++..||+|.|.|.+|.++|++|...|+ +|+ +.|++|.++...  .|+  .+.+.+.+.
T Consensus       166 GTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~-v~D~~Gli~~~R~~~L~--~~k~~fa~~  242 (398)
T 2a9f_A          166 GTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVT-VVDKFGIINEQEAAQLA--PHHLDIAKV  242 (398)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEE-EEETTEECCTTCCCSCC--C---CHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEE-EEECCCcccCCccccch--HHHHHHhhc
Confidence            34444445556666767889999999999999999999999999999 655 999999888643  343  222222211


Q ss_pred             CCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCC
Q 014463          275 KSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANH  327 (424)
Q Consensus       275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~  327 (424)
                      ..  .+  ...-+-.|.+. .+||||=+.-++.+|++-+++..- .+|.--||-
T Consensus       243 ~~--~~--~~~~~L~eav~-~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNP  291 (398)
T 2a9f_A          243 TN--RE--FKSGTLEDALE-GADIFIGVSAPGVLKAEWISKMAARPVIFAMANP  291 (398)
T ss_dssp             HS--CT--TCCCSCSHHHH-TTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSS
T ss_pred             cC--cc--cchhhHHHHhc-cCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCC
Confidence            01  11  01112233333 479999998899999999888744 588889984

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.14  E-value=0.0094  Score=58.02  Aligned_cols=130  Identities=12%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHhC-CCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463          199 TGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKS  276 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~  276 (424)
                      .+.|+..+++    ..+ .+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+.+          .+++.++.++-+.
T Consensus       123 d~~G~~~~l~----~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~-v~nR~----------~~ka~~la~~~~~  187 (297)
T 2egg_A          123 DGLGYVQALE----EEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERID-MANRT----------VEKAERLVREGDE  187 (297)
T ss_dssp             HHHHHHHHHH----HHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEE-EECSS----------HHHHHHHHHHSCS
T ss_pred             CHHHHHHHHH----HhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHhhh
Confidence            3566655544    456 77899999999999999999999999998 665 77764          3455555443221


Q ss_pred             cccCCCCeeecCCccc--ccccceeeeccccCccccc-----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEecc
Q 014463          277 LNDFQGGNAMDLNDLL--VHECDVLVPCALGGVLNKE-----NAADV-KAKFIIEAANHPT-DPEADEILSKKGVVILPD  347 (424)
Q Consensus       277 v~~~~~~~~i~~~~ll--~~~~DIliPaA~~~~It~~-----na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viPD  347 (424)
                      .  +.  ..++-+++-  -.++||+|-|.-.+.....     ....+ .-.+|++-.-+|. |+ -.+..+++|+.+++.
T Consensus       188 ~--~~--~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-ll~~A~~~G~~~v~G  262 (297)
T 2egg_A          188 R--RS--AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETK-WLKEAKARGARVQNG  262 (297)
T ss_dssp             S--SC--CEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCH-HHHHHHHTTCEEECS
T ss_pred             c--cC--ceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCH-HHHHHHHCcCEEECC
Confidence            0  00  111111221  2479999988753321100     01123 3468889888884 65 556688999988766


Q ss_pred             c
Q 014463          348 I  348 (424)
Q Consensus       348 ~  348 (424)
                      .
T Consensus       263 l  263 (297)
T 2egg_A          263 V  263 (297)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.13  E-value=0.0052  Score=60.29  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=45.2

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+.|.+|++.    ++++.+.+++|++++|.|.|+ ||+.+|.+|...|+.|. |+++
T Consensus       145 ~PcTp~gv~~----lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~~~  197 (300)
T 4a26_A          145 TPCTAKGVIV----LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVT-IVHS  197 (300)
T ss_dssp             CCHHHHHHHH----HHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence            4689999775    466678999999999999987 89999999999999976 8886

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.09  E-value=0.0052  Score=58.90  Aligned_cols=129  Identities=11%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      +.|+..+++    +.|.+++++++.|.|.|.+|+.++..|.+.|++|+ |.+.+          .+++.+..++-+.   
T Consensus       103 ~~G~~~~L~----~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~-v~~R~----------~~~a~~l~~~~~~---  164 (272)
T 1p77_A          103 GIGLVTDLQ----RLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LANRT----------FSKTKELAERFQP---  164 (272)
T ss_dssp             HHHHHHHHH----HTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEESS----------HHHHHHHHHHHGG---
T ss_pred             HHHHHHHHH----HhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHHccc---
Confidence            677766654    46778999999999999999999999999998876 77764          3444444332111   


Q ss_pred             CCCCeeecCCcccccccceeeeccccCcccc-cccc--cc-cceEEEecCCCC-C-CHHHHHHHHhCCce-Eecc
Q 014463          280 FQGGNAMDLNDLLVHECDVLVPCALGGVLNK-ENAA--DV-KAKFIIEAANHP-T-DPEADEILSKKGVV-ILPD  347 (424)
Q Consensus       280 ~~~~~~i~~~~ll~~~~DIliPaA~~~~It~-~na~--~i-~akiIvEgAN~p-~-t~eA~~iL~~rGI~-viPD  347 (424)
                      +......+.+++.+.++||+|-|+--+.... ..++  .+ ...+|++-.-+| . |+- .+..+++|+. +++.
T Consensus       165 ~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t~l-l~~a~~~G~~~~v~G  238 (272)
T 1p77_A          165 YGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPF-IALCKSLGLTNVSDG  238 (272)
T ss_dssp             GSCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHH-HHHHHHTTCCCEECS
T ss_pred             cCCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCCHH-HHHHHHcCCCEeeCC
Confidence            1011112222221137999998875332110 0011  11 235778887777 3 664 4567888987 6653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.0045  Score=61.34  Aligned_cols=107  Identities=21%  Similarity=0.329  Sum_probs=69.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.        +.+..    .+.+       ....+.++++ .+
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~d~~~--------~~~~~----~~~g-------~~~~~l~e~l-~~  200 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLY-YWSRHR--------KVNVE----KELK-------ARYMDIDELL-EK  200 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSSC--------CHHHH----HHHT-------EEECCHHHHH-HH
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCc--------chhhh----hhcC-------ceecCHHHHH-hh
Confidence            56999999999999999999999999999987 556532        11111    1111       1122223444 38


Q ss_pred             cceeeeccccC-----cccccccccccceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          296 CDVLVPCALGG-----VLNKENAADVKAKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~~~-----~It~~na~~i~akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ||+++.|.-.+     .|+++....++..+++.-+.+++ +.++ .+.|.+..|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~  255 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLK  255 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBC
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence            99999987544     45544344443228888888875 4433 4678877664

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.04  E-value=0.001  Score=66.49  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=72.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH  294 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~  294 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.    +.     ...   ...       +.+.. +.++++. 
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~-~~d~~~----~~-----~~~---~~~-------g~~~~~~l~ell~-  222 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVL-FYDPYL----SD-----GVE---RAL-------GLQRVSTLQDLLF-  222 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECTTS----CT-----THH---HHH-------TCEECSSHHHHHH-
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EECCCc----ch-----hhH---hhc-------CCeecCCHHHHHh-
Confidence            46899999999999999999999999999988 455431    11     111   111       11222 3345554 


Q ss_pred             ccceeeeccc-----cCcccccccccccc-eEEEecCCCCC-CHH-HHHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPE-ADEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~a-kiIvEgAN~p~-t~e-A~~iL~~rGI~  343 (424)
                      ++||++.|.-     .+.|+++....++. .+++.-+.+++ +.+ ..+.|.+++|.
T Consensus       223 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  279 (347)
T 1mx3_A          223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  279 (347)
T ss_dssp             HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence            7999998753     44577666666643 58888888874 544 35789998876

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.99  E-value=0.017  Score=56.00  Aligned_cols=173  Identities=13%  Similarity=0.151  Sum_probs=99.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      .+..++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..+..        .... +..+++ .+
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~~~~~g--------~~~~~~~~e~~-~~   65 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVA-IWNRS----------PGKAAALVAAG--------AHLCESVKAAL-SA   65 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHT--------CEECSSHHHHH-HH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHCC--------CeecCCHHHHH-hc
Confidence            4566899999999999999999999999887 55653          34444444331        1222 222333 36


Q ss_pred             cceeeeccccCc-----cccccccc-ccceEEEecCCCCCC--HHHHHHHHhCCceEecccc------ccccCc-c-h--
Q 014463          296 CDVLVPCALGGV-----LNKENAAD-VKAKFIIEAANHPTD--PEADEILSKKGVVILPDIY------ANSGGV-T-V--  357 (424)
Q Consensus       296 ~DIliPaA~~~~-----It~~na~~-i~akiIvEgAN~p~t--~eA~~iL~~rGI~viPD~l------aNaGGV-i-~--  357 (424)
                      ||++|-|.-...     +.++.+.. ..-++|+...+....  .+..+.+.++|+.++.--+      +..++. + +  
T Consensus        66 aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg  145 (306)
T 3l6d_A           66 SPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTG  145 (306)
T ss_dssp             SSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcC
Confidence            999998865433     22111211 244677777766543  3445678899998875322      222222 1 1  


Q ss_pred             --hhHHHhhh----c-cccCCC--HHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          358 --SYFEWVQN----I-QGFMWE--EEK-----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       358 --s~~E~~qn----~-~~~~w~--~e~-----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                        ..+|.++.    + ....+-  .+.     ..+.+...+...+.|.+..+++.|+++.+...++
T Consensus       146 ~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~  211 (306)
T 3l6d_A          146 DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLL  211 (306)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence              12333322    2 122233  221     1112222335667788888999999988765544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.98  E-value=0.0047  Score=60.99  Aligned_cols=108  Identities=14%  Similarity=0.169  Sum_probs=68.8

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.       -..+.+    .+.       +....+.++++ .+
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~-------~~~~~~----~~~-------g~~~~~l~e~l-~~  210 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF-LYTGRQ-------PRPEEA----AEF-------QAEFVSTPELA-AQ  210 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEE-EEESSS-------CCHHHH----HTT-------TCEECCHHHHH-HH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-------cchhHH----Hhc-------CceeCCHHHHH-hh
Confidence            45899999999999999999999999999987 455431       112221    111       12222223444 48


Q ss_pred             cceeeecccc-----Cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q 014463          296 CDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-DP-EADEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~-eA~~iL~~rGI~  343 (424)
                      ||+++.|.-.     +.|+++....++ -.+++.-+.+++ +. +..+.|.+.+|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~  266 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA  266 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence            9999988743     345444444454 357778888763 44 445678887664

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.97  E-value=0.01  Score=59.36  Aligned_cols=108  Identities=14%  Similarity=0.246  Sum_probs=72.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|++|++ .|.+.          . . +...+.       +.+.. +.++++ 
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~----------~-~-~~~~~~-------g~~~~~~l~ell-  213 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV-WGREN----------S-K-ERARAD-------GFAVAESKDALF-  213 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSHH----------H-H-HHHHHT-------TCEECSSHHHHH-
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE-ECCCC----------C-H-HHHHhc-------CceEeCCHHHHH-
Confidence            3468999999999999999999999999999984 34321          1 1 111111       12233 334444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-D-PEADEILSKKGVV  343 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t-~eA~~iL~~rGI~  343 (424)
                      .+||+++-|.-     .+.|+.+....++ -.+++.-+.+++ + .+..+.|++..|.
T Consensus       214 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  271 (352)
T 3gg9_A          214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG  271 (352)
T ss_dssp             HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS
T ss_pred             hhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc
Confidence            47999998763     3456666655554 358888998884 3 4445789998885

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.97  E-value=0.024  Score=54.20  Aligned_cols=168  Identities=14%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+-          +.+.+..+.        +....+ .++++ .+||++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~~----------~~~~~~~~~--------g~~~~~~~~~~~-~~aDvv   61 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVT-IWNRSP----------EKAEELAAL--------GAERAATPCEVV-ESCPVT   61 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSG----------GGGHHHHHT--------TCEECSSHHHHH-HHCSEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEE-EEcCCH----------HHHHHHHHC--------CCeecCCHHHHH-hcCCEE
Confidence            689999999999999999999999987 667642          222233222        122221 22332 468999


Q ss_pred             eeccccCccccccc-------ccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-------------
Q 014463          300 VPCALGGVLNKENA-------ADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-------------  356 (424)
Q Consensus       300 iPaA~~~~It~~na-------~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-------------  356 (424)
                      |-|.-...-.++.+       +.+ +-++|+...+.+.  +.+..+.+.++|+.++.-  .-+|+..             
T Consensus        62 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg  139 (287)
T 3pef_A           62 FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEA--PVSGSKKPAEDGTLIILAAG  139 (287)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC--CEECCHHHHHHTCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEEC--CCcCCHHHHhcCCEEEEEeC
Confidence            98865332222222       222 3357777766542  334456788999987631  1222221             


Q ss_pred             -hhhHHHhhhcc-----cc----CCCHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          357 -VSYFEWVQNIQ-----GF----MWEEEKV----NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       357 -~s~~E~~qn~~-----~~----~w~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                       -..+|.++.+-     ..    .....+.    +.-+...+...+.|.+..+++.|+++.+..-.+.
T Consensus       140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~  207 (287)
T 3pef_A          140 DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIG  207 (287)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence             11223332210     00    0111222    2222333344678888899999999888766654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.008  Score=58.89  Aligned_cols=107  Identities=24%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.        +.+    ...+.       +.+..+.++++. +
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~--------~~~----~~~~~-------g~~~~~l~ell~-~  196 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNIL-LYDPYP--------NEE----RAKEV-------NGKFVDLETLLK-E  196 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHH----HHHHT-------TCEECCHHHHHH-H
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEE-EECCCC--------Chh----hHhhc-------CccccCHHHHHh-h
Confidence            46999999999999999999999999999988 455432        111    11111       122223345553 8


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ||+++.|.-     .+.|+++....++ -.+++.-+-+++ +.++ .+.|.+..|.
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~  252 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA  252 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence            999998863     3445555555553 357777777764 5443 5678887764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.91  E-value=0.02  Score=55.39  Aligned_cols=124  Identities=10%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      +.|...++    +..+.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+.+          .++..+..++-+.. 
T Consensus       110 ~~G~~~~L----~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~-v~~R~----------~~~a~~la~~~~~~-  173 (281)
T 3o8q_A          110 GEGLVQDL----LAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASIT-VTNRT----------FAKAEQLAELVAAY-  173 (281)
T ss_dssp             HHHHHHHH----HHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEE-EEESS----------HHHHHHHHHHHGGG-
T ss_pred             HHHHHHHH----HHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEE-EEECC----------HHHHHHHHHHhhcc-
Confidence            67776665    456888999999999999999999999999997 654 77764          34444433322111 


Q ss_pred             cCCCCeeecCCcccccccceeeeccccCc------ccccccccc-cceEEEecCCCC-CCHHHHHHHHhCCce-Eec
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCALGGV------LNKENAADV-KAKFIIEAANHP-TDPEADEILSKKGVV-ILP  346 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~~~~------It~~na~~i-~akiIvEgAN~p-~t~eA~~iL~~rGI~-viP  346 (424)
                        ......+.+++. .++||+|-|.--+.      +..   ..+ ...+|++-.-+| .|+-. +..+++|+. ++.
T Consensus       174 --~~~~~~~~~~l~-~~aDiIInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~~~~~  243 (281)
T 3o8q_A          174 --GEVKAQAFEQLK-QSYDVIINSTSASLDGELPAIDP---VIFSSRSVCYDMMYGKGYTVFN-QWARQHGCAQAID  243 (281)
T ss_dssp             --SCEEEEEGGGCC-SCEEEEEECSCCCC----CSCCG---GGEEEEEEEEESCCCSSCCHHH-HHHHHTTCSEEEC
T ss_pred             --CCeeEeeHHHhc-CCCCEEEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCCccCHHH-HHHHHCCCCEEEC
Confidence              011223334443 68999996653221      222   223 346889998778 47644 567889986 544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.89  E-value=0.0074  Score=62.97  Aligned_cols=96  Identities=18%  Similarity=0.324  Sum_probs=63.4

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      +..+..+.|++++|.|+|.+|+.+|+.|...|++|+ ++|.+          ...+.+.....        ....+.+++
T Consensus       257 r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Vi-v~D~~----------~~~a~~Aa~~g--------~dv~~lee~  317 (488)
T 3ond_A          257 RATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVI-VTEID----------PICALQATMEG--------LQVLTLEDV  317 (488)
T ss_dssp             HHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHTT--------CEECCGGGT
T ss_pred             HHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHhC--------CccCCHHHH
Confidence            456788999999999999999999999999999987 67763          33333333321        122233343


Q ss_pred             cccccceeeeccc-cCcccccccccccc-eEEEecCCC
Q 014463          292 LVHECDVLVPCAL-GGVLNKENAADVKA-KFIIEAANH  327 (424)
Q Consensus       292 l~~~~DIliPaA~-~~~It~~na~~i~a-kiIvEgAN~  327 (424)
                      + ..+|+++.|.- .+.|+.+....++- -+|+..++.
T Consensus       318 ~-~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          318 V-SEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             T-TTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             H-HhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            3 36899997753 45666655555432 355555554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.88  E-value=0.0083  Score=60.43  Aligned_cols=114  Identities=21%  Similarity=0.282  Sum_probs=73.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|+||.|+|+|++|+.+|+.|...|++|++ .|.       .. +.+...    +.       +....+.++++ .+
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~-~d~-------~~-~~~~~~----~~-------g~~~~~l~ell-~~  230 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRV-FDP-------WL-PRSMLE----EN-------GVEPASLEDVL-TK  230 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEE-ECS-------SS-CHHHHH----HT-------TCEECCHHHHH-HS
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEE-ECC-------CC-CHHHHh----hc-------CeeeCCHHHHH-hc
Confidence            458899999999999999999999999999983 343       31 222111    11       12223334554 47


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCceEeccccc
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVVILPDIYA  350 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~viPD~la  350 (424)
                      ||+++-|.-     .+.|+.+....++ -.+++.-|-+++ +.+| .+.|++..|...=|.+.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~  293 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYP  293 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCS
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCC
Confidence            999997753     3356666655553 358888888874 4444 46788877764445443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.87  E-value=0.014  Score=56.32  Aligned_cols=126  Identities=16%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      +.|...+   +++..+.+++++++.|.|.|.+|+.++..|.+.|+ +|+ |.+.+          .++..++.++-+.  
T Consensus       103 ~~G~~~~---lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~-i~~R~----------~~~a~~la~~~~~--  166 (272)
T 3pwz_A          103 GIGLLRD---IEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELV-IANRD----------MAKALALRNELDH--  166 (272)
T ss_dssp             HHHHHHH---HHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEE-EECSC----------HHHHHHHHHHHCC--
T ss_pred             HHHHHHH---HHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhcc--
Confidence            6666555   13456888999999999999999999999999997 654 77764          3455544443222  


Q ss_pred             cCCCCeeecCCcccccccceeeeccccCc------ccccccccccceEEEecCCCCC-CHHHHHHHHhCCce-Eec
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCALGGV------LNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVV-ILP  346 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~~~~------It~~na~~i~akiIvEgAN~p~-t~eA~~iL~~rGI~-viP  346 (424)
                        .....++.+++-..++||+|=|.--+.      +..+...  +..+|++-.-+|. |+ --+..+++|+. ++.
T Consensus       167 --~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~--~~~~V~DlvY~P~~T~-ll~~A~~~G~~~~~~  237 (272)
T 3pwz_A          167 --SRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLG--EAALAYELAYGKGLTP-FLRLAREQGQARLAD  237 (272)
T ss_dssp             --TTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGT--TCSEEEESSCSCCSCH-HHHHHHHHSCCEEEC
T ss_pred             --CCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhC--cCCEEEEeecCCCCCH-HHHHHHHCCCCEEEC
Confidence              012233334443368999996643221      2222211  3468899988884 66 33456788875 443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.86  E-value=0.033  Score=56.59  Aligned_cols=109  Identities=15%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+       ....+..    .+.+       .... +.++++ 
T Consensus       186 ~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~-~~d~~-------~~~~~~~----~~~G-------~~~~~~l~ell-  245 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLH-YTDRH-------RLPESVE----KELN-------LTWHATREDMY-  245 (393)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSS-------CCCHHHH----HHHT-------CEECSSHHHHG-
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEE-EEcCC-------ccchhhH----hhcC-------ceecCCHHHHH-
Confidence            456999999999999999999999999999988 44543       1122111    1111       1111 224555 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPE-ADEILSKKGVV  343 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~e-A~~iL~~rGI~  343 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-+-+++ +.+ ..+.|.+..|.
T Consensus       246 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  303 (393)
T 2nac_A          246 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA  303 (393)
T ss_dssp             GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             hcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence            48999998853     4456666656654 367888888874 543 44678777664

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.82  E-value=0.017  Score=57.43  Aligned_cols=108  Identities=20%  Similarity=0.266  Sum_probs=71.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.        +...    ..+.       +.+..+.++++ .
T Consensus       160 ~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~-~~d~~~--------~~~~----~~~~-------g~~~~~l~ell-~  218 (335)
T 2g76_A          160 GTELNGKTLGILGLGRIGREVATRMQSFGMKTI-GYDPII--------SPEV----SASF-------GVQQLPLEEIW-P  218 (335)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSS--------CHHH----HHHT-------TCEECCHHHHG-G
T ss_pred             CcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEE-EECCCc--------chhh----hhhc-------CceeCCHHHHH-h
Confidence            356999999999999999999999999999998 445431        1111    1111       12222334544 3


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPE-ADEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~e-A~~iL~~rGI~  343 (424)
                      +||+++-|.-     .+.|+++....++ -.+++.-+-+++ +.+ ..+.|.+..|.
T Consensus       219 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~  275 (335)
T 2g76_A          219 LCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA  275 (335)
T ss_dssp             GCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence            7999998863     3456655555554 357788888875 443 35678887764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.79  E-value=0.0076  Score=59.65  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|++ .|.+..-  .++++               ..  ....+.++++ .
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~--~~~~~---------------~~--~~~~~l~ell-~  190 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIG-VNTTGHP--ADHFH---------------ET--VAFTATADAL-A  190 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-EESSCCC--CTTCS---------------EE--EEGGGCHHHH-H
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEE-ECCCcch--hHhHh---------------hc--cccCCHHHHH-h
Confidence            4569999999999999999999999999999985 4443210  01110               00  0011334444 4


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la  350 (424)
                      +||+++-|.-     .+.|+.+....++ -.+++.-+-+++ +.+| .+.|++..|. ..=|+..
T Consensus       191 ~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  255 (324)
T 3evt_A          191 TANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTE  255 (324)
T ss_dssp             HCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCS
T ss_pred             hCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCC
Confidence            7999997753     4556666666554 358888888884 5444 4678887775 3444443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.79  E-value=0.015  Score=57.25  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=69.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC-CCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI-TGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~-~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|. +.        +....   .+ .       +.... +.++++ 
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~~--------~~~~~---~~-~-------g~~~~~~l~ell-  200 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDID-YFDTHRA--------SSSDE---AS-Y-------QATFHDSLDSLL-  200 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSCC--------CHHHH---HH-H-------TCEECSSHHHHH-
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCCc--------Chhhh---hh-c-------CcEEcCCHHHHH-
Confidence            35899999999999999999999999999988 4454 32        11111   11 1       11222 223444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV  343 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~  343 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-+.++ ++.++ .+.|.+.+|.
T Consensus       201 ~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~  258 (320)
T 1gdh_A          201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  258 (320)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence            38999998864     3445555555553 35777777776 45443 5678887765

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.78  E-value=0.0026  Score=63.01  Aligned_cols=105  Identities=25%  Similarity=0.443  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+..   +. +         +      .+  ....+.++++. +
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~~---~~-~---------~------~~--~~~~~l~ell~-~  198 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVI-GEDVFEI---KG-I---------E------DY--CTQVSLDEVLE-K  198 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC---CS-C---------T------TT--CEECCHHHHHH-H
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCcc---HH-H---------H------hc--cccCCHHHHHh-h
Confidence            45889999999999999999999999999988 4554321   00 0         0      00  11223344553 7


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~  343 (424)
                      ||+++.|.-     .+.|+++....++ -.+++.-+-++ ++.++ .+.|++.+|.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG  254 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCce
Confidence            999998753     3456655555554 35778777776 44443 4688888876

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.77  E-value=0.0041  Score=65.43  Aligned_cols=108  Identities=24%  Similarity=0.302  Sum_probs=70.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |..+.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+       . +.+..    .+.|       ....+.++++ .
T Consensus       137 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~-~~d~~-------~-~~~~a----~~~g-------~~~~~l~e~~-~  195 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVV-AYDPY-------V-SPARA----AQLG-------IELLSLDDLL-A  195 (529)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECTT-------S-CHHHH----HHHT-------CEECCHHHHH-H
T ss_pred             ccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EECCC-------C-ChhHH----HhcC-------cEEcCHHHHH-h
Confidence            356999999999999999999999999999987 34543       1 22221    1111       1222333444 3


Q ss_pred             ccceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      +||+++.|.     ..+.|+++..+.++ -.+|+.-+-+.+ +.++ .+.|.+..|.
T Consensus       196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~  252 (529)
T 1ygy_A          196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  252 (529)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCcc
Confidence            899999885     44566665555554 367888888775 4433 3667776553

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.74  E-value=0.0032  Score=63.14  Aligned_cols=109  Identities=14%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc-
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC-  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~-  296 (424)
                      ++.++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..+. + +..+     -+.+++. .++ 
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-~~~~-----~s~~e~~-~~a~   80 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECV-VYDLN----------VNAVQALERE-G-IAGA-----RSIEEFC-AKLV   80 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHTT-T-CBCC-----SSHHHHH-HHSC
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHHC-C-CEEe-----CCHHHHH-hcCC
Confidence            456899999999999999999999999987 66653          3444444332 1 1110     1223333 245 


Q ss_pred             --ceeeeccccCccccccccc----c-cceEEEecCCCCC--CHHHHHHHHhCCceEec
Q 014463          297 --DVLVPCALGGVLNKENAAD----V-KAKFIIEAANHPT--DPEADEILSKKGVVILP  346 (424)
Q Consensus       297 --DIliPaA~~~~It~~na~~----i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viP  346 (424)
                        |++|-|--.. ..++.+..    + .-.+|+..+|...  +.+..+.|.++|+.+++
T Consensus        81 ~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           81 KPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             SSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEe
Confidence              9999886544 22222222    3 3468999998863  45555789999998874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.73  E-value=0.019  Score=54.90  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=94.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+.          +.+.+..+.        +.... +.++++ .+||++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~-~~dr~~----------~~~~~~~~~--------g~~~~~~~~~~~-~~advv   61 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVT-VWNRNP----------AKCAPLVAL--------GARQASSPAEVC-AACDIT   61 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEE-EECSSG----------GGGHHHHHH--------TCEECSCHHHHH-HHCSEE
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEE-EEcCCH----------HHHHHHHHC--------CCeecCCHHHHH-HcCCEE
Confidence            479999999999999999999999887 556532          222222222        12222 122333 479999


Q ss_pred             eeccccCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCc--------c-----
Q 014463          300 VPCALGGVLNKE-------NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGV--------T-----  356 (424)
Q Consensus       300 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGV--------i-----  356 (424)
                      |-|.-.....++       -.+.+ +-++|+...+...  +.+..+.+.++|+.++.-  ...|+.        +     
T Consensus        62 i~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg  139 (287)
T 3pdu_A           62 IAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA--PVSGTKKPAEDGTLIILAAG  139 (287)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC--CEECCHHHHHHTCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC--CccCCHHHHhcCCEEEEEeC
Confidence            988654422222       12223 3357777776542  234456788899887632  122222        1     


Q ss_pred             -hhhHHHhhhcc--------ccC-CCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014463          357 -VSYFEWVQNIQ--------GFM-WEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGV  411 (424)
Q Consensus       357 -~s~~E~~qn~~--------~~~-w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~  411 (424)
                       -..+|.++.+-        ... ...-+    ++..+...+...+.|.+..+++.|+++.+..-++..
T Consensus       140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  208 (287)
T 3pdu_A          140 DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA  208 (287)
T ss_dssp             CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence             01233332210        000 11111    223333344566788888899999998887766543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=96.71  E-value=0.0016  Score=65.35  Aligned_cols=167  Identities=13%  Similarity=0.154  Sum_probs=89.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCC--CCCH-HHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPN--GIDV-PALLKYKKSNKSLNDFQGGNAMDLNDLL  292 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~--GlDi-~~L~~~~~~~g~v~~~~~~~~i~~~~ll  292 (424)
                      -.+|+|.|+|+||+.+++.|.+.    +.+|++|+|++...++++  |++. ....+..+...      + ...+-+.++
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~------~-~~~did~v~   76 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAAST------T-KTLPLDDLI   76 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCC------C-BCCCHHHHH
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhccc------C-CCCCHHHHH
Confidence            36899999999999999999876    379999999988778777  8764 33333332210      0 001112222


Q ss_pred             c-----cccceeeeccccCcccccccccc--cceEEEecCCC-CCC---HHHHHHH--HhCCceEecccccccc-Ccchh
Q 014463          293 V-----HECDVLVPCALGGVLNKENAADV--KAKFIIEAANH-PTD---PEADEIL--SKKGVVILPDIYANSG-GVTVS  358 (424)
Q Consensus       293 ~-----~~~DIliPaA~~~~It~~na~~i--~akiIvEgAN~-p~t---~eA~~iL--~~rGI~viPD~laNaG-GVi~s  358 (424)
                      +     ...||++.|.-....-..-..-+  +.-+|+  ||- |++   .++.++.  +++|+.+.=.....+| .++..
T Consensus        77 e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVt--aNkkpla~~~~~~~eL~~A~~~gv~~~~Ea~vg~giPii~~  154 (358)
T 1ebf_A           77 AHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIAT--PNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLPIISF  154 (358)
T ss_dssp             HHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEEC--CCCGGGSSCHHHHHHHTCCCTTCCCEECGGGTTTTSSCHHH
T ss_pred             HHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEe--cCcccccCCHHHHHHHHHHHHcCCEEEEccccccCCcHHHH
Confidence            1     13399999965432222222223  334555  332 443   5555543  3467766433322233 23333


Q ss_pred             hHHHhhh---c---cccCCC--HHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Q 014463          359 YFEWVQN---I---QGFMWE--EEKVNHELKRYMM------SAFKDIKTMCQTHNC  400 (424)
Q Consensus       359 ~~E~~qn---~---~~~~w~--~e~v~~~l~~~m~------~~~~~v~~~a~~~~~  400 (424)
                      .-+.+..   +   .+ -++  -.-+..    +|.      ..|.+++..|++.|.
T Consensus       155 l~~~l~~G~~I~~I~G-IlnGT~nyil~----~m~~~~~~g~~f~~~l~eAq~~Gy  205 (358)
T 1ebf_A          155 LREIIQTGDEVEKIEG-IFSGTLSYIFN----EFSTSQANDVKFSDVVKVAKKLGY  205 (358)
T ss_dssp             HHHHHHHTCCEEEEEE-ECCHHHHHHHH----HHSCSSCCCCCHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCeEEEEE-EEeecceeeec----ccccccccCCCHHHHHHHHHHcCC
Confidence            3344411   0   01 111  112222    232      478889999998885

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.70  E-value=0.016  Score=57.82  Aligned_cols=115  Identities=21%  Similarity=0.302  Sum_probs=76.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      |.++.|+||.|+|+|++|+.+|+.|...|.+|++ .|.       ...+.+..     .        +.+.. +.++++ 
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~dr-------~~~~~~~~-----~--------g~~~~~~l~ell-  225 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY-HNR-------TRLSHALE-----E--------GAIYHDTLDSLL-  225 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE-ECS-------SCCCHHHH-----T--------TCEECSSHHHHH-
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE-ECC-------CCcchhhh-----c--------CCeEeCCHHHHH-
Confidence            3569999999999999999999999999999984 444       32222211     0        12233 334554 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eecccccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYAN  351 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laN  351 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-|.+++ ..+| .+.|++..|. ..=|+..+
T Consensus       226 ~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~  292 (345)
T 4g2n_A          226 GASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFAN  292 (345)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTT
T ss_pred             hhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCC
Confidence            47999997763     3456666655554 468999999985 5444 3678877775 34444443

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.66  E-value=0.011  Score=61.49  Aligned_cols=97  Identities=20%  Similarity=0.313  Sum_probs=66.4

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463          213 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL  292 (424)
Q Consensus       213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll  292 (424)
                      ..+..+.|++|.|+|+|.+|+.+|+.|...|++|+ +.|.+          .....+....        +....+.++++
T Consensus       250 ~~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Vi-v~d~~----------~~~~~~a~~~--------g~~~~~l~ell  310 (479)
T 1v8b_A          250 ATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITEID----------PICAIQAVME--------GFNVVTLDEIV  310 (479)
T ss_dssp             HHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSC----------HHHHHHHHTT--------TCEECCHHHHT
T ss_pred             ccccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEE-EEeCC----------hhhHHHHHHc--------CCEecCHHHHH
Confidence            35778999999999999999999999999999988 55653          2222222211        11222334444


Q ss_pred             ccccceeeecc-ccCccccccccccc-ceEEEecCCCCC
Q 014463          293 VHECDVLVPCA-LGGVLNKENAADVK-AKFIIEAANHPT  329 (424)
Q Consensus       293 ~~~~DIliPaA-~~~~It~~na~~i~-akiIvEgAN~p~  329 (424)
                       .++|+++-|. ..+.|+.+....++ -.+|+.-+-+.+
T Consensus       311 -~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          311 -DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             -TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             -hcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence             3799999984 45667777666664 347777777765

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.66  E-value=0.0048  Score=60.30  Aligned_cols=166  Identities=16%  Similarity=0.216  Sum_probs=98.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DIl  299 (424)
                      ++|.++|.|++|+..|+.|.+.|..|+ |.|.+          .+++.++.+..        +...+ +.|+ ...||++
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~a~s~~e~-~~~~dvv   63 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFDLV----------QSAVDGLVAAG--------ASAARSARDA-VQGADVV   63 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHTT--------CEECSSHHHH-HTTCSEE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEE-EEcCC----------HHHHHHHHHcC--------CEEcCCHHHH-HhcCCce
Confidence            489999999999999999999999987 66653          45555555542        33222 2233 3579999


Q ss_pred             eeccccC-----ccccc--cccccc-ceEEEecCCCC--CCHHHHHHHHhCCceEeccccccccCcc----------h--
Q 014463          300 VPCALGG-----VLNKE--NAADVK-AKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGVT----------V--  357 (424)
Q Consensus       300 iPaA~~~-----~It~~--na~~i~-akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~laNaGGVi----------~--  357 (424)
                      |-|-...     ++...  -++.++ -++|++..+..  .+.+..+.++++|+.++=--  =+||+.          +  
T Consensus        64 ~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP--VsGg~~~A~~G~L~imvGG  141 (300)
T 3obb_A           64 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP--VSGGTAGAAAGTLTFMVGG  141 (300)
T ss_dssp             EECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC--EESCHHHHHHTCEEEEEES
T ss_pred             eecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecC--CCCCHHHHHhCCEEEEEeC
Confidence            9885432     22221  122232 37888888774  35666788999999887211  123321          1  


Q ss_pred             --hhHHHhhhc----c-ccCC----C----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014463          358 --SYFEWVQNI----Q-GFMW----E----EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFT  408 (424)
Q Consensus       358 --s~~E~~qn~----~-~~~w----~----~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~  408 (424)
                        ..||-++.+    . ...+    -    -.-++.-+...+...+.|.+..+++.|+++.....+
T Consensus       142 ~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~v  207 (300)
T 3obb_A          142 DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEI  207 (300)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence              123322211    0 0000    0    122444555555677788888899999988765544

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=96.66  E-value=0.0064  Score=63.94  Aligned_cols=174  Identities=18%  Similarity=0.209  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463          112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG  191 (424)
Q Consensus       112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG  191 (424)
                      .+..|-..|...|++++.+..||..-|-=.|++..  .---|.++|+..          -|+.   |             
T Consensus       204 v~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~--~af~il~ryr~~----------ipvF---n-------------  255 (555)
T 1gq2_A          204 IRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANA--NAFRLLHKYRNK----------YCTF---N-------------  255 (555)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHH--HHHHHHHHHTTT----------SEEE---E-------------
T ss_pred             CchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCc--cHHHHHHHHhcc----------CCEe---c-------------
Confidence            46677888999999999999998766777888743  333455677641          1220   0             


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCC-
Q 014463          192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNP-  259 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~-  259 (424)
                        ..-.-||-=+..++..+++..|.++++.||++.|.|..|-.+|++|..    .|.       +|. ++|++|-|++. 
T Consensus       256 --DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~-~~D~~Gli~~~r  332 (555)
T 1gq2_A          256 --DDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW-MVDSKGLIVKGR  332 (555)
T ss_dssp             --TTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE-EEETTEECBTTC
T ss_pred             --CccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEE-EEECCCeeeCCC
Confidence              111467777788888899989999999999999999999999999976    684       565 89999999974 


Q ss_pred             CCCCHHHHHHHHHhcCCcccCCCCeee-cCCccc-ccccceeeeccc-cCcccccccccc----cceEEEecCC
Q 014463          260 NGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL-VHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAAN  326 (424)
Q Consensus       260 ~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN  326 (424)
                      ++|+..     ++.   +..-..  .. +-.|.+ .++.||||=++. ++.+|++-++..    .-.||---||
T Consensus       333 ~~l~~~-----k~~---~A~~~~--~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN  396 (555)
T 1gq2_A          333 ASLTPE-----KEH---FAHEHC--EMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSN  396 (555)
T ss_dssp             SSCCTT-----GGG---GCBSCC--CCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCchHH-----HHH---HHhhcC--CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence            334422     111   110000  01 112223 357999999885 899999988876    3578998998

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.66  E-value=0.021  Score=56.44  Aligned_cols=108  Identities=21%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+.        +.+..    .+.+       ....+.++++ .
T Consensus       145 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~--------~~~~~----~~~g-------~~~~~l~~~l-~  203 (334)
T 2dbq_A          145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL-YYSRTR--------KEEVE----RELN-------AEFKPLEDLL-R  203 (334)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHHHH----HHHC-------CEECCHHHHH-H
T ss_pred             ccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEE-EECCCc--------chhhH----hhcC-------cccCCHHHHH-h
Confidence            346899999999999999999999999999987 556532        11111    1111       1222223444 4


Q ss_pred             ccceeeeccccC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCALGG-----VLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      +||+++.|.-..     .|+++..+.++ -.+++.-+.+++ +.++ .+.|.+..|.
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~  260 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIA  260 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence            899999887433     34433334443 347778888874 4433 4678876664

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.66  E-value=0.0049  Score=64.49  Aligned_cols=107  Identities=16%  Similarity=0.239  Sum_probs=70.4

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463          213 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL  292 (424)
Q Consensus       213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll  292 (424)
                      ..|..+.|++|.|+|+|.+|+.+|+.|...|++|+ +.|.+          .....+....        +....+.++++
T Consensus       270 ~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~-v~d~~----------~~~~~~a~~~--------G~~~~~l~ell  330 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVW-VTEID----------PICALQAAME--------GYRVVTMEYAA  330 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSC----------HHHHHHHHTT--------TCEECCHHHHT
T ss_pred             ccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------hHhHHHHHHc--------CCEeCCHHHHH
Confidence            35778999999999999999999999999999988 55653          2222111111        22223334444


Q ss_pred             ccccceeeecc-ccCccccccccccc-ceEEEecCCCCC--CHHHHHHHHh
Q 014463          293 VHECDVLVPCA-LGGVLNKENAADVK-AKFIIEAANHPT--DPEADEILSK  339 (424)
Q Consensus       293 ~~~~DIliPaA-~~~~It~~na~~i~-akiIvEgAN~p~--t~eA~~iL~~  339 (424)
                       .++||++-|. ..+.|+.+....++ --+|+.-+-+++  +.++-+.|.+
T Consensus       331 -~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL~AL~~  380 (494)
T 3d64_A          331 -DKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQW  380 (494)
T ss_dssp             -TTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGGTTSEE
T ss_pred             -hcCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHHHhhhc
Confidence             3799999884 35567777666665 357777777765  4443344433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.65  E-value=0.01  Score=57.39  Aligned_cols=170  Identities=14%  Similarity=0.136  Sum_probs=95.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      .++|+|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +...     ..-+.++++ .+||++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~~~-----~~~~~~e~~-~~aDvv   68 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTW-GADLN----------PQACANLLAE-GACG-----AAASAREFA-GVVDAL   68 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-TCSE-----EESSSTTTT-TTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHc-CCcc-----ccCCHHHHH-hcCCEE
Confidence            4689999999999999999999999987 55653          3444444433 2110     012334444 479999


Q ss_pred             eeccccCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-------------
Q 014463          300 VPCALGGVLNKE-------NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-------------  356 (424)
Q Consensus       300 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-------------  356 (424)
                      |-|.-.....++       -.+.+ .-++|+...+.+.  +.+..+.+.++|+.++.-  .-+|+..             
T Consensus        69 i~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg  146 (303)
T 3g0o_A           69 VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDA--PVSGGAVKAAQGEMTVMASG  146 (303)
T ss_dssp             EECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC--CEESCHHHHHTTCEEEEEEC
T ss_pred             EEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeC--CCCCChhhhhcCCeEEEeCC
Confidence            988654322222       22233 3357777776542  234456788899877631  1223221             


Q ss_pred             -hhhHHHhhhcc--------ccC--CCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          357 -VSYFEWVQNIQ--------GFM--WEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       357 -~s~~E~~qn~~--------~~~--w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                       -..+|.++.+-        ...  ....+    ++..+...+...+.+.+..+++.++++.+...++
T Consensus       147 ~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~  214 (303)
T 3g0o_A          147 SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVV  214 (303)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence             11233332211        000  11112    2222333344567788888999999888766554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.65  E-value=0.017  Score=57.29  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=70.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+..     -.               .   +.... +.++++ 
T Consensus       159 ~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~dr~~~-----~~---------------~---g~~~~~~l~ell-  213 (333)
T 3ba1_A          159 TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPIS-YFSRSKK-----PN---------------T---NYTYYGSVVELA-  213 (333)
T ss_dssp             CCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEE-EECSSCC-----TT---------------C---CSEEESCHHHHH-
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCCch-----hc---------------c---CceecCCHHHHH-
Confidence            356999999999999999999999999999987 5565321     00               0   11112 223333 


Q ss_pred             cccceeeecccc-----Cccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-D-PEADEILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t-~eA~~iL~~rGI~-viPD~l  349 (424)
                      .+||+++-|.-.     +.|+++....++ -.+|+.-+.++. + .+..+.|.+.+|. ..-|++
T Consensus       214 ~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~  278 (333)
T 3ba1_A          214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVF  278 (333)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCC
T ss_pred             hcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecC
Confidence            479999988643     445544444443 357788888874 3 3445678887764 334544

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.60  E-value=0.0051  Score=59.86  Aligned_cols=169  Identities=14%  Similarity=0.140  Sum_probs=95.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DIl  299 (424)
                      +||.++|+|++|...|+.|.+.|.+|+ +.|.+-          +++.+       +... ++...+ +.++. .+|||+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~-v~dr~~----------~~~~~-------l~~~-G~~~~~s~~e~~-~~~dvv   65 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELV-VWNRTA----------SKAEP-------LTKL-GATVVENAIDAI-TPGGIV   65 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EC-----------------CT-------TTTT-TCEECSSGGGGC-CTTCEE
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEE-EEeCCH----------HHHHH-------HHHc-CCeEeCCHHHHH-hcCCce
Confidence            489999999999999999999999987 666532          11111       1111 333332 23333 579999


Q ss_pred             eeccccCcccc-----cccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccc------cccC--cch----hh
Q 014463          300 VPCALGGVLNK-----ENAADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------NSGG--VTV----SY  359 (424)
Q Consensus       300 iPaA~~~~It~-----~na~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~la------NaGG--Vi~----s~  359 (424)
                      |-|-.......     +-+..+ +-++|++..+..  ++.+..+.+.++|+.++=--+.      ..|-  +.+    ..
T Consensus        66 i~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~  145 (297)
T 4gbj_A           66 FSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGA  145 (297)
T ss_dssp             EECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHH
T ss_pred             eeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhH
Confidence            98754332222     212222 335788877764  3556667899999988732221      1111  111    12


Q ss_pred             HHHhhh----ccc--cCCC----H----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          360 FEWVQN----IQG--FMWE----E----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       360 ~E~~qn----~~~--~~w~----~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                      ||-++.    ...  +++-    .    .-++.-+...+...+.|.+..+++.|+++.+...++
T Consensus       146 ~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l  209 (297)
T 4gbj_A          146 KERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEML  209 (297)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            333222    110  1111    1    224455555666778888999999999988765543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.60  E-value=0.0056  Score=60.68  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-eecCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-~i~~~~ll~  293 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|++ .|.+..  ...+                  +.... ..+.++++ 
T Consensus       135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~-~dr~~~--~~~~------------------~~~~~~~~~l~ell-  192 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLG-VSRSGR--ERAG------------------FDQVYQLPALNKML-  192 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC--CCTT------------------CSEEECGGGHHHHH-
T ss_pred             CcccccceEEEEEECHHHHHHHHHHHhCCCEEEE-EcCChH--Hhhh------------------hhcccccCCHHHHH-
Confidence            3569999999999999999999999999999984 454320  0000                  10000 11223443 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      .+|||++-|.-     .+.|+.+....++ -.+++.-+-+++ +.+| .+.|++..|.
T Consensus       193 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  250 (324)
T 3hg7_A          193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG  250 (324)
T ss_dssp             HTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSS
T ss_pred             hhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCce
Confidence            47999987753     4456666655554 458888888874 4443 4678888774

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.59  E-value=0.0055  Score=59.74  Aligned_cols=54  Identities=20%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+.|.+|++.    ++++.+.+++|++++|.|.|+ ||+.+|.+|..+|+.|. |++++
T Consensus       140 ~~PcTp~gv~~----lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~  194 (285)
T 3l07_A          140 LESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRF  194 (285)
T ss_dssp             CCCHHHHHHHH----HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCC
Confidence            34689999875    566778999999999999987 89999999999999975 88753

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.58  E-value=0.0053  Score=60.91  Aligned_cols=106  Identities=24%  Similarity=0.318  Sum_probs=69.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+..   +. +               ..+  ....+.++++ .
T Consensus       140 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~~---~~-~---------------~~~--~~~~~l~ell-~  196 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI-AYDPYPM---KG-D---------------HPD--FDYVSLEDLF-K  196 (333)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC---SS-C---------------CTT--CEECCHHHHH-H
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCcc---hh-h---------------Hhc--cccCCHHHHH-h
Confidence            356899999999999999999999999999998 4554321   00 0               000  1122334445 3


Q ss_pred             ccceeeecccc-----Cccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~  343 (424)
                      +||+++-|.--     +.|+++....++ -.+++.-+-++ ++.++ .+.|++.+|.
T Consensus       197 ~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA  253 (333)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             cCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence            79999988643     345554444453 35777777776 45444 4678887775

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.56  E-value=0.0022  Score=63.67  Aligned_cols=173  Identities=17%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC--------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH--------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~--------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      -.+|+|.|+|+||+.+++.|.+.        +.+|++|+|++....++. +|.+.+.+.+.. +.+..+.. ...+.+++
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~d~~~l   82 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER-IDIGKVISYKEK-GSLDSLEY-ESISASEA   82 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT-CCHHHHHHHHHT-TCGGGCCS-EECCHHHH
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc-cChHHHhhhhcc-CCcccccC-CCCCHHHH
Confidence            46899999999999999998764        479999999988777665 776665544332 22221211 01134566


Q ss_pred             cccccceeeeccccC---ccccccccc-c--cceEEEecCCC-CCCHHHHH---HHHhCCceEecccccccc-CcchhhH
Q 014463          292 LVHECDVLVPCALGG---VLNKENAAD-V--KAKFIIEAANH-PTDPEADE---ILSKKGVVILPDIYANSG-GVTVSYF  360 (424)
Q Consensus       292 l~~~~DIliPaA~~~---~It~~na~~-i--~akiIvEgAN~-p~t~eA~~---iL~~rGI~viPD~laNaG-GVi~s~~  360 (424)
                      +..++|+++.|.-..   ..+.+.+.+ +  +.-+|++  |- |+..++++   .-+++|+.+.-+...-.| .++..--
T Consensus        83 l~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvta--nK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l~  160 (331)
T 3c8m_A           83 LARDFDIVVDATPASADGKKELAFYKETFENGKDVVTA--NKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFID  160 (331)
T ss_dssp             HHSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEEC--CCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHH
T ss_pred             hCCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEec--CchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHHH
Confidence            666899999997654   122222222 2  3346652  32 33344443   455788876544322222 2333334


Q ss_pred             HHhhhc-----cccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          361 EWVQNI-----QGFMW--EEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       361 E~~qn~-----~~~~w--~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      +++..-     .+ -+  +-.-+..++++  ...|.+++..|++.|.
T Consensus       161 ~~l~g~~I~~I~G-I~nGT~nyil~~m~~--g~~f~~~l~eAq~~Gy  204 (331)
T 3c8m_A          161 YSVLPSRIKKFRG-IVSLTINYFIRELAN--KREFDDVLSEATKLGI  204 (331)
T ss_dssp             HHSTTCCCCEEEE-ECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTS
T ss_pred             HHhhcCcccEEEE-EEeccceeEecchhc--CCCHHHHHHHHHHcCC
Confidence            444310     01 01  11223344422  3468888888888774

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=96.55  E-value=0.0056  Score=64.86  Aligned_cols=174  Identities=14%  Similarity=0.188  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463          112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG  191 (424)
Q Consensus       112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG  191 (424)
                      .+-.|-..|...|++++.+..||..-|-=.|++..  .---|.++|+..          -|+   -|+        +   
T Consensus       242 v~g~~Yd~fvdefv~av~~~fGp~~~I~~EDf~~p--~af~il~ryr~~----------ipv---FnD--------D---  295 (605)
T 1o0s_A          242 VRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANP--NAFRLLDKYQDK----------YTM---FND--------D---  295 (605)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHH--HHHHHHHHHTTT----------SEE---EEH--------H---
T ss_pred             CChHHHHHHHHHHHHHHHHHhCCCcEeeHhhcCCc--cHHHHHHHhccC----------CCe---eCc--------c---
Confidence            45667788999999999999998766777888743  333455677631          122   000        1   


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCCC
Q 014463          192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPN  260 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~~  260 (424)
                          -.-||-=+..++..+++..|.++++.||++.|.|..|-.+|++|..    .|.       +|. ++|++|-|++..
T Consensus       296 ----iqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~vD~~Gli~~~r  370 (605)
T 1o0s_A          296 ----IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNR  370 (605)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTC
T ss_pred             ----cchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEE-EEECCCceeCCC
Confidence                1367777777888899989999999999999999999999999987    784       555 899999999743


Q ss_pred             -CCCHHHHHHHHHhcCCcccCCCCeee-cCCccc-ccccceeeeccc-cCcccccccccc----cceEEEecCC
Q 014463          261 -GIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL-VHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAAN  326 (424)
Q Consensus       261 -GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN  326 (424)
                       +|+..     ++   .+..-..  .. +-.|.+ .++.||||=++. ++.+|++-++..    .-.||---||
T Consensus       371 ~~l~~~-----k~---~~A~~~~--~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN  434 (605)
T 1o0s_A          371 KEMNPR-----HV---QFAKDMP--ETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSN  434 (605)
T ss_dssp             SSCCGG-----GT---TTCBSSC--CCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCchHH-----HH---HHHhhcC--CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence             34422     11   1111000  01 112223 357999999885 899999988876    3578998898

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=96.53  E-value=0.0059  Score=64.37  Aligned_cols=177  Identities=18%  Similarity=0.163  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463          112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG  191 (424)
Q Consensus       112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG  191 (424)
                      .+..|-..|...|++++....|+..-|-=.|++..  .---|.++|+..          -|+.   |+        +   
T Consensus       206 v~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~--~af~il~ryr~~----------ipvF---nD--------D---  259 (564)
T 1pj3_A          206 DRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNH--NAFRFLRKYREK----------YCTF---ND--------D---  259 (564)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHH--HHHHHHHHHTTT----------SSEE---EH--------H---
T ss_pred             CchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCc--cHHHHHHHhccC----------CCEe---CC--------C---
Confidence            45667888999999999999998766777888743  334455677641          1220   11        1   


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCCC
Q 014463          192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPN  260 (424)
Q Consensus       192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~~  260 (424)
                          -.-||-=+..++..+++..|.++++.||++.|.|..|-.+|++|..    .|.       +|. ++|++|-|++..
T Consensus       260 ----iqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~~D~~Gli~~~r  334 (564)
T 1pj3_A          260 ----IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGR  334 (564)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTC
T ss_pred             ----CchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEE-EEeCCCeEECCC
Confidence                1357777777888889989999999999999999999999999975    784       555 899999999743


Q ss_pred             --CCCHHHHHHHHHhcCCcccCCCCeeecCCccc-ccccceeeeccc-cCccccccccccc----ceEEEecCC
Q 014463          261 --GIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAAN  326 (424)
Q Consensus       261 --GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN  326 (424)
                        +|+..+ ..+.+.+....      .-+-.|.+ .++.||||=++. ++.+|++-++...    =.||---||
T Consensus       335 ~~~l~~~k-~~~A~~~~~~~------~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN  401 (564)
T 1pj3_A          335 KAKIDSYQ-EPFTHSAPESI------PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSN  401 (564)
T ss_dssp             SSCCCTTT-GGGCBCCCSSC------CSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             cccchHHH-HHHHHhcCccc------cCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence              454321 01111000000      00111222 347999999885 8999999888764    568888888

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.50  E-value=0.0067  Score=59.13  Aligned_cols=54  Identities=30%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+.|.+|++.    ++++.+.+++|++++|.|.|+ ||+.+|.+|...|++|. |++++
T Consensus       139 ~~PcTp~gv~~----lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt-v~h~~  193 (285)
T 3p2o_A          139 FLPCTPLGVMK----LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK  193 (285)
T ss_dssp             CCCHHHHHHHH----HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeCC
Confidence            35789999864    466778999999999999987 89999999999999966 88763

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.49  E-value=0.015  Score=57.15  Aligned_cols=100  Identities=26%  Similarity=0.366  Sum_probs=65.9

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+..     -.+             + .+     .+.++++ .+
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~~-----~~~-------------~-~~-----~~l~ell-~~  193 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVV-YHARTPK-----PLP-------------Y-PF-----LSLEELL-KE  193 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC-----SSS-------------S-CB-----CCHHHHH-HH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEE-EECCCCc-----ccc-------------c-cc-----CCHHHHH-hh
Confidence            46899999999999999999999999999987 4555321     000             0 11     1223333 37


Q ss_pred             cceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q 014463          296 CDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGV  342 (424)
Q Consensus       296 ~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI  342 (424)
                      ||+++-|.     ..+.|+++....++ -.+++.-+.+++ +.++ .+.|. ..|
T Consensus       194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i  247 (311)
T 2cuk_A          194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHL  247 (311)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred             CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence            89999884     34556655555554 357788888774 4433 45676 554

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.47  E-value=0.0081  Score=58.72  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=96.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~  296 (424)
                      .+.++|+|+|.|++|..+|+.|.+.|.+|+ +.|.+          .+.+.+..+.        +....+ .++++ .+|
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~dr~----------~~~~~~l~~~--------g~~~~~~~~e~~-~~a   88 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQ-VWNRT----------PARAASLAAL--------GATIHEQARAAA-RDA   88 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHTT--------TCEEESSHHHHH-TTC
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEE-EEcCC----------HHHHHHHHHC--------CCEeeCCHHHHH-hcC
Confidence            466899999999999999999999999987 55653          3444444332        122222 22333 479


Q ss_pred             ceeeeccccCccccccc------ccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc----------h
Q 014463          297 DVLVPCALGGVLNKENA------ADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT----------V  357 (424)
Q Consensus       297 DIliPaA~~~~It~~na------~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi----------~  357 (424)
                      |++|-|.-.....++..      +.+ +-++|+...+.+.  +.+..+.+.++|+.++.--  -+|+..          +
T Consensus        89 DvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p--v~g~~~~a~~g~l~i~~  166 (320)
T 4dll_A           89 DIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTP--VSGGTVGAEQGTLVIMA  166 (320)
T ss_dssp             SEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC--EECHHHHHHHTCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCC--CcCCHhHHhcCCeeEEe
Confidence            99998865332222222      122 3467777777642  3445567889999876321  122211          0


Q ss_pred             ----hhHHHhhh----ccccC----CCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          358 ----SYFEWVQN----IQGFM----WEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       358 ----s~~E~~qn----~~~~~----w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                          ..++.++.    +....    ...-+    +...+...+...+.|.+..+++.|+++.+....+
T Consensus       167 gg~~~~~~~~~~ll~~~~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~  234 (320)
T 4dll_A          167 GGKPADFERSLPLLKVFGRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAI  234 (320)
T ss_dssp             ESCHHHHHHHHHHHHHHEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence                11222221    10000    11111    2222333344567788888999999987766554

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.40  E-value=0.043  Score=52.73  Aligned_cols=131  Identities=15%  Similarity=0.159  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      -++.|+..+++.    .+.+++++++.|.|.|.+|+.+++.|.+.| +|+ ++|.+          .+++.+..++-+..
T Consensus       110 Td~~G~~~~L~~----~~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~-v~~r~----------~~~~~~l~~~~~~~  173 (287)
T 1nvt_A          110 TDGIGARMALEE----EIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IANRT----------VEKAEALAKEIAEK  173 (287)
T ss_dssp             CHHHHHHHHHHH----HHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EECSS----------HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH----hCCCcCCCEEEEECchHHHHHHHHHHHHCC-CEE-EEECC----------HHHHHHHHHHHhhh
Confidence            478888777653    466789999999999999999999999999 876 77764          23333332211000


Q ss_pred             ccCC---CCeeecCCcccccccceeeeccccCcccc---c---ccccc-cceEEEecCCCC-CCHHHHHHHHhCCceEec
Q 014463          278 NDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNK---E---NAADV-KAKFIIEAANHP-TDPEADEILSKKGVVILP  346 (424)
Q Consensus       278 ~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~---~---na~~i-~akiIvEgAN~p-~t~eA~~iL~~rGI~viP  346 (424)
                      ....   .....+..+.+ .++||+|-|+--+....   .   ....+ ...+|++-.-+| .|+ -.+..+++|+.+++
T Consensus       174 ~~~~~~~~~d~~~~~~~~-~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t~-ll~~a~~~G~~~~~  251 (287)
T 1nvt_A          174 LNKKFGEEVKFSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETV-LLKEAKKVNAKTIN  251 (287)
T ss_dssp             HTCCHHHHEEEECTTCCC-TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCH-HHHHHHTTTCEEEC
T ss_pred             cccccceeEEEeeHHHhh-CCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccCH-HHHHHHHCCCEEeC
Confidence            0000   00111112222 37899999885332110   0   12233 235788877666 354 33456788987554

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.37  E-value=0.018  Score=57.36  Aligned_cols=113  Identities=21%  Similarity=0.311  Sum_probs=74.2

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|++|+ +.|.+..       +  .    . +     .  .....+.++++ .
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~-~~d~~~~-------~--~----~-~-----~--~~~~~~l~ell-~  199 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVI-AYDVAYN-------P--E----F-E-----P--FLTYTDFDTVL-K  199 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC-------G--G----G-T-----T--TCEECCHHHHH-H
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEE-EECCChh-------h--h----h-h-----c--cccccCHHHHH-h
Confidence            346889999999999999999999999999998 4455321       0  0    0 0     0  11222334554 4


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la  350 (424)
                      +|||++-|.-     .+.|+.+....++ -.+++.-+-+++ ..+| .+.|.+..|. ..=|.+.
T Consensus       200 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~  264 (343)
T 2yq5_A          200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLA  264 (343)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCT
T ss_pred             cCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccc
Confidence            7999997764     3456666555554 358888888874 4443 4688888774 3444443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.37  E-value=0.057  Score=52.33  Aligned_cols=121  Identities=16%  Similarity=0.177  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      +.|...++    +..|.+++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .++..++.++-. ...
T Consensus       106 ~~G~~~~L----~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt----------~~ka~~La~~~~-~~~  170 (282)
T 3fbt_A          106 YIGFGKML----SKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN----------PEKTSEIYGEFK-VIS  170 (282)
T ss_dssp             HHHHHHHH----HHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC----------HHHHHHHCTTSE-EEE
T ss_pred             HHHHHHHH----HHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHhcC-ccc
Confidence            66766665    445888999999999999999999999999999444477764          344433332210 001


Q ss_pred             CCCCeeecCCcccccccceeeecc---ccCc-----ccccccccccceEEEecCCCCC-CHHHHHHHHhCCceEec
Q 014463          280 FQGGNAMDLNDLLVHECDVLVPCA---LGGV-----LNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVVILP  346 (424)
Q Consensus       280 ~~~~~~i~~~~ll~~~~DIliPaA---~~~~-----It~~na~~i~akiIvEgAN~p~-t~eA~~iL~~rGI~viP  346 (424)
                      |   ..+  ++ +  ++||+|=|.   +...     |..+..+  ...+|++-.-+|. |+ --+.-+++|..+++
T Consensus       171 ~---~~l--~~-l--~~DivInaTp~Gm~~~~~~~pi~~~~l~--~~~~v~DlvY~P~~T~-ll~~A~~~G~~~~~  235 (282)
T 3fbt_A          171 Y---DEL--SN-L--KGDVIINCTPKGMYPKEGESPVDKEVVA--KFSSAVDLIYNPVETL-FLKYARESGVKAVN  235 (282)
T ss_dssp             H---HHH--TT-C--CCSEEEECSSTTSTTSTTCCSSCHHHHT--TCSEEEESCCSSSSCH-HHHHHHHTTCEEEC
T ss_pred             H---HHH--Hh-c--cCCEEEECCccCccCCCccCCCCHHHcC--CCCEEEEEeeCCCCCH-HHHHHHHCcCeEeC
Confidence            1   001  12 2  899999654   3221     2211111  3468899998885 54 33445678887544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.36  E-value=0.053  Score=52.95  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ++.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+..   +.              + ..     ...+.++++ .+|
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~dr~~~---~~--------------~-~~-----~~~~l~ell-~~a  175 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVR-GFSRTPK---EG--------------P-WR-----FTNSLEEAL-REA  175 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEE-EECSSCC---CS--------------S-SC-----CBSCSHHHH-TTC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCcc---cc--------------C-cc-----cCCCHHHHH-hhC
Confidence            5899999999999999999999999999987 4565431   00              0 00     011233444 379


Q ss_pred             ceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q 014463          297 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPE-ADEILSKKGVV  343 (424)
Q Consensus       297 DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~e-A~~iL~~rGI~  343 (424)
                      |+++-|.-     .+.|+++....++ -.+++.-+.+++ +.+ ..+.|.+..|.
T Consensus       176 DvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~  230 (303)
T 1qp8_A          176 RAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF  230 (303)
T ss_dssp             SEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             CEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCce
Confidence            99998863     4456655555554 468888888874 443 34678887764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.36  E-value=0.0051  Score=52.16  Aligned_cols=105  Identities=11%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VH  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~  294 (424)
                      +.++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.          |.+.+.+..+..-.+...   . .++.+.+    -.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~-~id~----------~~~~~~~~~~~~~~~~~g---d-~~~~~~l~~~~~~   69 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVL-AVDK----------SKEKIELLEDEGFDAVIA---D-PTDESFYRSLDLE   69 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEE-EEES----------CHHHHHHHHHTTCEEEEC---C-TTCHHHHHHSCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEEC----------CHHHHHHHHHCCCcEEEC---C-CCCHHHHHhCCcc
Confidence            35689999999999999999999999998 4565          244444444332111100   0 1122222    23


Q ss_pred             ccceeeeccccCccc---ccccccc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          295 ECDVLVPCALGGVLN---KENAADV-KAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       295 ~~DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      ++|++|-|.-....|   ...++++ ..++|+-..    +++-.+.|.+.|+
T Consensus        70 ~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~----~~~~~~~l~~~G~  117 (141)
T 3llv_A           70 GVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVS----SPKKKEEFEEAGA  117 (141)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEES----CGGGHHHHHHTTC
T ss_pred             cCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEc----ChhHHHHHHHcCC
Confidence            689888775432222   2223332 345555432    2344567888887

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.35  E-value=0.0091  Score=58.20  Aligned_cols=54  Identities=28%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcC
Q 014463          194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +-.+.|..|++.    ++++.+.+++|++++|.|.|+ ||+.+|.+|...|++|. |+.+
T Consensus       139 ~~~PcTp~gv~~----lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVt-v~hs  193 (286)
T 4a5o_A          139 LLRPCTPKGIMT----LLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVT-VTHR  193 (286)
T ss_dssp             SSCCHHHHHHHH----HHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeC
Confidence            344789999855    466778999999999999877 99999999999999976 7765

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.34  E-value=0.013  Score=57.81  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|++. |.+..  ..++++               .+.+  ..+.++++ .
T Consensus       134 ~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~-dr~~~--~~~~~~---------------~~~~--~~~l~ell-~  192 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCW-SRSRK--SWPGVE---------------SYVG--REELRAFL-N  192 (315)
T ss_dssp             CCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEE-ESSCC--CCTTCE---------------EEES--HHHHHHHH-H
T ss_pred             CCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEE-cCCch--hhhhhh---------------hhcc--cCCHHHHH-h
Confidence            34689999999999999999999999999999854 43221  011111               1100  01223444 3


Q ss_pred             ccceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      +|||++-|.     ..+.|+++....++ -.+++.-+-+++ +.+| .+.|++..|.
T Consensus       193 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  249 (315)
T 3pp8_A          193 QTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK  249 (315)
T ss_dssp             TCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence            789988775     34456666666554 468899999884 4444 4678888775

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.33  E-value=0.036  Score=53.63  Aligned_cols=127  Identities=15%  Similarity=0.093  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      +.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .++..+..++-+.  .
T Consensus       111 ~~G~~~~l~----~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~----------~~~a~~la~~~~~--~  174 (283)
T 3jyo_A          111 VSGFGRGME----EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVINN--A  174 (283)
T ss_dssp             HHHHHHHHH----HHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS----------HHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHH----HhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC----------HHHHHHHHHHHHh--h
Confidence            677766654    45678999999999999999999999999999534477764          3333333222110  0


Q ss_pred             CCC--CeeecCCcccc--cccceeeecc---ccCc----ccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEec
Q 014463          280 FQG--GNAMDLNDLLV--HECDVLVPCA---LGGV----LNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVILP  346 (424)
Q Consensus       280 ~~~--~~~i~~~~ll~--~~~DIliPaA---~~~~----It~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viP  346 (424)
                      +++  ....+.+++-+  .++||+|-|.   +...    +..   ..+ +..+|++-.-+|. |+=. +.-+++|..+++
T Consensus       175 ~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~---~~l~~~~~v~DlvY~P~~T~ll-~~A~~~G~~~~~  250 (283)
T 3jyo_A          175 VGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMPIETELL-KAARALGCETLD  250 (283)
T ss_dssp             HTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCG---GGCCTTCEEEECCCSSSSCHHH-HHHHHHTCCEEC
T ss_pred             cCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCH---HHhCCCCEEEEecCCCCCCHHH-HHHHHCcCeEeC
Confidence            111  11223234322  3799999554   3221    222   123 3468899999884 6532 334567876543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.31  E-value=0.0054  Score=57.61  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=57.3

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCce--eCC--CCCCHHHHHHHHHhcCCcccCCCCeeecCC
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI--KNP--NGIDVPALLKYKKSNKSLNDFQGGNAMDLN  289 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i--~~~--~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~  289 (424)
                      ...++.+++|+|+|.|++|+.+|+.|.+.|..|+ +.|.+-.-  -..  +.+.-..+.++.++      ++.....++.
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~   85 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPE------HPHVHLAAFA   85 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESCHHHHHTCC-------CCHHHHGGG------STTCEEEEHH
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhh------cCceeccCHH
Confidence            3456889999999999999999999999999987 66764210  000  00000002222222      1111222333


Q ss_pred             cccccccceeeeccccCcccc---cc-cccccceEEEecCCC
Q 014463          290 DLLVHECDVLVPCALGGVLNK---EN-AADVKAKFIIEAANH  327 (424)
Q Consensus       290 ~ll~~~~DIliPaA~~~~It~---~n-a~~i~akiIvEgAN~  327 (424)
                      +++ .+||++|-|--...+.+   +. .+.+.-++|+..+|+
T Consensus        86 e~~-~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~  126 (245)
T 3dtt_A           86 DVA-AGAELVVNATEGASSIAALTAAGAENLAGKILVDIANP  126 (245)
T ss_dssp             HHH-HHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred             HHH-hcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence            333 47999998875543321   11 222355799999985

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.29  E-value=0.051  Score=55.60  Aligned_cols=154  Identities=16%  Similarity=0.275  Sum_probs=89.5

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|+|+.|+|+|++|+.+|+.+...|++|+ +.|.+...                   .   ..+.... +.++++ 
T Consensus       151 ~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~-~yd~~~~~-------------------~---~~~~~~~~sl~ell-  206 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR-YYDTSDKL-------------------Q---YGNVKPAASLDELL-  206 (416)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECTTCCC-------------------C---BTTBEECSSHHHHH-
T ss_pred             CccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCcchh-------------------c---ccCcEecCCHHHHH-
Confidence            346899999999999999999999999999998 44543110                   0   0011222 224444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCcc----hhhH
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVT----VSYF  360 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laNaGGVi----~s~~  360 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++.-|-+++ +.+| .+.|++..|. ..=|...+=--..    .+-+
T Consensus       207 ~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL  286 (416)
T 3k5p_A          207 KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPL  286 (416)
T ss_dssp             HHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTT
T ss_pred             hhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhH
Confidence            47999987763     3456666555554 468899999885 4444 4678777765 4444433311000    0111


Q ss_pred             HHhhh---ccccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463          361 EWVQN---IQGFMWEEEKVNHELKRYMMSAFKDIK  392 (424)
Q Consensus       361 E~~qn---~~~~~w~~e~v~~~l~~~m~~~~~~v~  392 (424)
                      -=..|   ..|..|.-++..+++...+.+.+.+.+
T Consensus       287 ~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l  321 (416)
T 3k5p_A          287 QGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYS  321 (416)
T ss_dssp             TTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            00111   235556555666666555444444443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.0091  Score=59.53  Aligned_cols=111  Identities=20%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|+||.|+|+|++|+.+|+.|...|.+|+ +.|.+..    ..                .   +.... +.++++ 
T Consensus       166 ~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~-~~dr~~~----~~----------------~---~~~~~~sl~ell-  220 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQIGRALASRAEAFGMSVR-YWNRSTL----SG----------------V---DWIAHQSPVDLA-  220 (340)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSCC----TT----------------S---CCEECSSHHHHH-
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCcc----cc----------------c---CceecCCHHHHH-
Confidence            356999999999999999999999999999987 5565321    00                0   11111 223444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA  350 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la  350 (424)
                      .+||+++-|.-     .+.|+++....++ -.+++..+.+++ +.+| .+.|++..|. ..=|+..
T Consensus       221 ~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~  286 (340)
T 4dgs_A          221 RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV  286 (340)
T ss_dssp             HTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCS
T ss_pred             hcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence            47899987764     3445555555553 358888888885 3333 3677777664 3344443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.28  E-value=0.0055  Score=63.95  Aligned_cols=174  Identities=14%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-eecCCccccc--cc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLNDLLVH--EC  296 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-~i~~~~ll~~--~~  296 (424)
                      .++|+|+|.|++|.++|+.|.+.|.+|+ +.|.+          .+.+.+..++.. . +. ... .-+.+++.+.  ++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~-~-g~-~i~~~~s~~e~v~~l~~a   69 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANEA-K-GT-KVVGAQSLKEMVSKLKKP   69 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTTT-T-TS-SCEECSSHHHHHHTBCSS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHhccc-C-CC-ceeccCCHHHHHhhccCC
Confidence            4689999999999999999999999887 66663          334444443311 0 00 000 0123444432  69


Q ss_pred             ceeeeccccCccccccc----ccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCc---------c----
Q 014463          297 DVLVPCALGGVLNKENA----ADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGV---------T----  356 (424)
Q Consensus       297 DIliPaA~~~~It~~na----~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGV---------i----  356 (424)
                      |++|-|--.+...++.+    +.+ +-++|+.+.|...  |.+..+.|.++|+.++.-  .-+||.         +    
T Consensus        70 DvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~--pVsGg~~gA~~G~~im~GG~  147 (484)
T 4gwg_A           70 RRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS--GVSGGEEGARYGPSLMPGGN  147 (484)
T ss_dssp             CEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEEC
T ss_pred             CEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC--CccCCHHHHhcCCeeecCCC
Confidence            99988765543333322    233 3479999999873  445556789999987743  222222         1    


Q ss_pred             hhhHHHhhhc----cc-c-------CCC--------HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 014463          357 VSYFEWVQNI----QG-F-------MWE--------EEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFTL  409 (424)
Q Consensus       357 ~s~~E~~qn~----~~-~-------~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  409 (424)
                      -..+|.++.+    .. .       .|-        -.-++.-++..+...+.|.+..+++ .|+++.+-+-++
T Consensus       148 ~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~  221 (484)
T 4gwg_A          148 KEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAF  221 (484)
T ss_dssp             GGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            1223333321    10 0       121        1235566777778889999999998 999988766554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.25  E-value=0.01  Score=50.71  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=63.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc----ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV----HEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~----~~~  296 (424)
                      .+|+|.|+|.+|+.+++.|.+.|..|+ +.|.          |.+.+.+..+..-.+. +.+   .+..+.|.    .++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~-vid~----------~~~~~~~~~~~g~~~i-~gd---~~~~~~l~~a~i~~a   72 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLV-VIET----------SRTRVDELRERGVRAV-LGN---AANEEIMQLAHLECA   72 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEE-EEES----------CHHHHHHHHHTTCEEE-ESC---TTSHHHHHHTTGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHHHHcCCCEE-ECC---CCCHHHHHhcCcccC
Confidence            479999999999999999999999998 4565          2444544443211111 000   12223332    378


Q ss_pred             ceeeeccccCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          297 DVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       297 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      |++|-|.-....|.   ..++++  ..++|+-.-    +++-.+.|++.|+-
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d  120 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARAH----YDDEVAYITERGAN  120 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCS
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCC
Confidence            98887755433222   233333  567777543    45666789999873

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.19  E-value=0.019  Score=59.97  Aligned_cols=94  Identities=18%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV  293 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~  293 (424)
                      .+..+.|++|+|+|+|.||+.+|+.+...|++|+ +.|.+          ...+...++. |       .+.++.++++ 
T Consensus       268 ~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Vi-v~d~~----------~~~~~~A~~~-G-------a~~~~l~e~l-  327 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGDVGKGCAEAMKGQGARVS-VTEID----------PINALQAMME-G-------FDVVTVEEAI-  327 (494)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-T-------CEECCHHHHG-
T ss_pred             cCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CEEecHHHHH-
Confidence            3556899999999999999999999999999988 56653          3333322221 1       2223333444 


Q ss_pred             cccceeeeccc-cCcccccccccc--cceEEEecCCCC
Q 014463          294 HECDVLVPCAL-GGVLNKENAADV--KAKFIIEAANHP  328 (424)
Q Consensus       294 ~~~DIliPaA~-~~~It~~na~~i--~akiIvEgAN~p  328 (424)
                      ..+|++|-|.- .+.|+.+..+.+  .+. |+.-+...
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggi-lvnvG~~~  364 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMKDHAI-LGNIGHFD  364 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSCTTCE-EEECSSSG
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcCCCcE-EEEeCCCC
Confidence            47999999964 345664444444  344 44444443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.19  E-value=0.01  Score=57.72  Aligned_cols=171  Identities=15%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~  296 (424)
                      .+-++|+|+|+|++|..+|+.|.+.|..|+ +.|.+-          +.+.+..+.        +.... +..+++ .+|
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~-~~dr~~----------~~~~~l~~~--------g~~~~~~~~~~~-~~a   78 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVT-VWNRTL----------SKCDELVEH--------GASVCESPAEVI-KKC   78 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSG----------GGGHHHHHT--------TCEECSSHHHHH-HHC
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEE-EEeCCH----------HHHHHHHHC--------CCeEcCCHHHHH-HhC
Confidence            344799999999999999999999999887 566642          222222222        12222 222333 469


Q ss_pred             ceeeeccccCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc----------
Q 014463          297 DVLVPCALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT----------  356 (424)
Q Consensus       297 DIliPaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi----------  356 (424)
                      |++|-|.-.....++.       .+.+ .-++|+.-.+.+.  +.+..+.+.++|+.++.--+  +|+..          
T Consensus        79 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv--~g~~~~a~~g~l~i~  156 (310)
T 3doj_A           79 KYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV--SGSKKPAEDGQLIIL  156 (310)
T ss_dssp             SEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE--ECCHHHHHHTCEEEE
T ss_pred             CEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCC--CCChhHHhcCCeEEE
Confidence            9999886433211121       2222 3367777776542  34455678899998763211  22221          


Q ss_pred             h----hhHHHhhhcc--------cc-CCCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          357 V----SYFEWVQNIQ--------GF-MWEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       357 ~----s~~E~~qn~~--------~~-~w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                      +    ..+|.++.+-        .. ....-+    +...+...+...+.|.+..+++.|+++.+..-++.
T Consensus       157 ~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~  227 (310)
T 3doj_A          157 AAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILD  227 (310)
T ss_dssp             EEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            1    1223332210        00 011111    22223333345567888889999999887766554

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.17  E-value=0.0091  Score=62.10  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=102.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--  294 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--  294 (424)
                      +..++|+|+|.|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..++.+   + .+.... +.+++...  
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~-v~~r~----------~~~~~~l~~~~~---~-~gi~~~~s~~e~v~~l~   77 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVS-IFNRS----------REKTEEVIAENP---G-KKLVPYYTVKEFVESLE   77 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEE-EECSS----------HHHHHHHHHHST---T-SCEEECSSHHHHHHTBC
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHhhCC---C-CCeEEeCCHHHHHhCCC
Confidence            567899999999999999999999999876 66653          344444444321   0 111111 22344432  


Q ss_pred             ccceeeeccccCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-----------
Q 014463          295 ECDVLVPCALGGVLNKENA----ADVK-AKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-----------  356 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-----------  356 (424)
                      +||++|-|--.+...++.+    +.++ -++|+..+|+..  |.+..+.|.++|+.++.-  .++||..           
T Consensus        78 ~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~g  155 (480)
T 2zyd_A           78 TPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT--GVSGGEEGALKGPSIMPG  155 (480)
T ss_dssp             SSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC--ccccCHhHHhcCCeEEec
Confidence            4999998865543333322    2333 469999999873  345557888999987732  3333321           


Q ss_pred             --hhhHHHhhhc----cc--------cCCC--------HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 014463          357 --VSYFEWVQNI----QG--------FMWE--------EEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFTL  409 (424)
Q Consensus       357 --~s~~E~~qn~----~~--------~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  409 (424)
                        -..+|.++.+    ..        ..|-        -.-+...+...+.+.+.|.+..+++ .|+++.+..-+.
T Consensus       156 g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~  231 (480)
T 2zyd_A          156 GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTF  231 (480)
T ss_dssp             SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence              1123333321    11        1111        0123444555567888888888988 699887766544

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.17  E-value=0.012  Score=57.78  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      -.+.|..|++..    +++.+.+++|++++|.|.|+ ||..+|++|...|++|. |++++-       -|+.        
T Consensus       144 ~~PcTp~gi~~l----l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~L~--------  203 (301)
T 1a4i_A          144 FIPCTPKGCLEL----IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHSKT-------AHLD--------  203 (301)
T ss_dssp             CCCHHHHHHHHH----HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SSHH--------
T ss_pred             ccCchHHHHHHH----HHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEE-EEECCc-------ccHH--------
Confidence            346899886554    66778999999999999996 89999999999999976 887531       0111        


Q ss_pred             cCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCCCCC
Q 014463          274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHPT  329 (424)
Q Consensus       274 ~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p~  329 (424)
                                      + .-.++||+|-|.. .+.|+.+-++.  --+|++-+-+++
T Consensus       204 ----------------~-~~~~ADIVI~Avg~p~~I~~~~vk~--GavVIDVgi~~~  241 (301)
T 1a4i_A          204 ----------------E-EVNKGDILVVATGQPEMVKGEWIKP--GAIVIDCGINYV  241 (301)
T ss_dssp             ----------------H-HHTTCSEEEECCCCTTCBCGGGSCT--TCEEEECCCBC-
T ss_pred             ----------------H-HhccCCEEEECCCCcccCCHHHcCC--CcEEEEccCCCc
Confidence                            1 1236888888875 55677776642  346777666554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.15  E-value=0.0093  Score=52.90  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--  292 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--  292 (424)
                      .++.+.+|+|.|+|.+|+.+++.|.+. |.+|+ +.|.+          .+.+....+..-.+..- +   .++.+.+  
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~-vid~~----------~~~~~~~~~~g~~~~~g-d---~~~~~~l~~   99 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISL-GIEIR----------EEAAQQHRSEGRNVISG-D---ATDPDFWER   99 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEE-EEESC----------HHHHHHHHHTTCCEEEC-C---TTCHHHHHT
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEE-EEECC----------HHHHHHHHHCCCCEEEc-C---CCCHHHHHh
Confidence            356788999999999999999999998 99988 44552          34444443322111100 0   0111221  


Q ss_pred             ---ccccceeeeccccCccccc---ccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          293 ---VHECDVLVPCALGGVLNKE---NAADV--KAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       293 ---~~~~DIliPaA~~~~It~~---na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                         -.++|++|-|.-....+..   .++..  ..++|+-. |   +++..+.|.+.|+-
T Consensus       100 ~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~---~~~~~~~l~~~G~~  154 (183)
T 3c85_A          100 ILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA-E---YPDQLEGLLESGVD  154 (183)
T ss_dssp             BCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE-S---SHHHHHHHHHHTCS
T ss_pred             ccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHcCCC
Confidence               1268998877543322211   22222  34666643 2   35555678888874

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.11  E-value=0.015  Score=56.74  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      ++.|+||.|+|+|++|+.+|+.|...|.+|++ .|.+..-     .+                  ..+.. +.++++ .+
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~-----~~------------------~~~~~~~l~ell-~~  173 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIA-YTRSSVD-----QN------------------VDVISESPADLF-RQ  173 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEE-ECSSCCC-----TT------------------CSEECSSHHHHH-HH
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEE-Eeccccc-----cc------------------cccccCChHHHh-hc
Confidence            58999999999999999999999999999984 4543210     00                  01122 223444 47


Q ss_pred             cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ||+++-|.-     .+.|+.+....++ -.+++.-+-+++ +.++ .+.|++++|.
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  229 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDV  229 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccce
Confidence            899987763     3456666666554 358888888874 4443 4688888775

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.10  E-value=0.032  Score=56.49  Aligned_cols=110  Identities=22%  Similarity=0.409  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--c
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V  293 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~  293 (424)
                      ++.|++|.|+|+|.+|+.+++.|...|+ +|+ +.|.+          .+.+.+..++.+       +..++.+++.  -
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~-v~~r~----------~~ra~~la~~~g-------~~~~~~~~l~~~l  225 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL-VANRT----------YERAVELARDLG-------GEAVRFDELVDHL  225 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE-EECSS----------HHHHHHHHHHHT-------CEECCGGGHHHHH
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcC-------CceecHHhHHHHh
Confidence            5789999999999999999999999998 776 66663          233333333322       1112112221  1


Q ss_pred             cccceeeeccccC--ccccccccc-c------cceEEEecCCCC--CCHHHHHHHHhCCceE--eccc
Q 014463          294 HECDVLVPCALGG--VLNKENAAD-V------KAKFIIEAANHP--TDPEADEILSKKGVVI--LPDI  348 (424)
Q Consensus       294 ~~~DIliPaA~~~--~It~~na~~-i------~akiIvEgAN~p--~t~eA~~iL~~rGI~v--iPD~  348 (424)
                      ..+||+|-|.-..  .++.+.... +      +-.++++.+. |  ++|+   +..-.||.+  +||+
T Consensus       226 ~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~-P~~i~~~---l~~l~~v~l~d~d~l  289 (404)
T 1gpj_A          226 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN-PRDVEEG---VENIEDVEVRTIDDL  289 (404)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTT---GGGSTTEEEEEHHHH
T ss_pred             cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC-CCCCCcc---ccccCCeEEEeHhhH
Confidence            4799999986422  334444443 2      3457788877 5  3543   334467766  6665

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=96.09  E-value=0.063  Score=53.30  Aligned_cols=32  Identities=34%  Similarity=0.716  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .||+|.|||-+|+.+++.|.++...|++|.|.
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~   32 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCEEEEEecC
Confidence            37999999999999999987778999999884

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.01  E-value=0.038  Score=47.14  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--ccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VHECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~~~~D  297 (424)
                      +++|+|.|.|.+|+.+++.|.+.|++ |.+.|.+          .+.+.++.++.+       ......+++.  -.++|
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~----------~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~D   82 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN----------IDHVRAFAEKYE-------YEYVLINDIDSLIKNND   82 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC----------HHHHHHHHHHHT-------CEEEECSCHHHHHHTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC----------HHHHHHHHHHhC-------CceEeecCHHHHhcCCC
Confidence            78999999999999999999999999 6688864          444544444322       1111222222  24799


Q ss_pred             eeeecccc
Q 014463          298 VLVPCALG  305 (424)
Q Consensus       298 IliPaA~~  305 (424)
                      ++|-|.-.
T Consensus        83 ivi~at~~   90 (144)
T 3oj0_A           83 VIITATSS   90 (144)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeCCC
Confidence            99988653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.99  E-value=0.0035  Score=60.61  Aligned_cols=166  Identities=18%  Similarity=0.189  Sum_probs=92.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|..+|+.|.+.|.+|+ +.|.+-     +  ..+++   .+.        +.... +.+++..  ||++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~-~~dr~~-----~--~~~~~---~~~--------g~~~~~~~~~~~~--aDvv   74 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVT-VYDIRI-----E--AMTPL---AEA--------GATLADSVADVAA--ADLI   74 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEE-EECSST-----T--TSHHH---HHT--------TCEECSSHHHHTT--SSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCCH-----H--HHHHH---HHC--------CCEEcCCHHHHHh--CCEE
Confidence            689999999999999999999999987 556542     1  12222   222        12222 3345555  9999


Q ss_pred             eeccccCcccccc----cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc--------------hh
Q 014463          300 VPCALGGVLNKEN----AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT--------------VS  358 (424)
Q Consensus       300 iPaA~~~~It~~n----a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi--------------~s  358 (424)
                      |-|.-.....++.    .+.+ .-++|+...+.+.  +.+..+.+.++|+.++.--  -+|+..              -.
T Consensus        75 i~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p--v~g~~~~a~~g~l~~~~gg~~~  152 (296)
T 3qha_A           75 HITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAP--VSGGAAAAARGELATMVGADRE  152 (296)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECC--EESCHHHHHHTCEEEEEECCHH
T ss_pred             EEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC--CcCCHHHHhcCCccEEecCCHH
Confidence            9886533222222    2222 3357777776642  3445567888899776211  111111              11


Q ss_pred             hHHHhhhcc-----cc----CCCHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463          359 YFEWVQNIQ-----GF----MWEEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL  409 (424)
Q Consensus       359 ~~E~~qn~~-----~~----~w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~  409 (424)
                      .+|.++.+-     ..    ....-+    ++..+...+...+.|.+..+++.++++.+.+-+.
T Consensus       153 ~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~  216 (296)
T 3qha_A          153 VYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVV  216 (296)
T ss_dssp             HHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhc
Confidence            223322210     00    011111    2233333445567888889999999988874443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=95.95  E-value=0.02  Score=58.98  Aligned_cols=135  Identities=21%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEc----CCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          205 FATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSD----ITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       205 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD----~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .++..+++..|.++++++|+|.|.|..|..+++.|.+.|+   +|+ |+|    ++|.++..+  +.+.|.++++.....
T Consensus       171 aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~-vvd~~~~R~G~~~~a~--~~~~L~~~~~~~a~~  247 (439)
T 2dvm_A          171 AGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVKPENVR-VVELVNGKPRILTSDL--DLEKLFPYRGWLLKK  247 (439)
T ss_dssp             HHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEEEETTEEEECCTTS--CHHHHSTTCHHHHTT
T ss_pred             HHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEE-EEEccCCCcCcccccc--chhHHHHHHHHHhhc
Confidence            4455566667889999999999999999999999999998   555 888    877665542  212222211110000


Q ss_pred             ccCCCCeeecCCcccccccceeeecccc--Cccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALG--GVLNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~--~~It~~na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                      .... ...-+-.+.+ .++||+|=|.-.  +.++++-.+.+. -.+|.+-+|-.-|+-.++. +++|..++
T Consensus       248 ~~~~-~~~~~L~e~l-~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A-~~~G~~iv  315 (439)
T 2dvm_A          248 TNGE-NIEGGPQEAL-KDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEA-KKAGARIV  315 (439)
T ss_dssp             SCTT-CCCSSHHHHH-TTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHH-HHHTCSEE
T ss_pred             cccc-cccccHHHHh-ccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHH-HHcCCeEE
Confidence            0000 0000001222 358999999876  888876555443 3588999774334333332 23466554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.93  E-value=0.079  Score=52.15  Aligned_cols=133  Identities=18%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      -+.|...+++    ..+.+++|+++.|.|.|.+|+.++..|.+.|+ +|+ |.+.+..       +.++..+..++-+. 
T Consensus       137 D~~Gf~~~L~----~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~-i~nR~~~-------~~~~a~~la~~~~~-  203 (315)
T 3tnl_A          137 DGTGYMRALK----EAGHDIIGKKMTICGAGGAATAICIQAALDGVKEIS-IFNRKDD-------FYANAEKTVEKINS-  203 (315)
T ss_dssp             HHHHHHHHHH----HTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE-EEECSST-------THHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHH----HcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEE-EEECCCc-------hHHHHHHHHHHhhh-
Confidence            3677766654    46888999999999999999999999999999 554 7776421       13344433322110 


Q ss_pred             ccCC-CCeeecCCc---ccc--cccceeeecc---ccCccccc---ccccc-cceEEEecCCCCC-CHHHHHHHHhCCce
Q 014463          278 NDFQ-GGNAMDLND---LLV--HECDVLVPCA---LGGVLNKE---NAADV-KAKFIIEAANHPT-DPEADEILSKKGVV  343 (424)
Q Consensus       278 ~~~~-~~~~i~~~~---ll~--~~~DIliPaA---~~~~It~~---na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~  343 (424)
                       .++ ....++-++   +-+  .++||+|-|.   +....+..   ....+ +..+|++-.-+|. |+ --+.-+++|..
T Consensus       204 -~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~-ll~~A~~~G~~  281 (315)
T 3tnl_A          204 -KTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTR-LLEIAEEQGCQ  281 (315)
T ss_dssp             -HSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCH-HHHHHHHTTCE
T ss_pred             -hcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCH-HHHHHHHCCCe
Confidence             010 011222222   211  3799999554   32211111   11223 3468899999985 55 33445678877


Q ss_pred             Eec
Q 014463          344 ILP  346 (424)
Q Consensus       344 viP  346 (424)
                      +++
T Consensus       282 ~~~  284 (315)
T 3tnl_A          282 TLN  284 (315)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.027  Score=55.02  Aligned_cols=168  Identities=12%  Similarity=0.037  Sum_probs=91.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCC-HHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGID-VPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlD-i~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      ++|+|+|+|++|..+|+.|.+.| .+|+ +.|.+..     -.+ .++..+...+.+.        .- +..+++ .+||
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~-~~dr~~~-----~~~~~~~~~~~~~~~g~--------~~~s~~e~~-~~aD   89 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLA-AYDLRFN-----DPAASGALRARAAELGV--------EPLDDVAGI-ACAD   89 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEE-EECGGGG-----CTTTHHHHHHHHHHTTC--------EEESSGGGG-GGCS
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEE-EEeCCCc-----cccchHHHHHHHHHCCC--------CCCCHHHHH-hcCC
Confidence            68999999999999999999999 8887 6665421     011 1233332222221        22 344444 4799


Q ss_pred             eeeeccccCcccc---cccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccccc-----ccCc--chhhH--HH
Q 014463          298 VLVPCALGGVLNK---ENAADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYAN-----SGGV--TVSYF--EW  362 (424)
Q Consensus       298 IliPaA~~~~It~---~na~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~laN-----aGGV--i~s~~--E~  362 (424)
                      ++|-|--.....+   +-.+.+ .-++|+...+.+  ++.+..+.+.++|+.++...+..     .|..  +++.-  |.
T Consensus        90 vVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vgg~~~~~  169 (317)
T 4ezb_A           90 VVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAVE  169 (317)
T ss_dssp             EEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEESTTHHH
T ss_pred             EEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEeCChHHH
Confidence            9998865443321   112223 235777776554  23445567889999876433322     1111  11100  22


Q ss_pred             hhhc----c----ccC--CCHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 014463          363 VQNI----Q----GFM--WEEE----KVNHELKRYMMSAFKDIKTMCQTHNCNLR  403 (424)
Q Consensus       363 ~qn~----~----~~~--w~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r  403 (424)
                      ++.+    .    ...  ...-    -++.-+...+...+.|.+..+++.|+++.
T Consensus       170 ~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~  224 (317)
T 4ezb_A          170 VAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER  224 (317)
T ss_dssp             HHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            2211    0    000  1111    13333444456677888888999999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.92  E-value=0.019  Score=55.69  Aligned_cols=52  Identities=17%  Similarity=0.045  Sum_probs=43.6

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+.|.+|++..++.    .+  ++|++++|.|.|+ ||..+|++|..+|++|. |++++
T Consensus       131 ~~PcTp~gv~~lL~~----~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt-v~~~~  183 (276)
T 3ngx_A          131 LVPATPRAVIDIMDY----YG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS-VCHSK  183 (276)
T ss_dssp             SCCHHHHHHHHHHHH----HT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCCcHHHHHHHHHH----hC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE-EEeCC
Confidence            447999998866554    45  9999999999986 89999999999999976 77763

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.82  E-value=0.08  Score=52.67  Aligned_cols=32  Identities=34%  Similarity=0.593  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|.|||-+|+.++|.|.++   ...|++|.|.
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~   36 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4899999999999999999876   4799999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.80  E-value=0.016  Score=48.16  Aligned_cols=33  Identities=39%  Similarity=0.546  Sum_probs=27.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~-~~d~   35 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIV-LIDI   35 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence            35789999999999999999999999988 4554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.79  E-value=0.049  Score=53.10  Aligned_cols=114  Identities=20%  Similarity=0.182  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVH  294 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~  294 (424)
                      ....++|+|+|.|++|+..++.|.+. |.+-|.|.|.+          .+...++.++.+.     .....+ .++++ .
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~----------~~~~~~l~~~~~~-----~~~~~~~~~e~v-~  195 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT----------KENAEKFADTVQG-----EVRVCSSVQEAV-A  195 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS----------HHHHHHHHHHSSS-----CCEECSSHHHHH-T
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC----------HHHHHHHHHHhhC-----CeEEeCCHHHHH-h
Confidence            35678999999999999999988765 77445577753          4555555544221     111111 22333 3


Q ss_pred             ccceeeeccc--cCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 014463          295 ECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD  347 (424)
Q Consensus       295 ~~DIliPaA~--~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD  347 (424)
                      ++||++-|.-  ...+..+..+ -.+-++.-|.+.|-..+..+.+.++|+.++-+
T Consensus       196 ~aDiVi~atp~~~~v~~~~~l~-~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD~  249 (312)
T 2i99_A          196 GADVIITVTLATEPILFGEWVK-PGAHINAVGASRPDWRELDDELMKEAVLYVDS  249 (312)
T ss_dssp             TCSEEEECCCCSSCCBCGGGSC-TTCEEEECCCCSTTCCSBCHHHHHHSEEEESC
T ss_pred             cCCEEEEEeCCCCcccCHHHcC-CCcEEEeCCCCCCCceeccHHHHhcCEEEECC
Confidence            6899997753  2233321111 13345555788886566667788889876654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.78  E-value=0.034  Score=56.63  Aligned_cols=105  Identities=21%  Similarity=0.298  Sum_probs=69.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.|+|+.|+|+|++|+.+|+.+...|.+|+ +.|.+...                ..+      +.+.. +.++++ 
T Consensus       140 ~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~-~~d~~~~~----------------~~~------~~~~~~~l~ell-  195 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVY-FYDIENKL----------------PLG------NATQVQHLSDLL-  195 (404)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCCC----------------CCT------TCEECSCHHHHH-
T ss_pred             ccccCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EEcCCchh----------------ccC------CceecCCHHHHH-
Confidence            456999999999999999999999999999998 45543210                000      12222 234444 


Q ss_pred             cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV  343 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~  343 (424)
                      ..||+++-|.-     .+.|+++....++ -.+++.-|-+.+ +.+| .+.|.+..|.
T Consensus       196 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  253 (404)
T 1sc6_A          196 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA  253 (404)
T ss_dssp             HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             hcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence            37899988753     3456665555554 357888888874 4443 4677776664

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.75  E-value=0.13  Score=51.28  Aligned_cols=32  Identities=28%  Similarity=0.544  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.++   ...||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~   37 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            4899999999999999999876   3899999885

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.72  E-value=0.022  Score=55.40  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=44.5

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHC--CCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEH--GGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~--GakVVaVsD~~  253 (424)
                      -.+.|.+|++..    +++.+.+++|++++|.|.|+ ||+.+|++|..+  |++|. +++++
T Consensus       137 ~~PcTp~gi~~l----l~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVt-v~h~~  193 (281)
T 2c2x_A          137 PLPCTPRGIVHL----LRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVT-LCHTG  193 (281)
T ss_dssp             CCCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEE-EECTT
T ss_pred             CCCChHHHHHHH----HHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEE-EEECc
Confidence            346899886655    45568899999999999997 699999999999  89877 77653

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.70  E-value=0.032  Score=52.97  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      +||+|.|+|++|+.+++.+.+.+..++++.|.++.-                .    .+++   .. +.++++  ++|++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~----~gv~---v~~dl~~l~--~~DVv   58 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T----TPYQ---QYQHIADVK--GADVA   58 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC----------------------CCSC---BCSCTTTCT--TCSEE
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c----CCCc---eeCCHHHHh--CCCEE
Confidence            689999999999999999988766999999986430                0    0111   11 224555  89999


Q ss_pred             eeccccCcccccccc-cccceEEEecCCCCCCHHHHHHHH----hCCceEeccc
Q 014463          300 VPCALGGVLNKENAA-DVKAKFIIEAANHPTDPEADEILS----KKGVVILPDI  348 (424)
Q Consensus       300 iPaA~~~~It~~na~-~i~akiIvEgAN~p~t~eA~~iL~----~rGI~viPD~  348 (424)
                      |-++...... +|+. +-+..+|++-.  .++++-.+.|.    +.+|++.|-|
T Consensus        59 IDft~p~a~~-~~~~l~~g~~vVigTT--G~s~e~~~~l~~aa~~~~v~~a~N~  109 (243)
T 3qy9_A           59 IDFSNPNLLF-PLLDEDFHLPLVVATT--GEKEKLLNKLDELSQNMPVFFSANM  109 (243)
T ss_dssp             EECSCHHHHH-HHHTSCCCCCEEECCC--SSHHHHHHHHHHHTTTSEEEECSSC
T ss_pred             EEeCChHHHH-HHHHHhcCCceEeCCC--CCCHHHHHHHHHHHhcCCEEEECCc
Confidence            9888766543 3443 22445666433  35554333333    3445555544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.66  E-value=0.052  Score=55.32  Aligned_cols=138  Identities=18%  Similarity=0.196  Sum_probs=78.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHE  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~  295 (424)
                      +.+|+|.|+|.+|+.+++.|.+.|..|+ |.|.          |.+.+....+..-.+ -|-+   .+..++|    -.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vv-vId~----------d~~~v~~~~~~g~~v-i~GD---at~~~~L~~agi~~   68 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMV-VLDH----------DPDHIETLRKFGMKV-FYGD---ATRMDLLESAGAAK   68 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEE-EEEC----------CHHHHHHHHHTTCCC-EESC---TTCHHHHHHTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEE-EEEC----------CHHHHHHHHhCCCeE-EEcC---CCCHHHHHhcCCCc
Confidence            4579999999999999999999999998 5566          345555444322111 1111   1223333    236


Q ss_pred             cceeeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCce-E-eccccccccCcchhhHHHhhhccc
Q 014463          296 CDVLVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGVV-I-LPDIYANSGGVTVSYFEWVQNIQG  368 (424)
Q Consensus       296 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~-v-iPD~laNaGGVi~s~~E~~qn~~~  368 (424)
                      +|++|-|.-....|   ...++++  +.++|+-.-|    ++-...|.+.|+- + -|.+. .+=-+....      +..
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~----~~~~~~L~~~Gad~Vi~~~~~-~a~~la~~~------L~~  137 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD----VDHYIRLRQAGVEKPERETFE-GALKTGRLA------LES  137 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS----HHHHHHHHHTTCSSCEETTHH-HHHHHHHHH------HHH
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC----HHHHHHHHHCCCCEEECccHH-HHHHHHHHH------HHH
Confidence            89888875443332   2233333  4578886544    5666789999973 3 33332 111111111      122


Q ss_pred             cCCCHHHHHHHHHHH
Q 014463          369 FMWEEEKVNHELKRY  383 (424)
Q Consensus       369 ~~w~~e~v~~~l~~~  383 (424)
                      +..+++++.+.++..
T Consensus       138 lg~~~~~~~~~~~~~  152 (413)
T 3l9w_A          138 LGLGPYEARERADVF  152 (413)
T ss_dssp             TTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHH
Confidence            345677777766654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.65  E-value=0.012  Score=56.81  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CCCCeEEEEecChHHHH-HHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          218 ISNMKFAIQGFGNVGSW-AAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      ++-.||+|+|+|++|+. .++.|.+ .++++++|+|.+          .+.+.+..++.+. ..|     -+.+++++ +
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~~~-~~~-----~~~~~ll~-~   66 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN----------KVKREKICSDYRI-MPF-----DSIESLAK-K   66 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC----------HHHHHHHHHHHTC-CBC-----SCHHHHHT-T
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC----------HHHHHHHHHHcCC-CCc-----CCHHHHHh-c
Confidence            34579999999999995 8887866 578999999974          4555555544321 112     13356777 9


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEecc
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILPD  347 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viPD  347 (424)
                      +|+++-|.- +..+.+.+..   -+..+++|=   |+  | .++++   ..+++|+.+...
T Consensus        67 ~D~V~i~tp-~~~h~~~~~~al~~gk~vl~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~  123 (308)
T 3uuw_A           67 CDCIFLHSS-TETHYEIIKILLNLGVHVYVDK---PLASTVSQGEELIELSTKKNLNLMVG  123 (308)
T ss_dssp             CSEEEECCC-GGGHHHHHHHHHHTTCEEEECS---SSSSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCEEEEeCC-cHhHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            999997743 3333333322   134578874   32  3 34443   345677665443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.65  E-value=0.015  Score=60.36  Aligned_cols=177  Identities=17%  Similarity=0.173  Sum_probs=99.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D  297 (424)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.+          .+.+.+..++.+....-...... +.+++...  ++|
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aD   70 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFNRT----------YSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR   70 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCC
Confidence            479999999999999999999999875 66653          34444444432211000001111 22344432  599


Q ss_pred             eeeeccccCccccccccc----c-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-------------h
Q 014463          298 VLVPCALGGVLNKENAAD----V-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-------------V  357 (424)
Q Consensus       298 IliPaA~~~~It~~na~~----i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-------------~  357 (424)
                      +++-|.-...-.++.++.    + .-++|+...|+..  +.+..+.+.++|+.++.-  ..+||..             -
T Consensus        71 vVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~gg~~  148 (478)
T 1pgj_A           71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM--GISGGEEGARKGPAFFPGGTL  148 (478)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE--EEESHHHHHHHCCEEEEEECH
T ss_pred             EEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEe--eccCCHHHHhcCCeEeccCCH
Confidence            999886554322222222    3 2468999999863  344456788889877632  2222211             1


Q ss_pred             hhHHHhhhc----cc--------cCCC-H-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463          358 SYFEWVQNI----QG--------FMWE-E-------EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG  410 (424)
Q Consensus       358 s~~E~~qn~----~~--------~~w~-~-------e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  410 (424)
                      ..++.++.+    ..        ..|- +       .-+...+...+...+.|.+..++..|++..+..-++.
T Consensus       149 ~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          149 SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            123333321    11        1121 0       1123344555567788888889999999877655543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.62  E-value=0.027  Score=55.78  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             CCCchhHHHHHHHHHHH--HH---HhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCc-eeCCCCCCHHH
Q 014463          194 GREAATGLGVFFATEAL--LA---EHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGA-IKNPNGIDVPA  266 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~--~~---~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~-i~~~~GlDi~~  266 (424)
                      +-.+.|.+|++..++..  .+   .+|.+++|++++|.|.|+ ||+.+|++|...|++|. |+|.+.. ++...      
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVt-v~nR~~~~l~~ra------  218 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRG------  218 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSEEEEEESC------
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEE-EEeCchHHHHhHH------
Confidence            34578999886654442  00   057889999999999996 69999999999999965 8887632 22111      


Q ss_pred             HHHHHHhcCCcccCCC-Ceeec-C--Cccc--ccccceeeeccccC--cccccccccccceEEEecCCCC
Q 014463          267 LLKYKKSNKSLNDFQG-GNAMD-L--NDLL--VHECDVLVPCALGG--VLNKENAADVKAKFIIEAANHP  328 (424)
Q Consensus       267 L~~~~~~~g~v~~~~~-~~~i~-~--~~ll--~~~~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p  328 (424)
                              ..+..... ...++ .  +++-  -.++||+|-|...-  .|+.+-++.  -.+|+.-|-.+
T Consensus       219 --------~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~--GavVIDVgi~r  278 (320)
T 1edz_A          219 --------ESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKE--GAVCINFACTK  278 (320)
T ss_dssp             --------CCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCT--TEEEEECSSSC
T ss_pred             --------HHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCC--CeEEEEcCCCc
Confidence                    00000000 00111 1  2332  24799999887633  488777653  35777776654

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.61  E-value=0.096  Score=52.47  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD  251 (424)
                      .||+|.|||.+|+.++|+|.++ ...||+|.|
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            5999999999999999999876 789999998

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.60  E-value=0.12  Score=50.85  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      -+.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|++.+..       +.++..++.++-+.  
T Consensus       131 D~~Gf~~~L~----~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~-------~~~~a~~la~~~~~--  197 (312)
T 3t4e_A          131 DGTGHIRAIK----ESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDD-------FFEKAVAFAKRVNE--  197 (312)
T ss_dssp             HHHHHHHHHH----HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST-------HHHHHHHHHHHHHH--
T ss_pred             cHHHHHHHHH----hcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCc-------hHHHHHHHHHHhhh--
Confidence            3677766654    4578899999999999999999999999999944447776411       12333333221100  


Q ss_pred             cCCC-CeeecCCcc---c--ccccceeeeccccCc--cccc----ccccc-cceEEEecCCCCC-CHHHHHHHHhCCceE
Q 014463          279 DFQG-GNAMDLNDL---L--VHECDVLVPCALGGV--LNKE----NAADV-KAKFIIEAANHPT-DPEADEILSKKGVVI  344 (424)
Q Consensus       279 ~~~~-~~~i~~~~l---l--~~~~DIliPaA~~~~--It~~----na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~v  344 (424)
                      .++. ...++.+++   -  -.++||+|-|.--+.  .+..    ....+ +..+|.+-.-+|. |+ --+.-+++|..+
T Consensus       198 ~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~  276 (312)
T 3t4e_A          198 NTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTK-LLQQAQQAGCKT  276 (312)
T ss_dssp             HSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCH-HHHHHHHTTCEE
T ss_pred             ccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCH-HHHHHHHCCCeE
Confidence            0110 012222332   1  137999995542221  1111    11223 3468899999885 55 333456788765


Q ss_pred             ec
Q 014463          345 LP  346 (424)
Q Consensus       345 iP  346 (424)
                      ++
T Consensus       277 ~~  278 (312)
T 3t4e_A          277 ID  278 (312)
T ss_dssp             EC
T ss_pred             EC
Confidence            43

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.56  E-value=0.25  Score=49.24  Aligned_cols=33  Identities=39%  Similarity=0.626  Sum_probs=29.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -.||.|-|||.+|+.++|.+.+.|.+||+|-|.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            358999999999999999998889999999775

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.53  E-value=0.12  Score=52.16  Aligned_cols=32  Identities=28%  Similarity=0.544  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.++   ...||+|.|.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~   37 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC
Confidence            4899999999999999999876   4899999885

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.52  E-value=0.028  Score=53.63  Aligned_cols=105  Identities=12%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..++ +       .... +.++++ .+||++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D~v   64 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVY-AFDLM----------EANVAAVVAQ-G-------AQACENNQKVA-AASDII   64 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHTT-T-------CEECSSHHHHH-HHCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hCCCEE
Confidence            689999999999999999999999876 66653          3344333332 1       1111 122333 379999


Q ss_pred             eeccccCcccc-------cccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEe
Q 014463          300 VPCALGGVLNK-------ENAADV-KAKFIIEAANHP--TDPEADEILSKKGVVIL  345 (424)
Q Consensus       300 iPaA~~~~It~-------~na~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~vi  345 (424)
                      |-|.-...-.+       +-.+.+ .-++|+.-+|+.  ...+..+.+.++|+.++
T Consensus        65 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99874332111       112223 246888888876  23445567888898876

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.48  E-value=0.017  Score=53.77  Aligned_cols=98  Identities=22%  Similarity=0.395  Sum_probs=64.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      +||+|+|+|++|+..++.|.+.|.++++++|.+..   .+     +                 ..-+.++++..++|+++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~---~~-----~-----------------~~~~~~~l~~~~~DvVv   55 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE---HE-----K-----------------MVRGIDEFLQREMDVAV   55 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC---CT-----T-----------------EESSHHHHTTSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc---hh-----h-----------------hcCCHHHHhcCCCCEEE
Confidence            47999999999999999998899999999997531   10     0                 01123455546899999


Q ss_pred             eccccCccccccccc-c--cceEEEecCCCCCCHHH-H---HHHHhCCceE
Q 014463          301 PCALGGVLNKENAAD-V--KAKFIIEAANHPTDPEA-D---EILSKKGVVI  344 (424)
Q Consensus       301 PaA~~~~It~~na~~-i--~akiIvEgAN~p~t~eA-~---~iL~~rGI~v  344 (424)
                      -|.-.. .+.+.+.. +  ...+|+|..-.+..+++ +   +..+++|+.+
T Consensus        56 ~~~~~~-~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~  105 (236)
T 2dc1_A           56 EAASQQ-AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRV  105 (236)
T ss_dssp             ECSCHH-HHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCE
T ss_pred             ECCCHH-HHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeE
Confidence            996533 44444433 2  45688876433334544 3   3456778764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.43  E-value=0.028  Score=53.13  Aligned_cols=164  Identities=18%  Similarity=0.124  Sum_probs=90.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|+|++|+.+++.|.+ |.+|+ +.|.+          .+.+.+..+.+  +      ...+.++++ .+||++|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~-~~~~~----------~~~~~~~~~~g--~------~~~~~~~~~-~~~D~vi   60 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTL-VWNRT----------FEKALRHQEEF--G------SEAVPLERV-AEARVIF   60 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEE-EECSS----------THHHHHHHHHH--C------CEECCGGGG-GGCSEEE
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEE-EEeCC----------HHHHHHHHHCC--C------cccCHHHHH-hCCCEEE
Confidence            479999999999999999998 99875 66653          23333333321  1      111133444 3799999


Q ss_pred             eccccCccccccc----cccc-ceEEEecCCCCC-C-HHHHHHHHhCCceEeccccccccCc----------ch----hh
Q 014463          301 PCALGGVLNKENA----ADVK-AKFIIEAANHPT-D-PEADEILSKKGVVILPDIYANSGGV----------TV----SY  359 (424)
Q Consensus       301 PaA~~~~It~~na----~~i~-akiIvEgAN~p~-t-~eA~~iL~~rGI~viPD~laNaGGV----------i~----s~  359 (424)
                      -|.-...-.++.+    +.++ -++|+.-.|... + .+..+.+.++|+.+++--  +.||.          ++    ..
T Consensus        61 ~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p--~~~~~~~~~~g~~~~~~~~~~~~  138 (289)
T 2cvz_A           61 TCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP--VSGGTSGAEAGTLTVMLGGPEEA  138 (289)
T ss_dssp             ECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC--EESHHHHHHHTCEEEEEESCHHH
T ss_pred             EeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEec--CCCChhHHhhCCeEEEECCCHHH
Confidence            8876443122211    2232 357777777542 2 344567777888776421  22221          11    12


Q ss_pred             HHHhhhccc----cCCC----HHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 014463          360 FEWVQNIQG----FMWE----EEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAF  407 (424)
Q Consensus       360 ~E~~qn~~~----~~w~----~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~  407 (424)
                      ++.++.+-.    ..|.    ...    +...+...+...+.+.+..+++.|+++.++..
T Consensus       139 ~~~~~~ll~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~  198 (289)
T 2cvz_A          139 VERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALE  198 (289)
T ss_dssp             HHHHGGGCTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHH
Confidence            344433211    1111    111    12233334567777888889999998865433

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=95.40  E-value=0.14  Score=50.91  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+++.|.++    ...||+|.|.
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~   37 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC
Confidence            4899999999999999999877    5899999994

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.37  E-value=0.03  Score=52.64  Aligned_cols=94  Identities=16%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      ++.+++|+|+|.|++|+.+++.|.+.|.++|.+.|.+          .+.+.+..++.+       .... +.++++ .+
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~----------~~~~~~~~~~~g-------~~~~~~~~~~~-~~   68 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT----------EESARELAQKVE-------AEYTTDLAEVN-PY   68 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS----------HHHHHHHHHHTT-------CEEESCGGGSC-SC
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC----------HHHHHHHHHHcC-------CceeCCHHHHh-cC
Confidence            3556799999999999999999999899867687763          344444443322       1112 223444 37


Q ss_pred             cceeeeccccCccccccccc----c-cceEEEecCCCCC
Q 014463          296 CDVLVPCALGGVLNKENAAD----V-KAKFIIEAANHPT  329 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~----i-~akiIvEgAN~p~  329 (424)
                      ||++|-|.-...+ .+.+..    + .-++|+..+|+..
T Consensus        69 ~Dvvi~av~~~~~-~~v~~~l~~~~~~~~ivv~~s~~~~  106 (266)
T 3d1l_A           69 AKLYIVSLKDSAF-AELLQGIVEGKREEALMVHTAGSIP  106 (266)
T ss_dssp             CSEEEECCCHHHH-HHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred             CCEEEEecCHHHH-HHHHHHHHhhcCCCcEEEECCCCCc
Confidence            9999999765543 333332    2 3468888888754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.37  E-value=0.084  Score=50.85  Aligned_cols=118  Identities=15%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      -+.|...+++.    .|    ++++.|.|.|.+|+.++..|.+.|.+|+ |.+.+-     +  ..++|.    +.+   
T Consensus       105 D~~Gf~~~L~~----~~----~k~vlvlGaGGaaraia~~L~~~G~~v~-V~nRt~-----~--ka~~la----~~~---  161 (269)
T 3phh_A          105 DALGFYLSLKQ----KN----YQNALILGAGGSAKALACELKKQGLQVS-VLNRSS-----R--GLDFFQ----RLG---  161 (269)
T ss_dssp             HHHHHHHHCC-----------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC-----T--THHHHH----HHT---
T ss_pred             hHHHHHHHHHH----cC----CCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCH-----H--HHHHHH----HCC---
Confidence            37787777654    23    8899999999999999999999997765 777642     1  123332    111   


Q ss_pred             cCCCCeeecCCcccccccceeeecc---ccC--cccccccc-cc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCA---LGG--VLNKENAA-DV-KAKFIIEAANHPTDPEADEILSKKGVVILP  346 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA---~~~--~It~~na~-~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP  346 (424)
                          ....+.+++-  ++||+|-|.   +..  .+..+-.. .+ ...+|++-.-+|.|+ --+..+++|+.+++
T Consensus       162 ----~~~~~~~~l~--~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P~T~-ll~~A~~~G~~~~~  229 (269)
T 3phh_A          162 ----CDCFMEPPKS--AFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTP-FLSLAKELKTPFQD  229 (269)
T ss_dssp             ----CEEESSCCSS--CCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSSCCH-HHHHHHHTTCCEEC
T ss_pred             ----CeEecHHHhc--cCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCCchH-HHHHHHHCcCEEEC
Confidence                1223334432  899999554   322  23333111 12 346889998888444 55567788887554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.35  E-value=0.044  Score=53.00  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      --+.|...+++    ..+.+++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+..          +..       .+
T Consensus        99 TD~~G~~~~L~----~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~----------~a~-------~l  157 (277)
T 3don_A           99 TDGIGYVNGLK----QIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS----------RFN-------NW  157 (277)
T ss_dssp             CHHHHHHHHHH----HHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG----------GGT-------TC
T ss_pred             ChHHHHHHHHH----HhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH----------HHH-------HH
Confidence            34777766654    4577899999999999999999999999999933347776521          110       11


Q ss_pred             ccCCCCeeecCCccc--ccccceeeecccc---Cccccc-ccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEec
Q 014463          278 NDFQGGNAMDLNDLL--VHECDVLVPCALG---GVLNKE-NAADV-KAKFIIEAANHPT-DPEADEILSKKGVVILP  346 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll--~~~~DIliPaA~~---~~It~~-na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viP  346 (424)
                      ..  .....+-+++-  -.++||+|-|.--   ...... ....+ ...+|++-.-+|. |+ --+..+++|+.+++
T Consensus       158 a~--~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T~-ll~~A~~~G~~~~~  231 (277)
T 3don_A          158 SL--NINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTP-ILIEAEQRGNPIYN  231 (277)
T ss_dssp             CS--CCEEECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSCH-HHHHHHHTTCCEEC
T ss_pred             HH--hcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCCH-HHHHHHHCcCEEeC
Confidence            10  01111111221  2468999866422   111100 11223 3468899987784 65 44567889987543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.35  E-value=0.024  Score=55.06  Aligned_cols=107  Identities=17%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             CeEEEEecChHHHHH-HHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccce
Q 014463          221 MKFAIQGFGNVGSWA-AKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~-a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~DI  298 (424)
                      .||+|+|+|++|+.. ++.|.+.+.++++|+|.+          .+...+..++.+....|     -+.++++. .++|+
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~----------~~~~~~~~~~~g~~~~~-----~~~~~~l~~~~~D~   65 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTS----------AERGAAYATENGIGKSV-----TSVEELVGDPDVDA   65 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC----------HHHHHHHHHHTTCSCCB-----SCHHHHHTCTTCCE
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCCCE
Confidence            479999999999987 777766889999999974          44554544443211111     12345665 47999


Q ss_pred             eeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEec
Q 014463          299 LVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVILP  346 (424)
Q Consensus       299 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~viP  346 (424)
                      ++-|.- +..+.+.+.. +  ...+++|-   |+  | .+++++   .+++|+.+..
T Consensus        66 V~i~tp-~~~h~~~~~~al~~Gk~v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~~  118 (332)
T 2glx_A           66 VYVSTT-NELHREQTLAAIRAGKHVLCEK---PLAMTLEDAREMVVAAREAGVVLGT  118 (332)
T ss_dssp             EEECSC-GGGHHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEEeCC-hhHhHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            998854 3333333322 2  33477763   43  3 344443   4567776543

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.25  E-value=0.017  Score=59.68  Aligned_cols=122  Identities=18%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCCCCCHHHH------
Q 014463          197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPNGIDVPAL------  267 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~GlDi~~L------  267 (424)
                      .-||--+..++..+++..|.++++.||++.|.|..|-.+|++|.+.|.   +|+ ++|++|.|+.... |+...      
T Consensus       196 qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~-l~D~~Gli~~~R~-~l~~~~~~~~k  273 (487)
T 3nv9_A          196 QGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIV-MFDSKGSLHNGRE-DIKKDTRFYRK  273 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEETTEECCTTCH-HHHHCGGGHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEE-EEeccccccCCcc-hhhhhcccHHH
Confidence            467777788888899988999999999999999999999999999998   565 8999999986431 12111      


Q ss_pred             HHHHHhcCCcccCCCCeeecCCcccccccceeeeccc--cCcccccccccccc-eEEEecCCC
Q 014463          268 LKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL--GGVLNKENAADVKA-KFIIEAANH  327 (424)
Q Consensus       268 ~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~--~~~It~~na~~i~a-kiIvEgAN~  327 (424)
                      .++.+.+.     +. ..-+-.|.+. .+||||=++.  ++.+|++-++...- .||.--||-
T Consensus       274 ~~~A~~~n-----~~-~~~~L~eav~-~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNP  329 (487)
T 3nv9_A          274 WEICETTN-----PS-KFGSIAEACV-GADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANP  329 (487)
T ss_dssp             HHHHHHSC-----TT-CCCSHHHHHT-TCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSS
T ss_pred             HHHHHhcc-----cc-cCCCHHHHHh-cCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCC
Confidence            11111111     00 0011123333 3599998883  58999998887743 477778884

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.24  E-value=0.17  Score=50.17  Aligned_cols=32  Identities=34%  Similarity=0.632  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|.|||-+|+.++|+|.++   ...||+|.|.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~   35 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4899999999999999998765   5899999884

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.22  E-value=0.03  Score=57.92  Aligned_cols=172  Identities=12%  Similarity=0.133  Sum_probs=99.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D  297 (424)
                      ++|+|+|.|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..++.+.    .+.... +.+++...  ++|
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~----~gi~~~~s~~e~v~~l~~aD   70 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVA-IYNRT----------TSKTEEVFKEHQD----KNLVFTKTLEEFVGSLEKPR   70 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------HHHHHHHHHHTTT----SCEEECSSHHHHHHTBCSSC
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEE-EEcCC----------HHHHHHHHHhCcC----CCeEEeCCHHHHHhhccCCC
Confidence            689999999999999999999999875 66653          3444444443210    111111 22344432  599


Q ss_pred             eeeeccccCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-------------h
Q 014463          298 VLVPCALGGVLNKENA----ADVK-AKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-------------V  357 (424)
Q Consensus       298 IliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-------------~  357 (424)
                      ++|-|.-.+...++.+    +.++ -++|+..+|+..  +.+..+.+.++|+.++.-  .++||..             -
T Consensus        71 vVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~gg~~  148 (474)
T 2iz1_A           71 RIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGT--GVSGGEKGALLGPSMMPGGQK  148 (474)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEE--EECSHHHHHHHCCCEEEEECH
T ss_pred             EEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECC--CCCCChhhhccCCeEEecCCH
Confidence            9998865543222222    2332 368999999863  344446677789887632  3333321             1


Q ss_pred             hhHHHhhh----ccc---------cCCCH--------HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 014463          358 SYFEWVQN----IQG---------FMWEE--------EKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFTL  409 (424)
Q Consensus       358 s~~E~~qn----~~~---------~~w~~--------e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  409 (424)
                      ..++.++.    ...         ..|-.        .-+...+...+...+.|.+..+++ .|++..+..-+.
T Consensus       149 ~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~  222 (474)
T 2iz1_A          149 EAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIF  222 (474)
T ss_dssp             HHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            12333322    111         11211        123444555567788888888998 799987765554

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.21  E-value=0.017  Score=56.68  Aligned_cols=106  Identities=12%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~DI  298 (424)
                      .||+|+|+|++|+..++.|.+. +.++++|+|.+          .+.+.+..++.+ +..|     -+.+++++ .++|+
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~~-----~~~~~~l~~~~~D~   68 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF----------IEGAQRLAEANG-AEAV-----ASPDEVFARDDIDG   68 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHTTT-CEEE-----SSHHHHTTCSCCCE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHcC-Ccee-----CCHHHHhcCCCCCE
Confidence            5899999999999999988875 78999999974          445555444433 2111     12355664 57899


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEec
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILP  346 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viP  346 (424)
                      ++-|. .+..+.+.+..   -+..+++|-   |+  | .++++   ..+++|+.+..
T Consensus        69 V~i~t-p~~~h~~~~~~al~~gk~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v  121 (344)
T 3euw_A           69 IVIGS-PTSTHVDLITRAVERGIPALCEK---PIDLDIEMVRACKEKIGDGASKVML  121 (344)
T ss_dssp             EEECS-CGGGHHHHHHHHHHTTCCEEECS---CSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred             EEEeC-CchhhHHHHHHHHHcCCcEEEEC---CCCCCHHHHHHHHHHHHhcCCeEEe
Confidence            98874 33333333332   134577875   42  3 34443   34466665543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.17  E-value=0.015  Score=57.13  Aligned_cols=109  Identities=18%  Similarity=0.339  Sum_probs=65.0

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~DI  298 (424)
                      .||+|+|+|++|...++.|.+ .+.++++|+|.+          .+.+.+..++.+....|     -+.++++. .++|+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~D~   67 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR----------EDRLREMKEKLGVEKAY-----KDPHELIEDPNVDA   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSC----------HHHHHHHHHHHTCSEEE-----SSHHHHHHCTTCCE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHhCCCcee-----CCHHHHhcCCCCCE
Confidence            589999999999999998876 478999999974          44555544443211111     23356665 37899


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEeccc
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILPDI  348 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viPD~  348 (424)
                      ++-|. .+..+.+.+..   -...+++|=   |+  | .++++   ..+++|+.+...+
T Consensus        68 V~i~t-p~~~h~~~~~~al~~gk~v~~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~~  122 (344)
T 3ezy_A           68 VLVCS-STNTHSELVIACAKAKKHVFCEK---PLSLNLADVDRMIEETKKADVILFTGF  122 (344)
T ss_dssp             EEECS-CGGGHHHHHHHHHHTTCEEEEES---CSCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             EEEcC-CCcchHHHHHHHHhcCCeEEEEC---CCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence            98774 33333333222   134577774   32  2 33433   3456676655433

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.14  E-value=0.078  Score=49.49  Aligned_cols=97  Identities=14%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DI  298 (424)
                      ++|+|+|.|++|+.+++.|.+.| ..|+ +.|.+          .+.+.+..++.+       .... +.++.+  +||+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~-~~~r~----------~~~~~~~~~~~g-------~~~~~~~~~~~--~~D~   60 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IANRG----------AEKRERLEKELG-------VETSATLPELH--SDDV   60 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEE-EECSS----------HHHHHHHHHHTC-------CEEESSCCCCC--TTSE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEE-EECCC----------HHHHHHHHHhcC-------CEEeCCHHHHh--cCCE
Confidence            47999999999999999999989 7765 66653          344444443321       1222 334555  8999


Q ss_pred             eeeccccCcccccccccc--cceEEEecCCCCCCHHHHHHHH
Q 014463          299 LVPCALGGVLNKENAADV--KAKFIIEAANHPTDPEADEILS  338 (424)
Q Consensus       299 liPaA~~~~It~~na~~i--~akiIvEgAN~p~t~eA~~iL~  338 (424)
                      +|-|.-... .++.+..+  +-++|+.-+|+-......+.+.
T Consensus        61 vi~~v~~~~-~~~v~~~l~~~~~ivv~~~~g~~~~~l~~~~~  101 (263)
T 1yqg_A           61 LILAVKPQD-MEAACKNIRTNGALVLSVAAGLSVGTLSRYLG  101 (263)
T ss_dssp             EEECSCHHH-HHHHHTTCCCTTCEEEECCTTCCHHHHHHHTT
T ss_pred             EEEEeCchh-HHHHHHHhccCCCEEEEecCCCCHHHHHHHcC
Confidence            998865222 22222222  2467888766543233334444

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.12  E-value=0.19  Score=49.93  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHHH---C-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE---H-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~---~-GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.+   + ...||+|.|.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~   38 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL   38 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC
Confidence            489999999999999999987   4 7899999884

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.12  E-value=0.03  Score=58.06  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH-hcCCcccCCCCeee-cCCcccc--ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK-SNKSLNDFQGGNAM-DLNDLLV--HEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~-~~g~v~~~~~~~~i-~~~~ll~--~~~  296 (424)
                      ++|+|+|.|++|+.+|..|.+.|.+|+ +.|.+          .+.+.+..+ +..   + .+.... +.+++..  .++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~---g-~gi~~~~~~~e~v~~l~~a   67 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANEAK---G-TKVLGAHSLEEMVSKLKKP   67 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTTTT---T-SSCEECSSHHHHHHHBCSS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHhcccc---C-CCeEEeCCHHHHHhhccCC
Confidence            579999999999999999999999875 66653          234444433 110   0 111111 2234443  379


Q ss_pred             ceeeeccccCcccccccc----ccc-ceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCcc-------------
Q 014463          297 DVLVPCALGGVLNKENAA----DVK-AKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVT-------------  356 (424)
Q Consensus       297 DIliPaA~~~~It~~na~----~i~-akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGVi-------------  356 (424)
                      |++|-|--...-.++.+.    .++ -++|+...|+..  +.+..+.|.++|+.++.-  .++||..             
T Consensus        68 DvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~--pv~g~~~~a~~g~~i~~gg~  145 (482)
T 2pgd_A           68 RRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS--GVSGGEDGARYGPSLMPGGN  145 (482)
T ss_dssp             CEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEEC
T ss_pred             CEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCC--CCCCChhhhccCCeEEeCCC
Confidence            999988655432223222    233 368999999864  334456788889877632  2233221             


Q ss_pred             hhhHHHhhh----cccc--------CCC--------HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Q 014463          357 VSYFEWVQN----IQGF--------MWE--------EEKVNHELKRYMMSAFKDIKTMCQTH-NCNLRMGAFTLG  410 (424)
Q Consensus       357 ~s~~E~~qn----~~~~--------~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~~-~~~~r~aA~~~A  410 (424)
                      -..++.++.    ....        .|-        -.-+...+...+...+.|.+..+++. |++..+..-++.
T Consensus       146 ~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          146 KEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             TTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence            112333332    1110        121        01233445555567888888889998 999877665543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.04  E-value=0.31  Score=50.01  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc---------CCCCe
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND---------FQGGN  284 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~---------~~~~~  284 (424)
                      +++..+-++|+|+|.|.||..+|..|.+ |..|+ +.|.+          .+.+.+..+....+.+         -.+.-
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~-~~D~~----------~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l   97 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVV-ALDIV----------QAKVDMLNQKISPIVDKEIQEYLAEKPLNF   97 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEE-EECSC----------HHHHHHHHTTCCSSCCHHHHHHHHHSCCCE
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEE-EEecC----------HHHhhHHhccCCccccccHHHHHhhccCCe
Confidence            3444556799999999999999999987 99988 55654          2333222221100000         00111


Q ss_pred             eecC--CcccccccceeeeccccCccccc---------------ccccc--cceEEEecCCCC-CCHHHHHHHHhCCceE
Q 014463          285 AMDL--NDLLVHECDVLVPCALGGVLNKE---------------NAADV--KAKFIIEAANHP-TDPEADEILSKKGVVI  344 (424)
Q Consensus       285 ~i~~--~~ll~~~~DIliPaA~~~~It~~---------------na~~i--~akiIvEgAN~p-~t~eA~~iL~~rGI~v  344 (424)
                      ..+.  ++. -.+||++|-|.-.. .+.+               -++ +  .+-+|.+..-.| +|.+..+.|.+.++.+
T Consensus        98 ~~ttd~~ea-~~~aDvViiaVPt~-~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~  174 (432)
T 3pid_A           98 RATTDKHDA-YRNADYVIIATPTD-YDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIF  174 (432)
T ss_dssp             EEESCHHHH-HTTCSEEEECCCCE-EETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEE
T ss_pred             EEEcCHHHH-HhCCCEEEEeCCCc-cccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEee
Confidence            1222  122 24799999885332 2211               111 2  334555555555 4566677888999999


Q ss_pred             eccccc
Q 014463          345 LPDIYA  350 (424)
Q Consensus       345 iPD~la  350 (424)
                      .|.++.
T Consensus       175 sPe~~~  180 (432)
T 3pid_A          175 SPEFLR  180 (432)
T ss_dssp             CCCCCC
T ss_pred             cCccCC
Confidence            999863

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.04  E-value=0.057  Score=51.42  Aligned_cols=168  Identities=19%  Similarity=0.270  Sum_probs=91.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++ .+||++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D~v   65 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSDRN----------PEAIADVIAA-G-------AETASTAKAIA-EQCDVI   65 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHT-T-------CEECSSHHHHH-HHCSEE
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hCCCEE
Confidence            589999999999999999999999875 66653          3344443332 1       1111 122333 379999


Q ss_pred             eeccccCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEecc-cccc-----ccCcc--h----
Q 014463          300 VPCALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPD-IYAN-----SGGVT--V----  357 (424)
Q Consensus       300 iPaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD-~laN-----aGGVi--~----  357 (424)
                      +-|.-...-.++-       .+.+ .-++|+.-+|+..  +.+..+.+.++|+.++.- +..+     .|++.  +    
T Consensus        66 i~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~  145 (299)
T 1vpd_A           66 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDK  145 (299)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCH
T ss_pred             EEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCH
Confidence            9886533211111       1223 2357888888763  234456788888876521 1111     11211  1    


Q ss_pred             hhHHHhhhcc---c--cCC----CHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014463          358 SYFEWVQNIQ---G--FMW----EEEKV----NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFT  408 (424)
Q Consensus       358 s~~E~~qn~~---~--~~w----~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~  408 (424)
                      ..++.++.+-   +  ..+    .....    ..-+...+...+.+.+..+++.|+++.++.-.
T Consensus       146 ~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~  209 (299)
T 1vpd_A          146 AIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQA  209 (299)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            1233333210   0  111    11111    22233344567777888889999988665443

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.02  E-value=0.18  Score=49.99  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|.|||-+|+.++|+|.++ ...||+|.|.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            4899999999999999999876 6899999985

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=94.90  E-value=0.033  Score=54.18  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=65.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccce
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~DI  298 (424)
                      .||+|+|+|++|...++.|.+. +.++++|+|.+          .+.+.+..++.+ +. |     -+.++++. .++|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~-~~-~-----~~~~~~l~~~~~D~   66 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF----------PAAAEAIAGAYG-CE-V-----RTIDAIEAAADIDA   66 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTT-CE-E-----CCHHHHHHCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC----------HHHHHHHHHHhC-CC-c-----CCHHHHhcCCCCCE
Confidence            5899999999999999988874 89999999974          445555544432 21 2     23356664 37899


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEecc
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILPD  347 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viPD  347 (424)
                      ++-|. .+..+.+.+..   -+..+++|-   |+  | .++++   ..+++|+.+...
T Consensus        67 V~i~t-p~~~h~~~~~~al~~gk~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~  120 (331)
T 4hkt_A           67 VVICT-PTDTHADLIERFARAGKAIFCEK---PIDLDAERVRACLKVVSDTKAKLMVG  120 (331)
T ss_dssp             EEECS-CGGGHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred             EEEeC-CchhHHHHHHHHHHcCCcEEEec---CCCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            88774 33333333322   144677775   42  3 34443   345777765543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.89  E-value=0.048  Score=53.01  Aligned_cols=108  Identities=14%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~D  297 (424)
                      -++|+|+|.|++|..+|+.|.+.|. .|+ +.|.+-        +.+.+.... +.+       ....+ ..+++ .+||
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~-~~dr~~--------~~~~~~~~~-~~g-------~~~~~~~~e~~-~~aD   85 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMA-AYDAAS--------AESWRPRAE-ELG-------VSCKASVAEVA-GECD   85 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEE-EECSSC--------HHHHHHHHH-HTT-------CEECSCHHHHH-HHCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEE-EEcCCC--------CHHHHHHHH-HCC-------CEEeCCHHHHH-hcCC
Confidence            4689999999999999999999998 766 667631        112222222 221       22222 22333 4799


Q ss_pred             eeeeccccCccccccccc----c-cceEEEecCCCC--CCHHHHHHHHhC--CceEec
Q 014463          298 VLVPCALGGVLNKENAAD----V-KAKFIIEAANHP--TDPEADEILSKK--GVVILP  346 (424)
Q Consensus       298 IliPaA~~~~It~~na~~----i-~akiIvEgAN~p--~t~eA~~iL~~r--GI~viP  346 (424)
                      ++|-|--.....+ .+..    + .-++|+...+..  ++.+..+.+.++  |+.++.
T Consensus        86 vVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd  142 (312)
T 3qsg_A           86 VIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA  142 (312)
T ss_dssp             EEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence            9998865443322 2222    2 235777665543  233444567777  887764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.86  E-value=0.033  Score=44.83  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~  252 (424)
                      .+++|+|.|.|.+|+.+++.|.+.| .+|+ +.|.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-~~~r   37 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVT-VADH   37 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEE-EEES
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEE-EEeC
Confidence            4579999999999999999999999 7776 5665

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.048  Score=56.94  Aligned_cols=172  Identities=15%  Similarity=0.174  Sum_probs=100.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH-hcCCcccCCCCeee-cCCccccc--cc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK-SNKSLNDFQGGNAM-DLNDLLVH--EC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~-~~g~v~~~~~~~~i-~~~~ll~~--~~  296 (424)
                      .+|+|+|.|++|+.+|+.|.+.|.+|+ +.|.+          .+.+.+..+ +.+   + .+.... +.+++...  +|
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~-v~dr~----------~~~~~~l~~~~~~---~-~gi~~~~s~~e~v~~l~~a   75 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVC-AYNRT----------QSKVDHFLANEAK---G-KSIIGATSIEDFISKLKRP   75 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------SHHHHHHHHTTTT---T-SSEECCSSHHHHHHTSCSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHccccc---C-CCeEEeCCHHHHHhcCCCC
Confidence            589999999999999999999999876 66654          234444443 211   0 011111 22333322  49


Q ss_pred             ceeeeccccCccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCceEeccccccccCc-------------c
Q 014463          297 DVLVPCALGGVLNKENA----ADVK-AKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGV-------------T  356 (424)
Q Consensus       297 DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~laNaGGV-------------i  356 (424)
                      |++|-|--.+...++.+    +.++ -++|+...|...  +.+..+.|.++|+.++.-  .-+||.             .
T Consensus        76 DvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~--pVsgg~~~a~~G~~im~gg~  153 (497)
T 2p4q_A           76 RKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGS--GVSGGEEGARYGPSLMPGGS  153 (497)
T ss_dssp             CEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEEC
T ss_pred             CEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCC--CcccChhHhhcCCeEEecCC
Confidence            99998865543222222    3333 369999999864  344556788899987632  112221             1


Q ss_pred             hhhHHHhhhc----cc-------cCCC----H----HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 014463          357 VSYFEWVQNI----QG-------FMWE----E----EKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFTL  409 (424)
Q Consensus       357 ~s~~E~~qn~----~~-------~~w~----~----e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~  409 (424)
                      -..+|.++.+    ..       ..|-    .    .-+...+...+...+.+.+..+++ .|+++.+..-++
T Consensus       154 ~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          154 EEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             GGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            1223433321    11       1121    1    123445555667888888889999 599988776554

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.77  E-value=0.032  Score=55.42  Aligned_cols=81  Identities=23%  Similarity=0.192  Sum_probs=53.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL  291 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l  291 (424)
                      .+|+|.|+|+||+.+++.|.+.         +.+|++|+|++-  .++.+++..                 ...-+.+++
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~--~~~~~~~~~-----------------~~~~d~~~l   64 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDP--RKPRAIPQE-----------------LLRAEPFDL   64 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCT--TSCCSSCGG-----------------GEESSCCCC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCH--HHhhccCcc-----------------cccCCHHHH
Confidence            5899999999999999999765         579999999862  233333211                 011244677


Q ss_pred             cccccceeeeccccCcccccccc-cc--cceEEE
Q 014463          292 LVHECDVLVPCALGGVLNKENAA-DV--KAKFII  322 (424)
Q Consensus       292 l~~~~DIliPaA~~~~It~~na~-~i--~akiIv  322 (424)
                      +  ++|+++.|.-......+.+. -+  +.-+|+
T Consensus        65 l--~iDvVve~t~~~~~a~~~~~~AL~aGKhVVt   96 (332)
T 2ejw_A           65 L--EADLVVEAMGGVEAPLRLVLPALEAGIPLIT   96 (332)
T ss_dssp             T--TCSEEEECCCCSHHHHHHHHHHHHTTCCEEE
T ss_pred             h--CCCEEEECCCCcHHHHHHHHHHHHcCCeEEE
Confidence            7  99999999654433333333 22  334666

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.76  E-value=0.42  Score=45.64  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVH  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~  294 (424)
                      +.++|+|+|.|++|+.+++.|.+.|.   .|+ ++|.+          .+.+.+..++.       +....+ +.+.+ .
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~-v~dr~----------~~~~~~l~~~~-------gi~~~~~~~~~~-~   62 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRIC-VTNRS----------LDKLDFFKEKC-------GVHTTQDNRQGA-L   62 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEE-EECSS----------SHHHHHHHHTT-------CCEEESCHHHHH-S
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEE-EEeCC----------HHHHHHHHHHc-------CCEEeCChHHHH-h
Confidence            34789999999999999999999997   665 67764          23444444431       122222 22333 4


Q ss_pred             ccceeeeccccCccccccccc-----ccce-EEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 014463          295 ECDVLVPCALGGVLNKENAAD-----VKAK-FIIEAANHPTDPEADEILSK--KGVVILPDIY  349 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~-----i~ak-iIvEgAN~p~t~eA~~iL~~--rGI~viPD~l  349 (424)
                      ++|++|.|.-...+ .+.++.     ++.+ +|+--+++-......+.|..  +=|.+.|-.-
T Consensus        63 ~aDvVilav~p~~~-~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p  124 (280)
T 3tri_A           63 NADVVVLAVKPHQI-KMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTP  124 (280)
T ss_dssp             SCSEEEECSCGGGH-HHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGG
T ss_pred             cCCeEEEEeCHHHH-HHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCCh
Confidence            79999998744332 222222     3344 77766665433344445542  2245556543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.69  E-value=0.059  Score=50.34  Aligned_cols=104  Identities=16%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|++|+.+++.|.+.|..| .+.|.+          .+.+.+..++.+ +..+     -+.++++. ++|+++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v-~~~~~~----------~~~~~~~~~~~g-~~~~-----~~~~~~~~-~~D~Vi   65 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHEL-IISGSS----------LERSKEIAEQLA-LPYA-----MSHQDLID-QVDLVI   65 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEE-EEECSS----------HHHHHHHHHHHT-CCBC-----SSHHHHHH-TCSEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeE-EEECCC----------HHHHHHHHHHcC-CEee-----CCHHHHHh-cCCEEE
Confidence            58999999999999999999989765 477763          344444443322 1111     12234443 899999


Q ss_pred             eccccCcccccccccc-cceEEEecCCCCCCHHHHHHHHhCCceE
Q 014463          301 PCALGGVLNKENAADV-KAKFIIEAANHPTDPEADEILSKKGVVI  344 (424)
Q Consensus       301 PaA~~~~It~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~v  344 (424)
                      -|.- .....+-+..+ .-++|++-.++....+..+.+ .++..+
T Consensus        66 ~~v~-~~~~~~v~~~l~~~~~vv~~~~~~~~~~l~~~~-~~~~~~  108 (259)
T 2ahr_A           66 LGIK-PQLFETVLKPLHFKQPIISMAAGISLQRLATFV-GQDLPL  108 (259)
T ss_dssp             ECSC-GGGHHHHHTTSCCCSCEEECCTTCCHHHHHHHH-CTTSCE
T ss_pred             EEeC-cHhHHHHHHHhccCCEEEEeCCCCCHHHHHHhc-CCCCCE
Confidence            8865 33333333334 335888887764433444444 345433

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.69  E-value=0.75  Score=47.16  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.+.|..|+ +.|.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~-~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVR-CIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEE-EEECC
Confidence            689999999999999999999999998 56753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.67  E-value=0.069  Score=50.76  Aligned_cols=109  Identities=16%  Similarity=0.067  Sum_probs=64.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCccccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVHEC  296 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~~~~  296 (424)
                      -++|+|+|+|++|+.+++.|.+.  |.+|+ +.|.+          .+.+....+ .+...     .. .+.++.+ .+|
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~----------~~~~~~~~~-~g~~~-----~~~~~~~~~~-~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYNRS----------DRSRDIALE-RGIVD-----EATADFKVFA-ALA   67 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSS----------HHHHHHHHH-TTSCS-----EEESCTTTTG-GGC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEcCC----------HHHHHHHHH-cCCcc-----cccCCHHHhh-cCC
Confidence            36899999999999999999887  56765 55653          333333322 22110     11 1334444 489


Q ss_pred             ceeeeccccCcccccccc----c-c-cceEEEecCCCCC--CHHHHHHHHhCCceEecc
Q 014463          297 DVLVPCALGGVLNKENAA----D-V-KAKFIIEAANHPT--DPEADEILSKKGVVILPD  347 (424)
Q Consensus       297 DIliPaA~~~~It~~na~----~-i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD  347 (424)
                      |++|-|.-...+ .+-+.    . + .-.+|+..+|...  +....+.|.++++.++|.
T Consensus        68 DvVilavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~  125 (290)
T 3b1f_A           68 DVIILAVPIKKT-IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGS  125 (290)
T ss_dssp             SEEEECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEE
T ss_pred             CEEEEcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEe
Confidence            999999754443 22222    2 3 2357887777643  233344555458888773

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=94.65  E-value=0.078  Score=51.64  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHH-H-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-c
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFH-E-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-H  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~  294 (424)
                      +-.+|+|+|+|++|...++.|. + .++++++|+|.+          .+.+.+..++.+.      .... +.++++. .
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~----------~~~~~~~a~~~g~------~~~~~~~~~~l~~~   70 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD----------SNQLEWAKNELGV------ETTYTNYKDMIDTE   70 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC----------HHHHHHHHHTTCC------SEEESCHHHHHTTS
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC----------HHHHHHHHHHhCC------CcccCCHHHHhcCC
Confidence            3468999999999999998887 4 478999999974          4455444443321      1222 2245665 4


Q ss_pred             ccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhC-CceEec
Q 014463          295 ECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKK-GVVILP  346 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~r-GI~viP  346 (424)
                      ++|+++-|.- +..+.+.+.. +  +..+++|-   |+  + .+++++   .+++ |+.+..
T Consensus        71 ~~D~V~i~tp-~~~h~~~~~~al~~G~~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~~  128 (346)
T 3cea_A           71 NIDAIFIVAP-TPFHPEMTIYAMNAGLNVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQS  128 (346)
T ss_dssp             CCSEEEECSC-GGGHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred             CCCEEEEeCC-hHhHHHHHHHHHHCCCEEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence            7999998843 3333333332 2  33577764   43  3 344444   3567 776654

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=94.54  E-value=0.042  Score=54.08  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc-ccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL-VHECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~D  297 (424)
                      ..||+|+|+|++|+..++.|.+. +.++++|+|.+          .+.+.+..++.+ +..|     -+.++++ ..++|
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~----------~~~~~~~~~~~g-~~~~-----~~~~~~l~~~~~D   68 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT----------EDKREKFGKRYN-CAGD-----ATMEALLAREDVE   68 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS----------HHHHHHHHHHHT-CCCC-----SSHHHHHHCSSCC
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC----------HHHHHHHHHHcC-CCCc-----CCHHHHhcCCCCC
Confidence            36899999999999999998876 89999999974          455555444432 2212     1235666 35789


Q ss_pred             eeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCceEec
Q 014463          298 VLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKKGVVILP  346 (424)
Q Consensus       298 IliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viP  346 (424)
                      +++-|. .+..+.+.+.. +  ...+++|-   |+  | .++++   ..+++|+.+..
T Consensus        69 ~V~i~t-p~~~h~~~~~~al~~gk~vl~EK---P~~~~~~~~~~l~~~a~~~~~~~~v  122 (354)
T 3db2_A           69 MVIITV-PNDKHAEVIEQCARSGKHIYVEK---PISVSLDHAQRIDQVIKETGVKFLC  122 (354)
T ss_dssp             EEEECS-CTTSHHHHHHHHHHTTCEEEEES---SSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEeC-ChHHHHHHHHHHHHcCCEEEEcc---CCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            988774 33334333332 1  44588885   42  3 34444   34567776543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.53  E-value=2.1  Score=43.81  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=28.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.++.|+|.|.||..+|..|.+.|.+|+ +.|.+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~-~~D~~   43 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVL-GVDIN   43 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            356789999999999999999999999998 45654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.48  E-value=0.049  Score=46.99  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -..+.+++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~-vid~   50 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVV-VVDK   50 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence            455788999999999999999999999999988 4454

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.45  E-value=0.07  Score=52.06  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      +-.||+|+|+|++|...++.|.+ .+.++++|+|.+          .+...+..++.+....|     -+.++++. .++
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~   68 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRR----------LENAQKMAKELAIPVAY-----GSYEELCKDETI   68 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSS----------SHHHHHHHHHTTCCCCB-----SSHHHHHHCTTC
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHHHcCCCcee-----CCHHHHhcCCCC
Confidence            44689999999999999999987 578999999974          34444444443211112     12355664 478


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCceEeccc
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKKGVVILPDI  348 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viPD~  348 (424)
                      |+++-|.- +..+.+.+.. +  +..+++|-   |+  | .++++   ..+++|+.+...+
T Consensus        69 D~V~i~tp-~~~h~~~~~~al~~gk~vl~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~~  125 (330)
T 3e9m_A           69 DIIYIPTY-NQGHYSAAKLALSQGKPVLLEK---PFTLNAAEAEELFAIAQEQGVFLMEAQ  125 (330)
T ss_dssp             SEEEECCC-GGGHHHHHHHHHHTTCCEEECS---SCCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred             CEEEEcCC-CHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            99887743 3333333332 1  34578875   42  3 34443   3457777665433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=94.38  E-value=0.06  Score=51.50  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      ..+||++.|+|++|+.+++.  . +..++++.|      +.-|              .+    +.... +-++++. ++|
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~------~k~g--------------el----gv~a~~d~d~lla-~pD   62 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD------RISK--------------DI----PGVVRLDEFQVPS-DVS   62 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC------SSCC--------------CC----SSSEECSSCCCCT-TCC
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe------cccc--------------cc----CceeeCCHHHHhh-CCC
Confidence            45899999999999999998  3 999999987      2222              11    12222 3577886 999


Q ss_pred             eeeeccccCcccccccccccc
Q 014463          298 VLVPCALGGVLNKENAADVKA  318 (424)
Q Consensus       298 IliPaA~~~~It~~na~~i~a  318 (424)
                      +++.||....+.+.-.+-+++
T Consensus        63 ~VVe~A~~~av~e~~~~iL~a   83 (253)
T 1j5p_A           63 TVVECASPEAVKEYSLQILKN   83 (253)
T ss_dssp             EEEECSCHHHHHHHHHHHTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHC
Confidence            999999766555433333433

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.37  E-value=0.12  Score=49.13  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      +||+|.|. |.+|+.+++.+.+. +..++++.|...        |                        .++++..++|+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~--------d------------------------l~~~~~~~~Dv   48 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD--------P------------------------LSLLTDGNTEV   48 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC--------C------------------------THHHHHTTCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC--------C------------------------HHHHhccCCcE
Confidence            47999996 99999999998765 899999998630        1                        12333447899


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHH
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEIL  337 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL  337 (424)
                      +|.++....+ .+|+..   -+..+|++-. + ++++-.+.|
T Consensus        49 vIDfT~p~a~-~~~~~~a~~~g~~~VigTT-G-~~~e~~~~l   87 (245)
T 1p9l_A           49 VIDFTHPDVV-MGNLEFLIDNGIHAVVGTT-G-FTAERFQQV   87 (245)
T ss_dssp             EEECSCTTTH-HHHHHHHHHTTCEEEECCC-C-CCHHHHHHH
T ss_pred             EEEccChHHH-HHHHHHHHHcCCCEEEcCC-C-CCHHHHHHH
Confidence            9988865544 455433   3667888655 3 666543333

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.34  E-value=0.13  Score=51.88  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=63.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc---------CCCCeeecC--C
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND---------FQGGNAMDL--N  289 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~---------~~~~~~i~~--~  289 (424)
                      ++|+|+|.|.||..+|..|.+ |..|+ +.|.+          .+.+..+.+..-.+.+         .++.-..+.  .
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~-~~d~~----------~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVT-IVDIL----------PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEE-EECSC----------HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEE-EEECC----------HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            479999999999999999998 99987 45653          2222222221111100         001111111  1


Q ss_pred             cccccccceeeeccccCc----------cccccccc---c--cceEEEecCCCCCC-HHHHHHHHhCCceEecccc
Q 014463          290 DLLVHECDVLVPCALGGV----------LNKENAAD---V--KAKFIIEAANHPTD-PEADEILSKKGVVILPDIY  349 (424)
Q Consensus       290 ~ll~~~~DIliPaA~~~~----------It~~na~~---i--~akiIvEgAN~p~t-~eA~~iL~~rGI~viPD~l  349 (424)
                      +.+ .+||++|-|.-...          ..++-++.   +  .+-+|.+..|.|-| .+..+.+.++.|...|.++
T Consensus        69 ~~~-~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~  143 (402)
T 1dlj_A           69 AAY-KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFL  143 (402)
T ss_dssp             HHH-HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCC
T ss_pred             HHh-cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCccc
Confidence            222 37899998854331          01111111   2  23345568998854 4445566666788888765

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.33  E-value=0.39  Score=47.52  Aligned_cols=32  Identities=25%  Similarity=0.499  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.+ .+..||+|.|.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~   36 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP   36 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCC
Confidence            589999999999999999865 57999999984

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=94.33  E-value=0.1  Score=48.59  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=62.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC----EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      ++|+|+|.|++|+.+++.|.+.|.    +|+ +.|.+          .+.+.+..++.+       .... ++.+.+ .+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~-~~~r~----------~~~~~~~~~~~g-------~~~~~~~~e~~-~~   63 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQII-CSDLN----------TANLKNASEKYG-------LTTTTDNNEVA-KN   63 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEE-EECSC----------HHHHHHHHHHHC-------CEECSCHHHHH-HH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEE-EEeCC----------HHHHHHHHHHhC-------CEEeCChHHHH-Hh
Confidence            589999999999999999999997    766 66663          345544443322       1211 122333 37


Q ss_pred             cceeeeccccCccccccccc----cc-ceEEEecCCCCCCHHHHHHHHh--CCceEeccccc
Q 014463          296 CDVLVPCALGGVLNKENAAD----VK-AKFIIEAANHPTDPEADEILSK--KGVVILPDIYA  350 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~la  350 (424)
                      ||++|-|.-.. ..++.++.    ++ -++|+--+++-......+.+..  +-+.+.|+.-+
T Consensus        64 aDvVilav~~~-~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~  124 (247)
T 3gt0_A           64 ADILILSIKPD-LYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPA  124 (247)
T ss_dssp             CSEEEECSCTT-THHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGG
T ss_pred             CCEEEEEeCHH-HHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHH
Confidence            99999987333 22232222    32 3477755554333334444532  33456676533

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.32  E-value=0.06  Score=49.49  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|++|+.+++.|.+.|..|+.+.|.+.          +.+.+..++.+.      ....++.+. -.++|++|
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~----------~~~~~l~~~~g~------~~~~~~~~~-~~~aDvVi   86 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP----------ASLSSVTDRFGA------SVKAVELKD-ALQADVVI   86 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG----------GGGHHHHHHHTT------TEEECCHHH-HTTSSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH----------HHHHHHHHHhCC------CcccChHHH-HhcCCEEE
Confidence            6899999999999999999999999886577642          233333332221      011122222 24789999


Q ss_pred             eccccCccccccccc---ccceEEEecCCCC
Q 014463          301 PCALGGVLNKENAAD---VKAKFIIEAANHP  328 (424)
Q Consensus       301 PaA~~~~It~~na~~---i~akiIvEgAN~p  328 (424)
                      -|.-... ..+.+..   ++-++|+..+|+.
T Consensus        87 lavp~~~-~~~v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           87 LAVPYDS-IADIVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             EESCGGG-HHHHHTTCSCCTTCEEEECCCCB
T ss_pred             EeCChHH-HHHHHHHhhccCCCEEEEcCCCC
Confidence            8864322 2222222   3457999999875

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=94.30  E-value=0.14  Score=50.10  Aligned_cols=113  Identities=18%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ...++++|+|.|..|+..++.|.+ .+.+.|.|.|.+          .++..++.++.+.. .+ ....-+.++.+  ++
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~----------~~~a~~la~~~~~~-~~-~~~~~~~~e~v--~a  188 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR----------EKAAKKFVSYCEDR-GI-SASVQPAEEAS--RC  188 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS----------HHHHHHHHHHHHHT-TC-CEEECCHHHHT--SS
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC----------HHHHHHHHHHHHhc-Cc-eEEECCHHHHh--CC
Confidence            467899999999999999998876 566767788763          44544444321100 01 11111223455  79


Q ss_pred             ceeeeccccC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          297 DVLVPCALGG--VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                      ||++-|.-..  .++.+..+ -.+-+++.|+..|-..|.+..+.+++..++
T Consensus       189 DvVi~aTp~~~pv~~~~~l~-~G~~V~~ig~~~p~~~el~~~~~~~a~v~v  238 (322)
T 1omo_A          189 DVLVTTTPSRKPVVKAEWVE-EGTHINAIGADGPGKQELDVEILKKAKIVV  238 (322)
T ss_dssp             SEEEECCCCSSCCBCGGGCC-TTCEEEECSCCSTTCCCBCHHHHHTEEEEE
T ss_pred             CEEEEeeCCCCceecHHHcC-CCeEEEECCCCCCCccccCHHHHhcCeEEE
Confidence            9999886532  23322222 256788899998876666555556665444

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=94.27  E-value=0.019  Score=56.93  Aligned_cols=107  Identities=23%  Similarity=0.353  Sum_probs=69.8

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|+++.|.|+|++|+.+|+.+...|++|++ .|...       -  +..   .+.        +....+-+++| .
T Consensus       136 ~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~-~d~~~-------~--~~~---~~~--------~~~~~~l~ell-~  193 (334)
T 3kb6_A          136 ARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLC-YDVVK-------R--EDL---KEK--------GCVYTSLDELL-K  193 (334)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSC-------C--HHH---HHT--------TCEECCHHHHH-H
T ss_pred             cceecCcEEEEECcchHHHHHHHhhcccCceeee-cCCcc-------c--hhh---hhc--------CceecCHHHHH-h
Confidence            3468899999999999999999999999999984 34321       0  111   111        12233445665 4


Q ss_pred             ccceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463          295 ECDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~  343 (424)
                      .|||++-+.     ..+.|+.+....++ --+++--|=+++ ..+|- +.|++.-|.
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~  250 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFS  250 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEE
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCce
Confidence            688888765     23456666666664 357788888884 54443 566665553

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=94.23  E-value=0.037  Score=54.41  Aligned_cols=107  Identities=18%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HE  295 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~  295 (424)
                      +-.||+|+|+|++|+..++.|.+.  +.++++|+|.+          .+.+.+..++.+ +..|     -+.+++++ .+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~~~~~~-~~~~-----~~~~~ll~~~~   75 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDID----------PAALKAAVERTG-ARGH-----ASLTDMLAQTD   75 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHHC-CEEE-----SCHHHHHHHCC
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC----------HHHHHHHHHHcC-Ccee-----CCHHHHhcCCC
Confidence            346899999999999999988876  89999999974          455555554433 2211     13356665 57


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      +|+++-|.- +..+.+.+..   -+..+++|=   |+  | .++++   ..+++|+.+.
T Consensus        76 ~D~V~i~tp-~~~h~~~~~~al~~gk~v~~EK---P~a~~~~~~~~l~~~a~~~g~~~~  130 (354)
T 3q2i_A           76 ADIVILTTP-SGLHPTQSIECSEAGFHVMTEK---PMATRWEDGLEMVKAADKAKKHLF  130 (354)
T ss_dssp             CSEEEECSC-GGGHHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEECCC-cHHHHHHHHHHHHCCCCEEEeC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence            999887743 3333333322   144677774   42  3 34443   3456676554

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=94.19  E-value=0.049  Score=53.75  Aligned_cols=109  Identities=18%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-ccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-HEC  296 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~~~  296 (424)
                      -.+|+|+|+|++|+..++.|.+. +.++++|+|.+          .+...+..++.+- .  +..... +.++++. .++
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~----------~~~~~~~a~~~~~-~--~~~~~~~~~~~ll~~~~~   72 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRS----------LEKAKAFATANNY-P--ESTKIHGSYESLLEDPEI   72 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTTC-C--TTCEEESSHHHHHHCTTC
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCC-C--CCCeeeCCHHHHhcCCCC
Confidence            36899999999999999888774 78999999974          4455555544331 0  012222 2356665 479


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      |+++-|. .+..+.+.+.. +  +..+++|=   |+  | .+++++   .+++|+.+.
T Consensus        73 D~V~i~t-p~~~h~~~~~~al~aGk~V~~EK---P~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           73 DALYVPL-PTSLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             CEEEECC-CGGGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             CEEEEcC-ChHHHHHHHHHHHHCCCeEEEec---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            9999885 44444444443 2  34588874   43  3 345443   457888665

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.15  E-value=0.1  Score=49.50  Aligned_cols=165  Identities=19%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|+|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+. +       .... +.++++ .++|++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-------~~~~~~~~~~~-~~~Dvv   60 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLI-IYDVF----------PDACKEFQDA-G-------EQVVSSPADVA-EKADRI   60 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHTT-T-------CEECSSHHHHH-HHCSEE
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEE
Confidence            479999999999999999999999876 66653          2333333322 1       1111 223333 379999


Q ss_pred             eeccccCccccccc-------ccc-cceEEEecCCCCCCHHH---HHHHHhCCceEeccccccccC----------cch-
Q 014463          300 VPCALGGVLNKENA-------ADV-KAKFIIEAANHPTDPEA---DEILSKKGVVILPDIYANSGG----------VTV-  357 (424)
Q Consensus       300 iPaA~~~~It~~na-------~~i-~akiIvEgAN~p~t~eA---~~iL~~rGI~viPD~laNaGG----------Vi~-  357 (424)
                      |-|.-.....++-+       +.+ .-++|+. .++-.....   .+.+.++|+.+ |+.-.. +|          +.+ 
T Consensus        61 i~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g~~~-~~~p~~-~g~~~a~~~~~~~~~~  137 (296)
T 2gf2_A           61 ITMLPTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMGAVF-MDAPVS-GGVGAARSGNLTFMVG  137 (296)
T ss_dssp             EECCSSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE-EECCEE-SHHHHHHHTCEEEEEE
T ss_pred             EEeCCCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE-EEcCCC-CChhHHhcCcEEEEeC
Confidence            98863322111111       122 2358888 544322222   24566777654 443222 22          111 


Q ss_pred             ---hhHHHhhhcc---cc-CC-----CHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014463          358 ---SYFEWVQNIQ---GF-MW-----EEEKV----NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFT  408 (424)
Q Consensus       358 ---s~~E~~qn~~---~~-~w-----~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~  408 (424)
                         ..++.++.+-   +. .|     ..-..    ++.+...+...+.|.+..+++.|+++.++..+
T Consensus       138 ~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~  204 (296)
T 2gf2_A          138 GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKI  204 (296)
T ss_dssp             SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence               1233333211   00 01     11111    22223333456788888889999987655444

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.05  E-value=0.043  Score=52.87  Aligned_cols=106  Identities=18%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE  295 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~  295 (424)
                      +.+||+|.|+ |.+|+.+++.+. ..+.++++++|.+..-.  .|-|+.++.       .+..+ +.... +.++++. +
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~--~g~d~~~~~-------g~~~~-~v~~~~dl~~~l~-~   72 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGELA-------GAGKT-GVTVQSSLDAVKD-D   72 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTCSS-------SSSCC-SCCEESCSTTTTT-S
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhh--hhhhHHHHc-------CCCcC-CceecCCHHHHhc-C
Confidence            4479999998 999999999776 56899999999753210  133322110       01110 11111 2245664 8


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHH
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILS  338 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~  338 (424)
                      +|++|-++.+.. +.+|+..   -+..+|++-.  .+|++-.+.|.
T Consensus        73 ~DvVIDft~p~~-~~~~~~~a~~~G~~vVigTt--G~~~e~~~~L~  115 (273)
T 1dih_A           73 FDVFIDFTRPEG-TLNHLAFCRQHGKGMVIGTT--GFDEAGKQAIR  115 (273)
T ss_dssp             CSEEEECSCHHH-HHHHHHHHHHTTCEEEECCC--CCCHHHHHHHH
T ss_pred             CCEEEEcCChHH-HHHHHHHHHhCCCCEEEECC--CCCHHHHHHHH
Confidence            999998875442 2344432   3557888766  35655444444

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=94.02  E-value=0.22  Score=49.60  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+++.|.++ ...||+|.|.
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~   35 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDL   35 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999998776 6899999985

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=93.99  E-value=0.057  Score=53.51  Aligned_cols=109  Identities=10%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          219 SNMKFAIQGFGNVGS-WAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~-~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      +-.||+|+|+|..+. ..+..+...++++++|+|.+          .+...+..++.+...-|     -+.+++++ .++
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~~v   89 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKD----------DALAAEFSAVYADARRI-----ATAEEILEDENI   89 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSC----------HHHHHHHHHHSSSCCEE-----SCHHHHHTCTTC
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCC
Confidence            447999999999985 45667777899999999974          55565555554322212     23356775 469


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCceEec
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKKGVVILP  346 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~i---L~~rGI~viP  346 (424)
                      |+++-|. .+..+.+.+..   -+..++||=   |+  | .+++++   .+++|+.+.-
T Consensus        90 D~V~I~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~l~v  144 (361)
T 3u3x_A           90 GLIVSAA-VSSERAELAIRAMQHGKDVLVDK---PGMTSFDQLAKLRRVQAETGRIFSI  144 (361)
T ss_dssp             CEEEECC-CHHHHHHHHHHHHHTTCEEEEES---CSCSSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CEEEEeC-ChHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            9998663 33344433332   144688885   43  2 455543   4567776543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=93.96  E-value=0.17  Score=49.77  Aligned_cols=110  Identities=15%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             CCCCeEEEEecChHHH-HHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-c
Q 014463          218 ISNMKFAIQGFGNVGS-WAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-H  294 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~-~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~  294 (424)
                      ++-.||+|+|+|++|+ ..++.|.+. +.+|++|+|.+          .+...+..++.+ +..     .-+.+++++ .
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~-----~~~~~~ll~~~   88 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR----------WDRAKRFTERFG-GEP-----VEGYPALLERD   88 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS----------HHHHHHHHHHHC-SEE-----EESHHHHHTCT
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC----------HHHHHHHHHHcC-CCC-----cCCHHHHhcCC
Confidence            3457999999999998 678888776 89999999974          345554444322 111     123356774 4


Q ss_pred             ccceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEecc
Q 014463          295 ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILPD  347 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viPD  347 (424)
                      ++|+++-|. .+..+.+.+..   -+..++||=   |+  | .++++   ..+++|+.+...
T Consensus        89 ~~D~V~i~t-p~~~h~~~~~~al~aGk~Vl~EK---P~a~~~~ea~~l~~~a~~~g~~~~v~  146 (350)
T 3rc1_A           89 DVDAVYVPL-PAVLHAEWIDRALRAGKHVLAEK---PLTTDRPQAERLFAVARERGLLLMEN  146 (350)
T ss_dssp             TCSEEEECC-CGGGHHHHHHHHHHTTCEEEEES---SSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECC-CcHHHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence            799998773 34444443333   144688885   43  2 45544   355778766543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.89  E-value=2.2  Score=44.21  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CC-EEEEEEcCCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GG-KVVAVSDITG  254 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-Ga-kVVaVsD~~G  254 (424)
                      ++|+|+|.|.||..+|..|.+. |. .|+ +.|.+-
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~-~~D~~~   53 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVL-GFQRNS   53 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEE-EECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEE-EEECCh
Confidence            6899999999999999999999 99 988 567653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=93.88  E-value=0.049  Score=56.05  Aligned_cols=117  Identities=14%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-C---ccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-N---DLLVH  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~---~ll~~  294 (424)
                      ++++|.|.|.|.+|+.+++.|.+.|++|+ ++|.+          .+++.+..++.+.+..+. . .+++ +   +++. 
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~-v~~R~----------~~~a~~la~~~~~~~~~~-~-Dv~d~~~l~~~l~-   67 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VACRT----------LESAKKLSAGVQHSTPIS-L-DVNDDAALDAEVA-   67 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEESS----------HHHHHHTTTTCTTEEEEE-C-CTTCHHHHHHHHT-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEE-EEECC----------HHHHHHHHHhcCCceEEE-e-ecCCHHHHHHHHc-
Confidence            56899999999999999999999999965 77763          333333322211110000 0 0111 1   2333 


Q ss_pred             ccceeeeccccCcccccccc-cc--cceEEEecCCCCCCHHHHHHHHhCCceEeccccc
Q 014463          295 ECDVLVPCALGGVLNKENAA-DV--KAKFIIEAANHPTDPEADEILSKKGVVILPDIYA  350 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~-~i--~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~la  350 (424)
                      ++|++|-|+-.. .+...+. .+  +..++.+....|.+.+..+..+++|+.+++.+-.
T Consensus        68 ~~DvVIn~a~~~-~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~  125 (450)
T 1ff9_A           68 KHDLVISLIPYT-FHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGL  125 (450)
T ss_dssp             TSSEEEECCC---CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBB
T ss_pred             CCcEEEECCccc-cchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCC
Confidence            799999998432 2221111 12  2456666433333333445667899988766544

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.88  E-value=0.039  Score=54.47  Aligned_cols=33  Identities=15%  Similarity=0.449  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      .||+|.|||.+|+..++.|.+. +.++++|+|.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~   36 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4899999999999999999764 68999999974

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=93.87  E-value=0.046  Score=52.90  Aligned_cols=109  Identities=10%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463          219 SNMKFAIQGFGNVGSW-AAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      +-.+|+|+|+|++|+. .++.|.+ .+.++++|+|.+.          +...+..++.+ +..|.     +.+++ ..++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~----------~~~~~~~~~~g-~~~~~-----~~~~l-~~~~   66 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR----------AKALPICESWR-IPYAD-----SLSSL-AASC   66 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC----------TTHHHHHHHHT-CCBCS-----SHHHH-HTTC
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCH----------HHHHHHHHHcC-CCccC-----cHHHh-hcCC
Confidence            3468999999999986 7887765 5789999999752          12223333222 11111     12334 6689


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEecCCCCCC-HHHHH---HHHhCCceEec
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTD-PEADE---ILSKKGVVILP  346 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t-~eA~~---iL~~rGI~viP  346 (424)
                      |+++-|. ++..+.+.+.. +  +..+++|-- ..+| .++++   ..+++|+.+..
T Consensus        67 D~V~i~t-p~~~h~~~~~~al~~G~~v~~eKP-~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           67 DAVFVHS-STASHFDVVSTLLNAGVHVCVDKP-LAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             SEEEECS-CTTHHHHHHHHHHHTTCEEEEESS-SCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeC-CchhHHHHHHHHHHcCCeEEEeCC-CCCCHHHHHHHHHHHHHcCCeEEE
Confidence            9999774 34444443332 2  335788741 1123 34444   34578877654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=93.85  E-value=0.053  Score=53.61  Aligned_cols=105  Identities=23%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH  294 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~  294 (424)
                      .++.|++|.|+|+|++|+.+|+.|...|++|+ +.|.+.        +. .+    ++ .  ..+     . +.++++ .
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~--------~~-~~----~~-~--~~~-----~~~l~ell-~  198 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI-TYDIFR--------NP-EL----EK-K--GYY-----VDSLDDLY-K  198 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CH-HH----HH-T--TCB-----CSCHHHHH-H
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCc--------ch-hH----Hh-h--Cee-----cCCHHHHH-h
Confidence            46889999999999999999999999999988 445432        11 11    11 1  111     2 223444 3


Q ss_pred             ccceeeeccc-----cCccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV  343 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p-~t~eA-~~iL~~rGI~  343 (424)
                      +||+++-|.-     .+.|+++....++ -.+++.-+-++ ++.++ .+.|++.+|.
T Consensus       199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce
Confidence            7999998863     2345544444443 35677777776 45444 4688888876

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=93.84  E-value=0.55  Score=46.53  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=28.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.++ +.+||+|.|.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~   36 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECC
Confidence            4899999999999999999875 7899999984

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=93.77  E-value=0.18  Score=50.22  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC--eeec-CCcccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG--NAMD-LNDLLV  293 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~--~~i~-~~~ll~  293 (424)
                      ...++++|+|.|..|+..++.|. ..+.+-|.|.|.+          .+...++.++...   +++.  ...+ .++.+ 
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~----------~~~a~~la~~~~~---~~g~~~~~~~~~~eav-  192 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD----------PLATAKLIANLKE---YSGLTIRRASSVAEAV-  192 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS----------HHHHHHHHHHHTT---CTTCEEEECSSHHHHH-
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC----------HHHHHHHHHHHHh---ccCceEEEeCCHHHHH-
Confidence            46789999999999999988764 4566666687763          4455555443211   1121  1111 12333 


Q ss_pred             cccceeeeccccC----cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          294 HECDVLVPCALGG----VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~~~----~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                      .++||++-|.-..    .+..+..+ -.+-+++.|+..|-..|.+..+.+++..|+ |..
T Consensus       193 ~~aDiVi~aTps~~~~pvl~~~~l~-~G~~V~~vgs~~p~~~El~~~~~~~a~v~v-D~~  250 (350)
T 1x7d_A          193 KGVDIITTVTADKAYATIITPDMLE-PGMHLNAVGGDCPGKTELHADVLRNARVFV-EYE  250 (350)
T ss_dssp             TTCSEEEECCCCSSEEEEECGGGCC-TTCEEEECSCCBTTBEEECHHHHHTSEEEE-SSH
T ss_pred             hcCCEEEEeccCCCCCceecHHHcC-CCCEEEECCCCCCCceeeCHHHHhcCcEEE-CCH
Confidence            3699999887543    23332222 256788899988876666666667776544 443

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=93.75  E-value=0.55  Score=46.40  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      .||+|.|||.+|+.++|+|.++ ...||+|.|..
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~   35 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCC
Confidence            4899999999999999999765 57999998853

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.74  E-value=0.38  Score=46.78  Aligned_cols=93  Identities=20%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC----Ceeec-CCccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG----GNAMD-LNDLLVH  294 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~----~~~i~-~~~ll~~  294 (424)
                      ..+|+|+|.|++|+.++..|.+.|..|. +.|.+          .+.+..+.++...+ ..|+    ....+ +++  -.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~-~~~r~----------~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~--~~   79 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVI-LWARR----------KEIVDLINVSHTSP-YVEESKITVRATNDLEE--IK   79 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHHSCBT-TBTTCCCCSEEESCGGG--CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHhCCcc-cCCCCeeeEEEeCCHHH--hc
Confidence            4689999999999999999999999876 56653          23444444433222 1121    22222 233  34


Q ss_pred             ccceeeeccccCcccccccccc--cceEEEecCCC
Q 014463          295 ECDVLVPCALGGVLNKENAADV--KAKFIIEAANH  327 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~i--~akiIvEgAN~  327 (424)
                      ++|++|-|--. ...++-+..+  .-++|+.-+|+
T Consensus        80 ~aDvVil~vk~-~~~~~v~~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           80 KEDILVIAIPV-QYIREHLLRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             TTEEEEECSCG-GGHHHHHTTCSSCCSEEEECCCC
T ss_pred             CCCEEEEECCH-HHHHHHHHHhCcCCCEEEEEeCC
Confidence            79999988543 3333333333  34688999987

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.66  E-value=0.074  Score=49.85  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++|++|.|.|.|.||...++.|.+.|++|+-|
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVv   60 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVV   60 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEE
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            5799999999999999999999999999998844

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=93.65  E-value=0.04  Score=52.32  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=63.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.| +.     +  ..+.+.   +. + +..+     -+.++++ .+||+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~-~~-----~--~~~~~~---~~-g-~~~~-----~~~~~~~-~~~D~vi   63 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLH-VTT-IG-----P--VADELL---SL-G-AVNV-----ETARQVT-EFADIIF   63 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEE-ECC-SS-----C--CCHHHH---TT-T-CBCC-----SSHHHHH-HTCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEE-EEc-CH-----H--HHHHHH---Hc-C-Cccc-----CCHHHHH-hcCCEEE
Confidence            589999999999999999999999886 555 42     1  112222   11 1 1111     1123333 3799999


Q ss_pred             eccccCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEe
Q 014463          301 PCALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVIL  345 (424)
Q Consensus       301 PaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~vi  345 (424)
                      -|.-.....++.       .+.+ .-++|+.-+|+..  +.+..+.+.++|+.++
T Consensus        64 ~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           64 IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             ECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             EECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            887433211111       2223 2468888888742  2344566778888766

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.63  E-value=0.12  Score=49.72  Aligned_cols=105  Identities=16%  Similarity=0.237  Sum_probs=62.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+.          +.+.+..+. +       .... +.++.+ .+||++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~-~~~~~~----------~~~~~~~~~-g-------~~~~~~~~~~~-~~~DvV   90 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVT-VWNRTA----------EKCDLFIQE-G-------ARLGRTPAEVV-STCDIT   90 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEE-EECSSG----------GGGHHHHHT-T-------CEECSCHHHHH-HHCSEE
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEE-EEeCCH----------HHHHHHHHc-C-------CEEcCCHHHHH-hcCCEE
Confidence            689999999999999999999999876 666532          122222221 1       1111 122333 379999


Q ss_pred             eeccccCccccccc-------ccc-cceEEEecCCCCC--CHHHHHHHHhCCceEe
Q 014463          300 VPCALGGVLNKENA-------ADV-KAKFIIEAANHPT--DPEADEILSKKGVVIL  345 (424)
Q Consensus       300 iPaA~~~~It~~na-------~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~vi  345 (424)
                      |-|.-.....++.+       +.+ .-++|+..+|...  ..+..+.+.++|+.++
T Consensus        91 i~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v  146 (316)
T 2uyy_A           91 FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL  146 (316)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            98865322222211       222 3367888888542  2233456667888766

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=93.62  E-value=0.12  Score=50.84  Aligned_cols=103  Identities=16%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc-c
Q 014463          220 NMKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH-E  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~-~  295 (424)
                      -.||+|+|+|.+|+. .+..|.+. +++|++|+|.+          .+...   +      .+++.... +.+++++. +
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~----------~~~~~---~------~~~~~~~~~~~~~ll~~~~   67 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSD----------ASKVH---A------DWPAIPVVSDPQMLFNDPS   67 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC----------HHHHH---T------TCSSCCEESCHHHHHHCSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCC----------HHHHH---h------hCCCCceECCHHHHhcCCC
Confidence            368999999999986 67777654 79999999974          23222   1      23333333 23567754 6


Q ss_pred             cceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          296 CDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      +|+++-|. .+..+.+-+.. +  +..++||=   |+  | .+++++   .+++|+.+.
T Consensus        68 vD~V~i~t-p~~~H~~~~~~al~aGkhV~~EK---Pla~~~~e~~~l~~~a~~~g~~~~  122 (352)
T 3kux_A           68 IDLIVIPT-PNDTHFPLAQSALAAGKHVVVDK---PFTVTLSQANALKEHADDAGLLLS  122 (352)
T ss_dssp             CCEEEECS-CTTTHHHHHHHHHHTTCEEEECS---SCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEeC-ChHHHHHHHHHHHHCCCcEEEEC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            99998875 44444443332 2  34578874   42  3 345443   456777654

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=93.56  E-value=0.023  Score=55.07  Aligned_cols=107  Identities=15%  Similarity=0.177  Sum_probs=63.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~D  297 (424)
                      -.+|+|+|+|++|+..++.|.+. +.++++|+|.+          .+.+.+..++   +..     .-+.+++++ .++|
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~----------~~~~~~~~~~---~~~-----~~~~~~~l~~~~~D   71 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN----------PDNLALVPPG---CVI-----ESDWRSVVSAPEVE   71 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESC----------HHHHTTCCTT---CEE-----ESSTHHHHTCTTCC
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHhh---Ccc-----cCCHHHHhhCCCCC
Confidence            36899999999999999988875 78999999974          2222211111   111     123456774 5899


Q ss_pred             eeeeccccCccccccccc-c--cceEEEecCCCCCCH-HHHH---HHHhCCceEec
Q 014463          298 VLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDP-EADE---ILSKKGVVILP  346 (424)
Q Consensus       298 IliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~-eA~~---iL~~rGI~viP  346 (424)
                      +++-|.- +..+.+.+.. +  +..+++|-- ..+|. ++++   ..+++|+.+..
T Consensus        72 ~V~i~tp-~~~h~~~~~~al~~Gk~v~~eKP-~~~~~~~~~~l~~~a~~~g~~~~~  125 (315)
T 3c1a_A           72 AVIIATP-PATHAEITLAAIASGKAVLVEKP-LTLDLAEAEAVAAAAKATGVMVWV  125 (315)
T ss_dssp             EEEEESC-GGGHHHHHHHHHHTTCEEEEESS-SCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEeCC-hHHHHHHHHHHHHCCCcEEEcCC-CcCCHHHHHHHHHHHHHcCCEEEE
Confidence            9998843 3333333333 2  335788741 11233 4443   34566766543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.53  E-value=0.86  Score=43.57  Aligned_cols=127  Identities=13%  Similarity=0.102  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      --+.|...+++    ..|.+ .++++.|.|.|.+|+.++..|.+.|++-|.|.+.+          .++..++.++-+. 
T Consensus       102 TD~~G~~~~l~----~~~~~-~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt----------~~ka~~la~~~~~-  165 (271)
T 1npy_A          102 TDYIAIVKLIE----KYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN----------VKTGQYLAALYGY-  165 (271)
T ss_dssp             HHHHHHHHHHH----HTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC----------HHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHH----HhCCC-CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHcCC-
Confidence            34677766654    34554 67899999999999999999999998544488774          3444444433221 


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCccc---ccc--c--ccc-cceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLN---KEN--A--ADV-KAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It---~~n--a--~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                            . +.. ++-..++||+|-|.-.+...   .+.  .  ..+ ..++|++-.-+|....--+.-+++|+.+++..
T Consensus       166 ------~-~~~-~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~~i~Gl  236 (271)
T 1npy_A          166 ------A-YIN-SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGA  236 (271)
T ss_dssp             ------E-EES-CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECHH
T ss_pred             ------c-cch-hhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCCCEEECCH
Confidence                  1 111 11124799999776433211   111  1  123 34689999988842244556778998865443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=93.53  E-value=0.12  Score=50.04  Aligned_cols=105  Identities=15%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             CeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      .||+|+|+|++|+ ..++.|.+ .+.+++ |+|.+          .+.+.+..++.+ +..    ...+..+.+..++|+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~----------~~~~~~~a~~~g-~~~----~~~~~~~~l~~~~D~   66 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRN----------PKVLGTLATRYR-VSA----TCTDYRDVLQYGVDA   66 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSC----------HHHHHHHHHHTT-CCC----CCSSTTGGGGGCCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHHHcC-CCc----cccCHHHHhhcCCCE
Confidence            5899999999998 48887765 478999 99974          455555555433 111    012334445668999


Q ss_pred             eeeccccCccccccccc-cc--ceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          299 LVPCALGGVLNKENAAD-VK--AKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       299 liPaA~~~~It~~na~~-i~--akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      ++-|.- +..+.+.+.. ++  ..+++|-   |+  | .++++   ..+++|+.+.
T Consensus        67 V~i~tp-~~~h~~~~~~al~~Gk~V~~EK---P~~~~~~~~~~l~~~a~~~g~~~~  118 (323)
T 1xea_A           67 VMIHAA-TDVHSTLAAFFLHLGIPTFVDK---PLAASAQECENLYELAEKHHQPLY  118 (323)
T ss_dssp             EEECSC-GGGHHHHHHHHHHTTCCEEEES---CSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEECC-chhHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHhcCCeEE
Confidence            998854 3334343322 22  3478874   43  3 34443   3456777654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.50  E-value=0.12  Score=48.12  Aligned_cols=105  Identities=18%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLV  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~  293 (424)
                      +.++|+|+|.|++|+.+++.|.+.|    ..|+ +.|.+..-   .                     +....+ +.+.+ 
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~~~---~---------------------g~~~~~~~~~~~-   56 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLF-YYGPSKKN---T---------------------TLNYMSSNEELA-   56 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEE-EECSSCCS---S---------------------SSEECSCHHHHH-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEE-EEeCCccc---C---------------------ceEEeCCHHHHH-
Confidence            3568999999999999999999888    5665 66764211   0                     111111 12222 


Q ss_pred             cccceeeeccccCccccccc----ccccceEEEecCCCCCCHHHHHHHHh--CCceEeccccc
Q 014463          294 HECDVLVPCALGGVLNKENA----ADVKAKFIIEAANHPTDPEADEILSK--KGVVILPDIYA  350 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na----~~i~akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~la  350 (424)
                      .+||++|-|.-...+ ++.+    +.++-++|+--.|+-......+.+.+  +.+.++|....
T Consensus        57 ~~~D~vi~~v~~~~~-~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~  118 (262)
T 2rcy_A           57 RHCDIIVCAVKPDIA-GSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPC  118 (262)
T ss_dssp             HHCSEEEECSCTTTH-HHHHHHSGGGCTTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGG
T ss_pred             hcCCEEEEEeCHHHH-HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHH
Confidence            379999998764432 2222    22334566666665333334445543  23567777643

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.49  E-value=0.063  Score=48.95  Aligned_cols=105  Identities=21%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~  296 (424)
                      ++|+|.|+|.+|+.+++.|.+.|..|+ +.|.          |.+.+.++.++.+.-.-+.+   .+..+.+    -.++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~-vid~----------~~~~~~~l~~~~~~~~i~gd---~~~~~~l~~a~i~~a   66 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVV-IINK----------DRELCEEFAKKLKATIIHGD---GSHKEILRDAEVSKN   66 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEE-EEES----------CHHHHHHHHHHSSSEEEESC---TTSHHHHHHHTCCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------CHHHHHHHHHHcCCeEEEcC---CCCHHHHHhcCcccC
Confidence            479999999999999999999999998 4554          34445444433221000000   0112222    2378


Q ss_pred             ceeeeccccCccc---cccccc-c-cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          297 DVLVPCALGGVLN---KENAAD-V-KAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       297 DIliPaA~~~~It---~~na~~-i-~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      |++|-|.-....|   ...+++ . ..++|+- +|.   ++-.+.|++-|+-
T Consensus        67 d~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~-~~~---~~~~~~l~~~G~d  114 (218)
T 3l4b_C           67 DVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL-VND---PGNMEIFKKMGIT  114 (218)
T ss_dssp             CEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC-CCS---GGGHHHHHHHTCE
T ss_pred             CEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE-EeC---cchHHHHHHCCCC
Confidence            9998775443332   223333 2 3356654 333   3445677887873

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.47  E-value=0.13  Score=46.85  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +..+..++|+|+|.|++|+.+++.|.+.|.+|+ +.|.
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~-~~~~   50 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVT-YYGS   50 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEE-EECT
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence            345788999999999999999999999999987 5565

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.46  E-value=0.16  Score=48.10  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC-----CeeecCCcccc--
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG-----GNAMDLNDLLV--  293 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~-----~~~i~~~~ll~--  293 (424)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.+          .+.+.+..+++-.+...++     ....+++++..  
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~r~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVT-LIDQW----------PAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEE-EEECC----------HHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccC
Confidence            589999999999999999999999887 55653          2333333333211111110     01122334433  


Q ss_pred             cccceeeeccccCccccccc----cccc-ceEEEecCCCCCC-HHHHHHHHhC
Q 014463          294 HECDVLVPCALGGVLNKENA----ADVK-AKFIIEAANHPTD-PEADEILSKK  340 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~t-~eA~~iL~~r  340 (424)
                      .+||++|-|.-...+ .+-+    +.++ -++|+.-.|+..+ ....+.|.+.
T Consensus        73 ~~~d~vi~~v~~~~~-~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~  124 (316)
T 2ew2_A           73 EQVDLIIALTKAQQL-DAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKE  124 (316)
T ss_dssp             CCCSEEEECSCHHHH-HHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGG
T ss_pred             CCCCEEEEEeccccH-HHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCc
Confidence            289999988654432 2222    2232 3578888887644 3333445444

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=93.44  E-value=0.095  Score=51.18  Aligned_cols=67  Identities=12%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             CeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccc
Q 014463          221 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~D  297 (424)
                      .||+|+|+|.+|+ +.+..|.+ .+++|+||+|.+          .+...+..++.+--..|     -+-+++++ .++|
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~----------~~~a~~~a~~~g~~~~y-----~d~~ell~~~~iD   88 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRD----------LTRAREMADRFSVPHAF-----GSYEEMLASDVID   88 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSS----------HHHHHHHHHHHTCSEEE-----SSHHHHHHCSSCS
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCC----------HHHHHHHHHHcCCCeee-----CCHHHHhcCCCCC
Confidence            5999999999997 45677766 479999999974          45555555543311111     12245553 3567


Q ss_pred             eeeec
Q 014463          298 VLVPC  302 (424)
Q Consensus       298 IliPa  302 (424)
                      +++=|
T Consensus        89 aV~I~   93 (350)
T 4had_A           89 AVYIP   93 (350)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76665

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=93.43  E-value=1.6  Score=43.23  Aligned_cols=32  Identities=31%  Similarity=0.551  Sum_probs=28.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.+.+. ...||||-|.
T Consensus         2 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~   34 (332)
T 3pym_A            2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDP   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHSTTCEEEEEECT
T ss_pred             eEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCC
Confidence            4899999999999999988775 5899999875

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=93.39  E-value=0.13  Score=50.23  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=55.5

Q ss_pred             CeEEEEecChHHHHHHHHHH-H-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFH-E-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-HEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~~~  296 (424)
                      .||+|+|+|++|...++.|. + .+.++++|+|.+          .+.+.+..++.+-     ..... +.+++++ .++
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~----------~~~~~~~~~~~g~-----~~~~~~~~~~ll~~~~~   67 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN----------QEAAQKVVEQYQL-----NATVYPNDDSLLADENV   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSS----------HHHHHHHHHHTTC-----CCEEESSHHHHHHCTTC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCC-----CCeeeCCHHHHhcCCCC
Confidence            58999999999999999887 4 589999999973          4555555554331     11222 2356665 368


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEec
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEA  324 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEg  324 (424)
                      |+++-|. .+..+.+.+.. +  +..++||=
T Consensus        68 D~V~i~t-p~~~h~~~~~~al~~Gk~vl~EK   97 (344)
T 3mz0_A           68 DAVLVTS-WGPAHESSVLKAIKAQKYVFCEK   97 (344)
T ss_dssp             CEEEECS-CGGGHHHHHHHHHHTTCEEEECS
T ss_pred             CEEEECC-CchhHHHHHHHHHHCCCcEEEcC
Confidence            8888775 33333333332 1  33566664

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=93.35  E-value=0.13  Score=52.50  Aligned_cols=108  Identities=12%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc----ccCCCCeeecCCccc
Q 014463          219 SNMKFAIQGFGNVGS-WAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL----NDFQGGNAMDLNDLL  292 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~-~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v----~~~~~~~~i~~~~ll  292 (424)
                      +-.+|+|+|+|++|+ ..++.|.+. +.++++|+|.+          .+...+..++.+.-    ..|     -+.++++
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~----------~~~~~~~a~~~g~~~~~~~~~-----~~~~~ll  146 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN----------AEKAKIVAAEYGVDPRKIYDY-----SNFDKIA  146 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC----------HHHHHHHHHHTTCCGGGEECS-----SSGGGGG
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCC----------HHHHHHHHHHhCCCccccccc-----CCHHHHh
Confidence            446999999999997 778877664 68999999974          34454444443311    012     1335676


Q ss_pred             c-cccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          293 V-HECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       293 ~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      + .++|+++-|.- +..+.+.+.. +  +..+++|=   |+  | .+++++   .+++|+.+.
T Consensus       147 ~~~~vD~V~iatp-~~~h~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          147 KDPKIDAVYIILP-NSLHAEFAIRAFKAGKHVMCEK---PMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             GCTTCCEEEECSC-GGGHHHHHHHHHHTTCEEEECS---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCEEEEcCC-chhHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHhCCeEE
Confidence            5 47999998843 3333333332 2  33588873   43  3 344443   456777654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=93.30  E-value=0.11  Score=51.63  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|.|||.+|+.+++.|.++ +..||+|+|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~   35 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT   35 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999876 6999999996

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=93.29  E-value=0.85  Score=45.24  Aligned_cols=32  Identities=34%  Similarity=0.589  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.+.+.   ...||||-|.
T Consensus         3 ~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~   37 (335)
T 3doc_A            3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            4899999999999999988776   5789999875

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=93.22  E-value=0.78  Score=45.72  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      +...||+|-|||.+|+.+++.+.+. ...||+|.|.
T Consensus         9 ~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~   44 (345)
T 2b4r_O            9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDP   44 (345)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             hhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCC
Confidence            5668999999999999999998765 4799999983

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.20  E-value=0.067  Score=44.45  Aligned_cols=34  Identities=38%  Similarity=0.618  Sum_probs=28.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++|+|.|+|.+|+.+++.|.+.|.+|+ +.|.
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~-~~d~   37 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVL-AVDI   37 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCE-EEES
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            456789999999999999999999999987 4454

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=93.17  E-value=0.13  Score=50.96  Aligned_cols=104  Identities=17%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             CCeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccc-cc
Q 014463          220 NMKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLV-HE  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~-~~  295 (424)
                      -.||+|+|+|.+|+. .+..|.+. +++|++|+|.+          .+++.   +      .+++....+ .+++++ .+
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~---~------~~~~~~~~~~~~~ll~~~~   67 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRD----------EEKVK---R------DLPDVTVIASPEAAVQHPD   67 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSC----------HHHHH---H------HCTTSEEESCHHHHHTCTT
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC----------HHHHH---h------hCCCCcEECCHHHHhcCCC
Confidence            368999999999986 67777654 89999999985          23322   1      223333333 356665 57


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEec
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVILP  346 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~viP  346 (424)
                      +|+++-|. .+..+.+.+..   -+..++||=   |+  | .++++   ..+++|+.+..
T Consensus        68 ~D~V~i~t-p~~~H~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~v  123 (364)
T 3e82_A           68 VDLVVIAS-PNATHAPLARLALNAGKHVVVDK---PFTLDMQEARELIALAEEKQRLLSV  123 (364)
T ss_dssp             CSEEEECS-CGGGHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEeC-ChHHHHHHHHHHHHCCCcEEEeC---CCcCCHHHHHHHHHHHHHhCCeEEE
Confidence            89998883 44444443332   144677774   43  2 34443   35577776543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.15  E-value=0.14  Score=51.36  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++.+++|+|+|+|.+|..+++.+...|++|+ +.|.+
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-~~d~~  204 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVM-ATDVR  204 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            4789999999999999999999999999965 77865

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.13  E-value=0.31  Score=47.29  Aligned_cols=107  Identities=19%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-Cccc--CCC---C-eeec-CCccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SLND--FQG---G-NAMD-LNDLL  292 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~v~~--~~~---~-~~i~-~~~ll  292 (424)
                      ++|+|+|.|++|+.++..|.+.|..|+ +.|.+          .+.+.+..++.+ .+.+  ++.   . ...+ .++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVL-AWDID----------AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEE-EEeCC----------HHHHHHHHhcCCeEEeccccccccccceecCCHHHHH
Confidence            689999999999999999999999976 55653          233444433322 1111  100   0 1111 12222


Q ss_pred             ccccceeeeccccCccccccccc----c--cceEEEecCC-CCCCHHHHHHHHhCC
Q 014463          293 VHECDVLVPCALGGVLNKENAAD----V--KAKFIIEAAN-HPTDPEADEILSKKG  341 (424)
Q Consensus       293 ~~~~DIliPaA~~~~It~~na~~----i--~akiIvEgAN-~p~t~eA~~iL~~rG  341 (424)
                       .++|++|-|.-.... .+-++.    +  .+-+|.. .| .+-+.+..+.|.++|
T Consensus        74 -~~~D~vi~~v~~~~~-~~~~~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~~~  126 (359)
T 1bg6_A           74 -KDADVILIVVPAIHH-ASIAANIASYISEGQLIILN-PGATGGALEFRKILRENG  126 (359)
T ss_dssp             -TTCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTT
T ss_pred             -hcCCEEEEeCCchHH-HHHHHHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHhcC
Confidence             379999988755443 333322    2  2334444 44 333444446677765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.11  E-value=0.077  Score=51.74  Aligned_cols=49  Identities=27%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          205 FATEALLAEHGK-----SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       205 ~~~~~~~~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |.=+-+|+.+|.     .|+..+|.|.|.|.+|+.++++|...|..-+.|.|.+
T Consensus        16 y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           16 PRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             ----------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             chHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            443445555553     2888999999999999999999999997555577754

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=93.05  E-value=0.1  Score=51.83  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      .||+|.|+|.+|+.+++.|.++ +.++++|+|.+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~   35 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS   35 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            4899999999999999999764 68999999963

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=93.03  E-value=0.092  Score=50.62  Aligned_cols=114  Identities=25%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec--CCccccc
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD--LNDLLVH  294 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~--~~~ll~~  294 (424)
                      +-.||+|.| +|.+|+.+++.+.+ .+.++|++.|.++.-  ..|.|+.++.          +.+....+.  .++++. 
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~--~~G~d~gel~----------g~~~gv~v~~dl~~ll~-   72 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP--QLGQDAGAFL----------GKQTGVALTDDIERVCA-   72 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT--TTTSBTTTTT----------TCCCSCBCBCCHHHHHH-
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc--cccccHHHHh----------CCCCCceecCCHHHHhc-
Confidence            346899999 89999999998865 578999999986531  1355554332          111111121  134454 


Q ss_pred             ccceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHH----hCCceEeccc
Q 014463          295 ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILS----KKGVVILPDI  348 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~----~rGI~viPD~  348 (424)
                      ++||+|-++..... .+|+..   -+.++|++-  -.++++..+.|.    +.++++.|-|
T Consensus        73 ~~DVVIDfT~p~a~-~~~~~~al~~G~~vVigT--TG~s~~~~~~L~~aa~~~~vv~a~N~  130 (272)
T 4f3y_A           73 EADYLIDFTLPEGT-LVHLDAALRHDVKLVIGT--TGFSEPQKAQLRAAGEKIALVFSANM  130 (272)
T ss_dssp             HCSEEEECSCHHHH-HHHHHHHHHHTCEEEECC--CCCCHHHHHHHHHHTTTSEEEECSCC
T ss_pred             CCCEEEEcCCHHHH-HHHHHHHHHcCCCEEEEC--CCCCHHHHHHHHHHhccCCEEEECCC
Confidence            79999999754432 334433   255677633  235666444443    3345554544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.01  E-value=0.37  Score=46.98  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      +.-++|+|+|.|++|+.+|+.|.+.|.  +|+ +.|.+          .+.+.... +.|.+..    ..-+.+++.-.+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~-~~dr~----------~~~~~~a~-~~G~~~~----~~~~~~~~~~~~   94 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDIN----------PESISKAV-DLGIIDE----GTTSIAKVEDFS   94 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSC----------HHHHHHHH-HTTSCSE----EESCTTGGGGGC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEE-EEECC----------HHHHHHHH-HCCCcch----hcCCHHHHhhcc
Confidence            344799999999999999999999998  776 56653          33333332 2222211    011234413358


Q ss_pred             cceeeeccccCccccccccc----c-cceEEEecCCC
Q 014463          296 CDVLVPCALGGVLNKENAAD----V-KAKFIIEAANH  327 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~----i-~akiIvEgAN~  327 (424)
                      ||++|.|.-...+. +.+..    + .-.+|+.-+..
T Consensus        95 aDvVilavp~~~~~-~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A           95 PDFVMLSSPVRTFR-EIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             CSEEEECSCGGGHH-HHHHHHHHHSCTTCEEEECCSC
T ss_pred             CCEEEEeCCHHHHH-HHHHHHhhccCCCcEEEECCCC
Confidence            99999987555432 22222    2 22477765543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=93.00  E-value=0.099  Score=50.92  Aligned_cols=107  Identities=14%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC---CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      .||+|+|+|++|+..++.|.+..   +++++|+|.+          .+...+..++.+.-..|     -+.+++++ .++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~~v   67 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD----------LSRAKEFAQKHDIPKAY-----GSYEELAKDPNV   67 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSS----------HHHHHHHHHHHTCSCEE-----SSHHHHHHCTTC
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCCCC
Confidence            58999999999999998887643   5899999973          45555555543311111     23356765 479


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCceEec
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKKGVVILP  346 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~i---L~~rGI~viP  346 (424)
                      |+++-|. .+..+.+.+..   -+..++||=   |+  | .+++++   .+++|+.+.-
T Consensus        68 D~V~i~t-p~~~H~~~~~~al~~GkhVl~EK---P~a~~~~e~~~l~~~a~~~~~~~~v  122 (334)
T 3ohs_X           68 EVAYVGT-QHPQHKAAVMLCLAAGKAVLCEK---PMGVNAAEVREMVTEARSRGLFLME  122 (334)
T ss_dssp             CEEEECC-CGGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEECC-CcHHHHHHHHHHHhcCCEEEEEC---CCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            9999774 44445444433   144688885   53  3 345543   4577776543

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=92.97  E-value=0.12  Score=51.04  Aligned_cols=106  Identities=17%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      +..+|+|+|+|++|...++.|.+. ++++++|+|.+          .+.+. ..++. .+..|     -+.++++. .++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~----------~~~~~-~a~~~-g~~~~-----~~~~~ll~~~~~   66 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL----------AEKRE-AAAQK-GLKIY-----ESYEAVLADEKV   66 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS----------HHHHH-HHHTT-TCCBC-----SCHHHHHHCTTC
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC----------HHHHH-HHHhc-CCcee-----CCHHHHhcCCCC
Confidence            457899999999999999988765 78999999974          33332 22222 12222     12356664 478


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      |+++-|. .+..+.+.+..   -...++||=   |+  | .+++++   .+++|+.+.
T Consensus        67 D~V~i~t-p~~~h~~~~~~al~aGkhVl~EK---P~a~~~~ea~~l~~~a~~~g~~~~  120 (359)
T 3e18_A           67 DAVLIAT-PNDSHKELAISALEAGKHVVCEK---PVTMTSEDLLAIMDVAKRVNKHFM  120 (359)
T ss_dssp             CEEEECS-CGGGHHHHHHHHHHTTCEEEEES---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CEEEEcC-CcHHHHHHHHHHHHCCCCEEeeC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence            9998774 33334333332   144588884   43  2 345443   446666543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.96  E-value=0.11  Score=49.48  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      +.|...+++.    .  ++++ ++.|.|.|.+|+.++..|.+.|++-|.|++.+          .++..++.++      
T Consensus        95 ~~G~~~~l~~----~--~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~----------~~ka~~la~~------  151 (253)
T 3u62_A           95 WVGVVKSLEG----V--EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT----------IERAKALDFP------  151 (253)
T ss_dssp             HHHHHHHTTT----C--CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC----------HHHHHTCCSS------
T ss_pred             HHHHHHHHHh----c--CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHH------
Confidence            5676666543    2  4688 99999999999999999999998334477764          2333222211      


Q ss_pred             CCCCeeecCCccc--ccccceeeecc---ccC---cccccccccccceEEEecCCCCCCHHHHHHHHhCCce-Eeccc
Q 014463          280 FQGGNAMDLNDLL--VHECDVLVPCA---LGG---VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV-ILPDI  348 (424)
Q Consensus       280 ~~~~~~i~~~~ll--~~~~DIliPaA---~~~---~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~-viPD~  348 (424)
                      +. .  .+.+++-  -.++||+|-|.   +..   .|..+...  ...+|++-+-+ .|+-.. ..+++|+. ++|..
T Consensus       152 ~~-~--~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~--~~~~V~Divy~-~T~ll~-~A~~~G~~~~~~Gl  222 (253)
T 3u62_A          152 VK-I--FSLDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLK--NLSLVYDVIYF-DTPLVV-KARKLGVKHIIKGN  222 (253)
T ss_dssp             CE-E--EEGGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHT--TCSEEEECSSS-CCHHHH-HHHHHTCSEEECTH
T ss_pred             cc-c--CCHHHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhC--cCCEEEEeeCC-CcHHHH-HHHHCCCcEEECCH
Confidence            11 0  1112222  23789999553   221   12211111  34688888777 666443 34567887 76654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.88  E-value=0.19  Score=45.97  Aligned_cols=89  Identities=16%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      ..++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+.        +....+.++.+ .+||+
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~-~~~r~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~Dv   86 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVV-VGSRN----------PKRTARLFPS--------AAQVTFQEEAV-SSPEV   86 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEE-EEESS----------HHHHHHHSBT--------TSEEEEHHHHT-TSCSE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc--------CCceecHHHHH-hCCCE
Confidence            34689999999999999999999999876 55653          2333332221        12222233333 37999


Q ss_pred             eeeccccCccccccc---ccccceEEEecCCCC
Q 014463          299 LVPCALGGVLNKENA---ADVKAKFIIEAANHP  328 (424)
Q Consensus       299 liPaA~~~~It~~na---~~i~akiIvEgAN~p  328 (424)
                      +|-|.-...+ ++-.   ...+-++|+.-+|+.
T Consensus        87 Vi~av~~~~~-~~v~~l~~~~~~~~vv~~s~g~  118 (215)
T 2vns_A           87 IFVAVFREHY-SSLCSLSDQLAGKILVDVSNPT  118 (215)
T ss_dssp             EEECSCGGGS-GGGGGGHHHHTTCEEEECCCCC
T ss_pred             EEECCChHHH-HHHHHHHHhcCCCEEEEeCCCc
Confidence            9988754332 1111   112456888888875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.78  E-value=0.32  Score=46.20  Aligned_cols=87  Identities=17%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      ++|+|+|. |++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..+ .+ +.      ..+..+.+ .+||++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~~~~-~g-~~------~~~~~~~~-~~aDvV   71 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIA----------PEGRDRLQG-MG-IP------LTDGDGWI-DEADVV   71 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCS----------HHHHHHHHH-TT-CC------CCCSSGGG-GTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHh-cC-CC------cCCHHHHh-cCCCEE
Confidence            58999999 9999999999999999887 66653          333333333 22 11      11333444 379999


Q ss_pred             eeccccCccccccccc----cc-ceEEEecCCCC
Q 014463          300 VPCALGGVLNKENAAD----VK-AKFIIEAANHP  328 (424)
Q Consensus       300 iPaA~~~~It~~na~~----i~-akiIvEgAN~p  328 (424)
                      |-|.-...+ .+-++.    ++ -++|+..+++.
T Consensus        72 i~av~~~~~-~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           72 VLALPDNII-EKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             EECSCHHHH-HHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             EEcCCchHH-HHHHHHHHHhCCCCCEEEECCCCc
Confidence            988754442 222222    22 35777777664

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=92.78  E-value=1.2  Score=44.21  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.+.+. ...||||-|.
T Consensus         5 ~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~   37 (345)
T 4dib_A            5 TRVAINGFGRIGRMVFRQAIKESAFEIVAINAS   37 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC
Confidence            5899999999999999988765 5899999885

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.77  E-value=0.12  Score=44.29  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=28.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ...+|+|.|+|.+|+.+++.|.+.|..|+.| |.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vi-d~   34 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVI-SN   34 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEE-EC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEE-EC
Confidence            3568999999999999999999999999854 44

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.76  E-value=0.18  Score=51.09  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +.+++|+|+|+|.+|..+++.+...|++|+ ++|.+.
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVR-AFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence            678999999999999999999999999876 778753

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=92.76  E-value=1.4  Score=43.69  Aligned_cols=32  Identities=47%  Similarity=0.720  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.+.+. ...||||-|.
T Consensus         5 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~   37 (338)
T 3lvf_P            5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL   37 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCceEEEEecC
Confidence            4899999999999999988765 4789999883

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=92.74  E-value=0.13  Score=50.64  Aligned_cols=104  Identities=16%  Similarity=0.335  Sum_probs=63.7

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-c
Q 014463          219 SNMKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-H  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~  294 (424)
                      +-.||+|+|+|++|.. .+..|.+. +++|++|+|.+          .+++   .++      |++.... +.++++. .
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~---~~~------~~~~~~~~~~~~ll~~~   64 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSR----------TEEV---KRD------FPDAEVVHELEEITNDP   64 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSC----------HHHH---HHH------CTTSEEESSTHHHHTCT
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCC----------HHHH---Hhh------CCCCceECCHHHHhcCC
Confidence            3468999999999986 67777654 89999999985          2222   222      2233333 3356775 5


Q ss_pred             ccceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          295 ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      ++|+++-|. .+..+.+.+..   -+..++||=   |+  | .+++++   .+++|+.+.
T Consensus        65 ~vD~V~i~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  120 (358)
T 3gdo_A           65 AIELVIVTT-PSGLHYEHTMACIQAGKHVVMEK---PMTATAEEGETLKRAADEKGVLLS  120 (358)
T ss_dssp             TCCEEEECS-CTTTHHHHHHHHHHTTCEEEEES---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEcC-CcHHHHHHHHHHHHcCCeEEEec---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            799999885 34444443332   144688884   42  2 445443   446777654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=92.68  E-value=0.16  Score=50.06  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=55.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHH-H-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFH-E-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH  294 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~-~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~  294 (424)
                      ++-.||+|+|+|++|+..++.|. + .++++++|+|.+          .+.+.+..++.+-     ..... +.+++++.
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~a~~~g~-----~~~~~~~~~~ll~~   85 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV----------AGRAQAALDKYAI-----EAKDYNDYHDLIND   85 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS----------TTHHHHHHHHHTC-----CCEEESSHHHHHHC
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC----------HHHHHHHHHHhCC-----CCeeeCCHHHHhcC
Confidence            45579999999999999998887 4 589999999974          2344444444321     11222 23566653


Q ss_pred             -ccceeeeccccCccccccccc---ccceEEEec
Q 014463          295 -ECDVLVPCALGGVLNKENAAD---VKAKFIIEA  324 (424)
Q Consensus       295 -~~DIliPaA~~~~It~~na~~---i~akiIvEg  324 (424)
                       ++|+++-|. .+..+.+.+..   -...++||=
T Consensus        86 ~~~D~V~i~t-p~~~h~~~~~~al~aGk~Vl~EK  118 (357)
T 3ec7_A           86 KDVEVVIITA-SNEAHADVAVAALNANKYVFCEK  118 (357)
T ss_dssp             TTCCEEEECS-CGGGHHHHHHHHHHTTCEEEEES
T ss_pred             CCCCEEEEcC-CcHHHHHHHHHHHHCCCCEEeec
Confidence             688888764 33333333322   134577775

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=92.66  E-value=0.4  Score=41.18  Aligned_cols=115  Identities=22%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             hCCC-CCCCeEEEEec----ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC
Q 014463          214 HGKS-ISNMKFAIQGF----GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL  288 (424)
Q Consensus       214 ~g~~-l~g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~  288 (424)
                      .|.. ++-++|+|+|.    |++|..+++.|.+.|.+|..+ |       |.+   +++       ..+.-|+     +.
T Consensus         7 ~~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~v-n-------p~~---~~i-------~G~~~~~-----s~   63 (138)
T 1y81_A            7 HGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPV-N-------PNY---DEI-------EGLKCYR-----SV   63 (138)
T ss_dssp             -------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE-C-------TTC---SEE-------TTEECBS-----SG
T ss_pred             ccccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEe-C-------CCC---CeE-------CCeeecC-----CH
Confidence            3444 56689999999    999999999999999986643 3       221   000       0111221     12


Q ss_pred             CcccccccceeeeccccCccccccc---ccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcch
Q 014463          289 NDLLVHECDVLVPCALGGVLNKENA---ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTV  357 (424)
Q Consensus       289 ~~ll~~~~DIliPaA~~~~It~~na---~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~  357 (424)
                      +++.+ ++|+.+-|--. ....+-+   -..+.+.|+.-. +-.+.+..+..+++|+.++=   -|+=|++.
T Consensus        64 ~el~~-~vDlvii~vp~-~~v~~v~~~~~~~g~~~i~~~~-~~~~~~l~~~a~~~Gi~~ig---pnc~g~~~  129 (138)
T 1y81_A           64 RELPK-DVDVIVFVVPP-KVGLQVAKEAVEAGFKKLWFQP-GAESEEIRRFLEKAGVEYSF---GRCIMVET  129 (138)
T ss_dssp             GGSCT-TCCEEEECSCH-HHHHHHHHHHHHTTCCEEEECT-TSCCHHHHHHHHHHTCEEEC---SCCHHHHC
T ss_pred             HHhCC-CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcC-ccHHHHHHHHHHHCCCEEEc---CCcceEEc
Confidence            33332 56776655321 2111111   112334333322 12478888899999998752   25555544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.66  E-value=0.18  Score=51.32  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +.+.+|+|+|+|.+|..+++.+...|++|+ +.|.+.
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D~~~  223 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVS-ATDVRP  223 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSST
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence            678999999999999999999999999977 778753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.57  E-value=0.36  Score=45.32  Aligned_cols=88  Identities=16%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl  299 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+ +.|.+          .+.+.... +.+...     ... +.+++  .+||++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~-~~g~~~-----~~~~~~~~~--~~~D~v   61 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLI-GVSRQ----------QSTCEKAV-ERQLVD-----EAGQDLSLL--QTAKII   61 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHH-HTTSCS-----EEESCGGGG--TTCSEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHH-hCCCCc-----cccCCHHHh--CCCCEE
Confidence            479999999999999999999999877 45653          33343332 222110     112 22344  689999


Q ss_pred             eeccccCccccccc----cccc-ceEEEecCCCC
Q 014463          300 VPCALGGVLNKENA----ADVK-AKFIIEAANHP  328 (424)
Q Consensus       300 iPaA~~~~It~~na----~~i~-akiIvEgAN~p  328 (424)
                      |-|.-...+ .+.+    +.++ -++|+..+|..
T Consensus        62 i~av~~~~~-~~~~~~l~~~~~~~~~vv~~~~~~   94 (279)
T 2f1k_A           62 FLCTPIQLI-LPTLEKLIPHLSPTAIVTDVASVK   94 (279)
T ss_dssp             EECSCHHHH-HHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             EEECCHHHH-HHHHHHHHhhCCCCCEEEECCCCc
Confidence            998654322 2222    2232 35777776643

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=92.56  E-value=0.5  Score=40.72  Aligned_cols=100  Identities=20%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          220 NMKFAIQGF----GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       220 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      -++|+|+|.    |++|..+++.|.+.|.+|..|.        |.+   +++       ..+.-|+     +.+++- .+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn--------p~~---~~i-------~G~~~y~-----sl~~l~-~~   77 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN--------PKY---EEV-------LGRKCYP-----SVLDIP-DK   77 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC--------TTC---SEE-------TTEECBS-----SGGGCS-SC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC--------CCC---CeE-------CCeeccC-----CHHHcC-CC
Confidence            468999999    7999999999999999876552        221   000       0111221     112332 25


Q ss_pred             cceeeeccccCcccccccc---cccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          296 CDVLVPCALGGVLNKENAA---DVKAKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~---~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                      +|+.+-|--. ....+-++   ...+|.|+--. +....+..++.+++|+.++
T Consensus        78 vDlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~-g~~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           78 IEVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQY-NTYNREASKKADEAGLIIV  128 (144)
T ss_dssp             CSEEEECSCH-HHHHHHHHHHHHHTCSEEEECT-TCCCHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEeCH-HHHHHHHHHHHHcCCCEEEECC-CchHHHHHHHHHHcCCEEE
Confidence            6766655321 11111111   22344455332 2347888889999999987

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=92.54  E-value=0.24  Score=47.85  Aligned_cols=108  Identities=19%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccc-cc
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLV-HE  295 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~-~~  295 (424)
                      +..||+|+|+ |+.|+..++.|.+.|.++|+..|....     |             ..+.+   ....+ -+++.+ .+
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-----g-------------~~~~G---~~vy~sl~el~~~~~   64 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-----G-------------TTHLG---LPVFNTVREAVAATG   64 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-----T-------------CEETT---EEEESSHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-----c-------------ceeCC---eeccCCHHHHhhcCC
Confidence            3578999999 999999999998889998877665310     0             00111   11111 134442 26


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCCCH---HHHHHHHhCCceEe-ccc
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP---EADEILSKKGVVIL-PDI  348 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~---eA~~iL~~rGI~vi-PD~  348 (424)
                      +|+.+-|.-. ..+.+.+..   -+.+++++.+-+....   +..++.+++|+.++ |..
T Consensus        65 ~D~viI~tP~-~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc  123 (288)
T 2nu8_A           65 ATASVIYVPA-PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNT  123 (288)
T ss_dssp             CCEEEECCCG-GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred             CCEEEEecCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCC
Confidence            7877766332 223333322   3667766655443222   34456778899666 554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.51  E-value=0.17  Score=50.36  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|+|.|.|.+|+.+++.+...|++|+ +.|.+
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~-~~d~~  198 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGAQVT-ILDVN  198 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence            788999999999999999999999999987 56653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.48  E-value=0.18  Score=50.97  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+.+|+|+|+|.+|..+++.+...|++|+ +.|.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D~~  216 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTT-GYDVR  216 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEE-EECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            678999999999999999999999999977 77775

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.41  E-value=2  Score=44.31  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.+.  |.+|+ +.|.+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~-~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVT-VVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence            5899999999999999999988  68888 45653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=92.40  E-value=0.27  Score=46.91  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -++.|....++..+   +.+++|+++.|.| .|.+|+.+++.|.+.|++|+ +.+.+
T Consensus       100 Td~~g~~~~l~~~~---~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~-i~~R~  152 (287)
T 1lu9_A          100 TTAAAGVALVVKAA---GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCGRK  152 (287)
T ss_dssp             HHHHHHHHHHHHHT---TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             chHHHHHHHHHHhh---ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEECC
Confidence            45777776655321   6778999999999 89999999999999999955 77764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.39  E-value=0.1  Score=54.07  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec--C-C
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD--L-N  289 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~--~-~  289 (424)
                      .+.++++++|+|.|.|.+|+.+++.|.+. |.+|+ |+|.+          .+++.+..++.+ +..    ..++  + +
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~-v~~R~----------~~ka~~la~~~~-~~~----~~~D~~d~~   80 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVT-VACRT----------LANAQALAKPSG-SKA----ISLDVTDDS   80 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEE-EEESS----------HHHHHHHHGGGT-CEE----EECCTTCHH
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEE-EEECC----------HHHHHHHHHhcC-CcE----EEEecCCHH
Confidence            35668889999999999999999999988 66754 77764          344444443311 110    0111  1 1


Q ss_pred             c---ccccccceeeeccccCcccccccc-cc--cceEEEecCCCCCCHHHHHHHHhCCceEecccccc
Q 014463          290 D---LLVHECDVLVPCALGGVLNKENAA-DV--KAKFIIEAANHPTDPEADEILSKKGVVILPDIYAN  351 (424)
Q Consensus       290 ~---ll~~~~DIliPaA~~~~It~~na~-~i--~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laN  351 (424)
                      +   ++ .++|++|-|+-.. .+..-+. .+  +..++......|.+.+..+..+++|+.+++..-.+
T Consensus        81 ~l~~~l-~~~DvVIn~tp~~-~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~  146 (467)
T 2axq_A           81 ALDKVL-ADNDVVISLIPYT-FHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLD  146 (467)
T ss_dssp             HHHHHH-HTSSEEEECSCGG-GHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBT
T ss_pred             HHHHHH-cCCCEEEECCchh-hhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcC
Confidence            2   22 3799999996533 2211111 12  23333322112222233456678899888776543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.32  E-value=0.19  Score=46.66  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~-~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVI-VSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999995 8999999999999999988 5565

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.24  E-value=0.14  Score=49.53  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|++|.|.|.|.||...++.|.+.|++|+-|+
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtVia   43 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEc
Confidence            46899999999999999999999999999988444

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=92.20  E-value=0.49  Score=47.35  Aligned_cols=33  Identities=42%  Similarity=0.714  Sum_probs=30.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..+|+|-|||.+|+.+.+.|.++...||+|.|.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaIndl   53 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAINDL   53 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            478999999999999999999889999999886

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=91.99  E-value=0.22  Score=50.75  Aligned_cols=113  Identities=14%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-----cCCcc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-----DLNDL  291 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-----~~~~l  291 (424)
                      .+-.||+|+|+|.+|...++.|.+ .+++|++|+|.+          .+.+.+..+.-.. .+++.....     +.+++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~----------~~~~~~~a~~~~~-~g~~~~~~~~~~~~~~~~l   86 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPD----------PYMVGRAQEILKK-NGKKPAKVFGNGNDDYKNM   86 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSC----------HHHHHHHHHHHHH-TTCCCCEEECSSTTTHHHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCC----------HHHHHHHHHHHHh-cCCCCCceeccCCCCHHHH
Confidence            345799999999999998888876 478999999974          3444443321000 012222333     23567


Q ss_pred             cc-cccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          292 LV-HECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       292 l~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      ++ .++|+++-|.- +..+.+.+.. +  ..-++||   -|+  | .+++++   .+++|+.+.
T Consensus        87 l~~~~vD~V~i~tp-~~~h~~~~~~al~aGkhV~~E---KP~a~~~~ea~~l~~~a~~~g~~~~  146 (444)
T 2ixa_A           87 LKDKNIDAVFVSSP-WEWHHEHGVAAMKAGKIVGME---VSGAITLEECWDYVKVSEQTGVPLM  146 (444)
T ss_dssp             TTCTTCCEEEECCC-GGGHHHHHHHHHHTTCEEEEC---CCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             hcCCCCCEEEEcCC-cHHHHHHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            75 47999998853 3334443332 2  4468888   353  3 345444   457787654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=91.95  E-value=0.22  Score=51.33  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHH----------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-e
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHE----------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-M  286 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~----------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i  286 (424)
                      ++..+|+|.|+|+||+.+++.|.+          .+.+|++|+|++.          .......         ++... -
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~----------~~~~~~~---------~~~~~~~   68 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL----------DKAEALA---------GGLPLTT   68 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH----------HHHHHHH---------TTCCEES
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH----------HHhhhhc---------ccCcccC
Confidence            355799999999999999988764          4689999999852          2222221         11111 2


Q ss_pred             cCCcccc-cccceeeeccccCccccccccc-c--cceEEEecCCCCC-CHHHH---HHHHhCCceEecccccc-ccCc--
Q 014463          287 DLNDLLV-HECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT-DPEAD---EILSKKGVVILPDIYAN-SGGV--  355 (424)
Q Consensus       287 ~~~~ll~-~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~-t~eA~---~iL~~rGI~viPD~laN-aGGV--  355 (424)
                      +.+++++ .++|+++.|.-+...+.+.+.. +  +..+|+|  |-.. ..+++   +..+++|+.+.=  -++ .+|.  
T Consensus        69 d~~ell~d~diDvVve~tp~~~~h~~~~~~AL~aGKhVvte--nkal~a~~~~eL~~~A~~~gv~l~~--Ea~V~~giPi  144 (444)
T 3mtj_A           69 NPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTA--NKHLVAKYGNEIFAAAQAKGVMVTF--EAAVAGGIPI  144 (444)
T ss_dssp             CTHHHHTCTTCCEEEECCCSSTTHHHHHHHHHHTTCEEEEC--CHHHHHHHHHHHHHHHHHHTCCEEC--GGGSSTTSCH
T ss_pred             CHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHcCCEEEEC--CcccCHHHHHHHHHHHHHhCCeEEE--EEeeeCChHH
Confidence            3356664 5799999996544444444322 2  3456664  3222 22333   345678887642  222 2222  


Q ss_pred             chhhHHHhhh-----cccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463          356 TVSYFEWVQN-----IQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC  400 (424)
Q Consensus       356 i~s~~E~~qn-----~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~  400 (424)
                      +..--|++..     +.+. .-+-.-+..++.+. ...|.+++..|++.|.
T Consensus       145 i~~LrelL~~~~Ig~I~GIlnGT~nyilt~m~~~-g~~f~~~l~eAq~lGy  194 (444)
T 3mtj_A          145 IKALREGLTANRIEWLAGIINGTSNFILSEMRDK-GAAFDDVLKEAQRLGY  194 (444)
T ss_dssp             HHHHHTTTTTSCEEEEEEECCHHHHHHHHHHHHH-CCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhCCCCceEEEEEcCCcccccccCCCC-CCCHHHHHHHHHHcCC
Confidence            1111222211     0010 11222333333221 2378899999988775

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=91.94  E-value=0.26  Score=47.86  Aligned_cols=108  Identities=14%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          219 SNMKFAIQGFGNVGS-WAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~-~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      +-.||+|+|+|++|. ..+..|...+++|++|+|.+-          +...+..++.+....|     -+.+++++ .++
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~----------~~~~~~a~~~~~~~~~-----~~~~~ll~~~~~   67 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDS----------DNRAKFTSLFPSVPFA-----ASAEQLITDASI   67 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCT----------TSCHHHHHHSTTCCBC-----SCHHHHHTCTTC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCH----------HHHHHHHHhcCCCccc-----CCHHHHhhCCCC
Confidence            346999999999996 566767678999999999752          1222333332222222     12256664 478


Q ss_pred             ceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      |+++-|.- +..+.+.+.. +  +.-++||=   |+  | .+++++   .+++|+.+.
T Consensus        68 D~V~i~tp-~~~h~~~~~~al~aGkhVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  121 (336)
T 2p2s_A           68 DLIACAVI-PCDRAELALRTLDAGKDFFTAK---PPLTTLEQLDAVQRRVAETGRKFA  121 (336)
T ss_dssp             CEEEECSC-GGGHHHHHHHHHHTTCEEEECS---SCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             CEEEEeCC-hhhHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Confidence            98887743 3333333322 2  33477773   43  3 344443   456676654

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=91.83  E-value=0.057  Score=52.62  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=68.5

Q ss_pred             CCeEEEEe-cChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec--CCcccccc
Q 014463          220 NMKFAIQG-FGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD--LNDLLVHE  295 (424)
Q Consensus       220 g~~vaIqG-fGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~--~~~ll~~~  295 (424)
                      -.||+|.| +|++|+.+++.+. ..+..+|++.|.++.  +..|.|+.++..       +.  +..-++.  .++++. +
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~--~~~G~d~gel~G-------~~--~~gv~v~~dl~~ll~-~   88 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS--SFVDKDASILIG-------SD--FLGVRITDDPESAFS-N   88 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC--TTTTSBGGGGTT-------CS--CCSCBCBSCHHHHTT-S
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--cccccchHHhhc-------cC--cCCceeeCCHHHHhc-C
Confidence            36899999 9999999999886 468999999998652  124666654321       00  0011122  235554 8


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHH----HhCCceEecccc
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEIL----SKKGVVILPDIY  349 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL----~~rGI~viPD~l  349 (424)
                      +||+|-+..... ..+|+..   -+..+|+.-.  ..+++-.+.|    ++.++++.|-|.
T Consensus        89 aDVvIDFT~p~a-~~~~~~~~l~~Gv~vViGTT--G~~~e~~~~L~~aa~~~~~~~a~N~S  146 (288)
T 3ijp_A           89 TEGILDFSQPQA-SVLYANYAAQKSLIHIIGTT--GFSKTEEAQIADFAKYTTIVKSGNMS  146 (288)
T ss_dssp             CSEEEECSCHHH-HHHHHHHHHHHTCEEEECCC--CCCHHHHHHHHHHHTTSEEEECSCCC
T ss_pred             CCEEEEcCCHHH-HHHHHHHHHHcCCCEEEECC--CCCHHHHHHHHHHhCcCCEEEECCCc
Confidence            999998875443 2344443   2556766432  3566433333    234566666553

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.83  E-value=0.17  Score=50.64  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++.|++|.|+|+|.+|+.+++.+...|++|+ +.|.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~-~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVT-VLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            4789999999999999999999999999987 56653

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=91.69  E-value=0.33  Score=47.46  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHH--------CCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHE--------HGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~  253 (424)
                      +++-.||+|+|+|.+|+.-++.+..        .+++||||+|.+
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~   66 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEAN   66 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC-
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCC
Confidence            3677899999999999876655432        478999999985

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.59  E-value=0.18  Score=48.58  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             HHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          212 AEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+-..|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus        21 ~~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~-i~~r~   62 (273)
T 4fgs_A           21 QSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVF-ITGRR   62 (273)
T ss_dssp             ----CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             hhhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            34445699999999995 7799999999999999988 77763

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.59  E-value=7.3  Score=39.95  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+|+|.|-||..+|-.|.+.|.+|+++ |.+
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~-Did   53 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGY-DVN   53 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEE-CSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEE-ECC
Confidence            58999999999999999999999999965 764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=91.52  E-value=0.17  Score=47.13  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r   40 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVA-IADI   40 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999994 8999999999999999988 5554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=91.52  E-value=0.36  Score=47.16  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CCCCeEEEEecC-hHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-
Q 014463          218 ISNMKFAIQGFG-NVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-  293 (424)
Q Consensus       218 l~g~~vaIqGfG-nVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-  293 (424)
                      -+-.||+|+|+| .+|...+..|.+.  +.++++|+|.+          .+...+..++.+....|     -+-+++++ 
T Consensus        16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~a~~~~~~~~~-----~~~~~ll~~   80 (340)
T 1zh8_A           16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT----------RSHAEEFAKMVGNPAVF-----DSYEELLES   80 (340)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS----------HHHHHHHHHHHSSCEEE-----SCHHHHHHS
T ss_pred             CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCC----------HHHHHHHHHHhCCCccc-----CCHHHHhcC
Confidence            345799999999 7999888888765  68999999973          45555555543321111     12356665 


Q ss_pred             cccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          294 HECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      .++|+++-|. ++..+.+-+.. +  +..+++|=   |+  | .+++++   .+++|+.+.
T Consensus        81 ~~vD~V~i~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  137 (340)
T 1zh8_A           81 GLVDAVDLTL-PVELNLPFIEKALRKGVHVICEK---PISTDVETGKKVVELSEKSEKTVY  137 (340)
T ss_dssp             SCCSEEEECC-CGGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             CCCCEEEEeC-CchHHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHcCCeEE
Confidence            4799999884 33334333332 2  44688884   53  3 455544   357777654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.37  E-value=3.9  Score=41.83  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.+.  |.+|+ +.|.+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~-~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVT-VVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEE-EECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence            5899999999999999999988  78987 55654

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=91.28  E-value=0.14  Score=52.09  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcc
Q 014463          219 SNMKFAIQGF----GNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDL  291 (424)
Q Consensus       219 ~g~~vaIqGf----GnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~l  291 (424)
                      +-.||+|+|+    |.+|...++.|.+.  +++|++|+|.+          .+.+.+..++.+.    +..... +.+++
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~----------~~~~~~~a~~~g~----~~~~~~~~~~~l   84 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPK----------IETSIATIQRLKL----SNATAFPTLESF   84 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHTTC----TTCEEESSHHHH
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCC----------HHHHHHHHHHcCC----CcceeeCCHHHH
Confidence            3479999999    99999888888775  78999999974          4455555544321    111222 33567


Q ss_pred             cc-cccceeeeccccCccccccccc-c--c------ceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463          292 LV-HECDVLVPCALGGVLNKENAAD-V--K------AKFIIEAANHPT--D-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       292 l~-~~~DIliPaA~~~~It~~na~~-i--~------akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi  345 (424)
                      ++ .++|+++-|.- +..+.+.+.. +  .      ..++||=   |+  | .+++++   .+++|+.+.
T Consensus        85 l~~~~vD~V~i~tp-~~~H~~~~~~al~aG~~~~~~khVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  150 (438)
T 3btv_A           85 ASSSTIDMIVIAIQ-VASHYEVVMPLLEFSKNNPNLKYLFVEW---ALACSLDQAESIYKAAAERGVQTI  150 (438)
T ss_dssp             HHCSSCSEEEECSC-HHHHHHHHHHHHHHGGGCTTCCEEEEES---SCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred             hcCCCCCEEEEeCC-cHHHHHHHHHHHHCCCCcccceeEEecC---cccCCHHHHHHHHHHHHHcCCeEE
Confidence            75 47999998843 3233333222 2  3      3588883   43  3 344443   457787654

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=91.26  E-value=1.8  Score=42.97  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.+.+. ...||||-|.
T Consensus         4 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~   36 (337)
T 3v1y_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5899999999999999988776 4789999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.24  E-value=0.66  Score=45.00  Aligned_cols=102  Identities=19%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLV  293 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~  293 (424)
                      +.++|+|+|.|++|+.++..|.+.|    ..|+ +.|.+.     +   .+.+.+..+. |       ....+ +.+.. 
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r~~-----~---~~~~~~l~~~-G-------~~~~~~~~e~~-   82 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSPDM-----D---LATVSALRKM-G-------VKLTPHNKETV-   82 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECSCT-----T---SHHHHHHHHH-T-------CEEESCHHHHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECCCc-----c---HHHHHHHHHc-C-------CEEeCChHHHh-
Confidence            3468999999999999999999999    5665 666532     1   0122222221 1       22221 22222 


Q ss_pred             cccceeeeccccCccccccc----cccc-ceEEEecCCCCCCHHHHHHHHh
Q 014463          294 HECDVLVPCALGGVLNKENA----ADVK-AKFIIEAANHPTDPEADEILSK  339 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na----~~i~-akiIvEgAN~p~t~eA~~iL~~  339 (424)
                      .+||++|-|--...+ ++-+    +.++ -++|+.-+|+-...+..+.|.+
T Consensus        83 ~~aDvVilav~~~~~-~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~  132 (322)
T 2izz_A           83 QHSDVLFLAVKPHII-PFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA  132 (322)
T ss_dssp             HHCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred             ccCCEEEEEeCHHHH-HHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhh
Confidence            379999988754332 2222    2232 3688988886544445566765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.20  E-value=5.8  Score=40.59  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..|++|+|.|.||..+|..|.+.|.+|+ +.|.+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~-~~D~~   40 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVV-CVDKD   40 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            3699999999999999999999999998 55754

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=91.19  E-value=0.075  Score=49.53  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCCC
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDITG  254 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~G  254 (424)
                      ||-|-.-.+..-+.+|.+ +..+|+|.|.|+.|+.+++.+  .+.|.++||+.|.+-
T Consensus        65 GY~V~~L~~~i~~~Lg~~-~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp  120 (212)
T 3keo_A           65 GYDVKKLMNFFAEILNDH-STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDS  120 (212)
T ss_dssp             SEEHHHHHHHHHHHTTTT-SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTT
T ss_pred             CEEHHHHHHHHHHHhCCC-CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCc
Confidence            555555555544566765 456999999999999999874  457899999999753

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=91.16  E-value=0.2  Score=48.72  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Cccc------
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLL------  292 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll------  292 (424)
                      +||+|+|+ |.+|..-++.|.+.+.++++|+|.+-..        .   ...      ..|++....++ ++++      
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~--------~---~~~------~~~~~~~~~~~~~~ll~~~~~l   66 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV--------G---IID------SISPQSEFFTEFEFFLDHASNL   66 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC--------G---GGG------GTCTTCEEESSHHHHHHHHHHH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH--------H---HHH------hhCCCCcEECCHHHHHHhhhhh
Confidence            68999999 7899999999988899999999975310        0   001      12344443332 4555      


Q ss_pred             ----ccccceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHH---HHhCCceEe
Q 014463          293 ----VHECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEI---LSKKGVVIL  345 (424)
Q Consensus       293 ----~~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~i---L~~rGI~vi  345 (424)
                          ..++|+++=|. .+..+.+-+..   -+..++||=-=.....+++++   .+++|+.+.
T Consensus        67 ~~~~~~~vD~V~I~t-P~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~  128 (318)
T 3oa2_A           67 KRDSATALDYVSICS-PNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY  128 (318)
T ss_dssp             TTSTTTSCCEEEECS-CGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             hhccCCCCcEEEECC-CcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence                46788887663 33444443332   144677874111112445443   345666543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.07  E-value=0.88  Score=42.75  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      ++|+|+|+|++|+.+++.|.+.|.  +|+ +.|.+          .+.+.... +.|...     ... +.++.+..+||
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~----------~~~~~~~~-~~g~~~-----~~~~~~~~~~~~~aD   64 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDIN----------PESISKAV-DLGIID-----EGTTSIAKVEDFSPD   64 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSC----------HHHHHHHH-HTTSCS-----EEESCGGGGGGTCCS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEE-EEeCC----------HHHHHHHH-HCCCcc-----cccCCHHHHhcCCCC
Confidence            489999999999999999999998  776 55653          23333322 222211     111 22333322799


Q ss_pred             eeeeccccCcccccccc----cc-cceEEEecCCCCCC--HHHHHHHHh
Q 014463          298 VLVPCALGGVLNKENAA----DV-KAKFIIEAANHPTD--PEADEILSK  339 (424)
Q Consensus       298 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p~t--~eA~~iL~~  339 (424)
                      ++|-|.-... +.+.+.    .+ .-.+|+..+|....  ....+.+.+
T Consensus        65 vVilavp~~~-~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~  112 (281)
T 2g5c_A           65 FVMLSSPVRT-FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (281)
T ss_dssp             EEEECSCHHH-HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             EEEEcCCHHH-HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc
Confidence            9998864432 222222    22 23478888887642  223345544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=91.01  E-value=0.11  Score=50.91  Aligned_cols=104  Identities=17%  Similarity=0.280  Sum_probs=62.3

Q ss_pred             CeEEEEecChHHHH-HHH-HHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc-c
Q 014463          221 MKFAIQGFGNVGSW-AAK-FFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH-E  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~-~a~-~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~-~  295 (424)
                      .||+|+|+|++|+. .+. .+. ..++++++|+|.+-     +     .. +      ....+++.... +.+++++. +
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~-----~-----~~-~------~~~~~~~~~~~~~~~~ll~~~~   65 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHA-----K-----PE-E------QAPIYSHIHFTSDLDEVLNDPD   65 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSC-----C-----GG-G------GSGGGTTCEEESCTHHHHTCTT
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCH-----h-----HH-H------HHHhcCCCceECCHHHHhcCCC
Confidence            58999999999985 566 433 35899999999752     1     11 1      11233344333 34667754 6


Q ss_pred             cceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          296 CDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      +|+++-|. ++..+.+.+..   -+..+++|   -|+  | .++++   ..+++|+.+.
T Consensus        66 ~D~V~i~t-p~~~h~~~~~~al~aGk~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~  120 (345)
T 3f4l_A           66 VKLVVVCT-HADSHFEYAKRALEAGKNVLVE---KPFTPTLAQAKELFALAKSKGLTVT  120 (345)
T ss_dssp             EEEEEECS-CGGGHHHHHHHHHHTTCEEEEC---SSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEcC-ChHHHHHHHHHHHHcCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            99999875 44444444333   24578888   353  3 34544   3456777654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.00  E-value=4.2  Score=41.85  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=29.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++|+|+|.|.||..+|..|.+.|.+|++ .|.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~-~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFC-LDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEE-EECC
Confidence            47999999999999999999999999884 4653

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=90.79  E-value=0.71  Score=45.19  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          191 GSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       191 Gs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |..+-.+.|-+|++..    |++.+.+++|++++|+|- .-||+-++.+|.++++.|. ++.++
T Consensus       154 g~~~~~PcTp~gv~~l----L~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVT-i~Hs~  212 (303)
T 4b4u_A          154 GEAAYGSATPAGIMTI----LKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVT-ICHSR  212 (303)
T ss_dssp             TCCCCCCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCCcccCccHHHHHHH----HHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEE-EecCC
Confidence            3344457899887654    667899999999999994 6789999999999999987 77664

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=90.74  E-value=0.17  Score=50.38  Aligned_cols=105  Identities=21%  Similarity=0.351  Sum_probs=62.8

Q ss_pred             CeEEEEecC-hHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc-ccc
Q 014463          221 MKFAIQGFG-NVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH-ECD  297 (424)
Q Consensus       221 ~~vaIqGfG-nVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~-~~D  297 (424)
                      .||+|+|+| .+|...+..|.+ .+.++++|+|.+          .+...+..++.+ +..|     -+.+++++. ++|
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~~g-~~~~-----~~~~ell~~~~vD   66 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPN----------EDVRERFGKEYG-IPVF-----ATLAEMMQHVQMD   66 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSC----------HHHHHHHHHHHT-CCEE-----SSHHHHHHHSCCS
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCC----------HHHHHHHHHHcC-CCeE-----CCHHHHHcCCCCC
Confidence            689999999 999888888876 478999999974          444544444332 2111     233567754 689


Q ss_pred             eeeeccccCcccccccccc---cceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          298 VLVPCALGGVLNKENAADV---KAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       298 IliPaA~~~~It~~na~~i---~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      +++-|.- +..+.+.+...   ...+++|=   |+  | .++++   ..+++|+.+.
T Consensus        67 ~V~i~tp-~~~H~~~~~~al~aGk~Vl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  119 (387)
T 3moi_A           67 AVYIASP-HQFHCEHVVQASEQGLHIIVEK---PLTLSRDEADRMIEAVERAGVHLV  119 (387)
T ss_dssp             EEEECSC-GGGHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             EEEEcCC-cHHHHHHHHHHHHCCCceeeeC---CccCCHHHHHHHHHHHHHhCCeEE
Confidence            9987743 33333333321   34577774   42  2 34443   3456666543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=90.68  E-value=0.5  Score=45.76  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +||+|+|+ |.+|..-++.|.+.+.++++|+|.+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~   37 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPA   37 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSS
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            68999999 7899999999988899999999975

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.67  E-value=0.67  Score=44.95  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=45.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccC-CCCeee-cCCccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDF-QGGNAM-DLNDLLVHEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~-~~~~~i-~~~~ll~~~~  296 (424)
                      ..++|+|+|.|.+|+..|..|. .|..|+ +.|.+          .+.+.+..+.  -.... .+.+.. +.++  -.+|
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~-v~d~~----------~~~~~~~~~~--l~~~~~~~i~~~~~~~~--~~~a   74 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVV-LQDVS----------EKALEAAREQ--IPEELLSKIEFTTTLEK--VKDC   74 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEE-EECSC----------HHHHHHHHHH--SCGGGGGGEEEESSCTT--GGGC
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEE-EEECC----------HHHHHHHHHH--HHHHHhCCeEEeCCHHH--HcCC
Confidence            3579999999999999999999 999987 66653          3444444433  00000 011111 2233  3578


Q ss_pred             ceeeeccccCc
Q 014463          297 DVLVPCALGGV  307 (424)
Q Consensus       297 DIliPaA~~~~  307 (424)
                      |+.|.|..++.
T Consensus        75 DlVieavpe~~   85 (293)
T 1zej_A           75 DIVMEAVFEDL   85 (293)
T ss_dssp             SEEEECCCSCH
T ss_pred             CEEEEcCcCCH
Confidence            99888876553

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=90.60  E-value=0.32  Score=45.80  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+++|+.|.++|++|+ +.+.+
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~r~   39 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVA-IAAKS   39 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEecc
Confidence            3588999999995 8999999999999999988 55543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=90.60  E-value=0.38  Score=45.60  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.|- +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vv-i~~r~   42 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVV-CAARR   42 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            3689999999885 7899999999999999998 77764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.52  E-value=0.31  Score=45.65  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.|.+   -+|..+|+.|.++|++|+ ++|.+
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vv-i~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLV-FTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEECC
Confidence            36899999999963   599999999999999988 77764

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=90.46  E-value=0.35  Score=47.24  Aligned_cols=70  Identities=11%  Similarity=0.171  Sum_probs=43.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC--------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEH--------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN  289 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~--------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~  289 (424)
                      ++..||+|+|+|.+|+.-++.+.+.        +++|+||+|.+          .+.+.+..++.+--.-|     -+-+
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~----------~~~a~~~a~~~g~~~~~-----~d~~   68 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRD----------AEAVRAAAGKLGWSTTE-----TDWR   68 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSS----------HHHHHHHHHHHTCSEEE-----SCHH
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCC----------HHHHHHHHHHcCCCccc-----CCHH
Confidence            4557999999999998877666532        35899999974          45565555543321111     1224


Q ss_pred             cccc-cccceeeec
Q 014463          290 DLLV-HECDVLVPC  302 (424)
Q Consensus       290 ~ll~-~~~DIliPa  302 (424)
                      ++++ .++|+++=|
T Consensus        69 ~ll~~~~iDaV~I~   82 (390)
T 4h3v_A           69 TLLERDDVQLVDVC   82 (390)
T ss_dssp             HHTTCTTCSEEEEC
T ss_pred             HHhcCCCCCEEEEe
Confidence            5553 356766655

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.38  E-value=0.21  Score=46.65  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~-~~~r   40 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVL-LTGR   40 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999995 8999999999999999998 5554

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=90.34  E-value=0.85  Score=39.31  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463          220 NMKFAIQGF----GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE  295 (424)
Q Consensus       220 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~  295 (424)
                      -++|+|+|.    |++|..+++.|.+.|.+|..+ |.+..     |-.+          ..+.-|+     +.+++- .+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~v-np~~~-----g~~i----------~G~~~~~-----sl~el~-~~   70 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPV-SPKVA-----GKTL----------LGQQGYA-----TLADVP-EK   70 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEE-CSSST-----TSEE----------TTEECCS-----STTTCS-SC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEe-CCccc-----cccc----------CCeeccC-----CHHHcC-CC
Confidence            468999999    899999999999999986533 32210     0000          0111121     123333 36


Q ss_pred             cceeeeccccCcccccccc---cccce-EEEecCCCCCCHHHHHHHHhCCceEe-ccccccccCcchh
Q 014463          296 CDVLVPCALGGVLNKENAA---DVKAK-FIIEAANHPTDPEADEILSKKGVVIL-PDIYANSGGVTVS  358 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~---~i~ak-iIvEgAN~p~t~eA~~iL~~rGI~vi-PD~laNaGGVi~s  358 (424)
                      +|+.+-|--. ....+-+.   +.++| +++..  +-.+.+..+.++++|+.++ |    |+=|++..
T Consensus        71 ~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~--~~~~~~l~~~a~~~Gi~~igp----nc~g~~~~  131 (145)
T 2duw_A           71 VDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQL--GVINEQAAVLAREAGLSVVMD----RCPAIELP  131 (145)
T ss_dssp             CSEEECCSCS-THHHHHHHHHHHHTCCEEECCT--TCCCHHHHHHHHTTTCEEECS----CCHHHHST
T ss_pred             CCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcC--ChHHHHHHHHHHHcCCEEEcC----CeeeEEcc
Confidence            7777766432 22222221   12333 45543  2347788889999999987 4    44455443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.33  E-value=0.31  Score=44.27  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ++++++|.|.|. |.+|+++++.|.+.|++|++++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~   52 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMV   52 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence            488999999996 9999999999999999999654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=90.33  E-value=0.22  Score=47.09  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+++|+.|.+.|++|+ +.|.+
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~-~~~~~   44 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADII-AVDIC   44 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEecc
Confidence            4588999999995 8899999999999999998 45543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=90.33  E-value=0.17  Score=49.12  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      +-.||+|+|+|++|...++.|.+ .+.++++|+|.+
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~   39 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRT   39 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSC
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            34689999999999998888765 468999999975

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.29  E-value=0.65  Score=47.12  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.||..+|..|.+.|.+|+ +.|.+
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~-~~d~~   32 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVI-GVDVS   32 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            479999999999999999999999987 45653

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=90.27  E-value=0.27  Score=46.52  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.| .|.+|+++++.|.++|++|+ +.|.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~r   37 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVA-VLDK   37 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEeC
Confidence            47899999999 48999999999999999998 4554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=90.26  E-value=0.68  Score=45.30  Aligned_cols=105  Identities=25%  Similarity=0.355  Sum_probs=61.8

Q ss_pred             CeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc-cc
Q 014463          221 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH-EC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~-~~  296 (424)
                      .||+|+|+|.+|+ ..+..|.+ .+++|++|+|.+         ..+++.+...       .++.... +.++++.. ++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~---------~~~~~a~~~~-------~~~~~~~~~~~~ll~~~~~   66 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH---------VNEKAAAPFK-------EKGVNFTADLNELLTDPEI   66 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT---------CCHHHHHHHH-------TTTCEEESCTHHHHSCTTC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC---------HHHHHHHhhC-------CCCCeEECCHHHHhcCCCC
Confidence            5899999999998 56776755 489999999986         1122322111       1222222 34667754 69


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      |+++-|. .+..+.+.+..   -...++||=   |+  | .++++   ..+++|+.+.
T Consensus        67 D~V~i~t-p~~~h~~~~~~al~aGk~Vl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  120 (349)
T 3i23_A           67 ELITICT-PAHTHYDLAKQAILAGKSVIVEK---PFCDTLEHAEELFALGQEKGVVVM  120 (349)
T ss_dssp             CEEEECS-CGGGHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEeC-CcHHHHHHHHHHHHcCCEEEEEC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            9998874 33334333332   144677763   53  2 44544   3456777654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.13  E-value=0.19  Score=47.19  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++|+++.|.|. |.+|+++|+.|.++|++|+ +.|.+
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADII-LFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEE-EEccc
Confidence            478999999995 8999999999999999998 55654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=90.12  E-value=0.26  Score=46.69  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~-~~~r   48 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGATVI-MAVR   48 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEEC
Confidence            589999999995 8999999999999999998 4454

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=90.10  E-value=0.44  Score=47.39  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|.|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            567899999999999999999999997666688864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=90.06  E-value=0.3  Score=45.23  Aligned_cols=36  Identities=33%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~-~~~r   41 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVV-IVDR   41 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcC
Confidence            4578999999995 8899999999999999988 4554

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=89.95  E-value=0.23  Score=49.01  Aligned_cols=108  Identities=16%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             CCCCeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-
Q 014463          218 ISNMKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-  293 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-  293 (424)
                      ++..||+|+|+|++|+. .++.|.+. ++++++|+|.+          .+...+..++      |++.... +.+++++ 
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~----------~~~~~~~a~~------~~~~~~~~~~~~ll~~   66 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSD----------LERARRVHRF------ISDIPVLDNVPAMLNQ   66 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSS----------HHHHGGGGGT------SCSCCEESSHHHHHHH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCC----------HHHHHHHHHh------cCCCcccCCHHHHhcC
Confidence            34579999999999984 78888765 79999999974          3443333332      2222222 3356665 


Q ss_pred             cccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          294 HECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      .++|+++-|. .+..+.+.+.. +  +..++||=   |+  | .++++   ..+++|+.+.
T Consensus        67 ~~vD~V~i~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  123 (359)
T 3m2t_A           67 VPLDAVVMAG-PPQLHFEMGLLAMSKGVNVFVEK---PPCATLEELETLIDAARRSDVVSG  123 (359)
T ss_dssp             SCCSEEEECS-CHHHHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCEEEEcC-CcHHHHHHHHHHHHCCCeEEEEC---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            4689888763 23333333322 1  34577774   53  2 34444   3456676544

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=89.90  E-value=0.34  Score=50.05  Aligned_cols=109  Identities=12%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CCCeEEEEec----ChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcc
Q 014463          219 SNMKFAIQGF----GNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDL  291 (424)
Q Consensus       219 ~g~~vaIqGf----GnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~l  291 (424)
                      +-.||+|+|+    |.+|...++.|.+.  +++|++|+|.+          .+...+..++.+    .+..... +.+++
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~----------~~~a~~~a~~~g----~~~~~~~~d~~el  103 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPT----------LKSSLQTIEQLQ----LKHATGFDSLESF  103 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSC----------HHHHHHHHHHTT----CTTCEEESCHHHH
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCC----------HHHHHHHHHHcC----CCcceeeCCHHHH
Confidence            3468999999    99999989888775  78999999974          445555555432    1111222 23567


Q ss_pred             cc-cccceeeeccccCccccccccc-c--c------ceEEEecCCCCC--C-HHHHHH---HHhCC-ceEe
Q 014463          292 LV-HECDVLVPCALGGVLNKENAAD-V--K------AKFIIEAANHPT--D-PEADEI---LSKKG-VVIL  345 (424)
Q Consensus       292 l~-~~~DIliPaA~~~~It~~na~~-i--~------akiIvEgAN~p~--t-~eA~~i---L~~rG-I~vi  345 (424)
                      ++ .++|+++-|.- +..+.+.+.. +  .      .-++||=   |+  | .+++++   .+++| +.+.
T Consensus       104 l~~~~vD~V~I~tp-~~~H~~~~~~al~aG~~~~~~khVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~~  170 (479)
T 2nvw_A          104 AQYKDIDMIVVSVK-VPEHYEVVKNILEHSSQNLNLRYLYVEW---ALAASVQQAEELYSISQQRANLQTI  170 (479)
T ss_dssp             HHCTTCSEEEECSC-HHHHHHHHHHHHHHSSSCSSCCEEEEES---SSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred             hcCCCCCEEEEcCC-cHHHHHHHHHHHHCCCCcCCceeEEEeC---CCcCCHHHHHHHHHHHHHcCCeEEE
Confidence            75 47999998853 2233332222 2  2      3488884   53  3 344443   45677 6553

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=89.90  E-value=0.3  Score=45.41  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r   37 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVV-LADV   37 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999995 9999999999999999998 4454

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.81  E-value=0.31  Score=46.20  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++|+.|.+.|++|+ +.|.
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~r   59 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVV-VADV   59 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            4688999999995 8999999999999999998 5554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=89.76  E-value=0.25  Score=46.56  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++|+.|.+.|++|+ +.|.
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~-~~~r   59 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVG-LHGT   59 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            588999999985 8999999999999999988 5554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=89.69  E-value=0.4  Score=47.94  Aligned_cols=44  Identities=14%  Similarity=0.171  Sum_probs=33.3

Q ss_pred             CeEEEEecChHHHHHHHHHHH---------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE---------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN  274 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~---------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~  274 (424)
                      .||+|+|+|.+|+.-++.|.+         .+++||||+|.+          .+.+.+..++.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~----------~~~a~~~a~~~   79 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD----------QAMAERHAAKL   79 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS----------HHHHHHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC----------HHHHHHHHHHc
Confidence            699999999999987777754         367999999974          45555555543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=89.65  E-value=0.62  Score=45.84  Aligned_cols=107  Identities=18%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc-
Q 014463          219 SNMKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH-  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~-  294 (424)
                      +-.||+|+|+|.+|+. .+..|.+. +++|++|+|.+-     +     +   ..      ..|++.... +-++++.. 
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-----~-----~---~~------~~~~~~~~~~~~~~ll~~~   64 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSK-----E-----L---SK------ERYPQASIVRSFKELTEDP   64 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSC-----C-----G---GG------TTCTTSEEESCSHHHHTCT
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCH-----H-----H---HH------HhCCCCceECCHHHHhcCC
Confidence            4469999999999986 67777654 899999999862     1     1   11      123333333 33667754 


Q ss_pred             ccceeeeccccCccccccccc-c--cceEEEecCCCCCCHHHHHH---HHhCCceEe
Q 014463          295 ECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDPEADEI---LSKKGVVIL  345 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~eA~~i---L~~rGI~vi  345 (424)
                      ++|+++-|. .+..+.+.+.. +  +..++||=-=.....+++++   .+++|+.+.
T Consensus        65 ~vD~V~i~t-p~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~  120 (362)
T 3fhl_A           65 EIDLIVVNT-PDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS  120 (362)
T ss_dssp             TCCEEEECS-CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEeC-ChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            699998883 33344333332 2  44688884211122455543   446677654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=89.47  E-value=0.34  Score=42.26  Aligned_cols=31  Identities=32%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+|+|.|..|..+|..|.++|.+|+ |.|..
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~-v~Ek~   34 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVH-LFDKS   34 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEE-EEECC
Confidence            59999999999999999999999987 88854

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=89.37  E-value=0.22  Score=48.93  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~-~~~~~   48 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGLRS   48 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EECCT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEE-EEECC
Confidence            467899999999999999999999999877 56654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=89.36  E-value=0.65  Score=46.29  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCC-CEEEEEEcCC
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHEHG-GKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD~~  253 (424)
                      +..||+|.| +|.+|+.+++.|.++. .+++++.|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~   51 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR   51 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch
Confidence            447999999 9999999999998765 5999998863

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=89.28  E-value=0.23  Score=47.07  Aligned_cols=68  Identities=6%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|++|+.+++.|.+. .+|+.+.|.+          .+.+.+..++.+.  .+     -+.++++ .+||++|
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~----------~~~~~~~~~~~g~--~~-----~~~~~~~-~~~DvVi   63 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRS----------IDRARNLAEVYGG--KA-----ATLEKHP-ELNGVVF   63 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSS----------HHHHHHHHHHTCC--CC-----CSSCCCC-C---CEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCC----------HHHHHHHHHHcCC--cc-----CCHHHHH-hcCCEEE
Confidence            4799999999999999998776 6665566653          3444444433222  11     1233443 2688888


Q ss_pred             eccccCc
Q 014463          301 PCALGGV  307 (424)
Q Consensus       301 PaA~~~~  307 (424)
                      -|.-...
T Consensus        64 lav~~~~   70 (276)
T 2i76_A           64 VIVPDRY   70 (276)
T ss_dssp             ECSCTTT
T ss_pred             EeCChHH
Confidence            7765443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.26  E-value=0.67  Score=46.02  Aligned_cols=97  Identities=13%  Similarity=0.006  Sum_probs=56.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-----eecCCccc-
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-----AMDLNDLL-  292 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-----~i~~~~ll-  292 (424)
                      .-++|+|+|.|++|..+|..|.+.|..|. +.|.+          .+.+.+..+.+.....+|+..     ..+. ++- 
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~-l~~r~----------~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~-d~~e   95 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVR-LWSYE----------SDHVDEMQAEGVNNRYLPNYPFPETLKAYC-DLKA   95 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEE-EECSC----------HHHHHHHHHHSSBTTTBTTCCCCTTEEEES-CHHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHcCCCcccCCCCccCCCeEEEC-CHHH
Confidence            34789999999999999999999999876 55553          334444443332222222221     1111 221 


Q ss_pred             -ccccceeeeccccCcccccccc----ccc-ceEEEecCCCC
Q 014463          293 -VHECDVLVPCALGGVLNKENAA----DVK-AKFIIEAANHP  328 (424)
Q Consensus       293 -~~~~DIliPaA~~~~It~~na~----~i~-akiIvEgAN~p  328 (424)
                       -.++|++|-|--... ..+.++    .++ -.+|+-.+|+-
T Consensus        96 a~~~aDvVilaVp~~~-~~~vl~~i~~~l~~~~ivvs~~kGi  136 (356)
T 3k96_A           96 SLEGVTDILIVVPSFA-FHEVITRMKPLIDAKTRIAWGTKGL  136 (356)
T ss_dssp             HHTTCCEEEECCCHHH-HHHHHHHHGGGCCTTCEEEECCCSC
T ss_pred             HHhcCCEEEECCCHHH-HHHHHHHHHHhcCCCCEEEEEeCCC
Confidence             237899998854332 222222    232 35788888864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=89.24  E-value=0.36  Score=45.60  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|+++.|.|. |.+|+++|+.|.+.|++|+.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~   62 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG   62 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc
Confidence            4589999999995 8999999999999999998554

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=88.93  E-value=1.8  Score=41.67  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-CCCCee------ecCCcccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-FQGGNA------MDLNDLLV  293 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-~~~~~~------i~~~~ll~  293 (424)
                      ++|+|.|.|++|..+|..|.+.|..|. +.+.+.         .+++.   +++-.+.. +.+...      .++.+-..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~-~~~r~~---------~~~i~---~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVS-VVSRSD---------YETVK---AKGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEE-EECSTT---------HHHHH---HHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCCh---------HHHHH---hCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            589999999999999999999999887 445421         22332   22112222 111111      12211122


Q ss_pred             cccceeeeccccCccccccccc----cc-ceEEEecCCCCCC-HHHHHHHHhCCceEe
Q 014463          294 HECDVLVPCALGGVLNKENAAD----VK-AKFIIEAANHPTD-PEADEILSKKGVVIL  345 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t-~eA~~iL~~rGI~vi  345 (424)
                      .++|++|-|--...+ ++.++.    ++ -.+|+-..|+--. ....+.|-+..|+.-
T Consensus        70 ~~~DlVilavK~~~~-~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g  126 (320)
T 3i83_A           70 TKPDCTLLCIKVVEG-ADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISG  126 (320)
T ss_dssp             SCCSEEEECCCCCTT-CCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEE
T ss_pred             CCCCEEEEecCCCCh-HHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEE
Confidence            379999988644433 233333    32 2477888888643 444455655545433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.92  E-value=0.8  Score=45.16  Aligned_cols=111  Identities=23%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccccc--ccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLV--HEC  296 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~--~~~  296 (424)
                      .+||+|.|.|.||+.+++.|.+ ...|. ++|.+          .+.+.+.++....+ ..    .+++ +++.+  .++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~-~~~~~----------~~~~~~~~~~~~~~-~~----d~~d~~~l~~~~~~~   78 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVY-IGDVN----------NENLEKVKEFATPL-KV----DASNFDKLVEVMKEF   78 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEE-EEESC----------HHHHHHHTTTSEEE-EC----CTTCHHHHHHHHTTC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeE-EEEcC----------HHHHHHHhccCCcE-EE----ecCCHHHHHHHHhCC
Confidence            3589999999999999999975 45654 66653          34443332211000 00    0111 22222  478


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCC-CCHHHHHHHHhCCceEecccc
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHP-TDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p-~t~eA~~iL~~rGI~viPD~l  349 (424)
                      |++|-|+-. ..+..-++.   -++.+ +.-+--+ ...+-++..+++|+.++|+.=
T Consensus        79 DvVi~~~p~-~~~~~v~~~~~~~g~~y-vD~s~~~~~~~~l~~~a~~~g~~~i~~~G  133 (365)
T 3abi_A           79 ELVIGALPG-FLGFKSIKAAIKSKVDM-VDVSFMPENPLELRDEAEKAQVTIVFDAG  133 (365)
T ss_dssp             SEEEECCCG-GGHHHHHHHHHHHTCEE-EECCCCSSCGGGGHHHHHHTTCEEECCCB
T ss_pred             CEEEEecCC-cccchHHHHHHhcCcce-EeeeccchhhhhhhhhhccCCceeeecCC
Confidence            999987643 344333322   23333 3333332 344556778899999998753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.92  E-value=0.28  Score=45.03  Aligned_cols=103  Identities=15%  Similarity=0.042  Sum_probs=59.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHE  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~  295 (424)
                      .++|+|.|+|.+|+.+++.|.+.|. |+ +.|.+          .+.+.+.. . + +.-+.+ . .++.+.|    -.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~-vid~~----------~~~~~~~~-~-~-~~~i~g-d-~~~~~~l~~a~i~~   71 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FV-LAEDE----------NVRKKVLR-S-G-ANFVHG-D-PTRVSDLEKANVRG   71 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EE-EESCG----------GGHHHHHH-T-T-CEEEES-C-TTCHHHHHHTTCTT
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EE-EEECC----------HHHHHHHh-c-C-CeEEEc-C-CCCHHHHHhcCcch
Confidence            3589999999999999999999998 76 55653          22333222 1 1 111100 0 1122222    236


Q ss_pred             cceeeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463          296 CDVLVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGVV  343 (424)
Q Consensus       296 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~  343 (424)
                      +|.+|-|.-....|   ...++++  +.++|+...|    ++-.+.|++.|+-
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~----~~~~~~l~~~G~~  120 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGAD  120 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSS----GGGHHHHHHHTCS
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECC----HhHHHHHHHCCCC
Confidence            88888775443222   2334443  4578886643    3445678888874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=88.89  E-value=1.1  Score=44.13  Aligned_cols=41  Identities=32%  Similarity=0.474  Sum_probs=33.5

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ++..+....|.+|.|+|.|.||..+++++...|++|+++..
T Consensus       179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~  219 (366)
T 1yqd_A          179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVIST  219 (366)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            44445444789999999999999999999999999986543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=88.86  E-value=0.27  Score=46.62  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+ +.|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~-~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVL-CADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            58899999998 48999999999999999998 5554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.85  E-value=0.31  Score=44.74  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++++++|.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~-~~~r   46 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVI-ISGS   46 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEcC
Confidence            4589999999994 8999999999999999998 4454

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.84  E-value=0.51  Score=46.35  Aligned_cols=30  Identities=23%  Similarity=0.272  Sum_probs=26.7

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|+|+|.|++|..+|..|.+.|..|+ +.|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~-~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVC-VWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEE-EECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence            89999999999999999999998876 5555

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.82  E-value=0.3  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++|+.|.++|++|+ +.|.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~-~~~r   47 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADII-ACDI   47 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEec
Confidence            589999999995 8999999999999999998 4554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=88.80  E-value=0.45  Score=44.01  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +.|.+
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIV-LNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            367899999985 9999999999999999988 45553

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=88.67  E-value=0.41  Score=47.86  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=64.9

Q ss_pred             CCCCeEEEEecCh---HHHHHHHHHHHC-CCEEEE-EEcCCCceeCCCCCCHHHHHHHHHhcCCc--ccCCCCeeecCCc
Q 014463          218 ISNMKFAIQGFGN---VGSWAAKFFHEH-GGKVVA-VSDITGAIKNPNGIDVPALLKYKKSNKSL--NDFQGGNAMDLND  290 (424)
Q Consensus       218 l~g~~vaIqGfGn---VG~~~a~~L~~~-GakVVa-VsD~~G~i~~~~GlDi~~L~~~~~~~g~v--~~~~~~~~i~~~~  290 (424)
                      ++-.||+|+|+|.   +|+.-+..+... ++++++ |+|.+          .+...+..++.+--  .-|     -+-++
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~----------~~~a~~~a~~~g~~~~~~~-----~~~~~   74 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDID----------PIRGSAFGEQLGVDSERCY-----ADYLS   74 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSS----------HHHHHHHHHHTTCCGGGBC-----SSHHH
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCC----------HHHHHHHHHHhCCCcceee-----CCHHH
Confidence            4567999999999   998887777654 489998 78873          45555555543211  122     12356


Q ss_pred             cccc------ccceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          291 LLVH------ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       291 ll~~------~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      +++.      ++|+++-| ..+..+.+.+..   -...++||=   |+  | .++++   ..+++|+.+.
T Consensus        75 ll~~~~~~~~~vD~V~i~-tp~~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  140 (398)
T 3dty_A           75 MFEQEARRADGIQAVSIA-TPNGTHYSITKAALEAGLHVVCEK---PLCFTVEQAENLRELSHKHNRIVG  140 (398)
T ss_dssp             HHHHHTTCTTCCSEEEEE-SCGGGHHHHHHHHHHTTCEEEECS---CSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             HHhcccccCCCCCEEEEC-CCcHHHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            6653      58988865 333344443332   144677874   43  2 35544   3456777654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=88.66  E-value=0.48  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.+.+
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~r~   42 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVA-LVAKS   42 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEE-EEESC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            3578999999995 8999999999999999998 45543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.51  E-value=0.33  Score=46.28  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |-+|+++++.|.++|++|+ +.|.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~-~~~~   81 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVA-INYL   81 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            488999999995 8999999999999999988 5554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.46  E-value=0.44  Score=44.56  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++++|.|.|.|-+|+++++.|.+.|.+|++++-.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   35 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRS   35 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4679999999999999999999999999977543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=88.42  E-value=0.25  Score=45.93  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=25.1

Q ss_pred             CCeEEEEecChHHHHHHHH--HHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKF--FHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~--L~~~GakVVaVsD~~  253 (424)
                      ..+|+|.|.|++|+.+++.  +...|.++||+.|.+
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~d  120 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDIN  120 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESC
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCC
Confidence            3689999999999999994  446689999999975

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=88.35  E-value=1.8  Score=37.01  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=26.4

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEE
Q 014463          220 NMKFAIQGF----GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       220 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaV  249 (424)
                      -++|+|+|.    |++|..+++.|.+.|.+|..|
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~v   46 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPV   46 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEe
Confidence            468999999    899999999999999986654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=88.20  E-value=0.45  Score=48.52  Aligned_cols=36  Identities=28%  Similarity=0.402  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++++++|.|.|.|..|..+|++|+++|++|. ++|.+
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~-~~D~~   41 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVT-VNDGK   41 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEE-EEESS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            4789999999999999999999999999987 78875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.15  E-value=0.33  Score=46.25  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=55.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-----C-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-CcccCCCC------eeec
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-----G-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SLNDFQGG------NAMD  287 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-----G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~v~~~~~~------~~i~  287 (424)
                      ++|+|+|.|++|+.+|..|.+.     | ..|+ +.|. .          +.+.++.++.| .+...++.      ...+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r-~----------~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~   76 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVS-WIAR-G----------AHLEAIRAAGGLRVVTPSRDFLARPTCVTD   76 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEE-EECC-H----------HHHHHHHHHTSEEEECSSCEEEECCSEEES
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEE-EEEc-H----------HHHHHHHhcCCeEEEeCCCCeEEecceEec
Confidence            5899999999999999999988     8 8877 4443 1          22333333122 22221111      1112


Q ss_pred             CCcccccccceeeeccccCccccccccc----cc-ceEEEecCCCCCC
Q 014463          288 LNDLLVHECDVLVPCALGGVLNKENAAD----VK-AKFIIEAANHPTD  330 (424)
Q Consensus       288 ~~~ll~~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t  330 (424)
                      +.+. ..++|++|-|--...+ ++-++.    ++ -++|+--.|+.-+
T Consensus        77 ~~~~-~~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           77 NPAE-VGTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             CHHH-HCCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             Cccc-cCCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            2222 2479999988654443 333332    22 3578888888643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.14  E-value=0.54  Score=44.72  Aligned_cols=32  Identities=31%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|++|+.+|..|.+.|.+|+ +.|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~-l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVT-AYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence            589999999999999999999999987 56764

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=88.06  E-value=1.4  Score=37.14  Aligned_cols=106  Identities=18%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CeEEEEec----ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc-
Q 014463          221 MKFAIQGF----GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE-  295 (424)
Q Consensus       221 ~~vaIqGf----GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~-  295 (424)
                      ++|||.|.    +.+|..+++.|.+.|++|+.|-=..+.+                  ..+.-|+.-     .++-+.| 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i------------------~G~~~y~sl-----~dlp~vDl   61 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV------------------LGKTIINER-----PVIEGVDT   61 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE------------------TTEECBCSC-----CCCTTCCE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC------------------CCeeccCCh-----HHCCCCCE
Confidence            68999996    7899999999999999988663221111                  011223221     2222211 


Q ss_pred             cceeeeccc-cCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcc
Q 014463          296 CDVLVPCAL-GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVT  356 (424)
Q Consensus       296 ~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi  356 (424)
                      ++|++|+.. ...+.+--...+++ ++.  .-+...+++.++.++.||.++|    |+=||.
T Consensus        62 avi~~p~~~v~~~v~e~~~~g~k~-v~~--~~G~~~~e~~~~a~~~Girvv~----nC~gv~  116 (122)
T 3ff4_A           62 VTLYINPQNQLSEYNYILSLKPKR-VIF--NPGTENEELEEILSENGIEPVI----GCTLVM  116 (122)
T ss_dssp             EEECSCHHHHGGGHHHHHHHCCSE-EEE--CTTCCCHHHHHHHHHTTCEEEE----SCHHHH
T ss_pred             EEEEeCHHHHHHHHHHHHhcCCCE-EEE--CCCCChHHHHHHHHHcCCeEEC----CcCeEE
Confidence            344455532 33333222223443 333  2344678999999999999885    554543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.04  E-value=1  Score=46.71  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~-l~D~~   37 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVL-LYDIS   37 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEE-EECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEE-EEECC
Confidence            589999999999999999999999987 66753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=87.99  E-value=0.62  Score=48.14  Aligned_cols=32  Identities=25%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+.+|..|.+.|..|+ +.|.+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~-l~D~~   86 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETF-LVVRN   86 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEE-EEECc
Confidence            689999999999999999999999988 67765

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=87.92  E-value=0.58  Score=46.09  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+.+++.|.+.|++|+. .+.
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl-~~r   77 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVI-AAK   77 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEE-EES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEE-EEC
Confidence            489999999995 89999999999999999984 454

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=87.91  E-value=0.81  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCC-CEEEEEEcC
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHG-GKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD~  252 (424)
                      .||+|.| +|.+|+.+++.|.++. ..++++++.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~   38 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR   38 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc
Confidence            6899999 8999999999998765 589998884

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=87.80  E-value=0.34  Score=45.84  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=28.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++++++.|.|. |.+|+.+++.|.+.|++|+ +.|.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~r   60 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVA-LAGR   60 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            367889999885 8999999999999999988 5554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=87.75  E-value=0.41  Score=46.70  Aligned_cols=91  Identities=22%  Similarity=0.297  Sum_probs=55.8

Q ss_pred             CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D  297 (424)
                      -.||+|.|+|++|+..++.|.+. +.++++++|.+..-      .+.              + +.... +.++++ .++|
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~------~~~--------------~-gv~~~~d~~~ll-~~~D   60 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL------DTK--------------T-PVFDVADVDKHA-DDVD   60 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC------SSS--------------S-CEEEGGGGGGTT-TTCS
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH------hhc--------------C-CCceeCCHHHHh-cCCC
Confidence            46899999999999999988765 68999999975311      110              1 11111 235566 6899


Q ss_pred             eeeeccccCccccccccc-c--cceEEEecCCCCCCHHH
Q 014463          298 VLVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDPEA  333 (424)
Q Consensus       298 IliPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~eA  333 (424)
                      +++-|.-... +.+++.. +  +..+|+|-.=....+++
T Consensus        61 vViiatp~~~-h~~~~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           61 VLFLCMGSAT-DIPEQAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             EEEECSCTTT-HHHHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             EEEEcCCcHH-HHHHHHHHHHCCCEEEECCCCcCCHHHH
Confidence            9998864432 3333332 2  34677765322223444

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=87.74  E-value=0.4  Score=46.04  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH----CCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE----HGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~----~GakVVaVsD~~  253 (424)
                      +-.||+|+|+|.+|..-++.|.+    .+.++++|+|.+
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~   44 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR   44 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECch
Confidence            34689999999999988887753    578999999974

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=87.72  E-value=0.73  Score=43.50  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+.+|+.|.+.|++|+ +.|.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~r   65 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVI-LHGV   65 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence            588999999985 8999999999999999988 5554

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.56  E-value=0.26  Score=46.42  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            456899999999999999999999997444588875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.45  E-value=0.6  Score=46.29  Aligned_cols=35  Identities=37%  Similarity=0.384  Sum_probs=31.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|.|.|.|.+|+.+++.+...|++|+ +.|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~-v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeCC
Confidence            677999999999999999999999999877 67764

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=87.37  E-value=0.76  Score=46.32  Aligned_cols=110  Identities=10%  Similarity=0.141  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecCh---HHHHHHHHHHHCC-CEEEE-EEcCCCceeCCCCCCHHHHHHHHHhcCCc--ccCCCCeeecCCc
Q 014463          218 ISNMKFAIQGFGN---VGSWAAKFFHEHG-GKVVA-VSDITGAIKNPNGIDVPALLKYKKSNKSL--NDFQGGNAMDLND  290 (424)
Q Consensus       218 l~g~~vaIqGfGn---VG~~~a~~L~~~G-akVVa-VsD~~G~i~~~~GlDi~~L~~~~~~~g~v--~~~~~~~~i~~~~  290 (424)
                      ++-.||+|+|+|.   +|..-+..+...+ +++++ |+|.+          .+...+..++.+--  .-|     -+.++
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~----------~~~a~~~a~~~g~~~~~~~-----~~~~~   99 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSST----------PEKAEASGRELGLDPSRVY-----SDFKE   99 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSS----------HHHHHHHHHHHTCCGGGBC-----SCHHH
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCC----------HHHHHHHHHHcCCCccccc-----CCHHH
Confidence            4567999999999   9988777776654 78986 88873          45555555543211  112     12356


Q ss_pred             cccc------ccceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEec
Q 014463          291 LLVH------ECDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVILP  346 (424)
Q Consensus       291 ll~~------~~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~viP  346 (424)
                      +++.      ++|+++-|. .+..+.+.+.. +  ..-++||=   |+  | .+++++   .+++|+.+.-
T Consensus       100 ll~~~~~~~~~vD~V~I~t-p~~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~v  166 (417)
T 3v5n_A          100 MAIREAKLKNGIEAVAIVT-PNHVHYAAAKEFLKRGIHVICDK---PLTSTLADAKKLKKAADESDALFVL  166 (417)
T ss_dssp             HHHHHHHCTTCCSEEEECS-CTTSHHHHHHHHHTTTCEEEEES---SSCSSHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHhcccccCCCCcEEEECC-CcHHHHHHHHHHHhCCCeEEEEC---CCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            7654      589988663 34444443332 2  44588884   43  2 355543   4567776543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=87.37  E-value=0.51  Score=49.35  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             CCC-CeEEEEecChHHHHHHHHHHHC------CCEEEEEEcC
Q 014463          218 ISN-MKFAIQGFGNVGSWAAKFFHEH------GGKVVAVSDI  252 (424)
Q Consensus       218 l~g-~~vaIqGfGnVG~~~a~~L~~~------GakVVaVsD~  252 (424)
                      ++| ++|+|+|+|++|...|+.|.+.      |.+|+ |.+.
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~Vi-Vg~r   91 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-IGLR   91 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEE-EEEC
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEE-EEeC
Confidence            688 9999999999999999999988      99877 4443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.17  E-value=0.62  Score=47.83  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++|++|.|.|.|.||...++.|.+.|++|+-|+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~   42 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNA   42 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEc
Confidence            46889999999999999999999999999998444

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=86.96  E-value=1.3  Score=43.26  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=33.1

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++..+....|.+|+|+|.|.||..+++++...|++|+++..+
T Consensus       172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~  213 (357)
T 2cf5_A          172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS  213 (357)
T ss_dssp             HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            333344337899999999999999999999999999865433

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=86.95  E-value=0.6  Score=45.12  Aligned_cols=105  Identities=15%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-ccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~  296 (424)
                      +-.||+|+|+|++|+..++.|.+ .+.++++|+|.+.     +     .+.+    .+ +. |   .  +-+++++ .++
T Consensus         8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~-----~-----~~~~----~g-~~-~---~--~~~~l~~~~~~   66 (304)
T 3bio_A            8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNP-----A-----EVPF----EL-QP-F---R--VVSDIEQLESV   66 (304)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CC-TT-S---C--EESSGGGSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCH-----H-----HHHH----cC-CC-c---C--CHHHHHhCCCC
Confidence            34699999999999999998876 5789999999742     1     1111    11 11 1   1  1133333 479


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCC-CCCCHHHH---HHHHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAAN-HPTDPEAD---EILSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN-~p~t~eA~---~iL~~rGI~vi  345 (424)
                      |+++-|.- ...+.+.+..   -+..+|+|--- .+...+++   +..++.|+.++
T Consensus        67 DvViiatp-~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~  121 (304)
T 3bio_A           67 DVALVCSP-SREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAV  121 (304)
T ss_dssp             CEEEECSC-HHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred             CEEEECCC-chhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence            99998853 3334444332   25568887210 11122333   34567776543

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=86.75  E-value=0.78  Score=46.43  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCC--CEEEEE-EcCCCceeCCCCCCHHHHHHHHHhcCC--c--cc----------CCC
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHG--GKVVAV-SDITGAIKNPNGIDVPALLKYKKSNKS--L--ND----------FQG  282 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~G--akVVaV-sD~~G~i~~~~GlDi~~L~~~~~~~g~--v--~~----------~~~  282 (424)
                      ++|+|.|+ |.||+.+++.+.+..  .+++++ ++.          +++.+.+..++.+.  +  .+          +++
T Consensus         5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~----------ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~   74 (388)
T 1r0k_A            5 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR----------NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAG   74 (388)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS----------CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTT
T ss_pred             eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCC----------CHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhcc
Confidence            68999999 999999999998753  789988 554          35555544443221  0  00          000


Q ss_pred             --CeeecC----CcccccccceeeeccccCccccc-ccccccceEEEecCCCCCCH----HHHHHHHhCCceEecc
Q 014463          283 --GNAMDL----NDLLVHECDVLVPCALGGVLNKE-NAADVKAKFIIEAANHPTDP----EADEILSKKGVVILPD  347 (424)
Q Consensus       283 --~~~i~~----~~ll~~~~DIliPaA~~~~It~~-na~~i~akiIvEgAN~p~t~----eA~~iL~~rGI~viPD  347 (424)
                        .+.+..    .++.+.++|+++.|-.+. ..-+ ....+++.-=+=-||-.+.-    +-.+..+++|+.++|-
T Consensus        75 ~~~~v~~g~~~~~el~~~~iDvVV~ai~G~-aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~liPV  149 (388)
T 1r0k_A           75 SSVEAAAGADALVEAAMMGADWTMAAIIGC-AGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPV  149 (388)
T ss_dssp             CSSEEEESHHHHHHHHTSCCSEEEECCCSG-GGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred             CCcEEEeCccHHHHHHcCCCCEEEEeCCCH-HHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence              111111    134555589999996441 1111 12223332222235665322    2234456778888886

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.55  E-value=0.76  Score=43.93  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|++|..+|..|.+.|..|+ +.|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~-~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVV-LVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence            589999999999999999999999987 66764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.32  E-value=0.46  Score=44.77  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|.|.|.|.+|+.+++.|...|..-+.|.|.+
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999998767788865

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=86.27  E-value=1.2  Score=42.30  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv-~~~~~   40 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVV-AVELL   40 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECC
Confidence            689999999995 7899999999999999988 67763

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.24  E-value=1  Score=39.30  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ++++|.|.|. |.+|+++++.|.++|.+|++++-
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r   35 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence            3478999996 99999999999999999996643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.20  E-value=1.6  Score=42.23  Aligned_cols=99  Identities=17%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe------eecCCc
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN------AMDLND  290 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~------~i~~~~  290 (424)
                      ....++|+|.|.|++|..+|..|.+.|..|+.+  .+          .+.+.+..+++-.+. .++..      ..++.+
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~--~~----------~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~   82 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI--AR----------PQHVQAIEATGLRLE-TQSFDEQVKVSASSDPS   82 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE--CC----------HHHHHHHHHHCEEEE-CSSCEEEECCEEESCGG
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE--Ec----------HhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHH
Confidence            355689999999999999999999999998755  32          123333333321221 22221      112222


Q ss_pred             ccccccceeeeccccCccccccccc----cc-ceEEEecCCCCCC
Q 014463          291 LLVHECDVLVPCALGGVLNKENAAD----VK-AKFIIEAANHPTD  330 (424)
Q Consensus       291 ll~~~~DIliPaA~~~~It~~na~~----i~-akiIvEgAN~p~t  330 (424)
                      .. .++|++|-|--...+ ++.++.    ++ -.+|+-..|+--.
T Consensus        83 ~~-~~~D~vilavk~~~~-~~~l~~l~~~l~~~~~iv~~~nGi~~  125 (318)
T 3hwr_A           83 AV-QGADLVLFCVKSTDT-QSAALAMKPALAKSALVLSLQNGVEN  125 (318)
T ss_dssp             GG-TTCSEEEECCCGGGH-HHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred             Hc-CCCCEEEEEcccccH-HHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence            22 479999988654432 333332    22 2477777887543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=86.12  E-value=0.96  Score=42.86  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..+|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-~~~r   39 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPV-VFAR   39 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEEC
Confidence            46799999999995 7899999999999999998 5554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=86.09  E-value=0.35  Score=49.76  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++|+|.|+|.||+.+|+.|.+.|..|+ |.|.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~-vId~d   35 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDIT-IVDKD   35 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEE-EEESC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEE-EEECC
Confidence            4789999999999999999999999988 66763

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=86.01  E-value=0.85  Score=42.57  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~r~   32 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQ-GWLRV   32 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEE-EEEcC
Confidence            479999999999999999999999887 45654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=85.99  E-value=3.2  Score=40.03  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHH--CCCEEEEEEc
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHE--HGGKVVAVSD  251 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakVVaVsD  251 (424)
                      .++++++|.|.| .|-+|+++++.|.+  .|++|+++.-
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            457899999997 59999999999999  9999996643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.77  E-value=0.7  Score=42.85  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-C-hHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-G-NVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-G-nVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++++++.|.|. | .+|+++++.|.++|++|+ +.|.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~-~~~r   55 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVV-ISDY   55 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEE-EecC
Confidence            378999999998 8 599999999999999988 4554

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=85.73  E-value=0.8  Score=43.42  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~   44 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVL-TTARA   44 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEE-EEECC
Confidence            689999999985 7899999999999999998 56653

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.70  E-value=0.92  Score=42.37  Aligned_cols=54  Identities=24%  Similarity=0.202  Sum_probs=32.3

Q ss_pred             hhHHHHHHHHHHHHH-HhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          198 ATGLGVFFATEALLA-EHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +|..|+-.+.+.+.- ....+++|+++.|.|. |.+|+++|+.|.++|++|+.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r   61 (271)
T 4iin_A            6 HHSSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR   61 (271)
T ss_dssp             ------------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            344444444444433 4456799999999985 89999999999999999985543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=85.61  E-value=0.86  Score=44.16  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|..+|..|+++|.+|+ |.|.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~-v~Er~   33 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVT-IYERN   33 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEE-EEecC
Confidence            689999999999999999999999987 87754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=85.45  E-value=1.9  Score=41.78  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=29.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -.|.+|.|.|.|.||..+++++...|++|+++.
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~  207 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFA  207 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEe
Confidence            368899999999999999999999999999653

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=85.25  E-value=0.74  Score=43.68  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-i~~~~   42 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVI-LNDIR   42 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-ECCSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            689999999885 8899999999999999988 77763

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=84.99  E-value=1.1  Score=42.08  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   43 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVM-IVGR   43 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            4688999999994 8999999999999999988 5555

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.88  E-value=1.3  Score=40.07  Aligned_cols=34  Identities=32%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~   37 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV   37 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            3578999999995 999999999999999998854

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=84.83  E-value=0.95  Score=44.71  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-------CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-------GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-------akVVaVsD~~  253 (424)
                      ++|+|+|.|++|+.+|..|.+.|       ..|+ +.|.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~   60 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVR-MWIRD   60 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEE-EECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEE-EEECC
Confidence            47999999999999999999888       7876 66654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=84.81  E-value=1.1  Score=41.46  Aligned_cols=36  Identities=25%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.+.|++|+ +.|.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~r   39 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVF-AGRR   39 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence            3578999999995 8899999999999999988 5555

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=84.80  E-value=1.2  Score=40.80  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.+.|++|+ +.|.
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~-~~~r   41 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVV-VADI   41 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEcC
Confidence            4578999999995 9999999999999999988 4554

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=84.75  E-value=1.1  Score=40.59  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+.+.
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r   38 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSP   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            36789999998 5999999999999999999966454

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=84.66  E-value=0.9  Score=42.88  Aligned_cols=71  Identities=25%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Cc---cc---
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-ND---LL---  292 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~---ll---  292 (424)
                      |+|.|.| .+.+|+.+|+.|.+.|++|+ ++|.+          .+.+.+..++.+.+..+. .. +++ ++   ++   
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~-~~~~~----------~~~~~~~~~~~~~~~~~~-~D-v~~~~~v~~~v~~~   69 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVC-FIDID----------EKRSADFAKERPNLFYFH-GD-VADPLTLKKFVEYA   69 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHTTCTTEEEEE-CC-TTSHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHhcCCEEEEE-ec-CCCHHHHHHHHHHH
Confidence            7889998 58899999999999999998 67753          455555555443332221 11 121 11   11   


Q ss_pred             -c--cccceeeeccc
Q 014463          293 -V--HECDVLVPCAL  304 (424)
Q Consensus       293 -~--~~~DIliPaA~  304 (424)
                       +  -..|+||-+|.
T Consensus        70 ~~~~g~iDiLVNNAG   84 (247)
T 3ged_A           70 MEKLQRIDVLVNNAC   84 (247)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence             1  36899999884

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=84.45  E-value=1.4  Score=40.84  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+.+.+.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            588999999995 889999999999999999966555

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=84.44  E-value=0.97  Score=41.96  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|+|+|.|++|+.+++.|.+.|.+|+. .|..        -+.+.+.+..+. +       .. -+.++++ .+||++|
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~-~~~~--------~~~~~~~~~~~~-g-------~~-~~~~~~~-~~aDvvi   61 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVT-SLEG--------RSPSTIERARTV-G-------VT-ETSEEDV-YSCPVVI   61 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE-CCTT--------CCHHHHHHHHHH-T-------CE-ECCHHHH-HTSSEEE
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEE-eCCc--------cCHHHHHHHHHC-C-------Cc-CCHHHHH-hcCCEEE
Confidence            4799999999999999999999998874 4441        122233333322 1       11 2233433 3799999


Q ss_pred             eccccCccccc---ccccccceEEEecCCCCC-C-HHHHHHHHhCC
Q 014463          301 PCALGGVLNKE---NAADVKAKFIIEAANHPT-D-PEADEILSKKG  341 (424)
Q Consensus       301 PaA~~~~It~~---na~~i~akiIvEgAN~p~-t-~eA~~iL~~rG  341 (424)
                      -|.-.....+.   -.+.++. +|+.-++... + .+..+.+.++|
T Consensus        62 ~~v~~~~~~~~~~~~~~~~~~-~vi~~s~~~~~~~~~l~~~~~~~g  106 (264)
T 1i36_A           62 SAVTPGVALGAARRAGRHVRG-IYVDINNISPETVRMASSLIEKGG  106 (264)
T ss_dssp             ECSCGGGHHHHHHHHHTTCCS-EEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             EECCCHHHHHHHHHHHHhcCc-EEEEccCCCHHHHHHHHHHHhhCC
Confidence            88654432221   1222344 8887754432 1 22334455555

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=84.43  E-value=2.2  Score=40.81  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=29.9

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +++++|.|.| .|-+|+++++.|.+.|.+|+++.-
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   57 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDN   57 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4678999999 599999999999999999997654

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=84.37  E-value=1.4  Score=41.23  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          217 SISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       217 ~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +++|++|.|.|.                 |.+|..+|+.|.++|++|+-++.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~   56 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG   56 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEEC
Confidence            478999999998                 79999999999999999986644

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=84.33  E-value=1.8  Score=38.15  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=28.5

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  249 (424)
                      -.|++|.|.| .|.+|..+++++...|++|+++
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~   69 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTT   69 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEE
Confidence            4688999999 6999999999999999998854

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=84.33  E-value=0.97  Score=42.89  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=27.6

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      +++++|.|.|. |-+|+++++.|.+.|++|+++
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~   33 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGA   33 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            35789999996 999999999999999999855

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=84.32  E-value=0.86  Score=42.10  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             HhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCC
Q 014463          213 EHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDIT  253 (424)
Q Consensus       213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~  253 (424)
                      .+|.+ +..+|+|.|.|++|+.+++.+  .. |.++||+.|.+
T Consensus        74 ~lg~~-~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~d  114 (211)
T 2dt5_A           74 ILGLN-RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVD  114 (211)
T ss_dssp             HHTTT-SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESC
T ss_pred             HhCcC-CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCC
Confidence            45654 347899999999999999863  34 89999999974

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=84.27  E-value=1.1  Score=43.62  Aligned_cols=34  Identities=29%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCC-------CEEEEEEcCCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHG-------GKVVAVSDITG  254 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~G-------akVVaVsD~~G  254 (424)
                      .++|+|+|.|++|+.+|..|.+.|       ..|+ +.|.+.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~   48 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEE   48 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEE-EEEcCh
Confidence            468999999999999999999888       7766 666643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=84.14  E-value=1.1  Score=42.94  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .++++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~   51 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVID   51 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEE
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            3488999999996 9999999999999999999654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=84.11  E-value=1.5  Score=40.53  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   39 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVL-VAR   39 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcC
Confidence            4578999999985 99999999999999999984 454

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=84.49  E-value=0.2  Score=45.61  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~-~~~r~   51 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVV-FGSRN   51 (201)
Confidence            677899999999999999999999998876 55553

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=84.05  E-value=0.51  Score=46.44  Aligned_cols=33  Identities=33%  Similarity=0.311  Sum_probs=29.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~-l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVK-LYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEE-EECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEE-EEECC
Confidence            4589999999999999999999999998 77763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=84.03  E-value=3  Score=40.94  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=28.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  252 (424)
                      -.+++|+|+|.|+||+.+|..|...|.  .++ +.|.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~-l~D~   42 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIG-IVDI   42 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEeC
Confidence            356799999999999999999987775  555 6676

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.96  E-value=0.92  Score=42.12  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ++|.|.|.|.+|+++++.|.++|.+|++++-
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r   36 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSR   36 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEES
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEc
Confidence            6899999999999999999999999997654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=83.91  E-value=1.4  Score=44.22  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~  253 (424)
                      ++|+|.|.|.+|+.+++.|.+.|.   +|+ ++|.+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~-v~~r~   36 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHIT-LASRT   36 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEE-EEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEE-EEECC
Confidence            489999999999999999999884   554 77764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=83.90  E-value=1.3  Score=42.01  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +++++|.|.|. |-+|+++++.|.+.|++|+++..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r   43 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            67899999996 99999999999999999986543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=83.84  E-value=1  Score=43.93  Aligned_cols=89  Identities=17%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHH--CCCEEEEEEcCCCceeCCCCCCHHH-HHHHHHhcCCcccCCCCeeecCCcccc---
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPA-LLKYKKSNKSLNDFQGGNAMDLNDLLV---  293 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~i~~~~GlDi~~-L~~~~~~~g~v~~~~~~~~i~~~~ll~---  293 (424)
                      ..+|+|+|+|++|+..++.|.+  .+.++++|+|.+-          +. ..+..++.+. ..+    ..+.+++++   
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~----------~~~~~~~a~~~g~-~~~----~~~~e~ll~~~~   68 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA----------ASDGLARAQRMGV-TTT----YAGVEGLIKLPE   68 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT----------TCHHHHHHHHTTC-CEE----SSHHHHHHHSGG
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCCh----------hhhHHHHHHHcCC-Ccc----cCCHHHHHhccC
Confidence            3689999999999999999855  5789999999741          11 2222222221 000    011245554   


Q ss_pred             -cccceeeeccccCcccccccccc-----cceEEEec
Q 014463          294 -HECDVLVPCALGGVLNKENAADV-----KAKFIIEA  324 (424)
Q Consensus       294 -~~~DIliPaA~~~~It~~na~~i-----~akiIvEg  324 (424)
                       .++|+.+-|.- ...+.+.+...     +..+|+|-
T Consensus        69 ~~~iDvV~~atp-~~~h~~~a~~al~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           69 FADIDFVFDATS-ASAHVQNEALLRQAKPGIRLIDLT  104 (312)
T ss_dssp             GGGEEEEEECSC-HHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCcEEEECCC-hHHHHHHHHHHHHhCCCCEEEEcC
Confidence             36899998865 45555554442     44566644

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=83.74  E-value=2.2  Score=39.11  Aligned_cols=30  Identities=17%  Similarity=0.052  Sum_probs=25.4

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463          220 NMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       220 g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  249 (424)
                      ++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   31 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCH   31 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence            46788888 4899999999999999999843

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=83.59  E-value=1.1  Score=40.11  Aligned_cols=94  Identities=19%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      ++|+|.| .|++|+.+++.|.+.|.+|+ +.|.+          .+.+.+..++.+....-.....-+.++.+ .+||++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~V   68 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSRR----------EEKAEAKAAEYRRIAGDASITGMKNEDAA-EACDIA   68 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEESS----------HHHHHHHHHHHHHHHSSCCEEEEEHHHHH-HHCSEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhccccccCCCChhhHHHHH-hcCCEE
Confidence            4799999 99999999999999999987 45653          22333322221100000001111112223 379999


Q ss_pred             eeccccCccccccccc----ccceEEEecCCC
Q 014463          300 VPCALGGVLNKENAAD----VKAKFIIEAANH  327 (424)
Q Consensus       300 iPaA~~~~It~~na~~----i~akiIvEgAN~  327 (424)
                      |-|.-...+ .+.+..    ++-++|+..+|+
T Consensus        69 i~~~~~~~~-~~~~~~l~~~~~~~~vi~~~~g   99 (212)
T 1jay_A           69 VLTIPWEHA-IDTARDLKNILREKIVVSPLVP   99 (212)
T ss_dssp             EECSCHHHH-HHHHHHTHHHHTTSEEEECCCC
T ss_pred             EEeCChhhH-HHHHHHHHHHcCCCEEEEcCCC
Confidence            998754432 222222    234688888885

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=83.59  E-value=1.8  Score=41.37  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -.|.+|.|+|.|.||..+++++...|++|++++
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~  173 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS  173 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            468899999999999999999999999999775

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=83.52  E-value=2.5  Score=41.79  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=27.1

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCC-CEEEEEEc
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHG-GKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~G-akVVaVsD  251 (424)
                      .||+|.| +|.+|+.+++.|.++. ..|+++++
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~   41 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA   41 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            5899999 9999999999997764 68999975

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=83.50  E-value=3.2  Score=36.35  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=24.8

Q ss_pred             eEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463          222 KFAIQG-FGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       222 ~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ++.|.| .|-+|+++++.|. +|++|+.++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~   33 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAG   33 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEE
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEe
Confidence            899998 5999999999999 999998554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=83.39  E-value=2  Score=41.58  Aligned_cols=31  Identities=10%  Similarity=0.325  Sum_probs=28.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC--CCEEEEE
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH--GGKVVAV  249 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~--GakVVaV  249 (424)
                      .|.+|+|+|.|.||..+++++...  |++|+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~  202 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGI  202 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEE
Confidence            889999999999999999999988  9998854

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=83.37  E-value=0.49  Score=44.53  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=28.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      ..-++|+|+|.|++|..+++.|.+.|.+|+++
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~   35 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVL   35 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHHTTCEEEEC
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence            34479999999999999999999999998854

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=83.37  E-value=1.2  Score=41.77  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=28.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +||.|.|. |-+|+++++.|.++|.+|++++-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            58999996 99999999999999999998763

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=83.34  E-value=1.4  Score=41.21  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++|+++.|.| .|.+|+++|+.|.++|++|+ ++|.+
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~-~~~r~   43 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIA-ICDRC   43 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCC
Confidence            48899999999 48999999999999999988 55553

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=83.34  E-value=0.66  Score=47.09  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +++++|.|.|.|..|..+|++|+++|++|+ ++|++.
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~-~~D~~~   38 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMDTRM   38 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCE-EEESSS
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEE-EEECCC
Confidence            678999999999999999999999999988 688753

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=83.31  E-value=1.5  Score=40.51  Aligned_cols=36  Identities=17%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~-~~~r   39 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVL-GLDL   39 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3578999999995 8999999999999999998 4554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=83.29  E-value=3.7  Score=39.48  Aligned_cols=32  Identities=38%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      ++|+|+|.|.||..++..|...|.  .|+ +.|.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~-L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELV-LVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence            489999999999999999999887  766 66653

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=83.27  E-value=1.5  Score=41.00  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+++++.|.++|++|+ +.|.+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r~   44 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVV-LADLP   44 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEECT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEcCC
Confidence            4588999999995 8999999999999999988 55653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=83.27  E-value=1.4  Score=40.62  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|+++.|.|. |.+|+++++.|.+.|++|+ +.|.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   44 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVI-LLGR   44 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence            488999999995 8999999999999999988 5554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=83.25  E-value=1.6  Score=40.26  Aligned_cols=36  Identities=17%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEec-Ch--HHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GN--VGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-Gn--VG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.  +|+.+|+.|.++|++|+. .+.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~-~~r   41 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIF-TYA   41 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEE-EES
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEE-ecC
Confidence            4688999999996 66  999999999999999984 444

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=83.25  E-value=1.6  Score=39.85  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+ |.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~-~r   43 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILI-DR   43 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence            57899999998 4999999999999999999854 44

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=83.25  E-value=1.8  Score=39.29  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+.+ +.
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~-~r   39 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV-SR   39 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence            3578999999996 999999999999999999854 44

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.21  E-value=1.4  Score=41.85  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~-~~~r   79 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIA-IAYL   79 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3589999999995 8999999999999999988 5554

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=83.19  E-value=1.1  Score=41.64  Aligned_cols=36  Identities=14%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEe---cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQG---FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqG---fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++++.|.|   .|.+|+++++.|.+.|++|+ +.|.+
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~-~~~r~   42 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLV-LTGFD   42 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEE-EEECS
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEE-EEecC
Confidence            47899999999   58999999999999999988 45543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=83.18  E-value=2.5  Score=41.31  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~  210 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS  210 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            67899999999999999999999999988654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=83.17  E-value=1  Score=44.52  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~-~~dr   39 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVF-GYNR   39 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3689999999999999999999999887 5565

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=83.16  E-value=1.6  Score=39.98  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.+ |.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~-~r   45 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIA-DL   45 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence            478999999984 999999999999999999854 44

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=83.06  E-value=0.95  Score=44.43  Aligned_cols=31  Identities=23%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      |.+|.|+|.|.||..+++++...|++|+++.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~  211 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMAN  211 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            8999999999999999999999999998553

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=83.05  E-value=0.93  Score=47.26  Aligned_cols=55  Identities=27%  Similarity=0.340  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHHHHHHHhC---------CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          198 ATGLGVFFATEALLAEHG---------KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g---------~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.+.|...+++.+++..+         .+++++++.|.|.|.+|+.++..|.+.|++|+ |++.+
T Consensus       333 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~-i~~R~  396 (523)
T 2o7s_A          333 TDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVV-IANRT  396 (523)
T ss_dssp             CHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CE-EEESS
T ss_pred             CCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            345577777776643211         35788999999999999999999999999876 66664

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=83.04  E-value=5  Score=37.98  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++|.|.| .|-+|+++++.|.+.|++|+++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~   35 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIA   35 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEE
Confidence            467999999 5999999999999999999854

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=83.04  E-value=1.3  Score=40.19  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+ +.
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~-~r   39 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIIT-GT   39 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence            457899999998 5999999999999999999854 44

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=83.03  E-value=1.5  Score=41.31  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~r   64 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVA-VAAR   64 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            589999999995 8999999999999999988 4554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=82.97  E-value=3.5  Score=40.65  Aligned_cols=55  Identities=22%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC---------ceeCCCCCCHHHHHHHHHh
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG---------AIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G---------~i~~~~GlDi~~L~~~~~~  273 (424)
                      +.|++|.|.|.|..|+.+++.+.+.|.+|+.+ |.+.         ..+..+-.|.+.+.+..++
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~-d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~   75 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVL-DPTKNSPCAQVADIEIVASYDDLKAIQHLAEI   75 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEE-ESSTTCTTTTTCSEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE-eCCCCCchHHhCCceEecCcCCHHHHHHHHHh
Confidence            78999999999999999999999999999965 5431         1233344566666665544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.93  E-value=1.4  Score=38.89  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=27.2

Q ss_pred             CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463          221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ++|.|.| .|.+|+++++.|.++|.+|++++-
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R   32 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVR   32 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEc
Confidence            4799999 599999999999999999996643

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=82.87  E-value=1.6  Score=40.56  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ ++|.
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~r   40 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVA-FCAR   40 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence            4688999999984 8999999999999999988 5555

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=82.86  E-value=3  Score=40.10  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..|.+|.|+|.|.||..+++++...|++++.++|.+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~  194 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS  194 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEech
Confidence            578999999999999999999999999876566653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=82.82  E-value=1.4  Score=39.12  Aligned_cols=30  Identities=37%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ++|.|.|. |.+|+++++.|.+.|.+|++++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~   31 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVV   31 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            47999996 9999999999999999999664

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.76  E-value=1.5  Score=41.73  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|.+   .+|+.+|+.|.+.|++|+ ++|.+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~-~~~r~   65 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVA-LTYLS   65 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEE-EEeCC
Confidence            34889999999975   899999999999999988 55653

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=82.76  E-value=1.6  Score=40.28  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   44 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAI-ADL   44 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence            478999999994 89999999999999999984 454

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=82.72  E-value=1  Score=43.17  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +.++++|.|.|. |.+|+++++.|.+.|++|+++.-
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   51 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDL   51 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeC
Confidence            478899999996 99999999999999999996643

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=82.72  E-value=1.7  Score=40.06  Aligned_cols=36  Identities=14%  Similarity=0.196  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~-~~r   51 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTI-CAR   51 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EcC
Confidence            3589999999995 89999999999999999884 454

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=82.68  E-value=1.3  Score=40.45  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~-~~~r   46 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVV-LLGR   46 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEec
Confidence            488999999995 9999999999999999988 4554

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=82.64  E-value=1.5  Score=36.49  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      +.++++|.|.|..|..+++.|.+. |.+++|+.|.+
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            357899999999999999999764 89999999864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=82.64  E-value=1.6  Score=40.52  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   43 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLV-LAAR   43 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEE-EEeC
Confidence            3588999999995 7899999999999999988 5554

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=82.61  E-value=1.8  Score=39.59  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=29.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~   37 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAAC   37 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            357899999998 4999999999999999999854

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=82.46  E-value=1.7  Score=40.29  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r   39 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIA-LLDM   39 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3578999999984 8999999999999999988 4454

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=82.44  E-value=1.1  Score=41.93  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +.+++|.|.|. |.+|+++++.|.+.|.+|++++
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   38 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLD   38 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            56789999997 9999999999999999999664

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.42  E-value=3.3  Score=40.71  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=29.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .|.+|.|.|.|.||..+++++...|++|+++.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~  225 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT  225 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            67899999999999999999999999988654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.36  E-value=1.7  Score=40.54  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+++|+.|.++|++|+ +.|.+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADII-AVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEE-EEecc
Confidence            4589999999995 8999999999999999998 55543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=82.36  E-value=4.4  Score=39.41  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh-cCCcccCCCCeeecCCccccccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKS-NKSLNDFQGGNAMDLNDLLVHEC  296 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~-~g~v~~~~~~~~i~~~~ll~~~~  296 (424)
                      ..++++|+|.|..|+..++.|.+ .+.+-|.|.|.+         ..+++.+...+ .+ +.    ....+.++.+ .++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------~a~~la~~l~~~~g-~~----~~~~~~~eav-~~a  184 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------ASPEILERIGRRCG-VP----ARMAAPADIA-AQA  184 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------CCHHHHHHHHHHHT-SC----EEECCHHHHH-HHC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------HHHHHHHHHHHhcC-Ce----EEEeCHHHHH-hhC
Confidence            56799999999999999998876 455555577765         23455443322 11 10    1112223333 479


Q ss_pred             ceeeeccccC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463          297 DVLVPCALGG--VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY  349 (424)
Q Consensus       297 DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l  349 (424)
                      ||++-|.-..  .+..+-.+ -.+-++.=|+..|-..|.+..+..++-.++-|..
T Consensus       185 DIVi~aT~s~~pvl~~~~l~-~G~~V~~vGs~~p~~~El~~~~~~~a~~v~vD~~  238 (313)
T 3hdj_A          185 DIVVTATRSTTPLFAGQALR-AGAFVGAIGSSLPHTRELDDEALRRARAVVVEWR  238 (313)
T ss_dssp             SEEEECCCCSSCSSCGGGCC-TTCEEEECCCSSTTCCCCCHHHHHHCSEEEESCH
T ss_pred             CEEEEccCCCCcccCHHHcC-CCcEEEECCCCCCchhhcCHHHHhcCCEEEECCH
Confidence            9999876432  34432222 2566777788877555555444455544555543

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=82.30  E-value=12  Score=37.38  Aligned_cols=32  Identities=34%  Similarity=0.489  Sum_probs=26.2

Q ss_pred             CeEEEEecChHHHHHHHHH----HHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFF----HEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L----~~~-GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.+.|.|    .+. ...||||-|.
T Consensus         3 ~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~   39 (359)
T 3ids_C            3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDM   39 (359)
T ss_dssp             EEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECS
T ss_pred             eEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecC
Confidence            4899999999999999984    332 4789999884

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.30  E-value=1.3  Score=41.28  Aligned_cols=37  Identities=14%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..+++|+++.|.|. |.+|+++++.|.+.|++|+ +.|.
T Consensus         5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~-~~~r   42 (267)
T 3t4x_A            5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVL-INGR   42 (267)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            35689999999985 8999999999999999988 5555

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=82.25  E-value=1  Score=44.74  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++|.|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            678999999999999999999999998767788865

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=82.12  E-value=0.94  Score=44.70  Aligned_cols=33  Identities=33%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      .||+|.|+|.+|+.+++.|.+ .+..+++|.|.+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~   35 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR   35 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESS
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            489999999999999999987 578999999864

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=81.98  E-value=1.9  Score=40.73  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=30.1

Q ss_pred             CCCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEE
Q 014463          216 KSISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       216 ~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaV  249 (424)
                      .+++|+++.|.|.   |.+|+++|+.|.++|++|+.+
T Consensus         4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~   40 (297)
T 1d7o_A            4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVG   40 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEe
Confidence            4588999999997   689999999999999999854

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=81.92  E-value=1.3  Score=41.12  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   38 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVV-ITGR   38 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999985 8999999999999999988 4555

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=81.89  E-value=1.4  Score=40.54  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++|+.|.++|++|+ +.|.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~-~~~r   41 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVI-GTAT   41 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            578999999985 8999999999999999998 4454

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=81.82  E-value=3  Score=40.19  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -.|.+|.|.|.|.||..+++++...|++|+++.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~  197 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVD  197 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            468899999999999999999999999999653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=81.78  E-value=2  Score=39.61  Aligned_cols=36  Identities=11%  Similarity=0.060  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   39 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLL-FSR   39 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence            3578999999994 89999999999999999884 454

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=81.77  E-value=1.5  Score=41.14  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             hCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          214 HGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       214 ~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++.++.++++.|.|. |.+|+++++.|.+.|++|+. .|.
T Consensus        10 m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~-~~r   48 (266)
T 3p19_A           10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLL-LAR   48 (266)
T ss_dssp             -----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEE-EES
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EEC
Confidence            345678899999995 89999999999999999984 444

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=81.76  E-value=2.3  Score=41.47  Aligned_cols=36  Identities=11%  Similarity=0.019  Sum_probs=32.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|.|+|. |.||..+++++...|+++|++++++
T Consensus       166 ~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~  202 (357)
T 1zsy_A          166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDR  202 (357)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            36889999997 9999999999998999999888764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=81.72  E-value=1.6  Score=39.86  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~   35 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGT   35 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            478899999984 899999999999999999854

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=81.70  E-value=1.1  Score=43.32  Aligned_cols=107  Identities=16%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHE  295 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~  295 (424)
                      ..+++|.|+|.+|+.+++.|.+.|. |+ +.|.+          .+.+. ..+. + +.-+. +.. ++.+.|    -.+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~-vid~~----------~~~~~-~~~~-~-~~~i~-gd~-~~~~~L~~a~i~~  177 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FV-LAEDE----------NVRKK-VLRS-G-ANFVH-GDP-TRVSDLEKANVRG  177 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EE-EESCG----------GGHHH-HHHT-T-CEEEE-SCT-TSHHHHHHTCSTT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EE-EEeCC----------hhhhh-HHhC-C-cEEEE-eCC-CCHHHHHhcChhh
Confidence            4589999999999999999999998 76 55653          23333 2221 1 11110 011 122222    236


Q ss_pred             cceeeeccccCcc---cccccccc--cceEEEecCCCCCCHHHHHHHHhCCce--Eecc
Q 014463          296 CDVLVPCALGGVL---NKENAADV--KAKFIIEAANHPTDPEADEILSKKGVV--ILPD  347 (424)
Q Consensus       296 ~DIliPaA~~~~I---t~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~--viPD  347 (424)
                      +|.++-+.-.+..   ....++++  +.++|+..-|    ++..+.|++.|+-  +.|.
T Consensus       178 a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~----~~~~~~l~~~G~d~vi~~~  232 (336)
T 1lnq_A          178 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGADQVISPF  232 (336)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHTTCTTSEEEEECSS----GGGHHHHHHTTCSEEECHH
T ss_pred             ccEEEEcCCccHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHcCCCEEEChh
Confidence            8888876543221   12233444  4578887643    4455778888874  4454

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=81.60  E-value=2.9  Score=40.85  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -.|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~  220 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTS  220 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            468899999999999999999999999999654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=81.59  E-value=1.2  Score=42.70  Aligned_cols=107  Identities=12%  Similarity=0.104  Sum_probs=59.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC--CCceeCCCCCCHHHHHHHHHhcCCcc-c--CCCCeeecCCccc--c
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI--TGAIKNPNGIDVPALLKYKKSNKSLN-D--FQGGNAMDLNDLL--V  293 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~--~G~i~~~~GlDi~~L~~~~~~~g~v~-~--~~~~~~i~~~~ll--~  293 (424)
                      ++|+|+|.|++|+.+|..|.+.|..|+ +.|.  +          .+.+....++...+. +  ++.....+++++-  -
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVR-IWGTEFD----------TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL   69 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEE-EECCGGG----------HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEEccCC----------HHHHHHHHHhCcCcccCccccceEEecHHhHHHHH
Confidence            479999999999999999999999887 5555  3          223333332211111 0  0000112211221  2


Q ss_pred             cccceeeeccccCcccc---ccccccc-ceEEEecCCCC------CCHHHHHHHHh
Q 014463          294 HECDVLVPCALGGVLNK---ENAADVK-AKFIIEAANHP------TDPEADEILSK  339 (424)
Q Consensus       294 ~~~DIliPaA~~~~It~---~na~~i~-akiIvEgAN~p------~t~eA~~iL~~  339 (424)
                      .+||++|-|.-...+.+   +-.+ ++ -++|+.-.|+-      ......+.+.+
T Consensus        70 ~~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           70 ENAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hcCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            37999998865443211   1222 33 35788888875      23444556655

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.57  E-value=2.8  Score=40.52  Aligned_cols=31  Identities=35%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV  249 (424)
                      .|.+|.|+|.|.+|..+++++...|++|+++
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~  194 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAV  194 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            5789999999999999999999999999854

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=81.52  E-value=1.3  Score=41.41  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ ++|.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi-~~~r   62 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVV-IADL   62 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999995 8999999999999999988 5555

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=81.50  E-value=1.4  Score=40.78  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.+.|++|+ +.+.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~-~~~r   61 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVV-LTAR   61 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEEC
Confidence            478999999984 9999999999999999988 4555

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=81.41  E-value=1.2  Score=42.74  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=28.7

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++|+|+| .|++|+.+++.|.+.|..|+ +.|.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~~   54 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRE   54 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence            45899999 99999999999999999877 56654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.41  E-value=1.5  Score=40.55  Aligned_cols=36  Identities=19%  Similarity=0.105  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~r   39 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVV-LIAR   39 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEE-EEES
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            3578999999995 8999999999999999998 4454

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=81.40  E-value=1.4  Score=41.06  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.| .|-+|+++++.|.++|++|+ +.|.
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   42 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVA-VAGR   42 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            58899999998 58999999999999999998 5555

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=81.31  E-value=2  Score=39.35  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.| .|.+|+++++.|.++|++|+.+ +.
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~-~r   44 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLL-DL   44 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence            357899999998 4999999999999999999854 44

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=81.26  E-value=1.8  Score=40.79  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++||++.|.|- +-+|+.+|+.|.+.|++|+ ++|.+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv-~~~~~   44 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVV-ALGLD   44 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            58999999995 7899999999999999998 67763

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=81.24  E-value=3.1  Score=40.02  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=29.8

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -.|.+|.|+|. |.+|..+++++...|++|+++.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~  181 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIA  181 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            46889999998 9999999999999999999654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=81.19  E-value=1.3  Score=45.73  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+|++|+|+|||+-|.+=|..|.+.|..|+ |.=.
T Consensus        35 lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~-Vglr   68 (491)
T 3ulk_A           35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDIS-YALR   68 (491)
T ss_dssp             GTTSEEEEESCSHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             HcCCEEEEeCCChHhHHHHhHHHhcCCcEE-EEeC
Confidence            899999999999999999999999999886 5533

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=81.16  E-value=1.7  Score=40.77  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~r   59 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTV-IASR   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence            378999999995 7899999999999999998 4554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=81.11  E-value=1.8  Score=41.73  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +++.
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv-~~~r   40 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVA-IADI   40 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEE-EEEC
Confidence            478999999995 8999999999999999988 5555

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=81.10  E-value=2.1  Score=40.63  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+.+|+.|.+.|++|+ +.|.+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADII-AIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEecc
Confidence            4589999999995 8899999999999999998 45543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=81.05  E-value=2.1  Score=39.25  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   39 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAI-ADL   39 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EcC
Confidence            47899999998 589999999999999999884 454

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=80.90  E-value=1.5  Score=42.56  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G  254 (424)
                      ++-.||+|+|+|++|+ ..++.|.+ .+.+|+||+|.+.
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~   61 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG   61 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh
Confidence            5668999999999998 57777766 4899999999863

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=80.89  E-value=2.2  Score=39.92  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++++++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   41 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVI-CDK   41 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            457899999998 489999999999999999884 454

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=80.85  E-value=2.1  Score=40.16  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+.+++.|.++|++|+ +.|.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~-~~~r   61 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVF-ICAR   61 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999995 8999999999999999988 5555

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=80.84  E-value=2.3  Score=39.46  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~-~~r   39 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVF-GDI   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            47899999999 599999999999999999884 454

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=80.83  E-value=46  Score=32.81  Aligned_cols=150  Identities=14%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHH-HHHHHHHhhc---CCCCCCceeEE--ecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCC----
Q 014463           74 EVDPDEVNALA-QLMTWKTAVA---AIPYGGAKGGI--GCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM----  143 (424)
Q Consensus        74 ~~t~~ev~~LA-~~Mt~K~Al~---~lp~GGaKggI--~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDv----  143 (424)
                      +.|.+|+..|= ....+|....   ..|.--+|-..  ...|.+-+       --+|-.++..+-|.-..+...+.    
T Consensus        32 dls~~ei~~ll~~A~~lk~~~~~~~~~~~L~gk~la~lF~e~STRT-------R~SFE~A~~~LGg~~i~l~~~~ssl~k  104 (339)
T 4a8t_A           32 TYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRT-------RVSFETAMEQLGGHGEYLAPGQIQLGG  104 (339)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHTTCCCCTTTTCEEEEEESSCCSHH-------HHHHHHHHHHTTCEEEEECCC-CCSSS
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhcCCcccccCCceEEEEecCCCchH-------HHHHHHHHHHcCCeEEEeCcccccCCC
Confidence            45666765432 3344454322   13433455543  33566522       23688888887766543432222    


Q ss_pred             CCCHHHHHHHHHHhhhh---hCCCCc------eecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHh
Q 014463          144 GTNSQTMAWILDEYSKF---HGHSPA------VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH  214 (424)
Q Consensus       144 gt~~~~m~~i~d~~~~~---~g~~~~------~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~  214 (424)
                      |=+-.|.+-+...|...   +....+      -..+.|+              ..+|+.+.-+.-+.-=+++++   +++
T Consensus       105 gEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~vPV--------------INag~~~~HPtQaLaDl~Ti~---e~~  167 (339)
T 4a8t_A          105 HETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPV--------------INGMSDYNHPTQELGDLCTMV---EHL  167 (339)
T ss_dssp             SSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHHHCSSCE--------------EECCCSSCCHHHHHHHHHHHH---HTC
T ss_pred             CcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhCCCCE--------------EECCCCCcCcHHHHHHHHHHH---HHh
Confidence            33556666666666432   111111      1134565              445543322222222233333   345


Q ss_pred             --CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEE
Q 014463          215 --GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVV  247 (424)
Q Consensus       215 --g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVV  247 (424)
                        |.+++|++|++.|= +||....+..+...|++|+
T Consensus       168 ~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~  203 (339)
T 4a8t_A          168 PEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFV  203 (339)
T ss_dssp             CTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEE
Confidence              54699999999994 7899999999999999987

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=80.82  E-value=2.2  Score=39.39  Aligned_cols=35  Identities=11%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+. .|.
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~-~~r   41 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYT-CSR   41 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE-EeC
Confidence            47899999998 589999999999999999884 454

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=80.82  E-value=1.9  Score=40.99  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEec-Ch--HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GN--VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-Gn--VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .++|+++.|.|. |.  +|+++|+.|.+.|++|+ +.+.+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~-~~~r~   66 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELA-FTYQG   66 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEE-EEECS
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEE-EEcCC
Confidence            488999999996 56  99999999999999988 55543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=80.82  E-value=1.5  Score=40.95  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r   52 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLV-LSGR   52 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999985 8999999999999999988 5555

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=80.81  E-value=3.3  Score=40.45  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHC-CCEEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVs  250 (424)
                      -.|.+|.|+|.|.||..+++++... |++|+++.
T Consensus       185 ~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~  218 (359)
T 1h2b_A          185 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD  218 (359)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            3678999999999999999999888 99998654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=80.80  E-value=1.4  Score=40.81  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~r   44 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVV-VTDL   44 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEE-EEES
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence            4589999999985 8999999999999999988 5555

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=80.78  E-value=1.4  Score=41.37  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+++|+++.|.|. |.+|+++|+.|.+.|++|+ +.|.
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~-~~~r   58 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARIL-INGT   58 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-ECCS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3589999999985 8999999999999999988 5554

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=80.74  E-value=2.2  Score=39.17  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.+ |.+
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~-~r~   40 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGF-DQA   40 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCc
Confidence            478999999995 999999999999999999854 443

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=80.74  E-value=2.2  Score=39.44  Aligned_cols=35  Identities=37%  Similarity=0.516  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+.+ |.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~-~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIA-DI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence            478999999985 999999999999999999854 44

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.66  E-value=2.2  Score=39.75  Aligned_cols=37  Identities=19%  Similarity=0.098  Sum_probs=31.2

Q ss_pred             CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..+++++++.|.| .|.+|+++++.|.++|++|+. .+.
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~-~~r   53 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVV-ASR   53 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            3468999999999 489999999999999999884 454

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=80.64  E-value=1.5  Score=41.10  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++|+++.|.|. |-+|+++|+.|.++|++|+ +.|.+
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~-~~~r~   61 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVA-VADRA   61 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-ECSSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            478999999985 8899999999999999988 56653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=80.60  E-value=2  Score=40.95  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++|+++.|.|. |.+|+++++.|.++|++|+ ++|.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~-~~~r   63 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLV-LSDV   63 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            488999999995 8999999999999999988 5555

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=80.60  E-value=1.5  Score=41.85  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++|+++.|.|. |.+|+++++.|.+.|++|+ +.|.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~-~~~r~   74 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVA-VAARS   74 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            4589999999985 8999999999999999998 55553

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=80.57  E-value=6.1  Score=36.98  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ..+-++|.|.| .|-+|+++++.|.+.|++|+++.-
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   44 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSR   44 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEec
Confidence            35668999998 499999999999999999997643

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=80.56  E-value=1.6  Score=40.19  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~r   38 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVA-FSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            478999999985 8999999999999999988 4554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=80.48  E-value=1.9  Score=41.84  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC-EEEEE
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAV  249 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaV  249 (424)
                      .|.+|.|.|.|.||..+++++...|+ +|+++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~  198 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVS  198 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            88999999999999999999999999 88854

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=80.47  E-value=2.1  Score=40.17  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~-~~r   58 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVI-ASR   58 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence            478999999994 99999999999999999885 444

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=80.43  E-value=1.9  Score=40.29  Aligned_cols=35  Identities=14%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|.   |.+|+++++.|.++|++|+. .+.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~-~~r   40 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAF-TYL   40 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEE-EES
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEE-EeC
Confidence            378899999996   69999999999999999984 454

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=80.43  E-value=1.4  Score=45.98  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND  290 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~  290 (424)
                      .+.++......+++|.|+|.+|+.+|+.|.+.|..|+ +.|.+....+.-.             ..+.    +.. ++++
T Consensus       339 ~~~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~-vid~d~~~~~~~~-------------~~i~----gD~-t~~~  399 (565)
T 4gx0_A          339 EYLIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFI-LIDRQESPVCNDH-------------VVVY----GDA-TVGQ  399 (565)
T ss_dssp             --------CCCCEEEECCSHHHHHHHHHHHHTTCCEE-EEESSCCSSCCSS-------------CEEE----SCS-SSST
T ss_pred             HHHhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECChHHHhhcC-------------CEEE----eCC-CCHH
Confidence            3334444333899999999999999999999999998 6676533222110             0000    011 2233


Q ss_pred             cc----ccccceeeeccccCc---cccccccccc--ceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          291 LL----VHECDVLVPCALGGV---LNKENAADVK--AKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       291 ll----~~~~DIliPaA~~~~---It~~na~~i~--akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      .|    -.++|.+|-+.-.+.   +..-.|+++.  .++|+-.-| +   +..++|++-|+
T Consensus       400 ~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iiar~~~-~---~~~~~l~~~G~  456 (565)
T 4gx0_A          400 TLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARANG-E---ENVDQLYAAGA  456 (565)
T ss_dssp             HHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESS-T---TSHHHHHHHTC
T ss_pred             HHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEEEECC-H---HHHHHHHHcCC
Confidence            33    246888887754332   2223344443  467776544 3   33466777787

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=80.37  E-value=1.3  Score=41.92  Aligned_cols=37  Identities=22%  Similarity=0.121  Sum_probs=27.5

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..+++|+++.|.|. |.+|+++|+.|.+.|++|+ +.|.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~r   65 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVV-ITGR   65 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            34589999999984 8999999999999999988 5555

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=80.31  E-value=2.6  Score=39.52  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      .+++|+++.|.|. |.+|+++++.|.++|++|+.+..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~   63 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV   63 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            4689999999995 88999999999999999985433

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=80.28  E-value=1.7  Score=39.77  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +++++++.|.| .|.+|+++++.|.++|++|+.+.
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~   45 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY   45 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence            47889999998 59999999999999999998553

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=80.20  E-value=2.4  Score=39.98  Aligned_cols=35  Identities=20%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++++++.|.|. |.+|+++|+.|.++|++|+ +.|.
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~-~~~r   57 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIV-LNGF   57 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            588999999995 8999999999999999998 5554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=80.16  E-value=4.9  Score=39.07  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=29.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEE
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVs  250 (424)
                      -.|.+|.|+|.|.||..+++++...|+ +|+++.
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  203 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD  203 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            367899999999999999999999999 888553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1bgva1	255	c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost	4e-71
d1b26a1	234	c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm	5e-69
d1gtma1	239	c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa	9e-68
d1v9la1	242	c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob	2e-61
d1v9la2	176	c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba	2e-59
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	7e-59
d1leha1	230	c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu	3e-58
d1b26a2	175	c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo	5e-58
d1gtma2	178	c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae	5e-57
d1bgva2	194	c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr	7e-49
d1hwxa2	208	c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B	2e-47
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	1e-43
d1leha2	134	c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus	2e-34
d1c1da2	148	c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rh	7e-33
d1ebfa1	168	c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogena	0.003

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  222 bits (567), Expect = 4e-71
 Identities = 75/249 (30%), Positives = 110/249 (44%), Gaps = 14/249 (5%)

Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 248
            GGSL R  ATG G  +  EA++     ++     A+ GFGNV   AAK   E G K V 
Sbjct: 5   FGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64

Query: 249 VSDITGAIKNPNGIDVPALLKYKKSNKSLN--------DFQGGNAMDLNDLLVHECDVLV 300
           +S   G I +P GI     + Y    ++          D  G            + D+++
Sbjct: 65  LSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIM 124

Query: 301 PCALGGVLNKENAADVKA---KFIIEAANHPTDPEADEILSK-KGVVILPDIYANSGGVT 356
           PCA    ++ E A  + A   K+ IE AN PT  EA   L +   +V+ P    N+GGV 
Sbjct: 125 PCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVL 184

Query: 357 VSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRV 414
           VS FE  QN +   W  E+V+ +L + M           + +    NL  GA  +G  ++
Sbjct: 185 VSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKI 244

Query: 415 AQATLLRGW 423
           A A + +G 
Sbjct: 245 ADAMMAQGI 253

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  216 bits (551), Expect = 5e-69
 Identities = 108/234 (46%), Positives = 150/234 (64%), Gaps = 1/234 (0%)

Query: 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVA 248
           GGS GRE ATG GV       +   G        A+QGFGNVG +AA     E G KVVA
Sbjct: 1   GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 60

Query: 249 VSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVL 308
           VSD  G I NP G DV  L++YKK + ++  +  G  +   +LL  + D+LVP AL G +
Sbjct: 61  VSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAI 120

Query: 309 NKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQG 368
           +  NA  +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q 
Sbjct: 121 HAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQS 180

Query: 369 FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
           F W+ ++V + L++ M  AF D+  + + +N ++R  A+ L ++RVA AT  RG
Sbjct: 181 FFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  213 bits (543), Expect = 9e-68
 Identities = 105/236 (44%), Positives = 141/236 (59%), Gaps = 2/236 (0%)

Query: 190 GGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
           GGSLGR  AT  G  +         G  ++     AIQG+GN G + AK    + G KVV
Sbjct: 1   GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 60

Query: 248 AVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
           AVSD  G I NP+G++   +LK+K  + S+ DF G   +   +LL  E DVL P A+  V
Sbjct: 61  AVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEV 120

Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
           + K+NA ++KAK + E AN P  PEADEIL +KG++ +PD   N+GGVTVSYFEWVQNI 
Sbjct: 121 ITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNIT 180

Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           G+ W  E+V   L + M  AF D+  + +  N ++R  A+ + V RV QA L RGW
Sbjct: 181 GYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  196 bits (500), Expect = 2e-61
 Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 191 GSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250
           G+  RE ATG GV  AT  +  +    I     AIQG GNVG W A +  + G KV+AVS
Sbjct: 2   GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61

Query: 251 DITGAIKNPNGIDVPALLKYKKSNKSL------NDFQGGNAMDLNDLLVHECDVLVPCAL 304
           DI G      G++V  + K K                     + + +   + D+ VP A+
Sbjct: 62  DINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI 121

Query: 305 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
             V+  +NA  VKA+ ++E AN PT PEA+ IL ++GVV++PDI AN+GGV +SY EWV+
Sbjct: 122 ENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181

Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDI-KTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
           N+Q ++W+EE+    L+  M++  + + K   +     +R  A    + R+  A  +RGW
Sbjct: 182 NLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 241

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  189 bits (482), Expect = 2e-59
 Identities = 73/173 (42%), Positives = 101/173 (58%), Gaps = 1/173 (0%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
             L       +    + G      + L  P R + V   +  D G    F G+R+QH + 
Sbjct: 2   GFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDV 61

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
            GP KGG+R+HPEV   +  ALA LMT K ++A +PYGGAKG +  +P++LS  ELE L+
Sbjct: 62  LGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELS 121

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPI 173
           R + + I  LIG   D+PAPD+GTN+Q MAW++DEYSK  G++ P V T KP 
Sbjct: 122 RGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPP 174

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  192 bits (488), Expect = 7e-59
 Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 61/289 (21%)

Query: 194 GREAATGLGVFFATEALLAEHG--------KSISNMKFAIQGFGNVGSWAAKFFHEHGGK 245
           GR +ATG GVF   E  +                +  FA+QGFGNVG  + ++ H  G K
Sbjct: 2   GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61

Query: 246 VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALG 305
            VAV +  G+I NP+GID   L  +K  + ++  F      +   +L  +CD+L+P A  
Sbjct: 62  CVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASE 120

Query: 306 GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQN 365
             L K NA  VKAK I E AN PT P+AD+I  ++ ++++PD+Y N+GGVTVSYF+ ++N
Sbjct: 121 KQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKN 180

Query: 366 IQGF--------------------------------------------------MWEEEK 375
           +                                                       E++ 
Sbjct: 181 LNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDI 240

Query: 376 VNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRG 422
           V+  L   M  + + I      +N   +LR  A+   + +V +     G
Sbjct: 241 VHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAG 289

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  188 bits (479), Expect = 3e-58
 Identities = 54/239 (22%), Positives = 86/239 (35%), Gaps = 28/239 (11%)

Query: 188 DLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGK 245
             G S      T  GV+   +A   E     S+  +  ++QG GNV     K  +  G K
Sbjct: 5   AFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAK 64

Query: 246 VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALG 305
           +V       A+                        +G +A+  N +    CD+  PCALG
Sbjct: 65  LVVTDVNKAAVSA------------------AVAEEGADAVAPNAIYGVTCDIFAPCALG 106

Query: 306 GVLNKENAADVKAKFIIE-AANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
            VLN      +KAK I   A N   DP   + L + G+V  PD   N+GGV     E   
Sbjct: 107 AVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVADEL-- 164

Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
               + +   +    +   +  + + I  + +       + A  +   R+A+    R  
Sbjct: 165 ----YGYNRTRAMKRVDG-IYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKARSQ 218

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  185 bits (472), Expect = 5e-58
 Identities = 83/173 (47%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           +        F  AA ++ L+S L   L  P R + VE  +  DDG +  F G+R+QH+ A
Sbjct: 1   SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVA 60

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGGIRYHP+V  DEV ALA  MTWKTAV  +P+GG KGG+  +P++LS +ELERL+
Sbjct: 61  RGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLS 120

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPI 173
           R F  +I  +IG + D+PAPD+ TN+  +AW +D YS   GH+   +VTGKP+
Sbjct: 121 RRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPV 173

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  183 bits (466), Expect = 5e-57
 Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 3/175 (1%)

Query: 2   NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNA 61
           +      +    AA+ + +  +    L  P R ++V   +  DDGS+  F GFR+QH+ A
Sbjct: 2   DPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWA 61

Query: 62  RGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLT 121
           RGP KGGIR+HPE     V ALA  MTWKTAV  +PYGG KGGI  +P++LS  E ERL 
Sbjct: 62  RGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLA 121

Query: 122 RVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH---SPAVVTGKPI 173
           R + + I+D+I  + D+PAPD+ TN Q MAW++DEY         +  ++TGKP+
Sbjct: 122 RGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPL 176

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  162 bits (412), Expect = 7e-49
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 2/149 (1%)

Query: 23  KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNA 82
            LER ++IP R I+       D+G +    G+R+Q + A GP KGG+R+ P V+   +  
Sbjct: 47  LLER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKF 105

Query: 83  LAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPD 142
           L     +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D
Sbjct: 106 LGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGD 165

Query: 143 MGTNSQTMAWILDEYSKFHGH-SPAVVTG 170
           +G  ++ + ++  +Y K  G     V+TG
Sbjct: 166 LGVGAREIGYMYGQYRKIVGGFYNGVLTG 194

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  159 bits (404), Expect = 2e-47
 Identities = 68/160 (42%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 20  LDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDE 79
               + R +      + +   I +DDGS     G+R QH + R P KGGIRY  +V  DE
Sbjct: 44  RVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDE 103

Query: 80  VNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRD 137
           V ALA LMT+K AV  +P+GGAK G+  NP+  +  +LE++TR FT ++     IG   D
Sbjct: 104 VKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVD 163

Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS----PAVVTGKPI 173
           VPAP+M T  + M+WI D Y+   GH      A VTGKPI
Sbjct: 164 VPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPI 203

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score =  149 bits (377), Expect = 1e-43
 Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 27/223 (12%)

Query: 198 ATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI 256
            T +GVF A +A +A  G  S+  +   +QG G VG   A    E G +++     T  +
Sbjct: 4   TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 63

Query: 257 KNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
            +   +                      A+ L D+L   CDV  PCA+GGV+  E A  +
Sbjct: 64  AHAVALGH-------------------TAVALEDVLSTPCDVFAPCAMGGVITTEVARTL 104

Query: 317 KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEK 375
               +  AAN+   D  A +IL  +G++  PD  AN+GG        +   +   W E  
Sbjct: 105 DCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAI-----HLVGREVLGWSESV 159

Query: 376 VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQAT 418
           V+      +      +  +           A TL   R  +A+
Sbjct: 160 VHERAVA-IGDTLNQVFEISDNDGVTPDEAARTLAGRRAREAS 201

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  122 bits (308), Expect = 2e-34
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 51  FVGFRIQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVAAIPYGGAKGGIG 106
                  HD   GP  GG R       +    +   LA+ MT+K A A +  GG K  I 
Sbjct: 25  LKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVII 84

Query: 107 CNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
            +P      ++ R    F Q ++      R + A D+GT    M  I  E  
Sbjct: 85  GDPFADKNEDMFRALGRFIQGLNG-----RYITAEDVGTTVDDMDLIHQETD 131

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score =  118 bits (298), Expect = 7e-33
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 58  HDNARGPMKGGIRYHPEVDPDE----VNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
                GP  GG R     +  +       LA  MT K AV+ +P GG K  I       S
Sbjct: 30  DSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89

Query: 114 MS--ELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGK 171
           +      R+ R+  + I  L G       PD+ TNS  M  + D            V G+
Sbjct: 90  IDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE--------FVFGR 139

Query: 172 PI 173
            +
Sbjct: 140 SL 141

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 217 SISNMKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKK 272
           S   +  A+ G G VGS                +V +++   ++ + +   +     +K 
Sbjct: 1   STKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKA 60

Query: 273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGG 306
              + +  +     DL   L      ++      
Sbjct: 61  -ALAASTTKTLPLDDLIAHLKTSPKPVILVDNTS 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1b26a2	175	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1gtma2	178	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1v9la2	176	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1hwxa2	208	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1bgva2	194	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1c1da2	148	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1leha2	134	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	97.88
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.88
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.69
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.3
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.18
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.06
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.9
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.83
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.8
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.78
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.78
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.63
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.61
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.56
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.53
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.44
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.42
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.23
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.12
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.08
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.85
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.83
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.79
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.77
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.76
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.74
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.73
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.71
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.57
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.41
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.36
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.34
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.27
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.22
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.08
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.05
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.05
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.03
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.0
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.94
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.81
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.76
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.48
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.39
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.28
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.07
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.06
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.05
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.03
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.99
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.88
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.79
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.67
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.67
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.6
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.55
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.46
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.26
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.13
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.01
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.99
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.7
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.59
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.57
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.51
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.4
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.31
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.3
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.21
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.16
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.15
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.03
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.69
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.69
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.67
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.49
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.45
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.26
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.18
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.12
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.99
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.63
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.45
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.42
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.37
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.29
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.19
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.07
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.03
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.99
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.96
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.94
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.81
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.78
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.75
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.72
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.7
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.68
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	89.62
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	89.49
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	89.48
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.45
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	89.36
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.15
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.99
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	88.93
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	88.89
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.88
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.75
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.69
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.68
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.57
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	88.54
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.49
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.47
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	88.47
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	88.43
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.43
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.24
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.19
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.11
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.01
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	87.94
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	87.93
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.9
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.76
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.68
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	87.66
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.57
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.52
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.5
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.49
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.32
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	87.32
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.22
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.12
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.11
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.06
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.95
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.91
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.8
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.75
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.74
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.62
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.41
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.25
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.2
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.17
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.94
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	85.85
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.73
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.61
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	85.58
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.43
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.18
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.17
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	84.91
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	84.9
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.89
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.87
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.58
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	84.4
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.38
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	84.32
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.28
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	84.25
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	84.23
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.23
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	84.02
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.59
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.53
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	83.52
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	83.47
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.41
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.33
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.31
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	83.29
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.19
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.01
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.94
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.73
d2uubk1	119	Ribosomal protein S11 {Thermus thermophilus [TaxId	82.62
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	82.27
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.24
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	82.09
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.88
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	80.43
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.42
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	80.4
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	80.25

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7e-70  Score=520.58  Aligned_cols=234  Identities=45%  Similarity=0.751  Sum_probs=229.9

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPAL  267 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L  267 (424)
                      |||.||.+||||||+++++++++.+|.+ ++|+||+||||||||+++|++|++ .|++||+++|++|++|||+|||+++|
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l   80 (239)
T d1gtma1           1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEV   80 (239)
T ss_dssp             TCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHH
Confidence            8999999999999999999999999975 999999999999999999999975 69999999999999999999999999


Q ss_pred             HHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 014463          268 LKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD  347 (424)
Q Consensus       268 ~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD  347 (424)
                      ++++.+++++.+||+++.++++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIl~PcA~~~~I~~~~a~~i~ak~I~e~AN~p~t~ea~~~L~~rgI~~iPD  160 (239)
T d1gtma1          81 LKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPD  160 (239)
T ss_dssp             HHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECH
T ss_pred             HHHHHhccccccCCCCeeecccccccccccEEeeccccccccHHHHHhccccEEEecCCCCCCHHHHHHHHHCCCEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          348 IYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       348 ~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +++|||||++|||||+||.++++|++++|.++|+++|.+++.++++.++++++++|+|||++|++||++||+.|||
T Consensus       161 ~~aNAGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Ria~a~~~rG~  236 (239)
T d1gtma1         161 FLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW  236 (239)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hhhCCcceeEeeeeeccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=7.9e-70  Score=524.43  Aligned_cols=236  Identities=31%  Similarity=0.479  Sum_probs=223.2

Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHH
Q 014463          188 DLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAL  267 (424)
Q Consensus       188 ~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L  267 (424)
                      ++|||.||.+||||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||+|||++|++|||+|||+++|
T Consensus         4 ~~GGs~gR~eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l   83 (255)
T d1bgva1           4 SFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEK   83 (255)
T ss_dssp             GGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHH
T ss_pred             cccCCCCCCccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-----cCCcccC---CCCeeecCCcccccccceeeeccccCccccccccccc---ceEEEecCCCCCCHHHHHH
Q 014463          268 LKYKKS-----NKSLNDF---QGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK---AKFIIEAANHPTDPEADEI  336 (424)
Q Consensus       268 ~~~~~~-----~g~v~~~---~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~---akiIvEgAN~p~t~eA~~i  336 (424)
                      +++..+     .+++.+|   .+.+.++++++|+.+||||+|||++++||++|+++++   ||+|+||||+|+||+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~  163 (255)
T d1bgva1          84 INYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRF  163 (255)
T ss_dssp             HHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH
T ss_pred             HHHHHHHhhhcCcchhhhhhhcCceeechhhcccccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHH
Confidence            988654     3444444   3567889999999999999999999999999999996   7999999999999999876


Q ss_pred             -HHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHH
Q 014463          337 -LSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNR  413 (424)
Q Consensus       337 -L~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~--~~r~aA~~~A~~r  413 (424)
                       |++|||+|+||+++|||||++|||||+||+++++|++++|+++|+++|.++++++++.++++++  ++|+|||++|++|
T Consensus       164 ll~~~gI~vvPD~laNaGGVivSy~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~a~~R  243 (255)
T d1bgva1         164 LMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQK  243 (255)
T ss_dssp             HHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             HHHhcCCEEehHhhhcCCceeeehhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence             6779999999999999999999999999999999999999999999999999999999999998  8999999999999


Q ss_pred             HHHHHHHcCC
Q 014463          414 VAQATLLRGW  423 (424)
Q Consensus       414 v~~a~~~rg~  423 (424)
                      |++||+.||+
T Consensus       244 va~A~~~rG~  253 (255)
T d1bgva1         244 IADAMMAQGI  253 (255)
T ss_dssp             HHHHHHHHCS
T ss_pred             HHHHHHHcCC
Confidence            9999999995

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-69  Score=514.90  Aligned_cols=233  Identities=46%  Similarity=0.778  Sum_probs=229.5

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463          190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALL  268 (424)
Q Consensus       190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~  268 (424)
                      |||.||.+||||||+++++++++.+|.+++|+||+||||||||+++|++|+ +.|++||+|+|++|++|||+|||+++|.
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~   80 (234)
T d1b26a1           1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELI   80 (234)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHH
T ss_pred             CCCCCccchhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHH
Confidence            899999999999999999999999999999999999999999999999996 5799999999999999999999999999


Q ss_pred             HHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          269 KYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       269 ~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                      +++++++++..|++++.++++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~~rgI~~~PD~  160 (234)
T d1b26a1          81 RYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDI  160 (234)
T ss_dssp             HHHHHSSCSTTCSSCEEECHHHHHTSCCSEEEECSCTTCBCHHHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHH
T ss_pred             HHHHhhcceeccccceeeccccccccccceeecchhcccccHHHHHHhhhceEeecCCCCCCHHHHHHHHHCCeEEechH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcC
Q 014463          349 YANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG  422 (424)
Q Consensus       349 laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rg  422 (424)
                      ++|+|||++|||||+||.++++|++|+|+++|+++|.++++++++.++++++++|+|||++|++||++||+.||
T Consensus       161 ~aNaGGVi~s~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ria~a~~~rG  234 (234)
T d1b26a1         161 LANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG  234 (234)
T ss_dssp             HHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCeeeeehhcccccchhcccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=4.7e-68  Score=509.07  Aligned_cols=233  Identities=36%  Similarity=0.639  Sum_probs=221.6

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463          191 GSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKY  270 (424)
Q Consensus       191 Gs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~  270 (424)
                      ||+||.+||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|+|||+|+|++|++|||+|||+++|.++
T Consensus         2 Gs~~r~~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~   81 (242)
T d1v9la1           2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN   81 (242)
T ss_dssp             CCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHH
Confidence            79999999999999999999998888999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCC-----cccCCCCeeec-CCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceE
Q 014463          271 KKSNKS-----LNDFQGGNAMD-LNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVI  344 (424)
Q Consensus       271 ~~~~g~-----v~~~~~~~~i~-~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~v  344 (424)
                      ++.++.     +..+++++.++ ++++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~~~~I~~~~a~~i~ak~IvegAN~p~t~~a~~~L~~rgI~~  161 (242)
T d1v9la1          82 KGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVV  161 (242)
T ss_dssp             TTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEE
T ss_pred             hhcchhhHHHhhhhccCceEeeCcchhccccccEEeecchhccccHHHHHhcccCEEEecCCCCCChhHHHHHHhCCeEE
Confidence            876553     34566776654 578999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          345 LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       345 iPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +||+++|+||||+|||||+||.++++|++++|.++|+++|.++++++++.+++ +++++|+|||++|++||++||+.|||
T Consensus       162 ~PD~~aNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~~~~~~~~~~~r~aA~~~A~~rva~a~~~rG~  241 (242)
T d1v9la1         162 VPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW  241 (242)
T ss_dssp             ECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eCchhhcCcchhhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999975 58999999999999999999999999

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-67  Score=516.32  Aligned_cols=231  Identities=35%  Similarity=0.578  Sum_probs=219.0

Q ss_pred             CCCCchhHHHHHHHHHHHHHH--------hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCH
Q 014463          193 LGREAATGLGVFFATEALLAE--------HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV  264 (424)
Q Consensus       193 ~gr~~aTg~Gv~~~~~~~~~~--------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi  264 (424)
                      .||.+||||||+++++++++.        ++.+|+|+||+||||||||+++|++|++.|+|||+|+|++|++|||+|||+
T Consensus         1 hGR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~   80 (293)
T d1hwxa1           1 HGRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDP   80 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCH
T ss_pred             CCCchHhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccch
Confidence            378999999999999999973        234699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceE
Q 014463          265 PALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVI  344 (424)
Q Consensus       265 ~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~v  344 (424)
                      ++|.+++.+++++..|++. .++++++|+.+||||+|||++++||.+||++++||+|+||||+|+||+|+++|++|||+|
T Consensus        81 ~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~DIliPaA~~~~I~~~~a~~l~ak~I~EgAN~P~t~eA~~~L~~~gI~v  159 (293)
T d1hwxa1          81 KELEDFKLQHGTILGFPKA-KIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMV  159 (293)
T ss_dssp             HHHHHHHHTTSSSTTCTTS-CBCCSCGGGCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCeeccccc-ccCCcccccCCccEEeeccccccccHHHHHHHhhCEEeccCCCCCCcchHHHHHHCCCEE
Confidence            9999999999999999865 578899999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCcchhhHHHhhhccccCCCHH--------------------------------------------------
Q 014463          345 LPDIYANSGGVTVSYFEWVQNIQGFMWEEE--------------------------------------------------  374 (424)
Q Consensus       345 iPD~laNaGGVi~s~~E~~qn~~~~~w~~e--------------------------------------------------  374 (424)
                      +||+++|||||++|||||+||+++++|+++                                                  
T Consensus       160 iPD~laNAGGV~vSy~Ew~qn~~~~~w~~~~~~~e~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~ga~E~d  239 (293)
T d1hwxa1         160 IPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD  239 (293)
T ss_dssp             ECHHHHTTHHHHHHHHHHHHHHHTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCCCCCCHHHHHHTTCCCHHH
T ss_pred             eChhhhcCchHHhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHhcCCChHH
Confidence            999999999999999999999999999743                                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHcCCC
Q 014463          375 KVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRGWE  424 (424)
Q Consensus       375 ~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rg~~  424 (424)
                      .|+++|+++|.++|+++++.+++++  +|||+|||++|++||+++++.||++
T Consensus       240 ~V~~~L~~~M~~a~~~v~~~~~~~~~~~~lR~AAy~~ai~ri~~a~~~rGi~  291 (293)
T d1hwxa1         240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVT  291 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3889999999999999999999986  7999999999999999999999974

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-65  Score=465.34  Aligned_cols=172  Identities=48%  Similarity=0.842  Sum_probs=170.0

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ++|++++.+|++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++++||+
T Consensus         1 s~~~~~~~~~~~A~~~l~l~~~~~~~L~~P~r~i~v~iPv~~DdG~~~~f~gyR~qhn~~~GP~kGGiR~~~~v~~~ev~   80 (175)
T d1b26a2           1 SLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVK   80 (175)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEEEEEEECSSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCeEEEEEEEEEECCCcEEEEEeEEEEeecccccccCCeeEcccccHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||+|||||||+++||||||||||.+||+.+|+.|+|+++|+|+++|.+++||++|||||||||++++|+||+|+|+++.
T Consensus        81 aLa~~MT~K~A~~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~l~~~iG~~~dipApDvgT~~~~M~wi~dey~~~~  160 (175)
T d1b26a2          81 ALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNV  160 (175)
T ss_dssp             HHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHGGGTCBTTTEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCccccccceeecCCCCCCHHHHHHHHHHHHHHHHhccCCCcccccCcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceecCCCc
Q 014463          162 GHS-PAVVTGKPI  173 (424)
Q Consensus       162 g~~-~~~vtGkp~  173 (424)
                      |+. +|+|||||+
T Consensus       161 g~~~~g~vTGKp~  173 (175)
T d1b26a2         161 GHTVLGIVTGKPV  173 (175)
T ss_dssp             TSCCCCSCSSCCG
T ss_pred             CCcCceeEecCcc
Confidence            985 999999998

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7e-65  Score=461.39  Aligned_cols=172  Identities=44%  Similarity=0.746  Sum_probs=169.1

Q ss_pred             CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463            2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN   81 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~   81 (424)
                      ||||+++++|++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||+
T Consensus         2 np~e~~~~~l~~A~~~~~i~~~~~e~L~~P~r~i~v~iPv~~DdG~~~~f~gyRvqhn~~~GP~kGGiR~~~~v~~~ev~   81 (178)
T d1gtma2           2 DPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVK   81 (178)
T ss_dssp             THHHHHHHHHHHHGGGSCCCHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCEEEEEEEEEEECCCCEEEEeeeEEEECCccCCCCCCeEECccCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463           82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH  161 (424)
Q Consensus        82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~  161 (424)
                      +||+|||||||+++||||||||||.+||+++|++|+||++|+|+++|.+++|+++|||||||||++++|+||+|+|+++.
T Consensus        82 aLa~~MT~K~Al~~lp~GG~Kggi~~dP~~~s~~eler~~r~f~~~l~~~iG~~~dipApDvgt~~~~M~wi~dey~~~~  161 (178)
T d1gtma2          82 ALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETIS  161 (178)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCCceeEecCCCCCCHHHHHHHHHHHHHHHHhccCCCceeccccCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC---CceecCCCc
Q 014463          162 GHS---PAVVTGKPI  173 (424)
Q Consensus       162 g~~---~~~vtGkp~  173 (424)
                      |.+   +|+|||||+
T Consensus       162 ~~~~~~~gvvTGKp~  176 (178)
T d1gtma2         162 RRKTPAFGIITGKPL  176 (178)
T ss_dssp             TTSSCGGGGCSSCCG
T ss_pred             CcccCCceEEeCCCc
Confidence            874   479999998

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=6.7e-64  Score=454.61  Aligned_cols=173  Identities=42%  Similarity=0.709  Sum_probs=170.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463            1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV   80 (424)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev   80 (424)
                      .++|++++.+|++|+++++++++++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus         1 t~fle~~~~~~~~A~~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~f~gyRvqHn~~lGPakGGiR~~~~v~~~ev   80 (176)
T d1v9la2           1 TGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADD   80 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEECSSSSEEEEEECCTTCCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCEEEEEEEEEEeCCCeEEEEeeEEEEEchhhhcccCceeECCCCCHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463           81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF  160 (424)
Q Consensus        81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~  160 (424)
                      ++||++||||||+++||||||||||.+||+.+|+.|+|+++|+|+++|.+++||++|||||||||++++|+||+|+|+++
T Consensus        81 ~aLA~~MT~K~Al~~lp~GGgKggI~~dp~~~s~~E~er~~r~f~~~l~~~iG~~~dipApDvGt~~~~M~wi~dey~~~  160 (176)
T d1v9la2          81 VALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKI  160 (176)
T ss_dssp             HHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccCccceeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccCccCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-CceecCCCc
Q 014463          161 HGHS-PAVVTGKPI  173 (424)
Q Consensus       161 ~g~~-~~~vtGkp~  173 (424)
                      .|+. ||++||||+
T Consensus       161 ~g~~~~g~vTGKP~  174 (176)
T d1v9la2         161 KGYNVPGVFTSKPP  174 (176)
T ss_dssp             HTSCCGGGSCSCCS
T ss_pred             cCCCCCceeeCCCC
Confidence            9984 999999998

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-61  Score=448.15  Aligned_cols=172  Identities=42%  Similarity=0.684  Sum_probs=165.2

Q ss_pred             CHHHHHHHHHHHHHHHc------------------CCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCC
Q 014463            2 NALTATNRNFRYAARIL------------------GLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARG   63 (424)
Q Consensus         2 ~~~~~~~~~~~~a~~~~------------------~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~G   63 (424)
                      +++++++.+|++|+.++                  ++++.++++|++|+|+++|+|||+||||++++|+|||||||+++|
T Consensus         8 ~F~~~v~~~f~~a~~~~e~~l~e~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~v~~pv~~d~G~~~~~~gyR~qHn~~lG   87 (208)
T d1hwxa2           8 NFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRT   87 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECSSSCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHhcCCCeEEEEEEEEEECCCCEEEeccEEEEECCchh
Confidence            57999999999999877                  466788999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHh--hccCCCCccccC
Q 014463           64 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH--DLIGIHRDVPAP  141 (424)
Q Consensus        64 PakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~--~~iG~~~di~ap  141 (424)
                      |+||||||||+++++||++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.  .++||+.|||||
T Consensus        88 P~kGGiR~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~igp~~dIpAp  167 (208)
T d1hwxa2          88 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAP  167 (208)
T ss_dssp             SEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCGGGSCHHHHHHHHHHHHHHHHHTTCCBTTTEEEEC
T ss_pred             ccCCCceEChhhhHHHHHHHHHHHHHHHHhhcccccCccceeecCCCCCCHHHHHHHHHHHHHHhhccccccCCCCccCc
Confidence            999999999999999999999999999999999999999999999999999999999999999995  489999999999


Q ss_pred             CCCCCHHHHHHHHHHhhhhhCC----CCceecCCCc
Q 014463          142 DMGTNSQTMAWILDEYSKFHGH----SPAVVTGKPI  173 (424)
Q Consensus       142 Dvgt~~~~m~~i~d~~~~~~g~----~~~~vtGkp~  173 (424)
                      ||||++++|+||+|+|+++.|.    .+|++||||+
T Consensus       168 DvgT~~~eM~wi~d~y~~~~g~~~~~~~g~vTGKp~  203 (208)
T d1hwxa2         168 NMSTGEREMSWIADTYASTIGHYDINAHACVTGKPI  203 (208)
T ss_dssp             BTTBCHHHHHHHHHHHHTTGGGGCTTGGGGCSSCCG
T ss_pred             cccccHHHHHHHHhhhhhhcCCCCCCCceeEeCCch
Confidence            9999999999999999999886    2799999999

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=2.6e-58  Score=422.83  Aligned_cols=168  Identities=28%  Similarity=0.521  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCH
Q 014463            3 ALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP   77 (424)
Q Consensus         3 ~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~   77 (424)
                      ++|++...++.+..+++.+|+     ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|+
T Consensus        21 F~QaV~Ev~~sl~~~i~~~p~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gyRvqhn~~lGP~kGGiR~~~~v~~  100 (194)
T d1bgva2          21 FVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNL  100 (194)
T ss_dssp             HHHHHHHHHHTTHHHHHTCHHHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECSSSSEEEEEEECTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCeEEEEEEEEEecCCcEEEEeeEEEEecCCcCCcCCCeeecCcCCH
Confidence            567888888888889999997     688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHh
Q 014463           78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEY  157 (424)
Q Consensus        78 ~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~  157 (424)
                      +||++||++||||||+++||||||||||.+||+.+|+.|++|++|+|+++|.+++|++.|||||||||++++|+||+|+|
T Consensus       101 ~ev~~La~~MT~K~Al~~lp~GGgKggi~~dP~~~s~~el~r~~r~~~~~l~~~ig~~~DIpApDvgt~~~eM~wi~d~y  180 (194)
T d1bgva2         101 SIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQY  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcCCCcccccceeccCCCCCCHHHHHHHHHHHHHHhccccCCCccccCCcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCC-CCceecC
Q 014463          158 SKFHGH-SPAVVTG  170 (424)
Q Consensus       158 ~~~~g~-~~~~vtG  170 (424)
                      +++.|. .||++||
T Consensus       181 ~~~~g~~~~gvvTG  194 (194)
T d1bgva2         181 RKIVGGFYNGVLTG  194 (194)
T ss_dssp             HHHHTSCCGGGSSS
T ss_pred             HHhcCCCCCeeecC
Confidence            999986 5899997

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=3.5e-56  Score=422.69  Aligned_cols=211  Identities=26%  Similarity=0.420  Sum_probs=192.6

Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHH-hC-CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          188 DLGGSLGREAATGLGVFFATEALLAE-HG-KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       188 ~~GGs~gr~~aTg~Gv~~~~~~~~~~-~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      ++|||.+|.++|||||++++++++++ +| .+|+|+||+||||||||+++|++|++.|+|||++ |.          |..
T Consensus         5 ~~GGs~~~~~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~-d~----------~~~   73 (230)
T d1leha1           5 AFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT-DV----------NKA   73 (230)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-CS----------CHH
T ss_pred             hhCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEee-cc----------cHH
Confidence            99999999999999999999999995 45 5699999999999999999999999999999954 32          445


Q ss_pred             HHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCC-CCHHHHHHHHhCCceE
Q 014463          266 ALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI  344 (424)
Q Consensus       266 ~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p-~t~eA~~iL~~rGI~v  344 (424)
                      .+.+++..       ++++.++++++|+.+||||+|||++++||++|+++++||+|+|+||+| +||+++++|++|||+|
T Consensus        74 ~~~~~~~~-------~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~~~~l~ak~Ive~ANn~~t~~ea~~~L~~rGI~~  146 (230)
T d1leha1          74 AVSAAVAE-------EGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVY  146 (230)
T ss_dssp             HHHHHHHH-------HCCEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHHHTCEE
T ss_pred             HHHHHHHh-------cCCcccCCcccccccccEecccccccccChHHhhccCccEEEecccCCCCCchHHHHHHhhCcEE
Confidence            55555543       356778899999999999999999999999999999999999999877 5699999999999999


Q ss_pred             eccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463          345 LPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW  423 (424)
Q Consensus       345 iPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~~~rg~  423 (424)
                      +|||++||||||+||+||.+      |+++++.++++. |.+++.++++.++++++++|+||+++|++||++||+.||+
T Consensus       147 iPD~laNAGGVi~s~~E~~~------~~~~~~~~~l~~-I~~~~~~vl~~a~~~~~~~~~aA~~~A~~ri~~a~~~rg~  218 (230)
T d1leha1         147 APDYVINAGGVINVADELYG------YNRTRAMKRVDG-IYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKARSQ  218 (230)
T ss_dssp             CCHHHHTTHHHHHHHHGGGC------CCHHHHHHHHTH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             EeehhhcccchhhhhhhhhC------CCHHHHHHHHHH-HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999954      999999999986 6799999999999999999999999999999999999996

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=4e-49  Score=367.47  Aligned_cols=196  Identities=30%  Similarity=0.468  Sum_probs=176.9

Q ss_pred             chhHHHHHHHHHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463          197 AATGLGVFFATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK  275 (424)
Q Consensus       197 ~aTg~Gv~~~~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g  275 (424)
                      .+||+||++++++++++.|. +|+|+||+||||||||+++|++|++.|+||+ ++|.          |...+.....   
T Consensus         3 ~~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvv-v~d~----------d~~~~~~~~~---   68 (201)
T d1c1da1           3 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADT----------DTERVAHAVA---   68 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------CHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-Eecc----------hHHHHHHHHh---
Confidence            47999999999999999997 5999999999999999999999999999999 7775          3444443332   


Q ss_pred             CcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHH-HHHHHHhCCceEeccccccccC
Q 014463          276 SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPE-ADEILSKKGVVILPDIYANSGG  354 (424)
Q Consensus       276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~e-A~~iL~~rGI~viPD~laNaGG  354 (424)
                           .+.+.++++++|+.+||||+|||++++||++|+++++||+|+||||+|+|++ ++++|++|||+|+||+++||||
T Consensus        69 -----~g~~~~~~~~~~~~~~DI~iPcA~~~~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD~laNAGG  143 (201)
T d1c1da1          69 -----LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGG  143 (201)
T ss_dssp             -----TTCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTHH
T ss_pred             -----hcccccCccccccccceeeecccccccccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEEehhhhccch
Confidence                 1456788899999999999999999999999999999999999999998865 7899999999999999999999


Q ss_pred             cchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014463          355 VTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQA  417 (424)
Q Consensus       355 Vi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a  417 (424)
                      |+.++.||.     +.|+++++.+++++ |.+++.++++.+++++++||++||++|++||++|
T Consensus       144 Vi~~~~~~~-----~~~~~~~v~~~l~~-i~~~~~~i~~~a~~~~~~~~~aA~~~A~~ri~~A  200 (201)
T d1c1da1         144 AIHLVGREV-----LGWSESVVHERAVA-IGDTLNQVFEISDNDGVTPDEAARTLAGRRAREA  200 (201)
T ss_dssp             HHHHHHHHT-----TCCCHHHHHHHHHT-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-----cCCCHHHHHHHHHH-HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence            998777764     57999999999986 7788999999999999999999999999999986

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=2.8e-38  Score=279.58  Aligned_cols=119  Identities=29%  Similarity=0.366  Sum_probs=111.1

Q ss_pred             EEEEEEeecCCCCCCCCCeeeecCCCH----HHHHHHHHHHHHHHhhcCCCCCCceeEEecCCC--CCCHHHHHHHHHHH
Q 014463           51 FVGFRIQHDNARGPMKGGIRYHPEVDP----DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPR--ELSMSELERLTRVF  124 (424)
Q Consensus        51 ~~Gyrv~h~~~~GPakGGiR~~~~~t~----~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~--~~s~~e~e~~~r~~  124 (424)
                      .+++.++||+++||++|||||||++|.    +|+++||++|||||||++||||||||||.+||+  +.++.|+++++|+|
T Consensus        23 l~~iiaIH~t~lGPa~GG~R~~~y~s~~~al~dvl~LA~~MT~K~Alaglp~GGgKg~I~~dp~~~~~~~~e~~~l~r~~  102 (148)
T d1c1da2          23 AHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIH  102 (148)
T ss_dssp             EEEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECSSCGGGCCHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCCCcceEEEecCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcceEEecCCCcCCCCHHHHHHHHHHH
Confidence            488999999999999999999999994    569999999999999999999999999999996  45688999999999


Q ss_pred             HHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCC
Q 014463          125 TQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSL  193 (424)
Q Consensus       125 ~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~  193 (424)
                      .++|.+++|+  |||||||||++++|+||+++|+        +|||||.              ++|||.
T Consensus       103 ~~~l~~l~G~--yi~a~DvGt~~~dm~~i~~~t~--------~vtGk~~--------------~~GGsG  147 (148)
T d1c1da2         103 AENIDKLSGN--YWTGPDVNTNSADMDTLNDTTE--------FVFGRSL--------------ERGGAG  147 (148)
T ss_dssp             HHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCS--------CBCCCCG--------------GGTSCC
T ss_pred             HHHHHHhCCc--EeecCCCCCCHHHHHHHHhhCC--------eeEecCc--------------ccCCCC
Confidence            9999999997  5999999999999999999986        4899999              999985

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=1e-33  Score=246.31  Aligned_cols=118  Identities=25%  Similarity=0.264  Sum_probs=101.1

Q ss_pred             CCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHH----HHHHHHHHHHHHHhhcCCCCCCceeEE
Q 014463           30 IPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD----EVNALAQLMTWKTAVAAIPYGGAKGGI  105 (424)
Q Consensus        30 ~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~----ev~~LA~~Mt~K~Al~~lp~GGaKggI  105 (424)
                      .+++++.++-|.   .    -++||+++||+.+||++|||||||++|.+    |+++||++||||||++++|||||||||
T Consensus        11 ~~e~v~~~~d~~---t----gl~a~iaihnt~~GPa~GG~R~~~y~s~~~al~dvlrLA~~MT~K~ala~lp~GGgK~vI   83 (134)
T d1leha2          11 DYEQLVFCQDEA---S----GLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVI   83 (134)
T ss_dssp             TCCEEEEEEETT---T----TEEEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred             CCcEEEEEecCC---C----CcEEEEEEeCCCCCCCcccEEEeccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCcceee
Confidence            477877776443   2    38999999999999999999999999854    699999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhh
Q 014463          106 GCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSK  159 (424)
Q Consensus       106 ~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~  159 (424)
                      .+||+..+..|+   .|.|.+++.++.|.  ||||||+||+++||+||+++++.
T Consensus        84 ~~dp~~~~~~el---~r~~~~~v~~L~g~--yi~a~DvGt~~~dm~~i~~~t~~  132 (134)
T d1leha2          84 IGDPFADKNEDM---FRALGRFIQGLNGR--YITAEDVGTTVDDMDLIHQETDY  132 (134)
T ss_dssp             ESCTTTTCCHHH---HHHHHHHHHTTTTS--EEBCBCTTCCHHHHHHHHTTCSC
T ss_pred             ecCCCCCCHHHH---HHHHHHHHHhCCCc--EEccCCCCCCHHHHHHHHHhCCc
Confidence            999999887664   55566666666665  49999999999999999998763

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=6.8e-06  Score=71.88  Aligned_cols=49  Identities=14%  Similarity=0.063  Sum_probs=42.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALL  268 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~  268 (424)
                      -.+|+|.|||+||+.+++.|.++.    .+|++|+|+++.+++++|+|++...
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~   56 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGS   56 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTT
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhh
Confidence            357899999999999999997654    5999999999999999999876443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.2e-05  Score=67.52  Aligned_cols=102  Identities=16%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL  277 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v  277 (424)
                      .||...+.   .+++..+..+.||+|.|.|||.||+.+|+.|+..|++|+ |+|.+-         +.+|.++..     
T Consensus         5 g~g~S~~~---~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~-v~e~dp---------~~al~A~~d-----   66 (163)
T d1li4a1           5 GCRESLID---GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI-ITEIDP---------INALQAAME-----   66 (163)
T ss_dssp             HHHHHHHH---HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSCH---------HHHHHHHHT-----
T ss_pred             cchhhHHH---HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeE-eeeccc---------chhHHhhcC-----
Confidence            35555443   344567888999999999999999999999999999998 888741         344444322     


Q ss_pred             ccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEE
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFII  322 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIv  322 (424)
                          +.+..+.++.+ ..+|++|-|.- .++|+.+..+++|=..|+
T Consensus        67 ----G~~v~~~~~a~-~~adivvtaTGn~~vI~~eh~~~MKdgaIL  107 (163)
T d1li4a1          67 ----GYEVTTMDEAC-QEGNIFVTTTGCIDIILGRHFEQMKDDAIV  107 (163)
T ss_dssp             ----TCEECCHHHHT-TTCSEEEECSSCSCSBCHHHHTTCCTTEEE
T ss_pred             ----ceEeeehhhhh-hhccEEEecCCCccchhHHHHHhccCCeEE
Confidence                22222223332 35788877765 368999988888766555

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.69  E-value=5.8e-05  Score=65.72  Aligned_cols=101  Identities=21%  Similarity=0.343  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN  278 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~  278 (424)
                      ||..++.+   +++..+.-+.|++++|.|||.||+.+|+.|...|++|+ |++.+-         +.+|.++.      .
T Consensus         5 ~g~S~~d~---i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~-V~E~DP---------i~alqA~m------d   65 (163)
T d1v8ba1           5 CRHSLPDG---LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITEIDP---------ICAIQAVM------E   65 (163)
T ss_dssp             HHHHHHHH---HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSCH---------HHHHHHHT------T
T ss_pred             cchhHHHH---HHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEE-EEecCc---------hhhHHHHh------c
Confidence            55555533   44566788999999999999999999999999999998 888742         44444432      2


Q ss_pred             cCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEE
Q 014463          279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFII  322 (424)
Q Consensus       279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIv  322 (424)
                      +|   +..+-++.+ ...||+|-|.- .++|+.+-.+++|-..|+
T Consensus        66 Gf---~v~~~~~a~-~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl  106 (163)
T d1v8ba1          66 GF---NVVTLDEIV-DKGDFFITCTGNVDVIKLEHLLKMKNNAVV  106 (163)
T ss_dssp             TC---EECCHHHHT-TTCSEEEECCSSSSSBCHHHHTTCCTTCEE
T ss_pred             CC---ccCchhHcc-ccCcEEEEcCCCCccccHHHHHHhhCCeEE
Confidence            23   333333433 36799998875 457888888887665555

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.0014  Score=56.41  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      |.|.+.+    |++.|.+++|++|.|.|.|.+++.++-.|.+.|++| .|.+.+          .++..+..+....   
T Consensus         2 g~Gf~~~----l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i-~I~nRt----------~~ka~~l~~~~~~---   63 (170)
T d1nyta1           2 GVGLLSD----LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAV-TITNRT----------VSRAEELAKLFAH---   63 (170)
T ss_dssp             HHHHHHH----HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEE-EEECSS----------HHHHHHHHHHTGG---
T ss_pred             HhHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEE-Eeccch----------HHHHHHHHHHHhh---
Confidence            4555555    455688999999999999999999999999999994 487764          3444443332111   


Q ss_pred             CCCCeeecCCcccccccceeeeccccCcc---cccccccc-cceEEEecCCCCC-CHHHHHHHHhCCce
Q 014463          280 FQGGNAMDLNDLLVHECDVLVPCALGGVL---NKENAADV-KAKFIIEAANHPT-DPEADEILSKKGVV  343 (424)
Q Consensus       280 ~~~~~~i~~~~ll~~~~DIliPaA~~~~I---t~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~  343 (424)
                      ....+.++.++....++|++|-|.--+.-   .......+ +..+|.+..-.|. |+ --+..+++|..
T Consensus        64 ~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G~~  131 (170)
T d1nyta1          64 TGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTP-FLAWCEQRGSK  131 (170)
T ss_dssp             GSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCH-HHHHHHHTTCC
T ss_pred             cccccccccccccccccceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCH-HHHHHHHcCCC
Confidence            11122334445555689999988643322   11111223 4568889998885 65 44566788864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.30  E-value=0.00015  Score=62.95  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--ccccc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VHECD  297 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~~~~D  297 (424)
                      .++|.|+|+|++|+.+|+.|.++|.+|+ +.|.+          .+++.++.++........++..  .+++.  ..++|
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~   68 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVC-AFNRT----------VSKVDDFLANEAKGTKVLGAHS--LEEMVSKLKKPR   68 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEE-EECSS----------THHHHHHHHTTTTTSSCEECSS--HHHHHHHBCSSC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHhccccccccchhh--hhhhhhhhcccc
Confidence            3579999999999999999999999987 66653          4555555554322111111111  12222  34678


Q ss_pred             eeeeccccCccccccccc----c-cceEEEecCCCC--CCHHHHHHHHhCCceEe
Q 014463          298 VLVPCALGGVLNKENAAD----V-KAKFIIEAANHP--TDPEADEILSKKGVVIL  345 (424)
Q Consensus       298 IliPaA~~~~It~~na~~----i-~akiIvEgAN~p--~t~eA~~iL~~rGI~vi  345 (424)
                      +++.|........+-...    + .-++|++-.+..  .+.+..+.+.++|+.++
T Consensus        69 ~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          69 RIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             EEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence            888886544322221211    2 236788777654  34566788999999987

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.00032  Score=59.91  Aligned_cols=108  Identities=23%  Similarity=0.328  Sum_probs=69.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|.|+|+|++|+.+|+.|.++|.+|+ +.|.+          .+++.++.+...        ...++.+-...+||+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~-~~d~~----------~~~~~~~~~~~~--------~~~~~~~e~~~~~d~ii   61 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSDRN----------PEAIADVIAAGA--------ETASTAKAIAEQCDVII   61 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHTTC--------EECSSHHHHHHHCSEEE
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEE-EEeCC----------cchhHHHHHhhh--------hhcccHHHHHhCCCeEE
Confidence            579999999999999999999999987 66763          455555554432        22222222345899999


Q ss_pred             eccccC-----cccccc--cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecc
Q 014463          301 PCALGG-----VLNKEN--AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPD  347 (424)
Q Consensus       301 PaA~~~-----~It~~n--a~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD  347 (424)
                      -|--..     ++..++  .... +=++|++..+..  ++.+..+.+.++|+.++.-
T Consensus        62 ~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (161)
T d1vpda2          62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA  118 (161)
T ss_dssp             ECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             EEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc
Confidence            885322     121111  1111 336888877754  2445667899999988753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.18  E-value=0.00034  Score=62.39  Aligned_cols=113  Identities=21%  Similarity=0.368  Sum_probs=71.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      |.++.|+||.|+|||++|+.+|++|...|++|++ .|...        +...     ...    .+   ...+-++++ .
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~-~d~~~--------~~~~-----~~~----~~---~~~~l~~~l-~   95 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT-YDIFR--------NPEL-----EKK----GY---YVDSLDDLY-K   95 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSC--------CHHH-----HHT----TC---BCSCHHHHH-H
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccc-cCccc--------cccc-----ccc----ee---eeccccccc-c
Confidence            4568999999999999999999999999999984 34321        1110     010    11   111123444 3


Q ss_pred             ccceeeeccc-----cCcccccccccc-cceEEEecCCCCC-CHHH-HHHHHhCCce-Eecccc
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADV-KAKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIY  349 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i-~akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~l  349 (424)
                      +|||++-|.-     .+.|+.+....+ +-.+++-.|=+++ +.+| .+.|.++-|. +.=|.+
T Consensus        96 ~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          96 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             ccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            7899988763     334555555554 3458888888884 5555 3667776654 444443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.06  E-value=0.0015  Score=55.98  Aligned_cols=104  Identities=24%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463          206 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA  285 (424)
Q Consensus       206 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~  285 (424)
                      +++.+.+.++ ++++++|+|+|.|.+|+.+++.|...|++-+.|+..+          .+...++.++.+       .+.
T Consensus        11 Av~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt----------~~ka~~l~~~~~-------~~~   72 (159)
T d1gpja2          11 AVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT----------YERAVELARDLG-------GEA   72 (159)
T ss_dssp             HHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS----------HHHHHHHHHHHT-------CEE
T ss_pred             HHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc----------HHHHHHHHHhhh-------ccc
Confidence            4444444555 6999999999999999999999999999766688764          344444444321       223


Q ss_pred             ecCCcccc--cccceeeecccc--Ccccccccccc-------cceEEEecCCC
Q 014463          286 MDLNDLLV--HECDVLVPCALG--GVLNKENAADV-------KAKFIIEAANH  327 (424)
Q Consensus       286 i~~~~ll~--~~~DIliPaA~~--~~It~~na~~i-------~akiIvEgAN~  327 (424)
                      ++-+++.+  .++||+|-|.-.  ..|+.++.+..       +-.+|++-|..
T Consensus        73 ~~~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          73 VRFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             CCGGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             ccchhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            33344443  389999999753  35777766532       12367776643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.91  E-value=0.003  Score=53.35  Aligned_cols=89  Identities=16%  Similarity=0.205  Sum_probs=54.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      +||+|+|+|++|+.+|+.|.++|.+|++ .|.+          .+.+.+.++ .+.+.     ...++.+.+ .+||++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~-~d~~----------~~~~~~a~~-~~~~~-----~~~~~~~~~-~~~DiIi   62 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIG-VSRQ----------QSTCEKAVE-RQLVD-----EAGQDLSLL-QTAKIIF   62 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSC----------HHHHHHHHH-TTSCS-----EEESCGGGG-TTCSEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEE-EECC----------chHHHHHHH-hhccc-----eeeeecccc-ccccccc
Confidence            5899999999999999999999999874 4653          333433333 23222     122333333 5899999


Q ss_pred             eccccCcccccc----cccc-cceEEEecCCCC
Q 014463          301 PCALGGVLNKEN----AADV-KAKFIIEAANHP  328 (424)
Q Consensus       301 PaA~~~~It~~n----a~~i-~akiIvEgAN~p  328 (424)
                      -|.-.. ..++.    .+.+ .-.+|+.-++..
T Consensus        63 lavp~~-~~~~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          63 LCTPIQ-LILPTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             ECSCHH-HHHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             ccCcHh-hhhhhhhhhhhhcccccceeeccccc
Confidence            875322 12222    2222 345777776653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.90  E-value=0.0018  Score=57.43  Aligned_cols=105  Identities=25%  Similarity=0.356  Sum_probs=66.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|++|.|.|+|++|+.+|++|...|++|++ .|....    ++                 ........+-++++ .
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~-~d~~~~----~~-----------------~~~~~~~~~l~~l~-~   96 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA-YDPYPM----KG-----------------DHPDFDYVSLEDLF-K   96 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE-ECSSCC----SS-----------------CCTTCEECCHHHHH-H
T ss_pred             cccccceeeeeeecccccccccccccccceeeec-cCCccc----hh-----------------hhcchhHHHHHHHH-H
Confidence            5679999999999999999999999999999984 443210    00                 00011222323444 4


Q ss_pred             ccceeeeccc-----cCcccccccccc-cceEEEecCCCCC-CHHHH-HHHHhCCc
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADV-KAKFIIEAANHPT-DPEAD-EILSKKGV  342 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i-~akiIvEgAN~p~-t~eA~-~iL~~rGI  342 (424)
                      .||+++.+.-     .+.|+.+....+ +-.+++-.|=+.+ ..+|- +.|.+.-|
T Consensus        97 ~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i  152 (199)
T d1dxya1          97 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL  152 (199)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             hcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence            6888887752     334565555555 3457788888875 44443 45555443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.83  E-value=0.0041  Score=53.56  Aligned_cols=133  Identities=15%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC--c
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS--L  277 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~--v  277 (424)
                      |.|+..+    +++.+.++++++|.|.|.|.+++.++..|.+.| +|. |...+          .++..+..+....  .
T Consensus         2 ~~G~~~~----l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~-I~nR~----------~~ka~~l~~~~~~~~~   65 (177)
T d1nvta1           2 GIGARMA----LEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IANRT----------VEKAEALAKEIAEKLN   65 (177)
T ss_dssp             HHHHHHH----HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EECSS----------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH----HHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-cee-eehhh----------hhHHHHHHHHHHHhhc
Confidence            3455544    445567899999999999999999998887766 554 77663          4444333221100  0


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCcc---ccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVL---NKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILPDI  348 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~I---t~~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~  348 (424)
                      ..+........-+-...+.|++|-|..-+..   +..   +...+ +..++.+-...|-...--+..+++|..+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~~~i~Gl  143 (177)
T d1nvta1          66 KKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGL  143 (177)
T ss_dssp             CCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTCEEECTH
T ss_pred             hhhhhhhhhhhhhhccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCCcccCCH
Confidence            0000001122222234578999887643322   111   12222 56688899988854344456788898887644

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=0.00069  Score=55.47  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~  296 (424)
                      |+++|.|+|.+|+.+++.|.+.|..|+ |.|.          |.+.+.+..... .-.-+.+   .+..++|    -.+|
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vv-vid~----------d~~~~~~~~~~~-~~~~~gd---~~~~~~l~~a~i~~a   65 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVL-AVDI----------NEEKVNAYASYA-THAVIAN---ATEENELLSLGIRNF   65 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCE-EEES----------CHHHHHHTTTTC-SEEEECC---TTCTTHHHHHTGGGC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEE-EecC----------cHHHHHHHHHhC-Ccceeee---cccchhhhccCCccc
Confidence            579999999999999999999999998 5565          355555544322 1111111   1223333    2368


Q ss_pred             ceeeeccccCccc----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          297 DVLVPCALGGVLN----KENAADV-KAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       297 DIliPaA~~~~It----~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      |.+|-+.-.+.-+    ..-++.. ..++|+-..    +++-.++|++-|+
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~----~~~~~~~l~~~Ga  112 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQ----NYYHHKVLEKIGA  112 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----SHHHHHHHHHHTC
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecc----cHhHHHHHHHCCC
Confidence            8777665443211    1111222 235666443    3566678888887

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.0021  Score=54.62  Aligned_cols=106  Identities=17%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      ++|.++|.|++|+.+|+.|.++|..|. +.|.+          .++............       .+..++ -.+||+++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~-~~d~~----------~~~~~~~~~~~~~~~-------~~~~e~-~~~~diii   62 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFDLV----------QSAVDGLVAAGASAA-------RSARDA-VQGADVVI   62 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSS----------HHHHHHHHHTTCEEC-------SSHHHH-HTSCSEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEE-EEECc----------hhhhhhhhhhhcccc-------chhhhh-ccccCeee
Confidence            479999999999999999999999986 66653          344444433321111       111222 34688888


Q ss_pred             eccccCccccc-------ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEe
Q 014463          301 PCALGGVLNKE-------NAADV-KAKFIIEAANHP--TDPEADEILSKKGVVIL  345 (424)
Q Consensus       301 PaA~~~~It~~-------na~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~vi  345 (424)
                      -|-....-.++       ....+ +-++|++..+..  .+.+..+.|+++|+.++
T Consensus        63 ~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          63 SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             ECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            87643321111       12222 347899888774  35567789999999887

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.007  Score=52.02  Aligned_cols=124  Identities=13%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463          200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND  279 (424)
Q Consensus       200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~  279 (424)
                      |.|...+    ++.++.++++++|.|.|.|.+++.++..|.+.+.+|+ |...+          .+++....+.-+..  
T Consensus         2 ~~Gf~~~----l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~-I~nR~----------~~~a~~l~~~~~~~--   64 (171)
T d1p77a1           2 GIGLVTD----LQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LANRT----------FSKTKELAERFQPY--   64 (171)
T ss_dssp             HHHHHHH----HHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEESS----------HHHHHHHHHHHGGG--
T ss_pred             HHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceee-eccch----------HHHHHHHHHHHhhc--
Confidence            3454444    4556888999999999999999999999988777765 77764          34444443322111  


Q ss_pred             CCCCeeecCCcccccccceeeeccccCccc---ccccccc-cceEEEecCC-CCC-CHHHHHHHHhCCc
Q 014463          280 FQGGNAMDLNDLLVHECDVLVPCALGGVLN---KENAADV-KAKFIIEAAN-HPT-DPEADEILSKKGV  342 (424)
Q Consensus       280 ~~~~~~i~~~~ll~~~~DIliPaA~~~~It---~~na~~i-~akiIvEgAN-~p~-t~eA~~iL~~rGI  342 (424)
                       .....++.++.-..++|++|=|.--+.-.   ......+ ...++.+-.- .|. |+ --+.-+++|.
T Consensus        65 -~~~~~~~~~~~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~-~l~~A~~~g~  131 (171)
T d1p77a1          65 -GNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGL  131 (171)
T ss_dssp             -SCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTC
T ss_pred             -cccchhhhccccccccceeeecccccccccccchhhhhhcccceeeeeeccCcccHH-HHHHHHHcCC
Confidence             12223333344456899999886433211   1111111 2345666554 454 43 2344556776

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.78  E-value=0.002  Score=57.05  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccc
Q 014463          214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLL  292 (424)
Q Consensus       214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll  292 (424)
                      .+..+.|+||.|+|+|++|+.+|++|...|++|++ .|...       -+ +....           .+....+ -++++
T Consensus        43 ~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~-~d~~~-------~~-~~~~~-----------~~~~~~~~l~~ll  102 (193)
T d1mx3a1          43 GAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF-YDPYL-------SD-GVERA-----------LGLQRVSTLQDLL  102 (193)
T ss_dssp             TCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECTTS-------CT-THHHH-----------HTCEECSSHHHHH
T ss_pred             CceeeeCceEEEeccccccccceeeeeccccceee-ccCcc-------cc-cchhh-----------hccccccchhhcc
Confidence            35679999999999999999999999999999984 34321       11 00000           0112222 23444


Q ss_pred             ccccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccccc
Q 014463          293 VHECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIYAN  351 (424)
Q Consensus       293 ~~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~laN  351 (424)
                       ..||+++.+.-     .+.|+.+....++ -.+++--|=+.+ ..+|- +.|.++-|. +.=|+..+
T Consensus       103 -~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~  169 (193)
T d1mx3a1         103 -FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES  169 (193)
T ss_dssp             -HHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred             -ccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcCCC
Confidence             36899876653     3345555555553 468888888885 55553 677777664 45555433

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.74  E-value=0.0019  Score=55.47  Aligned_cols=116  Identities=17%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccccc--cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLV--HECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~--~~~D  297 (424)
                      ++|.|+|.|++|..+|+.|.++|..|. +.|.          +.++..+..++.......+..+.... +++..  .+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~-~~dr----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFNR----------TYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR   70 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEE-EECS----------SHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEE-EEEC----------CHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccce
Confidence            579999999999999999999999987 5555          36677777666544433322222111 11221  1233


Q ss_pred             eeeeccccCccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecc
Q 014463          298 VLVPCALGGVLNKE----NAADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPD  347 (424)
Q Consensus       298 IliPaA~~~~It~~----na~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD  347 (424)
                      +.+.+.........    ....+ .-++|++-....  .+.+..+.|.++|+.++-.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda  127 (178)
T d1pgja2          71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM  127 (178)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             EEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecc
Confidence            33333222211111    11112 335666666553  2456667899999987643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.63  E-value=0.0013  Score=53.99  Aligned_cols=104  Identities=22%  Similarity=0.256  Sum_probs=61.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~  296 (424)
                      ++|+|.|+|.+|+.+++.|.+.|..|+ |.|.          |.+.+.+..++.+. .-+.+ . .+..++|    -.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~-vid~----------d~~~~~~~~~~~~~-~vi~G-d-~~~~~~l~~~~i~~a   66 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIV-LIDI----------DKDICKKASAEIDA-LVING-D-CTKIKTLEDAGIEDA   66 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHCSS-EEEES-C-TTSHHHHHHTTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcc-eecC----------Chhhhhhhhhhhhh-hhccC-c-ccchhhhhhcChhhh
Confidence            589999999999999999999999998 5576          45556555444221 11100 0 1112222    2468


Q ss_pred             ceeeeccccCc---ccccccccccce-EEEecCCCCCCHHHHHHHHhCCc
Q 014463          297 DVLVPCALGGV---LNKENAADVKAK-FIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       297 DIliPaA~~~~---It~~na~~i~ak-iIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      |.++-+.-...   +....++.+..+ +|+ =+|.   ++-.+.|++-|+
T Consensus        67 ~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~-~~~~---~~~~~~l~~~G~  112 (132)
T d1lssa_          67 DMYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISE---IEYKDVFERLGV  112 (132)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSS---TTHHHHHHHTTC
T ss_pred             hhhcccCCcHHHHHHHHHHHHHcCCceEEE-EecC---HHHHHHHHHCCC
Confidence            88887754332   222233444443 443 3443   344568899888

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00082  Score=52.19  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +++|++|+|.|+|.-|..+|++|.++|++|. ++|.+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~-~~D~~   37 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMDTR   37 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCE-EEESS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EeeCC
Confidence            5899999999999999999999999999998 67753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.015  Score=49.55  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe
Q 014463          205 FATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN  284 (424)
Q Consensus       205 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~  284 (424)
                      .++..+++..+.+ ++++|.|.|.|.+++.++..|.+.|++-|.|.+.+          .++...+.+..       +..
T Consensus         3 ~G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~----------~~ka~~L~~~~-------~~~   64 (167)
T d1npya1           3 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN----------VKTGQYLAALY-------GYA   64 (167)
T ss_dssp             HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC----------HHHHHHHHHHH-------TCE
T ss_pred             HHHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc----------HHHHHHHHHhh-------hhh
Confidence            3456678888886 78999999999999999999999998655587763          34444433321       112


Q ss_pred             eecCCcccccccceeeeccccCc---ccccc--ccc--c-cceEEEecCCCCC-CHHHHHHHHhCCceEecc
Q 014463          285 AMDLNDLLVHECDVLVPCALGGV---LNKEN--AAD--V-KAKFIIEAANHPT-DPEADEILSKKGVVILPD  347 (424)
Q Consensus       285 ~i~~~~ll~~~~DIliPaA~~~~---It~~n--a~~--i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viPD  347 (424)
                      .+.  .+...++|++|-|.--+.   ..+..  .+.  + +..+|.+-.-.|. |+ --+..+++|..++..
T Consensus        65 ~~~--~~~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~-ll~~A~~~G~~~i~G  133 (167)
T d1npya1          65 YIN--SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP-FIRYAQARGKQTISG  133 (167)
T ss_dssp             EES--CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCH-HHHHHHHTTCEEECH
T ss_pred             hhh--cccccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCH-HHHHHHHCCCeEEEC
Confidence            222  233457999998753221   11111  111  1 4568899888885 54 445567888776543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.53  E-value=0.0076  Score=50.92  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee------ecC--Cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA------MDL--NDLL  292 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~------i~~--~~ll  292 (424)
                      +||+|+|.|++|..+|..|.+.|..|+ +.|.+          .+.+...++........++.+.      .+.  .+.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~-~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVL-AWDID----------AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC----------HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            799999999999999999999999987 55542          3444444443332222222221      111  1222


Q ss_pred             ccccceeeeccccCccc---ccccccc-cceEEEecCCCCC-CHHHHHHHHhCCc
Q 014463          293 VHECDVLVPCALGGVLN---KENAADV-KAKFIIEAANHPT-DPEADEILSKKGV  342 (424)
Q Consensus       293 ~~~~DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI  342 (424)
                       .++|++|.|--...+.   ++-++.+ +-.+|+-..|.+. +.+..+.+.+++.
T Consensus        71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTC
T ss_pred             -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcC
Confidence             4799999886444321   1123333 2245565555544 4456678887764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.0062  Score=53.12  Aligned_cols=106  Identities=19%  Similarity=0.273  Sum_probs=68.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD  297 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D  297 (424)
                      +.|++|.|.|+|++|+.+++++...|++|++ .|.+.       -+           +...     ..-+-++++ .+||
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~-~d~~~-------~~-----------~~~~-----~~~~l~ell-~~sD   94 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRG-FSRTP-------KE-----------GPWR-----FTNSLEEAL-REAR   94 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEE-ECSSC-------CC-----------SSSC-----CBSCSHHHH-TTCS
T ss_pred             ccCceEEEeccccccccceeeeecccccccc-ccccc-------cc-----------ccee-----eeechhhhh-hccc
Confidence            8999999999999999999999999999984 45431       00           0000     011223333 5889


Q ss_pred             eeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccc
Q 014463          298 VLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDI  348 (424)
Q Consensus       298 IliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~  348 (424)
                      |++-|.-     .+.|+.+....++ --+++..+=+++ ..++ .+.|.++-+. +.=|.
T Consensus        95 iv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV  154 (181)
T d1qp8a1          95 AAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV  154 (181)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESC
T ss_pred             hhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEec
Confidence            9987762     2456666666553 347777777774 5555 3677777664 34443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0069  Score=52.86  Aligned_cols=111  Identities=20%  Similarity=0.306  Sum_probs=72.6

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~  293 (424)
                      +.++.+++|.|+|+|++|+.+|+++...|.+|++. |.....                   .   ......+ +-++++ 
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~-d~~~~~-------------------~---~~~~~~~~~l~ell-   94 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY-DIENKL-------------------P---LGNATQVQHLSDLL-   94 (188)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-CSSCCC-------------------C---CTTCEECSCHHHHH-
T ss_pred             cccccceEEEEeecccchhhhhhhcccccceEeec-cccccc-------------------h---hhhhhhhhhHHHHH-
Confidence            34689999999999999999999999999999844 432110                   0   0011111 123454 


Q ss_pred             cccceeeeccc-----cCcccccccccc-cceEEEecCCCCC-CHHH-HHHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCAL-----GGVLNKENAADV-KAKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA~-----~~~It~~na~~i-~akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~l  349 (424)
                      ..+||++-|.-     .+.|+++....+ +-.+++--|=+++ ..++ .+.|.++-+. +.=|++
T Consensus        95 ~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             hhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            36898887752     345777777776 3468888888885 5555 3567776664 444544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.23  E-value=0.0051  Score=53.51  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          206 ATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       206 ~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+..+.+..|.+|+|+++.|.| .|.+|+.+++.|.++|++|+ +++.+
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~-~~~r~   56 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCGRK   56 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchh-hcccc
Confidence            3445566789999999999999 69999999999999999988 66663

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=96.12  E-value=0.035  Score=47.71  Aligned_cols=110  Identities=25%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-CCCCeeecCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-FQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-~~~~~~i~~~~ll~~~~DIl  299 (424)
                      +||+|-|||..|+.+.|.|.+.+..||+|-|..         |++.+ .|.-+..|+-+ |++....+++.+.--.--  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~---------~~~~~-ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~--   68 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT---------DNKTL-AHLLKYDSIYHRFPGEVAYDDQYLYVDGKA--   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS---------CHHHH-HHHHHCCTTTCSCSSCEEECSSEEEETTEE--
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc---------chhhh-hheeecccccCccccccccccceeEeccee--
Confidence            489999999999999999999999999998752         45444 34444444433 332222222222110001  


Q ss_pred             eeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       300 iPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      |+..-+....+-......+.+|+|..=...|.+..+-..+.|+
T Consensus        69 I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          69 IRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             EEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             EEEEecCChHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence            1111122222223344566777777766666544433333553

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.014  Score=50.72  Aligned_cols=114  Identities=25%  Similarity=0.327  Sum_probs=74.0

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++.|+++.|.|+|++|+.+++++...|.+|++ .|...        +......   .        +.+..+-++++. 
T Consensus        39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~-~d~~~--------~~~~~~~---~--------~~~~~~l~ell~-   97 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA-YDPYV--------SPARAAQ---L--------GIELLSLDDLLA-   97 (184)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECTTS--------CHHHHHH---H--------TCEECCHHHHHH-
T ss_pred             cccccceeeeeccccchhHHHHHHhhhccceEEe-ecCCC--------ChhHHhh---c--------CceeccHHHHHh-
Confidence            4568999999999999999999999999999984 34321        1111111   0        112223345553 


Q ss_pred             ccceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463          295 ECDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY  349 (424)
Q Consensus       295 ~~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l  349 (424)
                      +|||++-|.     ..+.|+.+....++ --+++--+=+++ ..+|- +.|.++-|. ..=|+.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~  161 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF  161 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence            799998775     23456666666653 458888999985 55554 567776664 334543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.88  E-value=0.0022  Score=53.79  Aligned_cols=120  Identities=15%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc---cccc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL---LVHE  295 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l---l~~~  295 (424)
                      ++++|.|.|.|.+|+.+|+.|.+.|.+|+ |.|.+          .+.+.+..++.........  .......   .-..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~-v~dr~----------~~~a~~l~~~~~~~~~~~~--~~~~~~~~~~~i~~   67 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VACRT----------LESAKKLSAGVQHSTPISL--DVNDDAALDAEVAK   67 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEESC----------HHHHHHHHTTCTTEEEEEC--CTTCHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC----------hHHHHHHHhcccccccccc--cccchhhhHhhhhc
Confidence            36899999999999999999999999976 88874          4555555443222111000  0001111   1124


Q ss_pred             cceeeeccccCccccc---ccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccc
Q 014463          296 CDVLVPCALGGVLNKE---NAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANS  352 (424)
Q Consensus       296 ~DIliPaA~~~~It~~---na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNa  352 (424)
                      .|+.+.+.... .+..   .....++.++--....+...+-+....+++..++.+.....
T Consensus        68 ~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  126 (182)
T d1e5qa1          68 HDLVISLIPYT-FHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSA  126 (182)
T ss_dssp             SSEEEECSCGG-GHHHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEECSCBCCH
T ss_pred             cceeEeeccch-hhhHHHHHHHhhccceeecccCcHHHHHHHHHhccccceeehhhhcch
Confidence            55555443221 1111   12223555554443322223345567788888777766554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.85  E-value=0.026  Score=46.96  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=68.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      ++|+++|.|++|+.+++-|.+.| .+|. ++|.+          .+.+.++.++.+       ....++.+.+ .+||++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~-v~~r~----------~~~~~~l~~~~~-------~~~~~~~~~v-~~~Div   61 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IANRG----------AEKRERLEKELG-------VETSATLPEL-HSDDVL   61 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEE-EECSS----------HHHHHHHHHHTC-------CEEESSCCCC-CTTSEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEE-EEeCC----------hhHHHHhhhhcc-------cccccccccc-cccceE
Confidence            57999999999999999777666 6765 77764          455555555432       2333333333 369999


Q ss_pred             eeccccCcccccccccc--cceEEEecCCCCCCHHHHHHHHhC--CceEeccccccc
Q 014463          300 VPCALGGVLNKENAADV--KAKFIIEAANHPTDPEADEILSKK--GVVILPDIYANS  352 (424)
Q Consensus       300 iPaA~~~~It~~na~~i--~akiIvEgAN~p~t~eA~~iL~~r--GI~viPD~laNa  352 (424)
                      |.|--+..+. +-.+.+  .-++|+--+.+..+....+.|...  =+.++|..-+-.
T Consensus        62 ~lavkP~~~~-~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~  117 (152)
T d1yqga2          62 ILAVKPQDME-AACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKI  117 (152)
T ss_dssp             EECSCHHHHH-HHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGG
T ss_pred             EEecCHHHHH-HhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHh
Confidence            9885433221 112222  246888888776666666666432  256667654443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.83  E-value=0.033  Score=48.71  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLV  293 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~  293 (424)
                      +.+++|++|.|.|+|++|+.+|+++...|.+|++ .|..       .-....-.   ..        .....+ -++++ 
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~-~d~~-------~~~~~~~~---~~--------~~~~~~~l~~ll-  101 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDY-FDTH-------RASSSDEA---SY--------QATFHDSLDSLL-  101 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-ECSS-------CCCHHHHH---HH--------TCEECSSHHHHH-
T ss_pred             cceecccceEEeecccchHHHHHHHHhhcccccc-cccc-------ccccchhh---cc--------cccccCCHHHHH-
Confidence            4568899999999999999999999999999984 4432       11111110   00        011111 12333 


Q ss_pred             cccceeeecc-----ccCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eecccc
Q 014463          294 HECDVLVPCA-----LGGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIY  349 (424)
Q Consensus       294 ~~~DIliPaA-----~~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~l  349 (424)
                      ..||+++.+.     ..+.|+.+....++ --+++--|=+++ +.+| .+.|.++-|. ..=|+.
T Consensus       102 ~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~  166 (191)
T d1gdha1         102 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVF  166 (191)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence            4788888765     34567777666663 468888888884 6555 4678777775 444544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.79  E-value=0.043  Score=47.53  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH  294 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~  294 (424)
                      +.++++++|.|.|+|++|+.++++|...|.+|+ ..|..       ..+......   .  .+     ....+.++++ .
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~-~~d~~-------~~~~~~~~~---~--~~-----~~~~~l~~~l-~   99 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLH-YTDRH-------RLPESVEKE---L--NL-----TWHATREDMY-P   99 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSS-------CCCHHHHHH---H--TC-----EECSSHHHHG-G
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEE-EEeec-------ccccccccc---c--cc-----cccCCHHHHH-H
Confidence            567999999999999999999999999999987 44432       112111111   0  01     0111223444 5


Q ss_pred             ccceeeeccc-----cCcccccccccc-cceEEEecCCCCC-CHHHH-HHHHhCCce-Eeccccc
Q 014463          295 ECDVLVPCAL-----GGVLNKENAADV-KAKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIYA  350 (424)
Q Consensus       295 ~~DIliPaA~-----~~~It~~na~~i-~akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~la  350 (424)
                      +||+++-+.-     .+.|+.+....+ +--+++--|-+.+ .++|- +.|.++-|. +.=|+..
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~  164 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF  164 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCC
Confidence            7898887652     345666666666 3458899999884 66654 567776665 5666543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.77  E-value=0.03  Score=48.26  Aligned_cols=34  Identities=38%  Similarity=0.513  Sum_probs=30.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      .||+|-|||..|+.+.|.+.+.+..||+|-|..+
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~   34 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFI   34 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTS
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCc
Confidence            3799999999999999999999999999998754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.76  E-value=0.0059  Score=48.68  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      .+++|++|.|.|.|++|..-++.|.+.|++|+-++.
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            468999999999999999999999999999985554

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.014  Score=50.40  Aligned_cols=54  Identities=17%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..++|..|++..    +++.+.+++|++++|+|-++ ||+-++.+|.++|++|. +++++
T Consensus        16 ~~PcTp~aI~~l----L~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt-~~h~~   70 (166)
T d1b0aa1          16 LRPCTPRGIVTL----LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHRF   70 (166)
T ss_dssp             SCCHHHHHHHHH----HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECSS
T ss_pred             CCCchHHHHHHH----HHHcCcccccceEEEEeccccccHHHHHHHHHhhcccc-ccccc
Confidence            457999988765    55689999999999999765 99999999999999986 77764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.73  E-value=0.011  Score=49.60  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=61.6

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      +|++|+|+|++|+.+++-|.+.|.+++ |++.+          .+.+.++.++.+- .-     .-+++++. .+||+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~-v~~r~----------~~~~~~l~~~~g~-~~-----~~~~~~~~-~~~dvIi   62 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELI-ISGSS----------LERSKEIAEQLAL-PY-----AMSHQDLI-DQVDLVI   62 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEE-EECSS----------HHHHHHHHHHHTC-CB-----CSSHHHHH-HTCSEEE
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEE-EEcCh----------HHhHHhhccccce-ee-----echhhhhh-hccceee
Confidence            579999999999999999999999987 76653          4566666554321 10     11334444 4799999


Q ss_pred             eccccCcccccccccc-cceEEEecCCCCCCHHHHHHHH
Q 014463          301 PCALGGVLNKENAADV-KAKFIIEAANHPTDPEADEILS  338 (424)
Q Consensus       301 PaA~~~~It~~na~~i-~akiIvEgAN~p~t~eA~~iL~  338 (424)
                      -|--...+. +-.+.+ .-++|+.-+.+....+.++.|.
T Consensus        63 lavkp~~~~-~vl~~l~~~~~iis~~agi~~~~l~~~l~  100 (152)
T d2ahra2          63 LGIKPQLFE-TVLKPLHFKQPIISMAAGISLQRLATFVG  100 (152)
T ss_dssp             ECSCGGGHH-HHHTTSCCCSCEEECCTTCCHHHHHHHHC
T ss_pred             eecchHhHH-HHhhhcccceeEecccccccHHHHHhhhc
Confidence            886554332 223333 2345666666544444455553

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.71  E-value=0.0053  Score=53.57  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=29.0

Q ss_pred             eEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      ||+|.|||..|+.++|.|.+. ...||+|.|..
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~   35 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS   35 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            799999999999999999865 58999999975

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.014  Score=48.91  Aligned_cols=103  Identities=19%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeee
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVP  301 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliP  301 (424)
                      ||.++|.|++|+..|+.|.+.|..++ ..|+.           ++..+..++.+..        .+..+.. .++|+.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~-~~~~~~i~   60 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTF-----------EKALRHQEEFGSE--------AVPLERV-AEARVIFT   60 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSST-----------HHHHHHHHHHCCE--------ECCGGGG-GGCSEEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCH-----------HHHHHHHHHcCCc--------ccccccc-cceeEEEe
Confidence            69999999999999999999887654 33331           2333333332221        1111222 35777776


Q ss_pred             ccccCcccccc----ccc-ccceEEEecCCCC--CCHHHHHHHHhCCceEe
Q 014463          302 CALGGVLNKEN----AAD-VKAKFIIEAANHP--TDPEADEILSKKGVVIL  345 (424)
Q Consensus       302 aA~~~~It~~n----a~~-i~akiIvEgAN~p--~t~eA~~iL~~rGI~vi  345 (424)
                      |......-..-    +.. -+-+++++.+...  .+.+..+.|+++|+.++
T Consensus        61 ~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          61 CLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             cccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            65322111111    111 2556777766543  34566788999999987

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.018  Score=49.78  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=45.3

Q ss_pred             CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463          196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+.|..|++..    +++++.+++|++|+|+|-++ ||+-++.+|.++|++|. +++++
T Consensus        19 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt-~~~~~   72 (170)
T d1a4ia1          19 IPCTPKGCLEL----IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHSK   72 (170)
T ss_dssp             CCHHHHHHHHH----HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTT
T ss_pred             CCChHHHHHHH----HHHhCcccccceEEEEecCCccchHHHHHHHhccCceE-EEecc
Confidence            36899887665    56689999999999999755 99999999999999988 77764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.36  E-value=0.095  Score=44.98  Aligned_cols=110  Identities=25%  Similarity=0.310  Sum_probs=59.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccC-CCCeeecCCccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDF-QGGNAMDLNDLLVHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~-~~~~~i~~~~ll~~~~  296 (424)
                      .||+|-|||..|+.+.|.+.+.   ...||+|-|..         |++.+. |.-+..|+-+. +..-.++.+.|.--.-
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~---------~~e~~a-yLlkyDS~hG~~~~~v~~~~~~l~ing~   70 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT---------DTKTLA-HLLKYDSVHKKFPGKVEYTENSLIVDGK   70 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS---------CHHHHH-HHHHCCTTTCCCSSCEEECSSEEEETTE
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc---------cHHHHH-HHHhccccccccCceEEEECCEEEECCE
Confidence            4899999999999999988753   48999998752         455443 44444444332 2222233332221111


Q ss_pred             ceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          297 DVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      -|  +..-+..+.+-......+.+|+|..=-..|.+.-+-..+.|+
T Consensus        71 ~I--~~~~~~~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~Ga  114 (169)
T d1hdgo1          71 EI--KVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGA  114 (169)
T ss_dssp             EE--EEECCSSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             EE--EEEeCCChhhCCccccCCCEEEEecceeccccchhhhccCCC
Confidence            11  111122222223334566777777766666544433334455

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.34  E-value=0.011  Score=50.41  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~  253 (424)
                      +..||+|.|+|++|+..++.|.+. +..+|+|+|.+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            457899999999999999999764 78999999976

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.27  E-value=0.11  Score=44.47  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             eEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITG  254 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G  254 (424)
                      ||+|-|||.+|+.+.|.+.+. ...||+|-|..+
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~   35 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFM   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCC
Confidence            799999999999999988864 689999988754

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.08  E-value=0.0084  Score=51.89  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=28.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~  253 (424)
                      ++|+|-|||.+|+.++|.|.+.+ ..||+|.|..
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~   35 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR   35 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESS
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCC
Confidence            48999999999999999887654 8999999964

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.1  Score=44.72  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||-+|+.++|.+.+. ..+||+|-|.
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            5899999999999999998876 5899999885

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.05  E-value=0.015  Score=50.20  Aligned_cols=33  Identities=15%  Similarity=0.441  Sum_probs=29.0

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      .||+|-|||..|+.+++.|.+ ....||+|.|.+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~   36 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCC
Confidence            589999999999999998875 458999999964

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.03  E-value=0.15  Score=43.80  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC---CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-eecCCcccccc-
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLNDLLVHE-  295 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-~i~~~~ll~~~-  295 (424)
                      +||+|-|||-+|+.+.|.+.+..   ..||+|-|..         |++.+ .|.-+..|+-+..... ....+.++..+ 
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~---------~~~~~-ayLlkyDSvhG~~~~~i~~~~~~~~~ing   70 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG---------GVKQA-SHLLKYDSILGTFDADVKTAGDSAISVDG   70 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT---------CHHHH-HHHHHCCTTTCSCSSCEEECTTSEEEETT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC---------CHHHH-HHHHhcCcccccccceeEecCCcceEECC
Confidence            48999999999999999887543   6899987752         44444 4544444544322222 23333433221 


Q ss_pred             cceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          296 CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       296 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      -.|-+..  +..+.+-+.....+.+|+|..=-..|.+.-+-..++|+
T Consensus        71 ~~I~~~~--~~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~Ga  115 (172)
T d1rm4a1          71 KVIKVVS--DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGA  115 (172)
T ss_dssp             EEEEEEC--CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTC
T ss_pred             EEEEEec--CCChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCC
Confidence            1222221  22223333444567788887766666544443334555

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=95.00  E-value=0.12  Score=44.31  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHC----CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~  252 (424)
                      .||+|-|||.+|+.++|.+.+.    ...||+|-|.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            5899999999999999998764    4689999886

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.94  E-value=0.042  Score=47.34  Aligned_cols=57  Identities=28%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             chhHHHHHHHHH----HHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          197 AATGLGVFFATE----ALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       197 ~aTg~Gv~~~~~----~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|.+.|+...+-    ..+...|...+|.+|.|+| .|.||..+.++....|++|++.+-++
T Consensus         5 eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~   66 (176)
T d1xa0a2           5 EAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA   66 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch
Confidence            355555543322    1133456667899999999 59999999999999999999887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.064  Score=48.12  Aligned_cols=124  Identities=20%  Similarity=0.220  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCC-CCHHHHHHHHHhcCCc
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG-IDVPALLKYKKSNKSL  277 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~G-lDi~~L~~~~~~~g~v  277 (424)
                      ||-=+..++..+++..|.+|++.||++.|.|..|-.++++|.+.+.+=+-..|++|-+++... .+.+.......+....
T Consensus         5 TaaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~   84 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP   84 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcc
Confidence            555556677788888899999999999999999999999999888877779999999986532 2222222222211110


Q ss_pred             ccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCC
Q 014463          278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANH  327 (424)
Q Consensus       278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~  327 (424)
                      ...  ...+  .+.+ ..+|+++-...++.++++-+.+..- .+|---+|-
T Consensus        85 ~~~--~~~l--~~~l-~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          85 ERL--SGDL--ETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             TCC--CSCH--HHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             hhh--hcch--Hhhc-cCcceeccccccccccHHHHhhcCCCCEEEecCCC
Confidence            000  0000  1222 2688888888899999876665433 577777773

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.81  E-value=0.043  Score=45.86  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccccccccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLVHECD  297 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~~~~D  297 (424)
                      ++|+|+|.|.+|..+|+.|.+.|.  +|++ .|.+          .+.+...+ +.+.+..     ..+. ++....++|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~-~D~~----------~~~~~~a~-~~~~~~~-----~~~~~~~~~~~~~d   64 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-YDIN----------PESISKAV-DLGIIDE-----GTTSIAKVEDFSPD   64 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-ECSC----------HHHHHHHH-HTTSCSE-----EESCGGGGGGTCCS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEE-EECC----------hHHHHHHH-Hhhcchh-----hhhhhhhhhccccc
Confidence            369999999999999999999885  6663 4542          33443333 3333322     1222 334456899


Q ss_pred             eeeeccccCcccc---cccccc-cceEEEecCCCC--CCHHHHHHHHhC
Q 014463          298 VLVPCALGGVLNK---ENAADV-KAKFIIEAANHP--TDPEADEILSKK  340 (424)
Q Consensus       298 IliPaA~~~~It~---~na~~i-~akiIvEgAN~p--~t~eA~~iL~~r  340 (424)
                      +++-|.-..++.+   +-.+.+ .-.+|.+-+..-  +..+.++.|.++
T Consensus        65 lIila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~  113 (171)
T d2g5ca2          65 FVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR  113 (171)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred             cccccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc
Confidence            9998875443321   112222 345788877743  334455566655

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.76  E-value=0.032  Score=47.23  Aligned_cols=56  Identities=23%  Similarity=0.310  Sum_probs=39.3

Q ss_pred             chhHHHHHHHHH-HHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          197 AATGLGVFFATE-ALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       197 ~aTg~Gv~~~~~-~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|.+.++...+- .++.+.+.--+|.+|.|.| .|.||..+++++...|+++++++++
T Consensus         2 eAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_           2 EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             chhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            345555544433 2333333223578999988 5999999999999999999987765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.033  Score=47.79  Aligned_cols=129  Identities=12%  Similarity=0.113  Sum_probs=77.8

Q ss_pred             HHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC-ee--e
Q 014463          210 LLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG-NA--M  286 (424)
Q Consensus       210 ~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~-~~--i  286 (424)
                      .++..|.++++++|.|.|.|.+|+.++..|.+.|++-+.|++++     ++  ..+++....++.+  ..++.. ..  +
T Consensus         8 ~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~-----~~--~~~~~~~l~~~~~--~~~~~~~~~~~~   78 (182)
T d1vi2a1           8 AIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----DE--FFDKALAFAQRVN--ENTDCVVTVTDL   78 (182)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-----ST--THHHHHHHHHHHH--HHSSCEEEEEET
T ss_pred             HHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc-----hH--HHHHHHHHHHHHH--hhcCcceEeeec
Confidence            35667899999999999999999999999999999777788874     22  2334443332210  011110 11  1


Q ss_pred             cC-Cccc--ccccceeeeccccCcc---c---ccccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEeccc
Q 014463          287 DL-NDLL--VHECDVLVPCALGGVL---N---KENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVILPDI  348 (424)
Q Consensus       287 ~~-~~ll--~~~~DIliPaA~~~~I---t---~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viPD~  348 (424)
                      .. +++.  -.++|++|=|.--+.-   .   ..+...+ +..++++-.-+|. |+= -+..+++|..++...
T Consensus        79 ~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~l-l~~a~~~g~~~i~Gl  150 (182)
T d1vi2a1          79 ADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKL-LQQAQQAGCKTIDGY  150 (182)
T ss_dssp             TCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHH-HHHHHTTTCEEECHH
T ss_pred             ccccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHH-HHHHHHCcCeEeccH
Confidence            11 1121  2478999988642211   1   1122333 4568999987775 543 355678888876543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.48  E-value=0.053  Score=46.63  Aligned_cols=72  Identities=29%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc---cc
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VH  294 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll---~~  294 (424)
                      .+..+|+|+|.|.+|..+++.....|++|. +.|.+          .+.+.++....+.-..    ...++++.+   -.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~-~~D~~----------~~~l~~l~~~~~~~~~----~~~~~~~~l~~~~~   94 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFDIN----------VERLSYLETLFGSRVE----LLYSNSAEIETAVA   94 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHHHGGGSE----EEECCHHHHHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEE-EEeCc----------HHHHHHHHHhhcccce----eehhhhhhHHHhhc
Confidence            456799999999999999999999999988 67763          5555554433211111    112333222   24


Q ss_pred             ccceeeeccc
Q 014463          295 ECDVLVPCAL  304 (424)
Q Consensus       295 ~~DIliPaA~  304 (424)
                      ++||+|=|++
T Consensus        95 ~aDivI~aal  104 (168)
T d1pjca1          95 EADLLIGAVL  104 (168)
T ss_dssp             TCSEEEECCC
T ss_pred             cCcEEEEeee
Confidence            7999998886

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=94.39  E-value=0.21  Score=42.71  Aligned_cols=33  Identities=24%  Similarity=0.462  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~  253 (424)
                      .||+|-|||.+|+.+.|.+.+ ...+||+|-|..
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~   35 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPF   35 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSS
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999999999999997764 468999999864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.28  E-value=0.099  Score=44.34  Aligned_cols=107  Identities=18%  Similarity=0.278  Sum_probs=65.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC-Ceeec-CCccc-cccc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG-GNAMD-LNDLL-VHEC  296 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~-~~~i~-~~~ll-~~~~  296 (424)
                      .||+|+|+|++|+..++.|... +.+|+||+|.+          .+...+..++.+    ++. .+..+ .++++ +.++
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~~i   67 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRS----------LEKAKAFATANN----YPESTKIHGSYESLLEDPEI   67 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS----------HHHHHHHHHHTT----CCTTCEEESSHHHHHHCTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC----------ccccccchhccc----cccceeecCcHHHhhhcccc
Confidence            5899999999999999888765 78999999873          444444444322    222 22222 24565 4578


Q ss_pred             ceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHH---HHHhCCceEe
Q 014463          297 DVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADE---ILSKKGVVIL  345 (424)
Q Consensus       297 DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~---iL~~rGI~vi  345 (424)
                      |+++-|. +...+.+.+..   -+..+++|-   |+  + .++++   +.+++|+.+.
T Consensus        68 D~v~I~t-p~~~h~~~~~~~l~~g~~v~~EK---P~~~~~~e~~~l~~~~~~~~~~~~  121 (184)
T d1ydwa1          68 DALYVPL-PTSLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM  121 (184)
T ss_dssp             CEEEECC-CGGGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             ceeeecc-cchhhcchhhhhhhccceeeccc---ccccCHHHHHHHHHHHHhhCCEEE
Confidence            9988663 33333333322   366788885   53  3 34443   4556777653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.044  Score=49.22  Aligned_cols=76  Identities=24%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc----
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND----  290 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~----  290 (424)
                      .+|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+          .+++.+..++...+..+. . -+++.+    
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~----------~~~l~~~~~~~~~~~~~~-~-Dv~~~~~v~~   67 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVV-AVTRT----------NSDLVSLAKECPGIEPVC-V-DLGDWDATEK   67 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHHSTTCEEEE-C-CTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHhcCCCeEEE-E-eCCCHHHHHH
Confidence            3689999999995 7799999999999999998 55653          456666655543332221 0 011111    


Q ss_pred             ccc--cccceeeeccc
Q 014463          291 LLV--HECDVLVPCAL  304 (424)
Q Consensus       291 ll~--~~~DIliPaA~  304 (424)
                      +++  -..|+||-+|-
T Consensus        68 ~~~~~g~iDilVnnAg   83 (242)
T d1cyda_          68 ALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             HHHHcCCCeEEEECCc
Confidence            111  36899999884

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.06  E-value=0.021  Score=51.93  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      +|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+          .+++.+..++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~----------~~~~~~~~~~   48 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVV-LADVL----------DEEGAATARE   48 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHT
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHH
Confidence            589999999995 6799999999999999987 77753          4566665554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.027  Score=46.71  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      ..++|++|.|+|.|+||..-++.|.+.|++|+-|+
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            35899999999999999999999999999998564

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.057  Score=46.55  Aligned_cols=52  Identities=19%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHHHhCC---------CCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          198 ATGLGVFFATEALLAEHGK---------SISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~---------~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      .|.+|++..    |+++++         +++|++++|+|=+ .||+-+|.+|.++|+.|. +++++.
T Consensus         2 cTp~gv~~L----L~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt-~~~~~~   63 (171)
T d1edza1           2 CTPLAIVKI----LEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNN   63 (171)
T ss_dssp             HHHHHHHHH----HHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSE
T ss_pred             CcHHHHHHH----HHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEE-Eecccc
Confidence            577776655    444444         8999999999955 589999999999999986 888753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.99  E-value=0.19  Score=42.79  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=30.7

Q ss_pred             CCCCeEEEE--ecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQ--GFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIq--GfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|.|+  |.|.||..+.++....|++||+++..+
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~   64 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDR   64 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecc
Confidence            356789998  579999999999999999999988653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.88  E-value=0.13  Score=43.20  Aligned_cols=109  Identities=14%  Similarity=0.087  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccc----c-
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDL----L-  292 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~l----l-  292 (424)
                      .|.+|.|.|.|.+|..++.++...|++.|.++|++          .+++. ..++.+.      ...++. ++.    + 
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~----------~~k~~-~~~~~ga------~~~i~~~~~~~~~~~~   94 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK----------EEKLK-LAERLGA------DHVVDARRDPVKQVME   94 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS----------HHHHH-HHHHTTC------SEEEETTSCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccch----------hHHHH-HHhhccc------ceeecCcccHHHHHHH
Confidence            57899999999999999999988898666677874          23333 3333221      112211 221    1 


Q ss_pred             ---ccccceeeeccccCcccccccc--cccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463          293 ---VHECDVLVPCALGGVLNKENAA--DVKAKFIIEAANHPTDPEADEILSKKGVVIL  345 (424)
Q Consensus       293 ---~~~~DIliPaA~~~~It~~na~--~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi  345 (424)
                         ...+|+.|.|......-+...+  +-..++|.=|...+++-.... +..|.+.+.
T Consensus        95 ~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~-l~~k~~~i~  151 (172)
T d1h2ba2          95 LTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIR-VISSEVSFE  151 (172)
T ss_dssp             HTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCCCCCHHH-HHHTTCEEE
T ss_pred             hhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccccCCHHH-HHhCCcEEE
Confidence               2358999998765432122222  235677776654443322222 334555543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.79  E-value=0.35  Score=41.98  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=28.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC-----CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG-----GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G-----akVVaVsD~~  253 (424)
                      .||+|-|||-+|+.+.|.+.+.+     ..||+|-|..
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMN   40 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESC
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCC
Confidence            58999999999999999887754     4889998874

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=93.67  E-value=0.34  Score=41.37  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~  252 (424)
                      .||+|-|||..|+.+.|.+.+. ..+|++|-|.
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            4899999999999999988765 6899999886

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.67  E-value=0.11  Score=41.67  Aligned_cols=40  Identities=30%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCcee
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIK  257 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~  257 (424)
                      +.++++|+|+|.|.+|..+|..|.+.|.+|. +.+....+.
T Consensus        27 ~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vt-lie~~~~~l   66 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT-VIDILDRPL   66 (123)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSTT
T ss_pred             ccCCCEEEEECChHHHHHHHHHhhccceEEE-EEEecCccc
Confidence            3567899999999999999999999999976 666654443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.60  E-value=0.053  Score=44.68  Aligned_cols=31  Identities=32%  Similarity=0.430  Sum_probs=28.2

Q ss_pred             CeEEEE-ecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQ-GFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIq-GfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +||+|. |.|++|+.+|+.|.+.|++|+ +.++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~-l~~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            589999 789999999999999999998 6676

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.087  Score=44.09  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++.+.. .|.+|+|+|.|.||..+++++...|+++|+++++
T Consensus        24 ~~~~~~-~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          24 RHWQAG-PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             HHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHhCCC-CCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            443443 6889999999999999999999999999965544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.46  E-value=0.14  Score=42.75  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             CeEEEEecChHHHH-HHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGFGNVGSW-AAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~-~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      .||+|+|+|+.|+. .+..|.+. +..++ ++|.+          .+.+.+..++.+....|     -+-+++++.++|+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~~----------~~~~~~~~~~~~~~~~~-----~~~~~ll~~~iD~   65 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRN----------PKVLGTLATRYRVSATC-----TDYRDVLQYGVDA   65 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSC----------HHHHHHHHHHTTCCCCC-----SSTTGGGGGCCSE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEECC----------HHHHHHHHHhccccccc-----ccHHHhcccccce
Confidence            58999999999976 56677655 44554 77753          45555555543322122     2336777778898


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCCCHHHHH---HHHhCCceEe
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADE---ILSKKGVVIL  345 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~---iL~~rGI~vi  345 (424)
                      ++=|. .+..+.+.+..   -+..+++|===.....++.+   ...++|+.+.
T Consensus        66 V~I~t-p~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~  117 (167)
T d1xeaa1          66 VMIHA-ATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY  117 (167)
T ss_dssp             EEECS-CGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ecccc-cccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            88663 44444444333   25568888511112245554   3557887653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.38  E-value=0.028  Score=51.45  Aligned_cols=46  Identities=22%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      +|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+          .++|.+..++
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~----------~~~l~~~~~~   48 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVA-VLDKS----------AERLAELETD   48 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHH
Confidence            489999999995 8999999999999999988 66653          4566555544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.088  Score=44.13  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++.+.. .|.+|+|+|.|.||..+++++...|++|++++.+
T Consensus        20 l~~~~~~-~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~   60 (168)
T d1piwa2          20 LVRNGCG-PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRS   60 (168)
T ss_dssp             HHHTTCS-TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             HHHhCcC-CCCEEEEECCCCcchhHHHHhhhccccccccccc
Confidence            3444443 6789999999999999999998999999975444

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.22  E-value=0.039  Score=45.70  Aligned_cols=106  Identities=20%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV  300 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli  300 (424)
                      +||+|+|+|++|+.+|+.|++.|..|+ +.|.+-          ......+.+...+.       -+.+++ ..+||+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~-~~~~~~----------~~~~~~~~~~~~~~-------~~~~e~-~~~~diIi   61 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVV-TSLEGR----------SPSTIERARTVGVT-------ETSEED-VYSCPVVI   61 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEE-ECCTTC----------CHHHHHHHHHHTCE-------ECCHHH-HHTSSEEE
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEE-EEcCch----------hHHHHHhhhccccc-------ccHHHH-HhhcCeEE
Confidence            589999999999999999999999987 444321          11122222211111       133444 35799999


Q ss_pred             eccccCccccccccc---ccceEEEecCCCC--CCHHHHHHHHhCCceEec
Q 014463          301 PCALGGVLNKENAAD---VKAKFIIEAANHP--TDPEADEILSKKGVVILP  346 (424)
Q Consensus       301 PaA~~~~It~~na~~---i~akiIvEgAN~p--~t~eA~~iL~~rGI~viP  346 (424)
                      -|--.... .+.+..   ..-+++++.++..  .+.+..+.+.++|.+-.|
T Consensus        62 ~~v~~~~~-~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~~~d~~  111 (152)
T d1i36a2          62 SAVTPGVA-LGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAA  111 (152)
T ss_dssp             ECSCGGGH-HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEecCchH-HHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccCCCccc
Confidence            88654332 222222   1225677766543  234445566666644333

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.13  E-value=0.11  Score=43.18  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=32.3

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +++.+.. .|.+|+|+|.|.||..++.++...|++||+ +|.
T Consensus        19 ~~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~-v~~   58 (170)
T d1e3ja2          19 CRRAGVQ-LGTTVLVIGAGPIGLVSVLAAKAYGAFVVC-TAR   58 (170)
T ss_dssp             HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEE-EES
T ss_pred             HHHhCCC-CCCEEEEEcccccchhhHhhHhhhcccccc-cch
Confidence            3444443 567999999999999999999999999995 454

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.033  Score=52.11  Aligned_cols=118  Identities=16%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC-------EEEEEEcCCCceeCCC--CCCHH
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG-------KVVAVSDITGAIKNPN--GIDVP  265 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga-------kVVaVsD~~G~i~~~~--GlDi~  265 (424)
                      ||-=+..++..+++..|++|+..||+|.|.|..|-.++++|...    |.       +|+ +.|++|-+++..  .++..
T Consensus         4 Ta~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~-lvD~~Glv~~~r~~~~~~~   82 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGRKAKIDSY   82 (294)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTCSSCCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE-EEeCCCCccCCCCcccHHH
Confidence            55556677788888889999999999999999999999987543    42       466 899999998753  23321


Q ss_pred             HHHHHHHhcCCcccCCCCeeecCCccc----ccccceeeecc-ccCcccccccccc----cceEEEecCCC
Q 014463          266 ALLKYKKSNKSLNDFQGGNAMDLNDLL----VHECDVLVPCA-LGGVLNKENAADV----KAKFIIEAANH  327 (424)
Q Consensus       266 ~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~DIliPaA-~~~~It~~na~~i----~akiIvEgAN~  327 (424)
                      +  +.+.+       ...+.. ...|.    .++.|+||=+. -++.+|++-++.+    +-.+|---+|-
T Consensus        83 k--~~~a~-------~~~~~~-~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNP  143 (294)
T d1pj3a1          83 Q--EPFTH-------SAPESI-PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP  143 (294)
T ss_dssp             T--GGGCB-------CCCSSC-CSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             H--HHhhc-------cccccc-hhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCC
Confidence            1  11110       000000 11232    24889999887 4678898877643    44688888884

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.99  E-value=0.05  Score=46.96  Aligned_cols=33  Identities=30%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|||+|+|.|..|..+|..|.++|.+|+ |-|.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~-vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVT-VFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEE-EECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEE-EEeCC
Confidence            6899999999999999999999999987 88854

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.97  E-value=0.034  Score=46.75  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      ++||+|+|.|+.|..+|..|.++|++-|.|.|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            68999999999999999999999996344778653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.087  Score=44.61  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDI  252 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  252 (424)
                      +++.+.--+|.+|.|+|.|.||..+++++...|+ +|+ ++|.
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi-~~~~   61 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVI-VIAG   61 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEE-EEES
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheeccccccccccc-cccc
Confidence            3444433468999999999999999999999998 677 5555

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.70  E-value=0.15  Score=40.68  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCce
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI  256 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i  256 (424)
                      ++++++|+|.|-+|-.+|..|+++|.+|. +.+....+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt-li~~~~~~   65 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVS-LVETQPRL   65 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSST
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEE-EEeecccc
Confidence            45899999999999999999999999987 66655444

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.59  E-value=0.17  Score=39.70  Aligned_cols=44  Identities=18%  Similarity=0.105  Sum_probs=35.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCH
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV  264 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi  264 (424)
                      ..+++|+|.|.|.+|.-+|..|++.|.+|. +.+..-.+.  .++|.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt-~i~~~~~~l--~~~d~   63 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTV-MLVRTEPLK--LIKDN   63 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCTTT--TCCSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhhe-Eeeccchhh--ccccc
Confidence            457899999999999999999999999987 666554443  25664

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.57  E-value=0.04  Score=49.81  Aligned_cols=46  Identities=20%  Similarity=0.295  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS  273 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~  273 (424)
                      .|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.          +.+++.+..++
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r----------~~~~l~~~~~~   48 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVA-IADI----------NLEAARATAAE   48 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEE-EEES----------CHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHHH
Confidence            489999999995 8899999999999999988 6775          34566665554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.51  E-value=0.15  Score=42.42  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=27.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC--CEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~  252 (424)
                      +.+||+|+|.|+||+.+|..|...|  ..|+ ..|.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elv-L~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFV-IVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEE-Eeec
Confidence            4579999999999999999998777  3665 5665

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.14  Score=38.18  Aligned_cols=40  Identities=35%  Similarity=0.466  Sum_probs=33.8

Q ss_pred             HhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          213 EHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       213 ~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +.+...++.+|.|.| .|.||..+.+++...|++|++++-+
T Consensus        25 ~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s   65 (77)
T d1o8ca2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (77)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             hhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC
Confidence            455556788999977 5999999999999999999988765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.31  E-value=0.19  Score=42.52  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             CCCeEEEEecChHHHH-HHHHHHHCC--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-c
Q 014463          219 SNMKFAIQGFGNVGSW-AAKFFHEHG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-H  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~-~a~~L~~~G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~  294 (424)
                      +..||+|+|+|..|+. .+..+.+.+  .+|++|+|.+          .+...+..++.+....|     -+-+++++ .
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~----------~~~~~~~~~~~~~~~~~-----~~~~ell~~~   66 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT----------RSHAEEFAKMVGNPAVF-----DSYEELLESG   66 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS----------HHHHHHHHHHHSSCEEE-----SCHHHHHHSS
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc----------Hhhhhhhhcccccccee-----eeeecccccc
Confidence            4578999999999986 467776543  6899999874          44554444443221111     12256664 4


Q ss_pred             ccceeeeccccCccccccccc---ccceEEEecCCCCC--C-HHHHHH---HHhCCceE
Q 014463          295 ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPT--D-PEADEI---LSKKGVVI  344 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~--t-~eA~~i---L~~rGI~v  344 (424)
                      ++|+++-|. .+..+.+.+..   -+..+++|=   |+  + .++.++   .+++|+.+
T Consensus        67 ~id~v~I~t-p~~~h~~~~~~al~~gk~V~~EK---Pl~~~~~e~~~l~~~~~~~~~~~  121 (181)
T d1zh8a1          67 LVDAVDLTL-PVELNLPFIEKALRKGVHVICEK---PISTDVETGKKVVELSEKSEKTV  121 (181)
T ss_dssp             CCSEEEECC-CGGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             ccceeeccc-cccccccccccccccchhhhcCC---CCcCCHHHHHHHHHHHHHhCCeE
Confidence            689888763 34444444433   255688886   53  2 344443   44566654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.30  E-value=0.053  Score=44.66  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=29.4

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .=++|+|+| .|++|+.+|+.|.++|..|. +.|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~~   42 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRE   42 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-ecccc
Confidence            346999999 99999999999999999987 66653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.071  Score=43.79  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +||+|.|.|++|+.++..|++.|..|..+.-
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r   31 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            5899999999999999999999999986543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.16  E-value=0.061  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~-~~~r~   39 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVV-FGDIL   39 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            89999999995 7899999999999999987 67763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.15  Score=45.54  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC----c
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN----D  290 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~----~  290 (424)
                      ..|+||++.|.|. +.+|+.+|+.|++.|++|+ ++|.+          .++|.+..++.+.+..+. . -+++.    +
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~-~~~r~----------~~~l~~~~~~~~~~~~~~-~-Dv~d~~~v~~   69 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVV-AVSRT----------QADLDSLVRECPGIEPVC-V-DLGDWEATER   69 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC----------HHHHHHHHHHSTTCEEEE-C-CTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECC----------HHHHHHHHHhcCCCeEEE-E-eCCCHHHHHH
Confidence            4689999999995 8899999999999999988 56653          456666555543322111 0 01111    1


Q ss_pred             ccc--cccceeeeccc
Q 014463          291 LLV--HECDVLVPCAL  304 (424)
Q Consensus       291 ll~--~~~DIliPaA~  304 (424)
                      +++  -+.|+||-+|.
T Consensus        70 ~~~~~g~iDilVnnAg   85 (244)
T d1pr9a_          70 ALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             HHTTCCCCCEEEECCC
T ss_pred             HHHHhCCceEEEeccc
Confidence            222  26788888874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.03  E-value=0.2  Score=41.42  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .|.+|+|.|.|.||..++.++...|++|+++ |+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~-~~   59 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAI-DI   59 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-ES
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCcccee-cc
Confidence            5789999999999999999999999999965 54

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.87  E-value=0.25  Score=38.72  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV  264 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi  264 (424)
                      .++++|.|.|.+|-.+|..|++.|.+|. +.+....+..  .+|.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vt-lve~~~~il~--~~d~   62 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVS-VVEARERILP--TYDS   62 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSSSSSST--TSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceE-EEeeeccccc--cccc
Confidence            4799999999999999999999999976 7777665552  3563

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.69  E-value=0.14  Score=43.39  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|+|+|.|.||..++..+...|++.|.++|++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            467899999999999999999999998555577874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=0.21  Score=40.93  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             CCCCCCCeEEEEecChHHHHHHHHHHHCCCE
Q 014463          215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGK  245 (424)
Q Consensus       215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak  245 (424)
                      +....|++|+|+|.|++|.-+|+.+.+.|++
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            4456789999999999999999999998875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.68  E-value=0.15  Score=40.05  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=34.6

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      .++++|+|.|.+|.-+|..|.+.|.+|. +.+....+..  ++|.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~il~--~~d~~   64 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVT-ILEGAGEILS--GFEKQ   64 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSSST--TSCHH
T ss_pred             CCeEEEECCCccceeeeeeecccccEEE-EEEecceecc--cccch
Confidence            3799999999999999999999999987 6666555542  46643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.67  E-value=0.17  Score=42.89  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|+|+|.|.||..++..+...|++.|-++|++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            467899999999999999999999999766688874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.49  E-value=0.15  Score=44.44  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +...||+|+|.|..|..+|..|.++|.+|+ |-|.+
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~-v~Er~   36 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVD-VYERS   36 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            456799999999999999999999999988 88864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.45  E-value=0.16  Score=43.06  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  253 (424)
                      +|.+|+|.|.|.||..+++++...|+ +|+ ++|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi-~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRII-GVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEE-EECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccc-cccch
Confidence            57899999999999999999999998 455 67764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.12  Score=45.71  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++||||++.|.|. +.+|..+|+.|+++|++|+ ++|.+
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~-~~~r~   38 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAV-LLDLP   38 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEECT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            4699999999995 7799999999999999988 66754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.19  E-value=0.17  Score=42.77  Aligned_cols=119  Identities=16%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463          220 NMKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD  297 (424)
Q Consensus       220 g~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D  297 (424)
                      ..+|+|.|+ |.+|+.+++.+.+ .+.++++..|+.+.-+  -|-|+.++..       . ...+....++-+.+..+||
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~--~g~d~~~~~~-------~-~~~~~~~~~~~~~~~~~~D   73 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGELAG-------A-GKTGVTVQSSLDAVKDDFD   73 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTCSSS-------S-SCCSCCEESCSTTTTTSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh--ccchhhhhhc-------c-ccCCceeeccHHHHhcccc
Confidence            468999995 9999999998865 5889999888764321  1333222110       0 0011112223334456899


Q ss_pred             eeeeccccCccc--ccccccccceEEEecCCCCCCHHHHHHHHh----CCceEeccccc
Q 014463          298 VLVPCALGGVLN--KENAADVKAKFIIEAANHPTDPEADEILSK----KGVVILPDIYA  350 (424)
Q Consensus       298 IliPaA~~~~It--~~na~~i~akiIvEgAN~p~t~eA~~iL~~----rGI~viPD~la  350 (424)
                      |+|.-..+....  -+-+.+.+..+|++-.-  ++++-.+.|++    -+|++.|-+..
T Consensus        74 ViIDFs~p~~~~~~~~~a~~~~~~~ViGTTG--~~~~~~~~i~~~a~~ipi~~apN~Sl  130 (162)
T d1diha1          74 VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG--FDEAGKQAIRDAAADIAIVFAANFSM  130 (162)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred             eEEEeccHHHHHHHHHHHHhccceeEEecCC--CcHHHHHHHHHHcCCCCEEEEccccH
Confidence            999887654332  12233457788886443  46655554543    45677777653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.18  E-value=0.025  Score=48.99  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|-+|+..|..+...|.+|+ +.|.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~-l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPIL-MKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEE-EEECC
Confidence            479999999999999999999999988 77763

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.21  Score=44.73  Aligned_cols=50  Identities=18%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463          215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK  275 (424)
Q Consensus       215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g  275 (424)
                      |..|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.          +.+.+.+..++.+
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~-i~~r----------~~~~~~~~~~~~~   51 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVV-ICDK----------DESGGRALEQELP   51 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEES----------CHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHHHhcC
Confidence            45689999999995 8899999999999999988 6775          3456666665543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.05  E-value=0.3  Score=38.62  Aligned_cols=42  Identities=17%  Similarity=0.119  Sum_probs=34.5

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV  264 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi  264 (424)
                      .++|+|.|.|.+|-.+|..|++.|.+|. +.+....+.  .++|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~il--~~~d~   63 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSY-IFARGNRIL--RKFDE   63 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSSSSC--TTSCH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccce-eeehhcccc--ccccH
Confidence            4799999999999999999999999987 777665554  24563

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.99  E-value=0.34  Score=38.28  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      .+-..++++|+|.|.+|--+|..|.+.|.+|. +......+. | ++|.+
T Consensus        18 l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vt-iv~~~~~ll-~-~~d~e   64 (119)
T d3lada2          18 FQNVPGKLGVIGAGVIGLELGSVWARLGAEVT-VLEAMDKFL-P-AVDEQ   64 (119)
T ss_dssp             CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSSS-T-TSCHH
T ss_pred             cccCCCeEEEECCChHHHHHHHHHHHcCCceE-EEEeecccC-C-cccch
Confidence            34344799999999999999999999999987 555444342 2 45644

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.98  E-value=0.18  Score=42.70  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             HHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          211 LAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |.+.|...++.+|.|+| .|.||..++++....|++||+++-+.
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~   58 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR   58 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH
Confidence            44566666788899999 59999999999999999999887664

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.95  E-value=0.26  Score=39.09  Aligned_cols=42  Identities=24%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      +++++|+|.|.+|--+|..|++.|.+|. +.+..-.+.   ++|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~l~---~~d~~   73 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVK-LIHRGAMFL---GLDEE   73 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEE-EECSSSCCT---TCCHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEE-EEecccccc---CCCHH
Confidence            3699999999999999999999999987 667655443   36644

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.63  E-value=0.25  Score=41.39  Aligned_cols=35  Identities=23%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -+|.+|.|+|. |.||+.+++++...|++|++++++
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~   61 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR   61 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccccccccccc
Confidence            47889999995 999999999999999999987765

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.52  E-value=0.14  Score=45.75  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.|..   ..|+.+|+.|.+.|++|+ ++|.+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~-i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVA-LSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeCc
Confidence            57999999999964   499999999999999987 77754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.45  E-value=0.14  Score=46.43  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.| .+.+|+.+|+.|.+.|++|+ ++|.+
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vi-i~~r~   58 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCV-IASRK   58 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECC
Confidence            69999999999 58999999999999999998 67763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.42  E-value=0.2  Score=42.12  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|+|.|.|.+|..++.++...|+++|.++|.+
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            468899999999999999999999999888888864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.37  E-value=0.15  Score=46.08  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=32.2

Q ss_pred             CCCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463          215 GKSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       215 g~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -.+|+||++.|.|.+   -.|..+|+.|.++|++|+ +++.
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vv-i~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEIL-VGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEE-EEEE
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence            357999999999975   499999999999999997 6664

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.29  E-value=0.26  Score=44.09  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~-i~~r   37 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVV-VASR   37 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            689999999995 7799999999999999987 7776

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.19  E-value=0.54  Score=39.77  Aligned_cols=113  Identities=18%  Similarity=0.261  Sum_probs=64.2

Q ss_pred             CCeEEEEe-cChHHHHHHHHHHHCCCE-EEEEEcCCCceeCCCCCCHHHHHHHHHhcCC--cccCCCCeeecC-Cccccc
Q 014463          220 NMKFAIQG-FGNVGSWAAKFFHEHGGK-VVAVSDITGAIKNPNGIDVPALLKYKKSNKS--LNDFQGGNAMDL-NDLLVH  294 (424)
Q Consensus       220 g~~vaIqG-fGnVG~~~a~~L~~~Gak-VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~--v~~~~~~~~i~~-~~ll~~  294 (424)
                      +.+|.|+| .|.||+.++++....|++ |++++++.           ++..+..++.+.  +.+|........ .++-..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~-----------e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ-----------EKCLFLTSELGFDAAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH-----------HHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTT
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchH-----------HHHhhhhhcccceEEeeccchhHHHHHHHHhcc
Confidence            47899999 599999999999999985 55555552           333333333221  222221110000 011133


Q ss_pred             ccceeeeccccCcccccccccc--cceEEEecC----------CCCCCHHHHHHHHhCCceE
Q 014463          295 ECDVLVPCALGGVLNKENAADV--KAKFIIEAA----------NHPTDPEADEILSKKGVVI  344 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~i--~akiIvEgA----------N~p~t~eA~~iL~~rGI~v  344 (424)
                      .+|+++.|..+.. .+.+.+.+  ..++|.=|+          ..+..+....++..|++.+
T Consensus       100 GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~  160 (187)
T d1vj1a2         100 GVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITR  160 (187)
T ss_dssp             CEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEE
T ss_pred             CceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEE
Confidence            5999999976443 34444444  556776553          2234455566788888864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.18  E-value=0.17  Score=45.62  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.| -+.+|+.+|+.|+++|++|+ ++|.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~-i~~r~   39 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVY-TCSRN   39 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            368999999999 58899999999999999988 66653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.07  E-value=0.36  Score=39.55  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +..+.. .|.+|+|.|.|.||..++.++...|++|+ ++|.
T Consensus        21 ~~~~~~-~g~~vlv~G~G~iG~~a~~~a~~~g~~v~-~~~~   59 (168)
T d1rjwa2          21 KVTGAK-PGEWVAIYGIGGLGHVAVQYAKAMGLNVV-AVDI   59 (168)
T ss_dssp             HHHTCC-TTCEEEEECCSTTHHHHHHHHHHTTCEEE-EECS
T ss_pred             HHhCCC-CCCEEEEeecccchhhhhHHHhcCCCeEe-ccCC
Confidence            334554 57899999999999999999999999987 5555

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.03  E-value=0.13  Score=44.50  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=28.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|-||..+|..|+++|.+|+ ..|.+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~-g~D~n   32 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVI-GVDVS   32 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEE-EECSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEE-EEeCC
Confidence            579999999999999999999999998 45653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.99  E-value=0.23  Score=42.71  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +||+|.|.|+.|..+|..|.+.|.+|. +-+.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~-l~~r   38 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVC-VWHM   38 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEE-EECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEE-EEEe
Confidence            479999999999999999999998876 4443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.96  E-value=0.13  Score=46.29  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~~   38 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVA-FSDI   38 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            89999999985 7799999999999999987 7775

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.94  E-value=0.3  Score=43.86  Aligned_cols=35  Identities=11%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   40 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVY-TCSR   40 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            689999999996 6799999999999999988 6665

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.81  E-value=0.26  Score=39.18  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=35.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      .++++|+|.|.+|--+|..|++.|.+|. |.+....+. | ++|.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vt-vi~~~~~~l-~-~~d~~   67 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVT-VVEFASEIV-P-TMDAE   67 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHH
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEE-EEEEccccC-c-hhhhc
Confidence            4799999999999999999999999987 777766554 3 46644

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.32  Score=43.41  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+|+++.|.|. +.+|+.+|+.|+++|++|+ ++|.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~-l~~r~   40 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLV-LWDIN   40 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            4699999999996 6699999999999999988 77763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.37  Score=38.30  Aligned_cols=42  Identities=17%  Similarity=0.113  Sum_probs=34.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      ++++|+|.|.+|.-+|..|.+.|.+|. +.+....+. | ++|.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vt-lv~~~~~~l-~-~~d~~   64 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTS-LMIRHDKVL-R-SFDSM   64 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSC-T-TSCHH
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEE-EEeeccccc-c-chhhH
Confidence            799999999999999999999999987 777665554 2 36644

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.72  E-value=0.24  Score=44.10  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+ ++|.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv-~~~r~   37 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVI-GTATS   37 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            589999999884 7899999999999999998 66663

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.70  E-value=0.15  Score=45.00  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -..++|+|+|.|..|..+|..|.++|.+|+ |-|.+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~-vlE~~   62 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVT-VLEAS   62 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEE-EECSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            455799999999999999999999999987 88853

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=0.27  Score=41.93  Aligned_cols=43  Identities=35%  Similarity=0.464  Sum_probs=35.2

Q ss_pred             HHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          211 LAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.+.+...++.+|.|+| .|.||..+.++....|++||+++-+.
T Consensus        23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            44566666667898887 59999999999999999999887663

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=89.62  E-value=0.39  Score=39.60  Aligned_cols=32  Identities=38%  Similarity=0.453  Sum_probs=25.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      .||+|+|.|+||+++|..|...|.  .++ +.|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~Elv-L~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIV-LEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEE-EEEec
Confidence            479999999999999998887774  566 66653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.49  E-value=0.45  Score=37.73  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=26.3

Q ss_pred             CeEEEEec----ChHHHHHHHHHHHCCCEEEEE
Q 014463          221 MKFAIQGF----GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       221 ~~vaIqGf----GnVG~~~a~~L~~~GakVVaV  249 (424)
                      ++|||.|.    ++.|..+.+.|.+.|++|+.|
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pV   34 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPV   34 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEE
Confidence            58999994    889999999999999999877

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=89.48  E-value=0.18  Score=43.19  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .++|+|+|.|-+|..+|..|+++|.+|+ |.|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~-vier   37 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVH-ILAR   37 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEE-EEeC
Confidence            4689999999999999999999999987 7774

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.48  E-value=0.59  Score=38.21  Aligned_cols=95  Identities=18%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             eEEEEe-cChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          222 KFAIQG-FGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       222 ~vaIqG-fGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      ||+|.| .|.+|+.+++.+. +.+.++++..|..-        ++.                        .+...++||+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~--------~~~------------------------~~~~~~~Dvv   48 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD--------PLS------------------------LLTDGNTEVV   48 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC--------CTH------------------------HHHTTTCSEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC--------chh------------------------hhccccCCEE
Confidence            689999 5999999999875 46789998887521        111                        1223468999


Q ss_pred             eeccccCcc--cccccccccceEEEecCCCCCCHHHHHHHH-----hCC--ceEeccccc
Q 014463          300 VPCALGGVL--NKENAADVKAKFIIEAANHPTDPEADEILS-----KKG--VVILPDIYA  350 (424)
Q Consensus       300 iPaA~~~~I--t~~na~~i~akiIvEgAN~p~t~eA~~iL~-----~rG--I~viPD~la  350 (424)
                      |....+...  +-+-+.+.++.+|++- =| ++++-.+.|+     .+.  |++.|-+..
T Consensus        49 IDFS~p~~~~~~~~~~~~~~~~~ViGT-TG-~~~~~~~~l~~~~~~~~~ipil~apNfSl  106 (135)
T d1yl7a1          49 IDFTHPDVVMGNLEFLIDNGIHAVVGT-TG-FTAERFQQVESWLVAKPNTSVLIAPNFTS  106 (135)
T ss_dssp             EECCCTTTHHHHHHHHHHTTCEEEECC-CC-CCHHHHHHHHHHHHSCTTCEEEECSCCGG
T ss_pred             EEcccHHHHHHHHHHHHhcCCCEEEec-cc-cchhHHHHHHHHHHhcCCCCEEEcCCccH
Confidence            988765544  2223445688888843 33 4454333343     334  677777643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.18  Score=43.25  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ..++++|+|+|.|..|..+|..|.++|.+|+ |.|.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vt-l~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVT-LFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceE-EEecc
Confidence            3678999999999999999999999999998 88865

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=89.36  E-value=0.16  Score=45.02  Aligned_cols=34  Identities=15%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             CCCCeEEEEec-Ch--HHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GN--VGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-Gn--VG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+||++.|.|. |+  .|..+|+.|.++|++|+ +++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vi-l~~~   40 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLV-LTGF   40 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEE-EEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEE-EEeC
Confidence            89999999995 65  99999999999999987 6654

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.15  E-value=0.2  Score=41.27  Aligned_cols=32  Identities=34%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      .||+|+|.|+||+.+|..|..++.  .++ +.|.+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELV-LIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEE-EECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEecc
Confidence            479999999999999998887774  565 67754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.51  Score=39.21  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|.+|.|.|. |.||..+++++...|++|++++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccc
Confidence            6889999995 999999999999999999988765

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=88.93  E-value=0.38  Score=41.57  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +...+|.|+|.|.+|.++++.....|+.|. +.|.+
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~-v~D~~   61 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVM-ATDVR   61 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEE-EEecc
Confidence            455799999999999999999999999987 77864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.89  E-value=0.47  Score=39.34  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463          211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT  253 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  253 (424)
                      +++.+.. .|.+|+|+|.|.+|..++.++...|+ +|+ ++|.+
T Consensus        19 ~~~~~~~-~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi-~~d~~   60 (171)
T d1pl8a2          19 CRRGGVT-LGHKVLVCGAGPIGMVTLLVAKAMGAAQVV-VTDLS   60 (171)
T ss_dssp             HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEESC
T ss_pred             HHHhCCC-CCCEEEEECCCccHHHHHHHHHHcCCceEE-eccCC
Confidence            3444443 56799999999999999999999999 566 66763

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.88  E-value=0.4  Score=39.66  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|+|+|.|.+|..+++++...|++.|.++|++
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            467899999999999999999999998777677774

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.093  Score=46.75  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+.++|+|.|.|.+|++++..|...|.+-+.+.|.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            466899999999999999999999998777788854

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.69  E-value=0.16  Score=47.51  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCCC-CCCHH
Q 014463          198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPN-GIDVP  265 (424)
Q Consensus       198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~~-GlDi~  265 (424)
                      -||-=+..++..+++..|.+|+..||+|.|.|..|-.++++|..    .|.       +|+ +.|++|-+++.. .++. 
T Consensus         3 GTa~V~lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~-~vD~~Glv~~~r~d~~~-   80 (308)
T d1o0sa1           3 GTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNRKEMNP-   80 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTCSSCCG-
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE-EEeCCCCccCCCcccCH-
Confidence            35666667778888888999999999999999999999998864    342       455 899999998654 2332 


Q ss_pred             HHHHHHHhcCCcccCCCCeeecCCc-ccccccceeeecc-ccCcccccccccc----cceEEEecCCCC--CCHHHHHHH
Q 014463          266 ALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPCA-LGGVLNKENAADV----KAKFIIEAANHP--TDPEADEIL  337 (424)
Q Consensus       266 ~L~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA-~~~~It~~na~~i----~akiIvEgAN~p--~t~eA~~iL  337 (424)
                          ++..  -..+....  -+-.+ +-..+.++||=+. .++.+|++-++..    +=.+|---+|--  ..+.+++.+
T Consensus        81 ----~k~~--~a~~~~~~--~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~  152 (308)
T d1o0sa1          81 ----RHVQ--FAKDMPET--TSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAY  152 (308)
T ss_dssp             ----GGTT--TCBSSCCC--CCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHH
T ss_pred             ----HHHH--HHHhcccC--CcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHH
Confidence                1111  00010000  00111 2245778888776 4788998887654    446888888841  123345555


Q ss_pred             H
Q 014463          338 S  338 (424)
Q Consensus       338 ~  338 (424)
                      +
T Consensus       153 ~  153 (308)
T d1o0sa1         153 T  153 (308)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.68  E-value=0.13  Score=42.03  Aligned_cols=85  Identities=7%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             EEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeec
Q 014463          223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPC  302 (424)
Q Consensus       223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPa  302 (424)
                      +.++|.||+|+++++.|.+ +..++.|.+.          +.+++.++.++.+..       ..+..++. .++||++-|
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~R----------~~~~~~~l~~~~~~~-------~~~~~~~~-~~~DiVil~   62 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILSR----------SIDRARNLAEVYGGK-------AATLEKHP-ELNGVVFVI   62 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEECS----------SHHHHHHHHHHTCCC-------CCSSCCCC-C---CEEEC
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEeC----------Chhhhcchhhccccc-------ccchhhhh-ccCcEEEEe
Confidence            4689999999999998865 5555445544          367777776654322       22344443 468999988


Q ss_pred             cccCcccccccccc--cceEEEecCCC
Q 014463          303 ALGGVLNKENAADV--KAKFIIEAANH  327 (424)
Q Consensus       303 A~~~~It~~na~~i--~akiIvEgAN~  327 (424)
                      --.+.|. +-+..+  +-++|+.-++.
T Consensus        63 v~d~~i~-~v~~~l~~~~~ivi~~s~~   88 (153)
T d2i76a2          63 VPDRYIK-TVANHLNLGDAVLVHCSGF   88 (153)
T ss_dssp             SCTTTHH-HHHTTTCCSSCCEEECCSS
T ss_pred             ccchhhh-HHHhhhcccceeeeecccc
Confidence            6555443 233333  45778877664

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.62  E-value=1.3  Score=37.14  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      +...+|+|+|.|+||+.+|..|...|.  .++ +.|.+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~Elv-LiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELA-LVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEE-EEEec
Confidence            567899999999999999999988874  666 66653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.57  E-value=0.74  Score=40.20  Aligned_cols=136  Identities=21%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCce--------------------------eCCCCC-------CHHHHH
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI--------------------------KNPNGI-------DVPALL  268 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i--------------------------~~~~Gl-------Di~~L~  268 (424)
                      .|+|+|.|..|..+|..|.++|.+|+ |.|....+                          .+|.-+       ......
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~-vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVT-VFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEE-EECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEE-EEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            58999999999999999999999987 88864210                          011111       111122


Q ss_pred             HHHHhcCC-cccCCCCeee-cC--Cc--------ccccccceeeeccccCc-----------ccccccccccceEEEecC
Q 014463          269 KYKKSNKS-LNDFQGGNAM-DL--ND--------LLVHECDVLVPCALGGV-----------LNKENAADVKAKFIIEAA  325 (424)
Q Consensus       269 ~~~~~~g~-v~~~~~~~~i-~~--~~--------ll~~~~DIliPaA~~~~-----------It~~na~~i~akiIvEgA  325 (424)
                      +..++.+. +..-+..... +.  .+        +....++|+..+.+...           +...|-..++|+.|+=+.
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt  164 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT  164 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence            22222221 1110111111 11  11        11334566655543221           223344567887555433


Q ss_pred             CC---C---CCHHHHHHHHhCCceEeccccccccCcchh
Q 014463          326 NH---P---TDPEADEILSKKGVVILPDIYANSGGVTVS  358 (424)
Q Consensus       326 N~---p---~t~eA~~iL~~rGI~viPD~laNaGGVi~s  358 (424)
                      -+   |   .|+...++.++-|..++|-.-+..|||-.+
T Consensus       165 GG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~  203 (253)
T d2gqfa1         165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTK  203 (253)
T ss_dssp             CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGG
T ss_pred             CcccccccCCCchHHHHHHhccccccccccccCCCCccc
Confidence            22   3   377888999999999999999999998543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.54  E-value=0.27  Score=43.36  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         1 gLkgK~~lVTGas~GIG~aia~~l~~~Ga~V~-~~~r~   37 (234)
T d1o5ia_           1 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVT-ICARN   37 (234)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            379999999995 7799999999999999987 66653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.50  E-value=0.31  Score=39.36  Aligned_cols=40  Identities=20%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC--CEEEEEEcCCCceeCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDITGAIKNP  259 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~G~i~~~  259 (424)
                      .|+||+|+|.|.+|..+|..|.+.+  .+|+ +.|.+-..+.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vt-lie~~~~~~~~   42 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVT-LIEPNTDYYTC   42 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSCSCEECS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEE-EEECCCccccc
Confidence            4899999999999999999998877  4766 56766555443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.26  Score=42.49  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~-l~D~~   36 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVV-LVDQT   36 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEE-EEECC
Confidence            589999999999999999999999988 77864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.47  E-value=0.15  Score=42.58  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=25.3

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ..||+|+|.|+||+.+|.+|...+..=+.+.|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            368999999999999998887777422336665

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=88.47  E-value=0.96  Score=36.67  Aligned_cols=32  Identities=34%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~  253 (424)
                      +||+|+|.|+||+.++..|...+  -.++ ..|.+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~-L~Di~   34 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELV-LLDVV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEE-Eeccc
Confidence            58999999999999999998877  3555 66754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=88.43  E-value=0.27  Score=44.14  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~   38 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIA-LLDMN   38 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            589999999995 7799999999999999987 77763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.43  E-value=0.46  Score=40.02  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  253 (424)
                      -+|.+|+|+|.|.+|..++.++...|+ +|| ++|.+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi-~vd~~   63 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRII-GIDLN   63 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EECSC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEE-EecCc
Confidence            468899999999999999999999995 677 66764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=0.29  Score=42.28  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +..||+|+|.|--|..+|..|.++|.+|+ |-+.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~-VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVT-LLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEE-EEeCC
Confidence            45689999999999999999999999987 87754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.19  E-value=0.26  Score=44.21  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||+|.|.|. +-+|..+|+.|++.|++|+.+++..
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3689999999996 6799999999999999998776653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.11  E-value=0.61  Score=38.41  Aligned_cols=120  Identities=10%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             HHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC--cccCCCCeeec
Q 014463          211 LAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS--LNDFQGGNAMD  287 (424)
Q Consensus       211 ~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~--v~~~~~~~~i~  287 (424)
                      +++.+.. .|.+|+|.|. |.+|..++.++...|++.|-++|.+          .+++. ..++.|.  +.++...... 
T Consensus        20 l~~~~~~-~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~----------~~~~~-~~~~~Ga~~~i~~~~~~~~-   86 (170)
T d1jvba2          20 VRKASLD-PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR----------EEAVE-AAKRAGADYVINASMQDPL-   86 (170)
T ss_dssp             HHHTTCC-TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS----------HHHHH-HHHHHTCSEEEETTTSCHH-
T ss_pred             HHHhCCC-CCCEEEEEeccccceeeeeecccccccccccccccc----------hhhHH-HHHHcCCceeeccCCcCHH-
Confidence            3344443 5679999995 9999999999998896444466653          22322 2222221  1111100000 


Q ss_pred             CCccc----ccccceeeeccccCccccccccc--ccceEEEecCCC-CCCHHHHHHHHhCCceEe
Q 014463          288 LNDLL----VHECDVLVPCALGGVLNKENAAD--VKAKFIIEAANH-PTDPEADEILSKKGVVIL  345 (424)
Q Consensus       288 ~~~ll----~~~~DIliPaA~~~~It~~na~~--i~akiIvEgAN~-p~t~eA~~iL~~rGI~vi  345 (424)
                       +++.    ...+|+++.|+.....-+.....  -..++|.=|... +.+-....+ ..|++.+.
T Consensus        87 -~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~-~~k~i~i~  149 (170)
T d1jvba2          87 -AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI-TLSEIQFV  149 (170)
T ss_dssp             -HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH-HHHTCEEE
T ss_pred             -HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHH-HhCCcEEE
Confidence             1111    23589999998654333333333  255676665443 233223333 34566654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.01  E-value=0.19  Score=43.13  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|..|..+|..|.++|.+|+ |.|.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~-vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAV-LLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEE-EECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEE-EEecC
Confidence            579999999999999999999999987 88864

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=87.94  E-value=0.14  Score=47.74  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----C------C-EEEEEEcCCCceeCCCC-CCHHH
Q 014463          199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----G------G-KVVAVSDITGAIKNPNG-IDVPA  266 (424)
Q Consensus       199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----G------a-kVVaVsD~~G~i~~~~G-lDi~~  266 (424)
                      ||-=+..++-.+++..|.+|++.||+|.|.|..|-.++++|...    |      . +|+ +.|++|-|++... ++.  
T Consensus         4 TaaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~-l~D~kGlv~~~R~~l~~--   80 (298)
T d1gq2a1           4 TASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW-MVDSKGLIVKGRASLTP--   80 (298)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE-EEETTEECBTTCSSCCT--
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEE-EEeCCCcccCCCcccCH--
Confidence            55556667778888889999999999999999999999988632    3      2 455 8999999996542 221  


Q ss_pred             HHHHHHhcCCcccCCCCeeecCCccc-ccccceeeeccc-cCcccccccccc----cceEEEecCCCC--CCHHHHHHHH
Q 014463          267 LLKYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAANHP--TDPEADEILS  338 (424)
Q Consensus       267 L~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~p--~t~eA~~iL~  338 (424)
                         +++.   +... ..+.-+.+++. ..+.++||=+.. ++.+|++-++.+    +=.+|---+|--  ..+.+++.++
T Consensus        81 ---~k~~---~a~~-~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~  153 (298)
T d1gq2a1          81 ---EKEH---FAHE-HCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYK  153 (298)
T ss_dssp             ---TGGG---GCBS-CCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHH
T ss_pred             ---HHHH---HHHH-hhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhh
Confidence               1111   0000 00000111222 356788887764 899999877643    346888888842  2344455554

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=0.7  Score=36.08  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCH
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDV  264 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi  264 (424)
                      ++|+|+|.|.+|.-+|..|++.|.+|. +.+....+.  ..+|.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~~l--~~~d~   62 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTH-LFEMFDAPL--PSFDP   62 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS--TTSCH
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEE-EEeecchhh--hhcch
Confidence            689999999999999999999999986 778766554  23553

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.90  E-value=0.24  Score=44.19  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CCCCeEEEEec-C--hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-G--NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-G--nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. |  -+|..+|+.|.++|++|+ ++|.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~-i~~r~   40 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLA-FTYLN   40 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            79999999996 5  499999999999999998 77763

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.76  E-value=0.22  Score=44.59  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~   42 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIYRS   42 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEESS
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            4689999999995 6799999999999999988 66663

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.68  E-value=0.31  Score=44.80  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      .+|++|.|.|. |-+|+++++.|.++|++|++...
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            57899999995 99999999999999999997654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.45  Score=42.55  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++||++.|.|. +.+|..+|+.|.+.|++|+ ++|.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv-~~~r   42 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVV-GCAR   42 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            89999999995 8899999999999999998 5665

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=0.23  Score=43.81  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|..   ..|+.+|+.|.+.|++|+ ++|.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~-i~~~~   40 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQN   40 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEE-EEeCC
Confidence            799999999864   388999999999999988 77764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.57  E-value=0.79  Score=37.66  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=27.4

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~  252 (424)
                      -.++||+|+|.|+||+.+|..|...|.  .++ ..|.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~-L~Di   39 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIV-LIDA   39 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEE-EEee
Confidence            357899999999999999998877663  555 6665

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.24  Score=44.11  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.| .+.+|+.+|+.|+++|++|+ ++|.+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi-~~~r~   39 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVI-ATDIN   39 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            8999999988 59999999999999999998 56653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.50  E-value=0.89  Score=36.17  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      .++++|+|.|-+|.-+|..|.+.|.+|. +.+....+. | .+|.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vt-ive~~~~il-~-~~d~~   68 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLD-VVEMMDGLM-Q-GADRD   68 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEE-EEEeecccc-c-cchhh
Confidence            4799999999999999999999999987 777665554 2 35543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.49  E-value=0.49  Score=37.50  Aligned_cols=42  Identities=24%  Similarity=0.341  Sum_probs=34.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHH
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP  265 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~  265 (424)
                      ++++|+|.|.+|..+|.+|.+.|.+|. |.+....+. | .+|.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vt-ii~~~~~~l-~-~~d~e   65 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVT-VVEFQPQIG-A-SMDGE   65 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS-S-SSCHH
T ss_pred             CeEEEECCCchHHHHHHHHHhhCccee-EEEeccccc-h-hhhhh
Confidence            699999999999999999999999987 777665554 3 36643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.39  E-value=0.23  Score=44.65  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.| .+.+|..+|+.|.++|++|+ ++|.+
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vv-i~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            359999999999 58999999999999999998 66654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.32  E-value=0.67  Score=39.70  Aligned_cols=35  Identities=31%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|.+|+|+|.|.||..++.++...|+..|.++|++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            57899999999999999999988888544467763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.32  E-value=0.56  Score=38.25  Aligned_cols=31  Identities=39%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~  252 (424)
                      +||+|+|.|+||+.+|..|...+  ..++ ..|.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            58999999999999998887655  3555 5564

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.22  E-value=0.38  Score=40.93  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=29.3

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ..+||+|.| -|.+|+++++.|.++|.+|++++-
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R   35 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence            457999999 599999999999999999998763

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.12  E-value=0.25  Score=44.40  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~-~~~r~   41 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIH-TCARN   41 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            689999999995 7799999999999999988 56653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.11  E-value=0.5  Score=41.33  Aligned_cols=113  Identities=11%  Similarity=0.098  Sum_probs=63.5

Q ss_pred             CCCeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCcccc-c
Q 014463          219 SNMKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLV-H  294 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~-~  294 (424)
                      +-.||+|+|+|+.|. +.+..+.. .+.+|++|+|.+          .+.+.+..++.+ +.. +.... -+-+++++ .
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~----------~~~a~~~~~~~~-i~~-~~~~~~~d~~ell~~~   99 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN----------AEKAKIVAAEYG-VDP-RKIYDYSNFDKIAKDP   99 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC----------HHHHHHHHHHTT-CCG-GGEECSSSGGGGGGCT
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC----------HHHHHHHHHhhc-ccc-ccccccCchhhhcccc
Confidence            447999999999996 56666654 489999999974          556655555432 110 00000 12256664 4


Q ss_pred             ccceeeeccccCccccccccc---ccceEEEecCCCCCC-HHHHHH---HHhCCceEe
Q 014463          295 ECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTD-PEADEI---LSKKGVVIL  345 (424)
Q Consensus       295 ~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t-~eA~~i---L~~rGI~vi  345 (424)
                      ++|+++=|. .+..+.+-+..   -+-.+++|--= .+| .++.++   .+++|+.+.
T Consensus       100 ~iD~V~I~t-p~~~H~~~~~~al~~gk~v~~EKPl-a~~~~e~~~l~~~a~~~~~~~~  155 (221)
T d1h6da1         100 KIDAVYIIL-PNSLHAEFAIRAFKAGKHVMCEKPM-ATSVADCQRMIDAAKAANKKLM  155 (221)
T ss_dssp             TCCEEEECS-CGGGHHHHHHHHHHTTCEEEECSSC-CSSHHHHHHHHHHHHHHTCCEE
T ss_pred             cceeeeecc-chhhhhhHHHHhhhcchhhhcCCCc-cCCHHHHHHHHHHHHhcCCcEE
Confidence            688887653 33333332222   25578888621 123 345443   345566553

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.06  E-value=0.42  Score=43.14  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r   36 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVT-ITGR   36 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            378999999985 7899999999999999988 7776

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.04  E-value=0.41  Score=41.68  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHH--------------------HCCCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFH--------------------EHGGKVVAVSDITGAIKNPNGIDVPALLKY  270 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~--------------------~~GakVVaVsD~~G~i~~~~GlDi~~L~~~  270 (424)
                      .++.|++|+|+|-|||+.-+|+.|.                    +.|++=|.+...+|-.--  -+...+|.+.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~--~ft~~Elre~  107 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA--AFTTLELREL  107 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC--CCCHHHHHHG
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhC--CCChhhhhhh
Confidence            4578999999999999999999887                    578877778777664321  2344555443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.95  E-value=0.39  Score=42.98  Aligned_cols=37  Identities=32%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~r~   44 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVV-VSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEE-EEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            3589999999985 7899999999999999988 67763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.91  E-value=0.36  Score=43.29  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~-i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVV-IADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            389999999995 7799999999999999987 77763

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=0.39  Score=42.58  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~-~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLV-ACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            479999999995 7799999999999999988 66753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.80  E-value=0.38  Score=42.78  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~-~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIA-IADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            589999999996 7799999999999999988 66764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.41  Score=42.88  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      |+||++.|.|. +.+|+.+|+.|+++|++|+ +++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vi-l~~r   46 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVV-VTAR   46 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence            89999999995 6799999999999999998 5554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.74  E-value=0.13  Score=42.48  Aligned_cols=31  Identities=35%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCC-EEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~  252 (424)
                      +||+|+|.|+||+.+|..|...+. .++ ..|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~-l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIV-LLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEE-EECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEE-EEee
Confidence            589999999999999988876663 654 4564

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.62  E-value=0.36  Score=43.08  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.| .+.+|+.+|+.|++.|++|+ ++|.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~-~~~~~   38 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVA-LCDLR   38 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            7999999999 58899999999999999987 77764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.41  E-value=0.74  Score=38.16  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -+|.+|+|+|.|.+|..++..+...|+..|-++|++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            478899999999999999999999986444466664

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.25  E-value=0.37  Score=43.88  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463          218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs  250 (424)
                      .+++||.|.| -|-+|+++++.|.++|.+|+++.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~   39 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYS   39 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4789999999 59999999999999999998664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.20  E-value=0.51  Score=42.41  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~-l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVT-ITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence            489999999885 8899999999999999988 77763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.17  E-value=0.72  Score=36.98  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCcee
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIK  257 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~  257 (424)
                      .+++++|+|.|.+|..+|..|.+.|.+|. +.+..-.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vt-vie~~~~~l   71 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVT-LLDTAARVL   71 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSTT
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCccee-eeeeccccc
Confidence            46899999999999999999999999976 777654443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.01  E-value=0.9  Score=37.36  Aligned_cols=31  Identities=35%  Similarity=0.455  Sum_probs=25.1

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI  252 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~  252 (424)
                      +||+|+|.|+||+.+|-.|..+|  ..++ ..|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEE-EEec
Confidence            68999999999999999887766  3555 5565

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.94  E-value=0.38  Score=42.85  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      ++|+||++.|.|. +.+|..+|+.|++.|++|+ +++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vv-i~~   37 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVV-VNY   37 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEc
Confidence            4699999999985 7799999999999999998 543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=85.85  E-value=0.44  Score=42.65  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~   37 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLS-LVDVS   37 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            378999999995 7899999999999999987 77763

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.41  Score=43.87  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=31.4

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+ ++|.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vv-i~~r~   45 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVV-IASRK   45 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            89999999995 7799999999999999988 77763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.61  E-value=0.47  Score=41.62  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEecChHHHHHHHHHHH--------------------CCCEEEEEEcCCC
Q 014463          216 KSISNMKFAIQGFGNVGSWAAKFFHE--------------------HGGKVVAVSDITG  254 (424)
Q Consensus       216 ~~l~g~~vaIqGfGnVG~~~a~~L~~--------------------~GakVVaVsD~~G  254 (424)
                      .+++|++|+|+|-|||+.-+|+.|.+                    .|++=|.+...+|
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45889999999999999999999986                    4777777877766

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.34  Score=40.00  Aligned_cols=108  Identities=10%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             CeEEEEecChHHHH-HHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463          221 MKFAIQGFGNVGSW-AAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV  298 (424)
Q Consensus       221 ~~vaIqGfGnVG~~-~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI  298 (424)
                      .||+|+|+|++|+. .+..|.. .+.++++|+|.+.          +...+..++.+ +.      ..+..+.+..++|+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~----------~~~~~~~~~~~-~~------~~~~~~~l~~~~D~   64 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR----------AKALPICESWR-IP------YADSLSSLAASCDA   64 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC----------TTHHHHHHHHT-CC------BCSSHHHHHTTCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh----------Hhhhhhhhccc-cc------ccccchhhhhhccc
Confidence            58999999999975 4666654 4789999999753          12223333221 11      12221222347888


Q ss_pred             eeeccccCccccccccc---ccceEEEecCCCCCCHHHHHH---HHhCCceEec
Q 014463          299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEI---LSKKGVVILP  346 (424)
Q Consensus       299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~i---L~~rGI~viP  346 (424)
                      ++-|. .+..+.+-+..   -+..+++|===.....++.++   .+++|+.+..
T Consensus        65 V~I~t-p~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v  117 (164)
T d1tlta1          65 VFVHS-STASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMV  117 (164)
T ss_dssp             EEECS-CTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccc-cchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEE
Confidence            77663 23333332222   255788884111112344443   4566665443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.55  E-value=0.35  Score=42.89  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+++||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~-~~~r~   40 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVA-VTHRG   40 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            3589999999996 6799999999999999998 56653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.43  E-value=0.37  Score=39.35  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh--cCCcccCCCCeeecCCcccc----cc
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS--NKSLNDFQGGNAMDLNDLLV----HE  295 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~--~g~v~~~~~~~~i~~~~ll~----~~  295 (424)
                      +++|.|+|.+|+.+++.|.+.|..++ |.|.+          .+...+..++  ...+.-+. +. .+..++|.    .+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~-vId~d----------~~~~~~~~~~~~~~~~~vi~-Gd-~~d~~~L~~a~i~~   71 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVT-VISNL----------PEDDIKQLEQRLGDNADVIP-GD-SNDSSVLKKAGIDR   71 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEE-EEECC----------CHHHHHHHHHHHCTTCEEEE-SC-TTSHHHHHHHTTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEE-EEecc----------chhHHHHHHHhhcCCcEEEE-cc-CcchHHHHHhcccc
Confidence            69999999999999999999999988 44442          2222222111  00111000 01 11223331    36


Q ss_pred             cceeeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463          296 CDVLVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGV  342 (424)
Q Consensus       296 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI  342 (424)
                      +|.+|-+.-....|   ...++++  ..++|+...|    ++-.+.|++.|+
T Consensus        72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Ga  119 (153)
T d1id1a_          72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD----SKNLNKIKMVHP  119 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS----GGGHHHHHTTCC
T ss_pred             CCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcC----HHHHHHHHHCCC
Confidence            78888775432221   1223332  5688887643    666788999887

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.23  E-value=0.076  Score=41.49  Aligned_cols=38  Identities=8%  Similarity=-0.000  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +.+|++|+|+|.|+-|.-+|..|.+...+++-++-...
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            48999999999999999999999988888774554433

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.18  E-value=0.37  Score=43.01  Aligned_cols=35  Identities=14%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~-~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIV-LNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence            68999999885 7799999999999999988 77764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.17  E-value=0.18  Score=40.68  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~  253 (424)
                      .+|+|.|.|+.|+.+++.+. +.+.+++|+.|.+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd   37 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVD   37 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc
Confidence            48999999999999998764 5689999999975

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.91  E-value=0.39  Score=39.62  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.2

Q ss_pred             eEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~  253 (424)
                      +|+|+|.|..|..+|..|.++|. +|+ |-|.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~-vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLL-ILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEE-EECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEE-EEECC
Confidence            69999999999999999999997 465 87754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.90  E-value=0.44  Score=43.84  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +.++|+|+|.|--|..+|..|.++|.+|+ |.|.+
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~-viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVH-IIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEE-EEECC
Confidence            45899999999999999999999999987 88854

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.89  E-value=0.52  Score=41.68  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. +..|..+|+.|.++|++|+ +++.+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~-~~~r~   38 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLV-AVDRE   38 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            89999999986 6799999999999999998 66653

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.87  E-value=0.33  Score=41.87  Aligned_cols=36  Identities=33%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG  254 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G  254 (424)
                      +++++|+|+|||+=|.+=|..|.+.|.+|+ |.=..|
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~-VGLr~g   49 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGLRSG   49 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EECCTT
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEE-EEcCCC
Confidence            679999999999999999999999999887 665554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.58  E-value=0.44  Score=39.27  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -|+|+|.|--|..+|..|.++|.+|+ |.|.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~-vlE~~   37 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVL-HIDKQ   37 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEE-EEcCC
Confidence            48999999999999999999999976 88975

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.40  E-value=1.5  Score=35.75  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             CCeEEEEec----ChHHHHHHHHHHHCCCEEEEE
Q 014463          220 NMKFAIQGF----GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       220 g~~vaIqGf----GnVG~~~a~~L~~~GakVVaV  249 (424)
                      -++|||.|.    ++.|..+++.|.+.|++|+.|
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pV   52 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV   52 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEE
Confidence            468999995    789999999999999999876

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.38  E-value=0.39  Score=40.79  Aligned_cols=31  Identities=35%  Similarity=0.441  Sum_probs=26.0

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      ++|+|+|.|-||..+|..|. +|.+|+++ |.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~-Din   31 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIV-DIL   31 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEE-CSC
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEE-ECC
Confidence            58999999999999997774 69999954 754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=84.32  E-value=0.42  Score=41.78  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+|+|.|-+|..+|..|.++|.+|+ |.|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~-vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTA-LFESG   36 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEE-EEeCC
Confidence            49999999999999999999999988 88853

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.28  E-value=0.47  Score=43.64  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+||++.|.|. +.+|+.+|+.|.++|++|+ ++|.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vv-i~d~~   40 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVV-VNDLG   40 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence            589999999995 7799999999999999987 88864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=84.25  E-value=0.33  Score=43.64  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .+|+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv-~~~r   39 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVV-VNYR   39 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence            3689999999884 8899999999999999998 5554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.23  E-value=1  Score=37.65  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +|.+|.|+|. |.||+.++++....|++|++++.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~   63 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS   63 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCC
Confidence            6899999997 889999999999999999988754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.23  E-value=1.1  Score=36.89  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      -.|.+|+|.|.|.+|..++..+...|+..|.++|++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            467899999999999999999998988666577774

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.02  E-value=0.46  Score=44.29  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463          220 NMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV  249 (424)
Q Consensus       220 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV  249 (424)
                      |+||.|.|. |-+|+++++.|.++|.+|+++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            789999995 999999999999999999965

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.59  E-value=0.73  Score=41.09  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .|+||.+.|.|. +.+|+.+|+.|++.|++|+ ++|.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~-~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVT-ITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            479999999884 8999999999999999987 77763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.53  E-value=0.27  Score=41.28  Aligned_cols=32  Identities=25%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      |+++|+|+|-|+.|..+|.++.+.|.+|+ |.|
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~-iie   35 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPV-LIT   35 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCE-EEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceE-EEE
Confidence            46789999999999999999999999987 555

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.52  E-value=0.71  Score=37.23  Aligned_cols=81  Identities=25%  Similarity=0.438  Sum_probs=52.3

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL  299 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl  299 (424)
                      +||+|.|+ |.+|+.+++.+.+.+..+++..|.+.                      .      +.      + .++||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------~------~~------~-~~~DVv   45 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------V------EE------L-DSPDVV   45 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------E------EE------C-SCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------H------HH------h-ccCCEE
Confidence            57999996 99999999999999999987655321                      0      00      1 247888


Q ss_pred             eeccccCcc--cccccccccceEEEecCCCCCCHHHHHHHH
Q 014463          300 VPCALGGVL--NKENAADVKAKFIIEAANHPTDPEADEILS  338 (424)
Q Consensus       300 iPaA~~~~I--t~~na~~i~akiIvEgAN~p~t~eA~~iL~  338 (424)
                      |.-..+...  +-+.+.+-+..+|++=..  .+++-.+.|+
T Consensus        46 IDFS~p~~~~~~l~~~~~~~~p~ViGTTG--~~~~~~~~i~   84 (128)
T d1vm6a3          46 IDFSSPEALPKTVDLCKKYRAGLVLGTTA--LKEEHLQMLR   84 (128)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEECCCS--CCHHHHHHHH
T ss_pred             EEecCHHHHHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHH
Confidence            877655433  222334457788775442  4555444444

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=83.47  E-value=0.49  Score=43.31  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      +.|+|+|.|. |.+|+++++.|.++|.+|++++-
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEEC
Confidence            4589999995 99999999999999999998863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.41  E-value=0.46  Score=42.32  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      |+||++.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVM-ITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence            89999999984 7899999999999999987 77763

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=0.64  Score=41.26  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      ++||++.|.|. +-+|+.+|+.|.++|++|+ ++|.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~-i~~r   35 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVA-LVDW   35 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence            47899999995 7799999999999999988 7776

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.29  E-value=0.87  Score=38.12  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463          217 SISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT  253 (424)
Q Consensus       217 ~l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~  253 (424)
                      .++..+|+|+|.|+||+.+|..|...|.  .++ +.|.+
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elv-L~D~~   53 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELA-LVDAD   53 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEE-EECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence            3667799999999999999999987774  565 66653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.19  E-value=0.69  Score=38.27  Aligned_cols=34  Identities=15%  Similarity=-0.008  Sum_probs=29.3

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -+++|+|+|-||+|.-+|..+.+.|++.|-+.-.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEe
Confidence            4568999999999999999999999987766544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.01  E-value=0.39  Score=41.84  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          220 NMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       220 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      -+||.|.|. |.+|+++++.|.+.|.+|++++
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~   34 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLV   34 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence            378999995 9999999999999999999765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.94  E-value=1  Score=39.09  Aligned_cols=30  Identities=27%  Similarity=0.384  Sum_probs=27.1

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS  250 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs  250 (424)
                      +||.|.|. |-+|+++++.|.++|..|++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~   32 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTD   32 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEee
Confidence            57999996 9999999999999999999663

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.73  E-value=0.62  Score=41.69  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=27.6

Q ss_pred             CeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463          221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      |||.|.|. |-+|+++++.|.++|++|+++.-
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r   32 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVA   32 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999995 99999999999999999997753

>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=82.62  E-value=1.6  Score=34.75  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             CCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463          194 GREAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN  258 (424)
Q Consensus       194 gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~  258 (424)
                      |....|.+....+++.+.+. ....++...|.+-|||.==..+.+.|...|.+|+.|.|.+..-||
T Consensus        42 g~rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~G~gR~~~ik~l~~~g~kI~~I~D~T~iphn  107 (119)
T d2uubk1          42 GSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHN  107 (119)
T ss_dssp             SGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECCCTTHHHHHHHHHTSSSEEEECEECCCCCSS
T ss_pred             cccccchhHHHHHHHHHHHHHHHcCCcEEEEEEEcCCCChHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence            44467887777777766652 344567788899999985556668888999999999998765553

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.27  E-value=0.82  Score=39.59  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      -.+++|+|+|.|..|..+|..|.++|..|+ |.|.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~-l~E~   80 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVH-LTDT   80 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcccee-eEee
Confidence            467899999999999999999999999987 6664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.24  E-value=0.64  Score=42.42  Aligned_cols=32  Identities=28%  Similarity=0.265  Sum_probs=27.5

Q ss_pred             CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcCC
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT  253 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~  253 (424)
                      +||+|+|.|..|..+|..|++.|  .+|+ |.+.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~-vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVT-LFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEE-EECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEE-EEECC
Confidence            58999999999999999998776  4887 77865

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=82.09  E-value=0.69  Score=38.36  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=27.4

Q ss_pred             CCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCC
Q 014463          219 SNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT  253 (424)
Q Consensus       219 ~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~  253 (424)
                      +.+||+|+|.|+||+.+|..|...+ +.++ +.|.+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D~~   40 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVV-LYDVV   40 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEE-EEEec
Confidence            4579999999999999998887777 4665 66753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.88  E-value=0.65  Score=41.26  Aligned_cols=37  Identities=19%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      .+|++|.+.|.|. +.+|+.+|+.|.+.|++|+ ++|.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~-~~~r~   43 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVI-CISRT   43 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEE-EEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEECC
Confidence            3588999999995 7899999999999999987 66653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.75  E-value=0.49  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             CCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463          220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD  251 (424)
Q Consensus       220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD  251 (424)
                      .++|+|+|-|+.|..+|.+|.+.|.+++ |.|
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~-vie   35 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPL-LFE   35 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCE-EEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEE-EEE
Confidence            4689999999999999999999999988 666

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.44  E-value=1.2  Score=36.62  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=28.6

Q ss_pred             CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      .|.+|.|+| .|.||..++++....|++|+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s   62 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT   62 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccc
Confidence            578999985 5779999999999999999966544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.43  E-value=0.55  Score=41.43  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463          222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT  253 (424)
Q Consensus       222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~  253 (424)
                      +|+|+|.|.+|..+|..|.++|.+|+ |.|.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~-vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQ   34 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEE-EECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence            69999999999999999999999987 78865

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.42  E-value=0.81  Score=39.98  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI  252 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~  252 (424)
                      +||+|.|.|. +.+|+.+|+.|.++|++|+. .|.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~-~~~   34 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVAS-IDV   34 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEE-EES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-EeC
Confidence            5899999996 88999999999999999984 453

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.40  E-value=0.6  Score=39.37  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=25.4

Q ss_pred             CeEEEEecChHHHHHHHHHHHCCCEEE
Q 014463          221 MKFAIQGFGNVGSWAAKFFHEHGGKVV  247 (424)
Q Consensus       221 ~~vaIqGfGnVG~~~a~~L~~~GakVV  247 (424)
                      ++|+|.|.|+.|..+|..|.+.|.+|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~   27 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVR   27 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence            589999999999999999999999887

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.25  E-value=0.77  Score=37.39  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc-CCC
Q 014463          219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD-ITG  254 (424)
Q Consensus       219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD-~~G  254 (424)
                      +..||.|||+ |+-|+.-++.+.+.|-+|||=.. .+|
T Consensus        14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKg   51 (130)
T d1euca1          14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKG   51 (130)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCC
Confidence            5679999999 99999999999999999995433 344